Query 013471
Match_columns 442
No_of_seqs 537 out of 4875
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-38 4E-43 295.8 24.0 208 160-382 2-210 (261)
2 1oy3_D Transcription factor in 100.0 6.8E-39 2.3E-43 300.0 21.9 213 155-381 3-268 (282)
3 3b7b_A Euchromatic histone-lys 100.0 2E-38 6.9E-43 289.4 24.4 217 153-383 3-222 (237)
4 3d9h_A CDNA FLJ77766, highly s 100.0 2.9E-38 1E-42 297.0 24.4 212 154-380 52-264 (285)
5 1k1a_A B-cell lymphoma 3-encod 100.0 3.7E-38 1.3E-42 288.2 23.9 215 155-383 3-228 (241)
6 2f8y_A Notch homolog 1, transl 100.0 2E-37 6.8E-42 280.2 26.3 196 157-352 21-219 (223)
7 1yyh_A HN1;, notch 1, ankyrin 100.0 9.6E-39 3.3E-43 295.0 17.9 190 158-347 54-246 (253)
8 2rfa_A Transient receptor pote 100.0 7.6E-38 2.6E-42 284.8 21.8 192 161-352 3-225 (232)
9 3aji_A 26S proteasome non-ATPa 100.0 1.1E-37 3.9E-42 283.3 21.9 196 154-349 33-230 (231)
10 3ljn_A Hypothetical protein; a 100.0 7.9E-38 2.7E-42 304.4 22.1 243 152-405 11-314 (364)
11 3utm_A Tankyrase-1; tankyrase, 100.0 5.6E-37 1.9E-41 295.9 26.8 210 143-352 40-308 (351)
12 4b93_B Ankyrin repeat domain-c 100.0 9.8E-38 3.3E-42 290.7 20.0 214 156-383 6-230 (269)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 4.8E-37 1.6E-41 283.6 23.3 192 167-358 29-224 (253)
14 1wdy_A 2-5A-dependent ribonucl 100.0 4.6E-37 1.6E-41 287.5 23.5 225 158-405 36-278 (285)
15 3aji_A 26S proteasome non-ATPa 100.0 8E-37 2.8E-41 277.7 22.4 209 161-383 6-217 (231)
16 2dzn_A Probable 26S proteasome 100.0 1.8E-36 6.3E-41 274.6 23.5 207 161-381 2-218 (228)
17 1k1a_A B-cell lymphoma 3-encod 100.0 4E-37 1.4E-41 281.3 18.3 200 150-349 35-241 (241)
18 3hra_A Ankyrin repeat family p 100.0 4.4E-36 1.5E-40 266.8 23.3 188 160-347 4-201 (201)
19 3kea_A K1L; tropism, ANK repea 100.0 3.7E-37 1.3E-41 289.5 16.9 198 153-353 23-224 (285)
20 1ikn_D Protein (I-kappa-B-alph 100.0 8.7E-38 3E-42 285.3 11.5 196 156-351 3-211 (236)
21 2etb_A Transient receptor pote 100.0 4.7E-37 1.6E-41 283.9 15.5 192 161-352 2-249 (256)
22 2xai_A ASB-9, ankyrin repeat a 100.0 2.2E-36 7.7E-41 280.4 19.3 231 151-400 26-258 (261)
23 1n11_A Ankyrin; clathrin, BAND 100.0 3.1E-36 1.1E-40 300.3 21.1 200 153-352 6-207 (437)
24 4gpm_A Engineered protein OR26 100.0 1.3E-35 4.4E-40 256.3 21.6 156 163-349 6-161 (169)
25 1s70_B 130 kDa myosin-binding 100.0 6.7E-36 2.3E-40 282.4 21.0 210 158-381 37-275 (299)
26 1wdy_A 2-5A-dependent ribonucl 100.0 4.3E-35 1.5E-39 274.1 26.2 203 150-352 61-281 (285)
27 4b93_B Ankyrin repeat domain-c 100.0 7.6E-37 2.6E-41 284.6 13.8 196 154-349 45-244 (269)
28 2fo1_E LIN-12 protein; beta-ba 100.0 7.7E-36 2.6E-40 291.4 21.2 201 149-349 154-371 (373)
29 3eu9_A Huntingtin-interacting 100.0 1.9E-35 6.5E-40 269.5 20.5 227 156-405 4-235 (240)
30 2fo1_E LIN-12 protein; beta-ba 100.0 9.5E-37 3.3E-41 297.8 12.5 227 154-403 117-369 (373)
31 1n11_A Ankyrin; clathrin, BAND 100.0 2E-35 6.9E-40 294.4 21.8 216 154-383 172-389 (437)
32 3b7b_A Euchromatic histone-lys 100.0 5.6E-35 1.9E-39 266.6 22.3 195 151-345 34-231 (237)
