Query 013470
Match_columns 442
No_of_seqs 209 out of 2144
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 5.6E-50 1.2E-54 381.4 30.8 366 27-436 61-465 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.1E-42 6.8E-47 328.5 25.8 324 68-437 52-411 (476)
3 KOG1427 Uncharacterized conser 100.0 1.9E-42 4.2E-47 309.7 22.2 360 25-436 11-399 (443)
4 KOG1427 Uncharacterized conser 100.0 4.6E-38 1E-42 281.6 16.2 304 31-352 74-397 (443)
5 KOG0783 Uncharacterized conser 100.0 1E-27 2.2E-32 239.4 14.5 293 31-352 139-447 (1267)
6 KOG0783 Uncharacterized conser 99.9 9.3E-24 2E-28 211.2 14.0 262 90-390 141-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 2.1E-21 4.6E-26 201.2 23.3 339 30-433 494-892 (3738)
8 KOG1428 Inhibitor of type V ad 99.8 1.1E-17 2.4E-22 174.2 19.7 304 68-437 480-838 (3738)
9 PF00415 RCC1: Regulator of ch 99.2 6.4E-12 1.4E-16 86.9 4.1 50 380-433 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.2E-11 2.6E-16 85.5 4.1 50 33-82 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.0 4E-10 8.6E-15 68.0 3.9 30 128-157 1-30 (30)
12 KOG0941 E3 ubiquitin protein l 99.0 3.1E-12 6.7E-17 130.6 -9.0 191 175-441 11-201 (850)
13 PF13540 RCC1_2: Regulator of 98.9 1.9E-09 4.1E-14 65.0 4.7 30 69-103 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 98.9 1.7E-11 3.8E-16 125.2 -8.3 146 57-211 4-156 (850)
15 KOG0315 G-protein beta subunit 94.5 3.8 8.3E-05 37.5 20.3 68 236-306 126-197 (311)
16 KOG0646 WD40 repeat protein [G 93.6 5.6 0.00012 39.5 16.5 215 127-390 83-308 (476)
17 KOG3669 Uncharacterized conser 93.2 6 0.00013 40.5 16.3 107 133-259 190-299 (705)
18 PF11725 AvrE: Pathogenicity f 91.1 5.8 0.00013 45.7 14.8 293 67-437 489-815 (1774)
19 KOG3669 Uncharacterized conser 90.0 4.7 0.0001 41.2 11.8 99 242-352 190-291 (705)
20 KOG0291 WD40-repeat-containing 87.7 42 0.00092 35.8 21.6 224 32-314 317-558 (893)
21 KOG0646 WD40 repeat protein [G 86.3 38 0.00083 33.9 16.8 80 90-188 102-185 (476)
22 KOG0943 Predicted ubiquitin-pr 86.0 0.067 1.5E-06 58.1 -3.9 127 178-307 374-506 (3015)
23 KOG0315 G-protein beta subunit 85.1 31 0.00068 31.8 15.3 119 115-262 73-197 (311)
24 PF11725 AvrE: Pathogenicity f 83.8 7.7 0.00017 44.8 10.3 102 232-352 700-812 (1774)
25 PF07569 Hira: TUP1-like enhan 81.0 8.9 0.00019 34.9 8.2 68 235-304 13-93 (219)
26 KOG0943 Predicted ubiquitin-pr 80.4 0.22 4.7E-06 54.4 -2.8 130 124-261 372-504 (3015)
27 PHA02713 hypothetical protein; 80.1 62 0.0014 34.0 15.3 12 379-390 511-522 (557)
28 KOG0274 Cdc4 and related F-box 76.5 1E+02 0.0022 32.2 17.6 164 114-311 320-486 (537)
29 PHA03098 kelch-like protein; P 71.3 1.3E+02 0.0029 31.2 16.7 13 140-152 385-397 (534)
30 PF07569 Hira: TUP1-like enhan 70.1 24 0.00051 32.2 7.9 28 127-154 14-41 (219)
31 TIGR03300 assembly_YfgL outer 67.3 63 0.0014 31.8 11.1 57 244-303 320-376 (377)
32 PHA02713 hypothetical protein; 66.5 1.2E+02 0.0027 31.9 13.5 20 134-153 341-360 (557)
33 KOG4441 Proteins containing BT 66.1 1.2E+02 0.0026 32.1 13.2 56 252-307 426-485 (571)
34 KOG4441 Proteins containing BT 64.4 1.3E+02 0.0029 31.7 13.2 55 250-305 472-530 (571)
35 smart00706 TECPR Beta propelle 63.7 17 0.00037 22.1 4.0 24 236-259 9-33 (35)
36 PLN02153 epithiospecifier prot 63.6 1.5E+02 0.0032 28.8 20.5 18 76-99 129-146 (341)
37 PF04841 Vps16_N: Vps16, N-ter 63.3 1.7E+02 0.0037 29.4 20.2 153 127-304 82-244 (410)
38 KOG1240 Protein kinase contain 62.4 1.4E+02 0.0031 34.0 12.9 131 118-262 1041-1181(1431)
39 KOG1274 WD40 repeat protein [G 59.3 2.8E+02 0.0061 30.6 20.2 54 35-95 27-80 (933)
40 PHA03098 kelch-like protein; P 57.3 2.4E+02 0.0053 29.2 16.4 16 245-261 382-397 (534)
41 COG4257 Vgb Streptogramin lyas 56.2 1.4E+02 0.0031 28.2 10.0 135 134-303 62-205 (353)
42 KOG0291 WD40-repeat-containing 52.6 3.3E+02 0.0073 29.4 24.6 155 61-261 292-454 (893)
43 PHA02790 Kelch-like protein; P 52.0 2.2E+02 0.0047 29.3 12.2 15 139-153 357-371 (480)
44 TIGR01063 gyrA DNA gyrase, A s 51.5 3.8E+02 0.0082 29.7 16.1 120 185-311 544-673 (800)
45 PF04762 IKI3: IKI3 family; I 51.2 4.1E+02 0.0089 30.0 18.5 47 246-306 593-639 (928)
46 PF06739 SBBP: Beta-propeller 49.9 19 0.00042 22.6 2.6 18 245-262 15-32 (38)
47 KOG0293 WD40 repeat-containing 47.2 95 0.002 30.9 7.8 72 67-152 396-469 (519)
48 PF12341 DUF3639: Protein of u 43.7 57 0.0012 18.9 3.6 24 126-149 2-25 (27)
49 PHA02790 Kelch-like protein; P 39.9 1.4E+02 0.003 30.7 8.5 13 140-152 403-415 (480)
50 PRK05560 DNA gyrase subunit A; 39.9 5.7E+02 0.012 28.4 15.7 117 185-307 546-671 (805)
51 PRK11138 outer membrane biogen 39.6 3.3E+02 0.0071 26.9 11.0 18 287-304 375-392 (394)
52 KOG1900 Nuclear pore complex, 39.1 4.3E+02 0.0093 30.6 12.2 66 190-262 92-157 (1311)
53 PF04762 IKI3: IKI3 family; I 38.4 6.3E+02 0.014 28.6 19.7 26 126-151 427-454 (928)
54 PLN02153 epithiospecifier prot 37.7 3.8E+02 0.0083 25.8 17.9 17 136-153 130-146 (341)
55 COG4257 Vgb Streptogramin lyas 36.9 3.8E+02 0.0082 25.5 10.3 140 74-259 61-205 (353)
56 KOG1034 Transcriptional repres 36.3 3.5E+02 0.0077 26.2 9.6 58 248-305 323-382 (385)
57 PF02239 Cytochrom_D1: Cytochr 34.4 4.7E+02 0.01 25.8 11.2 118 127-260 28-156 (369)
58 KOG1587 Cytoplasmic dynein int 34.0 5.9E+02 0.013 26.9 17.0 28 236-263 443-473 (555)
59 PF01436 NHL: NHL repeat; Int 33.4 67 0.0015 18.4 2.9 18 245-262 4-21 (28)
60 KOG1034 Transcriptional repres 33.0 1.1E+02 0.0023 29.6 5.6 59 139-206 323-381 (385)
61 PRK14131 N-acetylneuraminic ac 30.6 5.3E+02 0.012 25.3 15.6 17 137-153 132-148 (376)
62 PLN02193 nitrile-specifier pro 30.1 6.1E+02 0.013 25.9 19.4 17 245-262 271-287 (470)
63 PF04841 Vps16_N: Vps16, N-ter 30.0 5.8E+02 0.013 25.6 17.7 66 236-305 218-286 (410)
64 KOG1240 Protein kinase contain 28.8 7.7E+02 0.017 28.6 11.9 78 68-155 1050-1130(1431)
65 KOG0282 mRNA splicing factor [ 28.5 6.5E+02 0.014 25.7 15.3 39 338-400 435-473 (503)
66 PF03785 Peptidase_C25_C: Pept 28.4 86 0.0019 23.5 3.4 42 271-312 8-50 (81)
67 KOG1900 Nuclear pore complex, 27.6 1E+03 0.022 27.7 21.3 205 79-305 92-339 (1311)
68 KOG0649 WD40 repeat protein [G 27.2 5.2E+02 0.011 24.1 10.6 164 130-303 17-183 (325)
69 KOG2444 WD40 repeat protein [G 27.1 3.3E+02 0.0071 25.0 7.5 76 282-396 64-139 (238)
70 PF13418 Kelch_4: Galactose ox 25.8 66 0.0014 20.9 2.3 17 136-152 4-20 (49)
71 PRK13979 DNA topoisomerase IV 25.4 1E+03 0.022 27.0 19.6 167 134-313 515-696 (957)
72 PRK05560 DNA gyrase subunit A; 25.2 9.7E+02 0.021 26.6 22.1 221 65-308 535-774 (805)
73 PLN03215 ascorbic acid mannose 24.6 2.9E+02 0.0063 27.4 7.3 62 179-260 161-225 (373)
74 PLN02193 nitrile-specifier pro 24.3 7.7E+02 0.017 25.1 19.9 17 188-208 271-287 (470)
75 TIGR03300 assembly_YfgL outer 24.3 6.7E+02 0.014 24.4 12.5 59 244-305 279-337 (377)
76 TIGR03548 mutarot_permut cycli 23.3 6.5E+02 0.014 23.9 14.6 151 76-260 63-230 (323)
77 cd00200 WD40 WD40 domain, foun 23.1 5.1E+02 0.011 22.7 29.7 251 31-386 28-288 (289)
78 KOG1408 WD40 repeat protein [F 23.0 1E+03 0.022 26.0 15.0 70 126-206 166-247 (1080)
79 KOG0316 Conserved WD40 repeat- 22.6 6.2E+02 0.014 23.5 15.6 57 244-303 239-296 (307)
80 PF00167 FGF: Fibroblast growt 22.1 3.8E+02 0.0081 21.5 6.6 65 236-302 1-65 (122)
81 KOG0293 WD40 repeat-containing 22.0 8.2E+02 0.018 24.6 16.7 72 177-262 395-470 (519)
82 TIGR01063 gyrA DNA gyrase, A s 21.2 1.1E+03 0.025 26.0 21.0 220 64-307 532-770 (800)
83 TIGR03547 muta_rot_YjhT mutatr 21.1 7.4E+02 0.016 23.8 16.1 14 292-305 316-329 (346)
84 PRK02529 petN cytochrome b6-f 20.2 1E+02 0.0022 18.6 2.0 16 33-48 17-32 (33)
85 PLN03215 ascorbic acid mannose 20.1 3.6E+02 0.0078 26.8 7.0 60 237-304 162-225 (373)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.6e-50 Score=381.40 Aligned_cols=366 Identities=27% Similarity=0.467 Sum_probs=287.0
Q ss_pred hhhcccccEEEEecCCCCCCCCCCCCCCc-cCCeEEecC--CCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCC
Q 013470 27 EEEEQQVVKVWSWGAGTDGQLGTGRLHDE-LSPQLLNLS--SLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQ 103 (442)
Q Consensus 27 ~~~~~~~~~v~~~G~n~~gqLG~~~~~~~-~~p~~v~~~--~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gq 103 (442)
.........||+||+|..+|||++...+. ..|+...+. +...|++++||..|+++|++ ||+||+||.|..|+
T Consensus 61 ~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~-----Dg~lyswG~N~~G~ 135 (476)
T COG5184 61 THLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDH-----DGNLYSWGDNDDGA 135 (476)
T ss_pred hhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecC-----CCCEEEeccCcccc
Confidence 34556678999999999999999877766 678888776 55799999999999999999 99999999999999
Q ss_pred CCCCCC-------------c---CeecceEeeecCC--CcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCC
Q 013470 104 LGHGEM-------------V---DALYPKPVTFFDG--HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRS 165 (442)
Q Consensus 104 lG~~~~-------------~---~~~~p~~i~~~~~--~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~ 165 (442)
||+... . ...+|..+..... ...++++++||+.++++|+++|+||.||....+.++.+.+.+
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 998762 1 2567777776111 114699999999999999999999999999999998885543
Q ss_pred ccc----ceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeecc-CCCcEEEE
Q 013470 166 HSS----PVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL-HDIEIVGI 240 (442)
Q Consensus 166 ~~~----p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~i~~i 240 (442)
... ++++..+ ...|+++++|.+|.++|++ +|++|+||++..||||+.. ......+..+..+ .-..|..|
T Consensus 216 s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~---~G~vy~~Gs~qkgqlG~~~--~e~~~~~~lv~~~f~i~~i~~v 289 (476)
T COG5184 216 SQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTN---EGKVYGWGSNQKGQLGRPT--SERLKLVVLVGDPFAIRNIKYV 289 (476)
T ss_pred cccceeeeeeeecC-chheeeeccCCceEEEEec---CCcEEEecCCcccccCCch--hhhcccccccCChhhhhhhhhc
Confidence 322 3333332 3679999999999999999 9999999999999999874 2222333333332 22237889
Q ss_pred EecCCeEEEEcCCCcEEEeeCCCCCCCCCC----------Ccc--ccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCC
Q 013470 241 SANGDRSAALSAEGHLYTWGRGFNSTSDVN----------CPQ--SLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHH 308 (442)
Q Consensus 241 ~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~----------~p~--~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~ 308 (442)
+||.+|++||+++|++|+||.|.++|++.. .|. .++....|..+++|..|+++|..+|.||+||.+..
T Consensus 290 acG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~ 369 (476)
T COG5184 290 ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDR 369 (476)
T ss_pred ccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcc
Confidence 999999999999999999999999998765 121 12345569999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEEC
Q 013470 309 GMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGW 388 (442)
Q Consensus 309 gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~ 388 (442)
+|||.++.... ....+.++... .++..++||..|.++.+ .++.||.||+
T Consensus 370 ~qlg~~~~~~~---~~~~~~~ls~~--~~~~~v~~gt~~~~~~t--------------------------~~gsvy~wG~ 418 (476)
T COG5184 370 GQLGIQEEITI---DVSTPTKLSVA--IKLEQVACGTHHNIART--------------------------DDGSVYSWGW 418 (476)
T ss_pred ccccCccccee---ecCCccccccc--cceEEEEecCccceeec--------------------------cCCceEEecC
Confidence 99999875422 23334444433 27999999999999999 9999999999
Q ss_pred CCCCcccCCCCC-CccCcEEEecCccccCCCceEEEecCCCeEEEecCC
Q 013470 389 GEHGQLGLGNTC-DQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRH 436 (442)
Q Consensus 389 n~~gqLG~g~~~-~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~ 436 (442)
+++|+||.|+.. +...|+.+.-+. .....++..-||..+.++....
T Consensus 419 ge~gnlG~g~~~~~~~~pt~i~~~~--~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 419 GEHGNLGNGPKEADVLVPTLIRQPL--LSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred chhhhccCCchhhhccccccccccc--cCCCceEEeccCcceEEEecch
Confidence 999999998765 566677777311 0112567777777777666544
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.1e-42 Score=328.46 Aligned_cols=324 Identities=27% Similarity=0.406 Sum_probs=258.4
Q ss_pred cEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCe-ecceEeeecCCCcceEEEEeecCceEEEEEeCCC
Q 013470 68 SVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA-LYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGC 146 (442)
Q Consensus 68 ~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~-~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~ 146 (442)
++.|+. ..|...++. -..||+||+|...|||.+..+.. ..|++..+.......|++++||..|+++|++||.
