Query 013470
Match_columns 442
No_of_seqs 209 out of 2144
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 5.8E-70 2E-74 542.5 32.3 364 29-437 15-388 (389)
2 3mvd_K Regulator of chromosome 100.0 9E-66 3.1E-70 518.3 41.0 362 30-441 39-423 (423)
3 4d9s_A UVB-resistance protein 100.0 1.1E-65 3.6E-70 514.5 39.2 362 4-412 9-379 (406)
4 1a12_A RCC1, regulator of chro 100.0 1.7E-65 5.8E-70 514.5 38.3 358 30-437 23-410 (413)
5 3of7_A Regulator of chromosome 100.0 7.2E-65 2.5E-69 518.1 37.4 379 15-436 10-450 (473)
6 4d9s_A UVB-resistance protein 100.0 1.5E-61 5E-66 484.5 39.8 325 66-437 15-348 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.5E-57 8.6E-62 451.5 28.7 320 70-436 4-335 (389)
8 1a12_A RCC1, regulator of chro 100.0 1.6E-56 5.4E-61 449.4 32.8 312 71-436 12-355 (413)
9 3of7_A Regulator of chromosome 100.0 4.9E-56 1.7E-60 452.9 30.2 331 67-437 10-396 (473)
10 3mvd_K Regulator of chromosome 100.0 1.5E-55 5E-60 443.8 32.0 317 66-437 23-365 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 7.7E-51 2.6E-55 386.2 29.7 275 34-440 2-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.2E-45 7.5E-50 348.7 25.7 246 12-352 25-270 (282)
13 1p22_A F-BOX/WD-repeat protein 96.8 0.46 1.6E-05 46.2 28.2 191 66-305 173-363 (435)
14 4gbf_A Phikz131; 7-bladed beta 96.4 0.0082 2.8E-07 53.4 7.4 72 279-394 309-380 (400)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.2 1.1 3.6E-05 43.6 28.5 111 178-306 280-390 (445)
16 3jrp_A Fusion protein of prote 96.1 0.91 3.1E-05 42.4 25.9 198 67-306 12-239 (379)
17 3mmy_A MRNA export factor; mRN 96.0 0.97 3.3E-05 41.9 23.8 194 66-306 39-246 (368)
18 1k3i_A Galactose oxidase precu 95.7 0.66 2.3E-05 48.2 19.8 22 288-309 457-478 (656)
19 1p22_A F-BOX/WD-repeat protein 95.6 1.8 6.2E-05 41.8 29.8 191 67-306 134-324 (435)
20 3k26_A Polycomb protein EED; W 95.3 1.9 6.4E-05 39.9 21.7 164 67-263 70-260 (366)
21 3jro_A Fusion protein of prote 95.2 2 7E-05 45.2 21.6 197 68-306 11-237 (753)
22 2zwa_A Leucine carboxyl methyl 94.9 3 0.0001 43.6 21.6 148 135-305 441-615 (695)
23 4gbf_A Phikz131; 7-bladed beta 94.5 0.051 1.8E-06 48.4 5.6 70 178-265 309-378 (400)
24 4aez_A CDC20, WD repeat-contai 94.3 3.8 0.00013 39.0 27.4 189 65-305 133-334 (401)
25 3i2n_A WD repeat-containing pr 94.3 3.2 0.00011 38.2 22.2 196 66-306 65-290 (357)
26 2ovr_B FBW7, F-BOX/WD repeat p 93.9 4.9 0.00017 38.8 33.9 187 67-305 160-346 (445)
27 1gxr_A ESG1, transducin-like e 93.3 4.7 0.00016 36.6 27.3 189 66-306 97-295 (337)
28 3k26_A Polycomb protein EED; W 93.1 5.2 0.00018 36.8 20.4 220 66-305 115-364 (366)
29 2zwa_A Leucine carboxyl methyl 93.1 8.4 0.00029 40.2 20.8 18 289-306 657-674 (695)
30 1gxr_A ESG1, transducin-like e 92.9 5.2 0.00018 36.2 26.5 227 32-306 19-254 (337)
31 3jrp_A Fusion protein of prote 91.5 8.4 0.00029 35.5 22.6 150 126-305 12-189 (379)
32 3odt_A Protein DOA1; ubiquitin 90.8 8.6 0.00029 34.3 25.4 187 66-306 104-295 (313)
33 4aez_A CDC20, WD repeat-contai 90.4 12 0.00042 35.3 25.3 185 71-305 98-291 (401)
34 3jro_A Fusion protein of prote 90.1 19 0.00065 37.7 19.7 151 126-305 10-187 (753)
35 4gqb_B Methylosome protein 50; 89.8 13 0.00044 34.7 26.5 191 67-304 83-286 (344)
36 3i2n_A WD repeat-containing pr 89.7 12 0.0004 34.2 20.7 155 126-306 19-198 (357)
37 3mmy_A MRNA export factor; mRN 89.0 13 0.00046 33.8 20.3 159 115-306 29-198 (368)
38 2aq5_A Coronin-1A; WD40 repeat 88.9 16 0.00054 34.5 23.6 115 67-207 82-205 (402)
39 1got_B GT-beta; complex (GTP-b 86.2 20 0.0007 32.9 20.1 111 178-305 185-299 (340)
40 1yfq_A Cell cycle arrest prote 86.0 20 0.00067 32.5 25.5 203 67-307 12-225 (342)
41 3odt_A Protein DOA1; ubiquitin 85.6 19 0.00065 32.0 26.0 144 126-305 105-253 (313)
42 1pgu_A Actin interacting prote 84.9 33 0.0011 34.0 26.5 68 236-306 448-518 (615)
43 1sq9_A Antiviral protein SKI8; 82.8 30 0.001 32.1 21.0 169 120-306 11-215 (397)
44 4g56_B MGC81050 protein; prote 82.2 32 0.0011 31.9 26.8 146 126-304 140-298 (357)
45 1zgk_A Kelch-like ECH-associat 80.7 33 0.0011 31.1 16.3 17 288-305 207-223 (308)
46 2aq5_A Coronin-1A; WD40 repeat 80.3 39 0.0013 31.7 24.6 159 72-262 40-206 (402)
47 3ii7_A Kelch-like protein 7; p 80.2 33 0.0011 30.9 16.6 17 288-305 239-255 (306)
48 1sq9_A Antiviral protein SKI8; 79.1 40 0.0014 31.1 23.7 205 66-306 16-266 (397)
49 1yfq_A Cell cycle arrest prote 78.9 37 0.0012 30.6 22.0 204 66-305 56-280 (342)
50 1xip_A Nucleoporin NUP159; bet 78.7 15 0.0005 35.3 11.0 98 180-303 90-187 (388)
51 4gga_A P55CDC, cell division c 78.5 46 0.0016 31.5 26.2 66 67-151 148-215 (420)
52 2vpj_A Kelch-like protein 12; 77.7 39 0.0013 30.2 18.6 17 289-306 199-215 (301)
53 4g56_B MGC81050 protein; prote 77.5 45 0.0015 30.9 25.3 189 67-307 140-343 (357)
54 1r5m_A SIR4-interacting protei 77.2 46 0.0016 30.8 26.0 66 236-305 249-317 (425)
55 1pgu_A Actin interacting prote 76.3 62 0.0021 31.9 22.3 153 126-306 161-327 (615)
56 1r5m_A SIR4-interacting protei 75.7 50 0.0017 30.5 22.9 137 137-306 219-360 (425)
57 2pm9_A Protein WEB1, protein t 73.8 57 0.0019 30.2 17.9 153 127-308 167-338 (416)
58 2pm9_A Protein WEB1, protein t 72.0 63 0.0021 29.9 20.3 201 66-305 67-292 (416)
59 1k8k_C P40, ARP2/3 complex 41 71.9 58 0.002 29.5 22.6 154 127-305 10-171 (372)
60 1xip_A Nucleoporin NUP159; bet 71.6 42 0.0014 32.1 12.2 133 128-294 90-229 (388)
61 1vyh_C Platelet-activating fac 70.8 72 0.0024 30.1 22.9 150 67-262 109-264 (410)
62 3ii7_A Kelch-like protein 7; p 70.4 60 0.0021 29.1 18.2 17 288-305 192-208 (306)
63 3zwl_B Eukaryotic translation 70.2 62 0.0021 29.1 21.7 151 126-306 33-205 (369)
64 2vpj_A Kelch-like protein 12; 70.0 60 0.0021 28.9 18.1 17 288-305 245-261 (301)
65 4gqb_B Methylosome protein 50; 68.9 72 0.0025 29.4 24.9 186 67-305 128-329 (344)
66 4a11_B DNA excision repair pro 67.1 77 0.0026 29.0 23.7 153 126-306 44-217 (408)
67 3v7d_B Cell division control p 65.9 92 0.0031 29.5 32.8 201 66-306 162-380 (464)
68 3no0_A DNA gyrase subunit A; D 65.6 77 0.0026 28.5 19.1 215 66-313 23-252 (276)
69 3ei3_B DNA damage-binding prot 65.5 83 0.0028 28.9 25.9 192 67-306 74-281 (383)
70 3zwl_B Eukaryotic translation 64.9 79 0.0027 28.4 25.5 160 67-262 75-248 (369)
71 3no0_A DNA gyrase subunit A; D 62.0 90 0.0031 28.1 17.2 141 137-312 3-151 (276)
72 3dwl_C Actin-related protein 2 61.0 99 0.0034 28.2 19.4 113 178-306 56-176 (377)
73 4a11_B DNA excision repair pro 60.1 1E+02 0.0035 28.1 33.5 202 65-307 42-276 (408)
74 3vl1_A 26S proteasome regulato 59.8 1.1E+02 0.0037 28.3 27.6 56 246-306 261-321 (420)
75 4asc_A Kelch repeat and BTB do 58.3 1E+02 0.0036 27.6 15.9 18 187-208 140-157 (315)
76 3gre_A Serine/threonine-protei 57.6 1.2E+02 0.0042 28.3 20.0 59 135-207 182-243 (437)
77 1k8k_C P40, ARP2/3 complex 41 57.0 1.1E+02 0.0038 27.5 27.8 199 67-305 9-231 (372)
78 3f3f_A Nucleoporin SEH1; struc 56.8 1E+02 0.0035 27.1 25.9 121 67-208 12-142 (351)
79 4asc_A Kelch repeat and BTB do 55.5 1.2E+02 0.004 27.3 12.3 17 136-153 141-157 (315)
80 3iz6_a 40S ribosomal protein R 55.2 1.3E+02 0.0044 27.8 18.2 70 236-305 251-327 (380)
81 1k3i_A Galactose oxidase precu 55.2 1.8E+02 0.0062 29.5 15.1 71 136-211 458-533 (656)
82 2xyi_A Probable histone-bindin 55.1 1.4E+02 0.0048 28.1 25.9 186 90-306 203-409 (430)
83 3p6j_A De novo designed beta-t 54.7 82 0.0028 25.3 11.7 108 176-302 28-138 (142)
84 3uc1_A DNA gyrase subunit A; D 54.5 1.3E+02 0.0046 27.7 20.7 224 67-313 42-285 (327)
85 3v7d_B Cell division control p 53.1 1.5E+02 0.0052 27.9 32.8 199 69-305 125-339 (464)
86 3no2_A Uncharacterized protein 52.6 1.2E+02 0.0043 26.8 21.7 25 236-260 177-203 (276)
87 1zgk_A Kelch-like ECH-associat 52.5 1.3E+02 0.0044 26.9 14.7 17 288-305 160-176 (308)
88 3sfz_A APAF-1, apoptotic pepti 51.4 2.7E+02 0.0094 30.4 24.0 151 127-306 1046-1206(1249)
89 1wp5_A Topoisomerase IV; broke 51.2 1.5E+02 0.0051 27.3 12.9 125 183-313 46-180 (323)
90 4gga_A P55CDC, cell division c 50.6 1.6E+02 0.0055 27.5 27.7 186 75-305 114-308 (420)
91 2xzm_R RACK1; ribosome, transl 50.0 1.5E+02 0.005 26.8 23.6 166 117-304 13-200 (343)
92 3uc1_A DNA gyrase subunit A; D 50.0 1.6E+02 0.0054 27.2 16.7 118 183-306 49-175 (327)
93 1suu_A DNA gyrase subunit A; t 49.7 1.5E+02 0.0053 27.0 19.6 168 135-313 8-187 (312)
94 3mkq_A Coatomer beta'-subunit; 49.4 2.3E+02 0.008 29.0 29.3 189 67-305 14-215 (814)
95 2ymu_A WD-40 repeat protein; u 47.2 2.1E+02 0.0072 27.8 26.8 144 126-304 386-536 (577)
96 2xn4_A Kelch-like protein 2; s 47.1 1.5E+02 0.0052 26.2 15.2 17 188-208 197-213 (302)
97 2xn4_A Kelch-like protein 2; s 45.8 1.6E+02 0.0054 26.0 16.7 17 289-306 244-260 (302)
98 3vl1_A 26S proteasome regulato 45.2 1.9E+02 0.0064 26.7 28.3 70 235-306 291-364 (420)
99 4aow_A Guanine nucleotide-bind 43.8 1.7E+02 0.0058 25.8 26.6 65 236-305 217-284 (340)
100 3frx_A Guanine nucleotide-bind 42.7 1.8E+02 0.0063 25.9 22.8 67 67-152 66-136 (319)
101 2pm7_B Protein transport prote 42.5 1.8E+02 0.006 25.6 26.4 196 67-305 10-236 (297)
102 2woz_A Kelch repeat and BTB do 42.2 1.9E+02 0.0064 25.8 10.9 16 136-152 151-166 (318)
103 3sfz_A APAF-1, apoptotic pepti 41.5 3.8E+02 0.013 29.2 25.3 146 127-306 1005-1157(1249)
104 4ery_A WD repeat-containing pr 40.4 1.9E+02 0.0065 25.4 28.9 191 67-305 66-266 (312)
105 3ei3_B DNA damage-binding prot 37.8 2.3E+02 0.008 25.7 22.9 154 120-306 68-235 (383)
106 3mkq_A Coatomer beta'-subunit; 37.6 3.5E+02 0.012 27.6 25.7 189 67-306 56-258 (814)
107 3dm0_A Maltose-binding peripla 37.1 3.4E+02 0.012 27.4 27.7 190 67-306 431-631 (694)
108 3gre_A Serine/threonine-protei 37.0 2.6E+02 0.0088 25.9 17.1 163 125-306 63-244 (437)
109 2pbi_B Guanine nucleotide-bind 36.7 2.4E+02 0.0083 25.5 24.2 69 235-305 241-313 (354)
110 3q7m_A Lipoprotein YFGL, BAMB; 35.6 2.6E+02 0.0088 25.5 11.0 57 244-303 318-374 (376)
111 1zi0_A DNA gyrase subunit A; b 34.1 2.7E+02 0.0092 25.2 23.1 223 64-310 39-280 (307)
112 1wp5_A Topoisomerase IV; broke 32.9 2.9E+02 0.0099 25.3 21.7 226 65-313 37-283 (323)
113 3iz6_a 40S ribosomal protein R 32.3 3E+02 0.01 25.2 19.4 162 126-305 206-373 (380)
114 3lrv_A PRE-mRNA-splicing facto 29.6 3E+02 0.01 24.5 19.1 110 127-263 127-244 (343)
115 1vyh_C Platelet-activating fac 29.4 3.5E+02 0.012 25.1 24.9 56 246-305 310-367 (410)
116 2xzm_R RACK1; ribosome, transl 29.0 3.1E+02 0.011 24.5 26.5 190 67-305 77-283 (343)
117 2ynn_A Coatomer subunit beta'; 28.9 3E+02 0.01 24.1 28.8 193 67-305 14-215 (304)
118 2xyi_A Probable histone-bindin 26.9 3.9E+02 0.013 24.9 26.7 167 127-306 130-308 (430)
119 3p6j_A De novo designed beta-t 25.1 2.6E+02 0.009 22.3 10.8 107 126-259 30-139 (142)
120 2uvk_A YJHT; unknown function, 24.2 1.8E+02 0.0063 26.4 7.5 17 187-207 110-126 (357)
121 1suu_A DNA gyrase subunit A; t 23.6 4.1E+02 0.014 24.0 24.6 223 63-309 43-285 (312)
122 3frx_A Guanine nucleotide-bind 23.4 3.8E+02 0.013 23.6 23.1 160 118-306 10-184 (319)
123 3ow8_A WD repeat-containing pr 23.3 3.9E+02 0.013 23.7 26.0 188 67-305 81-277 (321)
124 3l6v_A GYRA, DNA gyrase subuni 22.7 4.7E+02 0.016 24.4 16.4 160 181-381 51-256 (370)
125 1q7f_A NHL, brain tumor CG1071 22.5 3.7E+02 0.013 23.0 16.6 184 78-307 80-271 (286)
126 4e54_B DNA damage-binding prot 20.0 5.3E+02 0.018 23.9 15.4 69 178-261 120-194 (435)
127 4e54_B DNA damage-binding prot 20.0 5.3E+02 0.018 23.9 20.8 57 244-305 221-280 (435)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.8e-70 Score=542.54 Aligned_cols=364 Identities=25% Similarity=0.384 Sum_probs=324.2
Q ss_pred hcccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCC
Q 013470 29 EEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGE 108 (442)
Q Consensus 29 ~~~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~ 108 (442)
..+++++||+||+|.+||||.++..+...|+++..+...+|++|+||..|+++|++ ||+||+||.|.+||||.+.
T Consensus 15 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~-----~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA-----DGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEET-----TSCEEEEECCGGGTTSSSS
T ss_pred eECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcC-----CCcEEEEECCCCCCCCCCC
Confidence 44778999999999999999988888888999887777799999999999999999 9999999999999999999
Q ss_pred CcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC
Q 013470 109 MVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR 188 (442)
Q Consensus 109 ~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~ 188 (442)
......|+++..+.....++++|+||.+|+++|+++|+||+||.|.+||||.+.......|..+..+.+.+|++|+||..
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~ 169 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA 169 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC
Confidence 88899999999887755677899999999999999999999999999999999988888999999888889999999999
Q ss_pred ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCC
Q 013470 189 HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNST 266 (442)
Q Consensus 189 h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~ 266 (442)
|+++|++ +|+||+||.|.+||||.+.. .....|..+..+...+|++|+||. .|+++|+++|+||+||.|.++|
T Consensus 170 hs~alt~---~G~v~~wG~n~~GqLG~~~~--~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~Gq 244 (389)
T 3kci_A 170 HSACVTA---AGDLYTWGKGRYGRLGHSDS--EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244 (389)
T ss_dssp EEEEEET---TSCEEEEECCGGGTTCSSSC--CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGT
T ss_pred eEEEEeC---CCeEEEeCCCCCCCcCCCCC--cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCC
Confidence 9999999 99999999999999999843 445678888888888999999995 8999999999999999999999
Q ss_pred CCCC------CccccC--CCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccE
Q 013470 267 SDVN------CPQSLP--SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKV 338 (442)
Q Consensus 267 ~~~~------~p~~i~--~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I 338 (442)
++.. .|..+. ...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++..+.+.+|
T Consensus 245 LG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-----~~~P~~v~~l~~~~v 319 (389)
T 3kci_A 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH-----VRRPRQVQGLQGKKV 319 (389)
T ss_dssp TSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCC-----EEEEEECGGGTTCCE
T ss_pred CCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcc-----ccCCeEeccCCCCCE
Confidence 8753 344443 455799999999999999999999999999999999986543 445777888888899
Q ss_pred EEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccccCCC
Q 013470 339 IQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRD 418 (442)
Q Consensus 339 ~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~ 418 (442)
++|+||.+|+++++ ++|+||+||+|.+||||.++..+...|+.|..+...
T Consensus 320 ~~ia~G~~h~~al~--------------------------~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~---- 369 (389)
T 3kci_A 320 IAIATGSLHCVCCT--------------------------EDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGK---- 369 (389)
T ss_dssp EEEEECSSEEEEEE--------------------------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS----
T ss_pred EEEEeccCeEEEEC--------------------------CCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCC----
Confidence 99999999999999 999999999999999999999999999999876544
Q ss_pred ceEEEecCCCeEEEecCCc
Q 013470 419 TQLEVFCGSGFTYAISRHC 437 (442)
Q Consensus 419 ~~~~i~~G~~~t~~l~~~~ 437 (442)
+|.+|+||.+||++|+++.
T Consensus 370 ~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 370 KVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp CCCEEEEETTEEEEECC--
T ss_pred CEEEEEecCCcEEEEecCC
Confidence 8999999999999999864
No 2
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=9e-66 Score=518.26 Aligned_cols=362 Identities=23% Similarity=0.318 Sum_probs=307.4
Q ss_pred cccccEEEEecCCCCCCCCCCCCC-CccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCC
Q 013470 30 EQQVVKVWSWGAGTDGQLGTGRLH-DELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGE 108 (442)
Q Consensus 30 ~~~~~~v~~~G~n~~gqLG~~~~~-~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~ 108 (442)
.+++++||+||.|.+||||.+... +...|.++. ....|++|+||..|+++|++ ||+||+||.|.+||||.+.
T Consensus 39 l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~--~l~~v~~va~G~~h~~~l~~-----~G~v~~wG~n~~GqLG~~~ 111 (423)
T 3mvd_K 39 RTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVA--GIPDAVDISAGGMHNLVLTK-----SGDIYSFGCNDEGALGRDT 111 (423)
T ss_dssp CCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECC--SCSSEEEEEECSSEEEEEET-----TSCEEEEECCSSSTTCSCC
T ss_pred ecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEcc--CCCCceEEeeCCCeEEEEeC-----CCeEEEeECCCCcCCCCCC
Confidence 478899999999999999998653 334565554 44689999999999999999 9999999999999999987
Q ss_pred CcC--eecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCC--CCCcccCCCCCCCcccceEEeecCCCceEEEE
Q 013470 109 MVD--ALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGD--GTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIA 184 (442)
Q Consensus 109 ~~~--~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~--n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~ 184 (442)
... ...|.++.... +|++|+||.+|+++|+++|+||+||. |.+||||.+.......|..+ +...+|++|+
T Consensus 112 ~~~~~~~~P~~v~~~~----~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va 185 (423)
T 3mvd_K 112 SEDGSESKPDLIDLPG----KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIA 185 (423)
T ss_dssp CSTTSSSSCEECCCSS----CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES--STTCCEEEEE
T ss_pred cCCccccCCeEEcCCC----CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe--cCCCcEEEEe
Confidence 764 67888887554 59999999999999999999999999 99999999877666555544 4567899999
Q ss_pred eCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCC---------CceeecCeEeeccCCCcEEEEEecCCeEEEE-cCCC
Q 013470 185 CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDR---------IRSVSLPQVTIGLHDIEIVGISANGDRSAAL-SAEG 254 (442)
Q Consensus 185 ~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~---------~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~l-t~~G 254 (442)
||.+|+++|++ +|+||+||.|.+||||.+... ......|..+......+|++|+||..|++++ +++|
T Consensus 186 ~G~~hs~alt~---~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g 262 (423)
T 3mvd_K 186 SGADHLVILTT---AGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQ 262 (423)
T ss_dssp ECSSEEEEEET---TSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTC
T ss_pred cCCCeEEEEec---CCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCC
Confidence 99999999999 999999999999999987532 2344578888777777899999999999999 6999
Q ss_pred cEEEeeCCCCCCCCCC--------CccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccc
Q 013470 255 HLYTWGRGFNSTSDVN--------CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVA 326 (442)
Q Consensus 255 ~vy~wG~~~~~~~~~~--------~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~ 326 (442)
+||+||.|.++|++.. .|..+. ..+|++|+||..|+++|+++|+||+||.|.+||||.+..... ...
T Consensus 263 ~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~----~~~ 337 (423)
T 3mvd_K 263 VIWATGLNNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDV----VEK 337 (423)
T ss_dssp CEEEEEECTTCTTSSCCTTCSEEEEEEEEC-CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSC----EEE
T ss_pred eEEEEeCCCCCcCCCCCCCCceeeeeEEcC-CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCcccc----ccC
Confidence 9999999999998762 233333 568999999999999999999999999999999999875432 334
Q ss_pred eeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcE
Q 013470 327 LEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPK 406 (442)
Q Consensus 327 ~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~ 406 (442)
|..+..+.+ +|++|+||.+|+++|+ ++|+||+||.|.+||||.++..+...|+
T Consensus 338 p~~v~~l~~-~v~~ia~G~~hs~alt--------------------------~~G~v~~wG~n~~GqLG~g~~~~~~~P~ 390 (423)
T 3mvd_K 338 PTIVKKLTE-KIVSVGCGEVCSYAVT--------------------------IDGKLYSWGSGVNNQLGVGDGDDELEPI 390 (423)
T ss_dssp EEECTTCCS-CEEEEEEETTEEEEEE--------------------------TTSCEEEEECCTTSCSSSSSSCCEEEEE
T ss_pred ceEeccCCC-CEEEEEcCCCeEEEEc--------------------------CCCCEEEECCCCCCCCCCCCCCCcccCe
Confidence 666776666 8999999999999999 9999999999999999999999999999
Q ss_pred EEecCccccCCCceEEEecCCCeEEEecCCccCCC
Q 013470 407 VVNLGDEFQNRDTQLEVFCGSGFTYAISRHCLPSQ 441 (442)
Q Consensus 407 ~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~~~~~~ 441 (442)
+|..... ...+|.+|+||.+||++|+++.-..|
T Consensus 391 ~v~~~~~--~~~~v~~va~G~~ht~~l~~~~k~~~ 423 (423)
T 3mvd_K 391 VVVSKNT--QGKHMLLASGGGQHAIFLVKADKQDQ 423 (423)
T ss_dssp ECCSTTT--TTCCEEEEEECSSEEEEEEECC----
T ss_pred EEeCccc--CCCEEEEEEECCCcEEEEEcccccCC
Confidence 9985321 22379999999999999998864433
No 3
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.1e-65 Score=514.50 Aligned_cols=362 Identities=28% Similarity=0.498 Sum_probs=318.0
Q ss_pred hhhhhhccCcceeecCCCccchhhhhcccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEe
Q 013470 4 PLMEETEKGKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALT 83 (442)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt 83 (442)
+-++........+.....+...+ +++++||+||+|.+||||.++..+...|+++..+...+|++|+||..|+++|+
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al----~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~ 84 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVAL----LSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYS 84 (406)
T ss_dssp ------CCCEEEEEECSSEEEEE----ETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEE
T ss_pred ccCCCCccceEEEecCCCeEEEE----EeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEE
Confidence 34444455556777777777766 56899999999999999999999988899888777789999999999999999
Q ss_pred CCCcccCC-eEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCC
Q 013470 84 SPSSVIGG-KVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGD 162 (442)
Q Consensus 84 ~~~~~~dg-~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~ 162 (442)
+ ++ +||+||.|.+||||.++......|.++..+.. .+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus 85 ~-----~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~--~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~ 157 (406)
T 4d9s_A 85 Q-----SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHG--IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD 157 (406)
T ss_dssp T-----TTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTT--CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred C-----CCCEEEEEcCCCCcCCCCCCCCccccceEecccCC--CCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC
Confidence 9 75 99999999999999999988999999998877 7899999999999999999999999999999999999
Q ss_pred CCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEe
Q 013470 163 YRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISA 242 (442)
Q Consensus 163 ~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~ 242 (442)
......|.++..+.+.+|++|+||.+|+++|++ +|+||+||.|.++|||.+.. .....|..+..+...+|++|+|
T Consensus 158 ~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~---~G~v~~wG~n~~GqlG~g~~--~~~~~p~~v~~~~~~~i~~va~ 232 (406)
T 4d9s_A 158 TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE---DGDLYGWGWGRYGNLGLGDR--TDRLVPERVTSTGGEKMSMVAC 232 (406)
T ss_dssp CCCEEEEEECGGGTTCCEEEEEECSSEEEEEET---TSCEEEEECCTTSTTCSSSS--CCEEEEEECCCSTTCCEEEEEE
T ss_pred CCCcccceEecccCCCcEEEEecCCCeEEEEeC---CCCEEEeeCCCCCCCCCCCC--CCcCccEEecccCCceEEEEEE
Confidence 988889999998888899999999999999999 99999999999999999843 3456788888777789999999
Q ss_pred cCCeEEEEcCCCcEEEeeCCCCCCCCCC------CccccC--CCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCC
Q 013470 243 NGDRSAALSAEGHLYTWGRGFNSTSDVN------CPQSLP--SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDP 314 (442)
Q Consensus 243 g~~~s~~lt~~G~vy~wG~~~~~~~~~~------~p~~i~--~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~ 314 (442)
|..|+++|+++|+||+||.|.++|++.. .|..+. ...+|++|+||..|+++|+++|+||+||.|.+||||.+
T Consensus 233 G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCC
Confidence 9999999999999999999999998753 344443 45679999999999999999999999999999999998
Q ss_pred CCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcc
Q 013470 315 ERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQL 394 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqL 394 (442)
.... ...|.++..+...+|++|+||.+|+++|+ ++|+||+||+|.+|||
T Consensus 313 ~~~~-----~~~p~~v~~~~~~~v~~va~G~~hs~alt--------------------------~~G~v~~wG~n~~GqL 361 (406)
T 4d9s_A 313 NNLD-----QCSPVQVRFPDDQKVVQVSCGWRHTLAVT--------------------------ERNNVFAWGRGTNGQL 361 (406)
T ss_dssp SSSC-----EEEEEEECCGGGCCEEEEEECSSEEEEEE--------------------------TTSCEEEEECCTTSTT
T ss_pred CCCC-----CccCEEEeccCCCcEEEEEeCCCeEEEEe--------------------------CCCCEEEecCCCCCcc
Confidence 7554 33455665555668999999999999999 9999999999999999
Q ss_pred cCCCCCCccCcEEEecCc
Q 013470 395 GLGNTCDQIHPKVVNLGD 412 (442)
Q Consensus 395 G~g~~~~~~~p~~v~~~~ 412 (442)
|+|+..++..|+.|+.+.
T Consensus 362 G~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 362 GIGESVDRNFPKIIEALS 379 (406)
T ss_dssp CSSSCCCEEEEEECGGGC
T ss_pred CCCCCCCCcCCEEeeeec
Confidence 999999999999998654
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.7e-65 Score=514.51 Aligned_cols=358 Identities=26% Similarity=0.393 Sum_probs=301.7
Q ss_pred cccccEEEEecCCCCCCCCCCCCCC-ccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCC
Q 013470 30 EQQVVKVWSWGAGTDGQLGTGRLHD-ELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGE 108 (442)
Q Consensus 30 ~~~~~~v~~~G~n~~gqLG~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~ 108 (442)
.+++++||+||.|.+||||.+...+ ...|+++..+ .+|++|+||..|+++|++ ||+||+||.|.+||||.+.
T Consensus 23 l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~-----~G~v~~wG~n~~GqLG~~~ 95 (413)
T 1a12_A 23 STEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSK-----SGQVYSFGCNDEGALGRDT 95 (413)
T ss_dssp CCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEET-----TSCEEEEECCTTSTTCSCC
T ss_pred ecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcC-----CCCEEEEECCCCCCCCCCC
Confidence 3678999999999999999998665 4567777643 799999999999999999 9999999999999999987
Q ss_pred Cc--CeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCC--CCCcccCCCCCCCc-ccceEEeecCCCceEEE
Q 013470 109 MV--DALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGD--GTFGQLGHGDYRSH-SSPVKVSSFVNKNVHQI 183 (442)
Q Consensus 109 ~~--~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~--n~~gqlG~~~~~~~-~~p~~v~~~~~~~I~~I 183 (442)
.. ....|+++.+. .+|++|+||.+|+++|+++|+||+||. |.+||||.+..... ..|.++ +...+|++|
T Consensus 96 ~~~~~~~~P~~v~l~----~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~i 169 (413)
T 1a12_A 96 SVEGSEMVPGKVELQ----EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKV 169 (413)
T ss_dssp CSTTGGGSCEECCCC----SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEE
T ss_pred CCCccccCCeEecCC----CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEE
Confidence 63 46678888653 369999999999999999999999999 99999998866433 347776 345689999
Q ss_pred EeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCC---------ceeecCeEeecc-----CCCcEEEEEecCCeEEE
Q 013470 184 ACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI---------RSVSLPQVTIGL-----HDIEIVGISANGDRSAA 249 (442)
Q Consensus 184 ~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~---------~~~~~p~~v~~~-----~~~~i~~i~~g~~~s~~ 249 (442)
+||.+|+++|++ +|+||+||.|.+||||.+.... .....|..+... ...+|++|+||..|+++
T Consensus 170 a~G~~hs~alt~---~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~a 246 (413)
T 1a12_A 170 ASGNDHLVMLTA---DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFA 246 (413)
T ss_dssp EECSSEEEEEET---TSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEE
T ss_pred EecCceEEEEcC---CCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEE
Confidence 999999999999 9999999999999999874321 123456555542 34689999999999999
Q ss_pred EcCCCcEEEeeCCCCCCCCCC------CccccCC--C--CCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCC
Q 013470 250 LSAEGHLYTWGRGFNSTSDVN------CPQSLPS--S--LSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSS 319 (442)
Q Consensus 250 lt~~G~vy~wG~~~~~~~~~~------~p~~i~~--~--~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~ 319 (442)
|+++|+||+||.|.++|++.. .|..+.. . .+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 247 lt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~- 325 (413)
T 1a12_A 247 ISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAE- 325 (413)
T ss_dssp EETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCC-
T ss_pred EeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCc-
Confidence 999999999999999998753 3555532 2 4699999999999999999999999999999999974332
Q ss_pred CCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCC
Q 013470 320 TRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNT 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~ 399 (442)
....|..++.+. +|++|+||.+|+++++ ++|+||+||.|.+||||.++.
T Consensus 326 ---~~~~P~~v~~l~--~v~~v~~G~~hs~alt--------------------------~~G~v~~wG~n~~gqLG~g~~ 374 (413)
T 1a12_A 326 ---EKSIPTLISRLP--AVSSVACGASVGYAVT--------------------------KDGRVFAWGMGTNYQLGTGQD 374 (413)
T ss_dssp ---CEEEEEECCSSS--SEEEEEECSSEEEEEE--------------------------TTSCEEEEECCTTSTTCSSSC
T ss_pred ---cccCCEEecccC--ceeEEEECcceEEEEe--------------------------CCCCEEEecCCCCCCCCCCCC
Confidence 244567777665 8999999999999999 999999999999999999999
Q ss_pred CCccCcEEEecCccccCCCceEEEecCCCeEEEecCCc
Q 013470 400 CDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC 437 (442)
Q Consensus 400 ~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~~ 437 (442)
.+...|++|.... ....+|.+|+||.+||++|+++.