33 3utm_A Tankyrase-1; tankyrase, 100.0 2.7E-35 9.4E-40 284.0 21.1 229 154-405 17-305 (351)
34 2pnn_A Transient receptor pote 100.0 4.4E-36 1.5E-40 280.2 15.0 195 155-349 7-258 (273)
35 4g8k_A 2-5A-dependent ribonucl 100.0 3.5E-35 1.2E-39 282.6 21.7 188 158-345 22-260 (337)
36 3d9h_A CDNA FLJ77766, highly s 100.0 4.3E-35 1.5E-39 275.4 20.4 195 151-349 82-279 (285)
37 2f8y_A Notch homolog 1, transl 100.0 1.6E-35 5.5E-40 267.6 15.4 211 172-405 2-216 (223)
38 1oy3_D Transcription factor in 100.0 5.3E-35 1.8E-39 273.5 19.3 182 154-335 38-269 (282)
39 4g8k_A 2-5A-dependent ribonucl 100.0 9.4E-35 3.2E-39 279.6 20.8 227 151-405 48-326 (337)
40 3eu9_A Huntingtin-interacting 100.0 3.6E-34 1.2E-38 261.0 22.7 201 150-350 31-236 (240)
41 3jxi_A Vanilloid receptor-rela 100.0 1.3E-35 4.5E-40 274.8 13.1 193 160-352 4-253 (260)
42 2dzn_A Probable 26S proteasome 100.0 2.9E-34 9.8E-39 260.2 19.7 188 155-345 30-226 (228)
43 1s70_B 130 kDa myosin-binding 100.0 3.1E-34 1E-38 271.0 15.5 195 151-345 63-286 (299)
44 3kea_A K1L; tropism, ANK repea 100.0 2.3E-34 7.9E-39 270.4 13.7 193 152-353 55-250 (285)
45 4hbd_A KN motif and ankyrin re 100.0 1.5E-33 5E-38 263.7 14.8 189 160-348 75-274 (276)
46 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-31 3.8E-36 231.9 21.4 159 158-347 11-169 (169)
47 2rfm_A Putative ankyrin repeat 100.0 3.7E-32 1.3E-36 239.9 18.6 161 188-348 29-191 (192)
48 2rfa_A Transient receptor pote 100.0 4.2E-32 1.4E-36 246.7 18.1 200 193-409 2-226 (232)
49 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.7E-32 1.9E-36 231.7 17.8 157 161-349 5-162 (162)
50 3v30_A DNA-binding protein rfx 100.0 5.2E-32 1.8E-36 234.5 16.0 166 162-327 3-171 (172)
51 3v31_A Ankyrin repeat family A 100.0 1.7E-31 5.9E-36 230.1 18.5 160 161-351 3-162 (167)
52 1ikn_D Protein (I-kappa-B-alph 100.0 2.9E-32 9.8E-37 248.6 11.7 181 153-333 37-228 (236)
53 1sw6_A Regulatory protein SWI6 100.0 3.1E-32 1E-36 261.0 11.8 179 149-335 118-327 (327)
54 2rfm_A Putative ankyrin repeat 100.0 2.3E-31 7.8E-36 234.8 16.3 165 150-314 24-190 (192)
55 1awc_B Protein (GA binding pro 100.0 1.3E-30 4.4E-35 221.3 20.1 151 161-343 2-152 (153)
56 3ljn_A Hypothetical protein; a 100.0 5.3E-32 1.8E-36 263.2 12.3 166 184-349 10-198 (364)
57 3v31_A Ankyrin repeat family A 100.0 4.9E-31 1.7E-35 227.2 17.1 136 151-317 26-161 (167)
58 2etb_A Transient receptor pote 100.0 9.3E-32 3.2E-36 248.4 12.6 199 193-407 1-248 (256)
59 3twr_A Tankyrase-2; ankyrin re 100.0 7.8E-31 2.7E-35 225.5 16.8 159 158-348 5-164 (165)
60 3v30_A DNA-binding protein rfx 100.0 1.2E-30 3.9E-35 226.0 17.4 159 194-352 2-163 (172)
61 1sw6_A Regulatory protein SWI6 100.0 1.2E-31 4.2E-36 256.9 12.3 197 163-381 99-326 (327)
62 3hra_A Ankyrin repeat family p 100.0 6.1E-30 2.1E-34 227.0 21.3 171 144-314 22-201 (201)
63 3f6q_A Integrin-linked protein 100.0 2.8E-30 9.5E-35 225.2 17.4 161 160-351 4-165 (179)
64 1bd8_A P19INK4D CDK4/6 inhibit 100.0 8.6E-30 2.9E-34 216.7 19.5 153 161-346 2-155 (156)