T Consensus 52 ~~~q~~--~~~~~~~~~-----~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~ 124 (476)
T COG5184 52 KVAQII--NKHTHLLVK-----MASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGN 124 (476)
T ss_pred chhhhc--ccchhhhhh-----eeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCC
Confidence 444444 445557777 78999999999999999987754 8899888875444789999999999999999999
Q ss_pred EEEeCCCCCcccCCCCC----------------CCcccceEEeec----CCCceEEEEeCCCceEEEEeecCCCeeeeeC
Q 013470 147 LFTCGDGTFGQLGHGDY----------------RSHSSPVKVSSF----VNKNVHQIACGMRHSLVLLKDCLGNQVYGFG 206 (442)
Q Consensus 147 vy~~G~n~~gqlG~~~~----------------~~~~~p~~v~~~----~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG 206 (442)
||+||.|..|+||.... ....+|..++.. ...++++++||+++++++++ +|+||+||
T Consensus 125 lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~---~G~V~~~g 201 (476)
T COG5184 125 LYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTA---DGRVYSWG 201 (476)
T ss_pred EEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEcc---CCcEEEec
Confidence 99999999999998761 234578888762 23479999999999999999 99999999
Q ss_pred CCCCCCCCCCC--CCCc--eeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCcccc------C
Q 013470 207 SGKRGQLGVSK--DRIR--SVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSL------P 276 (442)
Q Consensus 207 ~n~~gqlg~~~--~~~~--~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i------~ 276 (442)
....+.++.+. ...+ ...+|..+. ...|+++++|..|.++|+++|++|.||.+..+|++......+ +
T Consensus 202 t~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~ 278 (476)
T COG5184 202 TFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVG 278 (476)
T ss_pred CccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccC
Confidence 99888887773 2233 234555544 357999999999999999999999999999999886443322 1
Q ss_pred ---CCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeC
Q 013470 277 ---SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTG 353 (442)
Q Consensus 277 ---~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~ 353 (442)
....|+.|+||.+|++||+++|+||+||.|.+||||.++. .........+.....+++..|..|++|..|+++|.
T Consensus 279 ~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~-~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~- 356 (476)
T COG5184 279 DPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSD-GEIGALTTKPNYKQLLSGVTICSISAGESHSLILR- 356 (476)
T ss_pred ChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcc-cccceeeccccccccCCCceEEEEecCcceEEEEe-
Confidence 2334788999999999999999999999999999999832 22222333444444556667999999999999999
Q ss_pred cccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCC--CccCcEEEecCccccCCCceEEEecCCCeEE
Q 013470 354 KFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTC--DQIHPKVVNLGDEFQNRDTQLEVFCGSGFTY 431 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~--~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~ 431 (442)
.+|.+|+||++..+|||..+.. ....|+++.... .+..++||..|++
T Consensus 357 -------------------------~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~------~~~~v~~gt~~~~ 405 (476)
T COG5184 357 -------------------------KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI------KLEQVACGTHHNI 405 (476)
T ss_pred -------------------------cCceEEEecCCccccccCcccceeecCCcccccccc------ceEEEEecCccce
Confidence 9999999999999999998844 444454444332 6899999999999
Q ss_pred EecCCc
Q 013470 432 AISRHC 437 (442)
Q Consensus 432 ~l~~~~ 437 (442)
+.+.+.
T Consensus 406 ~~t~~g 411 (476)
T COG5184 406 ARTDDG 411 (476)
T ss_pred eeccCC
Confidence 998874
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=309.66 Aligned_cols=360 Identities=23% Similarity=0.385 Sum_probs=294.6
Q ss_pred hhhhhcccccEEEEecCCCCCCCCCCCCC---CccCCeEEecCCCCcEEEEEeC--CceeEEEeCCCcccCCeEEEEeCC
Q 013470 25 EEEEEEQQVVKVWSWGAGTDGQLGTGRLH---DELSPQLLNLSSLSSVSMLACG--GAHVLALTSPSSVIGGKVFSWGRG 99 (442)
Q Consensus 25 ~~~~~~~~~~~v~~~G~n~~gqLG~~~~~---~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~~~~~dg~v~~wG~n 99 (442)
+++..+...|+++.+|.-.+-+.|--+.. ....|.++......+|+.|+.| ..|+++|+- ++++|.||.|
T Consensus 11 ~~~s~e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~m-----egk~~~wGRN 85 (443)
T KOG1427|consen 11 KDESSEEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDM-----EGKCYTWGRN 85 (443)
T ss_pred hhhhhhcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEec-----ccceeecccC
Confidence 34556677899999999888887764433 3556777776666789999866 679999999 9999999999
Q ss_pred CCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCc
Q 013470 100 SSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKN 179 (442)
Q Consensus 100 ~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 179 (442)
..||||+++......|+.|..+.. .+|++-+||++|+++||++|.||.||.|.+||||.++.......+.+......+
T Consensus 86 ekGQLGhgD~k~~e~Ptvi~gL~~--~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~ 163 (443)
T KOG1427|consen 86 EKGQLGHGDMKQRERPTVISGLSK--HKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDE 163 (443)
T ss_pred ccCccCccchhhccCCchhhhhhh--hhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCcc
Confidence 999999999999999999999988 899999999999999999999999999999999999875432222233334468
Q ss_pred eEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCc------------eeecCeEeeccCCCcEEEEEecCCeE
Q 013470 180 VHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIR------------SVSLPQVTIGLHDIEIVGISANGDRS 247 (442)
Q Consensus 180 I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~------------~~~~p~~v~~~~~~~i~~i~~g~~~s 247 (442)
|+.|+||.++++.|+. .+.|..+|...+||||.+.++.. ..+.|..+..+....|++++||.+|+
T Consensus 164 v~~v~cga~ftv~l~~---~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nht 240 (443)
T KOG1427|consen 164 VTNVACGADFTVWLSS---TESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHT 240 (443)
T ss_pred ceeeccccceEEEeec---ccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcce
Confidence 9999999999999999 89999999999999999864421 22345556667788999999999999
Q ss_pred EEEcCCCcEEEeeCCCCCCCCCCCcc------cc--C--CCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCC
Q 013470 248 AALSAEGHLYTWGRGFNSTSDVNCPQ------SL--P--SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERV 317 (442)
Q Consensus 248 ~~lt~~G~vy~wG~~~~~~~~~~~p~------~i--~--~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~ 317 (442)
++++++++||.||.+-++.++-..++ .+ + ...--.++.+|+..++.+.+-|+||.||.+... ++
T Consensus 241 vavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~----ge-- 314 (443)
T KOG1427|consen 241 VAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN----GE-- 314 (443)
T ss_pred eeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC----cc--
Confidence 99999999999999999988764432 22 1 233456789999999999999999999987531 11
Q ss_pred CCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCC
Q 013470 318 SSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLG 397 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g 397 (442)
.-.-|.++.++++.++..+.++..|.++-. |....+||...+|.++-+
T Consensus 315 -----~~mypkP~~dlsgwnl~~~~~~~~h~~v~a---------------------------d~s~i~wg~~~~g~~lgg 362 (443)
T KOG1427|consen 315 -----DWMYPKPMMDLSGWNLRWMDSGSMHHFVGA---------------------------DSSCISWGHAQYGELLGG 362 (443)
T ss_pred -----cccCCCchhhcCCccCCCcCccceeeeecc---------------------------cccccccccccccccccC
Confidence 122356677888899999999999988754 888999999988776654
Q ss_pred CC--CCccCcEEEecCccccCCCceEEEecCCCeEEEecCC
Q 013470 398 NT--CDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRH 436 (442)
Q Consensus 398 ~~--~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~ 436 (442)
.. .+..+|..++....+ .+..|++|+.|+++|++.
T Consensus 363 p~~Qkss~~Pk~v~~l~~i----~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 363 PNGQKSSAAPKKVDMLEGI----HVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccccccCccccchhcce----eccceeeccceEEEEEcc
Confidence 43 467889999999988 899999999999999875
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=4.6e-38 Score=281.59 Aligned_cols=304 Identities=26% Similarity=0.452 Sum_probs=252.6
Q ss_pred ccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCc
Q 013470 31 QQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMV 110 (442)
Q Consensus 31 ~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~ 110 (442)
..+++.|.||.|..||||.++...+..|+.|.-....+|++-+||++|+++||. +|++|.||.|.+||||.++..
T Consensus 74 ~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltd-----tG~v~afGeNK~GQlGlgn~~ 148 (443)
T KOG1427|consen 74 DMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTD-----TGQVLAFGENKYGQLGLGNAK 148 (443)
T ss_pred ecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEec-----CCcEEEecccccccccccccc
Confidence 467899999999999999998888888998887777899999999999999999 999999999999999999865
Q ss_pred C-eecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCC--------------CcccceEEeec
Q 013470 111 D-ALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYR--------------SHSSPVKVSSF 175 (442)
Q Consensus 111 ~-~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~--------------~~~~p~~v~~~ 175 (442)
. ...|.++.... ..|+.|+||..|++.|+..+.+..+|.-.|||||++... .++.|..+..+
T Consensus 149 ~~v~s~~~~~~~~---~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~ 225 (443)
T KOG1427|consen 149 NEVESTPLPCVVS---DEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL 225 (443)
T ss_pred cccccCCCccccC---ccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccc
Confidence 3 44444444433 369999999999999999999999999999999987532 23566777778
Q ss_pred CCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeecc--CCCcEEEEEecCCeEEEEcCC
Q 013470 176 VNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL--HDIEIVGISANGDRSAALSAE 253 (442)
Q Consensus 176 ~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~--~~~~i~~i~~g~~~s~~lt~~ 253 (442)
....|++++||.+|++++.+ +++||+||..-+|+||.. ..+....|+++..+ +..--.++.||+.+++.+.+-
T Consensus 226 dgvqiv~~acg~nhtvavd~---nkrVysWGFGGyGRLGHa--EqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~ 300 (443)
T KOG1427|consen 226 DGVQIVKVACGTNHTVAVDK---NKRVYSWGFGGYGRLGHA--EQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEG 300 (443)
T ss_pred cceeeEEEeccCcceeeecC---CccEEEeccccccccccc--cchhhHHHHHHHHhcCCCCCCcceeeecccceeeccc
Confidence 88899999999999999999 999999999999999987 55666677776654 334467899999999999999
Q ss_pred CcEEEeeCCCCCCCCCCCcccc--CCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccC-CCCCCCCCCccccceeee
Q 013470 254 GHLYTWGRGFNSTSDVNCPQSL--PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLS-DPERVSSTRPLSVALEKV 330 (442)
Q Consensus 254 G~vy~wG~~~~~~~~~~~p~~i--~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG-~~~~~~~~~~~~~~~~~~ 330 (442)
|.||.||.+.........|.++ ...-++..+.++..|.++ ..|..+..||...+|.+. .++...+ ...|+.+
T Consensus 301 G~Lf~~g~~k~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qks----s~~Pk~v 375 (443)
T KOG1427|consen 301 GQLFMWGKIKNNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKS----SAAPKKV 375 (443)
T ss_pred ceeEEeeccccCcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCcccccc----ccCcccc
Confidence 9999999987776665555554 567788999999988654 557789999988766554 4443332 3346788
Q ss_pred ccCCCccEEEEeecCCeeEEEe
Q 013470 331 SNLDGVKVIQIAAGAEHSAVVT 352 (442)
Q Consensus 331 ~~~~~~~I~~I~~G~~~s~~l~ 352 (442)
+.+.+.+|-+|++|..|+++|.
T Consensus 376 ~~l~~i~v~~VamGysHs~viv 397 (443)
T KOG1427|consen 376 DMLEGIHVMGVAMGYSHSMVIV 397 (443)
T ss_pred chhcceeccceeeccceEEEEE
Confidence 8888889999999999999999
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=1e-27 Score=239.39 Aligned_cols=293 Identities=23% Similarity=0.341 Sum_probs=228.9
Q ss_pred ccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCC--cEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCC
Q 013470 31 QQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLS--SVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGE 108 (442)
Q Consensus 31 ~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~--~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~ 108 (442)
+..++||.||.|.+..||.|...+...|++++++... =+++|+.+..|++|+++ .|+||+||.+..|.||.++
T Consensus 139 d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~-----kgqvY~cGhG~GGRlG~gd 213 (1267)
T KOG0783|consen 139 DLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTE-----KGQVYVCGHGAGGRLGFGD 213 (1267)
T ss_pred CCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecC-----CCcEEEeccCCCCccCcCc
Confidence 3447899999999999999999999999999987654 45789999999999999 9999999999999999998
Q ss_pred CcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCC-CCcccceEEeec--CC-CceEEEE
Q 013470 109 MVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDY-RSHSSPVKVSSF--VN-KNVHQIA 184 (442)
Q Consensus 109 ~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~-~~~~~p~~v~~~--~~-~~I~~I~ 184 (442)
......|++|+.+.+ .++.+|++...|+++||++|.||+||.|.++|||..+. .....|..+... .+ ..|+-|+
T Consensus 214 eq~~~iPkrV~gL~g--h~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgva 291 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIG--HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVA 291 (1267)
T ss_pred ccccccccccccccc--cceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhh
Confidence 888999999999888 79999999999999999999999999999999998755 334556555432 12 3699999
Q ss_pred eCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCC
Q 013470 185 CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264 (442)
Q Consensus 185 ~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~ 264 (442)
+|..|+++.++ -.||+||.| .||||..+ +...+..|+.+.. ....|..+.|....+++++.++.+|++-.-..
T Consensus 292 Ag~~hsVawt~----~~VY~wGlN-~GQlGi~~-n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~ 364 (1267)
T KOG0783|consen 292 AGKSHSVAWTD----TDVYSWGLN-NGQLGISD-NISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQ 364 (1267)
T ss_pred cccceeeeeec----ceEEEeccc-CceecCCC-CCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccc
Confidence 99999999999 789999997 59999874 4777788876633 34689999999999999999999999864222
Q ss_pred CCCCCC----Ccccc------CCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCC
Q 013470 265 STSDVN----CPQSL------PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLD 334 (442)
Q Consensus 265 ~~~~~~----~p~~i------~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
..+... ....+ .....+++..+...-.+++++-|+||.|-.++.- .....+.|..+.
T Consensus 365 ~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~----------~~~c~ftp~r~~--- 431 (1267)
T KOG0783|consen 365 VKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST----------RTSCKFTPLRIF--- 431 (1267)
T ss_pred eecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc----------eeeeecccceee---
Confidence 111100 00000 0113455666667778899999999999754321 111222232222
Q ss_pred CccEEEEeecCCeeEEEe
Q 013470 335 GVKVIQIAAGAEHSAVVT 352 (442)
Q Consensus 335 ~~~I~~I~~G~~~s~~l~ 352 (442)
.|.+|+--.+..++++
T Consensus 432 --~isdIa~~~N~~~~~t 447 (1267)
T KOG0783|consen 432 --EISDIAWTANSLILCT 447 (1267)
T ss_pred --ehhhhhhccceEEEEe
Confidence 5778888888888888
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.90 E-value=9.3e-24 Score=211.25 Aligned_cols=262 Identities=24% Similarity=0.407 Sum_probs=206.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccc
Q 013470 90 GGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSP 169 (442)
Q Consensus 90 dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p 169 (442)
-+.||.||.|....||.++......|.++.++.....-+.+|+.+.+|+++|++.|.||+||.+.-|.||+++......|
T Consensus 141 pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iP 220 (1267)
T KOG0783|consen 141 PNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIP 220 (1267)
T ss_pred ccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccc
Confidence 58999999999999999999999999999988776667789999999999999999999999999999999999899999
Q ss_pred eEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeecc--CC-CcEEEEEecCCe
Q 013470 170 VKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL--HD-IEIVGISANGDR 246 (442)
Q Consensus 170 ~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~--~~-~~i~~i~~g~~~ 246 (442)
.+++.+.+.+|.+|+...+|+++||. +|.||+||.|..+|||..+... ....|..+... ++ ..|+.+++|..|
T Consensus 221 krV~gL~gh~~~qisvs~~HslvLT~---~g~Vys~GlN~~hqLG~~~~~~-~~~~p~qI~a~r~kg~~~iIgvaAg~~h 296 (1267)
T KOG0783|consen 221 KRVPGLIGHKVIQISVSHTHSLVLTK---FGSVYSWGLNGSHQLGLSNDEL-KKDDPIQITARRIKGFKQIIGVAAGKSH 296 (1267)
T ss_pred cccccccccceEEEEeecceeEEEee---cceEEEeecCcccccCCcCchh-hcCchhhhhhHhhcchhhhhhhhcccce
Confidence 99999988999999999999999999 9999999999999999975332 23344444332 12 268999999999
Q ss_pred EEEEcCCCcEEEeeCCCCCCCCC-------CCcccc-CCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCC
Q 013470 247 SAALSAEGHLYTWGRGFNSTSDV-------NCPQSL-PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVS 318 (442)
Q Consensus 247 s~~lt~~G~vy~wG~~~~~~~~~-------~~p~~i-~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~ 318 (442)
+++.+.. .||.||.| .||++. ..|+.+ +....|..++|....+++++.++.+|++-+-..--+.. ...