T Consensus 375 ~~~~~P~~v~~~~--~~~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 375 EDAWSPVEMMGKQ--LENRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp SCEEEEEECCSTT--TTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCcccCeEccccc--cCCCeEEEEeeCCCcEEEEEecC
Confidence 8888898887531 12238999999999999998764
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-65 Score=518.12 Aligned_cols=379 Identities=26% Similarity=0.380 Sum_probs=310.8
Q ss_pred eeecCCCccchhhhhcccccEEEEecCCCCCCCCCCCCC---CccCCeEEecC--CCCcEEEEEeCCceeEEEeCCCccc
Q 013470 15 ALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLH---DELSPQLLNLS--SLSSVSMLACGGAHVLALTSPSSVI 89 (442)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqLG~~~~~---~~~~p~~v~~~--~~~~i~~I~~G~~h~~~lt~~~~~~ 89 (442)
..+..+..+.+-.-..+++++||+||.|.+||||.+... +...|+++..+ ...+|++|+||..|+++|++
T Consensus 10 ~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~----- 84 (473)
T 3of7_A 10 SHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDE----- 84 (473)
T ss_dssp TTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEET-----
T ss_pred hhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEec-----
Confidence 345556666666667788999999999999999999854 34456666554 44699999999999999999
Q ss_pred CCeEEEEeCCCCCCCCCCCCcC-----------------------eecceEeee--c----CCCcceEEEEeecCceEEE
Q 013470 90 GGKVFSWGRGSSGQLGHGEMVD-----------------------ALYPKPVTF--F----DGHRYTITHISAGWNHSGF 140 (442)
Q Consensus 90 dg~v~~wG~n~~gqlG~~~~~~-----------------------~~~p~~i~~--~----~~~~~~i~~vs~G~~~s~~ 140 (442)
+|+||+||.|.+||||.+.... ...|+++.. + .. .+|++|+||..|+++
T Consensus 85 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~--~~i~~va~G~~hs~a 162 (473)
T 3of7_A 85 ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEG--HKVVQLAATDNMSCA 162 (473)
T ss_dssp TCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTT--CCEEEEEECSSEEEE
T ss_pred CCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCC--CcEEEEEccCCEEEE
Confidence 9999999999999999987654 557888874 3 23 579999999999999
Q ss_pred EEeCCCEEEeCC--CCCcccCCCCC--CCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGD--GTFGQLGHGDY--RSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVS 216 (442)
Q Consensus 141 lt~~g~vy~~G~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~ 216 (442)
|+++|+||+||. +.+||||.... .....|.++..+.+.+|++|+||.+|+++|++ +|+||+||.|.+||||.+
T Consensus 163 lt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~---~G~v~~wG~n~~GqLG~~ 239 (473)
T 3of7_A 163 LFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDE---EGMVFAWGNGQQNQLGRK 239 (473)
T ss_dssp EETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEET---TSCEEEEECCTTSTTSSC
T ss_pred EeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeC---CCeEEEEeCCCCCCCCCC
Confidence 999999999998 67899998543 35567888888877789999999999999999 999999999999999987
Q ss_pred CCCC--ceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC----------CccccC--CCCCee
Q 013470 217 KDRI--RSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN----------CPQSLP--SSLSFS 282 (442)
Q Consensus 217 ~~~~--~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~----------~p~~i~--~~~~i~ 282 (442)
.... .....|..+.. .+|++|+||.+|+++|+++|+||+||.|.++|++.. .|..+. ...+|+
T Consensus 240 ~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~ 316 (473)
T 3of7_A 240 VMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIR 316 (473)
T ss_dssp CCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEE
T ss_pred ccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEE
Confidence 4322 12345555532 479999999999999999999999999999998753 244443 346899
Q ss_pred EEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCC---------CCccccceeeeccCCCccEEEEeecCCeeEEEeC
Q 013470 283 QAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSS---------TRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTG 353 (442)
Q Consensus 283 ~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~---------~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~ 353 (442)
+|+||..|+++|+++|+||+||.|.+||||.+..... .......|..+..+. +|++|+||.+|+++|+
T Consensus 317 ~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~- 393 (473)
T 3of7_A 317 SIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVA- 393 (473)
T ss_dssp EEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEE-
T ss_pred EEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEe-
Confidence 9999999999999999999999999999998754211 011233455555443 8999999999999999
Q ss_pred cccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCC-CCCccCcEEEecCccccCCCceEEEecCCCeEEE
Q 013470 354 KFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGN-TCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYA 432 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~-~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~ 432 (442)
++|+||+||.|.+||||+++ ..+...|++|+.... ...++++|+||.+||++
T Consensus 394 -------------------------~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~--~~~~v~~v~cG~~~s~~ 446 (473)
T 3of7_A 394 -------------------------QNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTAT--QDHNIILVGCGGQFSVS 446 (473)
T ss_dssp -------------------------TTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTT--TTEEEEEEEECSSEEEE
T ss_pred -------------------------CCCcEEEeeCCCCCCCCCCCCCccccCCeEeccccc--CCCeEEEEeeCCCeEEE
Confidence 99999999999999999999 778889999985422 22379999999999999
Q ss_pred ecCC
Q 013470 433 ISRH 436 (442)
Q Consensus 433 l~~~ 436 (442)
+..+
T Consensus 447 ~~~~ 450 (473)
T 3of7_A 447 GGVK 450 (473)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9875
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.5e-61 Score=484.52 Aligned_cols=325 Identities=31% Similarity=0.575 Sum_probs=295.4
Q ss_pred CCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCC
Q 013470 66 LSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSG 145 (442)
Q Consensus 66 ~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g 145 (442)
..+|++|+||..|+++|++ +|+||+||.|.+||||.++..+...|+++..+.. .+|++|+||..|+++|+++|
T Consensus 15 ~~~v~~ia~G~~hs~al~~-----~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~--~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDG--HQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp CCCEEEEEECSSEEEEEET-----TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTT--SCEEEEEECSSEEEEEETTT
T ss_pred ccceEEEecCCCeEEEEEe-----CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCC--CCEEEEEeCcceEEEEECCC
Confidence 3699999999999999999 9999999999999999999999999999998876 78999999999999999886
Q ss_pred -CEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceee
Q 013470 146 -CLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVS 224 (442)
Q Consensus 146 -~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~ 224 (442)
+||+||.|.+||||.+.......|.++..+.+.+|++|+||..|+++|++ +|+||+||.|.+||||.+. .....
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~---~G~v~~wG~n~~GqLG~g~--~~~~~ 162 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM---EGEVQSWGRNQNGQLGLGD--TEDSL 162 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEET---TSCEEEEECCTTSTTCSSS--CCCEE
T ss_pred CEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcC---CCcEEEeCCCCCccCCCCC--CCCcc
Confidence 99999999999999999888888999988888899999999999999999 9999999999999999984 34456
Q ss_pred cCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC------CccccC--CCCCeeEEEeCCCeEEEEEC
Q 013470 225 LPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN------CPQSLP--SSLSFSQAALGWNHVLVLTG 296 (442)
Q Consensus 225 ~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~------~p~~i~--~~~~i~~i~~G~~~~~~l~~ 296 (442)
.|..+..+.+.+|++|+||..|+++|+++|+||+||.|.++|++.. .|..+. ...+|++|+||..|+++|++
T Consensus 163 ~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~ 242 (406)
T 4d9s_A 163 VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY 242 (406)
T ss_dssp EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEET
T ss_pred cceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcC
Confidence 7888888888899999999999999999999999999999998753 344443 35789999999999999999
Q ss_pred CCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceee
Q 013470 297 DGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINV 376 (442)
Q Consensus 297 ~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
+|+||+||.|.+||||.++... ...|.++..+.+.+|++|+||.+|+++|+
T Consensus 243 ~G~v~~wG~n~~GqlG~g~~~~-----~~~p~~v~~~~~~~v~~i~~G~~hs~alt------------------------ 293 (406)
T 4d9s_A 243 SGALYTYGWSKYGQLGHGDLED-----HLIPHKLEALSNSFISQISGGWRHTMALT------------------------ 293 (406)
T ss_dssp TCCEEEEECCTTSTTCSSSCCC-----EEEEEECGGGTTSCEEEEEECSSEEEEEE------------------------
T ss_pred CCCEEEeeCCCCCCCCCCCCcC-----ccccEEecccCCCCEEEEEecCCEEEEEc------------------------
Confidence 9999999999999999976543 45577777788788999999999999999
Q ss_pred eccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccccCCCceEEEecCCCeEEEecCCc
Q 013470 377 IAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC 437 (442)
Q Consensus 377 ~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~~ 437 (442)
++|+||+||+|.+||||.++..+...|++|.++... +|.+|+||.+|+++|+++-
T Consensus 294 --~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~----~v~~va~G~~hs~alt~~G 348 (406)
T 4d9s_A 294 --SDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ----KVVQVSCGWRHTLAVTERN 348 (406)
T ss_dssp --TTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGC----CEEEEEECSSEEEEEETTS
T ss_pred --CCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCC----cEEEEEeCCCeEEEEeCCC
Confidence 999999999999999999999999999999877544 8999999999999998763
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-57 Score=451.46 Aligned_cols=320 Identities=26% Similarity=0.413 Sum_probs=271.0
Q ss_pred EEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEE
Q 013470 70 SMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFT 149 (442)
Q Consensus 70 ~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~ 149 (442)
+++..-..+.++|++ ||+||+||.|.+||||.++......|+++..+.. .+|++|+||..|+++|+++|+||+
T Consensus 4 ~~~~~~~~~~~~l~~-----~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~l~~~G~v~~ 76 (389)
T 3kci_A 4 HHHHSSGRENLYFQG-----SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAT--LRPVQLIGGEQTLFAVTADGKLYA 76 (389)
T ss_dssp ----------------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHH--TCEEEEEEETTEEEEEETTSCEEE
T ss_pred cccccCcccceeECC-----CCeEEEeeCCCCccCCCCcCccccCCEecccccC--CceEEEEeCCCeEEEEcCCCcEEE
Confidence 445566778899999 9999999999999999988888889999988776 689999999999999999999999
Q ss_pred eCCCCCcccCCCCCCCcccceEEeecCCC--ceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCe
Q 013470 150 CGDGTFGQLGHGDYRSHSSPVKVSSFVNK--NVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQ 227 (442)
Q Consensus 150 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~--~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~ 227 (442)
||.|.+||||.+.......|..+..+... ++++|+||.+|+++|++ +|+||+||.|.+||||.+. ......|.
T Consensus 77 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~---~G~v~~wG~n~~GqLG~g~--~~~~~~p~ 151 (389)
T 3kci_A 77 TGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS---EGEVYSWGEAEDGKLGHGN--RSPCDRPR 151 (389)
T ss_dssp EECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEET---TSCEEEEECCGGGTTCSSS--CCCEEEEE
T ss_pred EECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcC---CCCEEEEeCCCCCcCCCCC--CccCcCCe
Confidence 99999999999988888889988877655 45789999999999999 9999999999999999984 34456788
Q ss_pred EeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC------Ccccc--CCCCCeeEEEeCC--CeEEEEECC
Q 013470 228 VTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN------CPQSL--PSSLSFSQAALGW--NHVLVLTGD 297 (442)
Q Consensus 228 ~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~------~p~~i--~~~~~i~~i~~G~--~~~~~l~~~ 297 (442)
.+..+.+.+|++|+||..|+++|+++|+||+||.|.++|++.. .|..+ +...+|++|+||. .|+++|+++
T Consensus 152 ~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~ 231 (389)
T 3kci_A 152 VIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231 (389)
T ss_dssp ECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETT
T ss_pred EecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccC
Confidence 8888888899999999999999999999999999999998753 34444 3467899999995 899999999
Q ss_pred CcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceeeeEeccCCCCCccceeee
Q 013470 298 GEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVI 377 (442)
Q Consensus 298 G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (442)
|+||+||.|.+||||.+.... ...|.++..+.+.+|++|+||.+|+++|+
T Consensus 232 G~v~~wG~n~~GqLG~g~~~~-----~~~p~~v~~~~~~~v~~v~~G~~hs~alt------------------------- 281 (389)
T 3kci_A 232 DTVWSWGDGDYGKLGRGGSDG-----CKVPMKIDSLTGLGVVKVECGSQFSVALT------------------------- 281 (389)
T ss_dssp TEEEEEECCGGGTTSSSSCCC-----EEEEEECGGGTTSCEEEEEEETTEEEEEE-------------------------
T ss_pred CEEEEEeCCCCCCCCCCCCCC-----ccccEEecccCCCcEEEEeCCCCEEEEEe-------------------------
Confidence 999999999999999976543 44577777788788999999999999999
Q ss_pred ccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccccCCCceEEEecCCCeEEEecCC
Q 013470 378 AENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRH 436 (442)
Q Consensus 378 ~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~ 436 (442)
++|+||+||.|.+||||.++..+...|++|..+... +|++|+||.+|+++|+++
T Consensus 282 -~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~----~v~~ia~G~~h~~al~~~ 335 (389)
T 3kci_A 282 -KSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK----KVIAIATGSLHCVCCTED 335 (389)
T ss_dssp -TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC----CEEEEEECSSEEEEEETT
T ss_pred -CCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC----CEEEEEeccCeEEEECCC
Confidence 999999999999999999999888899999876543 899999999999999876
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-56 Score=449.35 Aligned_cols=312 Identities=25% Similarity=0.392 Sum_probs=267.5
Q ss_pred EEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcC-eecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEE
Q 013470 71 MLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVD-ALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFT 149 (442)
Q Consensus 71 ~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~-~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~ 149 (442)
+.+.+..|+++|++ +|+||+||.|.+||||.++... ...|+++..+. +|++|+||..|+++|+++|+||+
T Consensus 12 ~~~~~~~h~~~l~~-----~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~----~i~~va~G~~hs~~l~~~G~v~~ 82 (413)
T 1a12_A 12 SKKVKVSHRSHSTE-----PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE----DVVQAEAGGMHTVCLSKSGQVYS 82 (413)
T ss_dssp -CCCCCCCTTCCCC-----CBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS----CEEEEEECSSEEEEEETTSCEEE
T ss_pred hhhhccccceeecC-----CCcEEEEECCCCCcCCCCCCccccccceEccCCC----CeEEEEeCCCeEEEEcCCCCEEE
Confidence 55677899999999 9999999999999999998664 67888888654 59999999999999999999999
Q ss_pred eCCCCCcccCCCCCC--CcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCC--CCCCCCCCCCCCCceeec
Q 013470 150 CGDGTFGQLGHGDYR--SHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGS--GKRGQLGVSKDRIRSVSL 225 (442)
Q Consensus 150 ~G~n~~gqlG~~~~~--~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~--n~~gqlg~~~~~~~~~~~ 225 (442)
||.|.+||||.+... ....|.++.. ..+|++|+||.+|+++|++ +|+||+||. |.+||||.+.. ......
T Consensus 83 wG~n~~GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~---~G~v~~wG~~~n~~GqlG~~~~-~~~~~~ 156 (413)
T 1a12_A 83 FGCNDEGALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTD---DGRVFLWGSFRDNNGVIGLLEP-MKKSMV 156 (413)
T ss_dssp EECCTTSTTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEET---TSCEEEEECEEETTEEEESSBB-TBCEEE
T ss_pred EECCCCCCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcC---CCcEEEeeCCcCCCCccCcCCc-cccccC
Confidence 999999999998763 4567877743 2489999999999999999 999999999 89999998743 233345
Q ss_pred CeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC-----------------CccccC-------CCCCe
Q 013470 226 PQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN-----------------CPQSLP-------SSLSF 281 (442)
Q Consensus 226 p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~-----------------~p~~i~-------~~~~i 281 (442)
|..+ +...+|++|+||..|+++|+++|+||+||.|.++|++.. .|..+. ...+|
T Consensus 157 P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i 234 (413)
T 1a12_A 157 PVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 234 (413)
T ss_dssp EEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCE
T ss_pred CEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccE
Confidence 6666 345689999999999999999999999999999998752 343232 34689
Q ss_pred eEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCC--ccEEEEeecCCeeEEEeCccccee
Q 013470 282 SQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDG--VKVIQIAAGAEHSAVVTGKFHWVR 359 (442)
Q Consensus 282 ~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~--~~I~~I~~G~~~s~~l~~~~~~~~ 359 (442)
++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+..+.+ .+|++|+||.+|+++|+
T Consensus 235 ~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~-----~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~------- 302 (413)
T 1a12_A 235 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES-----CFIPQNLTSFKNSTKSWVGFSGGQHHTVCMD------- 302 (413)
T ss_dssp EEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSC-----EEEEEECGGGCCTTCCEEEEEECSSEEEEEE-------
T ss_pred EEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCc-----ccccEEchhccCCCceEEEEecccceEEEEe-------
Confidence 9999999999999999999999999999999986643 345667776665 57999999999999999
Q ss_pred eeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCC-CCCCccCcEEEecCccccCCCceEEEecCCCeEEEecCC
Q 013470 360 LFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLG-NTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRH 436 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g-~~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~ 436 (442)
++|+||+||.|.+||||.+ +..+...|++|+... .|.+|+||.+|+++|+++
T Consensus 303 -------------------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~------~v~~v~~G~~hs~alt~~ 355 (413)
T 1a12_A 303 -------------------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP------AVSSVACGASVGYAVTKD 355 (413)
T ss_dssp -------------------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS------SEEEEEECSSEEEEEETT
T ss_pred -------------------CCCCEEEeeCCCCCccCCCCCCccccCCEEecccC------ceeEEEECcceEEEEeCC
Confidence 9999999999999999999 456777888887654 799999999999999876
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-56 Score=452.94 Aligned_cols=331 Identities=23% Similarity=0.356 Sum_probs=276.0
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCc---CeecceEeeecCCCcceEEEEeecCceEEEEEe
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMV---DALYPKPVTFFDGHRYTITHISAGWNHSGFVSD 143 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~---~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~ 143 (442)
..|....+...|++++++ +++||+||.|.+||||.++.. ....|+++..+.....+|++|+||..|+++|++
T Consensus 10 ~~~~~~~~~~~h~~~~~~-----~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~ 84 (473)
T 3of7_A 10 SHIINAQEDYKHMYLSVQ-----PLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDE 84 (473)
T ss_dssp TTCCCCGGGGHHHHCCSS-----CCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEET
T ss_pred hhhhhhcccccccccCCC-----CccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEec
Confidence 467777889999999999 999999999999999999843 467788777664333689999999999999999
Q ss_pred CCCEEEeCCCCCcccCCCCCCC-----------------------cccceEEee--c----CCCceEEEEeCCCceEEEE
Q 013470 144 SGCLFTCGDGTFGQLGHGDYRS-----------------------HSSPVKVSS--F----VNKNVHQIACGMRHSLVLL 194 (442)
Q Consensus 144 ~g~vy~~G~n~~gqlG~~~~~~-----------------------~~~p~~v~~--~----~~~~I~~I~~G~~h~~~lt 194 (442)
+|+||+||.|.+||||.+.... ...|.++.. + ...+|++|+||..|+++|+
T Consensus 85 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt 164 (473)
T 3of7_A 85 ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF 164 (473)
T ss_dssp TCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE
T ss_pred CCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe
Confidence 9999999999999999987654 457777764 3 3578999999999999999
Q ss_pred eecCCCeeeeeCC--CCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC--
Q 013470 195 KDCLGNQVYGFGS--GKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN-- 270 (442)
Q Consensus 195 ~~~~~G~vy~wG~--n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~-- 270 (442)
+ +|+||+||. +..||||...........|..+..+.+.+|++|+||..|+++|+++|+||+||.|.++|++..
T Consensus 165 ~---~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~ 241 (473)
T 3of7_A 165 S---NGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVM 241 (473)
T ss_dssp T---TSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCC
T ss_pred C---CCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcc
Confidence 9 999999998 678999987666667788999988888889999999999999999999999999999998753
Q ss_pred --------CccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEe
Q 013470 271 --------CPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIA 342 (442)
Q Consensus 271 --------~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~ 342 (442)
.|..+ ...+|++|+||..|+++|+++|+||+||.|.+||||.+...... .....|..+..+.+.+|++|+
T Consensus 242 ~~~~~~~~~p~~~-~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~-~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 242 ERFRLKTLDPRPF-GLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG-ALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp GGGTTTTCSCEEC-SCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTT-CEEEEEEECCCCTTCCEEEEE
T ss_pred ccccccccCceec-CCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCC-ceeeccccccccCCccEEEEE
Confidence 23332 23689999999999999999999999999999999998754321 234567777777778999999
Q ss_pred ecCCeeEEEeCcccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCC------------CccCcEEEec
Q 013470 343 AGAEHSAVVTGKFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTC------------DQIHPKVVNL 410 (442)
Q Consensus 343 ~G~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~------------~~~~p~~v~~ 410 (442)
||.+|+++|+ ++|+||+||.|.+||||.+... ....+.+..+
T Consensus 320 ~G~~hs~~lt--------------------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v 373 (473)
T 3of7_A 320 AGEHHSLILS--------------------------QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKL 373 (473)
T ss_dssp ECSSEEEEEE--------------------------TTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEEC
T ss_pred eCCCeEEEEe--------------------------CCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCccc
Confidence 9999999999 9999999999999999987532 1122233332
Q ss_pred CccccCCCceEEEecCCCeEEEecCCc
Q 013470 411 GDEFQNRDTQLEVFCGSGFTYAISRHC 437 (442)
Q Consensus 411 ~~~~~~~~~~~~i~~G~~~t~~l~~~~ 437 (442)
. ...+|.+|+||.+|+++|+++-
T Consensus 374 ~----~~~~v~~Ia~G~~hs~al~~~G 396 (473)
T 3of7_A 374 N----NVPKFKSVAAGSHHSVAVAQNG 396 (473)
T ss_dssp C----SSCCEEEEEECSSEEEEEETTS
T ss_pred C----CCCceEEEEeCCCeEEEEeCCC
Confidence 2 2227999999999999998763
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-55 Score=443.81 Aligned_cols=317 Identities=23% Similarity=0.289 Sum_probs=264.2
Q ss_pred CCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCC-cCeecceEeeecCCCcceEEEEeecCceEEEEEeC
Q 013470 66 LSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEM-VDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDS 144 (442)
Q Consensus 66 ~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~-~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~ 144 (442)
..++++|++|..|++++++ +|+||+||.|.+||||.+.. .....|+++..+.. |++|+||..|+++|+++
T Consensus 23 ~~~~~~ia~g~~~~~~l~~-----~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~----v~~va~G~~h~~~l~~~ 93 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTV-----LGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD----AVDISAGGMHNLVLTKS 93 (423)
T ss_dssp ------CCCCCCCCCCCCC-----CEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS----EEEEEECSSEEEEEETT
T ss_pred cceeeEEecCCccceeecC-----CCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC----ceEEeeCCCeEEEEeCC
Confidence 4588999999999999999 99999999999999999875 35678888887766 99999999999999999
Q ss_pred CCEEEeCCCCCcccCCCCCCC--cccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCC--CCCCCCCCCCCCC
Q 013470 145 GCLFTCGDGTFGQLGHGDYRS--HSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGS--GKRGQLGVSKDRI 220 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~--~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~--n~~gqlg~~~~~~ 220 (442)
|+||+||.|.+||||.+.... ...|..+... .+|++|+||..|+++|++ +|+||+||. |.++|||.+....
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~---~G~v~~wG~~~n~~GqlG~~~~~~ 168 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLE---DGRVFAWGSFRDSHGNMGLTIDGN 168 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEET---TSCEEEEECEECSSSEEESBTTBC
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeC---CCeEEEEeCCCCCCCCcCcCCCCC
Confidence 999999999999999987754 5677777643 579999999999999999 999999999 9999999874333
Q ss_pred ceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCC-----------------Ccccc--CCCCCe
Q 013470 221 RSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN-----------------CPQSL--PSSLSF 281 (442)
Q Consensus 221 ~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~-----------------~p~~i--~~~~~i 281 (442)
...|.. .+...+|++|+||..|+++|+++|+||+||.|.++|++.. .|..+ +...+|
T Consensus 169 --~~~p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v 244 (423)
T 3mvd_K 169 --KRTPID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244 (423)
T ss_dssp --EEEEEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCE
T ss_pred --CceeeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccE
Confidence 234443 3556689999999999999999999999999999998753 33333 345689
Q ss_pred eEEEeCCCeEEEE-ECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccceee
Q 013470 282 SQAALGWNHVLVL-TGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWVRL 360 (442)
Q Consensus 282 ~~i~~G~~~~~~l-~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~~~ 360 (442)
++|++|..|++++ +++|+||+||.|.+||||.+..... ....|.++. ..+|++|+||.+|+++|+
T Consensus 245 ~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~---~~~~p~~~~---~~~v~~ia~G~~ht~alt-------- 310 (423)
T 3mvd_K 245 EAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKE---FALTPIKTE---LKDIRHIAGGQHHTVILT-------- 310 (423)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCS---EEEEEEEEC---CCSEEEEEECSSEEEEEE--------
T ss_pred EEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCc---eeeeeEEcC---CCCeEEEEcccCeEEEEe--------
Confidence 9999999999999 5999999999999999999544321 223344443 238999999999999999
Q ss_pred eEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCC-ccCcEEEecCccccCCCceEEEecCCCeEEEecCCc
Q 013470 361 FIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCD-QIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC 437 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~-~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l~~~~ 437 (442)
++|+||+||.|.+||||.++..+ ...|++|+.+.. +|.+|+||.+|+++|+++-
T Consensus 311 ------------------~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-----~v~~ia~G~~hs~alt~~G 365 (423)
T 3mvd_K 311 ------------------TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-----KIVSVGCGEVCSYAVTIDG 365 (423)
T ss_dssp ------------------TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-----CEEEEEEETTEEEEEETTS
T ss_pred ------------------CCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-----CEEEEEcCCCeEEEEcCCC
Confidence 99999999999999999998765 467888776543 7999999999999998763
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.7e-51 Score=386.22 Aligned_cols=275 Identities=27% Similarity=0.378 Sum_probs=226.7
Q ss_pred cEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCee
Q 013470 34 VKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDAL 113 (442)
Q Consensus 34 ~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~ 113 (442)
.+||+||+|...++.. .| + +...+|++|+||..|+++| + ||+||+||.|.+||||.+
T Consensus 2 ~~v~~WG~n~~~~~~~-------~p--~--~~~~~i~~ia~G~~h~~~l-~-----~G~v~~wG~n~~Gqlg~p------ 58 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEAT-------VP--A--EAQSGVDAIAGGYFHGLAL-K-----GGKVLGWGANLNGQLTMP------ 58 (282)
T ss_dssp CEEEEECSCCTTSTTC-------CC--G--GGSSSCCEEEECSSEEEEE-E-----TTEEEEEECCSSSTTSCC------
T ss_pred eEEEEeCCCCCcCccc-------CC--c--cccCCCcEEEeCCCeEEEE-E-----CCEEEEEeCCCCCCCCCC------
Confidence 4699999997555532 12 2 2234899999999999999 4 699999999999999952
Q ss_pred cceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEE
Q 013470 114 YPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVL 193 (442)
Q Consensus 114 ~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~l 193 (442)
.. .+ .+|++|+||.+|+++|+ ||+||+||.|.+||||. |..+. .+|++|+||.+|+++|
T Consensus 59 --~~--~~----~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al 117 (282)
T 3qhy_B 59 --AA--TQ----SGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYAL 117 (282)
T ss_dssp --GG--GG----SCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEE
T ss_pred --cc--CC----CCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEE
Confidence 21 12 35999999999999996 99999999999999985 33332 4799999999999999
Q ss_pred EeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCcc
Q 013470 194 LKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQ 273 (442)
Q Consensus 194 t~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~ 273 (442)
+ + |+||+||.|.++||+... ....+|++|+||..|+++|+ +|+||+||.|.++|++. |.
T Consensus 118 ~-~---G~v~~wG~n~~gqlg~~~--------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--p~ 176 (282)
T 3qhy_B 118 K-D---GKVIAWGDDSDGQTTVPA--------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--PA 176 (282)
T ss_dssp E-T---TEEEEEECCTTSTTSCCG--------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--CG
T ss_pred e-C---CeEEEecCCCCCcCCCCc--------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--ce
Confidence 8 4 999999999999998531 11246999999999999999 89999999999999874 33
Q ss_pred ccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeC
Q 013470 274 SLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTG 353 (442)
Q Consensus 274 ~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~ 353 (442)
.+ ..+|++|+||..|+++| ++|+||+||.|.+||||.+.. .+ .+|++|+||.+|+++++
T Consensus 177 ~~--~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~---------------~~--~~v~~i~~G~~h~~al~- 235 (282)
T 3qhy_B 177 EA--QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE---------------AL--SGVSAIASGEWYSLALK- 235 (282)
T ss_dssp GG--GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG---------------GG--SSCCEEEECSSCEEEEE-
T ss_pred ec--CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc---------------cC--CCceEEEcCCCEEEEEE-
Confidence 33 46899999999999999 899999999999999986421 11 26999999999999988
Q ss_pred cccceeeeEeccCCCCCccceeeeccCCcEEEEECCCCCcccCCCCCCccCcEEEecCccccCCCceEEEecCCCeEEEe
Q 013470 354 KFHWVRLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAI 433 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~i~~G~~~t~~l 433 (442)
+|+||+||.|.++|++.. . .|.+|+||..|+++|
T Consensus 236 --------------------------~g~v~~wG~n~~gq~~v~--------------~------~v~~iaaG~~h~~al 269 (282)
T 3qhy_B 236 --------------------------NGKVIAWGSSRTAPSSVQ--------------S------GVSSIEAGPNAAYAL 269 (282)
T ss_dssp --------------------------TTEEEEESTTCCCCGGGS--------------S------CEEEEEECSSCEEEE
T ss_pred --------------------------CCEEEEecCCCCccccCC--------------C------CcEEEEECcCeEEEE
Confidence 899999999999999741 1 689999999999999
Q ss_pred cCCccCC
Q 013470 434 SRHCLPS 440 (442)
Q Consensus 434 ~~~~~~~ 440 (442)
+++..+.
T Consensus 270 ~~~~~~~ 276 (282)
T 3qhy_B 270 KGGSGSG 276 (282)
T ss_dssp EC-----
T ss_pred ecCCCCC
Confidence 9987653
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.2e-45 Score=348.72 Aligned_cols=246 Identities=26% Similarity=0.322 Sum_probs=206.6
Q ss_pred CcceeecCCCccchhhhhcccccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCceeEEEeCCCcccCC
Q 013470 12 GKSALINNAKPKIEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGG 91 (442)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~~~~~dg 91 (442)
....+.....+...+ + +++||+||.|.+||||.+ .+ ...+|++|+||..|+++| + ||
T Consensus 25 ~i~~ia~G~~h~~~l----~-~G~v~~wG~n~~Gqlg~p--------~~----~~~~i~~ia~G~~hs~~l-~-----~G 81 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL----K-GGKVLGWGANLNGQLTMP--------AA----TQSGVDAIAAGNYHSLAL-K-----DG 81 (282)
T ss_dssp SCCEEEECSSEEEEE----E-TTEEEEEECCSSSTTSCC--------GG----GGSCCCEEEECSSEEEEE-E-----TT
T ss_pred CCcEEEeCCCeEEEE----E-CCEEEEEeCCCCCCCCCC--------cc----CCCCEEEEEeCCCEEEEE-E-----CC
Confidence 344555666666655 3 699999999999999952 21 234899999999999999 6 89
Q ss_pred eEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceE
Q 013470 92 KVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVK 171 (442)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~ 171 (442)
+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+||+||.|.++|||.+..
T Consensus 82 ~v~~wG~n~~Gqlg~--------P~~~~------~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~-------- 138 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV--------PAEAR------SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE-------- 138 (282)
T ss_dssp EEEEEECCTTSTTCC--------CGGGS------SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG--------
T ss_pred EEEEeeCCCCCCCCC--------CcccC------CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc--------
Confidence 999999999999995 33331 35999999999999999 99999999999999984211
Q ss_pred EeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEc
Q 013470 172 VSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251 (442)
Q Consensus 172 v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt 251 (442)
...+|++|+||.+|+++|++ |+||+||.|.++||+.. ..+ ..+|++|+||..|+++|
T Consensus 139 ----~~~~i~~i~~G~~~~~~l~~----G~v~~wG~n~~gqlg~p----------~~~----~~~v~~i~~G~~hs~al- 195 (282)
T 3qhy_B 139 ----AQSGVTALDGGVYTALAVKN----GGVIAWGDNYFGQTTVP----------AEA----QSGVDDVAGGIFHSLAL- 195 (282)
T ss_dssp ----GGSSEEEEEECSSEEEEEET----TEEEEEECCTTSTTSCC----------GGG----GSSEEEEEECSSEEEEE-
T ss_pred ----CCCCeEEEEcccCEEEEEEC----CEEEEecCCCCCCCCCc----------eec----CCCeEEEEecCCEEEEE-
Confidence 12579999999999999864 99999999999999843 111 24799999999999999
Q ss_pred CCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeec
Q 013470 252 AEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVS 331 (442)
Q Consensus 252 ~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~ 331 (442)
++|+||+||.|.++|++...+ ...+|++|+||..|+++|+ +|+||+||.|.++|++..
T Consensus 196 ~~G~v~~wG~n~~gqlg~p~~----~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~----------------- 253 (282)
T 3qhy_B 196 KDGKVIAWGDNRYKQTTVPTE----ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------------- 253 (282)
T ss_dssp ETTEEEEEECCTTSTTCCCGG----GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS-----------------
T ss_pred ECCeEEEEECCCCCCCCCCcc----cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC-----------------
Confidence 899999999999999985433 2457999999999999999 999999999999988751
Q ss_pred cCCCccEEEEeecCCeeEEEe
Q 013470 332 NLDGVKVIQIAAGAEHSAVVT 352 (442)
Q Consensus 332 ~~~~~~I~~I~~G~~~s~~l~ 352 (442)
..|++|+||..|+++|+
T Consensus 254 ----~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 254 ----SGVSSIEAGPNAAYALK 270 (282)
T ss_dssp ----SCEEEEEECSSCEEEEE
T ss_pred ----CCcEEEEECcCeEEEEe
Confidence 16999999999999999
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.75 E-value=0.46 Score=46.20 Aligned_cols=191 Identities=9% Similarity=0.002 Sum_probs=115.0
Q ss_pred CCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCC
Q 013470 66 LSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSG 145 (442)
Q Consensus 66 ~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g 145 (442)
...|..++......+.-.. ||.|..|-.... ..+..+..+...|..++......+.-..||
T Consensus 173 ~~~v~~l~~~~~~l~sg~~-----dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg 233 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSS-----DSTVRVWDVNTG--------------EMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 233 (435)
T ss_dssp SSCEEEEECCSSEEEEEET-----TSCEEEEESSSC--------------CEEEEECCCCSCEEEEECCTTEEEEEETTS
T ss_pred CCcEEEEEECCCEEEEEcC-----CCeEEEEECCCC--------------cEEEEEcCCCCcEEEEEEcCCEEEEeeCCC
Confidence 3477788875555555556 899999975431 112222223356888888777777778899
Q ss_pred CEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeec
Q 013470 146 CLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSL 225 (442)
Q Consensus 146 ~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~ 225 (442)
.|..|-..... ..............|..++....+.+.-.. +|.|..|-.... . .
T Consensus 234 ~i~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---dg~i~vwd~~~~----------~---~ 288 (435)
T 1p22_A 234 SIAVWDMASPT---------DITLRRVLVGHRAAVNVVDFDDKYIVSASG---DRTIKVWNTSTC----------E---F 288 (435)
T ss_dssp CEEEEECSSSS---------CCEEEEEECCCSSCEEEEEEETTEEEEEET---TSEEEEEETTTC----------C---E
T ss_pred cEEEEeCCCCC---------CceeeeEecCCCCcEEEEEeCCCEEEEEeC---CCeEEEEECCcC----------c---E
Confidence 99999543211 011111111123467777775556666666 899999943221 0 0
Q ss_pred CeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeC
Q 013470 226 PQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 226 p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~ 305 (442)
...+. .....|..++......+.-..+|.|++|-....... .........|..++....+.+.-..+|.|..|-.
T Consensus 289 ~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 289 VRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE----EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 11111 122357777777777777789999999975432111 1111234567888887777777788999999954
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.38 E-value=0.0082 Score=53.44 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=61.9
Q ss_pred CCeeEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeeccCCCccEEEEeecCCeeEEEeCcccce
Q 013470 279 LSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTGKFHWV 358 (442)
Q Consensus 279 ~~i~~i~~G~~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~I~~I~~G~~~s~~l~~~~~~~ 358 (442)
.+|.+|+....|.+++--+++|+.+|++.+||+-.+.... ....+.+|.++++-+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag------------------Pfla~~AG~~fTVTVn------ 364 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG------------------PYIQLAAGHNFTVTVN------ 364 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC------------------CEEEEEECSSEEEEEE------
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCcc------------------hHHhHhccCCeEEEEe------
Confidence 6888999999999999999999999999999998765432 5789999999999999
Q ss_pred eeeEeccCCCCCccceeeeccCCcEEEEECCCCCcc
Q 013470 359 RLFIISYTPFFPPFFINVIAENRAIMTWGWGEHGQL 394 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqL 394 (442)
.-+.+.-||+.-..-|
T Consensus 365 --------------------~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 365 --------------------TLNQVMFWGDSPDNSL 380 (400)
T ss_dssp --------------------TTCCEEEEECCTTSTT
T ss_pred --------------------ceeeEEEecCCCCcce
Confidence 9999999999764443
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.16 E-value=1.1 Score=43.63 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=65.5
Q ss_pred CceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEE
Q 013470 178 KNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLY 257 (442)
Q Consensus 178 ~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy 257 (442)
..|..++....+.+.-.. +|.|..|-..... ....+. .....+..+.......+.-..+|.|+
T Consensus 280 ~~v~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 280 NRVYSLQFDGIHVVSGSL---DTSIRVWDVETGN-------------CIHTLT-GHQSLTSGMELKDNILVSGNADSTVK 342 (445)
T ss_dssp SCEEEEEECSSEEEEEET---TSCEEEEETTTCC-------------EEEEEC-CCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred CceEEEEECCCEEEEEeC---CCeEEEEECCCCC-------------EEEEEc-CCcccEEEEEEeCCEEEEEeCCCeEE
Confidence 457777775555555555 7888888432210 001111 12235666666677777778899999
Q ss_pred EeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCC
Q 013470 258 TWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 258 ~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n 306 (442)
+|-.......... .........|..++....+.+.-..||.|..|-..
T Consensus 343 vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 343 IWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEETTTCCEEEEE-CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred EEECCCCcEEEEE-ccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 9975332111000 00001345688888877888888899999999643
No 16
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.91 Score=42.40 Aligned_cols=198 Identities=12% Similarity=0.017 Sum_probs=101.7
Q ss_pred CcEEEEEeCCceeEEE--eCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec----CceEEE
Q 013470 67 SSVSMLACGGAHVLAL--TSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG----WNHSGF 140 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~l--t~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G----~~~s~~ 140 (442)
..|..++......+++ .. ||.|+.|-... .....+..+..+...|..++.. ..+.+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEG------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CCEEEEEECSSSSEEEEEET-----TSCEEEEEEET------------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred ccEEEEEEcCCCCEEEEEEC-----CCcEEEEecCC------------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence 4666666554333222 34 78888886421 0123333333333568778764 455556
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC----ceEEEEeecCCCeeeeeCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR----HSLVLLKDCLGNQVYGFGSGKRGQLGVS 216 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~----h~~~lt~~~~~G~vy~wG~n~~gqlg~~ 216 (442)
-..||.|..|-.... ...+..........|..++...+ ..+.... +|.|..|-.......
T Consensus 75 ~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~--- 138 (379)
T 3jrp_A 75 CSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTT--- 138 (379)
T ss_dssp EETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCTTSCC---
T ss_pred eccCCEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC---CCcEEEEecCCCCce---
Confidence 678899999953221 00111111112346777776543 3444445 899999854321110
Q ss_pred CCCCceeecCeEeeccCCCcEEEEEecC---------------CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCe
Q 013470 217 KDRIRSVSLPQVTIGLHDIEIVGISANG---------------DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSF 281 (442)
Q Consensus 217 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~---------------~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i 281 (442)
.+..+ ......|..++... ...++-..+|.|++|-....................|
T Consensus 139 --------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 139 --------SPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp --------CEEEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred --------eeEEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence 11111 11223566665543 4555567899999996532211100000111134567
Q ss_pred eEEEeCC-----CeEEEEECCCcEEEEeCC
Q 013470 282 SQAALGW-----NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 282 ~~i~~G~-----~~~~~l~~~G~vy~~G~n 306 (442)
..++... ...+....+|.|..|-..
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 7777654 345556788999999643
No 17
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.02 E-value=0.97 Score=41.94 Aligned_cols=194 Identities=12% Similarity=-0.002 Sum_probs=100.9
Q ss_pred CCcEEEEEeCCc----eeE-EEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceE
Q 013470 66 LSSVSMLACGGA----HVL-ALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHS 138 (442)
Q Consensus 66 ~~~i~~I~~G~~----h~~-~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s 138 (442)
...|..|+.... ..+ .-.. ||.|..|-....++ .....+.. +...|..++... .+.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~-----dg~i~iw~~~~~~~---------~~~~~~~~---h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSW-----ANDVRCWEVQDSGQ---------TIPKAQQM---HTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEET-----TSEEEEEEECTTSC---------EEEEEEEE---CSSCEEEEEECTTSSEE
T ss_pred CCceEEEEEcCCCCCceEEEEECC-----CCcEEEEEcCCCCc---------eeEEEecc---ccCCEEEEEECcCCCEE
Confidence 358888887765 333 3344 89999997543221 11112221 114577776643 345
Q ss_pred EEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe--CCC-ceEEEEeecCCCeeeeeCCCCCCCCCC
Q 013470 139 GFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GMR-HSLVLLKDCLGNQVYGFGSGKRGQLGV 215 (442)
Q Consensus 139 ~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~--G~~-h~~~lt~~~~~G~vy~wG~n~~gqlg~ 215 (442)
+....||.|..|-.... ....+.. ....|..++. ..+ ..++.... +|.|+.|-.....
T Consensus 102 ~s~~~dg~v~iwd~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~---- 162 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSN------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSW--DKTLKFWDTRSSN---- 162 (368)
T ss_dssp EEEETTSEEEEEETTTT------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEET--TSEEEEECSSCSS----
T ss_pred EEEcCCCcEEEEEcCCC------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccC--CCcEEEEECCCCc----
Confidence 55577899999964321 1112222 2346777775 433 33333332 8999999532211
Q ss_pred CCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCe----E
Q 013470 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNH----V 291 (442)
Q Consensus 216 ~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~----~ 291 (442)
....+. . ...+..+.......++...++.+++|-.......-............+..+...... .
T Consensus 163 ---------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 163 ---------PMMVLQ-L-PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp ---------CSEEEE-C-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred ---------EEEEEe-c-CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 001111 1 124556666667777888899999997643221100000111112223333333332 6
Q ss_pred EEEECCCcEEEEeCC
Q 013470 292 LVLTGDGEVLMLGGS 306 (442)
Q Consensus 292 ~~l~~~G~vy~~G~n 306 (442)
++-..+|.|..|-..
T Consensus 232 ~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 232 ALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEETTSEEEEEESS
T ss_pred EEecCCCcEEEEecC
Confidence 667888988888654
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.72 E-value=0.66 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=16.3
Q ss_pred CCeEEEEECCCcEEEEeCCCCc
Q 013470 288 WNHVLVLTGDGEVLMLGGSHHG 309 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~n~~g 309 (442)
..|.+++..+|+||..|-...+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBC
T ss_pred ccCCeEECCCCCEEEECCcccC
Confidence 3677777779999999865443
No 19
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.58 E-value=1.8 Score=41.84 Aligned_cols=191 Identities=7% Similarity=-0.000 Sum_probs=115.5
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGC 146 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~ 146 (442)
..|..++......+.-.. ||.|..|-.... ..+..+..+...|..++......+.-..||.
T Consensus 134 ~~v~~~~~d~~~l~~g~~-----dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~ 194 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLR-----DNTIKIWDKNTL--------------ECKRILTGHTGSVLCLQYDERVIITGSSDST 194 (435)
T ss_dssp CCEEEEECCSSEEEEEES-----SSCEEEEESSSC--------------CEEEEECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred CcEEEEEECCCEEEEEeC-----CCeEEEEeCCCC--------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCe
Confidence 356677776666666677 899999964321 1222233333568888886666666688999
Q ss_pred EEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecC
Q 013470 147 LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLP 226 (442)
Q Consensus 147 vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p 226 (442)
|..|-.... .+..........|..++......+.-.. +|.|..|-...... . ..
T Consensus 195 i~vwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~s~s~---dg~i~vwd~~~~~~----------~-~~ 248 (435)
T 1p22_A 195 VRVWDVNTG------------EMLNTLIHHCEAVLHLRFNNGMMVTCSK---DRSIAVWDMASPTD----------I-TL 248 (435)
T ss_dssp EEEEESSSC------------CEEEEECCCCSCEEEEECCTTEEEEEET---TSCEEEEECSSSSC----------C-EE
T ss_pred EEEEECCCC------------cEEEEEcCCCCcEEEEEEcCCEEEEeeC---CCcEEEEeCCCCCC----------c-ee
Confidence 999964321 1111111123468888877666666666 89999994322110 0 01
Q ss_pred eEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCC
Q 013470 227 QVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 227 ~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n 306 (442)
..........|..++....+.+.-..+|.|++|-....... .........|..++......+.-..+|.|..|-..
T Consensus 249 ~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV----RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE----EEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 11111223467777777777777888999999975432111 01112345677777777777778889999999653
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.25 E-value=1.9 Score=39.95 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=81.1
Q ss_pred CcEEEEEeCCc------eeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC---ce
Q 013470 67 SSVSMLACGGA------HVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW---NH 137 (442)
Q Consensus 67 ~~i~~I~~G~~------h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~---~~ 137 (442)
..|..++.... ..+.-.. ||.|..|-.... ..+..+......|..++... ..
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGS-----RGIIRIINPITM--------------QCIKHYVGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEET-----TCEEEEECTTTC--------------CEEEEEESCCSCEEEEEECSSCTTE
T ss_pred CcEEEEEeccCCCCCCCEEEEecC-----CCEEEEEEchhc--------------eEeeeecCCCCcEEEEEECCCCCCE
Confidence 45666665433 3334445 899999964321 11122222224577777643 45
Q ss_pred EEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEe--ecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCC
Q 013470 138 SGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS--SFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQL 213 (442)
Q Consensus 138 s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~--~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gql 213 (442)
.+.-..||.|+.|-...... ...+. ......|..++...+ +.+.... +|.|+.|-......+
T Consensus 131 l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTL-----------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRINSKRMM 196 (366)
T ss_dssp EEEEETTSCEEEEETTTTEE-----------EEEECSTTSCSSCEEEEEECTTSSEEEEEET---TSCEEEEESCSHHHH
T ss_pred EEEEeCCCeEEEEEeecCeE-----------EEEecccccccCceeEEEECCCCCEEEEecC---CCCEEEEECCCCccc
Confidence 55556789999996432110 11110 112346777776543 3333344 889999854321000
Q ss_pred C-------CCCCC------CceeecCeE-eeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCC
Q 013470 214 G-------VSKDR------IRSVSLPQV-TIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGF 263 (442)
Q Consensus 214 g-------~~~~~------~~~~~~p~~-v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~ 263 (442)
. ..+.. ......|.. ........|..++......+.-..+|.|++|-...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 0 00000 000000100 01112335666655566777778899999997643
No 21
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.17 E-value=2 Score=45.22 Aligned_cols=197 Identities=12% Similarity=0.020 Sum_probs=101.5
Q ss_pred cEEEEEeCCce--eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec----CceEEEE
Q 013470 68 SVSMLACGGAH--VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG----WNHSGFV 141 (442)
Q Consensus 68 ~i~~I~~G~~h--~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G----~~~s~~l 141 (442)
.|..++..... .+.-.. ||.|..|-... .....+..+..+...|..|+.. ..+.+.-
T Consensus 11 ~V~~l~~s~dg~~latg~~-----dg~I~vwd~~~------------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS-----DKTIKIFEVEG------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp CEEEECCCSSSCCEEEEET-----TTEEEEEEEET------------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred eeEEEEECCCCCeEEEEEC-----CCcEEEEecCC------------CCCccceeccCCcCceEEEEecCCCCCCEEEEE
Confidence 55555544322 233335 89999995321 0122333333334568888764 3455566
Q ss_pred EeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC----ceEEEEeecCCCeeeeeCCCCCCCCCCCC
Q 013470 142 SDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR----HSLVLLKDCLGNQVYGFGSGKRGQLGVSK 217 (442)
Q Consensus 142 t~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~----h~~~lt~~~~~G~vy~wG~n~~gqlg~~~ 217 (442)
..||.|+.|-.... ...+..........|..++...+ ..+.-+. +|.|+.|-.......
T Consensus 74 s~Dg~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~~---- 136 (753)
T 3jro_A 74 SYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGTT---- 136 (753)
T ss_dssp ETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSCC----
T ss_pred eCCCeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCCc----
Confidence 78999999953220 00111111112346777776543 3444445 899999954321110
Q ss_pred CCCceeecCeEeeccCCCcEEEEEecC---------------CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCee
Q 013470 218 DRIRSVSLPQVTIGLHDIEIVGISANG---------------DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFS 282 (442)
Q Consensus 218 ~~~~~~~~p~~v~~~~~~~i~~i~~g~---------------~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~ 282 (442)
....+. .....|..++... ...+.-..+|.|+.|-....................|.
T Consensus 137 -------~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 137 -------SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp -------CCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred -------ceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 111111 1223466665543 45555677999999965332111000001112345677
Q ss_pred EEEeCC-----CeEEEEECCCcEEEEeCC
Q 013470 283 QAALGW-----NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 283 ~i~~G~-----~~~~~l~~~G~vy~~G~n 306 (442)
.++... ...+.-..+|.|+.|-..
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 777653 345556788999999644
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.89 E-value=3 Score=43.64 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=70.8
Q ss_pred CceEEEEEe-CCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEE----eCCCceEEEEeecCCCeeeeeCCCC
Q 013470 135 WNHSGFVSD-SGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIA----CGMRHSLVLLKDCLGNQVYGFGSGK 209 (442)
Q Consensus 135 ~~~s~~lt~-~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~----~G~~h~~~lt~~~~~G~vy~wG~n~ 209 (442)
..|++++.. +|+||++|-.....--..+ ..+-.+.......+. .-..|++++.. +++||.+|-..
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~d-------v~~yd~~t~~W~~~~~~p~~R~~h~~~~~~---~~~iyv~GG~~ 510 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSD-------NWIFDMKTREWSMIKSLSHTRFRHSACSLP---DGNVLILGGVT 510 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCC-------CEEEETTTTEEEECCCCSBCCBSCEEEECT---TSCEEEECCBC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcccc-------EEEEeCCCCcEEECCCCCCCcccceEEEEc---CCEEEEECCCC
Confidence 357777775 8999999943211100000 111111111222221 23568888766 69999998532
Q ss_pred CCCCCCCCCCCceeecCeEeeccCCCcEEEEEe-------cCCeE-EEEcCC-CcEEEeeCCCCCCCCCCCccc-c-CCC
Q 013470 210 RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISA-------NGDRS-AALSAE-GHLYTWGRGFNSTSDVNCPQS-L-PSS 278 (442)
Q Consensus 210 ~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~-------g~~~s-~~lt~~-G~vy~wG~~~~~~~~~~~p~~-i-~~~ 278 (442)
... ...+.+........+.. -..|+ +++..+ ++||++|-............. . +..
T Consensus 511 ~~~-------------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 511 EGP-------------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp SSC-------------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CCC-------------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 211 11122222223333331 22355 555655 899999853221100000000 0 111
Q ss_pred CC------eeEEE-----eCCCeEEEEECCCcEEEEeC
Q 013470 279 LS------FSQAA-----LGWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 279 ~~------i~~i~-----~G~~~~~~l~~~G~vy~~G~ 305 (442)
.. ...+. .-..|+++...+++||.+|-
T Consensus 578 ~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 578 ENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp TCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred CccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 12 33443 23577888777799999984
No 23
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.48 E-value=0.051 Score=48.40 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=58.6
Q ss_pred CceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEE
Q 013470 178 KNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLY 257 (442)
Q Consensus 178 ~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy 257 (442)
.+|..|+--..|.+++-- +++|+.||++++||+-.... .-+..++.+|.++++-+..-..+-
T Consensus 309 n~i~~VsG~y~H~vvi~g---d~el~sFG~~sNGQ~~ip~t---------------agPfla~~AG~~fTVTVn~~nyv~ 370 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYG---DGQIAFFGNNDNGQCDVDDH---------------AGPYIQLAAGHNFTVTVNTLNQVM 370 (400)
T ss_dssp SCCCCCBCSSSEEEC-CT---TTCCCEEECCTTSTTCCCGG---------------GCCEEEEEECSSEEEEEETTCCEE
T ss_pred CccccccccccceEEEec---CceeEEeccCCCCceecCCC---------------cchHHhHhccCCeEEEEeceeeEE
Confidence 578899999999999998 89999999999999965421 125789999999999999999999
Q ss_pred EeeCCCCC
Q 013470 258 TWGRGFNS 265 (442)
Q Consensus 258 ~wG~~~~~ 265 (442)
.||.....
T Consensus 371 FWGDSPDN 378 (400)
T 4gbf_A 371 FWGDSPDN 378 (400)
T ss_dssp EEECCTTS
T ss_pred EecCCCCc
Confidence 99985443
No 24
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.32 E-value=3.8 Score=39.04 Aligned_cols=189 Identities=11% Similarity=0.052 Sum_probs=97.7
Q ss_pred CCCcEEEEEeCCc--eeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEE
Q 013470 65 SLSSVSMLACGGA--HVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVS 142 (442)
Q Consensus 65 ~~~~i~~I~~G~~--h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt 142 (442)
....|..|+.... +.++-.. ||.|..|-.... ..+..+..+...|..++......+.-.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~ 193 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLG-----NGLVDIYDVESQ--------------TKLRTMAGHQARVGCLSWNRHVLSSGS 193 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEET-----TSCEEEEETTTC--------------CEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECC-----CCeEEEEECcCC--------------eEEEEecCCCCceEEEEECCCEEEEEc
Confidence 3456777765433 3334445 888888864321 122222233356888888777777778
Q ss_pred eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc--eEEEEeecCCCeeeeeCCCCCCCCCCCCCCC
Q 013470 143 DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH--SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI 220 (442)
Q Consensus 143 ~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h--~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~ 220 (442)
.+|.|+.|-.... ..+..........|..++...+. .+.-.. +|.|+.|-....
T Consensus 194 ~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~---------- 249 (401)
T 4aez_A 194 RSGAIHHHDVRIA-----------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGN---DNVVQIWDARSS---------- 249 (401)
T ss_dssp TTSEEEEEETTSS-----------SCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTCS----------
T ss_pred CCCCEEEEecccC-----------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeC---CCeEEEccCCCC----------
Confidence 8999999964321 11111111123467777765442 333344 799999954320
Q ss_pred ceeecCeEeeccCCCcEEEEEecC--CeEEEEc---CCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCC--eEEE
Q 013470 221 RSVSLPQVTIGLHDIEIVGISANG--DRSAALS---AEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWN--HVLV 293 (442)
Q Consensus 221 ~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt---~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~--~~~~ 293 (442)
.+..........|..++... ...++.. .+|.|+.|-...... ...+.....|..++.... ..++
T Consensus 250 ----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 250 ----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----VNTVDAGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp ----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEECSSSSEEEE
T ss_pred ----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----EEEEeCCCcEEEEEECCCCCeEEE
Confidence 01111111123455555443 2344433 589999996542211 112223456666665432 2233
Q ss_pred EE--CCCcEEEEeC
Q 013470 294 LT--GDGEVLMLGG 305 (442)
Q Consensus 294 l~--~~G~vy~~G~ 305 (442)
.. .+|.|+.|-.
T Consensus 321 ~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 321 THGFPDNNLSIWSY 334 (401)
T ss_dssp EECTTTCEEEEEEE
T ss_pred EeecCCCcEEEEec
Confidence 22 5788888853
No 25
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.30 E-value=3.2 Score=38.17 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=97.5
Q ss_pred CCcEEEEEeCCc----e-eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEe--------
Q 013470 66 LSSVSMLACGGA----H-VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS-------- 132 (442)
Q Consensus 66 ~~~i~~I~~G~~----h-~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs-------- 132 (442)
...|..++.... . .+.-.. |+.|..|-.....+ .+..+..+...|..+.
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~s 126 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDF-----GGNLHIWNLEAPEM-------------PVYSVKGHKEIINAIDGIGGLGIG 126 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEET-----TSCEEEECTTSCSS-------------CSEEECCCSSCEEEEEEESGGGCC
T ss_pred cCcEEEEEEcCCCCCCceEEEecC-----CCeEEEEeCCCCCc-------------cEEEEEecccceEEEeeccccccC
Confidence 357777776653 3 333444 88999996543210 1111122224466663
Q ss_pred ecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecC---CCceEEEEe-----CCCceEEEEeecCCCeeee
Q 013470 133 AGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV---NKNVHQIAC-----GMRHSLVLLKDCLGNQVYG 204 (442)
Q Consensus 133 ~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~---~~~I~~I~~-----G~~h~~~lt~~~~~G~vy~ 204 (442)
....+.+.-..||.|+.|-..... .....+.... ...+..++. .....++.... +|.|+.
T Consensus 127 ~~~~~l~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--d~~i~i 194 (357)
T 3i2n_A 127 EGAPEIVTGSRDGTVKVWDPRQKD----------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD--NGDIKL 194 (357)
T ss_dssp -CCCEEEEEETTSCEEEECTTSCS----------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET--TSEEEE
T ss_pred CCccEEEEEeCCCeEEEEeCCCCC----------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc--CCeEEE
Confidence 223355555678999999643311 0111111111 225666652 22233333332 789999
Q ss_pred eCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC-----CeEEEEcCCCcEEEeeCCCCCCCCCCCccc-cCCC
Q 013470 205 FGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG-----DRSAALSAEGHLYTWGRGFNSTSDVNCPQS-LPSS 278 (442)
Q Consensus 205 wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~-i~~~ 278 (442)
|-.... .. ..... ....|..++... ...++-..+|.|++|............... ....
T Consensus 195 ~d~~~~----------~~----~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 259 (357)
T 3i2n_A 195 FDLRNM----------AL----RWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK 259 (357)
T ss_dssp EETTTT----------EE----EEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS
T ss_pred EECccC----------ce----eeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc
Confidence 853211 00 11111 123566666653 455556788999999654322211110000 1235
Q ss_pred CCeeEEEeCCC---eEEEEECCCcEEEEeCC
Q 013470 279 LSFSQAALGWN---HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 279 ~~i~~i~~G~~---~~~~l~~~G~vy~~G~n 306 (442)
..|..++.... ..+.-..+|.|+.|-..
T Consensus 260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 56777776554 34455788999998643
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.90 E-value=4.9 Score=38.78 Aligned_cols=187 Identities=11% Similarity=-0.017 Sum_probs=111.9
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeCCC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGC 146 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~g~ 146 (442)
..|..++......+.-.. |+.|..|-.... ..+..+..+...|..++......+.-..||.
T Consensus 160 ~~v~~~~~~~~~l~s~~~-----dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~ 220 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGST-----DRTLKVWNAETG--------------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220 (445)
T ss_dssp SCEEEEEEETTEEEEEET-----TSCEEEEETTTT--------------EEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred CCEEEEEecCCEEEEEeC-----CCeEEEEECCcC--------------cEEEEECCCCCcEEEEEecCCEEEEEeCCCE
Confidence 467777766665566666 899999964321 1222223333568888877777777788999
Q ss_pred EEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecC
Q 013470 147 LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLP 226 (442)
Q Consensus 147 vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p 226 (442)
|+.|-.... .+..........|..++......+.-.. +|.|+.|-.... . ..
T Consensus 221 i~~wd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~iwd~~~~----------~---~~ 272 (445)
T 2ovr_B 221 LRVWDIETG------------QCLHVLMGHVAAVRCVQYDGRRVVSGAY---DFMVKVWDPETE----------T---CL 272 (445)
T ss_dssp EEEEESSSC------------CEEEEEECCSSCEEEEEECSSCEEEEET---TSCEEEEEGGGT----------E---EE
T ss_pred EEEEECCCC------------cEEEEEcCCcccEEEEEECCCEEEEEcC---CCEEEEEECCCC----------c---Ee
Confidence 999954321 1111111123457777775555666666 899998842110 0 01
Q ss_pred eEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeC
Q 013470 227 QVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 227 ~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~ 305 (442)
..+. .....|..+.....+.+.-..+|.|++|-....... .........+..+.......+.-..+|.|..|-.
T Consensus 273 ~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 273 HTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI----HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp EEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE----EEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE----EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 1111 123467777776677777788999999975432111 1111233456677777777777888999999964
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.26 E-value=4.7 Score=36.60 Aligned_cols=189 Identities=7% Similarity=-0.099 Sum_probs=97.8
Q ss_pred CCcEEEEEeCCce--eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec--CceEEEE
Q 013470 66 LSSVSMLACGGAH--VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG--WNHSGFV 141 (442)
Q Consensus 66 ~~~i~~I~~G~~h--~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G--~~~s~~l 141 (442)
...|..++..... .+.-.. |+.|+.|-.... .+.....+......|..++.. ..+.+.-
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGE-----ASTLSIWDLAAP------------TPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEES-----SSEEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcC-----CCcEEEEECCCC------------CcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 3567777765443 333345 899999965321 111122222222346666554 3455556
Q ss_pred EeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCCCCC
Q 013470 142 SDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDR 219 (442)
Q Consensus 142 t~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~ 219 (442)
..+|.|+.|-.... .+..........|..++...+ ..+.... +|.|+.|-....
T Consensus 160 ~~dg~v~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~--------- 215 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDISNDGTKLWTGGL---DNTVRSWDLREG--------- 215 (337)
T ss_dssp ETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTT---------
T ss_pred eCCCcEEEEeCCCC------------ceeeeeecccCceEEEEECCCCCEEEEEec---CCcEEEEECCCC---------
Confidence 67899999964321 111111112345777776543 3333344 899999943221
Q ss_pred CceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEEE
Q 013470 220 IRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLT 295 (442)
Q Consensus 220 ~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~ 295 (442)
.. ..... ....+..++... ...++-..+|.|+.|-...... .........|..++.. ..+.+...
T Consensus 216 -~~---~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 216 -RQ---LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp -EE---EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -ce---Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEec
Confidence 00 00111 122455555433 3445556788999996543211 1112234567777665 34556667
Q ss_pred CCCcEEEEeCC
Q 013470 296 GDGEVLMLGGS 306 (442)
Q Consensus 296 ~~G~vy~~G~n 306 (442)
.+|.|+.|-..
T Consensus 285 ~dg~i~~~~~~ 295 (337)
T 1gxr_A 285 KDNLLNAWRTP 295 (337)
T ss_dssp TTSEEEEEETT
T ss_pred CCCcEEEEECC
Confidence 78889998643
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.15 E-value=5.2 Score=36.80 Aligned_cols=220 Identities=10% Similarity=0.030 Sum_probs=101.7
Q ss_pred CCcEEEEEeCC---ceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEE
Q 013470 66 LSSVSMLACGG---AHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGF 140 (442)
Q Consensus 66 ~~~i~~I~~G~---~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~ 140 (442)
...|..++... ...+.-.. |+.|+.|-..... ....+..+......|..++... .+.+.
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSK-----DHALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeC-----CCeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEE
Confidence 35788887653 33444455 8999999753210 1111111122235677777643 34555
Q ss_pred EEeCCCEEEeCCCCCcccC-------CC-C-CCCc------ccc-eEEeecCCCceEEEEeCCCceEEEEeecCCCeeee
Q 013470 141 VSDSGCLFTCGDGTFGQLG-------HG-D-YRSH------SSP-VKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYG 204 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG-------~~-~-~~~~------~~p-~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~ 204 (442)
...||.|+.|-......+. .. . .... ..| ..........|..++......+.-.. +|.|..
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---d~~i~~ 255 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSC---ENAIVC 255 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECS---SSEEEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEec---CCEEEE
Confidence 5678999999654321110 00 0 0000 000 00001122456666655455555555 899999
Q ss_pred eCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEec----CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCC---
Q 013470 205 FGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN----GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPS--- 277 (442)
Q Consensus 205 wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g----~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~--- 277 (442)
|-.....+.............+..........|..++.. ..+.++-..+|.|++|-......... ....+..
T Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~ 334 (366)
T 3k26_A 256 WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA-KCTTLTHHKC 334 (366)
T ss_dssp EEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC-EEEEECCTTC
T ss_pred EeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc-cceEEccccc
Confidence 854332221000000000000000001111123233222 44555567889999997543221110 0111221
Q ss_pred CCCeeEEEeC--CCeEEEEECCCcEEEEeC
Q 013470 278 SLSFSQAALG--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 278 ~~~i~~i~~G--~~~~~~l~~~G~vy~~G~ 305 (442)
...|..++.. ..+.+.-..||.|+.|--
T Consensus 335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 335 GAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 4567777664 345556678888888853
No 29
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.10 E-value=8.4 Score=40.17 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=11.8
Q ss_pred CeEEEEECCCcEEEEeCC
Q 013470 289 NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 289 ~~~~~l~~~G~vy~~G~n 306 (442)
.|+++...+|+||.+|-.
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 588887778899999853
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.92 E-value=5.2 Score=36.24 Aligned_cols=227 Identities=9% Similarity=-0.049 Sum_probs=109.9
Q ss_pred cccEEEEecCCCCCCCCCCCCCCccCCeEEecCCCCcEEEEEeCCcee-EEEeCCCcccCCeEEEEeCCCCCCCCCCCCc
Q 013470 32 QVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHV-LALTSPSSVIGGKVFSWGRGSSGQLGHGEMV 110 (442)
Q Consensus 32 ~~~~v~~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~-~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~ 110 (442)
.++++++.+......+........ ...........|..++...... ++... |+.+..|-........
T Consensus 19 ~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~~~~~----- 86 (337)
T 1gxr_A 19 ADGQMQPVPFPPDALIGPGIPRHA--RQINTLNHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISHPGNKS----- 86 (337)
T ss_dssp SSSCEEECCCCTTSSSSTTCCSEE--EEEEEECCSSCCCEEEECSSSSEEEEEC-----BSEEEEEETTSTTCCS-----
T ss_pred CCCCEEEeecCCCcEeccccCCcc--ccceeccCCCceEEEEEecCCcEEEEcC-----CCeEEEEECCCCCcee-----
Confidence 456777777654443332211111 1111223445777777655444 44444 8899999754322110
Q ss_pred CeecceEeeecCCCcceEEEEeecC--ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC
Q 013470 111 DALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR 188 (442)
Q Consensus 111 ~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~ 188 (442)
....+.. ......|..++... ...++-..+|.|+.|-.... ..............|..++...+
T Consensus 87 ---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 87 ---PVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP----------TPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp ---CSEEEEC-SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEEEEECTT
T ss_pred ---eeecccc-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----------CcceeeecccCCCceEEEEECCC
Confidence 0111110 01123466665543 34445567899999954321 10111111112345777765433
Q ss_pred --ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCC
Q 013470 189 --HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFN 264 (442)
Q Consensus 189 --h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~ 264 (442)
+.+.-.. +|.|+.|-.... . ....+. .....|..++... ...+.-..+|.|+.|-....
T Consensus 153 ~~~l~~~~~---dg~v~~~d~~~~----------~---~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 153 SKVCFSCCS---DGNIAVWDLHNQ----------T---LVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp SSEEEEEET---TSCEEEEETTTT----------E---EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEeC---CCcEEEEeCCCC----------c---eeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 3333344 789999843211 0 011111 1233566666643 34555568999999965332
Q ss_pred CCCCCCCccccCCCCCeeEEEeC--CCeEEEEECCCcEEEEeCC
Q 013470 265 STSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 265 ~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~n 306 (442)
.. ...+.....+..++.. ....++-..+|.|+.|-..
T Consensus 216 ~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 216 RQ-----LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EE-----EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ce-----EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 11 1112234455555543 3445555677888888543
No 31
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.53 E-value=8.4 Score=35.51 Aligned_cols=150 Identities=9% Similarity=-0.012 Sum_probs=78.9
Q ss_pred ceEEEEeecCc--eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeec--CCCceEEEEeC----CCceEEEEeec
Q 013470 126 YTITHISAGWN--HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSF--VNKNVHQIACG----MRHSLVLLKDC 197 (442)
Q Consensus 126 ~~i~~vs~G~~--~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~I~~I~~G----~~h~~~lt~~~ 197 (442)
..|..++.... +.+.-..||.|+.|-... .....+..+ ....|..++.. ....+.-..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-- 77 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-- 77 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEET------------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCC------------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc--
Confidence 45767665543 333345689999995321 011112111 22467777764 233444444
Q ss_pred CCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC----CeEEEEcCCCcEEEeeCCCCCCCCCCCcc
Q 013470 198 LGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG----DRSAALSAEGHLYTWGRGFNSTSDVNCPQ 273 (442)
Q Consensus 198 ~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~----~~s~~lt~~G~vy~wG~~~~~~~~~~~p~ 273 (442)
||.|..|-.... ...+..........|..++... ...+.-..+|.|++|-....... .+.
T Consensus 78 -dg~v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~ 141 (379)
T 3jrp_A 78 -DGKVLIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPI 141 (379)
T ss_dssp -TSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---CEE
T ss_pred -CCEEEEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---eeE
Confidence 899999843210 0011111112234677776654 35666678999999976433221 111
Q ss_pred cc-CCCCCeeEEEeC---------------CCeEEEEECCCcEEEEeC
Q 013470 274 SL-PSSLSFSQAALG---------------WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 274 ~i-~~~~~i~~i~~G---------------~~~~~~l~~~G~vy~~G~ 305 (442)
.+ .....|..++.. ....++-..+|.|+.|-.