T Consensus 297 sVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~--n~~ 372 (1267)
T KOG0783|consen 297 SVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPF--NVD 372 (1267)
T ss_pred eeeeecc-eEEEeccc-CceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEEecccceecCc--chh
Confidence 9999864 79999987 477764 344333 45778999999999999999999999986532221111 000
Q ss_pred CCCccccceeeec----cCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCC
Q 013470 319 STRPLSVALEKVS----NLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGE 390 (442)
Q Consensus 319 ~~~~~~~~~~~~~----~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~ 390 (442)
. ..-..+. .+.-.++.+..+...--++++ .-|.||.|-.++
T Consensus 373 ~-----lks~~V~gg~l~~~~~~~~k~~a~~~kll~lt--------------------------e~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 373 F-----LKSLKVTGGPLSLTRFNVRKLLASENKLLVLT--------------------------ELGEVYEWDSKN 417 (1267)
T ss_pred c-----cceeEEecCccchhhhhhhhcchhhhheeeec--------------------------cCCeEEEEecCC
Confidence 0 0000010 011135666777777788888 999999998655
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-21 Score=201.18 Aligned_cols=339 Identities=19% Similarity=0.253 Sum_probs=219.0
Q ss_pred cccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCC
Q 013470 30 EQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEM 109 (442)
Q Consensus 30 ~~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~ 109 (442)
...+|+||..|... .+|.-..... -++++-.++|++|+.|-....|+.--. +|-++.-|... ..|.
T Consensus 494 qa~sGKvYYaGn~t--~~Gl~e~G~n----WmEL~l~~~IVq~SVG~D~~~~~~~A~---~G~I~~v~D~k--~~~~--- 559 (3738)
T KOG1428|consen 494 QARSGKVYYAGNGT--RFGLFETGNN----WMELCLPEPIVQISVGIDTIMFRSGAG---HGWIASVDDKK--RNGR--- 559 (3738)
T ss_pred hhcCccEEEecCcc--EEeEEccCCc----eEEecCCCceEEEEeccchhheeeccC---cceEEeccCcc--cccc---
Confidence 46779999999643 4554322221 122222369999999988777766510 45555555221 1111
Q ss_pred cCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc
Q 013470 110 VDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH 189 (442)
Q Consensus 110 ~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h 189 (442)
-+++. +..+.+|++|.+...-.-++.++|++|..|....- .......+..+.+.-|.+++.|..|
T Consensus 560 -----~Rr~~--P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH 624 (3738)
T KOG1428|consen 560 -----LRRLV--PSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSH 624 (3738)
T ss_pred -----hhhcC--CCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeehhhccccc
Confidence 11111 11226788887655555578999999999965421 1122334556777789999999999
Q ss_pred eEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEee-------------ccCCCcEEEEEecCCeE--EEE----
Q 013470 190 SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTI-------------GLHDIEIVGISANGDRS--AAL---- 250 (442)
Q Consensus 190 ~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~-------------~~~~~~i~~i~~g~~~s--~~l---- 250 (442)
.+++++ +|+||.||.|+.+|+|+-. +......|+.-. .+.+...+...||.-.. ++-
T Consensus 625 ~~av~r---NG~l~T~GlNN~~QCGRVE-s~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~ 700 (3738)
T KOG1428|consen 625 GVAVTR---NGHLFTWGLNNMNQCGRVE-STSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVP 700 (3738)
T ss_pred eeEEEe---CCeEEEEecCCcccccccc-cccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCC
Confidence 999999 9999999999999999853 222222222111 12223344444443221 111
Q ss_pred cCCCcEEEeeCCCCCCC---------------------------------CCCCcccc-----CCCCCeeEEEeCCCeEE
Q 013470 251 SAEGHLYTWGRGFNSTS---------------------------------DVNCPQSL-----PSSLSFSQAALGWNHVL 292 (442)
Q Consensus 251 t~~G~vy~wG~~~~~~~---------------------------------~~~~p~~i-----~~~~~i~~i~~G~~~~~ 292 (442)
.-.|.+..+|.+..+.+ ....|..+ +.+.++.+|+||..|++
T Consensus 701 RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtV 780 (3738)
T KOG1428|consen 701 RPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTV 780 (3738)
T ss_pred CCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEE
Confidence 12344555555433321 11223222 34568999999999999
Q ss_pred EEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCcc
Q 013470 293 VLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPF 372 (442)
Q Consensus 293 ~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~ 372 (442)
+|.+|++||.+|+|.+||||.+++.+...| .++..+.+..|++|++|++|++++.
T Consensus 781 lL~sd~~VfTFG~~~HGQLG~GDt~Sk~~P-----q~V~~~~~t~~vQVaAGSNHT~l~~-------------------- 835 (3738)
T KOG1428|consen 781 LLASDRRVFTFGSNCHGQLGVGDTLSKNTP-----QQVILPSDTVIVQVAAGSNHTILRA-------------------- 835 (3738)
T ss_pred EEecCCcEEEecCCcccccCcCccccCCCc-----ceEEcCCCCceEEEecCCCceEEEe--------------------
Confidence 999999999999999999999998876654 5666677778999999999999999
Q ss_pred ceeeeccCCcEEEEECCCCCcccCCCCCCc---cCcEEEecCccccCCCceEEEecCCCeEEEe
Q 013470 373 FINVIAENRAIMTWGWGEHGQLGLGNTCDQ---IHPKVVNLGDEFQNRDTQLEVFCGSGFTYAI 433 (442)
Q Consensus 373 ~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~---~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l 433 (442)
.||+||.+|.-..|||+..-.+.. ..|-+++....- -+.+..+|-+-++.+++-
T Consensus 836 ------~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~-f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 836 ------NDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPG-FNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred ------cCCcEEEeccccCccccCccccccccccCCCcCCCCCcc-ccccceeeccCCCcceee
Confidence 999999999999999997554322 235555432211 122567777777776653
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-17 Score=174.15 Aligned_cols=304 Identities=20% Similarity=0.246 Sum_probs=197.0
Q ss_pred cEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEE--eCC
Q 013470 68 SVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVS--DSG 145 (442)
Q Consensus 68 ~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt--~~g 145 (442)
.-.++..+....++-+. +|+||-.|... .+|.-... .....+.+++ +|++++.|-+..+++. .+|
T Consensus 480 qtv~L~~~RE~A~iqa~-----sGKvYYaGn~t--~~Gl~e~G--~nWmEL~l~~----~IVq~SVG~D~~~~~~~A~~G 546 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQAR-----SGKVYYAGNGT--RFGLFETG--NNWMELCLPE----PIVQISVGIDTIMFRSGAGHG 546 (3738)
T ss_pred hheecccchhhhhhhhc-----CccEEEecCcc--EEeEEccC--CceEEecCCC----ceEEEEeccchhheeeccCcc
Confidence 55677888999999999 99999999654 34433222 2233344444 4999999999888876 455
Q ss_pred CEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeec
Q 013470 146 CLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSL 225 (442)
Q Consensus 146 ~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~ 225 (442)
.++.-|+... ...-.++......+|+.+.+...-.-.+++ +|++|..|... ......
T Consensus 547 ~I~~v~D~k~----------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSe---nGkifM~G~~t----------m~~n~S 603 (3738)
T KOG1428|consen 547 WIASVDDKKR----------NGRLRRLVPSNRRKIVHVCASGHVYGYVSE---NGKIFMGGLHT----------MRVNVS 603 (3738)
T ss_pred eEEeccCccc----------ccchhhcCCCCcceeEEEeeeeEEEEEEcc---CCeEEeeccee----------EEecch
Confidence 5666653321 111112222233578888665555556677 99999998632 122223
Q ss_pred CeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCcccc---------------C-------CCCCeeE
Q 013470 226 PQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSL---------------P-------SSLSFSQ 283 (442)
Q Consensus 226 p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i---------------~-------~~~~i~~ 283 (442)
.+.+..+.+.-|.+++.|..|.++++.+|+||.||.|+.+|.+.-..... | .+.+.+-
T Consensus 604 Sqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VC 683 (3738)
T KOG1428|consen 604 SQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVC 683 (3738)
T ss_pred HHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchh
Confidence 44556677778999999999999999999999999999998764211110 0 0111111
Q ss_pred EEeCC----CeEEEE--ECCCcEEEEeCCCCcccCCC--------CCCCCC------------Cc--cccceeeec---c
Q 013470 284 AALGW----NHVLVL--TGDGEVLMLGGSHHGMLSDP--------ERVSST------------RP--LSVALEKVS---N 332 (442)
Q Consensus 284 i~~G~----~~~~~l--~~~G~vy~~G~n~~gqlG~~--------~~~~~~------------~~--~~~~~~~~~---~ 332 (442)
..||. .-++.- .-.|.+-.+|.++.+.+-.+ .....+ .+ ....|..+. .
T Consensus 684 a~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~ 763 (3738)
T KOG1428|consen 684 AQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQG 763 (3738)
T ss_pred hhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccC
Confidence 12221 111110 11355666666654443211 111000 00 011121111 1
Q ss_pred CCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcEEEecCc
Q 013470 333 LDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGD 412 (442)
Q Consensus 333 ~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~ 412 (442)
.-+.++.+|+||..|+++|. +|++||.+|.|-+||||.|++.+...|+.|.+++
T Consensus 764 ~Hdvkv~sVSCG~~HtVlL~--------------------------sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~ 817 (3738)
T KOG1428|consen 764 PHDVKVSSVSCGNFHTVLLA--------------------------SDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPS 817 (3738)
T ss_pred CcceeEEEEeccCceEEEEe--------------------------cCCcEEEecCCcccccCcCccccCCCcceEEcCC
Confidence 12458999999999999999 9999999999999999999999999999999998
Q ss_pred cccCCCceEEEecCCCeEEEecCCc
Q 013470 413 EFQNRDTQLEVFCGSGFTYAISRHC 437 (442)
Q Consensus 413 ~~~~~~~~~~i~~G~~~t~~l~~~~ 437 (442)
+. .+.+|++|..||++...+.
T Consensus 818 ~t----~~vQVaAGSNHT~l~~~DG 838 (3738)
T KOG1428|consen 818 DT----VIVQVAAGSNHTILRANDG 838 (3738)
T ss_pred CC----ceEEEecCCCceEEEecCC
Confidence 75 7899999999999988763
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=6.4e-12 Score=86.91 Aligned_cols=50 Identities=30% Similarity=0.525 Sum_probs=46.1
Q ss_pred CCcEEEEECCCCCccc-CCCCCCccCcEEEecCccccCCCceEEEecCCCeEEEe
Q 013470 380 NRAIMTWGWGEHGQLG-LGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAI 433 (442)
Q Consensus 380 ~g~v~~wG~n~~gqLG-~g~~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l 433 (442)
||+||+||.|++|||| .++..+...|++|+.+... +|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~----~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGV----RIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTS----EEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCC----CEEEEEeCcceEEEC
Confidence 6899999999999999 7778899999999988764 899999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.21 E-value=1.2e-11 Score=85.53 Aligned_cols=50 Identities=36% Similarity=0.590 Sum_probs=46.4
Q ss_pred ccEEEEecCCCCCCCC-CCCCCCccCCeEEecCCCCcEEEEEeCCceeEEE
Q 013470 33 VVKVWSWGAGTDGQLG-TGRLHDELSPQLLNLSSLSSVSMLACGGAHVLAL 82 (442)
Q Consensus 33 ~~~v~~~G~n~~gqLG-~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~l 82 (442)
+|+||+||.|.+|||| .+.......|+++..+...+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 5899999999999999 7777788899999999889999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.01 E-value=4e-10 Score=68.02 Aligned_cols=30 Identities=27% Similarity=0.603 Sum_probs=25.9
Q ss_pred EEEEeecCceEEEEEeCCCEEEeCCCCCcc
Q 013470 128 ITHISAGWNHSGFVSDSGCLFTCGDGTFGQ 157 (442)
Q Consensus 128 i~~vs~G~~~s~~lt~~g~vy~~G~n~~gq 157 (442)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.1e-12 Score=130.58 Aligned_cols=191 Identities=24% Similarity=0.339 Sum_probs=145.7
Q ss_pred cCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCC
Q 013470 175 FVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEG 254 (442)
Q Consensus 175 ~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G 254 (442)
+...+|.+++||.+|+++++. .|+++.||.|.+||++++ ....... |..++.+.+.+..+|++|..|++++..
T Consensus 11 l~~k~~lq~~cGn~hclal~~---~g~~~~wg~~~~g~~~~~-~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~-- 83 (850)
T KOG0941|consen 11 LNYKHILQVGCGNNHCLALSC---AGELFVWGMNNNGQLGRA-LYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSS-- 83 (850)
T ss_pred HhhhhhhhhccccHHHHhhhc---cCCeeeccCCccchhhhh-ccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhh--
Confidence 334579999999999999999 999999999999999998 3333333 999999999999999999999999976
Q ss_pred cEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCC
Q 013470 255 HLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLD 334 (442)
Q Consensus 255 ~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
|+++++.+|.++.+|....||+|...... ...|..+..+.
T Consensus 84 -----------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~-----~~~~~~v~e~i 123 (850)
T KOG0941|consen 84 -----------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTEN-----EVLPLLVLELI 123 (850)
T ss_pred -----------------------------------chhhcchhccccccCCccccccccccccc-----ccccHHHHHHH
Confidence 99999999999999999999999943333 33344555556
Q ss_pred CccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccc
Q 013470 335 GVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEF 414 (442)
Q Consensus 335 ~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~ 414 (442)
+..+..|+||..|++++.. .-+++|..|.+..| .+.-.+...+ .+.-..+.
T Consensus 124 ~~~~t~ia~~~~ht~a~v~-------------------------~l~qsf~~~~~~sG---k~~i~s~s~~-~~l~~~d~ 174 (850)
T KOG0941|consen 124 GSRVTRIACVRGHTLAIVP-------------------------RLGQSFSFGKGASG---KGVIVSLSGE-DLLRDHDS 174 (850)
T ss_pred hhhhHHHHHHHHHHHhhhh-------------------------hhcceeecccCCCC---Cceeeccchh-hhcccccH
Confidence 7789999999999998872 67899999999987 1000111111 01111111
Q ss_pred cCCCceEEEecCCCeEEEecCCccCCC
Q 013470 415 QNRDTQLEVFCGSGFTYAISRHCLPSQ 441 (442)
Q Consensus 415 ~~~~~~~~i~~G~~~t~~l~~~~~~~~ 441 (442)
.....+..++.|++.++.+......+|
T Consensus 175 ~~~~~~~~~~~g~dq~~~l~~~~~~~~ 201 (850)
T KOG0941|consen 175 EKDHRCSLAFAGGDQTFSLSSKGENSQ 201 (850)
T ss_pred HHHHHHHHHhcCCCceEEEEeeccccc
Confidence 122255668999999999988877766
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.93 E-value=1.9e-09 Score=65.03 Aligned_cols=30 Identities=53% Similarity=1.004 Sum_probs=25.9
Q ss_pred EEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCC
Q 013470 69 VSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQ 103 (442)
Q Consensus 69 i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gq 103 (442)
|++|+||..|+++|++ ||+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~-----~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTS-----DGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE------TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEc-----CCCEEEEcCCcCCC
Confidence 7899999999999999 99999999999987
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.7e-11 Score=125.20 Aligned_cols=146 Identities=33% Similarity=0.616 Sum_probs=124.2
Q ss_pred CCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCc
Q 013470 57 SPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN 136 (442)
Q Consensus 57 ~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~ 136 (442)
.|+++......++.|++||.+|+++++. .|.+++||.|.+||+|.+.......|.+++.+.+ ....+|++|..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~-----~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g--~p~a~v~~g~~ 76 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSC-----AGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG--VPLAQVSAGEA 76 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhc-----cCCeeeccCCccchhhhhccCCCCCCccchhhcC--CcHHHHhcCCC
Confidence 3444444445689999999999999999 9999999999999999985554444999998888 78899999999
Q ss_pred eEEEEEe-------CCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCC
Q 013470 137 HSGFVSD-------SGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK 209 (442)
Q Consensus 137 ~s~~lt~-------~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~ 209 (442)
|++++.. +|+++.+|....+|+|+........|..+....+..++.|+||..|+.+...+ -|++|.+|.+.