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 11 234456666654 345566678899999843
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.82 E-value=8.6 Score=34.34 Aligned_cols=187 Identities=11% Similarity=0.041 Sum_probs=100.3
Q ss_pred CCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEee---cCceEEEEE
Q 013470 66 LSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISA---GWNHSGFVS 142 (442)
Q Consensus 66 ~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~---G~~~s~~lt 142 (442)
...|..++......+.-.. |+.+..|-.. ..+..+......+..+.. .....+...
T Consensus 104 ~~~i~~~~~~~~~l~~~~~-----d~~i~~~d~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSW-----DKTAKVWKEG----------------SLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp SSCEEEEEEETTEEEEEET-----TSEEEEEETT----------------EEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred ccCEEEEEecCCEEEEEeC-----CCCEEEEcCC----------------cEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 3577788876666666666 9999999511 111111111134655554 455666667
Q ss_pred eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCce
Q 013470 143 DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRS 222 (442)
Q Consensus 143 ~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~ 222 (442)
.+|.|+.|-.. .....+.......|..++...+..++.... +|.|+.|-.....
T Consensus 163 ~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--dg~i~i~d~~~~~----------- 216 (313)
T 3odt_A 163 ADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSN--DGLIKLVDMHTGD----------- 216 (313)
T ss_dssp TTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEET--TSEEEEEETTTCC-----------
T ss_pred CCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccC--CCeEEEEECCchh-----------
Confidence 88999999411 011111111234566666543333333332 8899998542210
Q ss_pred eecCeEeeccCCCcEEEEEecCC-eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC-CeEEEEECCCcE
Q 013470 223 VSLPQVTIGLHDIEIVGISANGD-RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW-NHVLVLTGDGEV 300 (442)
Q Consensus 223 ~~~p~~v~~~~~~~i~~i~~g~~-~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~-~~~~~l~~~G~v 300 (442)
....+. .....|..++.... ..++-..+|.|++|-...... ..........|..++... ...++-..+|.|
T Consensus 217 --~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i 289 (313)
T 3odt_A 217 --VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL----KQVITLPAISIWSVDCMSNGDIIVGSSDNLV 289 (313)
T ss_dssp --EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE----EEEEECSSSCEEEEEECTTSCEEEEETTSCE
T ss_pred --hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce----eEEEeccCceEEEEEEccCCCEEEEeCCCcE
Confidence 001111 12345777766544 556667899999996432211 111112334677776543 246667888999
Q ss_pred EEEeCC
Q 013470 301 LMLGGS 306 (442)
Q Consensus 301 y~~G~n 306 (442)
+.|-..
T Consensus 290 ~iw~~~ 295 (313)
T 3odt_A 290 RIFSQE 295 (313)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 999654
No 33
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.38 E-value=12 Score=35.35 Aligned_cols=185 Identities=9% Similarity=0.016 Sum_probs=98.5
Q ss_pred EEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEEeCCCEE
Q 013470 71 MLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDSGCLF 148 (442)
Q Consensus 71 ~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~g~vy 148 (442)
.++-...+.++... |+.|+.|-..... ....+..... ..|..|+... .+.++-..+|.|.
T Consensus 98 ~~~~s~~~l~~~~~-----d~~v~lw~~~~~~-----------~~~~~~~~~~--~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 98 LLDWSNLNVVAVAL-----ERNVYVWNADSGS-----------VSALAETDES--TYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp CEEECTTSEEEEEE-----TTEEEEEETTTCC-----------EEEEEECCTT--CCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEeecCCCEEEEEC-----CCeEEEeeCCCCc-----------EeEeeecCCC--CCEEEEEECCCCCEEEEECCCCeEE
Confidence 35555667777778 9999999764311 1112222112 3466666543 4555556789999
Q ss_pred EeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeE
Q 013470 149 TCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQV 228 (442)
Q Consensus 149 ~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~ 228 (442)
.|-..... ....+. .....|..++......+.-.. +|.|+.|-...... ....
T Consensus 160 iwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~------------~~~~ 212 (401)
T 4aez_A 160 IYDVESQT-----------KLRTMA-GHQARVGCLSWNRHVLSSGSR---SGAIHHHDVRIANH------------QIGT 212 (401)
T ss_dssp EEETTTCC-----------EEEEEC-CCSSCEEEEEEETTEEEEEET---TSEEEEEETTSSSC------------EEEE
T ss_pred EEECcCCe-----------EEEEec-CCCCceEEEEECCCEEEEEcC---CCCEEEEecccCcc------------eeeE
Confidence 99643211 111111 123467778775555555555 89999995431110 0111
Q ss_pred eeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC--CeEEEEE---CCCcEE
Q 013470 229 TIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW--NHVLVLT---GDGEVL 301 (442)
Q Consensus 229 v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~--~~~~~l~---~~G~vy 301 (442)
+. .....|..++... .+.+.-..+|.|++|....... ..........|..++... .+.++.. .+|.|+
T Consensus 213 ~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 213 LQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp EE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred Ec-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 11 1233566666543 3455556789999997543111 001112344566666543 3344433 488888
Q ss_pred EEeC
Q 013470 302 MLGG 305 (442)
Q Consensus 302 ~~G~ 305 (442)
.|-.
T Consensus 288 i~d~ 291 (401)
T 4aez_A 288 FWNA 291 (401)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8854
No 34
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=90.12 E-value=19 Score=37.67 Aligned_cols=151 Identities=8% Similarity=-0.052 Sum_probs=78.8
Q ss_pred ceEEEEeecCc--eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeec--CCCceEEEEeCC----CceEEEEeec
Q 013470 126 YTITHISAGWN--HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSF--VNKNVHQIACGM----RHSLVLLKDC 197 (442)
Q Consensus 126 ~~i~~vs~G~~--~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~I~~I~~G~----~h~~~lt~~~ 197 (442)
..|..++.... +.+.-..||.|.+|-... .....+..+ ....|..++... ...+.-..
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~------------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~-- 75 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG------------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-- 75 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEET------------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET--
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCC------------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeC--
Confidence 45666665433 344445789999994221 011111111 224687887642 23334444
Q ss_pred CCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC----CeEEEEcCCCcEEEeeCCCCCCCCCCCcc
Q 013470 198 LGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG----DRSAALSAEGHLYTWGRGFNSTSDVNCPQ 273 (442)
Q Consensus 198 ~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~----~~s~~lt~~G~vy~wG~~~~~~~~~~~p~ 273 (442)
||.|+.|-... . ...+..........|..++... ...+.-..+|.|++|-.......... .
T Consensus 76 -Dg~I~vwd~~~-----------~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~--~ 140 (753)
T 3jro_A 76 -DGKVLIWKEEN-----------G-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--I 140 (753)
T ss_dssp -TSCEEEEEEET-----------T-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE--E
T ss_pred -CCeEEEEECCC-----------C-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee--E
Confidence 89999994221 0 0011111112234677776653 35666678999999976443221111 1
Q ss_pred ccCCCCCeeEEEeCC---------------CeEEEEECCCcEEEEeC
Q 013470 274 SLPSSLSFSQAALGW---------------NHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 274 ~i~~~~~i~~i~~G~---------------~~~~~l~~~G~vy~~G~ 305 (442)
.......|..++... ...+.-..+|.|+.|-.
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~ 187 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEec
Confidence 112344566666543 45556677899988853
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=89.80 E-value=13 Score=34.71 Aligned_cols=191 Identities=15% Similarity=0.078 Sum_probs=92.7
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEEeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~ 144 (442)
..|..++......++.... ||.|..|-...... ...... .+..+...|..|+... .+.+.-..|
T Consensus 83 ~~v~~~~~s~d~~l~~~s~----dg~v~lWd~~~~~~--------~~~~~~--~~~~H~~~V~~v~~spdg~~l~sgs~d 148 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASD----SGAVELWELDENET--------LIVSKF--CKYEHDDIVSTVSVLSSGTQAVSGSKD 148 (344)
T ss_dssp SCEEEEEEETTTEEEEEET----TSEEEEEEECTTSS--------CEEEEE--EEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEEeCCCeEEEEEC----CCEEEEEeccCCCc--------eeEeec--cccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 3577777544443433332 89999996533211 111111 1111224577776544 344444678
Q ss_pred CCEEEeCCCCCcccCCCCCCCcccceEEeecC--CCceEEEEeCCCc-eEE--EEeecCCCeeeeeCCCCCCCCCCCCCC
Q 013470 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV--NKNVHQIACGMRH-SLV--LLKDCLGNQVYGFGSGKRGQLGVSKDR 219 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~I~~I~~G~~h-~~~--lt~~~~~G~vy~wG~n~~gqlg~~~~~ 219 (442)
|.|..|-... ...+..+. ...|..++...+. .++ -.. ||.|..|-.... +.
T Consensus 149 ~~i~iwd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~-~~------ 204 (344)
T 4gqb_B 149 ICIKVWDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE---DNRILLWDTRCP-KP------ 204 (344)
T ss_dssp SCEEEEETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEET---TSCEEEEETTSS-SC------
T ss_pred CeEEEEECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecc---cccccccccccc-ce------
Confidence 8999995332 11222221 2457777765432 233 334 899999833211 00
Q ss_pred CceeecCeEeeccCCCcEEEEEecC--CeEE-EEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC---CeEEE
Q 013470 220 IRSVSLPQVTIGLHDIEIVGISANG--DRSA-ALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW---NHVLV 293 (442)
Q Consensus 220 ~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~-~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~---~~~~~ 293 (442)
.. ..........+..++... ...+ .-..+|.|++|-......+ .........|..++... .+.+.
T Consensus 205 ---~~--~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 205 ---AS--QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ---EE--ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCEEEEEECSSSSCCEEE
T ss_pred ---ee--eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCEEEEEEccCCCeEEEE
Confidence 00 000011122355555432 2233 3467899999965322111 11112345677777643 33444
Q ss_pred EECCCcEEEEe
Q 013470 294 LTGDGEVLMLG 304 (442)
Q Consensus 294 l~~~G~vy~~G 304 (442)
-..||.|+.|-
T Consensus 276 gs~D~~i~vwd 286 (344)
T 4gqb_B 276 LSEDCSLAVLD 286 (344)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCeEEEEE
Confidence 67899999994
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.74 E-value=12 Score=34.19 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=77.5
Q ss_pred ceEEEEeecCce-EEEEEe-----CCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC----ceEEEEe
Q 013470 126 YTITHISAGWNH-SGFVSD-----SGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR----HSLVLLK 195 (442)
Q Consensus 126 ~~i~~vs~G~~~-s~~lt~-----~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~----h~~~lt~ 195 (442)
..|..|+..... .++.+. ||.|+.|-.... ...+.... .....|..++...+ ..++...
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~----------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG----------DLKLLREI-EKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS----------SEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC----------cccceeee-cccCcEEEEEEcCCCCCCceEEEec
Confidence 457777766533 233333 788999953321 11111111 12346888887654 3333333
Q ss_pred ecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEe--------cCCeEEEEcCCCcEEEeeCCCCCC-
Q 013470 196 DCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISA--------NGDRSAALSAEGHLYTWGRGFNST- 266 (442)
Q Consensus 196 ~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~--------g~~~s~~lt~~G~vy~wG~~~~~~- 266 (442)
. +|.|..|-.....+ +..........|..+.. .....+.-..+|.|++|-......
T Consensus 88 ~--dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 88 F--GGNLHIWNLEAPEM-------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp T--TSCEEEECTTSCSS-------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred C--CCeEEEEeCCCCCc-------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 2 89999995432210 11111112234655532 233555557889999996543321
Q ss_pred CCCCCccccCCCCCeeEEE------eCCCeEEEEECCCcEEEEeCC
Q 013470 267 SDVNCPQSLPSSLSFSQAA------LGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 267 ~~~~~p~~i~~~~~i~~i~------~G~~~~~~l~~~G~vy~~G~n 306 (442)
.....+..-.....+..++ ....+.++-..+|.|+.|-..
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 1111110111133566665 334555566778999999653
No 37
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=88.97 E-value=13 Score=33.84 Aligned_cols=159 Identities=11% Similarity=-0.031 Sum_probs=89.0
Q ss_pred ceEeeecCCCcceEEEEeecCc-----eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC-
Q 013470 115 PKPVTFFDGHRYTITHISAGWN-----HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR- 188 (442)
Q Consensus 115 p~~i~~~~~~~~~i~~vs~G~~-----~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~- 188 (442)
...+..+..+...|..|+.... +.+.-..||.|..|-....+ ......+.. ....|..++...+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~-h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---------QTIPKAQQM-HTGPVLDVCWSDDG 98 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---------CEEEEEEEE-CSSCEEEEEECTTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---------ceeEEEecc-ccCCEEEEEECcCC
Confidence 3444555555567888888765 34444678999999643211 111112222 2346877776544
Q ss_pred -ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEe--cCC--eEEEEcCCCcEEEeeCCC
Q 013470 189 -HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISA--NGD--RSAALSAEGHLYTWGRGF 263 (442)
Q Consensus 189 -h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~--g~~--~s~~lt~~G~vy~wG~~~ 263 (442)
..+.... +|.|..|-.... .. ..... ....|..+.. ... +.+.-..+|.|++|-...
T Consensus 99 ~~l~s~~~---dg~v~iwd~~~~----------~~----~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 99 SKVFTASC---DKTAKMWDLSSN----------QA----IQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp SEEEEEET---TSEEEEEETTTT----------EE----EEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred CEEEEEcC---CCcEEEEEcCCC----------Cc----eeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 3333444 899999954211 10 11111 2345777765 333 344456789999996433
Q ss_pred CCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEEeCC
Q 013470 264 NSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 264 ~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n 306 (442)
... ...+.....+..+..-....++...++.++.|-..
T Consensus 161 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 161 SNP-----MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp SSC-----SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred CcE-----EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 211 11222334566666667778888888999988654
No 38
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=88.88 E-value=16 Score=34.49 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=59.6
Q ss_pred CcEEEEEeCC---ceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCc---eEEE
Q 013470 67 SSVSMLACGG---AHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN---HSGF 140 (442)
Q Consensus 67 ~~i~~I~~G~---~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~---~s~~ 140 (442)
..|..++... ...+.-.. |+.|..|-....+... ....| +..+..+...|..|+.... ..+.
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~-----dg~v~vw~~~~~~~~~-----~~~~~--~~~~~~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSE-----DCTVMVWEIPDGGLVL-----PLREP--VITLEGHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEET-----TSEEEEEECCTTCCSS-----CBCSC--SEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEeC-----CCeEEEEEccCCCCcc-----ccCCc--eEEecCCCCeEEEEEECcCCCCEEEE
Confidence 4788887653 33333345 8999999765432211 00011 1112222245777766543 3444
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEe-ecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS-SFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGS 207 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~-~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~ 207 (442)
-..||.|+.|-..... ....+. ......|..++...+ ..+.-.. +|.|+.|-.
T Consensus 150 ~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~ 205 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGA-----------AVLTLGPDVHPDTIYSVDWSRDGALICTSCR---DKRVRVIEP 205 (402)
T ss_dssp EETTSCEEEEETTTTE-----------EEEEECTTTCCSCEEEEEECTTSSCEEEEET---TSEEEEEET
T ss_pred EcCCCEEEEEECCCCC-----------ccEEEecCCCCCceEEEEECCCCCEEEEEec---CCcEEEEeC
Confidence 5678999999643211 011110 112345777776533 3333344 899999943
No 39
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=86.19 E-value=20 Score=32.89 Aligned_cols=111 Identities=9% Similarity=-0.056 Sum_probs=53.8
Q ss_pred CceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCc
Q 013470 178 KNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGH 255 (442)
Q Consensus 178 ~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~ 255 (442)
..|..++...+..++++. ..||.|..|-.... . ....+ ......|..++.... ..+.-..+|.
T Consensus 185 ~~v~~~~~~~~~~~l~sg-~~d~~v~~wd~~~~----------~---~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSG-ACDASAKLWDVREG----------M---CRQTF-TGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTC----------S---EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceEEEEECCCCCEEEEE-eCCCcEEEEECCCC----------e---eEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 357777765544333332 11788988843210 0 00111 112235666665433 4444567899
Q ss_pred EEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEEECCCcEEEEeC
Q 013470 256 LYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 256 vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~ 305 (442)
|.+|.......+..... -.....|..++.. ..+.++-..+|.|..|-.
T Consensus 250 v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 250 CRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEEETTTTEEEEEECC--TTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEECCCCcEEEEEcc--CCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 99996543211100000 0011245555543 334455567888888853
No 40
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=85.97 E-value=20 Score=32.48 Aligned_cols=203 Identities=9% Similarity=-0.066 Sum_probs=103.1
Q ss_pred CcEEEEEeCCc--eeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec--Cc-eEEEE
Q 013470 67 SSVSMLACGGA--HVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG--WN-HSGFV 141 (442)
Q Consensus 67 ~~i~~I~~G~~--h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G--~~-~s~~l 141 (442)
..|..++.... ..+.-.. |+.|+.|-..... ....+..+.. .. ..|..++.. .. +.+.-
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~-----d~~v~iw~~~~~~--------~~~~~~~~~~-~~--~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSW-----DGSLTVYKFDIQA--------KNVDLLQSLR-YK--HPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET-----TSEEEEEEEETTT--------TEEEEEEEEE-CS--SCEEEEEEEESSSEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-----CCeEEEEEeCCCC--------ccccceeeee-cC--CceEEEEECCCCCcEEEEE
Confidence 46777765543 3333345 8999999753211 0111111211 11 346666554 34 55566
Q ss_pred EeCCCEEEeCC-CCCcccCCCCCCCcccceEEee-cCCCceEEEEeC-CCceEEEEeecCCCeeeeeCCCCCCCCCCCCC
Q 013470 142 SDSGCLFTCGD-GTFGQLGHGDYRSHSSPVKVSS-FVNKNVHQIACG-MRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKD 218 (442)
Q Consensus 142 t~~g~vy~~G~-n~~gqlG~~~~~~~~~p~~v~~-~~~~~I~~I~~G-~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~ 218 (442)
..+|.|+.|-. ... ++ ..+.. .....|..++.. ....+.... +|.|+.|-......-
T Consensus 76 ~~dg~i~~wd~~~~~-~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~---d~~i~iwd~~~~~~~----- 135 (342)
T 1yfq_A 76 TVQGEILKVDLIGSP-SF-----------QALTNNEANLGICRICKYGDDKLIAASW---DGLIEVIDPRNYGDG----- 135 (342)
T ss_dssp ETTSCEEEECSSSSS-SE-----------EECBSCCCCSCEEEEEEETTTEEEEEET---TSEEEEECHHHHTTB-----
T ss_pred cCCCeEEEEEeccCC-ce-----------EeccccCCCCceEEEEeCCCCEEEEEcC---CCeEEEEcccccccc-----
Confidence 77899999964 221 11 11111 022456666654 334444445 899999943210000
Q ss_pred CCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC---CeEEEEE
Q 013470 219 RIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW---NHVLVLT 295 (442)
Q Consensus 219 ~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~---~~~~~l~ 295 (442)
.......+..... ....|..++......++-..+|.|++|.....+.. ............|..++... ...++-.
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 0000000000001 22367777777777666788999999976541111 01111123345677766643 5556667
Q ss_pred CCCcEEEEeCCC
Q 013470 296 GDGEVLMLGGSH 307 (442)
Q Consensus 296 ~~G~vy~~G~n~ 307 (442)
.+|.+..|-...
T Consensus 214 ~dg~i~i~~~~~ 225 (342)
T 1yfq_A 214 IDGRVAVEFFDD 225 (342)
T ss_dssp TTSEEEEEECCT
T ss_pred cCCcEEEEEEcC
Confidence 888888886543
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.61 E-value=19 Score=31.97 Aligned_cols=144 Identities=11% Similarity=-0.059 Sum_probs=79.5
Q ss_pred ceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe---CCCceEEEEeecCCCee
Q 013470 126 YTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC---GMRHSLVLLKDCLGNQV 202 (442)
Q Consensus 126 ~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~---G~~h~~~lt~~~~~G~v 202 (442)
..|..++....+.+.-..+|.|+.|-. ..+..........+..+.. .....+.... +|.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i 167 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE--------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASA---DKTI 167 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET--------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEET---TSCE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC--------------CcEEEecccCCCceeEEEEccCCCCEEEEEEC---CCCE
Confidence 568888887777777788999999941 1111111112345655554 3344444555 8999
Q ss_pred eeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC-eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCe
Q 013470 203 YGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD-RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSF 281 (442)
Q Consensus 203 y~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~-~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i 281 (442)
+.|-.. . ....+.......+..++.... ..++-..+|.|++|-....... .........|
T Consensus 168 ~i~d~~------------~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i 228 (313)
T 3odt_A 168 KLWQND------------K---VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL----RTYEGHESFV 228 (313)
T ss_dssp EEEETT------------E---EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE----EEEECCSSCE
T ss_pred EEEecC------------c---eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh----hhhhcCCceE
Confidence 998310 0 011111112335666555433 3555678899999975432111 0111234567
Q ss_pred eEEEeCCC-eEEEEECCCcEEEEeC
Q 013470 282 SQAALGWN-HVLVLTGDGEVLMLGG 305 (442)
Q Consensus 282 ~~i~~G~~-~~~~l~~~G~vy~~G~ 305 (442)
..++.... ..++-..+|.|+.|-.
T Consensus 229 ~~~~~~~~~~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 229 YCIKLLPNGDIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEEECTTSCEEEEETTSEEEEECT
T ss_pred EEEEEecCCCEEEEecCCEEEEEEC
Confidence 77766533 5666678889999853
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=84.88 E-value=33 Score=34.05 Aligned_cols=68 Identities=10% Similarity=-0.052 Sum_probs=39.6
Q ss_pred cEEEEEecCCeEEEEcC-CCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEEECCCcEEEEeCC
Q 013470 236 EIVGISANGDRSAALSA-EGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 236 ~i~~i~~g~~~s~~lt~-~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~n 306 (442)
.+..++....+.+.-.. +|.|+.|-....... ..........|..++.. ..+.+.-..+|.|+.|-..
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS---FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEE---EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCcccc---ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 45555555555555566 899999965432100 01111234567777663 4556666788999999654
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=82.82 E-value=30 Score=32.05 Aligned_cols=169 Identities=12% Similarity=0.025 Sum_probs=85.6
Q ss_pred ecCCCcceEEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC---------ce
Q 013470 120 FFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR---------HS 190 (442)
Q Consensus 120 ~~~~~~~~i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~---------h~ 190 (442)
.+..+...|..|+....+.+.-..||.|+.|-...... .........+. .....|..++...+ ..
T Consensus 11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEE
Confidence 34444467888888776666667899999996533110 00001112222 22345777765543 23
Q ss_pred EEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccC----CCcEEEEEec------CCe-EEEEcCCCcEEEe
Q 013470 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH----DIEIVGISAN------GDR-SAALSAEGHLYTW 259 (442)
Q Consensus 191 ~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~----~~~i~~i~~g------~~~-s~~lt~~G~vy~w 259 (442)
+.... +|.|+.|-...... ........+.... ...|..++.. ..+ .++-..+|.|++|
T Consensus 85 ~s~~~---dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 85 ATTSF---SGDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EEEET---TSCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred EEEcC---CCCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 33344 78898884321100 0000011122221 2457666655 344 4555689999999
Q ss_pred eCCC------CCCCCCCCcc-cc--------CCCCCeeEEEeCCC-eEEEEECCCcEEEEeCC
Q 013470 260 GRGF------NSTSDVNCPQ-SL--------PSSLSFSQAALGWN-HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 260 G~~~------~~~~~~~~p~-~i--------~~~~~i~~i~~G~~-~~~~l~~~G~vy~~G~n 306 (442)
-... ..... ..|. .+ .....|..++.... ..++-..+|.|+.|-..
T Consensus 154 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 154 KFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELS 215 (397)
T ss_dssp EEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETT
T ss_pred eCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECC
Confidence 7654 22211 1111 11 12445666665433 44445677888888643
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=82.17 E-value=32 Score=31.92 Aligned_cols=146 Identities=11% Similarity=0.030 Sum_probs=73.8
Q ss_pred ceEEEEeecCc--eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeec--CCCceEEEEeCCC---ceEEEEeecC
Q 013470 126 YTITHISAGWN--HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSF--VNKNVHQIACGMR---HSLVLLKDCL 198 (442)
Q Consensus 126 ~~i~~vs~G~~--~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~I~~I~~G~~---h~~~lt~~~~ 198 (442)
..|..|+.... +.+.-..||.|..|-... ...+..+ ....|..|+...+ ..+....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~--- 202 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE--- 202 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEET---
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeecc---
Confidence 34666665443 444446789999995332 1112211 1245777776432 2334445
Q ss_pred CCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEE-EcCCCcEEEeeCCCCCCCCCCCcccc
Q 013470 199 GNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAA-LSAEGHLYTWGRGFNSTSDVNCPQSL 275 (442)
Q Consensus 199 ~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~-lt~~G~vy~wG~~~~~~~~~~~p~~i 275 (442)
+|.|..|-......+. ..........+..++... ...++ -..++.|++|-....... ....
T Consensus 203 dg~v~~wd~~~~~~~~------------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~ 266 (357)
T 4g56_B 203 DGRILLWDTRKPKPAT------------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSA 266 (357)
T ss_dssp TSCEEECCTTSSSCBC------------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEEC
T ss_pred CCceEEEECCCCceee------------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEe
Confidence 8999999432111100 000011223466666542 23333 367899999964321111 1111
Q ss_pred CCCCCeeEEEeCC---CeEEEEECCCcEEEEe
Q 013470 276 PSSLSFSQAALGW---NHVLVLTGDGEVLMLG 304 (442)
Q Consensus 276 ~~~~~i~~i~~G~---~~~~~l~~~G~vy~~G 304 (442)
.....|..++... ...+.-..||.|+.|-
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 2345677777542 3344457889999994
No 45
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=80.71 E-value=33 Score=31.07 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=12.2
Q ss_pred CCeEEEEECCCcEEEEeC
Q 013470 288 WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~ 305 (442)
..|++++. +++||.+|-
T Consensus 207 ~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 207 SGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEEeC
Confidence 35666555 789999984
No 46
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=80.30 E-value=39 Score=31.66 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=80.7
Q ss_pred EEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec---CceEEEEEeCCCEE
Q 013470 72 LACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG---WNHSGFVSDSGCLF 148 (442)
Q Consensus 72 I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G---~~~s~~lt~~g~vy 148 (442)
+++...+..++... ..||.|++|-....+.+. ..+..+..+...|..++.. ....+.-..||.|.
T Consensus 40 ~~~~~~~~~~~~~~--~~~g~i~v~~~~~~~~~~----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~ 107 (402)
T 2aq5_A 40 CAVNPKFMALICEA--SGGGAFLVLPLGKTGRVD----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM 107 (402)
T ss_dssp EEECSSEEEEEBCC--SSSCCEEEEETTCCEECC----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred EEECCCeEEEEEEE--cCCCEEEEEECccCCCCC----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE
Confidence 55555555554220 018999999865443321 1111222222457777764 34445556789999
Q ss_pred EeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc--eEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecC
Q 013470 149 TCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH--SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLP 226 (442)
Q Consensus 149 ~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h--~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p 226 (442)
.|-....+.. .....+..........|..|+...+. .++.... +|.|+.|-.... . ..
T Consensus 108 vw~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~----------~---~~ 167 (402)
T 2aq5_A 108 VWEIPDGGLV-----LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC--DNVILVWDVGTG----------A---AV 167 (402)
T ss_dssp EEECCTTCCS-----SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET--TSCEEEEETTTT----------E---EE
T ss_pred EEEccCCCCc-----cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC--CCEEEEEECCCC----------C---cc
Confidence 9965432111 01112222222223568888776542 3333332 899999943211 0 01
Q ss_pred eEee-ccCCCcEEEEEec--CCeEEEEcCCCcEEEeeCC
Q 013470 227 QVTI-GLHDIEIVGISAN--GDRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 227 ~~v~-~~~~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~ 262 (442)
..+. ......|..++.. ....+.-..+|.|++|...
T Consensus 168 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 1110 1123356666654 3345555688999999653
No 47
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=80.24 E-value=33 Score=30.86 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=12.1
Q ss_pred CCeEEEEECCCcEEEEeC
Q 013470 288 WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~ 305 (442)
..|+++.. +++||.+|-
T Consensus 239 ~~~~~~~~-~~~i~v~GG 255 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAG 255 (306)
T ss_dssp SCCEEEEE-TTEEEEEEC
T ss_pred cceeEEEE-CCEEEEEeC
Confidence 35666655 789999985
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=79.09 E-value=40 Score=31.14 Aligned_cols=205 Identities=10% Similarity=-0.021 Sum_probs=99.6
Q ss_pred CCcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC---------c
Q 013470 66 LSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW---------N 136 (442)
Q Consensus 66 ~~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~---------~ 136 (442)
...|..|+......+.-.. ||.|+.|-...... . . ....+..+..+...|..++... .
T Consensus 16 ~~~i~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~~-----~-~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSG-----DGYLKVWDNKLLDN-----E-N--PKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp SSCEEEEEECSSEEEEEET-----TSEEEEEESBCCTT-----C-C--GGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hcCeEEEEecCCeEEEEcC-----CCEEEEEECCCccc-----c-c--CCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 3578888877755555556 99999998643210 0 0 0111111112224566665543 3
Q ss_pred eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecC----CCceEEEEeC----C--Cc-eEEEEeecCCCeeeee
Q 013470 137 HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV----NKNVHQIACG----M--RH-SLVLLKDCLGNQVYGF 205 (442)
Q Consensus 137 ~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~----~~~I~~I~~G----~--~h-~~~lt~~~~~G~vy~w 205 (442)
+.+....||.|+.|-...... ........+.... ...|..++.. . .+ .+.... +|.|+.|
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~---dg~i~iw 153 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV---KGTTYIW 153 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---TSCEEEE
T ss_pred EEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC---CCcEEEE
Confidence 444456789999995322100 0000011222221 2457777665 2 23 333345 8999988
Q ss_pred CCCC------CCCCCCCCCCCceeecCe-Eee------ccCCCcEEEEEecCC-eEEEEcCCCcEEEeeCCCCCCCCCCC
Q 013470 206 GSGK------RGQLGVSKDRIRSVSLPQ-VTI------GLHDIEIVGISANGD-RSAALSAEGHLYTWGRGFNSTSDVNC 271 (442)
Q Consensus 206 G~n~------~gqlg~~~~~~~~~~~p~-~v~------~~~~~~i~~i~~g~~-~s~~lt~~G~vy~wG~~~~~~~~~~~ 271 (442)
-... ...+. ..|. .+. ......|..++.... ..+.-..+|.|++|-......
T Consensus 154 d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----- 219 (397)
T 1sq9_A 154 KFHPFADESNSLTLN---------WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRP----- 219 (397)
T ss_dssp EEESSSSHHHHTTTC---------CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEE-----
T ss_pred eCCccccccccceee---------ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCce-----
Confidence 5432 11111 0111 111 112234555554433 444446788999996543111
Q ss_pred ccccCC-------CCCeeEEEeC--CCeEEEEECC---CcEEEEeCC
Q 013470 272 PQSLPS-------SLSFSQAALG--WNHVLVLTGD---GEVLMLGGS 306 (442)
Q Consensus 272 p~~i~~-------~~~i~~i~~G--~~~~~~l~~~---G~vy~~G~n 306 (442)
...+.. ...|..++.. ..+.++-..+ |.|+.|-..
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 111112 4566666653 3445555666 788888643
No 49
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=78.92 E-value=37 Score=30.58 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=101.1
Q ss_pred CCcEEEEEeC--Cc-eeEEEeCCCcccCCeEEEEeC-CCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec-CceEEE
Q 013470 66 LSSVSMLACG--GA-HVLALTSPSSVIGGKVFSWGR-GSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG-WNHSGF 140 (442)
Q Consensus 66 ~~~i~~I~~G--~~-h~~~lt~~~~~~dg~v~~wG~-n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G-~~~s~~ 140 (442)
...|..++.. .. ..+.-.. |+.|+.|-. .. +++ ..+... .....|..++.. ....+.
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~-~~~-----------~~~~~~-~~~~~v~~l~~~~~~~l~s 117 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTV-----QGEILKVDLIGS-PSF-----------QALTNN-EANLGICRICKYGDDKLIA 117 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEET-----TSCEEEECSSSS-SSE-----------EECBSC-CCCSCEEEEEEETTTEEEE
T ss_pred CCceEEEEECCCCCcEEEEEcC-----CCeEEEEEeccC-Cce-----------Eecccc-CCCCceEEEEeCCCCEEEE
Confidence 3466666654 33 4444555 889999964 32 111 111110 012346666554 455566
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI 220 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~ 220 (442)
...||.|+.|-...... ........+..... ....|..++...+..++.+. +|.|+.|-....+..
T Consensus 118 ~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~------- 183 (342)
T 1yfq_A 118 ASWDGLIEVIDPRNYGD---GVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMN---NSQVQWFRLPLCEDD------- 183 (342)
T ss_dssp EETTSEEEEECHHHHTT---BCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEES---TTEEEEEESSCCTTC-------
T ss_pred EcCCCeEEEEccccccc---ccccccCCeeeEEe-eCCceEEEEecCCcEEEEeC---CCeEEEEECCccccc-------
Confidence 67889999995321000 00000000000001 22467788877777555556 899999964321110
Q ss_pred ceeecCeEeeccCCCcEEEEEecC---CeEEEEcCCCcEEEeeCCCCCCCCCCCccccC--C---------CCCeeEEEe
Q 013470 221 RSVSLPQVTIGLHDIEIVGISANG---DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLP--S---------SLSFSQAAL 286 (442)
Q Consensus 221 ~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~--~---------~~~i~~i~~ 286 (442)
............+..++... ...++-..+|.+++|-....+......+.... . ...|..++.
T Consensus 184 ----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 184 ----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp ----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred ----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 01111112233566666653 45555678899999876544110000111110 1 226677665
Q ss_pred C--CCeEEEEECCCcEEEEeC
Q 013470 287 G--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 287 G--~~~~~~l~~~G~vy~~G~ 305 (442)
. ....+.-..+|.|+.|-.
T Consensus 260 s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEET
T ss_pred cCCCCEEEEecCCceEEEEcC
Confidence 3 344555677888888854
No 50
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=78.66 E-value=15 Score=35.33 Aligned_cols=98 Identities=10% Similarity=0.130 Sum_probs=58.7
Q ss_pred eEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEe
Q 013470 180 VHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTW 259 (442)
Q Consensus 180 I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~w 259 (442)
|..|++ ....+++.. ++.|..|=.....+. .....+ ...+.++.+-....++++.+|.|++|
T Consensus 90 V~~l~f-d~~~L~v~~---~~~l~v~dv~sl~~~-------------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~ 151 (388)
T 1xip_A 90 VIFVCF-HGDQVLVST---RNALYSLDLEELSEF-------------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSAL 151 (388)
T ss_dssp EEEEEE-ETTEEEEEE---SSEEEEEESSSTTCE-------------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred eeEEEE-CCCEEEEEc---CCcEEEEEchhhhcc-------------Ccccee-ecceeeEEecCCCEEEEECCCCEEEE
Confidence 999999 777888887 899999843322110 011111 12456666666567778999999999
Q ss_pred eCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEE
Q 013470 260 GRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLML 303 (442)
Q Consensus 260 G~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~ 303 (442)
-...... .. ....|..++-...-.++...||++..|
T Consensus 152 dl~~~~~------~~--~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 152 DLRTKST------KQ--LAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTTCCE------EE--EEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EccCCcc------cc--ccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 6532111 11 123566666555555555566666555
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=78.49 E-value=46 Score=31.47 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=37.8
Q ss_pred CcEEEEEeCCce--eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEeC
Q 013470 67 SSVSMLACGGAH--VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h--~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~~ 144 (442)
..|..|+..... .+.-+. |+.|..|-... ...+..+..+...+..++......+.-..+
T Consensus 148 ~~V~sv~fspdg~~lasgs~-----Dg~v~iWd~~~--------------~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d 208 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQ--------------QKRLRNMTSHSARVGSLSWNSYILSSGSRS 208 (420)
T ss_dssp CCEEEEEECTTSSEEEEEET-----TSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEEC-----CCeEEEEEcCC--------------CcEEEEEeCCCCceEEEeeCCCEEEEEeCC
Confidence 357777655332 223344 78888886432 122333333345677777766665556677
Q ss_pred CCEEEeC
Q 013470 145 GCLFTCG 151 (442)
Q Consensus 145 g~vy~~G 151 (442)
+.++.|-
T Consensus 209 ~~i~~~d 215 (420)
T 4gga_A 209 GHIHHHD 215 (420)
T ss_dssp SEEEEEE
T ss_pred CceeEee
Confidence 8888774
No 52
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=77.66 E-value=39 Score=30.23 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.0
Q ss_pred CeEEEEECCCcEEEEeCC
Q 013470 289 NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 289 ~~~~~l~~~G~vy~~G~n 306 (442)
.|+++.. +++||.+|-.
T Consensus 199 ~~~~~~~-~~~i~v~GG~ 215 (301)
T 2vpj_A 199 GAGVALL-NDHIYVVGGF 215 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cceEEEE-CCEEEEEeCC
Confidence 5566555 6899999743
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=77.54 E-value=45 Score=30.87 Aligned_cols=189 Identities=12% Similarity=0.054 Sum_probs=97.1
Q ss_pred CcEEEEEeCCceeEEE--eCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC---ceEEEE
Q 013470 67 SSVSMLACGGAHVLAL--TSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW---NHSGFV 141 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~l--t~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~---~~s~~l 141 (442)
..|..|+.......++ .. |+.|..|-... ...+..+..+...|..|+... ...+..
T Consensus 140 ~~V~~v~~spdg~~l~sgs~-----dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~ 200 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGK-----DFSVKVWDLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSC 200 (357)
T ss_dssp SCEEEEEECSSSSEEEEEET-----TSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeC-----CCeEEEEECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeee
Confidence 4677777654433333 34 88888886432 223333333335677776632 344555
Q ss_pred EeCCCEEEeCCCCCcccCCCCCCCcccceEEe-ecCCCceEEEEeCC--CceEEE-EeecCCCeeeeeCCCCCCCCCCCC
Q 013470 142 SDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS-SFVNKNVHQIACGM--RHSLVL-LKDCLGNQVYGFGSGKRGQLGVSK 217 (442)
Q Consensus 142 t~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~-~~~~~~I~~I~~G~--~h~~~l-t~~~~~G~vy~wG~n~~gqlg~~~ 217 (442)
..||.|..|-......+ ..+. ......+..|+... .+.++. .. ++.|+.|-....
T Consensus 201 ~~dg~v~~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~~~~------- 259 (357)
T 4g56_B 201 GEDGRILLWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNIKNP------- 259 (357)
T ss_dssp ETTSCEEECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEEESSCG-------
T ss_pred ccCCceEEEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeec---ccceeEEECCCC-------
Confidence 67899999953221110 0011 11123466666542 234444 44 788988843210
Q ss_pred CCCceeecCeEeeccCCCcEEEEEecC---CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC---CCeE
Q 013470 218 DRIRSVSLPQVTIGLHDIEIVGISANG---DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG---WNHV 291 (442)
Q Consensus 218 ~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G---~~~~ 291 (442)
.....+. .....|..++... .+.+.-..||.|++|-... +++ ...+.....|..|+.. ....
T Consensus 260 ------~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~----~~~~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 260 ------DSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV----FRDLSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp ------GGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE----EEECCCSSCEEEEEECSSSTTEE
T ss_pred ------cEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE----eEECCCCCCEEEEEEeCCCCCEE
Confidence 0111111 2233577776543 2334456889999995432 111 1112234567788754 2334
Q ss_pred EEEECCCcEEEEeCCC
Q 013470 292 LVLTGDGEVLMLGGSH 307 (442)
Q Consensus 292 ~~l~~~G~vy~~G~n~ 307 (442)
+.-..||+|+.|--..
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 4456889999996443
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=77.24 E-value=46 Score=30.82 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=38.3
Q ss_pred cEEEEEec--CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCC-eEEEEECCCcEEEEeC
Q 013470 236 EIVGISAN--GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWN-HVLVLTGDGEVLMLGG 305 (442)
Q Consensus 236 ~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~-~~~~l~~~G~vy~~G~ 305 (442)
.|..++.. ..+.+.-..+|.|++|-....... .........|..++.... ..++...+|.|+.|-.
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ----NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSL 317 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS----EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc----eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEEC
Confidence 56555544 334555567899999964332111 111123456666665433 6666678889999864
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=76.33 E-value=62 Score=31.90 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=75.2
Q ss_pred ceEEEEeecCc---eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCC---ceEEEEeCCC---ceEEEEee
Q 013470 126 YTITHISAGWN---HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNK---NVHQIACGMR---HSLVLLKD 196 (442)
Q Consensus 126 ~~i~~vs~G~~---~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~---~I~~I~~G~~---h~~~lt~~ 196 (442)
..|..++.... ..+.-..||.|+.|-..... ....+.. ... .|..++...+ ..+....
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~- 227 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----------FSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGS- 227 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----------EEEEECS-SSCTTCCEEEEEECSTTCCEEEEEET-
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----------eeeeecc-cCCCCceEEEEEECCCCCCEEEEEeC-
Confidence 44666655443 34455678888888532210 0011111 123 5777776644 3333445
Q ss_pred cCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeec---cCCCcEEEEEe-cCCeEEEEcCCCcEEEeeCCCCCCCCCCCc
Q 013470 197 CLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIG---LHDIEIVGISA-NGDRSAALSAEGHLYTWGRGFNSTSDVNCP 272 (442)
Q Consensus 197 ~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~---~~~~~i~~i~~-g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p 272 (442)
+|.|+.|-.... + ....+.. .....|..++. ...+.+....+|.|.+|-............
T Consensus 228 --dg~i~vwd~~~~-~------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 228 --DRKISCFDGKSG-E------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp --TCCEEEEETTTC-C------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred --CCeEEEEECCCC-C------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 899999953211 0 0011101 12235666655 344555567789999996542211100000
Q ss_pred cccCCCCCeeEEEe-CCCeEEEEECCCcEEEEeCC
Q 013470 273 QSLPSSLSFSQAAL-GWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 273 ~~i~~~~~i~~i~~-G~~~~~~l~~~G~vy~~G~n 306 (442)
..-.....+..+.. ...+.++-..+|.|+.|-..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 00001123333333 55666777888999998643
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=75.73 E-value=50 Score=30.53 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=71.3
Q ss_pred eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCC
Q 013470 137 HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLG 214 (442)
Q Consensus 137 ~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg 214 (442)
..++...+|.|+.|-.... .+..........|..++...+ ..+.-.. +|.|+.|-.....
T Consensus 219 ~~~~~~~~g~i~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~--- 280 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEK------------TPTGKLIGHHGPISVLEFNDTNKLLLSASD---DGTLRIWHGGNGN--- 280 (425)
T ss_dssp EEEEECGGGCEEEEETTCS------------SCSEEECCCSSCEEEEEEETTTTEEEEEET---TSCEEEECSSSBS---
T ss_pred EEEEEcCCCeEEEEEcCCC------------ceeeeeccCCCceEEEEECCCCCEEEEEcC---CCEEEEEECCCCc---
Confidence 3455567888888864321 111111112245666665433 3333344 7899998532210
Q ss_pred CCCCCCceeecCeEeeccCCCcEEEEEecCC-eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeE
Q 013470 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGD-RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHV 291 (442)
Q Consensus 215 ~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~-~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~ 291 (442)
....+. .....|..++.... ..++...+|.|++|-....... .........|..++.. ..+.
T Consensus 281 ----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 281 ----------SQNCFY-GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL----ALSIVDGVPIFAGRISQDGQKY 345 (425)
T ss_dssp ----------CSEEEC-CCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEE----EEEECTTCCEEEEEECTTSSEE
T ss_pred ----------cceEec-CCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEe----EecccCCccEEEEEEcCCCCEE
Confidence 111111 12235666665544 5555678999999965322110 1111224466666654 3455
Q ss_pred EEEECCCcEEEEeCC
Q 013470 292 LVLTGDGEVLMLGGS 306 (442)
Q Consensus 292 ~~l~~~G~vy~~G~n 306 (442)
++-..+|.|+.|-..
T Consensus 346 ~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 346 AVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEETTSCEEEEECH
T ss_pred EEEECCCeEEEEECC
Confidence 556778899988654
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=73.79 E-value=57 Score=30.24 Aligned_cols=153 Identities=5% Similarity=-0.057 Sum_probs=76.5
Q ss_pred eEEEEeecC---ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecC-----CCceEEEEeCCC--ceEEEEee
Q 013470 127 TITHISAGW---NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV-----NKNVHQIACGMR--HSLVLLKD 196 (442)
Q Consensus 127 ~i~~vs~G~---~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~-----~~~I~~I~~G~~--h~~~lt~~ 196 (442)
.|..++... ...+.-..+|.|+.|-...... ...+.... ...|..++...+ ..++....
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-----------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------ceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 455565543 3334445788999996432110 11111111 345777776544 23444332
Q ss_pred cCCC---eeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEec---CCeEEEEcCCCcEEEeeCCCCCCCCCC
Q 013470 197 CLGN---QVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN---GDRSAALSAEGHLYTWGRGFNSTSDVN 270 (442)
Q Consensus 197 ~~~G---~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g---~~~s~~lt~~G~vy~wG~~~~~~~~~~ 270 (442)
++ .|+.|-.....+.- ..+.......|..++.. ..+.+.-..+|.|++|-......+
T Consensus 236 --d~~~~~i~~~d~~~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~--- 298 (416)
T 2pm9_A 236 --SDNDPSILIWDLRNANTPL------------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL--- 298 (416)
T ss_dssp --CSSSCCCCEEETTSTTSCS------------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE---
T ss_pred --CCCCceEEEEeCCCCCCCc------------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc---
Confidence 56 88888543211110 00000112356666653 445666678999999964322110
Q ss_pred CccccCCCCCeeEEEeCC---CeEEEEECCCcEEEEeCCCC
Q 013470 271 CPQSLPSSLSFSQAALGW---NHVLVLTGDGEVLMLGGSHH 308 (442)
Q Consensus 271 ~p~~i~~~~~i~~i~~G~---~~~~~l~~~G~vy~~G~n~~ 308 (442)
.........|..++... ...+.-..||.|..|--...
T Consensus 299 -~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 299 -SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 00011234555566544 34445567889999976543
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=71.97 E-value=63 Score=29.93 Aligned_cols=201 Identities=12% Similarity=0.070 Sum_probs=98.7
Q ss_pred CCcEEEEEeCCcee--EEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec---CceEEE
Q 013470 66 LSSVSMLACGGAHV--LALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG---WNHSGF 140 (442)
Q Consensus 66 ~~~i~~I~~G~~h~--~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G---~~~s~~ 140 (442)
...|..++...... +.-.. |+.|..|-...... ....+..+..+...|..++.. ....+.
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~-----dg~v~vw~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALD-----NGSLELYSTNEANN----------AINSMARFSNHSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEES-----SSCEEEECCSSTTS----------CCCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred CCceEEEEECCCCCeEEEEcc-----CCeEEEeecccccc----------cccchhhccCCccceEEEEEcCCCCCEEEE
Confidence 35777777644332 22335 88999996543100 011222222223456666654 345555
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEe--ecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS--SFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVS 216 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~--~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~ 216 (442)
-..||.|+.|-........ ....+..+. ......|..++...+ +.++.... +|.|+.|-....
T Consensus 132 ~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~------ 198 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--SNFASIWDLKAK------ 198 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS--SSCEEEEETTTT------
T ss_pred EcCCCeEEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC--CCCEEEEECCCC------
Confidence 5678999999654321000 000111110 011235666666544 33333222 788998843221
Q ss_pred CCCCceeecCeEeeccC-----CCcEEEEEecCC---eEEEEcCCC---cEEEeeCCCCCCCCCCCcccc--CCCCCeeE
Q 013470 217 KDRIRSVSLPQVTIGLH-----DIEIVGISANGD---RSAALSAEG---HLYTWGRGFNSTSDVNCPQSL--PSSLSFSQ 283 (442)
Q Consensus 217 ~~~~~~~~~p~~v~~~~-----~~~i~~i~~g~~---~s~~lt~~G---~vy~wG~~~~~~~~~~~p~~i--~~~~~i~~ 283 (442)
. ....+.... ...|..++.... ..+.-..+| .|++|-....... ...+ .....|..
T Consensus 199 ----~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 199 ----K---EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----LQTLNQGHQKGILS 267 (416)
T ss_dssp ----E---EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEE
T ss_pred ----C---cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----cEEeecCccCceeE
Confidence 0 011111110 345777766543 344445666 8888865432211 0111 13456777
Q ss_pred EEe---CCCeEEEEECCCcEEEEeC
Q 013470 284 AAL---GWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 284 i~~---G~~~~~~l~~~G~vy~~G~ 305 (442)
++. .....+.-..+|.|+.|-.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 775 3455666678899999853
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=71.90 E-value=58 Score=29.53 Aligned_cols=154 Identities=8% Similarity=-0.097 Sum_probs=73.6
Q ss_pred eEEEEeecC--ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc--eEEEEeecCCCee
Q 013470 127 TITHISAGW--NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH--SLVLLKDCLGNQV 202 (442)
Q Consensus 127 ~i~~vs~G~--~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h--~~~lt~~~~~G~v 202 (442)
.|..++... .+.++-..+|.|+.|-..... ......+.. ....|..++...+. .+.-.. +|.|
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~---dg~i 76 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGT---DRNA 76 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------EEEEEEEEC-CSSCEEEEEEETTTTEEEEEET---TSCE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------EEeeeeecC-CCCcccEEEEeCCCCEEEEEcC---CCeE
Confidence 455555443 333334478888888532110 001111111 22457777655332 333344 7888
Q ss_pred eeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCC
Q 013470 203 YGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLS 280 (442)
Q Consensus 203 y~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~ 280 (442)
+.|-.... ...+..........|..++... ...++-..+|.|++|-....................
T Consensus 77 ~vwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 77 YVWTLKGR------------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp EEEEEETT------------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred EEEECCCC------------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC
Confidence 88832110 0011111111223566665543 345555678999998654322100001111122456
Q ss_pred eeEEEeC--CCeEEEEECCCcEEEEeC
Q 013470 281 FSQAALG--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 281 i~~i~~G--~~~~~~l~~~G~vy~~G~ 305 (442)
|..++.. ....+.-..+|.|+.|-.
T Consensus 145 i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 145 VLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 7777654 345555678899999974
No 60
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=71.56 E-value=42 Score=32.07 Aligned_cols=133 Identities=12% Similarity=0.120 Sum_probs=72.9
Q ss_pred EEEEeecCceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCC
Q 013470 128 ITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGS 207 (442)
Q Consensus 128 i~~vs~G~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~ 207 (442)
|.+|++ ....+++.+++.|..|--....+ ......+. ..+.++.+-....++++. +|.|+.|-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~~-~~v~~i~~~~p~~av~~~---dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSFE-KPVFQLKNVNNTLVILNS---VNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEECS-SCEEEEEECSSEEEEEET---TSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCccceee-cceeeEEecCCCEEEEEC---CCCEEEEEc
Confidence 899999 66667777889999986433211 11122221 345566655555667777 999999933
Q ss_pred CCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCC---CCCCCCccccC----CCCC
Q 013470 208 GKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNS---TSDVNCPQSLP----SSLS 280 (442)
Q Consensus 208 n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~---~~~~~~p~~i~----~~~~ 280 (442)
.+. + . .+ + ...|..++....-.++...+|++..|-..... +.....|..+. ....
T Consensus 154 ~~~-~---------~--~~--~----~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 154 RTK-S---------T--KQ--L----AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp TTC-C---------E--EE--E----EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred cCC-c---------c--cc--c----cCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee
Confidence 210 0 0 01 1 12577777776665666677887777332111 11122232222 3456
Q ss_pred eeEEEeCCCeEEEE
Q 013470 281 FSQAALGWNHVLVL 294 (442)
Q Consensus 281 i~~i~~G~~~~~~l 294 (442)
|..|.--.++.+++
T Consensus 216 V~sI~wl~~~~flv 229 (388)
T 1xip_A 216 PLSVTILSPQDFLA 229 (388)
T ss_dssp EEEEEESSSSEEEE
T ss_pred EEEEEEecCCeEEE
Confidence 66666555544444
No 61
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=70.75 E-value=72 Score=30.08 Aligned_cols=150 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEEeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~ 144 (442)
..|..++......++++.+. |+.|..|-..... .+..+..+...|..|+... .+.+.-..|
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~---Dg~i~vwd~~~~~--------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASE---DATIKVWDYETGD--------------FERTLKGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp SCEEEEEECSSSSEEEEEES---SSCEEEEETTTCC--------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc--------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence 46777776655444444311 8899999643211 1112222223566666543 334444678
Q ss_pred CCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCce
Q 013470 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRS 222 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~ 222 (442)
|.|..|-......+ ..+.. ....|..++...+ +.+.-.. |+.|..|-.... ++
T Consensus 172 ~~i~iwd~~~~~~~-----------~~~~~-h~~~V~~v~~~p~~~~l~s~s~---D~~i~~wd~~~~-~~--------- 226 (410)
T 1vyh_C 172 MTIKLWDFQGFECI-----------RTMHG-HDHNVSSVSIMPNGDHIVSASR---DKTIKMWEVQTG-YC--------- 226 (410)
T ss_dssp SCCCEEETTSSCEE-----------ECCCC-CSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTC-CE---------
T ss_pred CeEEEEeCCCCcee-----------EEEcC-CCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC-cE---------
Confidence 88888854321110 00011 1234666665433 3444445 899999954221 00
Q ss_pred eecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCC
Q 013470 223 VSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRG 262 (442)
Q Consensus 223 ~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~ 262 (442)
...+.. ....|..+.... ...+.-..+|.|.+|-..
T Consensus 227 ---~~~~~~-h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 227 ---VKTFTG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp ---EEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ---EEEEeC-CCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 001111 122354554433 234444678889999653
No 62
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=70.37 E-value=60 Score=29.06 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=12.4
Q ss_pred CCeEEEEECCCcEEEEeC
Q 013470 288 WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~ 305 (442)
..|+++.. +++||.+|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 45666665 789999974
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=70.23 E-value=62 Score=29.15 Aligned_cols=151 Identities=7% Similarity=-0.045 Sum_probs=74.5
Q ss_pred ceEEEEeecCc--eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCe
Q 013470 126 YTITHISAGWN--HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQ 201 (442)
Q Consensus 126 ~~i~~vs~G~~--~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~ 201 (442)
..|..++.... +.+.-..||.|+.|-.... .....+.. ....|..++...+ +.+.... +|.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~---dg~ 97 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSA---DYS 97 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEET---TTE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeC---CCe
Confidence 46777776543 4444467899999953221 01111111 2345777776533 3333444 899
Q ss_pred eeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCC-----CcEEEeeCCCCCCCCCCC---
Q 013470 202 VYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAE-----GHLYTWGRGFNSTSDVNC--- 271 (442)
Q Consensus 202 vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~-----G~vy~wG~~~~~~~~~~~--- 271 (442)
|+.|-..... . ...+. ....+..++... .+.++...+ |.|++|-...........
T Consensus 98 i~iwd~~~~~----------~---~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 98 IKLWDVSNGQ----------C---VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp EEEEETTTCC----------E---EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred EEEEECCCCc----------E---EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 9999432210 0 01111 223455555443 344444555 888888764332211100
Q ss_pred --c-ccc---CCCCCeeEEEeC--CCeEEEEECCCcEEEEeCC
Q 013470 272 --P-QSL---PSSLSFSQAALG--WNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 272 --p-~~i---~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~n 306 (442)
+ ..+ .....+..++.. ..+.++-..+|.|+.|-..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 0 000 111145555443 3455556778888888643
No 64
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=70.04 E-value=60 Score=28.93 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=11.9
Q ss_pred CCeEEEEECCCcEEEEeC
Q 013470 288 WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~ 305 (442)
..|+++.. +++||.+|-
T Consensus 245 ~~~~~~~~-~~~i~v~GG 261 (301)
T 2vpj_A 245 CYVGATVL-RGRLYAIAG 261 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEEcC
Confidence 35555555 789999985
No 65
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=68.89 E-value=72 Score=29.38 Aligned_cols=186 Identities=13% Similarity=0.045 Sum_probs=93.3
Q ss_pred CcEEEEEeCCceeEEE--eCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCc---eEEEE
Q 013470 67 SSVSMLACGGAHVLAL--TSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN---HSGFV 141 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~l--t~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~---~s~~l 141 (442)
..|..|+....-..++ .. |+.|..|-... ...+..+..+...|..++.... ..+.-
T Consensus 128 ~~V~~v~~spdg~~l~sgs~-----d~~i~iwd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSK-----DICIKVWDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeC-----CCeEEEEECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence 4677776544333333 34 78888885432 2333444444456777776443 22334
Q ss_pred EeCCCEEEeCCCCCcccCCCCCCCcccce-EEe-ecCCCceEEEEeCC--CceEEE-EeecCCCeeeeeCCCCCCCCCCC
Q 013470 142 SDSGCLFTCGDGTFGQLGHGDYRSHSSPV-KVS-SFVNKNVHQIACGM--RHSLVL-LKDCLGNQVYGFGSGKRGQLGVS 216 (442)
Q Consensus 142 t~~g~vy~~G~n~~gqlG~~~~~~~~~p~-~v~-~~~~~~I~~I~~G~--~h~~~l-t~~~~~G~vy~wG~n~~gqlg~~ 216 (442)
..||.|..|-.... .+. .+. ......+..++... .+.++. .. ||.|..|-.... +
T Consensus 189 s~D~~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~~~-~---- 248 (344)
T 4gqb_B 189 SEDNRILLWDTRCP------------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTKST-S---- 248 (344)
T ss_dssp ETTSCEEEEETTSS------------SCEEECC----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESCC-------
T ss_pred cccccccccccccc------------ceeeeeecceeeccceeeeecCCCCcceEEecc---CCcEEEEECCCC-c----
Confidence 57899999943221 111 111 11123455665532 233443 44 889998833211 0
Q ss_pred CCCCceeecCeEeeccCCCcEEEEEecCC---eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC--CeE
Q 013470 217 KDRIRSVSLPQVTIGLHDIEIVGISANGD---RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW--NHV 291 (442)
Q Consensus 217 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~~---~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~--~~~ 291 (442)
....+.. ....|..++.... +.+.-..||.|++|.... +++ -........|..++... ...
T Consensus 249 --------~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~----~~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 249 --------CVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SEL----FRSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp --------CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEE----EEECCCSSCEEEEEECSSSTTE
T ss_pred --------EEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcE----EEEcCCCCCEEEEEEeCCCCeE
Confidence 1111121 2235777776532 344456899999995432 111 01112345677777542 223
Q ss_pred EE-EECCCcEEEEeC
Q 013470 292 LV-LTGDGEVLMLGG 305 (442)
Q Consensus 292 ~~-l~~~G~vy~~G~ 305 (442)
++ -..||+|..|--
T Consensus 315 las~s~D~~v~~w~v 329 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEEcCCCeEEEEEC
Confidence 33 357899999854
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=67.11 E-value=77 Score=29.04 Aligned_cols=153 Identities=7% Similarity=-0.123 Sum_probs=79.6
Q ss_pred ceEEEEeecC---ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEe-------ecCCCceEEEEeCC---CceEE
Q 013470 126 YTITHISAGW---NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS-------SFVNKNVHQIACGM---RHSLV 192 (442)
Q Consensus 126 ~~i~~vs~G~---~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~-------~~~~~~I~~I~~G~---~h~~~ 192 (442)
..|..++... .+.+.-..||.|..|-....... ......... ......|..++... ...+.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ------SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSS------SCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCccc------ceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 5677777754 44455567999999965432111 110100000 01234677777643 34444
Q ss_pred EEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC-----eEEEEcCCCcEEEeeCCCCCCC
Q 013470 193 LLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD-----RSAALSAEGHLYTWGRGFNSTS 267 (442)
Q Consensus 193 lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~-----~s~~lt~~G~vy~wG~~~~~~~ 267 (442)
-.. +|.|..|-.... . ....+. . ...+..+..... ..++-..+|.|++|-.......
T Consensus 118 ~~~---d~~i~iwd~~~~----------~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 118 SSF---DKTLKVWDTNTL----------Q---TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EET---TSEEEEEETTTT----------E---EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred EeC---CCeEEEeeCCCC----------c---cceecc-C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 555 899999943211 0 001111 1 123444444322 4555678899999976432211
Q ss_pred CCCCccccCCCCCeeEEEeCCC---eEEEEECCCcEEEEeCC
Q 013470 268 DVNCPQSLPSSLSFSQAALGWN---HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 268 ~~~~p~~i~~~~~i~~i~~G~~---~~~~l~~~G~vy~~G~n 306 (442)
.........|..++.... ..+.-..+|.|+.|-..
T Consensus 180 ----~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 180 ----HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp ----EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred ----eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence 111123456777765433 24556788999999654
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=65.91 E-value=92 Score=29.50 Aligned_cols=201 Identities=11% Similarity=0.020 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCce-eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec----CceEEE
Q 013470 66 LSSVSMLACGGAH-VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG----WNHSGF 140 (442)
Q Consensus 66 ~~~i~~I~~G~~h-~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G----~~~s~~ 140 (442)
...|..++..... .+.-.. |+.|..|-.... ..+..+..+...|..++.. ..+.+.
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~-----dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGST-----DRTVRVWDIKKG--------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp SSCEEEEEECSTTEEEEEET-----TSCEEEEETTTT--------------EEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred CcCEEEEEEcCCCEEEEEeC-----CCCEEEEECCCC--------------cEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 3577777765443 333344 899999965321 1222222222456666553 244555
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCC---------CcccceEEee--cCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYR---------SHSSPVKVSS--FVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK 209 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~---------~~~~p~~v~~--~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~ 209 (442)
-..||.|..|-............. ....+..+.. .....+..++......+.-.. +|.|+.|-...
T Consensus 223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---d~~i~vwd~~~ 299 (464)
T 3v7d_B 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY---DNTLIVWDVAQ 299 (464)
T ss_dssp EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET---TSCEEEEETTT
T ss_pred EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC---CCeEEEEECCC
Confidence 678899999975443221110000 0001111111 122456677655566666666 89999984321
Q ss_pred CCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC
Q 013470 210 RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG 287 (442)
Q Consensus 210 ~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G 287 (442)
. . ....+ ......|..++... ...+.-..+|.|++|-....... .........|..++..
T Consensus 300 ~----------~---~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 300 M----------K---CLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM----YTLQGHTALVGLLRLS 361 (464)
T ss_dssp T----------E---EEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEEC
T ss_pred C----------c---EEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE----EEEeCCCCcEEEEEEc
Confidence 1 0 00111 11223566666544 35566678899999965321110 0111234567888887
Q ss_pred CCeEEEEECCCcEEEEeCC
Q 013470 288 WNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~n 306 (442)
..+.+.-..||.|..|-..
T Consensus 362 ~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECC
Confidence 8888888999999999654
No 68
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.62 E-value=77 Score=28.52 Aligned_cols=215 Identities=11% Similarity=0.040 Sum_probs=115.9
Q ss_pred CCcEEEEEeCC--ceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec---CceEEE
Q 013470 66 LSSVSMLACGG--AHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG---WNHSGF 140 (442)
Q Consensus 66 ~~~i~~I~~G~--~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G---~~~s~~ 140 (442)
...+..+.... .+.+++|+ +|++|.--... |.... .. -+ +.++ .+|+.+.+- ..+.++
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~-----~G~v~~~~~~~---lp~~~---~~---~l-l~~~--e~i~~v~~~~~~~~~~v~ 85 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSN-----RGRVYWIAGSQ---ALQGS---KV---SL-KSRE--EKIVGAFIREKFGNRLLL 85 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEET-----TSEEEEECSHH---HHTSE---EC---CC-SSTT--CCEEEEEEGGGSCSEEEE
T ss_pred CCeEEEEEEECCCCEEEEEcC-----CCeEEEEEhhh---CccCc---cc---cc-CCCC--CEEEEEECCcCCCCEEEE
Confidence 34555554443 45889999 99999864321 10000 00 03 2233 678888662 246788
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe--CCCceEEEEeecCCCeeeeeCCCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKD 218 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~--G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~ 218 (442)
+|.+|.+.-.-...+-+- ..-...+..-+++.++.+.. +.++.+++|+ +|++|.+-..+.-.+|+...
T Consensus 86 ~T~~G~iKr~~l~~~~~~-------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~---~G~~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 86 ATKKGYVKKIPLAEFEYK-------AQGMPIIKLTEGDEVVSIASSVDETHILLFTK---KGRVARFSVREVPPSTPGAR 155 (276)
T ss_dssp EETTSEEEEEEGGGTTTC-------STTEECSCCCTTCCEEEEEECCSSCEEEEEET---TSEEEEEEGGGSCBCCTTCC
T ss_pred EeCCCEEEEEEHHHhhhh-------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEEC---CCEEEEEEhhhCCCcCCCCC
Confidence 899998877654333210 00111112223345655543 4556888899 99999886555444444321
Q ss_pred CCceeecCeEeeccCCCcEEEEEec--CCeEEEEcCCCcEEEeeCCCCCCCCCC--CccccCCCCCeeEEE--eCCCeEE
Q 013470 219 RIRSVSLPQVTIGLHDIEIVGISAN--GDRSAALSAEGHLYTWGRGFNSTSDVN--CPQSLPSSLSFSQAA--LGWNHVL 292 (442)
Q Consensus 219 ~~~~~~~p~~v~~~~~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~~~~~~--~p~~i~~~~~i~~i~--~G~~~~~ 292 (442)
.... +...++.+|+.+... ..+.+++|++|.+...-...+...... --..+....++..+. .+....+
T Consensus 156 Gv~~------i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~ 229 (276)
T 3no0_A 156 GVQG------IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELL 229 (276)
T ss_dssp CEEC------CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEE
T ss_pred CEEE------EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEE
Confidence 1111 111234567766544 346778899998777654333221110 000112344555543 3456788
Q ss_pred EEECCCcEEE--EeCCCCcccCC
Q 013470 293 VLTGDGEVLM--LGGSHHGMLSD 313 (442)
Q Consensus 293 ~l~~~G~vy~--~G~n~~gqlG~ 313 (442)
+++++|++.. +-.+..-.+|.
T Consensus 230 ~~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 230 ITTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp EEETTSCEEEEEEEGGGSCBCCT
T ss_pred EEcCCCeEEEeeeCHHHCCCcCC
Confidence 8999999988 76655444443
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=65.54 E-value=83 Score=28.87 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=98.8
Q ss_pred CcEEEEEeCCce---eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC---ceEEE
Q 013470 67 SSVSMLACGGAH---VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW---NHSGF 140 (442)
Q Consensus 67 ~~i~~I~~G~~h---~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~---~~s~~ 140 (442)
..|..++..... .+.-.. |+.|..|-..... ....+. .......|..++... ...+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~-----------~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK-----GGDIILWDYDVQN-----------KTSFIQ-GMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB-----TSCEEEEETTSTT-----------CEEEEC-CCSTTCBEEEEEEETTEEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcC-----CCeEEEEeCCCcc-----------cceeee-cCCcCCceeEEEeCCCCCCEEEE
Confidence 467777765543 333334 7889998654211 011111 111224577777644 44555
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecC--CCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV--NKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVS 216 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~ 216 (442)
...||.|..|-... .....+.... ...|..++...+ ..+.-.. +|.|+.|-.. ++
T Consensus 137 ~~~d~~i~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~--~~---- 195 (383)
T 3ei3_B 137 SSIRGATTLRDFSG------------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS---TGRLLLLGLD--GH---- 195 (383)
T ss_dssp EETTTEEEEEETTS------------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET---TSEEEEEETT--SC----
T ss_pred EeCCCEEEEEECCC------------CceEEEeccCCCCCCeEEEEECCCCCEEEEECC---CCCEEEEECC--CC----
Confidence 56789999996431 0111111111 134666655433 3333344 8899998531 00
Q ss_pred CCCCceeecCeEeeccCCCcEEEEEecCC---eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC---Ce
Q 013470 217 KDRIRSVSLPQVTIGLHDIEIVGISANGD---RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW---NH 290 (442)
Q Consensus 217 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~~---~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~---~~ 290 (442)
....+. .....|..++.... ..+.-..+|.|++|-.......... ...+.....|..++... .+
T Consensus 196 --------~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 196 --------EIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY-IAEMPHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp --------EEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EEEEECSSCEEEEEECTTTSCE
T ss_pred --------EEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce-EEEecCCCceEEEEEcCCCCCE
Confidence 001111 12235777766544 3444567889999976432211111 11123455677777644 55
Q ss_pred EEEEECCCcEEEEeCC
Q 013470 291 VLVLTGDGEVLMLGGS 306 (442)
Q Consensus 291 ~~~l~~~G~vy~~G~n 306 (442)
.+....+|.|+.|-..
T Consensus 266 l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEESSSEEEEEETT
T ss_pred EEEEcCCCcEEEEECC
Confidence 5666778999999654
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=64.86 E-value=79 Score=28.39 Aligned_cols=160 Identities=8% Similarity=-0.033 Sum_probs=73.6
Q ss_pred CcEEEEEeCC--ceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEE
Q 013470 67 SSVSMLACGG--AHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVS 142 (442)
Q Consensus 67 ~~i~~I~~G~--~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt 142 (442)
..|..++... .+.+.... |+.|+.|-..... ....+... ..+..++... .+.++..