T Consensus 77 hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~--l~qsf~~~~~~ 154 (850)
T KOG0941|consen 77 HSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPR--LGQSFSFGKGA 154 (850)
T ss_pred cchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhh--hcceeecccCC
Confidence 8876655 99999999999999999777777778777777778899999999999988776 78999999887
Q ss_pred CC
Q 013470 210 RG 211 (442)
Q Consensus 210 ~g 211 (442)
.|
T Consensus 155 sG 156 (850)
T KOG0941|consen 155 SG 156 (850)
T ss_pred CC
Confidence 76
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.48 E-value=3.8 Score=37.52 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=43.1
Q ss_pred cEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC--CeEEEEECCCcEEEEeCC
Q 013470 236 EIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW--NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 236 ~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~--~~~~~l~~~G~vy~~G~n 306 (442)
+|..|.--.+ +-+.=+.+|.|++|............|. .+..|.+++... ...++..+.|++|+|-.-
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 3444443333 4455688999999987654333333332 235677777664 455677889999999753
No 16
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.57 E-value=5.6 Score=39.47 Aligned_cols=215 Identities=11% Similarity=0.093 Sum_probs=110.9
Q ss_pred eEEEEeecC--ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeee
Q 013470 127 TITHISAGW--NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYG 204 (442)
Q Consensus 127 ~i~~vs~G~--~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~ 204 (442)
.+..+++.- ++.++=|..|.+|.|-.++--.|-. ..... ..|+.+....+-+++++. .+||.|.+
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----------~~aHY--Q~ITcL~fs~dgs~iiTg-skDg~V~v 149 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----------LSAHY--QSITCLKFSDDGSHIITG-SKDGAVLV 149 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH----------HHhhc--cceeEEEEeCCCcEEEec-CCCccEEE
Confidence 355555543 3333445789999996443111100 00011 357777777777777766 34889999
Q ss_pred eCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEE--cCCCcEEEeeCCCCCCCCCCC-ccccCCCC
Q 013470 205 FGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAAL--SAEGHLYTWGRGFNSTSDVNC-PQSLPSSL 279 (442)
Q Consensus 205 wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~l--t~~G~vy~wG~~~~~~~~~~~-p~~i~~~~ 279 (442)
|=.-+.-+ ........|.....-....|+++.+|.. .+.++ ..|..+.+|.... +... ....|...
T Consensus 150 W~l~~lv~-----a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----g~LLlti~fp~si 220 (476)
T KOG0646|consen 150 WLLTDLVS-----ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----GVLLLTITFPSSI 220 (476)
T ss_pred EEEEeecc-----cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----ceeeEEEecCCcc
Confidence 94322110 1111234455555545567888887765 22222 3455566664321 1111 11112222
Q ss_pred CeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccC----CCccEEEEeecCCeeEEEeCcc
Q 013470 280 SFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNL----DGVKVIQIAAGAEHSAVVTGKF 355 (442)
Q Consensus 280 ~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~----~~~~I~~I~~G~~~s~~l~~~~ 355 (442)
.-..+.-+..+.++=+++|++|..-.+..- |...... ........+++..+ ....|+.++...+-++++.|+
T Consensus 221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~--~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd- 296 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTEEGKIFQNLLFKLS--GQSAGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD- 296 (476)
T ss_pred eeEEEcccccEEEecCCcceEEeeehhcCC--ccccccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeC-
Confidence 333344566777777888888874322110 0000000 00011112222222 235788888889999999987
Q ss_pred cceeeeEeccCCCCCccceeeeccCCcEEEEECCC
Q 013470 356 HWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGE 390 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~ 390 (442)
+||+|-.|--.+
T Consensus 297 -----------------------~dg~VcvWdi~S 308 (476)
T KOG0646|consen 297 -----------------------EDGKVCVWDIYS 308 (476)
T ss_pred -----------------------CCCCEEEEecch
Confidence 999999997654
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.19 E-value=6 Score=40.49 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=68.6
Q ss_pred ecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcc-cceEEeecCCCceEEEEeCC-CceEEEEeecCCCeeee-eCCCC
Q 013470 133 AGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHS-SPVKVSSFVNKNVHQIACGM-RHSLVLLKDCLGNQVYG-FGSGK 209 (442)
Q Consensus 133 ~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~-~p~~v~~~~~~~I~~I~~G~-~h~~~lt~~~~~G~vy~-wG~n~ 209 (442)
.|.....+|.++|++|.= -|.....+.- .-+.+... .++++|++|. ....+++. +|.|+. .|-..
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~---nG~vf~R~GVsR 257 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTE---NGAVFYREGVSR 257 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCC--CccceEeecCcceEEEEee---CCcEEEEecccc
Confidence 344555677888887742 2222111111 11112211 3689999998 78999999 898875 47666
Q ss_pred CCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEe
Q 013470 210 RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTW 259 (442)
Q Consensus 210 ~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~w 259 (442)
.++.|.. =+.+..|.... .++.|+.|.....+||.+|.+|+-
T Consensus 258 qNp~Gds---WkdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 258 QNPEGDS---WKDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred cCCCCch---hhhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 6665533 23444554432 389999999999999999999974
No 18
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.11 E-value=5.8 Score=45.71 Aligned_cols=293 Identities=16% Similarity=0.104 Sum_probs=142.4
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEe--------------eec-CCCc---ceE
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPV--------------TFF-DGHR---YTI 128 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i--------------~~~-~~~~---~~i 128 (442)
...+.|.....+-++.+. +|+||..-.... +.....-...|... ..+ .+.. .-.
T Consensus 489 a~A~~VgLs~drLFvADs-----eGkLYsa~l~~~---~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAl 560 (1774)
T PF11725_consen 489 AQAQSVGLSNDRLFVADS-----EGKLYSADLPAA---QDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHAL 560 (1774)
T ss_pred hhhhheeecCCeEEEEeC-----CCCEEecccccc---cCCCcceEeccccccccccccccccceeeccccCCCCeeeEE
Confidence 367778887777777777 999998543321 11111111222222 100 0000 112
Q ss_pred EEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcc---cceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeee
Q 013470 129 THISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHS---SPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGF 205 (442)
Q Consensus 129 ~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~---~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~w 205 (442)
++=..|..|++.|.+++.=|-=|+|-...|=+.+..-.. .|.. -..+-.|..-.++|.+ |+|+.|
T Consensus 561 ikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~--------~~~ldl~r~G~v~L~~----G~i~~w 628 (1774)
T PF11725_consen 561 IKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAP--------HEILDLGRAGLVGLQD----GKIQYW 628 (1774)
T ss_pred EeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCCh--------HHhhccccccceeecc----ceEeee
Confidence 222446677777777777666666654333222221111 1111 1112234455666665 999988
Q ss_pred CCCC----------CCCCCCCCCCCceeecCeEeeccC-CCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccc
Q 013470 206 GSGK----------RGQLGVSKDRIRSVSLPQVTIGLH-DIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQS 274 (442)
Q Consensus 206 G~n~----------~gqlg~~~~~~~~~~~p~~v~~~~-~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~ 274 (442)
-... ..||-++.+....+..--.+..+. ..+--.|+-|.++.++++.--.-+-.|. . ..
T Consensus 629 D~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~--------~--l~ 698 (1774)
T PF11725_consen 629 DSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGD--------A--LE 698 (1774)
T ss_pred cCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCc--------c--cc
Confidence 4322 222333333322222111111110 0011233444455555443211111111 1 11
Q ss_pred cCCCCCeeEEEe-CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCC-eeEEEe
Q 013470 275 LPSSLSFSQAAL-GWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAE-HSAVVT 352 (442)
Q Consensus 275 i~~~~~i~~i~~-G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~-~s~~l~ 352 (442)
-.....|..++. +.+++++|++.|+|-..- .-|. +.+...+.+++ .|++|+.-.. +-++++
T Consensus 699 Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g~--------------p~~l~~~gl~G-~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 699 GLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPGR--------------PVPLSRPGLSG-EIKDLALDEKQNLYALT 761 (1774)
T ss_pred CCCcCcceeEEEEcCCceEEeccCCcccccc--CCCC--------------CccCCCCCCCc-chhheeeccccceeEec
Confidence 113456666664 789999999999887642 1111 11122223433 8999999877 456777
Q ss_pred CcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccccCCCceEEEecCCCeEEE
Q 013470 353 GKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYA 432 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~ 432 (442)
.+|++|..=.-.+-..-.+ ......+++|.++.+- .+..+....+|.+.
T Consensus 762 --------------------------~~G~Lf~~~k~~WQ~~~~~-~~~~~~W~~v~lP~~~----~v~~l~~~~~~~l~ 810 (1774)
T PF11725_consen 762 --------------------------STGELFRLPKEAWQGNAEG-DQMAAKWQKVALPDEQ----PVKSLRTNDDNHLS 810 (1774)
T ss_pred --------------------------CCCceeecCHHHhhCcccC-CccccCceeccCCCCC----chhhhhcCCCCceE
Confidence 9999997543332111111 1122556677766543 67778888888777
Q ss_pred ecCCc
Q 013470 433 ISRHC 437 (442)
Q Consensus 433 l~~~~ 437 (442)
+.-+.
T Consensus 811 ~~~~d 815 (1774)
T PF11725_consen 811 AQIED 815 (1774)
T ss_pred EEecC
Confidence 66544
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=89.99 E-value=4.7 Score=41.18 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=62.2
Q ss_pred ecCCeEEEEcCCCcEEEee-CCCCCCCCCCCccccCCCCCeeEEEeCC-CeEEEEECCCcEEE-EeCCCCcccCCCCCCC
Q 013470 242 ANGDRSAALSAEGHLYTWG-RGFNSTSDVNCPQSLPSSLSFSQAALGW-NHVLVLTGDGEVLM-LGGSHHGMLSDPERVS 318 (442)
Q Consensus 242 ~g~~~s~~lt~~G~vy~wG-~~~~~~~~~~~p~~i~~~~~i~~i~~G~-~~~~~l~~~G~vy~-~G~n~~gqlG~~~~~~ 318 (442)
.|.....||..+|++|.=- -......+ ..-+.+....++.+|++|. .-.-+++++|.||. .|-....+.|..=. .
T Consensus 190 ~g~~~awAI~s~Gd~y~RtGvs~~~P~G-raW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-d 267 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLRTGVSVDRPCG-RAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-D 267 (705)
T ss_pred CCceEEEEEecCCcEEEeccccCCCCCC-ceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-h
Confidence 5566788999999999731 11111111 1112233445799999999 66778999999876 47666555554211 1
Q ss_pred CCCccccceeeeccCCCccEEEEeecCCeeEEEe
Q 013470 319 STRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVT 352 (442)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~ 352 (442)
...|... ..++.|+.|.....+|+
T Consensus 268 -----I~tP~~a-----~~~v~iSvGt~t~Wald 291 (705)
T KOG3669|consen 268 -----IVTPRQA-----LEPVCISVGTQTLWALD 291 (705)
T ss_pred -----ccCcccc-----cceEEEEeccceEEEEe
Confidence 1112211 13899999999999999
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.68 E-value=42 Score=35.78 Aligned_cols=224 Identities=17% Similarity=0.136 Sum_probs=112.5
Q ss_pred cccEEEEecCCCCCCCCCCCCCCccC--CeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCC
Q 013470 32 QVVKVWSWGAGTDGQLGTGRLHDELS--PQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEM 109 (442)
Q Consensus 32 ~~~~v~~~G~n~~gqLG~~~~~~~~~--p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~ 109 (442)
..|+=.++|+...|||+.=.-..+.. .+. ....++..++-...-.++.|--. ||+|-+|-..+..
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaTG~e---DgKVKvWn~~Sgf------- 383 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIATGAE---DGKVKVWNTQSGF------- 383 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEeccC---CCcEEEEeccCce-------
Confidence 45778899999999998754333321 111 11235555555555444444311 7888888654321
Q ss_pred cCeecceEeeecCC-CcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC
Q 013470 110 VDALYPKPVTFFDG-HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR 188 (442)
Q Consensus 110 ~~~~~p~~i~~~~~-~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~ 188 (442)
-.+.+-+. .....+++..-.+..+...-||+|-+|-..++-. +..-..|.++.+
T Consensus 384 ------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fRTft~P~p~Qf-------------- 438 (893)
T KOG0291|consen 384 ------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FRTFTSPEPIQF-------------- 438 (893)
T ss_pred ------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-----eeeecCCCceee--------------
Confidence 11222111 0133555666666666667799999998665421 122233433332
Q ss_pred ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC---CeEEEEcCCC----------c
Q 013470 189 HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG---DRSAALSAEG----------H 255 (442)
Q Consensus 189 h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G----------~ 255 (442)
.+++++. .|.|.+-|.-+.- ...+-.++.-++.+|-+|. -+.+.+.-.| .
T Consensus 439 scvavD~---sGelV~AG~~d~F--------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 439 SCVAVDP---SGELVCAGAQDSF--------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eEEEEcC---CCCEEEeeccceE--------------EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 1234444 4655555542211 1111111111222222221 1233333333 4
Q ss_pred EEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCC
Q 013470 256 LYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGGSHHGMLSDP 314 (442)
Q Consensus 256 vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~n~~gqlG~~ 314 (442)
|..|- ...+.+.-.+ ++...++..++.. ..-.++.|-||++-.|-.+...|+|.-
T Consensus 502 VRiW~--if~s~~~vEt--l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 502 VRIWD--IFSSSGTVET--LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred EEEEE--eeccCceeee--EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 44442 2222222222 2334455555554 667788888999999999999999653
No 21
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=86.32 E-value=38 Score=33.86 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=43.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEE--eCCCEEEeCCCCCcccCCCCCCCcc
Q 013470 90 GGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVS--DSGCLFTCGDGTFGQLGHGDYRSHS 167 (442)
Q Consensus 90 dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt--~~g~vy~~G~n~~gqlG~~~~~~~~ 167 (442)
.+++|.|=-++. .++..+..+...|+.+....+-++++| +||.|.+|=.-.-- ... ...
T Consensus 102 ~g~lYlWelssG--------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv---~a~--~~~ 162 (476)
T KOG0646|consen 102 SGNLYLWELSSG--------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV---SAD--NDH 162 (476)
T ss_pred cCcEEEEEeccc--------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec---ccc--cCC
Confidence 788888875432 223333333455777766666666665 78999999522110 001 111
Q ss_pred cceEEeecC--CCceEEEEeCCC
Q 013470 168 SPVKVSSFV--NKNVHQIACGMR 188 (442)
Q Consensus 168 ~p~~v~~~~--~~~I~~I~~G~~ 188 (442)
.|.++..+. ...|+++.+|..
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred CccceeeeccCcceeEEEEecCC
Confidence 333333332 256888777654
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=0.067 Score=58.09 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=86.4
Q ss_pred CceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEee-ccCCCcEEEEEecCCeEEEEcCCCcE
Q 013470 178 KNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTI-GLHDIEIVGISANGDRSAALSAEGHL 256 (442)
Q Consensus 178 ~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~-~~~~~~i~~i~~g~~~s~~lt~~G~v 256 (442)
.+++.|.+-....++|.+ .|++|.|-+....-+-......+....|.... .+.+.+|+.+++..-..-++|++|+|
T Consensus 374 n~~I~I~A~s~el~Alhr---kGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHR---KGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CeeEEeehhHHHHHHHhh---CCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 468888888888999999 99999998765543322212223333343322 35678999999998899999999999
Q ss_pred EEeeCCCC----CCCCCCCcccc-CCCCCeeEEEeCCCeEEEEECCCcEEEEeCCC
Q 013470 257 YTWGRGFN----STSDVNCPQSL-PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSH 307 (442)
Q Consensus 257 y~wG~~~~----~~~~~~~p~~i-~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~ 307 (442)
..|=.... ..+....-+++ .....+++.-|...|.++..+|..+|-||--.
T Consensus 451 asWlDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 451 ASWLDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hhHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 99944211 11111122222 23556777788889999999999999999543
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.14 E-value=31 Score=31.81 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=60.9
Q ss_pred ceEeeecCCCcceEEEE--eecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeC--CCce
Q 013470 115 PKPVTFFDGHRYTITHI--SAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG--MRHS 190 (442)
Q Consensus 115 p~~i~~~~~~~~~i~~v--s~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G--~~h~ 190 (442)
|.++..++.+..+|..| .|-....+-=.+||.+-+|-.-. +.. +...... .+|..|.-- ..+.
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~--------qR~~~~~--spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSC--------QRNYQHN--SPVNTVVLHPNQTEL 139 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---ccc--------chhccCC--CCcceEEecCCcceE
Confidence 44444444433445544 44444445556889998886322 111 1111111 234444333 3344
Q ss_pred EEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCC
Q 013470 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 191 ~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~ 262 (442)
+.-+. +|.|+.|-... ........|... ..|.++.... ...++.++.|++|+|-.-
T Consensus 140 is~dq---sg~irvWDl~~--------~~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 140 ISGDQ---SGNIRVWDLGE--------NSCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred EeecC---CCcEEEEEccC--------CccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 44455 89999994321 112222233222 3466655544 566778999999999753
No 24
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=83.76 E-value=7.7 Score=44.77 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=65.3
Q ss_pred cCCCcEEEEE-ecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCC---CCCeeEEEeCCCeE-EEEECCCcEEE----
Q 013470 232 LHDIEIVGIS-ANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPS---SLSFSQAALGWNHV-LVLTGDGEVLM---- 302 (442)
Q Consensus 232 ~~~~~i~~i~-~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~---~~~i~~i~~G~~~~-~~l~~~G~vy~---- 302 (442)
+++..|..++ .+.++.++|++.|++-..= . ...|..++. .-+|++|++=..|. +|++.+|+||.
T Consensus 700 l~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~ 772 (1774)
T PF11725_consen 700 LEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----PGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKE 772 (1774)
T ss_pred CCcCcceeEEEEcCCceEEeccCCcccccc--C-----CCCCccCCCCCCCcchhheeeccccceeEecCCCceeecCHH
Confidence 3444454443 3678999999999987752 1 122555543 36899999987754 57899999997
Q ss_pred -EeCCCCc-ccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEe
Q 013470 303 -LGGSHHG-MLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVT 352 (442)
Q Consensus 303 -~G~n~~g-qlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~ 352 (442)
|-.+..+ ++. ..+.+ +..+.+.+|..+....+|.+.+.
T Consensus 773 ~WQ~~~~~~~~~----------~~W~~--v~lP~~~~v~~l~~~~~~~l~~~ 812 (1774)
T PF11725_consen 773 AWQGNAEGDQMA----------AKWQK--VALPDEQPVKSLRTNDDNHLSAQ 812 (1774)
T ss_pred HhhCcccCCccc----------cCcee--ccCCCCCchhhhhcCCCCceEEE
Confidence 4333222 110 12333 33335668999999999998888
No 25
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.01 E-value=8.9 Score=34.94 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=42.4
Q ss_pred CcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccc----c--------CCCCCeeEEEeC-CCeEEEEECCCcEE
Q 013470 235 IEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQS----L--------PSSLSFSQAALG-WNHVLVLTGDGEVL 301 (442)
Q Consensus 235 ~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~----i--------~~~~~i~~i~~G-~~~~~~l~~~G~vy 301 (442)
.+++.+.|...+.++||.+|.+|+|--..... ...+.. + .....|+.+... ...-++...+|+.|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~--~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKA--VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCee--ccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 46888999999999999999999996543222 111111 1 133455555544 33344555667777
Q ss_pred EEe
Q 013470 302 MLG 304 (442)
Q Consensus 302 ~~G 304 (442)
.|-
T Consensus 91 ~y~ 93 (219)
T PF07569_consen 91 SYS 93 (219)
T ss_pred Eec
Confidence 764
No 26
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=80.41 E-value=0.22 Score=54.40 Aligned_cols=130 Identities=11% Similarity=0.018 Sum_probs=84.4
Q ss_pred CcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCC--CCCCcccceE-EeecCCCceEEEEeCCCceEEEEeecCCC
Q 013470 124 HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHG--DYRSHSSPVK-VSSFVNKNVHQIACGMRHSLVLLKDCLGN 200 (442)
Q Consensus 124 ~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~--~~~~~~~p~~-v~~~~~~~I~~I~~G~~h~~~lt~~~~~G 200 (442)
...+++.|.+-.+..++|..+|++|.|-....--+-.+ .......|.. ...+.+.+|+.+++..-..-++|+ +|
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~---ng 448 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE---NG 448 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec---CC
Confidence 34678888888888899999999999987654333221 1122223322 123456799999999999999999 99
Q ss_pred eeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeC
Q 013470 201 QVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR 261 (442)
Q Consensus 201 ~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~ 261 (442)
+|.+|=+- +|.+ ...+.....+.........+++.-|...|..+...+..+|.||-
T Consensus 449 hlasWlDE----cgag-V~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 449 HLASWLDE----CGAG-VAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred chhhHHhh----hhhh-hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 99999321 1111 01111111111112334456777788889999999999999996
No 27
>PHA02713 hypothetical protein; Provisional
Probab=80.13 E-value=62 Score=34.03 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=9.5
Q ss_pred cCCcEEEEECCC
Q 013470 379 ENRAIMTWGWGE 390 (442)
Q Consensus 379 ~~g~v~~wG~n~ 390 (442)
-+|++|+.|..+
T Consensus 511 ~~~~iyv~Gg~~ 522 (557)
T PHA02713 511 HDNTIMMLHCYE 522 (557)
T ss_pred ECCEEEEEeeec
Confidence 489999998754
No 28
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.52 E-value=1e+02 Score=32.23 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=96.2
Q ss_pred cceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecC--CCceEEEEeCC-Cce
Q 013470 114 YPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV--NKNVHQIACGM-RHS 190 (442)
Q Consensus 114 ~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~I~~I~~G~-~h~ 190 (442)
.+..+..+..+...|..|.+.....+.-+.||.|-+|-... -+-+..+. ...|..+..+. .+.
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~--------------~~cl~sl~gH~~~V~sl~~~~~~~~ 385 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT--------------GKCLKSLSGHTGRVYSLIVDSENRL 385 (537)
T ss_pred CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh--------------ceeeeeecCCcceEEEEEecCcceE
Confidence 45555555544467999999999999999999999995431 11222221 24577776666 666
Q ss_pred EEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC
Q 013470 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN 270 (442)
Q Consensus 191 ~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~ 270 (442)
+=-.- |+.|-.|-.....++ .........-+..+.+-.++-+-=..+|.|..|..+....+...
T Consensus 386 ~Sgs~---D~~IkvWdl~~~~~c-------------~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 386 LSGSL---DTTIKVWDLRTKRKC-------------IHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred Eeeee---ccceEeecCCchhhh-------------hhhhcCCcccccccccccceeEeccccccEEEeecccCceeeee
Confidence 66666 787888854322111 00000011112334444555555567889999966655544322
Q ss_pred CccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCccc
Q 013470 271 CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGML 311 (442)
Q Consensus 271 ~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gql 311 (442)
.-. ....|..++.+....++-..+|.+.-| +-..+++
T Consensus 450 ~~~---~~~~v~~l~~~~~~il~s~~~~~~~l~-dl~~~~~ 486 (537)
T KOG0274|consen 450 EGR---HVGGVSALALGKEEILCSSDDGSVKLW-DLRSGTL 486 (537)
T ss_pred ccC---CcccEEEeecCcceEEEEecCCeeEEE-ecccCch
Confidence 211 234566666666778888889999998 3333333
No 29
>PHA03098 kelch-like protein; Provisional
Probab=71.27 E-value=1.3e+02 Score=31.16 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=9.9
Q ss_pred EEEeCCCEEEeCC
Q 013470 140 FVSDSGCLFTCGD 152 (442)
Q Consensus 140 ~lt~~g~vy~~G~ 152 (442)
+..-+|+||++|-
T Consensus 385 ~~~~~~~iYv~GG 397 (534)
T PHA03098 385 VVNVNNLIYVIGG 397 (534)
T ss_pred EEEECCEEEEECC
Confidence 3456789999985
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.05 E-value=24 Score=32.15 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=24.4
Q ss_pred eEEEEeecCceEEEEEeCCCEEEeCCCC
Q 013470 127 TITHISAGWNHSGFVSDSGCLFTCGDGT 154 (442)
Q Consensus 127 ~i~~vs~G~~~s~~lt~~g~vy~~G~n~ 154 (442)
.+..+.|-..+.++||++|.+|+|--..
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 4788999999999999999999997544
No 31
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.28 E-value=63 Score=31.76 Aligned_cols=57 Identities=21% Similarity=0.080 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEE
Q 013470 244 GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLML 303 (442)
Q Consensus 244 ~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~ 303 (442)
..+.++.+.+|.||++-... ++.--. ..+....-...-..-..+.++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~~~--~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFVAR--LKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEEE--EEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 35667778889999985432 221100 0011111111222333568888899999986
No 32
>PHA02713 hypothetical protein; Provisional
Probab=66.47 E-value=1.2e+02 Score=31.86 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=13.6
Q ss_pred cCceEEEEEeCCCEEEeCCC
Q 013470 134 GWNHSGFVSDSGCLFTCGDG 153 (442)
Q Consensus 134 G~~~s~~lt~~g~vy~~G~n 153 (442)
.+.+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444455667999999963
No 33
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=66.06 E-value=1.2e+02 Score=32.07 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=26.9
Q ss_pred CCCcEEEeeCCCCCCC-CCCCccccCCCCCeeEEEeC---CCeEEEEECCCcEEEEeCCC
Q 013470 252 AEGHLYTWGRGFNSTS-DVNCPQSLPSSLSFSQAALG---WNHVLVLTGDGEVLMLGGSH 307 (442)
Q Consensus 252 ~~G~vy~wG~~~~~~~-~~~~p~~i~~~~~i~~i~~G---~~~~~~l~~~G~vy~~G~n~ 307 (442)
-+|+||+.|-...... -......-|.......++.. ..+.-+..-++.||+.|-..
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc
Confidence 4789999997444331 11111111223333333221 11222444479999998543
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=64.45 E-value=1.3e+02 Score=31.73 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=30.6
Q ss_pred EcCCCcEEEeeCCCCCCCCCCC-ccccCCCCCeeEE---EeCCCeEEEEECCCcEEEEeC
Q 013470 250 LSAEGHLYTWGRGFNSTSDVNC-PQSLPSSLSFSQA---ALGWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 250 lt~~G~vy~wG~~~~~~~~~~~-p~~i~~~~~i~~i---~~G~~~~~~l~~~G~vy~~G~ 305 (442)
..-++.||+.|.... +..... ...-|.......+ .....+.-+..-++++|+-|-
T Consensus 472 a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 334689999997544 211111 1112333344443 345556556666899999985
No 35
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=63.65 E-value=17 Score=22.07 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.6
Q ss_pred cEEEEEecC-CeEEEEcCCCcEEEe
Q 013470 236 EIVGISANG-DRSAALSAEGHLYTW 259 (442)
Q Consensus 236 ~i~~i~~g~-~~s~~lt~~G~vy~w 259 (442)
++++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 889999999999974
No 36
>PLN02153 epithiospecifier protein
Probab=63.55 E-value=1.5e+02 Score=28.77 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=12.5
Q ss_pred CceeEEEeCCCcccCCeEEEEeCC
Q 013470 76 GAHVLALTSPSSVIGGKVFSWGRG 99 (442)
Q Consensus 76 ~~h~~~lt~~~~~~dg~v~~wG~n 99 (442)
..|++++. ++++|++|--
T Consensus 129 ~~~~~~~~------~~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMASD------ENHVYVFGGV 146 (341)
T ss_pred eeeEEEEE------CCEEEEECCc
Confidence 35666554 5899999854
No 37
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=63.31 E-value=1.7e+02 Score=29.41 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=74.7
Q ss_pred eEEEEeecC-ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEe--ecCCCceEEEEeCCCceEEEEeecCCCeee
Q 013470 127 TITHISAGW-NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS--SFVNKNVHQIACGMRHSLVLLKDCLGNQVY 203 (442)
Q Consensus 127 ~i~~vs~G~-~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~--~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy 203 (442)
+|+.+.-.. ...++|++||.++..- -+|.. ....+..+. ...+.++-.+..+..-.++|+. ++++|
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~---~~~~~ 150 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG---NNRFY 150 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECC---CCeEE
Confidence 566665533 4678889999987763 22332 111111111 1112234444556566888898 89999
Q ss_pred eeCCCCCC-CCCCCCCCCceeecCeEeecc---C-CCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCC
Q 013470 204 GFGSGKRG-QLGVSKDRIRSVSLPQVTIGL---H-DIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSS 278 (442)
Q Consensus 204 ~wG~n~~g-qlg~~~~~~~~~~~p~~v~~~---~-~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~ 278 (442)
..=+.... .+..- ...|...... . ...+..+......-+.+...+.++..-.+...+ +...
T Consensus 151 ~v~n~~~~~~~~~~------~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------i~~~ 216 (410)
T PF04841_consen 151 VVNNIDEPVKLRRL------PEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------IDSD 216 (410)
T ss_pred EEeCccccchhhcc------ccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------ccCC
Confidence 87332211 00000 0122221111 0 111212222223334444455566443322211 3344
Q ss_pred CCeeEEEeC--CCeEEEEECCCcEEEEe
Q 013470 279 LSFSQAALG--WNHVLVLTGDGEVLMLG 304 (442)
Q Consensus 279 ~~i~~i~~G--~~~~~~l~~~G~vy~~G 304 (442)
.++.+|+.. ..+.++++.+|++|..-
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 578888776 45666678889998863
No 38
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=62.45 E-value=1.4e+02 Score=33.95 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=69.1
Q ss_pred eeecCCCcceEEEEeecCce-EEEEE--eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEE-eCCCceEEE
Q 013470 118 VTFFDGHRYTITHISAGWNH-SGFVS--DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIA-CGMRHSLVL 193 (442)
Q Consensus 118 i~~~~~~~~~i~~vs~G~~~-s~~lt--~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~-~G~~h~~~l 193 (442)
|..+-.+...+.+++....| +++++ +||.|-+|-.-. -.|.+.. . .-...-.+.+.++..+. |++.+.+|+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s-~--rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGS-A--RSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcce-e--eeeEEEeccCCceEEEEeccCCCeEEE
Confidence 33333334567788888888 77775 799999996432 1222111 0 11111222445666665 667777777
Q ss_pred EeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeecc-CCCcEEEEEecC----C-eEEEEcCCCcEEEeeCC
Q 013470 194 LKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL-HDIEIVGISANG----D-RSAALSAEGHLYTWGRG 262 (442)
Q Consensus 194 t~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~i~~i~~g~----~-~s~~lt~~G~vy~wG~~ 262 (442)
..+ ||.|-..+-+.+.+ .+....-..+... ....++++-+-. + -.++.|..+.+..|+..
T Consensus 1116 ~t~--DG~v~~~~id~~~~-------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1116 STK--DGSVRVLRIDHYNV-------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EcC--CCeEEEEEcccccc-------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 654 99998887654311 1111111111111 122344443321 2 34567888899999753
No 39
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=59.30 E-value=2.8e+02 Score=30.57 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=34.8
Q ss_pred EEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEE
Q 013470 35 KVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFS 95 (442)
Q Consensus 35 ~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~ 95 (442)
.|++||++..=+-- ....+...|..+.. ....|..|++-..|.+.-++ ++.|-.
T Consensus 27 fi~tcgsdg~ir~~-~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~-----~~tv~~ 80 (933)
T KOG1274|consen 27 FICTCGSDGDIRKW-KTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSE-----QNTVLR 80 (933)
T ss_pred EEEEecCCCceEEe-ecCCcccCCchhhc-cCceeEEEeecccceEEeec-----cceEEE
Confidence 68999987532221 12233355666654 44688899998888888888 777544
No 40
>PHA03098 kelch-like protein; Provisional
Probab=57.34 E-value=2.4e+02 Score=29.24 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=10.9
Q ss_pred CeEEEEcCCCcEEEeeC
Q 013470 245 DRSAALSAEGHLYTWGR 261 (442)
Q Consensus 245 ~~s~~lt~~G~vy~wG~ 261 (442)
.|+++. -+|++|++|.