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~-----------~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSA-----DYSIKLWDVSNGQ-----------CVATWKSP----VPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TTEEEEEETTTCC-----------EEEEEECS----SCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCc-----------EEEEeecC----CCeEEEEEccCCCEEEEec
Confidence 4677777653 33444455 8999999654211 01111111 2355554433 3444445
Q ss_pred eC-----CCEEEeCCCCCcccCCCCCCCcccceEEeec-CCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCC
Q 013470 143 DS-----GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSF-VNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLG 214 (442)
Q Consensus 143 ~~-----g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~-~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg 214 (442)
.+ |.|+.|-.........-..........+... ....+..++...+ ..++-.. +|.|+.|-....+
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~--- 208 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK---DGKISKYDVSNNY--- 208 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET---TSEEEEEETTTTT---
T ss_pred CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC---CCEEEEEECCCCc---
Confidence 55 7888886432211100000000011111111 1125666655433 3333344 8899998432210
Q ss_pred CCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCC
Q 013470 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRG 262 (442)
Q Consensus 215 ~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~ 262 (442)
.+..........|..++.... +.++-..+|.|++|-..
T Consensus 209 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 209 ----------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ----------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ----------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 011111112335666665433 44555678999999653
No 71
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.01 E-value=90 Score=28.06 Aligned_cols=141 Identities=16% Similarity=0.048 Sum_probs=81.6
Q ss_pred eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeC--CCceEEEEeecCCCeeeeeCCCCCCCCC
Q 013470 137 HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG--MRHSLVLLKDCLGNQVYGFGSGKRGQLG 214 (442)
Q Consensus 137 ~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G--~~h~~~lt~~~~~G~vy~wG~n~~gqlg 214 (442)
-+++|+++|-|-.-- |+.. .++.+..+... .++.+++|+ +|++|..-..+.-.
T Consensus 3 vtvils~~Gwir~~~-------g~~~-------------~gD~~~~~~~~~t~~~ll~fT~---~G~v~~~~~~~lp~-- 57 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL-------------EKAPVVNILRVPFTEGLFLVSN---RGRVYWIAGSQALQ-- 57 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS-------------SCCCEEEEEEEETTSCEEEEET---TSEEEEECSHHHHT--
T ss_pred EEEEEcCCceeeecc-------CCCC-------------CCCeEEEEEEECCCCEEEEEcC---CCeEEEEEhhhCcc--
Confidence 467888888776432 2111 34556665544 445888999 99999753211100
Q ss_pred CCCCCCceeecCeEeeccCCCcEEEEEec---CCeEEEEcCCCcEEEeeCCCCCCCCC-CCccccCCCCCeeEEEe--CC
Q 013470 215 VSKDRIRSVSLPQVTIGLHDIEIVGISAN---GDRSAALSAEGHLYTWGRGFNSTSDV-NCPQSLPSSLSFSQAAL--GW 288 (442)
Q Consensus 215 ~~~~~~~~~~~p~~v~~~~~~~i~~i~~g---~~~s~~lt~~G~vy~wG~~~~~~~~~-~~p~~i~~~~~i~~i~~--G~ 288 (442)
.. ... + ..++++|+.+.+- ..+.+.+|++|.+...-...+.+... ..-..+..+..+..+.. +.
T Consensus 58 ----~~-~~~----l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~ 127 (276)
T 3no0_A 58 ----GS-KVS----L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDE 127 (276)
T ss_dssp ----SE-ECC----C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSS
T ss_pred ----Cc-ccc----c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCC
Confidence 00 000 2 2245678888762 24688899999988776544321110 01112234556666544 45
Q ss_pred CeEEEEECCCcEEEEeCCCCcccC
Q 013470 289 NHVLVLTGDGEVLMLGGSHHGMLS 312 (442)
Q Consensus 289 ~~~~~l~~~G~vy~~G~n~~gqlG 312 (442)
.+.++++++|++|.+-....-.+|
T Consensus 128 ~~ill~T~~G~~~r~~~~eip~~g 151 (276)
T 3no0_A 128 THILLFTKKGRVARFSVREVPPST 151 (276)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CEEEEEECCCEEEEEEhhhCCCcC
Confidence 568899999999999765544443
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=60.96 E-value=99 Score=28.17 Aligned_cols=113 Identities=10% Similarity=-0.048 Sum_probs=57.3
Q ss_pred CceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCC
Q 013470 178 KNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAE 253 (442)
Q Consensus 178 ~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~ 253 (442)
..|..++...+ ..+.-.. +|.|+.|-..... ...+..........|..++... ...+.-..+
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~---d~~v~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 121 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQ---DRNAYVYEKRPDG-----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA 121 (377)
T ss_dssp SCEEEEEECTTTCCEEEEET---TSSEEEC-----------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS
T ss_pred ceEEEEEEeCCCCEEEEEeC---CCeEEEEEcCCCC-----------ceeeeeEecccCCceEEEEECCCCCEEEEEecC
Confidence 45777766543 3333444 7899998543211 0011111111233566666543 345556778
Q ss_pred CcEEEeeCCCCCCCCCCCccccC--CCCCeeEEEeCC--CeEEEEECCCcEEEEeCC
Q 013470 254 GHLYTWGRGFNSTSDVNCPQSLP--SSLSFSQAALGW--NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 254 G~vy~wG~~~~~~~~~~~p~~i~--~~~~i~~i~~G~--~~~~~l~~~G~vy~~G~n 306 (442)
|.|++|-......... ...+. ....|..++... ...+.-..||.|+.|-..
T Consensus 122 ~~i~iwd~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 122 RVISVCYFEQENDWWV--SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp SCEEECCC-----CCC--CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred CeEEEEEECCccccee--eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 9999996543321111 11222 355677777643 345556788999999754
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=60.14 E-value=1e+02 Score=28.13 Aligned_cols=202 Identities=16% Similarity=0.081 Sum_probs=103.2
Q ss_pred CCCcEEEEEeCC---ceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEee-----ecCCCcceEEEEeec--
Q 013470 65 SLSSVSMLACGG---AHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVT-----FFDGHRYTITHISAG-- 134 (442)
Q Consensus 65 ~~~~i~~I~~G~---~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~-----~~~~~~~~i~~vs~G-- 134 (442)
....|..++... ...+.-.. ||.|..|-........ ........ .+..+...|..++..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGS-----DGVIVLYDLENSSRQS------YYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEET-----TSCEEEEECCCCSSSS------CEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred cCCcEEEEEEecCCCCEEEEEcC-----CCeEEEEECCCCcccc------eEeccccccccccccccCCCcEEEEEEccC
Confidence 345788888754 33334445 8999999755322211 11111100 011122457777763
Q ss_pred -CceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC-----ceEEEEeecCCCeeeeeCCC
Q 013470 135 -WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR-----HSLVLLKDCLGNQVYGFGSG 208 (442)
Q Consensus 135 -~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~-----h~~~lt~~~~~G~vy~wG~n 208 (442)
....+....||.|..|-.... .+..... ....+..+..... ..++-.. +|.|+.|-..
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~d~~ 174 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTL------------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR---GPKVQLCDLK 174 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTT------------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES---SSSEEEEESS
T ss_pred CCcEEEEEeCCCeEEEeeCCCC------------ccceecc-CCCceeeeEeecCCCCCcEEEEEcC---CCeEEEEeCC
Confidence 345556677899999954321 1111111 1234555554332 2333344 8899998542
Q ss_pred CCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCe---EEEEcCCCcEEEeeCCCCCCCCC----------CCccc-
Q 013470 209 KRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDR---SAALSAEGHLYTWGRGFNSTSDV----------NCPQS- 274 (442)
Q Consensus 209 ~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~---s~~lt~~G~vy~wG~~~~~~~~~----------~~p~~- 274 (442)
... ....+. .....|..++..... .+.-..+|.|++|-.......-. .....
T Consensus 175 ~~~-------------~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 175 SGS-------------CSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp SSC-------------CCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred Ccc-------------eeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 211 011111 122356666655442 44567899999997643321100 00000
Q ss_pred -cCCCCCeeEEEeC--CCeEEEEECCCcEEEEeCCC
Q 013470 275 -LPSSLSFSQAALG--WNHVLVLTGDGEVLMLGGSH 307 (442)
Q Consensus 275 -i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~n~ 307 (442)
......|..++.. ..+.+....+|.|+.|-...
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 1234567777764 34566677899999997554
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=59.82 E-value=1.1e+02 Score=28.33 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=33.8
Q ss_pred eEEEEcCCCcEEEeeCCCCCCCCCCCccccC--CCCCeeEEEeCCC---eEEEEECCCcEEEEeCC
Q 013470 246 RSAALSAEGHLYTWGRGFNSTSDVNCPQSLP--SSLSFSQAALGWN---HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 246 ~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~--~~~~i~~i~~G~~---~~~~l~~~G~vy~~G~n 306 (442)
+.++-..+|.|++|-...... ...+. ....|..++.... +.+.-..+|.|+.|-..
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp EEEEEETTSCEEEEETTTCCE-----EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCce-----eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 344456788899996532211 11111 2346777776543 56666788999999643
No 75
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=58.30 E-value=1e+02 Score=27.60 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=12.8
Q ss_pred CCceEEEEeecCCCeeeeeCCC
Q 013470 187 MRHSLVLLKDCLGNQVYGFGSG 208 (442)
Q Consensus 187 ~~h~~~lt~~~~~G~vy~wG~n 208 (442)
..|+++. - +++||.+|-.
T Consensus 140 ~~~~~~~-~---~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-H---MDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-E---TTEEEEECCB
T ss_pred cceeEEE-E---CCEEEEEeCC
Confidence 3566666 4 5899999864
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=57.63 E-value=1.2e+02 Score=28.26 Aligned_cols=59 Identities=7% Similarity=-0.090 Sum_probs=32.0
Q ss_pred CceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeec-CCCceEEEEeCCCc-eEE-EEeecCCCeeeeeCC
Q 013470 135 WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSF-VNKNVHQIACGMRH-SLV-LLKDCLGNQVYGFGS 207 (442)
Q Consensus 135 ~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~-~~~~I~~I~~G~~h-~~~-lt~~~~~G~vy~wG~ 207 (442)
....+.-+.||.|+.|-.... .....+... ....|..++...+. .++ -.. +|.|..|-.
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~ 243 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTL-----------ERLQIIENSPRHGAVSSICIDEECCVLILGTT---RGIIDIWDI 243 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTC-----------CEEEEEECCGGGCCEEEEEECTTSCEEEEEET---TSCEEEEET
T ss_pred CCEEEEEeCCCeEEEEeCCCC-----------eeeEEEccCCCCCceEEEEECCCCCEEEEEcC---CCeEEEEEc
Confidence 445555677899999954321 011111111 22468888775443 233 344 888999843
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=57.03 E-value=1.1e+02 Score=27.53 Aligned_cols=199 Identities=10% Similarity=-0.049 Sum_probs=93.8
Q ss_pred CcEEEEEeCCce-eEEEe-CCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec--CceEEEEE
Q 013470 67 SSVSMLACGGAH-VLALT-SPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG--WNHSGFVS 142 (442)
Q Consensus 67 ~~i~~I~~G~~h-~~~lt-~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G--~~~s~~lt 142 (442)
..|..++..... .++.. . |+.|+.|-.... ....+..+..+...|..++.. ..+.+...
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPN-----NHEVHIYEKSGN------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp SCCCEEEECTTSSEEEEECS-----SSEEEEEEEETT------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCC------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence 456666654332 23333 5 888999864221 011222222222457666654 34445556
Q ss_pred eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCC
Q 013470 143 DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI 220 (442)
Q Consensus 143 ~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~ 220 (442)
.||.|+.|-.... ...+..........|..++...+ ..+.-.. +|.|+.|-.....
T Consensus 72 ~dg~i~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~--------- 129 (372)
T 1k8k_C 72 TDRNAYVWTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQEN--------- 129 (372)
T ss_dssp TTSCEEEEEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEET---TSSEEEEEEETTT---------
T ss_pred CCCeEEEEECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCEEEEEEecCCC---------
Confidence 7889998853211 00111111112245777766533 2333334 7888887432110
Q ss_pred ceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCC------------CCCCccc-c-CCCCCeeEE
Q 013470 221 RSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNSTS------------DVNCPQS-L-PSSLSFSQA 284 (442)
Q Consensus 221 ~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~------------~~~~p~~-i-~~~~~i~~i 284 (442)
.......+.......|..++.... ..+.-..+|.|++|-....... ....+.. + .....|..+
T Consensus 130 -~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 130 -DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 208 (372)
T ss_dssp -TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred -cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence 000111111112345777665433 4455567999999974311100 0001111 1 123456666
Q ss_pred EeC--CCeEEEEECCCcEEEEeC
Q 013470 285 ALG--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 285 ~~G--~~~~~~l~~~G~vy~~G~ 305 (442)
+.. ..+.+....+|.|+.|-.
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEG
T ss_pred EECCCCCEEEEEeCCCEEEEEEC
Confidence 653 335555667788888754
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=56.83 E-value=1e+02 Score=27.10 Aligned_cols=121 Identities=7% Similarity=-0.123 Sum_probs=62.9
Q ss_pred CcEEEEEeCCce--eEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC----ceEEE
Q 013470 67 SSVSMLACGGAH--VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW----NHSGF 140 (442)
Q Consensus 67 ~~i~~I~~G~~h--~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~----~~s~~ 140 (442)
..|..++..... .+.-.. ||.|..|-..... .....+..+..+...|..++... ...+.
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSS-----DQHIKVFKLDKDT----------SNWELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp SCEEEEEECSSSSEEEEEET-----TSEEEEEEECSSS----------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred cceeEEEEcCCCCEEEEeeC-----CCeEEEEECCCCC----------CcceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 467777754433 333344 8999999654211 11122222223335688887643 44555
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC----ceEEEEeecCCCeeeeeCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR----HSLVLLKDCLGNQVYGFGSG 208 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~----h~~~lt~~~~~G~vy~wG~n 208 (442)
...||.|..|-........ ......+..........|..++...+ ..+.... +|.|+.|-..
T Consensus 77 ~~~dg~v~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iwd~~ 142 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEEC---SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN---DGILRLYDAL 142 (351)
T ss_dssp EETTSCEEEEEECTTSCTT---SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TCEEEEEECS
T ss_pred EcCCCeEEEEecCCCcccc---cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC---CCcEEEecCC
Confidence 5788999999644321100 00000111111122356888887654 3444455 8999999543
No 79
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=55.47 E-value=1.2e+02 Score=27.27 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=11.7
Q ss_pred ceEEEEEeCCCEEEeCCC
Q 013470 136 NHSGFVSDSGCLFTCGDG 153 (442)
Q Consensus 136 ~~s~~lt~~g~vy~~G~n 153 (442)
.|+++. -+++||++|-.
T Consensus 141 ~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEEeCC
Confidence 455444 67899999953
No 80
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=55.24 E-value=1.3e+02 Score=27.76 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=34.6
Q ss_pred cEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCC--ccccC-CCCCeeEEEe--CCCeEEEEECCCcEEEEeC
Q 013470 236 EIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNC--PQSLP-SSLSFSQAAL--GWNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 236 ~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~--p~~i~-~~~~i~~i~~--G~~~~~~l~~~G~vy~~G~ 305 (442)
.|..++... .+.+.-..||.|.+|......++.... +.... ....|..++. ...+.++-..+|.|+.|-.
T Consensus 251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 455554443 344445678999999764322211100 00000 0112344443 3455556667888988853
No 81
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=55.23 E-value=1.8e+02 Score=29.45 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=37.9
Q ss_pred ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEe----CCCceEEE-EeecCCCeeeeeCCCCC
Q 013470 136 NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC----GMRHSLVL-LKDCLGNQVYGFGSGKR 210 (442)
Q Consensus 136 ~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~----G~~h~~~l-t~~~~~G~vy~wG~n~~ 210 (442)
.|++++..+|+||+.|-...+.. .........+.... +...+...+.. -..|++++ .. +|+||..|.+..
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~---dg~v~v~GG~~~ 532 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLP---DGRVFNGGGGLC 532 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECT---TSCEEEEECCCC
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCC---CcEEEecCCCCC
Confidence 56777777999999996443321 11111122222222 22223333321 24576554 45 799999998755
Q ss_pred C
Q 013470 211 G 211 (442)
Q Consensus 211 g 211 (442)
+
T Consensus 533 ~ 533 (656)
T 1k3i_A 533 G 533 (656)
T ss_dssp T
T ss_pred C
Confidence 4
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=55.10 E-value=1.4e+02 Score=28.11 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec---CceEEEEEeCCCEEEeCCCCCcccCCCCCCCc
Q 013470 90 GGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG---WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSH 166 (442)
Q Consensus 90 dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G---~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~ 166 (442)
||.|..|-.+...... ....+. ..+..+...|..|+.. ....+....+|.|+.|-..... .
T Consensus 203 dg~i~vwd~~~~~~~~-----~~~~~~--~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~---------~ 266 (430)
T 2xyi_A 203 DHTICLWDINATPKEH-----RVIDAK--NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN---------T 266 (430)
T ss_dssp TSCEEEEETTSCCBGG-----GEEECS--EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC---------S
T ss_pred CCeEEEEeCCCCCCCC-----ceeccc--eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC---------C
Confidence 8899999865422110 111111 1111222457777764 3444455679999999654311 0
Q ss_pred ccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC
Q 013470 167 SSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG 244 (442)
Q Consensus 167 ~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~ 244 (442)
..+..........|..|+...+ +.++.... +|.|..|-.....+ +..........|..++...
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~--dg~v~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSA--DKTVALWDLRNLKL-------------KLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTS-------------CSEEEECCSSCEEEEEECS
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeC--CCeEEEEeCCCCCC-------------CeEEeecCCCCEEEEEECC
Confidence 1121111122345777776543 33444332 89999995432211 1111111234677776654
Q ss_pred Ce---EEEEcCCCcEEEeeCCCCCCCCC------CCcccc--C--CCCCeeEEEeCCC---eEEEEECCCcEEEEeCC
Q 013470 245 DR---SAALSAEGHLYTWGRGFNSTSDV------NCPQSL--P--SSLSFSQAALGWN---HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 245 ~~---s~~lt~~G~vy~wG~~~~~~~~~------~~p~~i--~--~~~~i~~i~~G~~---~~~~l~~~G~vy~~G~n 306 (442)
.. .+.-..+|.|.+|-....+.... ..+..+ . ....|..++.... ..+....+|.|..|-..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 32 44456789999997654332111 001111 1 2345777776543 45556778888888643
No 83
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=54.66 E-value=82 Score=25.30 Aligned_cols=108 Identities=11% Similarity=-0.077 Sum_probs=60.4
Q ss_pred CCCceEEEEeCC-CceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEec-CCeEEEEcCC
Q 013470 176 VNKNVHQIACGM-RHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN-GDRSAALSAE 253 (442)
Q Consensus 176 ~~~~I~~I~~G~-~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g-~~~s~~lt~~ 253 (442)
+....+++.|-. .+-+-+.. ||.|-+-.... ..........+. ..++.|.|- ..+-+++..+
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~---dG~V~Gt~~~~---------~~~s~lei~sv~----~G~V~L~g~~sg~yL~mn~~ 91 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINP---DGTVDGTRDRS---------DTHIQFQISPEG----NGEVLLKSTETGQYLRINPD 91 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECT---TSBEEEECCTT---------CGGGCEEEEEEE----TTEEEEEETTTTEEEEECTT
T ss_pred ccCcEEEEEEeCCCEEEEECC---CCCEeeecCCC---------CCceEEEEEEcc----CCEEEEEEecCCEEEeECCC
Confidence 446789999965 45566667 79998664321 111111111111 247888876 5688999999
Q ss_pred CcEEEeeCCCCCCCCCCCccccCCCCCeeEEE-eCCCeEEEEECCCcEEE
Q 013470 254 GHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAA-LGWNHVLVLTGDGEVLM 302 (442)
Q Consensus 254 G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~-~G~~~~~~l~~~G~vy~ 302 (442)
|+||.--. ... ....-..++...-.+.+. .-....+|+.++|++|.
T Consensus 92 G~l~Gs~~--~t~-ecsflEi~~en~y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 92 GTVDGTRD--RSD-THIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp SBEEEECC--TTC-GGGCEEEEECSTTCEEEEETTTCCEEEECTTSBEEE
T ss_pred CCEeeccc--CCC-CceEEEEEeecCcEEEEEEecCCEEEEECCCcCCcc
Confidence 99997522 111 111111122222222232 22345899999999996
No 84
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=54.46 E-value=1.3e+02 Score=27.70 Aligned_cols=224 Identities=10% Similarity=-0.007 Sum_probs=118.8
Q ss_pred CcEEEE--EeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC-----ceEE
Q 013470 67 SSVSML--ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW-----NHSG 139 (442)
Q Consensus 67 ~~i~~I--~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~-----~~s~ 139 (442)
..+..+ +....+.+++|+ .|++|..-...--..+... .-......+.+.++ .+|+.+.+.. .+.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~-----~Gr~y~~~~~~lp~~~r~~-~G~~i~~~l~l~~~--e~i~~~~~~~~~~~e~~~v 113 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTT-----QGRVYRAKAYDLPEASRTA-RGQHVANLLAFQPE--ERIAQVIQIRGYTDAPYLV 113 (327)
T ss_dssp GCEEEEEEEETTSEEEEEET-----TSEEEEEEGGGSCBCCSSS-CCEEHHHHTTCCTT--CCEEEEEEESSTTSSSEEE
T ss_pred CEEEEEEEeCCCCEEEEEeC-----CCeEEEEEHHHCcCCCccC-CCEEHHHccCCCCC--CEEEEEEEeccCCCCCEEE
Confidence 344443 455666788999 9999998754322221111 01111122333344 6788876654 4678
Q ss_pred EEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEE--EeCCCceEEEEeecCCCeeeeeCCC--CCCCCCC
Q 013470 140 FVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQI--ACGMRHSLVLLKDCLGNQVYGFGSG--KRGQLGV 215 (442)
Q Consensus 140 ~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I--~~G~~h~~~lt~~~~~G~vy~wG~n--~~gqlg~ 215 (442)
++|++|.+.-.-...+-... ..--..+..-++..++.+ +.+.++.+++|+ +|++|-+-.. +--..|+
T Consensus 114 ~~T~~G~iKr~~l~~~~~~~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~---~G~~~rf~~~~~eip~~gr 184 (327)
T 3uc1_A 114 LATRNGLVKKSKLTDFDSNR------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSA---NGQSIRFSATDEALRPMGR 184 (327)
T ss_dssp EEETTSEEEEEEGGGGCCCC------SSCEESCBCCTTCCEEEEEEECTTCEEEEEET---TSEEEEEECCTTTSCCCCT
T ss_pred EEcCCCEEEEeEHHHhhccc------cCceEEEEECCCCEEEEEEEecCCCEEEEEEC---CCeEEEEECcccccCcCCc
Confidence 88999988766433321100 000011111123445443 346677899999 9999988766 4444444
Q ss_pred CCCCCceeecCeEeeccCCCcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCC-----CCCCCccccCCCCCeeEEE--e
Q 013470 216 SKDRIRSVSLPQVTIGLHDIEIVGISANG--DRSAALSAEGHLYTWGRGFNST-----SDVNCPQSLPSSLSFSQAA--L 286 (442)
Q Consensus 216 ~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~-----~~~~~p~~i~~~~~i~~i~--~ 286 (442)
...... .+...++.+|+.+..-. .+.+.+|++|.+...-...+.. .+...-........+..+. .
T Consensus 185 ~a~Gv~------~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~ 258 (327)
T 3uc1_A 185 ATSGVQ------GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVD 258 (327)
T ss_dssp TSBCEE------SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEEC
T ss_pred CCCCee------eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeC
Confidence 321111 11122345677766543 3677888888766654322211 1111111111123454443 3
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcccCC
Q 013470 287 GWNHVLVLTGDGEVLMLGGSHHGMLSD 313 (442)
Q Consensus 287 G~~~~~~l~~~G~vy~~G~n~~gqlG~ 313 (442)
+....++++++|++.-+-....-.+|.
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred CCccEEEEcCCCeEEEEehhhccccCC
Confidence 567889999999999886655444444
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=53.10 E-value=1.5e+02 Score=27.91 Aligned_cols=199 Identities=9% Similarity=-0.044 Sum_probs=103.0
Q ss_pred EEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCc-eEEEEEeCCCE
Q 013470 69 VSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN-HSGFVSDSGCL 147 (442)
Q Consensus 69 i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~-~s~~lt~~g~v 147 (442)
+..++......+.-.. ||.|..|-... ...+..+..+...|..++.... ..+.-..||.|
T Consensus 125 ~~~~~~~~~~l~sgs~-----dg~i~vwd~~~--------------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i 185 (464)
T 3v7d_B 125 ITCLQFEDNYVITGAD-----DKMIRVYDSIN--------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTV 185 (464)
T ss_dssp EEEEEEETTEEEEEET-----TSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCE
T ss_pred EEEEEECCCEEEEEcC-----CCcEEEEECCC--------------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCE
Confidence 3445555555555566 89999997432 1233333333456887776544 44455688999
Q ss_pred EEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeC---C-CceEEEEeecCCCeeeeeCCCCCCCCCCCCC---CC
Q 013470 148 FTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG---M-RHSLVLLKDCLGNQVYGFGSGKRGQLGVSKD---RI 220 (442)
Q Consensus 148 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G---~-~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~---~~ 220 (442)
..|-..... ....+. .....|..++.. . ...+.-.. +|.|..|-............ ..
T Consensus 186 ~vwd~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~ 250 (464)
T 3v7d_B 186 RVWDIKKGC-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSR---DNTLHVWKLPKESSVPDHGEEHDYP 250 (464)
T ss_dssp EEEETTTTE-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEET---TSCEEEEECCCCCCC------CCSS
T ss_pred EEEECCCCc-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcC---CCcEEEeeCCCCcccccccccCCcc
Confidence 999643211 011111 122356555543 2 23333444 89999996543322211000 00
Q ss_pred cee----ecC--eEeeccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEE
Q 013470 221 RSV----SLP--QVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVL 292 (442)
Q Consensus 221 ~~~----~~p--~~v~~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~ 292 (442)
... ..+ ..........+..+.......+.-..+|.|++|........ .........|..++.. ....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 251 LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL----YILSGHTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp EEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE----EEECCCSSCEEEEEEETTTTEEE
T ss_pred eEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEecCCCCCEEEEEEcCCCCEEE
Confidence 000 001 11111123457777777777788889999999965321110 0011124456666554 34566
Q ss_pred EEECCCcEEEEeC
Q 013470 293 VLTGDGEVLMLGG 305 (442)
Q Consensus 293 ~l~~~G~vy~~G~ 305 (442)
.-..||.|+.|-.
T Consensus 327 sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 327 SASMDTTIRIWDL 339 (464)
T ss_dssp EEETTSCEEEEET
T ss_pred EEeCCCcEEEEEC
Confidence 6678889999864
No 86
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=52.59 E-value=1.2e+02 Score=26.76 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=12.9
Q ss_pred cEEEEEecCCeEEEEcCC-Cc-EEEee
Q 013470 236 EIVGISANGDRSAALSAE-GH-LYTWG 260 (442)
Q Consensus 236 ~i~~i~~g~~~s~~lt~~-G~-vy~wG 260 (442)
.+.-........++++.+ |+ +|-++
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 444333333456677766 66 44444
No 87
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=52.46 E-value=1.3e+02 Score=26.89 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=12.2
Q ss_pred CCeEEEEECCCcEEEEeC
Q 013470 288 WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 288 ~~~~~~l~~~G~vy~~G~ 305 (442)
..|+++.. +++||.+|-
T Consensus 160 ~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 160 IGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceEEEEE-CCEEEEEeC
Confidence 35566655 789999984
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=51.44 E-value=2.7e+02 Score=30.38 Aligned_cols=151 Identities=10% Similarity=-0.075 Sum_probs=73.4
Q ss_pred eEEEEeecCc-eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC--ceEEEEeecCCCeee
Q 013470 127 TITHISAGWN-HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR--HSLVLLKDCLGNQVY 203 (442)
Q Consensus 127 ~i~~vs~G~~-~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~--h~~~lt~~~~~G~vy 203 (442)
.+..++.... ..+....+|.|+.|-..... ....+.. ....|..++...+ ..+.-.. +|.|+
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~-~~~~v~~~~~s~d~~~l~s~s~---d~~v~ 1110 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-----------IERDFTC-HQGTVLSCAISSDATKFSSTSA---DKTAK 1110 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTTC-----------CCEEEEC-CSSCCCCEEECSSSSSCEEECC---SSCCC
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCCc-----------eeEEEcc-cCCcEEEEEECCCCCEEEEEcC---CCcEE
Confidence 4555554433 34555678899999643210 1111111 1233555544333 3333344 78888
Q ss_pred eeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCCCcccc-----C
Q 013470 204 GFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVNCPQSL-----P 276 (442)
Q Consensus 204 ~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i-----~ 276 (442)
.|-......+. .+. .....|..++.... ..+.-..+|.|++|-...........|... .
T Consensus 1111 iwd~~~~~~~~-------------~l~-~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1176 (1249)
T 3sfz_A 1111 IWSFDLLSPLH-------------ELK-GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1176 (1249)
T ss_dssp EECSSSSSCSB-------------CCC-CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------
T ss_pred EEECCCcceee-------------eec-cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccc
Confidence 88543211110 001 11234666655444 344446789999997654333322222211 1
Q ss_pred CCCCeeEEEeCCCeEEEEECCCcEEEEeCC
Q 013470 277 SSLSFSQAALGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 277 ~~~~i~~i~~G~~~~~~l~~~G~vy~~G~n 306 (442)
....|..++...+...+++.+|.|..|-..
T Consensus 1177 ~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1177 HGGWVTDVCFSPDSKTLVSAGGYLKWWNVA 1206 (1249)
T ss_dssp CCSCCCEEEECTTSSCEEEESSSEEEBCSS
T ss_pred cCceEEEEEECCCCCEEEECCCeEEEEECC
Confidence 334566766654444444445788888543
No 89
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=51.16 E-value=1.5e+02 Score=27.29 Aligned_cols=125 Identities=10% Similarity=-0.022 Sum_probs=71.1
Q ss_pred EEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC-----CeEEEEcCCCcEE
Q 013470 183 IACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG-----DRSAALSAEGHLY 257 (442)
Q Consensus 183 I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~s~~lt~~G~vy 257 (442)
++.+.++.+++|+ .|++|.+-..+.-..++. ..-.+....+...++.+|+.+..-. .+.+++|++|.+.
T Consensus 46 ~~~t~d~ll~fT~---~Gr~~~~~~~elp~~~r~---a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 46 EMNTKDVLLLFTN---KGNYLYCPVHELPDIRWK---DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEETTSEEEEEET---TSEEEEEEGGGSCBCCTT---SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EECCCCEEEEEEC---CCEEEEEEHHHCcCCCCC---CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 4556778999999 999998754332222221 1112222223323455677765443 3578889999888
Q ss_pred EeeCCCCCCCC--C-CCccccCCCCCeeEEE--eCCCeEEEEECCCcEEEEeCCCCcccCC
Q 013470 258 TWGRGFNSTSD--V-NCPQSLPSSLSFSQAA--LGWNHVLVLTGDGEVLMLGGSHHGMLSD 313 (442)
Q Consensus 258 ~wG~~~~~~~~--~-~~p~~i~~~~~i~~i~--~G~~~~~~l~~~G~vy~~G~n~~gqlG~ 313 (442)
-.-...+.... . ..-..+..+..+..+. .+..+.++++++|+++.+-.+..-.+|.
T Consensus 120 rt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR 180 (323)
T 1wp5_A 120 KTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV 180 (323)
T ss_dssp EEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred EeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 76553322211 0 0011122334555433 3677899999999999987765444443
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=50.62 E-value=1.6e+02 Score=27.48 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=89.3
Q ss_pred CCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEEeCCCEEEeCC
Q 013470 75 GGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDSGCLFTCGD 152 (442)
Q Consensus 75 G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~g~vy~~G~ 152 (442)
+....+++.- |+.||.|-.... + ...+..+..+...|..|+... .+.+.-+.||.|..|-.
T Consensus 114 S~~n~lAvgl-----d~tV~lWd~~tg-~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 114 SSGNVLAVAL-----DNSVYLWSASSG-D-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp CTTSEEEEEE-----TTEEEEEETTTC-C-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEe-----CCEEEEEECCCC-C-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 3456778877 999999975431 1 111111222223577776654 34444578999999964
Q ss_pred CCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeecc
Q 013470 153 GTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL 232 (442)
Q Consensus 153 n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~ 232 (442)
.....+ ..+. .....+..++......+.-.. ++.++.|-..... . ....+..
T Consensus 177 ~~~~~~-----------~~~~-~h~~~v~~~s~~~~~l~sgs~---d~~i~~~d~~~~~---------~---~~~~~~~- 228 (420)
T 4gga_A 177 QQQKRL-----------RNMT-SHSARVGSLSWNSYILSSGSR---SGHIHHHDVRVAE---------H---HVATLSG- 228 (420)
T ss_dssp TTTEEE-----------EEEC-CCSSCEEEEEEETTEEEEEET---TSEEEEEETTSSS---------C---EEEEEEC-
T ss_pred CCCcEE-----------EEEe-CCCCceEEEeeCCCEEEEEeC---CCceeEeeecccc---------e---eeEEecc-
Confidence 332111 1111 112356666654444444444 7788877322110 0 0011111
Q ss_pred CCCcEEEEEe--cCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEE---ECCCcEEEEeC
Q 013470 233 HDIEIVGISA--NGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVL---TGDGEVLMLGG 305 (442)
Q Consensus 233 ~~~~i~~i~~--g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l---~~~G~vy~~G~ 305 (442)
....+..+.. ...+.+....+|.+++|.....................|..++.. ....+++ +.|+.|..|-.
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 1123333333 234555567889999997543222111111122233455555543 2223332 25778888853
No 91
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=50.03 E-value=1.5e+02 Score=26.83 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=79.7
Q ss_pred EeeecCCCcceEEEEee-----c---CceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC
Q 013470 117 PVTFFDGHRYTITHISA-----G---WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR 188 (442)
Q Consensus 117 ~i~~~~~~~~~i~~vs~-----G---~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~ 188 (442)
....+.++...|..|+. . ....+.-..|+.|..|-.....+.+ ....|.....--...|..++...+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSSCEEEEEECSS
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCCceEEEEECCC
Confidence 33444455567888876 2 2233333568899999543211100 011121111112245777776655
Q ss_pred ceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCC
Q 013470 189 HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNST 266 (442)
Q Consensus 189 h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~ 266 (442)
..++++. ..|+.|..|-.... . ....+.. ....|..++.... +.+.-..+|.|..|-......
T Consensus 88 ~~~l~s~-s~D~~v~lwd~~~~----------~---~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~ 152 (343)
T 2xzm_R 88 NCFAISS-SWDKTLRLWDLRTG----------T---TYKRFVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152 (343)
T ss_dssp TTEEEEE-ETTSEEEEEETTSS----------C---EEEEEEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred CCEEEEE-cCCCcEEEEECCCC----------c---EEEEEcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence 4443332 11789999843211 0 0011111 2235666665433 455556789999996531100
Q ss_pred CCCCCccccCCCCCeeEEEeCC------------CeEEEEECCCcEEEEe
Q 013470 267 SDVNCPQSLPSSLSFSQAALGW------------NHVLVLTGDGEVLMLG 304 (442)
Q Consensus 267 ~~~~~p~~i~~~~~i~~i~~G~------------~~~~~l~~~G~vy~~G 304 (442)
............|..++... .+.+....||.|..|-
T Consensus 153 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 153 --FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp --EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred --eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 00000001223344444332 3456667899999996
No 92
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.97 E-value=1.6e+02 Score=27.20 Aligned_cols=118 Identities=8% Similarity=0.031 Sum_probs=68.6
Q ss_pred EEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC-----CeEEEEcCCCcEE
Q 013470 183 IACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG-----DRSAALSAEGHLY 257 (442)
Q Consensus 183 I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~s~~lt~~G~vy 257 (442)
.+...++.+++|+ .|++|..-..+.-..++ ...-.+....+...++.+|+.+.+.. .+.+.+|++|.+.
T Consensus 49 ~~~t~d~ll~fT~---~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 49 VCSTHDLILFFTT---QGRVYRAKAYDLPEASR---TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEETTSEEEEEET---TSEEEEEEGGGSCBCCS---SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EeCCCCEEEEEeC---CCeEEEEEHHHCcCCCc---cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 3445667888899 99999764322211111 11112222223333567888887664 4678889999888
Q ss_pred EeeCCCCCCCCC--CCccccCCCCCeeEE--EeCCCeEEEEECCCcEEEEeCC
Q 013470 258 TWGRGFNSTSDV--NCPQSLPSSLSFSQA--ALGWNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 258 ~wG~~~~~~~~~--~~p~~i~~~~~i~~i--~~G~~~~~~l~~~G~vy~~G~n 306 (442)
-.-...+..... ..-..+..+..+..+ ..+..+.++++++|++|.+-..
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred EeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 775433322111 001122334455544 3467788999999999999876
No 93
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=49.68 E-value=1.5e+02 Score=26.99 Aligned_cols=168 Identities=10% Similarity=0.064 Sum_probs=88.9
Q ss_pred CceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEE--EEeCCCceEEEEeecCCCeeeeeCCCCCCC
Q 013470 135 WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQ--IACGMRHSLVLLKDCLGNQVYGFGSGKRGQ 212 (442)
Q Consensus 135 ~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~--I~~G~~h~~~lt~~~~~G~vy~wG~n~~gq 212 (442)
..+.+++|.+|.|--.-...+.....+.. -...+..-+++.+.. ++.+.++.+++|+ .|++|.+-..+.-.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~---~G~~~~~~~~~ip~ 80 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISN---EGKLYLINAYEIKD 80 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCC
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEEC---CCeEEEEEHHHCCC
Confidence 44577888998876543222211110000 001111112334444 4456678899999 99999874432222
Q ss_pred CCCCCCCCceeecCeEeeccCCCcEEEEEec-----CCeEEEEcCCCcEEEeeCCCCCC---CCCCCccccCCCCCeeEE
Q 013470 213 LGVSKDRIRSVSLPQVTIGLHDIEIVGISAN-----GDRSAALSAEGHLYTWGRGFNST---SDVNCPQSLPSSLSFSQA 284 (442)
Q Consensus 213 lg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g-----~~~s~~lt~~G~vy~wG~~~~~~---~~~~~p~~i~~~~~i~~i 284 (442)
.++. ..-.+....+...++.+|+.+... ..+.+++|++|.++..-...+.. .+... ..+..+..+..+
T Consensus 81 ~~r~---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~-i~L~~~d~lv~~ 156 (312)
T 1suu_A 81 SSRA---SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIV-IKLNDKDFVTSA 156 (312)
T ss_dssp ----------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEEC-BCCCTTCCEEEE
T ss_pred CCcc---CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEE-EecCCCCEEEEE
Confidence 2211 111112222333345677777664 34678889999999876543321 11111 123345566665
Q ss_pred Ee--CCCeEEEEECCCcEEEEeCCCCcccCC
Q 013470 285 AL--GWNHVLVLTGDGEVLMLGGSHHGMLSD 313 (442)
Q Consensus 285 ~~--G~~~~~~l~~~G~vy~~G~n~~gqlG~ 313 (442)
.. +..+.++++++|.+.-+-....-..|.
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR 187 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNR 187 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCC
Confidence 44 467788999999999887665444443
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=49.41 E-value=2.3e+02 Score=28.98 Aligned_cols=189 Identities=12% Similarity=0.007 Sum_probs=94.5
Q ss_pred CcEEEEEeCCcee--EEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEee--cCceEEEEE
Q 013470 67 SSVSMLACGGAHV--LALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISA--GWNHSGFVS 142 (442)
Q Consensus 67 ~~i~~I~~G~~h~--~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~--G~~~s~~lt 142 (442)
..|..|+...... ++-.. ||.|..|-.... ..+..+..+...|..++. .....++-.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~-----~g~v~iwd~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLY-----SGRVEIWNYETQ--------------VEVRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp SCEEEEEECSSSSEEEEEET-----TSEEEEEETTTT--------------EEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeC-----CCEEEEEECCCC--------------ceEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 3666666554433 33344 888999964321 112222222234555544 334555667
Q ss_pred eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc--eEEEEeecCCCeeeeeCCCCCCCCCCCCCCC
Q 013470 143 DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH--SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI 220 (442)
Q Consensus 143 ~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h--~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~ 220 (442)
.+|.|++|-..... ....+.. ....|..++...+. .+.-.. +|.|..|-....
T Consensus 75 ~dg~i~vw~~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---dg~i~vw~~~~~---------- 129 (814)
T 3mkq_A 75 DDFRIRVFNYNTGE-----------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSD---DLTVKLWNWENN---------- 129 (814)
T ss_dssp TTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEECSSSSEEEEEET---TSEEEEEEGGGT----------
T ss_pred CCCeEEEEECCCCc-----------EEEEEec-CCCCEEEEEEeCCCCEEEEEcC---CCEEEEEECCCC----------
Confidence 88999999643211 1111111 22457777766444 333334 788888843110
Q ss_pred ceeecCeEeeccCCCcEEEEEecC---CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEe----CCCeEEE
Q 013470 221 RSVSLPQVTIGLHDIEIVGISANG---DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAAL----GWNHVLV 293 (442)
Q Consensus 221 ~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~----G~~~~~~ 293 (442)
......+. .....|..++... ...+.-..+|.|++|........ ..........+..++. .....++
T Consensus 130 --~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 130 --WALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp --SEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS---EEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred --ceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce---eEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 01111111 1234577776654 34455567899999975322111 0000111234445544 3445556
Q ss_pred EECCCcEEEEeC
Q 013470 294 LTGDGEVLMLGG 305 (442)
Q Consensus 294 l~~~G~vy~~G~ 305 (442)
-..+|.|..|-.
T Consensus 204 ~~~dg~i~~~d~ 215 (814)
T 3mkq_A 204 ASDDLTIKIWDY 215 (814)
T ss_dssp ECTTSEEEEEET
T ss_pred EeCCCEEEEEEC
Confidence 677888999854
No 95
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=47.18 E-value=2.1e+02 Score=27.80 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=72.5
Q ss_pred ceEEEEeecC--ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc-eEEEEeecCCCee
Q 013470 126 YTITHISAGW--NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH-SLVLLKDCLGNQV 202 (442)
Q Consensus 126 ~~i~~vs~G~--~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h-~~~lt~~~~~G~v 202 (442)
..|..|+... .+.+.-..|+.|+.|-.+. + ....+.. ....|..++...+. .++.... ++.|
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~----------~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~--d~~v 450 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNG--Q----------LLQTLTG-HSSSVWGVAFSPDDQTIASASD--DKTV 450 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTTC--C----------EEEEEEC-CSSCEEEEEECTTSSEEEEEET--TSEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--C----------EEEEecC-CCCCeEEEEECCCCCEEEEEcC--CCEE
Confidence 4566666543 3444556788899884321 1 0111111 22457777655433 3333222 7888
Q ss_pred eeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCCe--EEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCC
Q 013470 203 YGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDR--SAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLS 280 (442)
Q Consensus 203 y~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~--s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~ 280 (442)
..|-.+ +++ ...+.. ....|..++..... .+.-..++.|++|... ++ ...........
T Consensus 451 ~~w~~~--~~~------------~~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~---~~~~~~~h~~~ 510 (577)
T 2ymu_A 451 KLWNRN--GQL------------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ---LLQTLTGHSSS 510 (577)
T ss_dssp EEEETT--SCE------------EEEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SC---EEEEEECCSSC
T ss_pred EEEECC--CCE------------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CC---EEEEEeCCCCC
Confidence 888321 100 011111 22356666655443 3334578899999632 21 11111123456
Q ss_pred eeEEEeCC--CeEEEEECCCcEEEEe
Q 013470 281 FSQAALGW--NHVLVLTGDGEVLMLG 304 (442)
Q Consensus 281 i~~i~~G~--~~~~~l~~~G~vy~~G 304 (442)
|..++... .+.+.-..||.|+.|-
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 77776543 3444556788888883
No 96
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=47.13 E-value=1.5e+02 Score=26.18 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=11.8
Q ss_pred CceEEEEeecCCCeeeeeCCC
Q 013470 188 RHSLVLLKDCLGNQVYGFGSG 208 (442)
Q Consensus 188 ~h~~~lt~~~~~G~vy~wG~n 208 (442)
.|++++. +++||.+|-.
T Consensus 197 ~~~~~~~----~~~iyv~GG~ 213 (302)
T 2xn4_A 197 GAGVGVL----NNLLYAVGGH 213 (302)
T ss_dssp SCEEEEE----TTEEEEECCB
T ss_pred cccEEEE----CCEEEEECCC
Confidence 4665554 5899999853
No 97
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=45.80 E-value=1.6e+02 Score=26.04 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=11.7
Q ss_pred CeEEEEECCCcEEEEeCC
Q 013470 289 NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 289 ~~~~~l~~~G~vy~~G~n 306 (442)
.|+++.. +++||.+|-.
T Consensus 244 ~~~~~~~-~~~i~v~GG~ 260 (302)
T 2xn4_A 244 NAGVCAV-NGLLYVVGGD 260 (302)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cCeEEEE-CCEEEEECCc
Confidence 4555554 7899999853
No 98
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=45.20 E-value=1.9e+02 Score=26.65 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=40.3
Q ss_pred CcEEEEEecCC---eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEE-EECCCcEEEEeCC
Q 013470 235 IEIVGISANGD---RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLV-LTGDGEVLMLGGS 306 (442)
Q Consensus 235 ~~i~~i~~g~~---~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~-l~~~G~vy~~G~n 306 (442)
..|..++.... +.+.-..+|.|++|-....... ...........|..+.......++ -..||.|..|-..
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence 45777776554 5555678899999975432220 000111134566666665554444 4567888888644
No 99
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=43.84 E-value=1.7e+02 Score=25.80 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=36.6
Q ss_pred cEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC-CCeEEEEECCCcEEEEeC
Q 013470 236 EIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG-WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 236 ~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G-~~~~~~l~~~G~vy~~G~ 305 (442)
.|..++...+ ..+.-..||.|.+|.......+ ..+.....|..+... ..+.++...++.|+.|-.
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----EEEECSSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----eeecCCceEEeeecCCCCceeeccCCCEEEEEEC
Confidence 5666665433 3444467899999965432211 112234455555543 345556667888888854
No 100
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=42.69 E-value=1.8e+02 Score=25.86 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=36.7
Q ss_pred CcEEEEEeCCceeEE--EeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCce--EEEEE
Q 013470 67 SSVSMLACGGAHVLA--LTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNH--SGFVS 142 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~--lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~--s~~lt 142 (442)
..|..++......++ -.. |+.|..|-... ...+..+..+...|..++....- .+.-.
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~-----D~~v~~wd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 126 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASW-----DKTLRLWDVAT--------------GETYQRFVGHKSDVMSVDIDKKASMIISGS 126 (319)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSEEEEEETTT--------------TEEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeC-----CCEEEEEECCC--------------CCeeEEEccCCCcEEEEEEcCCCCEEEEEe
Confidence 466666654443333 334 88899986432 11222222233457777665443 33445
Q ss_pred eCCCEEEeCC
Q 013470 143 DSGCLFTCGD 152 (442)
Q Consensus 143 ~~g~vy~~G~ 152 (442)
.|+.|..|-.
T Consensus 127 ~D~~i~vwd~ 136 (319)
T 3frx_A 127 RDKTIKVWTI 136 (319)
T ss_dssp TTSCEEEEET
T ss_pred CCCeEEEEEC
Confidence 7889999953
No 101
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=42.50 E-value=1.8e+02 Score=25.61 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=92.8
Q ss_pred CcEEEEEeCCceeEEE--eCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec----CceEEE
Q 013470 67 SSVSMLACGGAHVLAL--TSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG----WNHSGF 140 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~l--t~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G----~~~s~~ 140 (442)
..|..++....-..++ .. |+.|..|-.... ....+..+..+...|..|+.. ....+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~-----D~~v~iw~~~~~------------~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSS-----DKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSCEEEEEBCSS------------CBCCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred CceEEEEECCCCCEEEEEeC-----CCEEEEEecCCC------------CcEEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence 3566666543322222 34 888888864321 011222333333567777753 233344
Q ss_pred EEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC----ceEEEEeecCCCeeeeeCCCCCCCCCCC
Q 013470 141 VSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR----HSLVLLKDCLGNQVYGFGSGKRGQLGVS 216 (442)
Q Consensus 141 lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~----h~~~lt~~~~~G~vy~wG~n~~gqlg~~ 216 (442)
-..||.|..|-.... ...+..........|..++...+ ..+.-.. ||.|..|-.......
T Consensus 73 ~s~D~~v~iWd~~~~----------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~---d~~v~~wd~~~~~~~--- 136 (297)
T 2pm7_B 73 CSYDGKVMIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS---DGKVSVVEFKENGTT--- 136 (297)
T ss_dssp EETTTEEEEEEBSSS----------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TSEEEEEEBCSSSCB---
T ss_pred EcCCCEEEEEEcCCC----------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC---CCcEEEEEecCCCce---
Confidence 467899999964320 00111111111245777776542 2333344 888888843221110
Q ss_pred CCCCceeecCeEeeccCCCcEEEEEecCC---------------eEEEEcCCCcEEEeeCCCCCCCCCCCccccC-CCCC
Q 013470 217 KDRIRSVSLPQVTIGLHDIEIVGISANGD---------------RSAALSAEGHLYTWGRGFNSTSDVNCPQSLP-SSLS 280 (442)
Q Consensus 217 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~~---------------~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~-~~~~ 280 (442)
.+..+.. ....|..++.... ..+.-..||.|.+|-.....+... ....+. ....
T Consensus 137 --------~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~-~~~~l~~H~~~ 206 (297)
T 2pm7_B 137 --------SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-LESTLEGHSDW 206 (297)
T ss_dssp --------CCEEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE-EEEEECCCSSC
T ss_pred --------eeeeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE-EEEEecCCCCc
Confidence 0111111 1123444443322 233335788999996432111000 001111 2446
Q ss_pred eeEEEeCCC-----eEEEEECCCcEEEEeC
Q 013470 281 FSQAALGWN-----HVLVLTGDGEVLMLGG 305 (442)
Q Consensus 281 i~~i~~G~~-----~~~~l~~~G~vy~~G~ 305 (442)
|..++.... ..+.-..||.|..|-.
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 777776553 3444567899999954
No 102
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=42.19 E-value=1.9e+02 Score=25.84 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=11.7
Q ss_pred ceEEEEEeCCCEEEeCC
Q 013470 136 NHSGFVSDSGCLFTCGD 152 (442)
Q Consensus 136 ~~s~~lt~~g~vy~~G~ 152 (442)
.|+++. -+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 455544 6789999994
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=41.50 E-value=3.8e+02 Score=29.19 Aligned_cols=146 Identities=11% Similarity=-0.003 Sum_probs=71.0
Q ss_pred eEEEEeec--CceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCce-EEEEeecCCCeee
Q 013470 127 TITHISAG--WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS-LVLLKDCLGNQVY 203 (442)
Q Consensus 127 ~i~~vs~G--~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~-~~lt~~~~~G~vy 203 (442)
.|..++.. ..+.+.-..||.|..|-....... .+. .....|..++...+.. ++... +|.|+
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~---dg~v~ 1068 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV------------FLQ-AHQETVKDFRLLQDSRLLSWSF---DGTVK 1068 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE------------CCB-CCSSCEEEEEECSSSEEEEEES---SSEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE------------EEe-cCCCcEEEEEEcCCCcEEEEEC---CCcEE
Confidence 34444433 334455567889999964331111 111 1123566666554443 44444 89999
Q ss_pred eeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEec--CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCe
Q 013470 204 GFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN--GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSF 281 (442)
Q Consensus 204 ~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i 281 (442)
.|-.... ++ ...+.. ....|..++.. ....+.-..+|.|++|-......... .......|
T Consensus 1069 vwd~~~~-~~------------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~----l~~h~~~v 1130 (1249)
T 3sfz_A 1069 VWNVITG-RI------------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE----LKGHNGCV 1130 (1249)
T ss_dssp EEETTTT-CC------------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC----CCCCSSCE
T ss_pred EEECCCC-ce------------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee----eccCCCcE
Confidence 9954321 10 111111 11123333332 33455556788888886432221111 11123456
Q ss_pred eEEEeCC--CeEEEEECCCcEEEEeCC
Q 013470 282 SQAALGW--NHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 282 ~~i~~G~--~~~~~l~~~G~vy~~G~n 306 (442)
..++... ...+.-..||.|+.|-..
T Consensus 1131 ~~~~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp EEEEECSSSSEEEEEETTSCCCEEESS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 6666543 344445678888888644
No 104
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=40.38 E-value=1.9e+02 Score=25.37 Aligned_cols=191 Identities=12% Similarity=0.016 Sum_probs=87.8
Q ss_pred CcEEEEEeCCceeE--EEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEE
Q 013470 67 SSVSMLACGGAHVL--ALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVS 142 (442)
Q Consensus 67 ~~i~~I~~G~~h~~--~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt 142 (442)
..|..++......+ .-.. |+.|..|-.... ..+..+..+...|..++... .+.+.-.
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 126 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASD-----DKTLKIWDVSSG--------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSEEEEEETTTC--------------CEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CceEEEEEcCCCCEEEEECC-----CCEEEEEECCCC--------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 46777776544333 3334 888999965321 11111222223455554433 3444456
Q ss_pred eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc--eEEEEeecCCCeeeeeCCCCCCCCCCCCCCC
Q 013470 143 DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH--SLVLLKDCLGNQVYGFGSGKRGQLGVSKDRI 220 (442)
Q Consensus 143 ~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h--~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~ 220 (442)
.||.|+.|-.... .+..........|..++...+. .+.-.. +|.|..|-.... +
T Consensus 127 ~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~-~-------- 182 (312)
T 4ery_A 127 FDESVRIWDVKTG------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASG-Q-------- 182 (312)
T ss_dssp TTSCEEEEETTTC------------CEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTC-C--------
T ss_pred CCCcEEEEECCCC------------EEEEEecCCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEECCCC-c--------
Confidence 7889999953221 1111111122456666655432 333334 788888843211 0
Q ss_pred ceeecCeEeeccCCCcEEEEEec--CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCe-eEEE-eCCCeEEEEEC
Q 013470 221 RSVSLPQVTIGLHDIEIVGISAN--GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSF-SQAA-LGWNHVLVLTG 296 (442)
Q Consensus 221 ~~~~~p~~v~~~~~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i-~~i~-~G~~~~~~l~~ 296 (442)
. ...+.......+..++.. ..+.++-..+|.|++|.......+....... .....+ .... .+..+.+.-..
T Consensus 183 ---~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 183 ---C-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp ---E-EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC-CSSSCCCEEEECSSSCEEEECCT
T ss_pred ---e-eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC-CceEEEEEEEEeCCCcEEEEECC
Confidence 0 001111122244444443 3455666788999999653221110000000 000111 1112 23344455567
Q ss_pred CCcEEEEeC
Q 013470 297 DGEVLMLGG 305 (442)
Q Consensus 297 ~G~vy~~G~ 305 (442)
||.|+.|-.
T Consensus 258 dg~i~vwd~ 266 (312)
T 4ery_A 258 DNLVYIWNL 266 (312)
T ss_dssp TSCEEEEET
T ss_pred CCEEEEEEC
Confidence 889999964
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=37.79 E-value=2.3e+02 Score=25.65 Aligned_cols=154 Identities=9% Similarity=-0.048 Sum_probs=78.9
Q ss_pred ecCCCcceEEEEeecCc---eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEee-cCCCceEEEEeCC---CceEE
Q 013470 120 FFDGHRYTITHISAGWN---HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSS-FVNKNVHQIACGM---RHSLV 192 (442)
Q Consensus 120 ~~~~~~~~i~~vs~G~~---~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~I~~I~~G~---~h~~~ 192 (442)
.+......|..++.... ..+.-..||.|..|-.... .....+.. -....|..++... ...+.
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 33333356777766554 3445567899999954321 11111111 1234677777654 23333
Q ss_pred EEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccC--CCcEEEEEec--CCeEEEEcCCCcEEEeeCCCCCCCC
Q 013470 193 LLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH--DIEIVGISAN--GDRSAALSAEGHLYTWGRGFNSTSD 268 (442)
Q Consensus 193 lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~--~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~~~~ 268 (442)
-.. +|.|..|-... . ....+.... ...|..++.. ....+.-..+|.|++|-.. ++
T Consensus 137 ~~~---d~~i~iwd~~~-----------~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~-- 195 (383)
T 3ei3_B 137 SSI---RGATTLRDFSG-----------S---VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH-- 195 (383)
T ss_dssp EET---TTEEEEEETTS-----------C---EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC--
T ss_pred EeC---CCEEEEEECCC-----------C---ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC--
Confidence 344 89999994321 0 001111111 1235555443 3455555788999999752 11
Q ss_pred CCCccccCCCCCeeEEEeCCC---eEEEEECCCcEEEEeCC
Q 013470 269 VNCPQSLPSSLSFSQAALGWN---HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 269 ~~~p~~i~~~~~i~~i~~G~~---~~~~l~~~G~vy~~G~n 306 (442)
...........|..++.... ..+.-..||.|..|-..
T Consensus 196 -~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 196 -EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred -EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 11111123456777765443 44555678888888543
No 106
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=37.60 E-value=3.5e+02 Score=27.61 Aligned_cols=189 Identities=11% Similarity=-0.051 Sum_probs=93.9
Q ss_pred CcEEEEEeCCc--eeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCc--eEEEEE
Q 013470 67 SSVSMLACGGA--HVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN--HSGFVS 142 (442)
Q Consensus 67 ~~i~~I~~G~~--h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~--~s~~lt 142 (442)
..|..++.... ..+.-.. ||.|+.|-..... .+..+..+...|..++.... +.+.-.
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSD-----DFRIRVFNYNTGE--------------KVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEET-----TSEEEEEETTTCC--------------EEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCc--------------EEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 45666654433 3444445 8999999754321 11111112234666665443 444456
Q ss_pred eCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCC---CceEEEEeecCCCeeeeeCCCCCCCCCCCCCC
Q 013470 143 DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM---RHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDR 219 (442)
Q Consensus 143 ~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~---~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~ 219 (442)
.||.|..|-.... .............|..++... ...+.-.. +|.|+.|-.....
T Consensus 117 ~dg~i~vw~~~~~-----------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~v~vwd~~~~~-------- 174 (814)
T 3mkq_A 117 DDLTVKLWNWENN-----------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQST-------- 174 (814)
T ss_dssp TTSEEEEEEGGGT-----------SEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEEETTCSS--------
T ss_pred CCCEEEEEECCCC-----------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc--------
Confidence 7888888853210 011111111234577777643 23333344 8999999532110
Q ss_pred CceeecCeEeeccCCCcEEEEEe----cCCeEEEEcCCCcEEEeeCCCCCCCCCCCcccc-CCCCCeeEEEeCC--CeEE
Q 013470 220 IRSVSLPQVTIGLHDIEIVGISA----NGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSL-PSSLSFSQAALGW--NHVL 292 (442)
Q Consensus 220 ~~~~~~p~~v~~~~~~~i~~i~~----g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i-~~~~~i~~i~~G~--~~~~ 292 (442)
....+.......+..++. .....+.-..+|.|++|-...... ...+ .....|..++... ...+
T Consensus 175 -----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 175 -----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----VATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp -----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE-----EEEEECCSSCEEEEEECSSSSEEE
T ss_pred -----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-----EEEEcCCCCCEEEEEEcCCCCEEE
Confidence 011111111123333333 334555667889999996432111 1111 1344566665543 3455
Q ss_pred EEECCCcEEEEeCC
Q 013470 293 VLTGDGEVLMLGGS 306 (442)
Q Consensus 293 ~l~~~G~vy~~G~n 306 (442)
.-..+|.|+.|-..
T Consensus 245 ~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 245 SGSEDGTLKIWNSS 258 (814)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEeCCCeEEEEECC
Confidence 56778999999654
No 107
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=37.12 E-value=3.4e+02 Score=27.35 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=89.8
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEEeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~ 144 (442)
..|..|+......++++-+. |+.|..|-.... ..+..+..+...|..|+... .+.+.-..|
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~---Dg~v~vwd~~~~--------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 493 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSW---DGELRLWDLAAG--------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493 (694)
T ss_dssp SCEEEEEECTTSSEEEEEET---TSEEEEEETTTT--------------EEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEeC---CCcEEEEECCCC--------------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 46777766544333333211 888999864321 11222222234577776543 344455678
Q ss_pred CCEEEeCCCCCcccCCCCCCCcccceEEee---cCCCceEEEEeCCC---ceEEEEeecCCCeeeeeCCCCCCCCCCCCC
Q 013470 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSS---FVNKNVHQIACGMR---HSLVLLKDCLGNQVYGFGSGKRGQLGVSKD 218 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~---~~~~~I~~I~~G~~---h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~ 218 (442)
+.|..|-...... ..+.. .....|..++...+ ..++-... ||.|..|-.... +
T Consensus 494 ~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--d~~v~vwd~~~~-~------ 552 (694)
T 3dm0_A 494 RTIKLWNTLGECK------------YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW--DKTVKVWNLSNC-K------ 552 (694)
T ss_dssp SCEEEECTTSCEE------------EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET--TSCEEEEETTTC-C------
T ss_pred CEEEEEECCCCcc------------eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC--CCeEEEEECCCC-c------
Confidence 9999995321100 01100 01123555554332 22332222 888988843211 0
Q ss_pred CCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC-CeEEEEE
Q 013470 219 RIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW-NHVLVLT 295 (442)
Q Consensus 219 ~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~-~~~~~l~ 295 (442)
....+.. ....|..++.... ..+.-..+|.|.+|-......+ ..+.....|..++... ...++..
T Consensus 553 ------~~~~~~~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 553 ------LRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL-----YSLEANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp ------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE-----ECCBCSSCEEEEEECSSSSEEEEE
T ss_pred ------EEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-----EEecCCCcEEEEEEcCCCcEEEEE
Confidence 0011111 1235666665543 3344457889999965332111 1122334555555443 3344445
Q ss_pred CCCcEEEEeCC
Q 013470 296 GDGEVLMLGGS 306 (442)
Q Consensus 296 ~~G~vy~~G~n 306 (442)
.++.|..|-..
T Consensus 621 ~~~~i~iwd~~ 631 (694)
T 3dm0_A 621 TEHGIKIWDLE 631 (694)
T ss_dssp ETTEEEEEETT
T ss_pred cCCCEEEEECC
Confidence 56667777543
No 108
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=36.95 E-value=2.6e+02 Score=25.93 Aligned_cols=163 Identities=13% Similarity=-0.047 Sum_probs=77.8
Q ss_pred cceEEEEeecC-c--eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCc--eEEEEeecCC
Q 013470 125 RYTITHISAGW-N--HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRH--SLVLLKDCLG 199 (442)
Q Consensus 125 ~~~i~~vs~G~-~--~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h--~~~lt~~~~~ 199 (442)
...|..|+... . +.+.-..||.|..|-..... .+ ....+..... ....|..|+...+. .+.-.. +
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~-~~-----~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~---d 132 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII-VG-----EVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSK---D 132 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH-TT-----CCCSCSEEEE-CSSCEEEEEECTTSSEEEEEET---T
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccc-cC-----cccceeeecc-CCCCEEEEEEeCCCCEEEEEeC---C
Confidence 35677777655 3 34444578999999532100 00 0011111111 23467777765432 333344 8
Q ss_pred CeeeeeCCC--CCCCCCCCCCCCceeecCeEeec-c--CCCcEEEEEec----CCeEEEEcCCCcEEEeeCCCCCCCCCC
Q 013470 200 NQVYGFGSG--KRGQLGVSKDRIRSVSLPQVTIG-L--HDIEIVGISAN----GDRSAALSAEGHLYTWGRGFNSTSDVN 270 (442)
Q Consensus 200 G~vy~wG~n--~~gqlg~~~~~~~~~~~p~~v~~-~--~~~~i~~i~~g----~~~s~~lt~~G~vy~wG~~~~~~~~~~ 270 (442)
|.|..|-.. ..+++-. .........+.. . ....+..+..- ....+.-..+|.|++|........
T Consensus 133 g~i~vwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--- 205 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVK----FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL--- 205 (437)
T ss_dssp SEEEEEEEEEEEETTEEE----EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE---
T ss_pred CEEEEEEeccccCCceee----ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee---
Confidence 889888431 1111100 000000001110 0 23345555422 345556678899999965432111
Q ss_pred CccccC---CCCCeeEEEeC--CCeEEEEECCCcEEEEeCC
Q 013470 271 CPQSLP---SSLSFSQAALG--WNHVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 271 ~p~~i~---~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~n 306 (442)
..+. ....|..++.. ..+.+.-..+|.|..|-..
T Consensus 206 --~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 206 --QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp --EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred --EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 1111 23467777664 3445556778888888643
No 109
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=36.66 E-value=2.4e+02 Score=25.54 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=35.0
Q ss_pred CcEEEEEecC--CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEEECCCcEEEEeC
Q 013470 235 IEIVGISANG--DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 235 ~~i~~i~~g~--~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~ 305 (442)
..|..++... ...+.-..||.|..|.............. .....+..++.. ....++-..+|.|..|-.
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE--SIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--TCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC--CcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 3566666543 34444567899999965432111000000 011234444433 344455567888888854
No 110
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=35.60 E-value=2.6e+02 Score=25.48 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCeEEEEECCCcEEEE
Q 013470 244 GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLML 303 (442)
Q Consensus 244 ~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~~~~l~~~G~vy~~ 303 (442)
....++.+.+|.||++.... ++.--. ..+................++.+.+|.||++
T Consensus 318 ~~~l~v~~~~g~l~~~d~~t-G~~~~~--~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVED-GRFVAQ--QKVDSSGFQTEPVAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEE--EECCTTCBCSCCEEETTEEEEEBTTSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCC-CcEEEE--EecCCCcceeCCEEECCEEEEEeCCCEEEEE
Confidence 35556666778888876432 211000 0010100011112235567777888888876
No 111
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.07 E-value=2.7e+02 Score=25.25 Aligned_cols=223 Identities=12% Similarity=0.073 Sum_probs=114.5
Q ss_pred CCCCcEEE--EEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEee-----cCc
Q 013470 64 SSLSSVSM--LACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISA-----GWN 136 (442)
Q Consensus 64 ~~~~~i~~--I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~-----G~~ 136 (442)
.+...+.. ++....+.+++|+ .|++|..-...--..+.... -......+.+.++ .+|+.+.. ...
T Consensus 39 ke~D~l~~~~~~~~~~~ll~fT~-----~G~~~~~~~~elp~~~~~a~-G~~i~~~l~l~~~--e~i~~~~~~~~~~~~~ 110 (307)
T 1zi0_A 39 KEEDFIDRLLVANTHDHILCFSS-----RGRVYSMKVYQLPEATRGAR-GRPIVNLLPLEQD--ERITAILPVTEFEEGV 110 (307)
T ss_dssp ---CCEEEEEEEETTCEEEEEET-----TSEEEEEEGGGSCCCCSSSC-CEEGGGTSCCCTT--CCEEEEEEESCCCTTC
T ss_pred CCCCEEEEEEEECCCCEEEEEEC-----CCEEEEEEhhHCcCCCCCCC-CeEhhhccCCCCC--CEEEEEEEeccCCCCc
Confidence 34445544 4556777899999 99999987654322222110 1111122333333 45776654 233
Q ss_pred eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceE-EeecCCCceEEE--EeCCCceEEEEeecCCCeeeeeCCCCCCCC
Q 013470 137 HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVK-VSSFVNKNVHQI--ACGMRHSLVLLKDCLGNQVYGFGSGKRGQL 213 (442)
Q Consensus 137 ~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~-v~~~~~~~I~~I--~~G~~h~~~lt~~~~~G~vy~wG~n~~gql 213 (442)
+.+++|++|.+--.-...+-... ..... +...++..++.+ ..+.++.+++|+ +|+++-+-..+.-.+
T Consensus 111 ~ll~~T~~G~~Krt~l~e~~~~~-------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~---~G~~irf~~~~v~~~ 180 (307)
T 1zi0_A 111 KVFMATANGTVKKTVLTEFNRLR-------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSA---EGKVVRFKESSVRAM 180 (307)
T ss_dssp EEEEEETTSEEEEEEGGGGTTCC-------TTCEESSCCCTTCCEEEEEEECTTCEEEEEET---TSEEEEEEGGGSCBC
T ss_pred EEEEEeCCCeEEEEEHHHhhccc-------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECC---CCcEEEEEHHHcCcc
Confidence 56778999988765332221110 01111 111123445443 335678889999 999998865554444
Q ss_pred CCCCCCCceeecCeEeeccCCCcEEEEEec--CCeEEEEcCCCcEEEeeCCCCC-----CCCCCCccccCCCCCeeEEEe
Q 013470 214 GVSKDRIRSVSLPQVTIGLHDIEIVGISAN--GDRSAALSAEGHLYTWGRGFNS-----TSDVNCPQSLPSSLSFSQAAL 286 (442)
Q Consensus 214 g~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~s~~lt~~G~vy~wG~~~~~-----~~~~~~p~~i~~~~~i~~i~~ 286 (442)
|+...... .+....+..|+.+..- ....+.++++|.+--.-...+. ..+............+..+..
T Consensus 181 gr~a~Gv~------~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~ 254 (307)
T 1zi0_A 181 GCNTTGVR------GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQ 254 (307)
T ss_dssp CTTCCCEE------CCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEE
T ss_pred CCCCCCeE------eEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEE
Confidence 44211111 1111234567766542 2346777888775554332222 122222222223345555443
Q ss_pred --CCCeEEEEECCCcEEEEeCCCCcc
Q 013470 287 --GWNHVLVLTGDGEVLMLGGSHHGM 310 (442)
Q Consensus 287 --G~~~~~~l~~~G~vy~~G~n~~gq 310 (442)
.....++++++|++.-+-.+..-.