T Consensus 382 ~~~~~~-~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVVN-VNNLIYVIGG 397 (534)
T ss_pred cceEEE-ECCEEEEECC
Confidence 344443 4689999986
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.15 E-value=1.4e+02 Score=28.22 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=71.4
Q ss_pred cCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe--CC-CceEEEEeecCCCeeeeeCCC-C
Q 013470 134 GWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GM-RHSLVLLKDCLGNQVYGFGSG-K 209 (442)
Q Consensus 134 G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~--G~-~h~~~lt~~~~~G~vy~wG~n-~ 209 (442)
+.-|-++...||.||.-+... +.+|+-+-. ..+++.+.. |. -|.+++.. ||..|..-.. -
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gp---dg~~Witd~~~a 125 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDPA------------TGEVETYPLGSGASPHGIVVGP---DGSAWITDTGLA 125 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCCC------------CCceEEEecCCCCCCceEEECC---CCCeeEecCcce
Confidence 455777888999999765432 334432211 122333332 32 36777777 7877766332 1
Q ss_pred CCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCC-CCCCCCCCCccccCCCCCeeEE----
Q 013470 210 RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRG-FNSTSDVNCPQSLPSSLSFSQA---- 284 (442)
Q Consensus 210 ~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~-~~~~~~~~~p~~i~~~~~i~~i---- 284 (442)
-+.++......+....|. +..-+.-.+.+++..|+||.-|.+ .++.++-. ..+.+|
T Consensus 126 I~R~dpkt~evt~f~lp~-----------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--------~~~i~vfpaP 186 (353)
T COG4257 126 IGRLDPKTLEVTRFPLPL-----------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--------RNVISVFPAP 186 (353)
T ss_pred eEEecCcccceEEeeccc-----------ccCCCcccceeeCCCccEEEeeccccceecCcc--------cCceeeeccC
Confidence 122222111222222221 122234467889999999999873 33433221 112222
Q ss_pred EeCCCeEEEEECCCcEEEE
Q 013470 285 ALGWNHVLVLTGDGEVLML 303 (442)
Q Consensus 285 ~~G~~~~~~l~~~G~vy~~ 303 (442)
..+.-+-++.+-||.||.-
T Consensus 187 qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCCCcceEECCCCcEEEE
Confidence 2344566788899999986
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.63 E-value=3.3e+02 Score=29.44 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=81.3
Q ss_pred EecCCCCcEEEEEeCCce--eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCc-CeecceEeeecCCCcceEEEEeecCce
Q 013470 61 LNLSSLSSVSMLACGGAH--VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMV-DALYPKPVTFFDGHRYTITHISAGWNH 137 (442)
Q Consensus 61 v~~~~~~~i~~I~~G~~h--~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~-~~~~p~~i~~~~~~~~~i~~vs~G~~~ 137 (442)
..+|+..-|.+++.+.+- ++.+.. .|.-.++|...-|||..=+=. ..+...+ .++..++..++-...-
T Consensus 292 yelP~f~lih~LSis~~~I~t~~~N~-----tGDWiA~g~~klgQLlVweWqsEsYVlKQ----QgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 292 YELPDFNLIHSLSISDQKILTVSFNS-----TGDWIAFGCSKLGQLLVWEWQSESYVLKQ----QGHSDRITSLAYSPDG 362 (893)
T ss_pred EecCCceEEEEeecccceeeEEEecc-----cCCEEEEcCCccceEEEEEeeccceeeec----cccccceeeEEECCCC
Confidence 344555567777777554 455555 688888888777777642110 1111111 1112346666666665
Q ss_pred EEEEE--eCCCEEEeCCCCCcccCCCCCCCcccceEEee---cCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCC
Q 013470 138 SGFVS--DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSS---FVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQ 212 (442)
Q Consensus 138 s~~lt--~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~---~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gq 212 (442)
.++.| +||+|-+|-..+-- =.+.+ ....-.++.+.-.+..+-.+- ||.|-+|-...+
T Consensus 363 q~iaTG~eDgKVKvWn~~Sgf-------------C~vTFteHts~Vt~v~f~~~g~~llssSL---DGtVRAwDlkRY-- 424 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGF-------------CFVTFTEHTSGVTAVQFTARGNVLLSSSL---DGTVRAWDLKRY-- 424 (893)
T ss_pred cEEEeccCCCcEEEEeccCce-------------EEEEeccCCCceEEEEEEecCCEEEEeec---CCeEEeeeeccc--
Confidence 55554 78999888643310 01111 111223344444444444445 999999976544
Q ss_pred CCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeC
Q 013470 213 LGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR 261 (442)
Q Consensus 213 lg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~ 261 (442)
.+.+....|..+. ..+++++.+|+|.+.|.
T Consensus 425 -----rNfRTft~P~p~Q--------------fscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 425 -----RNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGA 454 (893)
T ss_pred -----ceeeeecCCCcee--------------eeEEEEcCCCCEEEeec
Confidence 2344444444332 22456666666666654
No 43
>PHA02790 Kelch-like protein; Provisional
Probab=52.01 E-value=2.2e+02 Score=29.32 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=11.2
Q ss_pred EEEEeCCCEEEeCCC
Q 013470 139 GFVSDSGCLFTCGDG 153 (442)
Q Consensus 139 ~~lt~~g~vy~~G~n 153 (442)
.+..-+|+||+.|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 445667999999863
No 44
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=51.51 E-value=3.8e+02 Score=29.72 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=63.0
Q ss_pred eCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEec-----CCeEEEEcCCCcEEEe
Q 013470 185 CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN-----GDRSAALSAEGHLYTW 259 (442)
Q Consensus 185 ~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g-----~~~s~~lt~~G~vy~w 259 (442)
...++.+++|+ .|++|..-...--..++. ..-......+....+++|+.+.+- ....+++|++|.+.-.
T Consensus 544 ~t~d~LllfTs---~Grv~~l~~~~IP~~~r~---~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 544 STHDYLLFFTN---RGKVYWLKVYQIPEASRT---AKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred cCCCeEEEEeC---CCcEEEEEhhhCcCCCcC---CCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 34556888888 999998733221111111 111111122222345667776652 2357888999977765
Q ss_pred eCCCCCC---CCCCCccccCCCCCeeEEEe--CCCeEEEEECCCcEEEEeCCCCccc
Q 013470 260 GRGFNST---SDVNCPQSLPSSLSFSQAAL--GWNHVLVLTGDGEVLMLGGSHHGML 311 (442)
Q Consensus 260 G~~~~~~---~~~~~p~~i~~~~~i~~i~~--G~~~~~~l~~~G~vy~~G~n~~gql 311 (442)
-...+.. .+.. -..+..+..+..+.. ...+.+++|++|++|.+-...--..
T Consensus 618 ~l~~~~~~~r~G~~-aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~ 673 (800)
T TIGR01063 618 SLTEFSNIRSNGII-AIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPM 673 (800)
T ss_pred EhHHhhhhccCCcc-cccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCc
Confidence 4332211 1110 011123444554433 3456889999999999866544333
No 45
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.23 E-value=4.1e+02 Score=30.04 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.7
Q ss_pred eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCC
Q 013470 246 RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 246 ~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n 306 (442)
+.+.|+.+|++|+=+.- -...+.++.....|.++.|.+..+...=-+
T Consensus 593 ~~~GLs~~~~Ly~n~~~--------------la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYANSRL--------------LASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEECCEE--------------EecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 68889999999983211 124678888899999999988878777554
No 46
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=49.85 E-value=19 Score=22.57 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=15.6
Q ss_pred CeEEEEcCCCcEEEeeCC
Q 013470 245 DRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 245 ~~s~~lt~~G~vy~wG~~ 262 (442)
.+.++++.+|.+|+.|..
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 467999999999999964
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.22 E-value=95 Score=30.87 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=40.0
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEE--EeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV--SDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~l--t~~ 144 (442)
..|.+++.....-++|++ +.+..+..|---+. ..+.+...-......|.+...|.+..++. .+|
T Consensus 396 ~~its~~iS~d~k~~Lvn---L~~qei~LWDl~e~-----------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVN---LQDQEIHLWDLEEN-----------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred CceeEEEEcCCCcEEEEE---cccCeeEEeecchh-----------hHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 366666665555555554 22677777763211 11111111111224567777777766666 589
Q ss_pred CCEEEeCC
Q 013470 145 GCLFTCGD 152 (442)
Q Consensus 145 g~vy~~G~ 152 (442)
++||.|-.
T Consensus 462 ~kvyIWhr 469 (519)
T KOG0293|consen 462 SKVYIWHR 469 (519)
T ss_pred ceEEEEEc
Confidence 99999964
No 48
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=43.72 E-value=57 Score=18.90 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.2
Q ss_pred ceEEEEeecCceEEEEEeCCCEEE
Q 013470 126 YTITHISAGWNHSGFVSDSGCLFT 149 (442)
Q Consensus 126 ~~i~~vs~G~~~s~~lt~~g~vy~ 149 (442)
..|+.|++|..+.++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 469999999999999999886654
No 49
>PHA02790 Kelch-like protein; Provisional
Probab=39.89 E-value=1.4e+02 Score=30.74 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=10.0
Q ss_pred EEEeCCCEEEeCC
Q 013470 140 FVSDSGCLFTCGD 152 (442)
Q Consensus 140 ~lt~~g~vy~~G~ 152 (442)
+..-+|+||+.|.
T Consensus 403 ~~~~~~~IYv~GG 415 (480)
T PHA02790 403 ALVFGRRLFLVGR 415 (480)
T ss_pred EEEECCEEEEECC
Confidence 4456789999994
No 50
>PRK05560 DNA gyrase subunit A; Validated
Probab=39.85 E-value=5.7e+02 Score=28.41 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=63.2
Q ss_pred eCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC-----CeEEEEcCCCcEEEe
Q 013470 185 CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG-----DRSAALSAEGHLYTW 259 (442)
Q Consensus 185 ~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~s~~lt~~G~vy~w 259 (442)
...++.+++|+ .|++|..-...--..++. ..-......+....+.+|+.+.+-. ...++++++|.+.-.
T Consensus 546 ~t~d~LllfTs---~Grv~~l~v~~iP~~~~~---~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 546 STHDTLLFFTN---RGRVYRLKVYEIPEASRT---ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred cCCCeEEEEec---CCeEEEEEhhhCcCCCcC---CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 34556888888 999998754322222111 1111121222223456787777654 357888999977655
Q ss_pred eCCCCCCC--CCCCccccCCCCCeeEEEe--CCCeEEEEECCCcEEEEeCCC
Q 013470 260 GRGFNSTS--DVNCPQSLPSSLSFSQAAL--GWNHVLVLTGDGEVLMLGGSH 307 (442)
Q Consensus 260 G~~~~~~~--~~~~p~~i~~~~~i~~i~~--G~~~~~~l~~~G~vy~~G~n~ 307 (442)
-...+... +-..-..+..+..+..+.. ...+.+++|+.|++|.+-...
T Consensus 620 ~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~e 671 (805)
T PRK05560 620 SLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESD 671 (805)
T ss_pred EhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhh
Confidence 33222110 0001111223445554443 345688999999999986544
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=39.57 E-value=3.3e+02 Score=26.93 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.2
Q ss_pred CCCeEEEEECCCcEEEEe
Q 013470 287 GWNHVLVLTGDGEVLMLG 304 (442)
Q Consensus 287 G~~~~~~l~~~G~vy~~G 304 (442)
...+.++.+++|+||++.
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 355788889999999874
No 52
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.05 E-value=4.3e+02 Score=30.60 Aligned_cols=66 Identities=6% Similarity=0.021 Sum_probs=35.9
Q ss_pred eEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCC
Q 013470 190 SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 190 ~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~ 262 (442)
-+-+|. |+++|.|-.++.+++-.-+.....+..-.++....+.-+..| .|.++|...-+|+..|-.
T Consensus 92 RaWiTi---Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 92 RAWITI---DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVS 157 (1311)
T ss_pred ceEEEe---CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEE
Confidence 355677 899999988776655332211221111111211122112222 478888888888888853
No 53
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.35 E-value=6.3e+02 Score=28.56 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=21.5
Q ss_pred ceEEEEeecCce--EEEEEeCCCEEEeC
Q 013470 126 YTITHISAGWNH--SGFVSDSGCLFTCG 151 (442)
Q Consensus 126 ~~i~~vs~G~~~--s~~lt~~g~vy~~G 151 (442)
..|.+|+....+ .++++.||+|+.|-
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 459999998888 79999999876664
No 54
>PLN02153 epithiospecifier protein
Probab=37.75 E-value=3.8e+02 Score=25.84 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=11.6
Q ss_pred ceEEEEEeCCCEEEeCCC
Q 013470 136 NHSGFVSDSGCLFTCGDG 153 (442)
Q Consensus 136 ~~s~~lt~~g~vy~~G~n 153 (442)
.|++++ -+++||++|--
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 455544 56789999853
No 55
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=36.88 E-value=3.8e+02 Score=25.50 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=74.2
Q ss_pred eCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC---ceEEEEEeCCCEEEe
Q 013470 74 CGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW---NHSGFVSDSGCLFTC 150 (442)
Q Consensus 74 ~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~---~~s~~lt~~g~vy~~ 150 (442)
-+.-|-++-.. ||.||.-++.. +.+|+-+... .+++.+..|. -|.+++..||..|++
T Consensus 61 G~ap~dvapap-----dG~VWft~qg~-gaiGhLdP~t--------------Gev~~ypLg~Ga~Phgiv~gpdg~~Wit 120 (353)
T COG4257 61 GSAPFDVAPAP-----DGAVWFTAQGT-GAIGHLDPAT--------------GEVETYPLGSGASPHGIVVGPDGSAWIT 120 (353)
T ss_pred CCCccccccCC-----CCceEEecCcc-ccceecCCCC--------------CceEEEecCCCCCCceEEECCCCCeeEe
Confidence 34556777777 99999866543 3455432111 2344444443 478888999999988
Q ss_pred CCCC-CcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCC-CCCCCCCCCCCceeecCeE
Q 013470 151 GDGT-FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK-RGQLGVSKDRIRSVSLPQV 228 (442)
Q Consensus 151 G~n~-~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~-~gqlg~~~~~~~~~~~p~~ 228 (442)
-... .+.++........-|.. .+-+-+.-.+.+++. .|.||-.|.+- +|+|-......+....|
T Consensus 121 d~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~---~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-- 186 (353)
T COG4257 121 DTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDP---WGNLWFTGQIGAYGRLDPARNVISVFPAP-- 186 (353)
T ss_pred cCcceeEEecCcccceEEeecc---------cccCCCcccceeeCC---CccEEEeeccccceecCcccCceeeeccC--
Confidence 5432 11221111111111111 222233445777788 89999888632 23331111111111111
Q ss_pred eeccCCCcEEEEEecCCeEEEEcCCCcEEEe
Q 013470 229 TIGLHDIEIVGISANGDRSAALSAEGHLYTW 259 (442)
Q Consensus 229 v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~w 259 (442)
.-+.-+.++.|-+|+||..
T Consensus 187 ------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 ------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ------------CCCCCcceEECCCCcEEEE
Confidence 1245688999999999986
No 56
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=36.25 E-value=3.5e+02 Score=26.21 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=34.4
Q ss_pred EEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC--CeEEEEECCCcEEEEeC
Q 013470 248 AALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW--NHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 248 ~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~--~~~~~l~~~G~vy~~G~ 305 (442)
++..+.|+||+|...........+-..--....|.|.+... ...++.++++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 34467899999976443332111111112456777777664 44455688899999853
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.40 E-value=4.7e+02 Score=25.84 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=53.1
Q ss_pred eEEEEeecCc-eE-EEEEeCCC-EEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC-ceEEEEeecCCCee
Q 013470 127 TITHISAGWN-HS-GFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR-HSLVLLKDCLGNQV 202 (442)
Q Consensus 127 ~i~~vs~G~~-~s-~~lt~~g~-vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~-h~~~lt~~~~~G~v 202 (442)
.+..|..|.. |. ++.+.||+ +|+.+. .|.+ ..+.......+..|..|.. +.++++. ||+.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~---DG~~ 91 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-----------SVIDLATGKVVATIKVGGNPRGIAVSP---DGKY 91 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-----------EEEETTSSSEEEEEE-SSEEEEEEE-----TTTE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-----------EEEECCcccEEEEEecCCCcceEEEcC---CCCE
Confidence 3556665543 44 44567776 777642 2221 2233333445777887766 6888888 7865
Q ss_pred eeeCCCCCCCCCCCC-CC---CceeecCeEeeccCCCcEEEEEecCC---eEEEEcCCCcEEEee
Q 013470 203 YGFGSGKRGQLGVSK-DR---IRSVSLPQVTIGLHDIEIVGISANGD---RSAALSAEGHLYTWG 260 (442)
Q Consensus 203 y~wG~n~~gqlg~~~-~~---~~~~~~p~~v~~~~~~~i~~i~~g~~---~s~~lt~~G~vy~wG 260 (442)
..-++...+++..-+ .. .+.+............++..|..... +.+.+.+.+++|.-.
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 443332222322211 00 11111111111112345666655333 667788889998874
No 58
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=33.98 E-value=5.9e+02 Score=26.86 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=19.8
Q ss_pred cEEEEEecCCe---EEEEcCCCcEEEeeCCC
Q 013470 236 EIVGISANGDR---SAALSAEGHLYTWGRGF 263 (442)
Q Consensus 236 ~i~~i~~g~~~---s~~lt~~G~vy~wG~~~ 263 (442)
.+.+++-+..+ .++.+.+|.|++|....
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 36777777665 34456799999997643
No 59
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=33.39 E-value=67 Score=18.38 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=14.1
Q ss_pred CeEEEEcCCCcEEEeeCC
Q 013470 245 DRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 245 ~~s~~lt~~G~vy~wG~~ 262 (442)
-+.++++.+|+||+...+
T Consensus 4 P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEEETTSEEEEEECC
T ss_pred CcEEEEeCCCCEEEEECC
Confidence 367888899999998654
No 60
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=33.00 E-value=1.1e+02 Score=29.59 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=38.5
Q ss_pred EEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeC
Q 013470 139 GFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFG 206 (442)
Q Consensus 139 ~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG 206 (442)
++..+.|+||+|-... ......++......+..|.+.+...+-++++.. |.++.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v-cdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV-CDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEE-eCCCcEEEEE
Confidence 4456789999996322 223355666666677789998887775444433 1289999884
No 61
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=30.56 E-value=5.3e+02 Score=25.33 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=12.2
Q ss_pred eEEEEEeCCCEEEeCCC
Q 013470 137 HSGFVSDSGCLFTCGDG 153 (442)
Q Consensus 137 ~s~~lt~~g~vy~~G~n 153 (442)
|+++...+++||++|-.
T Consensus 132 ~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 132 HVAVSLHNGKAYITGGV 148 (376)
T ss_pred eEEEEeeCCEEEEECCC
Confidence 55444468999999964
No 62
>PLN02193 nitrile-specifier protein
Probab=30.10 E-value=6.1e+02 Score=25.90 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=11.8
Q ss_pred CeEEEEcCCCcEEEeeCC
Q 013470 245 DRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 245 ~~s~~lt~~G~vy~wG~~ 262 (442)
.|++++. +++||++|-.
T Consensus 271 ~h~~~~~-~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAAD-EENVYVFGGV 287 (470)
T ss_pred ceEEEEE-CCEEEEECCC
Confidence 4565553 6789999864
No 63
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.01 E-value=5.8e+02 Score=25.59 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=37.9
Q ss_pred cEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEE-eCCCeEEEEECCCcEEEEeC
Q 013470 236 EIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAA-LGWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 236 ~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~-~G~~~~~~l~~~G~vy~~G~ 305 (442)
++.+++.+. .+..+++.+|.+|+.-...... .....+.......++. ||.. ++++.-...|+..|.
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~---~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg~ 286 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK---LCEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVGP 286 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccce---eEEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEECC
Confidence 677777764 3666678889999874432211 1111122233444554 6665 555555677888874
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=28.82 E-value=7.7e+02 Score=28.57 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=44.1
Q ss_pred cEEEEEeCCce-eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEE-eecCceEEEE-EeC
Q 013470 68 SVSMLACGGAH-VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHI-SAGWNHSGFV-SDS 144 (442)
Q Consensus 68 ~i~~I~~G~~h-~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~v-s~G~~~s~~l-t~~ 144 (442)
.+.+++....| ++|++-+. ||.|-+|-.-. -.|.+ ...+. ...-.+.+ .++..| .|+..+.+++ ++|
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k--~~~~~-~s~rS--~ltys~~~--sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRK--LEGEG-GSARS--ELTYSPEG--SRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred cccceeecCCCCceEEEecC---CceEEEeeehh--hhcCc-ceeee--eEEEeccC--CceEEEEeccCCCeEEEEcCC
Confidence 66688888888 88888755 99999997532 12221 11111 11111122 344444 2444444333 889
Q ss_pred CCEEEeCCCCC
Q 013470 145 GCLFTCGDGTF 155 (442)
Q Consensus 145 g~vy~~G~n~~ 155 (442)
|.|-..+-+.+
T Consensus 1120 G~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1120 GSVRVLRIDHY 1130 (1431)
T ss_pred CeEEEEEcccc
Confidence 99988876554
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=28.49 E-value=6.5e+02 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=29.6
Q ss_pred EEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCC
Q 013470 338 VIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTC 400 (442)
Q Consensus 338 I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~ 400 (442)
-.++.+..+-.+++.|+ .+|+||.|+++..-.+......
T Consensus 435 s~~v~fSpDG~~l~SGd------------------------sdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGD------------------------SDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred eeeEEEcCCCCeEEeec------------------------CCccEEEeechhhhhhhccccC
Confidence 34666777777788877 9999999999997777654433
No 66
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=28.36 E-value=86 Score=23.48 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=29.3
Q ss_pred CccccCCCCCeeEEEeC-CCeEEEEECCCcEEEEeCCCCcccC
Q 013470 271 CPQSLPSSLSFSQAALG-WNHVLVLTGDGEVLMLGGSHHGMLS 312 (442)
Q Consensus 271 ~p~~i~~~~~i~~i~~G-~~~~~~l~~~G~vy~~G~n~~gqlG 312 (442)
.|-.++....=..|+|. ....++|++||.+|+-+--+.|.+=
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 35555556666789999 8899999999999998865566553
No 67
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.63 E-value=1e+03 Score=27.73 Aligned_cols=205 Identities=16% Similarity=0.179 Sum_probs=100.9
Q ss_pred eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec-----CceEEEEEeCCCEEEeCCC
Q 013470 79 VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG-----WNHSGFVSDSGCLFTCGDG 153 (442)
Q Consensus 79 ~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G-----~~~s~~lt~~g~vy~~G~n 153 (442)
-+-+|- |+++|.|--++.+++-.-+..... =..|. .++..+| =.|.++|..--+|+..|-.
T Consensus 92 RaWiTi-----Dn~L~lWny~~~~e~~~~d~~sht-Il~V~--------LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 92 RAWITI-----DNNLFLWNYESDNELAEYDGLSHT-ILKVG--------LVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred ceEEEe-----CCeEEEEEcCCCCccccccchhhh-heeee--------eecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 456788 999999998876665433222110 01111 1111122 2577888877888888732
Q ss_pred CC-cccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEE-eecCCCeeeee----CCCCCCC----CCCCCCCCcee
Q 013470 154 TF-GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLL-KDCLGNQVYGF----GSGKRGQ----LGVSKDRIRSV 223 (442)
Q Consensus 154 ~~-gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt-~~~~~G~vy~w----G~n~~gq----lg~~~~~~~~~ 223 (442)
.. ...+....... ..+ ..++..+..|.+-.+-=++++ + +|.||-. +++-+++ .-.. ......
T Consensus 158 ~~~~~~~~~~f~~~---~~i-~~dg~~V~~I~~t~nGRIF~~G~---dg~lyEl~Yq~~~gWf~~rc~Kiclt-~s~ls~ 229 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTS---FKI-SVDGVSVNCITYTENGRIFFAGR---DGNLYELVYQAEDGWFGSRCRKICLT-KSVLSS 229 (1311)
T ss_pred eccccCcccccccc---eee-ecCCceEEEEEeccCCcEEEeec---CCCEEEEEEeccCchhhcccccccCc-hhHHHH
Confidence 21 11111111111 111 123345666665555445554 4 5665532 1111222 1111 111112
Q ss_pred ecCeEee--ccCCCcEEEEEecCCeEEE--EcCCCcEEEeeCCCCCCCC-----------------CCCccccCCCCCee
Q 013470 224 SLPQVTI--GLHDIEIVGISANGDRSAA--LSAEGHLYTWGRGFNSTSD-----------------VNCPQSLPSSLSFS 282 (442)
Q Consensus 224 ~~p~~v~--~~~~~~i~~i~~g~~~s~~--lt~~G~vy~wG~~~~~~~~-----------------~~~p~~i~~~~~i~ 282 (442)
..|..+. .....+|++|.-..+..+. +++.|.|-+|-.+..|.-. ...|..-+.-.+|+
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~Iv 309 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIV 309 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeE
Confidence 2333222 1235689999998876554 5677777777655444321 01111111233555
Q ss_pred EEE------eCCCeEEEEECCC-cEEEEeC
Q 013470 283 QAA------LGWNHVLVLTGDG-EVLMLGG 305 (442)
Q Consensus 283 ~i~------~G~~~~~~l~~~G-~vy~~G~ 305 (442)
+|. .-+-|.+|+|..| ++|.-|.
T Consensus 310 sI~~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 310 SISPLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred EecccCcccccceeEEEEecCCeEEEEecc
Confidence 554 3467899999999 7777654
No 68
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.18 E-value=5.2e+02 Score=24.09 Aligned_cols=164 Identities=10% Similarity=-0.037 Sum_probs=0.0
Q ss_pred EEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCC
Q 013470 130 HISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK 209 (442)
Q Consensus 130 ~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~ 209 (442)
.++-...+.++-..+|.+.+.-.++ .+.......-..|..-..-.+.+|-.++.-.+|.+.-.+ |.||+|-.+.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~s--l~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd----G~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKS--LDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD----GLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehh--hhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC----ceEEEeeehh
Q ss_pred CCC-CCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC
Q 013470 210 RGQ-LGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW 288 (442)
Q Consensus 210 ~gq-lg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~ 288 (442)
.-. ++.........+.-.-....+.....-+.-..+..+.---|+.+|+|.... +...-+.--...-|..+..-+
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~----G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED----GRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC----CEEEEEEcCCcceeeeeeecc
Q ss_pred CeEEEEE--CCCcEEEE
Q 013470 289 NHVLVLT--GDGEVLML 303 (442)
Q Consensus 289 ~~~~~l~--~~G~vy~~ 303 (442)
...-+|+ +||.+-.|
T Consensus 167 ~~~qilsG~EDGtvRvW 183 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVW 183 (325)
T ss_pred cCcceeecCCCccEEEE
No 69
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=27.13 E-value=3.3e+02 Score=25.00 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=48.4
Q ss_pred eEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeee
Q 013470 282 SQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLF 361 (442)
Q Consensus 282 ~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~ 361 (442)
..|.-+..-.++.+.+|.||+|-+|.+|++-. .+....+.-...|..|..-.+.+++-
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---------------~~~s~~e~i~~~Ip~~~~~~~~c~~~------- 121 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---------------RVCSGEESIDLGIPNGRDSSLGCVGA------- 121 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccchHHH---------------hhhcccccceeccccccccceeEEec-------
Confidence 34445556667788999999999998877643 11111222345566777755555532
Q ss_pred EeccCCCCCccceeeeccCCcEEEEECCCCCcccC
Q 013470 362 IISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGL 396 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~ 396 (442)
.+|.++.|---.+-.||.
T Consensus 122 -----------------~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 122 -----------------QDGRIRACNIKPNKVLGY 139 (238)
T ss_pred -----------------cCCceeeeccccCceeee
Confidence 888999987666555553
No 70
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=25.80 E-value=66 Score=20.90 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=11.0
Q ss_pred ceEEEEEeCCCEEEeCC
Q 013470 136 NHSGFVSDSGCLFTCGD 152 (442)
Q Consensus 136 ~~s~~lt~~g~vy~~G~ 152 (442)
.|+++...+++||++|-
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 57777777789999983
No 71
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=25.44 E-value=1e+03 Score=27.01 Aligned_cols=167 Identities=9% Similarity=-0.006 Sum_probs=85.8
Q ss_pred cCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe--CCCceEEEEeecCCCeeeeeCCCCCC
Q 013470 134 GWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSGKRG 211 (442)
Q Consensus 134 G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~--G~~h~~~lt~~~~~G~vy~wG~n~~g 211 (442)
-....+.|+.+|-+-..-...+..-+.+ +..+..-.++.+..+.. ..++.+++|+ .|++|..-...--
T Consensus 515 ~E~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn---~Gkvy~ikvy~IP 584 (957)
T PRK13979 515 VEDVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTD---KGNMYQIKGINIP 584 (957)
T ss_pred CcceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEEC---CCeEEEEEeeeCC
Confidence 3455677888886654433333211111 11111112344555443 4456888899 9999976332211
Q ss_pred CCCCCCCCCceeecCeEeec--cCCCcEEEEEecCC-----eEEEEcCCCcEEEeeCCCCCCCC-CCCccccCCCCCeeE
Q 013470 212 QLGVSKDRIRSVSLPQVTIG--LHDIEIVGISANGD-----RSAALSAEGHLYTWGRGFNSTSD-VNCPQSLPSSLSFSQ 283 (442)
Q Consensus 212 qlg~~~~~~~~~~~p~~v~~--~~~~~i~~i~~g~~-----~s~~lt~~G~vy~wG~~~~~~~~-~~~p~~i~~~~~i~~ 283 (442)
... ....-.+....+.. ..+.+|+.+.+-.. +.+++|++|.+.-.-...+.... ...-..+..+..+..
T Consensus 585 e~~---~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~DeLV~ 661 (957)
T PRK13979 585 EFK---WKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKGEKLIK 661 (957)
T ss_pred CCC---cCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCCCEEEE
Confidence 111 11111222222211 13567877776532 46888999998877543322111 111222334556665
Q ss_pred EEeCC-----CeEEEEECCCcEEEEeCCCCcccCC
Q 013470 284 AALGW-----NHVLVLTGDGEVLMLGGSHHGMLSD 313 (442)
Q Consensus 284 i~~G~-----~~~~~l~~~G~vy~~G~n~~gqlG~ 313 (442)
+.... .+.++++++|.+.-+-.+.--.+|.
T Consensus 662 v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 662 VKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred EEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 54432 3588899999888876665544444
No 72
>PRK05560 DNA gyrase subunit A; Validated
Probab=25.17 E-value=9.7e+02 Score=26.60 Aligned_cols=221 Identities=12% Similarity=0.057 Sum_probs=107.3
Q ss_pred CCCcEEEEEe--CCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC-----ce
Q 013470 65 SLSSVSMLAC--GGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW-----NH 137 (442)
Q Consensus 65 ~~~~i~~I~~--G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~-----~~ 137 (442)
+...+..+.. ...+.+++|+ .|++|..-...--..+... .-...-..+.+.++ .+|+.+.+-. ..
T Consensus 535 e~D~l~~~~~~~t~d~LllfTs-----~Grv~~l~v~~iP~~~~~~-~G~~i~~ll~L~~~--E~Iv~~i~~~~~~~e~~ 606 (805)
T PRK05560 535 EDDFVEHLFVASTHDTLLFFTN-----RGRVYRLKVYEIPEASRTA-RGRPIVNLLPLEPG--EKITAILPVREFDDDKY 606 (805)
T ss_pred CCCeeEEEEEecCCCeEEEEec-----CCeEEEEEhhhCcCCCcCC-CCeEHHHhcCCCCC--ceEEEEEeccCCCCCCE
Confidence 4445555443 3445778888 9999998654221111100 01111112333344 5677776644 35
Q ss_pred EEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe--CCCceEEEEeecCCCeeeeeCCCCCCCCCC
Q 013470 138 SGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215 (442)
Q Consensus 138 s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~--G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~ 215 (442)
.+++|.+|.+--.-.+.+-....+ -...+..-.+..++.+.. ..++.+++|+ .|++|.+-...--..++
T Consensus 607 lvlvTk~GyiKRi~l~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~---~Gr~~r~~~~eIp~~gr 677 (805)
T PRK05560 607 LFFATKNGTVKKTSLSEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATK---NGKAIRFPESDVRPMGR 677 (805)
T ss_pred EEEEeCCCEEEEEEhHHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEEC---CCcEEEEEhhhcCccCc
Confidence 678899997664432222110000 001111113345554443 3456889999 99999875443322332
Q ss_pred CCCCCceeecCeEeeccCCCcEEEEEecC---CeEEEEcCCCcEEEeeCCCCCC-----CCCCCccccCCCCCeeEEE--
Q 013470 216 SKDRIRSVSLPQVTIGLHDIEIVGISANG---DRSAALSAEGHLYTWGRGFNST-----SDVNCPQSLPSSLSFSQAA-- 285 (442)
Q Consensus 216 ~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G~vy~wG~~~~~~-----~~~~~p~~i~~~~~i~~i~-- 285 (442)
....... +....+.+|+.+.+.. .+.+++|+.|.+.-.-...+.. .+......-.....+..+.
T Consensus 678 ~~~Gv~~------i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v 751 (805)
T PRK05560 678 TARGVRG------IKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPV 751 (805)
T ss_pred ccCCccc------ccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEe
Confidence 2111110 1112344666665543 2577788888766553322111 1111111111123444432
Q ss_pred eCCCeEEEEECCCcEEEEeCCCC
Q 013470 286 LGWNHVLVLTGDGEVLMLGGSHH 308 (442)
Q Consensus 286 ~G~~~~~~l~~~G~vy~~G~n~~ 308 (442)
.+....++++.+|++.-+-.+..