T Consensus 255 v~~~~~l~~~t~~g~~ir~~~~~i~~ 280 (307)
T 1zi0_A 255 VDDCDQIMMITDAGTLVRTRVSEISI 280 (307)
T ss_dssp ECTTCEEEEEESSCCEEEEEGGGSCB
T ss_pred eCCCceEEEEcCCCcEEEEecccccc
Confidence 566788899999998876655433
No 112
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.89 E-value=2.9e+02 Score=25.29 Aligned_cols=226 Identities=11% Similarity=0.023 Sum_probs=115.9
Q ss_pred CCCcEEE--EEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC-----ce
Q 013470 65 SLSSVSM--LACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW-----NH 137 (442)
Q Consensus 65 ~~~~i~~--I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~-----~~ 137 (442)
+...+.. ++....+.+++|+ .|++|..-...--..+.... -......+.+.++ .+|+.+..-. .+
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~-----~Gr~~~~~~~elp~~~r~a~-G~~i~~~i~L~~~--e~Iv~~~~~~~~~~~~~ 108 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTN-----KGNYLYCPVHELPDIRWKDL-GQHIANIIPIDRD--EEIIKAIPINDFELNGY 108 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEET-----TSEEEEEEGGGSCBCCTTSC-CEEGGGTSCCCTT--CCEEEEEEESCTTSSCE
T ss_pred CCCEEEEEEEECCCCEEEEEEC-----CCEEEEEEHHHCcCCCCCCC-CcChhhccCCCCC--CEEEEEEEecccCCCce
Confidence 3344444 4566778899999 99999987654322222111 1111222333334 4576654432 35
Q ss_pred EEEEEeCCCEEEeCCCCCcccCCCCCCCcccceE-EeecCCCceEEE--EeCCCceEEEEeecCCCeeeeeCCCCCCCCC
Q 013470 138 SGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVK-VSSFVNKNVHQI--ACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214 (442)
Q Consensus 138 s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~-v~~~~~~~I~~I--~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg 214 (442)
.+++|++|.+--.-...+-.... ..... +...++..++.+ ..+.++.+++|+ +|+++-+-.++....|
T Consensus 109 ll~~T~~G~iKrt~l~e~~~~~r------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~---~G~~irf~~~ev~~~g 179 (323)
T 1wp5_A 109 FLFVTRNGMVKKTELKHYKAQRY------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTH---NGYALWFDESEVSIVG 179 (323)
T ss_dssp EEEEETTSEEEEEEGGGGCCSCC------SSCEECSCCCTTCCEEEEEEECSCSEEEEEET---TSEEEEEEGGGSCBCC
T ss_pred EEEEeCCCeEEEeEHHHhhhccc------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeC---CCcEEEEEHHHCcccC
Confidence 77889999877664332211100 01111 111122444443 346778999999 9999988665544444
Q ss_pred CCCCCCceeecCeEeeccCCCcEEEEEec--CC-eEEEEcCCCcEEEeeCCCC-----CCCCCCCccccCC-CCCeeEE-
Q 013470 215 VSKDRIRSVSLPQVTIGLHDIEIVGISAN--GD-RSAALSAEGHLYTWGRGFN-----STSDVNCPQSLPS-SLSFSQA- 284 (442)
Q Consensus 215 ~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~-~s~~lt~~G~vy~wG~~~~-----~~~~~~~p~~i~~-~~~i~~i- 284 (442)
+........ ....+..|+.+..- .. ..+.++++|.....-...+ +..+...+..+.. +..+..+
T Consensus 180 R~a~GV~~i------~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~ 253 (323)
T 1wp5_A 180 VRAAGVKGM------NLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFV 253 (323)
T ss_dssp SSCCCEECC------CCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEE
T ss_pred CCCcCEEEE------EeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEE
Confidence 421111111 11123456555331 22 4666677776443332221 1223333333322 3345432
Q ss_pred -EeCCCeEEEEECCCcEEEEeCCCCcccCC
Q 013470 285 -ALGWNHVLVLTGDGEVLMLGGSHHGMLSD 313 (442)
Q Consensus 285 -~~G~~~~~~l~~~G~vy~~G~n~~gqlG~ 313 (442)
..+....++++++|++.-.-.+..-..|.
T Consensus 254 ~v~~~~~i~~it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 254 VAQDSDTIYLQTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp EECTTCEEEEEETTSCEEEEEGGGSCBCCS
T ss_pred EeCCCCeEEEEeCCCeEEEEEhhhcCccCc
Confidence 33567888999999998876665544443
No 113
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.27 E-value=3e+02 Score=25.19 Aligned_cols=162 Identities=12% Similarity=-0.068 Sum_probs=69.8
Q ss_pred ceEEEEeec---CceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCee
Q 013470 126 YTITHISAG---WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQV 202 (442)
Q Consensus 126 ~~i~~vs~G---~~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~v 202 (442)
..|..++.. ....+.-..||.|..|-....+ .+.....--...|..|+...+...+++. ..||.|
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-----------~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~i 273 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-----------RAVRTYHGHEGDINSVKFFPDGQRFGTG-SDDGTC 273 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----------CCCEEECCCSSCCCEEEECTTSSEEEEE-CSSSCE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----------cceEEECCcCCCeEEEEEecCCCeEEEE-cCCCeE
Confidence 446666653 2344445678999999532110 1111111112346666655443333322 117888
Q ss_pred eeeCCCCCCCCCCCCCCCceeecCeEee-ccCCCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCe
Q 013470 203 YGFGSGKRGQLGVSKDRIRSVSLPQVTI-GLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSF 281 (442)
Q Consensus 203 y~wG~n~~gqlg~~~~~~~~~~~p~~v~-~~~~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i 281 (442)
..|-.....++..- ...+.... ......-+..+....+.++-..+|.|++|-..............-.....|
T Consensus 274 ~lwd~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 274 RLFDMRTGHQLQVY------NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp EEEETTTTEEEEEE------CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred EEEECCCCcEEEEe------cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 88854321111000 00000000 000011222333344555667899999996432111000000000123356
Q ss_pred eEEEeCC--CeEEEEECCCcEEEEeC
Q 013470 282 SQAALGW--NHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 282 ~~i~~G~--~~~~~l~~~G~vy~~G~ 305 (442)
..++... .+.+.-..||.|..|-.
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEec
Confidence 6655543 23333456788888854
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=29.57 E-value=3e+02 Score=24.52 Aligned_cols=110 Identities=6% Similarity=-0.091 Sum_probs=56.2
Q ss_pred eEEEEeecC----ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEe-ecCCCceEEEEeCCCceEEEE--eecCC
Q 013470 127 TITHISAGW----NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVS-SFVNKNVHQIACGMRHSLVLL--KDCLG 199 (442)
Q Consensus 127 ~i~~vs~G~----~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~-~~~~~~I~~I~~G~~h~~~lt--~~~~~ 199 (442)
.|..++... .+.+.-..||.|..|-..... +..+. ......|..++...+..++.+ . +
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---d 191 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS------------QYIVHSAKSDVEYSSGVLHKDSLLLALYSP---D 191 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSC------------EEEEECCCSSCCCCEEEECTTSCEEEEECT---T
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc------------EEEEEecCCCCceEEEEECCCCCEEEEEcC---C
Confidence 477776644 344445678999999643211 11111 111224666665544433333 4 8
Q ss_pred CeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC-eEEEEcCCCcEEEeeCCC
Q 013470 200 NQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD-RSAALSAEGHLYTWGRGF 263 (442)
Q Consensus 200 G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~-~s~~lt~~G~vy~wG~~~ 263 (442)
|.|..|-...... .+..+.......|..++...+ ..++...++.|.+|....
T Consensus 192 g~i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~ 244 (343)
T 3lrv_A 192 GILDVYNLSSPDQ------------ASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK 244 (343)
T ss_dssp SCEEEEESSCTTS------------CCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred CEEEEEECCCCCC------------CccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence 8888884332111 111122112346777766543 334444466999997644
No 115
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=29.45 E-value=3.5e+02 Score=25.10 Aligned_cols=56 Identities=7% Similarity=-0.055 Sum_probs=32.0
Q ss_pred eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC--CCeEEEEECCCcEEEEeC
Q 013470 246 RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGG 305 (442)
Q Consensus 246 ~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G--~~~~~~l~~~G~vy~~G~ 305 (442)
+.+.-..+|.|++|.......+ .........|..++.. ..+.+.-..||.|..|-.
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCL----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEE----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred EEEEEeCCCeEEEEECCCCceE----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 4455567899999965321110 0111123456666543 455666678899999943
No 116
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=29.01 E-value=3.1e+02 Score=24.47 Aligned_cols=190 Identities=11% Similarity=0.022 Sum_probs=92.4
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecC--ceEEEEEeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW--NHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~--~~s~~lt~~ 144 (442)
..|..++......++++... |+.|..|-.... ..+..+..+...|..|+... .+.+.-..|
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~---D~~v~lwd~~~~--------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d 139 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSW---DKTLRLWDLRTG--------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139 (343)
T ss_dssp SCEEEEEECSSTTEEEEEET---TSEEEEEETTSS--------------CEEEEEECCCSCEEEEEECSSTTEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEcC---CCcEEEEECCCC--------------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCC
Confidence 46777776554443333211 899999975321 11222222224576666543 344555678
Q ss_pred CCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCC------------CceEEEEeecCCCeeeeeCCCCCCC
Q 013470 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM------------RHSLVLLKDCLGNQVYGFGSGKRGQ 212 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~------------~h~~~lt~~~~~G~vy~wG~n~~gq 212 (442)
+.|..|-.............. ....|..++... ...+.... +|.|..|-.. .
T Consensus 140 ~~i~~wd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~--~- 203 (343)
T 2xzm_R 140 REIKLWNILGECKFSSAEKEN----------HSDWVSCVRYSPIMKSANKVQPFAPYFASVGW---DGRLKVWNTN--F- 203 (343)
T ss_dssp SCEEEEESSSCEEEECCTTTS----------CSSCEEEEEECCCCCSCSCCCSSCCEEEEEET---TSEEEEEETT--T-
T ss_pred CEEEEEeccCCceeeeecccC----------CCceeeeeeeccccccccccCCCCCEEEEEcC---CCEEEEEcCC--C-
Confidence 999999643111100000000 011233333322 23344445 8999999421 0
Q ss_pred CCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC-C
Q 013470 213 LGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW-N 289 (442)
Q Consensus 213 lg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~-~ 289 (442)
. ....+. .....|..++.... +.+.-..+|.|++|-....... ...+.....|..++... .
T Consensus 204 --------~---~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~~v~~v~~sp~~ 267 (343)
T 2xzm_R 204 --------Q---IRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP----QREFDAGSTINQIAFNPKL 267 (343)
T ss_dssp --------E---EEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC----SEEEECSSCEEEEEECSSS
T ss_pred --------c---eeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc----ceeecCCCcEEEEEECCCC
Confidence 0 001111 12235666665543 4444567899999975322211 11122344577776543 3
Q ss_pred eEEEEECCCcEEEEeC
Q 013470 290 HVLVLTGDGEVLMLGG 305 (442)
Q Consensus 290 ~~~~l~~~G~vy~~G~ 305 (442)
..++...++.+..|-.
T Consensus 268 ~~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 268 QWVAVGTDQGVKIFNL 283 (343)
T ss_dssp CEEEEEESSCEEEEES
T ss_pred CEEEEECCCCEEEEEe
Confidence 3455566777888854
No 117
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=28.92 E-value=3e+02 Score=24.15 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=92.5
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEe--ecCceEEEEEeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS--AGWNHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs--~G~~~s~~lt~~ 144 (442)
..|..|+.......+++.. .||.|..|-.... ..+..+......|..++ ....+.+.-..|
T Consensus 14 ~~V~~~~fsp~~~~l~s~~---~dg~v~lWd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTL---YSGRVELWNYETQ--------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp SCEEEEEECSSSSEEEEEE---TTSEEEEEETTTT--------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEc---CCCcEEEEECCCC--------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 4677777665444433321 1899999964321 11111111112344443 334445555678
Q ss_pred CCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceee
Q 013470 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVS 224 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~ 224 (442)
+.|..|-.... .....+.. -...|..|+...+..++++- ..||.|..|-.... . .
T Consensus 77 ~~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~----------~--~ 131 (304)
T 2ynn_A 77 FRIRVFNYNTG-----------EKVVDFEA-HPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENN----------W--A 131 (304)
T ss_dssp SEEEEEETTTC-----------CEEEEEEC-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEEGGGT----------T--E
T ss_pred CEEEEEECCCC-----------cEEEEEeC-CCCcEEEEEEcCCCCEEEEE-CCCCeEEEEECCCC----------c--c
Confidence 88999954321 01111121 22457777765544333332 11888888842110 0 0
Q ss_pred cCeEeeccCCCcEEEEEecC---CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeC----CCeEEEEECC
Q 013470 225 LPQVTIGLHDIEIVGISANG---DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG----WNHVLVLTGD 297 (442)
Q Consensus 225 ~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G----~~~~~~l~~~ 297 (442)
....+ ......|..++... ...+.-..||.|.+|-....... ..........+..+... ..+.+.-..|
T Consensus 132 ~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 132 LEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS---EEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred hhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc---ceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 00111 11223566666543 23444567899999975322111 00001122334444332 2345556788
Q ss_pred CcEEEEeC
Q 013470 298 GEVLMLGG 305 (442)
Q Consensus 298 G~vy~~G~ 305 (442)
|.|..|-.
T Consensus 208 ~~i~iWd~ 215 (304)
T 2ynn_A 208 LTIKIWDY 215 (304)
T ss_dssp SEEEEEET
T ss_pred CeEEEEeC
Confidence 99999964
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=26.88 E-value=3.9e+02 Score=24.86 Aligned_cols=167 Identities=8% Similarity=-0.047 Sum_probs=79.8
Q ss_pred eEEEEeecCc---eEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCC---ceEEEEeecCCC
Q 013470 127 TITHISAGWN---HSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMR---HSLVLLKDCLGN 200 (442)
Q Consensus 127 ~i~~vs~G~~---~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~---h~~~lt~~~~~G 200 (442)
.|..++.... ..+.-+.+|.|++|-........ .......+..........|..++.... +.+.-.. +|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg 204 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD---DH 204 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC--CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT---TS
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc--CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC---CC
Confidence 3666665543 33444678999999754321100 000011121111112234555554433 2333333 78
Q ss_pred eeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecC---CeEEEEcCCCcEEEeeCCCCCCCCCCCccccCC
Q 013470 201 QVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG---DRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPS 277 (442)
Q Consensus 201 ~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~ 277 (442)
.|+.|-....... .....+..........|..++... ...+....+|.|++|-........ ........
T Consensus 205 ~i~vwd~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~ 276 (430)
T 2xyi_A 205 TICLWDINATPKE-------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-PSHTVDAH 276 (430)
T ss_dssp CEEEEETTSCCBG-------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-CSEEEECC
T ss_pred eEEEEeCCCCCCC-------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-ceeEeecC
Confidence 9999965432110 111112222222334577777643 344455689999999765432110 00011123
Q ss_pred CCCeeEEEeCC--C-eEEEEECCCcEEEEeCC
Q 013470 278 SLSFSQAALGW--N-HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 278 ~~~i~~i~~G~--~-~~~~l~~~G~vy~~G~n 306 (442)
...|..++... . ..+.-..+|.|..|-..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 45666776643 2 34445678889888654
No 119
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=25.05 E-value=2.6e+02 Score=22.26 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=58.3
Q ss_pred ceEEEEeecC-ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeC-CCceEEEEeecCCCeee
Q 013470 126 YTITHISAGW-NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG-MRHSLVLLKDCLGNQVY 203 (442)
Q Consensus 126 ~~i~~vs~G~-~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G-~~h~~~lt~~~~~G~vy 203 (442)
.+.+++.|-. .+-+-+..||+|-.-.... ....-..+.... ..++.|.|- ....+++.. +|+||
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~-~G~V~L~g~~sg~yL~mn~---~G~l~ 95 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG-NGEVLLKSTETGQYLRINP---DGTVD 95 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE-TTEEEEEETTTTEEEEECT---TSBEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc-CCEEEEEEecCCEEEeECC---CCCEe
Confidence 4678888865 5666788899998654321 111111222211 357888875 456777777 89999
Q ss_pred eeCCCCCCCCCCCCCCCceeecCeEe-eccCCCcEEEEEecCCeEEEEcCCCcEEEe
Q 013470 204 GFGSGKRGQLGVSKDRIRSVSLPQVT-IGLHDIEIVGISANGDRSAALSAEGHLYTW 259 (442)
Q Consensus 204 ~wG~n~~gqlg~~~~~~~~~~~p~~v-~~~~~~~i~~i~~g~~~s~~lt~~G~vy~w 259 (442)
+--.. .. ....-..+ ...-..-|..+. ...-+|++++|++|.-
T Consensus 96 Gs~~~----------t~-ecsflEi~~en~y~v~i~g~~--sg~YLamnk~Grlygs 139 (142)
T 3p6j_A 96 GTRDR----------SD-THIQFQISPEGNGEVLLKSTE--TGQYLRINPDGTVDGT 139 (142)
T ss_dssp EECCT----------TC-GGGCEEEEECSTTCEEEEETT--TCCEEEECTTSBEEEE
T ss_pred ecccC----------CC-CceEEEEEeecCcEEEEEEec--CCEEEEECCCcCCccC
Confidence 75221 00 01111111 111111222222 2358999999999964
No 120
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=24.16 E-value=1.8e+02 Score=26.38 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=12.7
Q ss_pred CCceEEEEeecCCCeeeeeCC
Q 013470 187 MRHSLVLLKDCLGNQVYGFGS 207 (442)
Q Consensus 187 ~~h~~~lt~~~~~G~vy~wG~ 207 (442)
..|++++ . +++||.+|-
T Consensus 110 ~~~~~~~-~---~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-H---NGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-E---TTEEEEEEC
T ss_pred ccceEEE-E---CCEEEEEeC
Confidence 3566666 5 799999985
No 121
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.56 E-value=4.1e+02 Score=24.01 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=114.3
Q ss_pred cCCCCcEEE--EEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeec-----C
Q 013470 63 LSSLSSVSM--LACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG-----W 135 (442)
Q Consensus 63 ~~~~~~i~~--I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G-----~ 135 (442)
+.+...+.. ++....+.+++|+ .|++|..-...--..+.... -......+.+.++ .+|+.+... .
T Consensus 43 lke~D~l~~~~~~~~~~~ll~~T~-----~G~~~~~~~~~ip~~~r~~~-G~~i~~~l~l~~~--e~i~~~~~~~~~~~~ 114 (312)
T 1suu_A 43 LNDGDEIVIALCVNTHDYLFMISN-----EGKLYLINAYEIKDSSRASK-GQNISELINLGDQ--EEILTIKNSKDLTDD 114 (312)
T ss_dssp CCTTCCEEEEEEEETTCEEEEEET-----TSEEEEEEGGGSCC--------CBGGGTSCCCTT--CCEEEEEEESCCCTT
T ss_pred cCCCCEEEEEEEECCCCEEEEEEC-----CCeEEEEEHHHCCCCCccCC-CcChhhccCCCCC--CEEEEEEEeccCCCC
Confidence 344445555 4456677899999 99999987543222221110 0111223333344 567777654 3
Q ss_pred ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEE-eecCCCceEEEEe--CCCceEEEEeecCCCeeeeeCCCCCCC
Q 013470 136 NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKV-SSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSGKRGQ 212 (442)
Q Consensus 136 ~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v-~~~~~~~I~~I~~--G~~h~~~lt~~~~~G~vy~wG~n~~gq 212 (442)
.+.+++|++|.++-.-...+-.. . ..-... ...++..++.+.. +.++.+++|+ +|.+.-+-..+.-.
T Consensus 115 ~~ll~~T~~G~~kr~~l~~~~~~---r----~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~---~G~~~r~~~~ev~~ 184 (312)
T 1suu_A 115 AYLLLTTASGKIARFESTDFKAV---K----SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSK---KGSAFIFNSRDVRL 184 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEET---TSEEEEEEGGGSCB
T ss_pred CEEEEEeCCCeEEEEEHHHhhcc---C----CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeC---CCcEEEEEHHHccc
Confidence 45788899999998764433110 0 011111 1112345655443 5667888898 99988876655444
Q ss_pred CCCCCCCCceeecCeEeeccCCCcEEEEEe--cCCeEEEEcCCCcEEEeeCCCCCC-----CCCCCcccc-CCCCCeeEE
Q 013470 213 LGVSKDRIRSVSLPQVTIGLHDIEIVGISA--NGDRSAALSAEGHLYTWGRGFNST-----SDVNCPQSL-PSSLSFSQA 284 (442)
Q Consensus 213 lg~~~~~~~~~~~p~~v~~~~~~~i~~i~~--g~~~s~~lt~~G~vy~wG~~~~~~-----~~~~~p~~i-~~~~~i~~i 284 (442)
.|+.......... ..+..++.+.. ...+.++++++|.+...-...+.. .+....... .....+..+
T Consensus 185 ~gR~~~Gv~~i~L------~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~ 258 (312)
T 1suu_A 185 TNRGTQGVCGMKL------KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 258 (312)
T ss_dssp CCTTBCCEECCCC------CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEE
T ss_pred cCCCCCCeEeEEe------CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEE
Confidence 4443211111111 12335555433 334577788888866665433321 122222211 122334432
Q ss_pred --EeCCCeEEEEECCCcEEEEeCCCCc
Q 013470 285 --ALGWNHVLVLTGDGEVLMLGGSHHG 309 (442)
Q Consensus 285 --~~G~~~~~~l~~~G~vy~~G~n~~g 309 (442)
.......++++..|++.-.-.+..-
T Consensus 259 ~~~~~~~~l~~~t~~g~~~r~~~~~i~ 285 (312)
T 1suu_A 259 IAVSEDDEILLVSKRSKALRTVAGKVS 285 (312)
T ss_dssp EEECTTCEEEEEETTCEEEEEEGGGSC
T ss_pred EEeCCCCEEEEEeCCCeEEEEEcccCC
Confidence 2355667788888877766554443
No 122
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=23.44 E-value=3.8e+02 Score=23.60 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=78.7
Q ss_pred eeecCCCcceEEEEeecC---ceEEEEEeCCCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEE--
Q 013470 118 VTFFDGHRYTITHISAGW---NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLV-- 192 (442)
Q Consensus 118 i~~~~~~~~~i~~vs~G~---~~s~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~-- 192 (442)
...+..+...|..|+... ...+.-..|+.|..|-.....+ ....|.....--...|..++...+...+
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-------KFGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-------EEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-------cccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 334455556688877643 3444456789999995321000 0011111111122456666655443333
Q ss_pred EEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCC
Q 013470 193 LLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVN 270 (442)
Q Consensus 193 lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~ 270 (442)
-.. |+.|..|-.... . ....+.. ....|..++.... +.+.-..||.|.+|-... + .
T Consensus 83 ~s~---D~~v~~wd~~~~----------~---~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~---~ 140 (319)
T 3frx_A 83 ASW---DKTLRLWDVATG----------E---TYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--Q---C 140 (319)
T ss_dssp EET---TSEEEEEETTTT----------E---EEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--C---E
T ss_pred EeC---CCEEEEEECCCC----------C---eeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C---e
Confidence 334 788988843210 0 0111111 2235666665444 344446788999996431 1 1
Q ss_pred CccccCCCCCeeEEEeCCC--------eEEEEECCCcEEEEeCC
Q 013470 271 CPQSLPSSLSFSQAALGWN--------HVLVLTGDGEVLMLGGS 306 (442)
Q Consensus 271 ~p~~i~~~~~i~~i~~G~~--------~~~~l~~~G~vy~~G~n 306 (442)
..........|..+..... ..+.-..|+.|..|-..
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 1111122334555554332 34555678899999654
No 123
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=23.27 E-value=3.9e+02 Score=23.66 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=88.3
Q ss_pred CcEEEEEeCCceeEEEeCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceE--EEEeecCceEEEEEeC
Q 013470 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTI--THISAGWNHSGFVSDS 144 (442)
Q Consensus 67 ~~i~~I~~G~~h~~~lt~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i--~~vs~G~~~s~~lt~~ 144 (442)
..|..++......++++.+. |+.|..|-.... ..+..+......+ ..++....+.+.-..+
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~---D~~i~lWd~~~~--------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSL---DAHIRLWDLENG--------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp SCEEEEEECSSSSEEEEEET---TSEEEEEETTTT--------------EEEEEEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred CCEEEEEECCCCCEEEEEeC---CCcEEEEECCCC--------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 46777766555444443311 889999964321 1111111111122 2222233344444567
Q ss_pred CCEEEeCCCCCcccCCCCCCCcccceEEeecCCCceEEEEeCCCce-EE-EEeecCCCeeeeeCCCCCCCCCCCCCCCce
Q 013470 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS-LV-LLKDCLGNQVYGFGSGKRGQLGVSKDRIRS 222 (442)
Q Consensus 145 g~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~-~~-lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~ 222 (442)
|.|..|...... ....+. .....|..++...+-. ++ -.. +|.|+.|-.... .
T Consensus 144 g~v~i~~~~~~~-----------~~~~~~-~~~~~v~~~~~spdg~~lasg~~---dg~i~iwd~~~~----------~- 197 (321)
T 3ow8_A 144 GKVNIFGVESGK-----------KEYSLD-TRGKFILSIAYSPDGKYLASGAI---DGIINIFDIATG----------K- 197 (321)
T ss_dssp SEEEEEETTTCS-----------EEEEEE-CSSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTT----------E-
T ss_pred CcEEEEEcCCCc-----------eeEEec-CCCceEEEEEECCCCCEEEEEcC---CCeEEEEECCCC----------c-
Confidence 888888643210 111111 1223566666554432 22 233 788888843210 0
Q ss_pred eecCeEeeccCCCcEEEEEecCC--eEEEEcCCCcEEEeeCCCCCCCCCCCcccc-CCCCCeeEEEeC--CCeEEEEECC
Q 013470 223 VSLPQVTIGLHDIEIVGISANGD--RSAALSAEGHLYTWGRGFNSTSDVNCPQSL-PSSLSFSQAALG--WNHVLVLTGD 297 (442)
Q Consensus 223 ~~~p~~v~~~~~~~i~~i~~g~~--~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i-~~~~~i~~i~~G--~~~~~~l~~~ 297 (442)
....+. .....|..++.... ..+.-..+|.|++|-...... ...+ .....|..++.. ..+.+.-..|
T Consensus 198 --~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~sp~~~~l~s~s~D 269 (321)
T 3ow8_A 198 --LLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-----AGTLSGHASWVLNVAFCPDDTHFVSSSSD 269 (321)
T ss_dssp --EEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred --EEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-----eEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 001111 11224555554433 344446788899996532211 1111 123456666654 3455556778
Q ss_pred CcEEEEeC
Q 013470 298 GEVLMLGG 305 (442)
Q Consensus 298 G~vy~~G~ 305 (442)
|.|..|-.
T Consensus 270 ~~v~iwd~ 277 (321)
T 3ow8_A 270 KSVKVWDV 277 (321)
T ss_dssp SCEEEEET
T ss_pred CcEEEEeC
Confidence 88988854
No 124
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=22.73 E-value=4.7e+02 Score=24.41 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred EEEEeCCCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeeccCCCcEEEEEe-----cCCeEEEEcCCCc
Q 013470 181 HQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISA-----NGDRSAALSAEGH 255 (442)
Q Consensus 181 ~~I~~G~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~i~~-----g~~~s~~lt~~G~ 255 (442)
..++.+.++.+++|+ .|++|-+-..+.-..++. ..-.+....+....+.+|+.+.. ...+.+++|++|.
T Consensus 51 ~~~~~t~d~ll~fT~---~G~~~~~~~~eip~~~r~---a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 124 (370)
T 3l6v_A 51 LWLVNTHDTLLTFTS---SGKVFWLPVHQLPEAGSN---ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGT 124 (370)
T ss_dssp EEEECTTCEEEEEET---TSEEEEEEGGGSCBCCTT---SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred EEEecCCCEEEEEeC---CCeEEEEEHHHCcCCCcc---cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe
Q ss_pred EEEeeCCCCCC--CCCCCccccCCCCCeeEEEeCC--CeEEEEECCCcEEEEeCCCCcccCCCCCCCCCCccccceeeec
Q 013470 256 LYTWGRGFNST--SDVNCPQSLPSSLSFSQAALGW--NHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVS 331 (442)
Q Consensus 256 vy~wG~~~~~~--~~~~~p~~i~~~~~i~~i~~G~--~~~~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~ 331 (442)
+.-.-...+.. ..-..-..+.....+..+..-. .+.++++++|++.-+-...--.+|...... .-+.
T Consensus 125 vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV---------~~i~ 195 (370)
T 3l6v_A 125 VKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV---------RGIR 195 (370)
T ss_dssp EEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE---------ECCC
T ss_pred EEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCe---------eeEE
Q ss_pred cCCCccEEEEeecC-------------------------------------CeeEEEeCcccceeeeEeccCCCCCccce
Q 013470 332 NLDGVKVIQIAAGA-------------------------------------EHSAVVTGKFHWVRLFIISYTPFFPPFFI 374 (442)
Q Consensus 332 ~~~~~~I~~I~~G~-------------------------------------~~s~~l~~~~~~~~~~~~~~~~~~~~~~~ 374 (442)
.-.+..|+.+..-. .+.+++|
T Consensus 196 L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vT---------------------- 253 (370)
T 3l6v_A 196 LAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTAT---------------------- 253 (370)
T ss_dssp CCTTCCEEEEEEECCC-----------------------------------CEEEEEE----------------------
T ss_pred eCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEee----------------------
Q ss_pred eeeccCC
Q 013470 375 NVIAENR 381 (442)
Q Consensus 375 ~~~~~~g 381 (442)
+.|
T Consensus 254 ----e~G 256 (370)
T 3l6v_A 254 ----ENG 256 (370)
T ss_dssp ----TTS
T ss_pred ----CCC
No 125
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=22.46 E-value=3.7e+02 Score=23.02 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=0.0
Q ss_pred eeEEE-eCCCcccCCeEEEEeCCCCCCCCCCCCcCeecceEeeecCCCcceEEEEeecCceEEEEEe--CCCEEEeCCCC
Q 013470 78 HVLAL-TSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSD--SGCLFTCGDGT 154 (442)
Q Consensus 78 h~~~l-t~~~~~~dg~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~vs~G~~~s~~lt~--~g~vy~~G~n~ 154 (442)
+.+++ .. ++++|+.+....+.+-.-+ ........+..... ..+..|+....-.+++++ +++|+.|-.+.
T Consensus 80 ~~i~~~~~-----~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g 151 (286)
T 1q7f_A 80 NRVAVVRN-----SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL--QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG 151 (286)
T ss_dssp EEEEEETT-----TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC--SCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred eEEEEEcC-----CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC--CCceEEEEeCCCCEEEEECCCCEEEEEcCCC
Q ss_pred CcccCCCCCCCcccceEEeecCCCceEEEEeCCCceEEEEeecCCCe-eeeeCCCCCCCCCCCCCCCceeecCeEeeccC
Q 013470 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQ-VYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH 233 (442)
Q Consensus 155 ~gqlG~~~~~~~~~p~~v~~~~~~~I~~I~~G~~h~~~lt~~~~~G~-vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~~~ 233 (442)
.-..-.........|..+....+.++--...+......+.. +|+ +..++....
T Consensus 152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~---~g~~~~~~~~~g~----------------------- 205 (286)
T 1q7f_A 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY---EGQYLRQIGGEGI----------------------- 205 (286)
T ss_dssp CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET---TCCEEEEESCTTT-----------------------
T ss_pred CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC---CCCEEEEEccCCc-----------------------
Q ss_pred CCcEEEEEecCCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCCCe----EEEEECCCcEEEEeCCC
Q 013470 234 DIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNH----VLVLTGDGEVLMLGGSH 307 (442)
Q Consensus 234 ~~~i~~i~~g~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~~~----~~~l~~~G~vy~~G~n~ 307 (442)
...-..++++.+|++|+........+....+ ....+..+..+... .++++.+|++|+-..+.
T Consensus 206 --------~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~----~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~ 271 (286)
T 1q7f_A 206 --------TNYPIGVGINSNGEILIADNHNNFNLTIFTQ----DGQLISALESKVKHAQCFDVALMDDGSVVLASKDY 271 (286)
T ss_dssp --------SCSEEEEEECTTCCEEEEECSSSCEEEEECT----TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTT
T ss_pred --------cCCCcEEEECCCCCEEEEeCCCCEEEEEECC----CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCC
No 126
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=20.04 E-value=5.3e+02 Score=23.91 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=36.5
Q ss_pred CceEEEEeC--CCceEEEEeecCCCeeeeeCCCCCCCCCCCCCCCceeecCeEeec-cCCCcEEEEEec---CCeEEEEc
Q 013470 178 KNVHQIACG--MRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIG-LHDIEIVGISAN---GDRSAALS 251 (442)
Q Consensus 178 ~~I~~I~~G--~~h~~~lt~~~~~G~vy~wG~n~~gqlg~~~~~~~~~~~p~~v~~-~~~~~i~~i~~g---~~~s~~lt 251 (442)
.+|+.|+.. ....+|.... ||.|+.|-..... .+..+.. -....|..|+.. ....+.-.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~--dg~i~lWd~~~~~-------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSK--GGDIMLWNFGIKD-------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEET--TSCEEEECSSCCS-------------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCEEEEEeC--CCEEEEEECCCCC-------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 468888875 3345555433 8999999432110 1111111 112345565543 23444456
Q ss_pred CCCcEEEeeC
Q 013470 252 AEGHLYTWGR 261 (442)
Q Consensus 252 ~~G~vy~wG~ 261 (442)
.||.|.+|-.
T Consensus 185 ~D~~v~iwd~ 194 (435)
T 4e54_B 185 MEGTTRLQDF 194 (435)
T ss_dssp SSSCEEEEET
T ss_pred CCCEEEEeec
Confidence 7889999954
No 127
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=20.04 E-value=5.3e+02 Score=23.91 Aligned_cols=57 Identities=11% Similarity=-0.069 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcEEEeeCCCCCCCCCCCccccCCCCCeeEEEeCC--CeEE-EEECCCcEEEEeC
Q 013470 244 GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGW--NHVL-VLTGDGEVLMLGG 305 (442)
Q Consensus 244 ~~~s~~lt~~G~vy~wG~~~~~~~~~~~p~~i~~~~~i~~i~~G~--~~~~-~l~~~G~vy~~G~ 305 (442)
....+.-..+|.|+.|-... +. ..........|..|+... .+.+ .-..||.|..|-.
T Consensus 221 ~~~l~~g~~dg~i~~wd~~~--~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 221 SRMVVTGDNVGNVILLNMDG--KE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp TTEEEEECSSSBEEEEESSS--CB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred CCEEEEEeCCCcEeeeccCc--ce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 33444556789999996431 11 011112345677777542 2333 3457888888853
Done!