T Consensus 752 ~~~~~v~i~T~~G~~lrf~~~eI 774 (805)
T PRK05560 752 DDDDEIMLITDSGKLIRTRVSEI 774 (805)
T ss_pred cCCCeEEEEecCCeEEEEEHHHC
Confidence 34456788888898888765543
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=24.61 E-value=2.9e+02 Score=27.41 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=43.9
Q ss_pred ceEEEEeCCCc---eEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCc
Q 013470 179 NVHQIACGMRH---SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGH 255 (442)
Q Consensus 179 ~I~~I~~G~~h---~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~ 255 (442)
.++.+.++.++ .+++.. +|++..|-.+..-. ++ .....+.+|.--....+|++..|+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~---~g~l~~w~~~~Wt~----------------l~-~~~~~~~DIi~~kGkfYAvD~~G~ 220 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGR---DGKINYWDGNVLKA----------------LK-QMGYHFSDIIVHKGQTYALDSIGI 220 (373)
T ss_pred EEEEeecCCCcceEEEEEee---cCcEeeecCCeeeE----------------cc-CCCceeeEEEEECCEEEEEcCCCe
Confidence 45557888876 667777 89998895322211 11 234568888888888999999999
Q ss_pred EEEee
Q 013470 256 LYTWG 260 (442)
Q Consensus 256 vy~wG 260 (442)
||++.
T Consensus 221 l~~i~ 225 (373)
T PLN03215 221 VYWIN 225 (373)
T ss_pred EEEEe
Confidence 99986
No 74
>PLN02193 nitrile-specifier protein
Probab=24.29 E-value=7.7e+02 Score=25.15 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=12.2
Q ss_pred CceEEEEeecCCCeeeeeCCC
Q 013470 188 RHSLVLLKDCLGNQVYGFGSG 208 (442)
Q Consensus 188 ~h~~~lt~~~~~G~vy~wG~n 208 (442)
.|++++. +++||.+|-.
T Consensus 271 ~h~~~~~----~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAAD----EENVYVFGGV 287 (470)
T ss_pred ceEEEEE----CCEEEEECCC
Confidence 4666654 5899999854
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=24.26 E-value=6.7e+02 Score=24.38 Aligned_cols=59 Identities=19% Similarity=0.085 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeC
Q 013470 244 GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 244 ~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~ 305 (442)
..+.++.+.+|.||++-......+-.. + .+. ............+.++.+.+|.||++-.
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~-~-~~~-~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKN-D-ELK-YRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEcc-c-ccc-CCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 445566677788888754211110000 0 010 0011111123457777788899999853
No 76
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=23.29 E-value=6.5e+02 Score=23.93 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred CceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCc----ceEEEEeecCceEEEEEeCCCEEEeC
Q 013470 76 GAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHR----YTITHISAGWNHSGFVSDSGCLFTCG 151 (442)
Q Consensus 76 ~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~----~~i~~vs~G~~~s~~lt~~g~vy~~G 151 (442)
..+..+..- +++||+.| |.........-..+......- ..+-.+-.......+..-+++||++|
T Consensus 63 r~~~~~~~~-----~~~lyviG-------G~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~G 130 (323)
T TIGR03548 63 AAYGASVSV-----ENGIYYIG-------GSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGG 130 (323)
T ss_pred ccceEEEEE-----CCEEEEEc-------CCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEe
Q ss_pred CCCCcccCCCCCCCcccceEEeecCCCceEEEE----eCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCe
Q 013470 152 DGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIA----CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQ 227 (442)
Q Consensus 152 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~----~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~ 227 (442)
-...+.. ..-...-.+.......+. ....+..+..- +++||.+|- .........
T Consensus 131 G~~~~~~--------~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~---~~~iYv~GG-----------~~~~~~~~~ 188 (323)
T TIGR03548 131 GNRNGKP--------SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL---QNELYVFGG-----------GSNIAYTDG 188 (323)
T ss_pred CcCCCcc--------CceEEEEcCCCCCeeECCCCCCCCCCcceEEEE---CCEEEEEcC-----------CCCccccce
Q ss_pred EeeccCCCcEEEEEec---------CCeEEEEcCCCcEEEee
Q 013470 228 VTIGLHDIEIVGISAN---------GDRSAALSAEGHLYTWG 260 (442)
Q Consensus 228 ~v~~~~~~~i~~i~~g---------~~~s~~lt~~G~vy~wG 260 (442)
...+........+..- ..++.+...++++|+.|
T Consensus 189 ~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G 230 (323)
T TIGR03548 189 YKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG 230 (323)
T ss_pred EEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.11 E-value=5.1e+02 Score=22.65 Aligned_cols=251 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred ccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCc--eeEEEeCCCcccCCeEEEEeCCCCCCCCCCC
Q 013470 31 QQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGA--HVLALTSPSSVIGGKVFSWGRGSSGQLGHGE 108 (442)
Q Consensus 31 ~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~ 108 (442)
..++.|+.|=..... +..........+..+..-.. ..++... ++.++.|-....
T Consensus 28 ~~~g~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~------- 83 (289)
T cd00200 28 SGDGTIKVWDLETGE------------LLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIRLWDLETG------- 83 (289)
T ss_pred ecCcEEEEEEeeCCC------------cEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEEEEEcCcc-------
Q ss_pred CcCeecceEeeecCCCcceEEEEeecCc-eEEEEEe-CCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeC
Q 013470 109 MVDALYPKPVTFFDGHRYTITHISAGWN-HSGFVSD-SGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG 186 (442)
Q Consensus 109 ~~~~~~p~~i~~~~~~~~~i~~vs~G~~-~s~~lt~-~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G 186 (442)
..+..+......+..+..... ..++... +|.|+.|-.. ...+..........|..+...
T Consensus 84 -------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 84 -------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE------------TGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred -------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC------------CcEEEEEeccCCCcEEEEEEc
Q ss_pred C--CceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCC
Q 013470 187 M--RHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRG 262 (442)
Q Consensus 187 ~--~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~ 262 (442)
. ...+.... +|.|+.| ......+..........+..+..... ..++...+|.|++|-..
T Consensus 145 ~~~~~l~~~~~---~~~i~i~--------------d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 145 PDGTFVASSSQ---DGTIKLW--------------DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred CcCCEEEEEcC---CCcEEEE--------------EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC
Q ss_pred CCCCCCCCCccccCCCCCeeEEEeCC-CeEEEEEC-CCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEE
Q 013470 263 FNSTSDVNCPQSLPSSLSFSQAALGW-NHVLVLTG-DGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQ 340 (442)
Q Consensus 263 ~~~~~~~~~p~~i~~~~~i~~i~~G~-~~~~~l~~-~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 340 (442)
......... .....+..+.... ...++... +|+++.|-... ..+..........|..
T Consensus 208 ~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~-----------------~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 208 TGKCLGTLR----GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-----------------GECVQTLSGHTNSVTS 266 (289)
T ss_pred CCceecchh----hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-----------------ceeEEEccccCCcEEE
Q ss_pred EeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEE
Q 013470 341 IAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTW 386 (442)
Q Consensus 341 I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~w 386 (442)
++.......++++. .++.+..|
T Consensus 267 ~~~~~~~~~l~~~~------------------------~d~~i~iw 288 (289)
T cd00200 267 LAWSPDGKRLASGS------------------------ADGTIRIW 288 (289)
T ss_pred EEECCCCCEEEEec------------------------CCCeEEec
No 78
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=22.98 E-value=1e+03 Score=25.98 Aligned_cols=70 Identities=13% Similarity=0.268 Sum_probs=44.1
Q ss_pred ceEEEEeecCceEEEEEeCCC-EEEeCCCCCcccCCCCCCCcccceEEe-------ecCCCceEEEEeCCC----ceEEE
Q 013470 126 YTITHISAGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVS-------SFVNKNVHQIACGMR----HSLVL 193 (442)
Q Consensus 126 ~~i~~vs~G~~~s~~lt~~g~-vy~~G~n~~gqlG~~~~~~~~~p~~v~-------~~~~~~I~~I~~G~~----h~~~l 193 (442)
.+|..|+.....++++|.-++ |-.| +-|.+. ....|.++. .+....+..|+||.. .+++|
T Consensus 166 s~Vsav~fsEdgSYfvT~gnrHvk~w----yl~~~~----KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfai 237 (1080)
T KOG1408|consen 166 SVVSAVAFSEDGSYFVTSGNRHVKLW----YLQIQS----KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAI 237 (1080)
T ss_pred eeEEEEEEccCCceeeeeeeeeEEEE----Eeeccc----cccCCccccchhhhccccccchhhhhhhcCcccccceEEE
Confidence 457777777777777876554 4333 112221 223333332 223356899999987 99999
Q ss_pred EeecCCCeeeeeC
Q 013470 194 LKDCLGNQVYGFG 206 (442)
Q Consensus 194 t~~~~~G~vy~wG 206 (442)
+. .|.+.-|-
T Consensus 238 t~---qGhLvEFS 247 (1080)
T KOG1408|consen 238 TA---QGHLVEFS 247 (1080)
T ss_pred ec---ccceeeec
Confidence 99 89998764
No 79
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.63 E-value=6.2e+02 Score=23.46 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCC-cEEEE
Q 013470 244 GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDG-EVLML 303 (442)
Q Consensus 244 ~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G-~vy~~ 303 (442)
..|.+-=.+||.||.|..-...+.. ...++....+.++++-...-.+++..| ..+.|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~s---k~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQIS---KLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeee---eeccCCceeEEeeecccCccceeEecCCceece
Confidence 4466666899999999875544421 122234445677777665544444433 45555
No 80
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=22.11 E-value=3.8e+02 Score=21.52 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=0.0
Q ss_pred cEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEE
Q 013470 236 EIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLM 302 (442)
Q Consensus 236 ~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~ 302 (442)
..+++.|-..+.+.+..+|.|-.-+.. ...........+.. ..|.=-..-....+++.+.|+||+
T Consensus 1 R~~~Ly~~~~~~L~i~~~g~V~gt~~~-~~~~s~~~i~~~~~-g~V~i~~~~s~~YLcmn~~G~ly~ 65 (122)
T PF00167_consen 1 RHVQLYCRTGYFLQINPNGTVDGTGDD-NSPYSVFEIHSVGF-GVVRIRGVKSCRYLCMNKCGRLYG 65 (122)
T ss_dssp EEEEEEETTSEEEEEETTSBEEEESST-TSTTGEEEEEEEET-TEEEEEETTTTEEEEEBTTSBEEE
T ss_pred CCEEEEECCCeEEEECCCCeEeCCCCc-CcceeEEEEEeccc-eEEEEEEecceEEEEECCCCeEcc
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.00 E-value=8.2e+02 Score=24.61 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=41.9
Q ss_pred CCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccC--CCcEEEEEecCCeEEEE--cC
Q 013470 177 NKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH--DIEIVGISANGDRSAAL--SA 252 (442)
Q Consensus 177 ~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~--~~~i~~i~~g~~~s~~l--t~ 252 (442)
..+|++++-..+.=++|.+ -++.++..|-..+. ..+++....+ ..-|...+.|.+-.++. .+
T Consensus 395 ~~~its~~iS~d~k~~Lvn-L~~qei~LWDl~e~-------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVN-LQDQEIHLWDLEEN-------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred cCceeEEEEcCCCcEEEEE-cccCeeEEeecchh-------------hHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 3578888877665444443 22678888854221 1222222211 12466777777755555 58
Q ss_pred CCcEEEeeCC
Q 013470 253 EGHLYTWGRG 262 (442)
Q Consensus 253 ~G~vy~wG~~ 262 (442)
|++||+|-+-
T Consensus 461 D~kvyIWhr~ 470 (519)
T KOG0293|consen 461 DSKVYIWHRI 470 (519)
T ss_pred CceEEEEEcc
Confidence 9999999653
No 82
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.25 E-value=1.1e+03 Score=26.02 Aligned_cols=220 Identities=10% Similarity=0.011 Sum_probs=104.9
Q ss_pred CCCCcEEEEE--eCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec-----Cc
Q 013470 64 SSLSSVSMLA--CGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG-----WN 136 (442)
Q Consensus 64 ~~~~~i~~I~--~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G-----~~ 136 (442)
.+...+..+. ....+.+++|+ +|++|..-...--..+... .-......+.+.++ .+|+.+.+- ..
T Consensus 532 Ke~D~l~~~~~~~t~d~LllfTs-----~Grv~~l~~~~IP~~~r~~-~G~~i~~ll~L~~~--E~Iv~~i~~~~~~~~~ 603 (800)
T TIGR01063 532 KDDDFIEQLLVASTHDYLLFFTN-----RGKVYWLKVYQIPEASRTA-KGKPIVNLLPLQPD--ERITAILSVKEFDDGL 603 (800)
T ss_pred CCCCeeEEEEEecCCCeEEEEeC-----CCcEEEEEhhhCcCCCcCC-CCcCHHHhccCCCC--CeEEEEEEeccCCCCC
Confidence 3444565543 33445778888 9999998432211111110 00111112333344 567666652 23
Q ss_pred eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccce-EEeecCCCceEEEEe--CCCceEEEEeecCCCeeeeeCCCCCCCC
Q 013470 137 HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPV-KVSSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSGKRGQL 213 (442)
Q Consensus 137 ~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~-~v~~~~~~~I~~I~~--G~~h~~~lt~~~~~G~vy~wG~n~~gql 213 (442)
+.+++|.+|.+--.-.+.+-.... ... .+..-.++.++.+.. ..++.+++|+ +|++|.+-.......
T Consensus 604 ~lvliT~~GyiKRi~l~~~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts---~Gr~~r~~v~eIp~~ 673 (800)
T TIGR01063 604 YLFFATKNGVVKKTSLTEFSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSK---NGKAVRFPEEDVRPM 673 (800)
T ss_pred EEEEEeCCCEEEEEEhHHhhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEEC---CCcEEEEEhhhcCCc
Confidence 567788988776543322211000 000 011112344554433 3456888899 999998855444333
Q ss_pred CCCCCCCceeecCeEeeccCCCcEEEEEec--CCeEEEEcCCCcEEEeeCCCCCC-----CCCCCccccCCCCCeeEEE-
Q 013470 214 GVSKDRIRSVSLPQVTIGLHDIEIVGISAN--GDRSAALSAEGHLYTWGRGFNST-----SDVNCPQSLPSSLSFSQAA- 285 (442)
Q Consensus 214 g~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~~-----~~~~~p~~i~~~~~i~~i~- 285 (442)
++...... .+....+.+|+.+..- ..+.+++|++|.+.-.-...... .+......-.....+..+.
T Consensus 674 gr~~~Gv~------~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~ 747 (800)
T TIGR01063 674 GRAARGVR------GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIA 747 (800)
T ss_pred CCCCCCee------cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEE
Confidence 33211111 0111234566666543 23567788888766654322111 1111111011123343332
Q ss_pred -eCCCeEEEEECCCcEEEEeCCC
Q 013470 286 -LGWNHVLVLTGDGEVLMLGGSH 307 (442)
Q Consensus 286 -~G~~~~~~l~~~G~vy~~G~n~ 307 (442)
-.....++++.+|++..+-.+.
T Consensus 748 v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 748 VDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred ecCCCeEEEEecCCeEEEeeHhh
Confidence 2344577888888887776543
No 83
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=21.08 E-value=7.4e+02 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.5
Q ss_pred EEEECCCcEEEEeC
Q 013470 292 LVLTGDGEVLMLGG 305 (442)
Q Consensus 292 ~~l~~~G~vy~~G~ 305 (442)
.+..-+++||.+|-
T Consensus 316 ~~~~~~~~iyv~GG 329 (346)
T TIGR03547 316 VSVSWNNGVLLIGG 329 (346)
T ss_pred EEEEcCCEEEEEec
Confidence 34556899999984
No 84
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=20.18 E-value=1e+02 Score=18.57 Aligned_cols=16 Identities=25% Similarity=0.700 Sum_probs=12.2
Q ss_pred ccEEEEecCCCCCCCC
Q 013470 33 VVKVWSWGAGTDGQLG 48 (442)
Q Consensus 33 ~~~v~~~G~n~~gqLG 48 (442)
+-.+-+||+|..|.+.
T Consensus 17 SlslVVWGRnG~g~~~ 32 (33)
T PRK02529 17 SIAMVVWGRNGDGSID 32 (33)
T ss_pred eeEEEEEecCCccccC
Confidence 3458899999888654
No 85
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=20.15 E-value=3.6e+02 Score=26.76 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=44.3
Q ss_pred EEEEEecCCe---EEEEcCCCcEEEeeCCCCCCCCCCCcccc-CCCCCeeEEEeCCCeEEEEECCCcEEEEe
Q 013470 237 IVGISANGDR---SAALSAEGHLYTWGRGFNSTSDVNCPQSL-PSSLSFSQAALGWNHVLVLTGDGEVLMLG 304 (442)
Q Consensus 237 i~~i~~g~~~---s~~lt~~G~vy~wG~~~~~~~~~~~p~~i-~~~~~i~~i~~G~~~~~~l~~~G~vy~~G 304 (442)
++.+.++..+ .+++..+|++..|..+. .+.+ .....+.+|..-.....|++..|++|.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------Wt~l~~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------LKALKQMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCe--------eeEccCCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 4456667765 77778899999996322 2222 24567899998888899999899999986
Done!