65 2pnn_A Transient receptor pote 100.0 3.4E-31 1.2E-35 247.0 10.9 206 183-404 2-257 (273)
66 2vge_A RELA-associated inhibit 100.0 1.6E-33 5.4E-38 255.9 -5.6 185 155-342 15-206 (229)
67 3f6q_A Integrin-linked protein 100.0 7.9E-30 2.7E-34 222.4 16.5 134 193-357 4-138 (179)
68 4gpm_A Engineered protein OR26 100.0 6.6E-29 2.3E-33 214.1 16.7 139 150-319 26-164 (169)
69 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.9E-30 6.6E-35 237.2 6.9 176 159-335 3-192 (239)
70 3jxi_A Vanilloid receptor-rela 100.0 1.1E-29 3.8E-34 234.9 11.4 203 191-409 2-254 (260)
71 4hbd_A KN motif and ankyrin re 100.0 9E-29 3.1E-33 231.1 16.4 162 153-314 103-273 (276)
72 1ycs_B 53BP2, P53BP2; ankyrin 100.0 5.5E-29 1.9E-33 227.5 10.5 162 191-353 2-168 (239)
73 1d9s_A Cyclin-dependent kinase 100.0 3.2E-28 1.1E-32 202.2 14.0 134 184-349 2-136 (136)
74 3t8k_A Uncharacterized protein 100.0 8E-29 2.7E-33 217.2 10.4 161 161-348 6-178 (186)
75 1bi7_B P16INK4A, MTS1, multipl 99.9 7.9E-28 2.7E-32 204.8 11.4 141 190-331 8-151 (156)
76 2vge_A RELA-associated inhibit 99.9 3E-29 1E-33 227.7 2.5 192 177-383 1-200 (229)
77 1d9s_A Cyclin-dependent kinase 99.9 5.6E-27 1.9E-31 194.7 11.1 132 153-316 4-136 (136)
78 2jab_A H10-2-G3; HER2, darpin, 99.9 6.3E-26 2.1E-30 188.3 15.2 62 286-347 75-136 (136)
79 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-25 5E-30 182.8 16.8 126 193-349 1-126 (126)
80 2aja_A Ankyrin repeat family p 99.9 1.8E-28 6.2E-33 237.9 -1.4 181 160-348 91-343 (376)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-26 4E-31 197.5 9.9 142 156-298 7-151 (156)
82 2jab_A H10-2-G3; HER2, darpin, 99.9 1.7E-25 5.9E-30 185.7 16.6 128 156-314 9-136 (136)
83 3c5r_A BARD-1, BRCA1-associate 99.9 1.2E-26 4.1E-31 192.9 9.1 134 184-349 1-134 (137)
84 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.8E-26 1.6E-30 196.4 12.7 148 191-383 11-158 (169)
85 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.1E-26 1.1E-30 195.8 11.2 158 193-404 4-161 (162)
86 2aja_A Ankyrin repeat family p 99.9 4.7E-28 1.6E-32 234.9 -2.4 175 161-350 65-251 (376)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.6E-25 1.2E-29 180.5 15.2 125 161-316 2-126 (126)
88 3deo_A Signal recognition part 99.9 8.3E-27 2.9E-31 204.0 4.8 140 158-346 41-181 (183)
89 3twr_A Tankyrase-2; ankyrin re 99.9 6.1E-25 2.1E-29 188.5 14.4 145 191-380 5-150 (165)
90 1awc_B Protein (GA binding pro 99.9 7.3E-25 2.5E-29 185.7 12.2 143 195-383 3-145 (153)
91 3ui2_A Signal recognition part 99.9 1.4E-24 4.7E-29 198.9 13.1 143 158-349 42-185 (244)
92 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-24 5.9E-29 204.3 12.5 140 161-337 151-299 (301)
93 3ui2_A Signal recognition part 99.9 2.6E-24 8.9E-29 197.1 13.3 118 151-316 67-185 (244)
94 3deo_A Signal recognition part 99.9 5.8E-24 2E-28 185.9 14.9 88 151-238 66-154 (183)
95 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1E-23 3.5E-28 179.0 15.0 130 151-313 26-155 (156)
96 3aaa_C Myotrophin, protein V-1 99.9 4.3E-24 1.5E-28 173.9 11.2 110 192-332 5-114 (123)
97 3t8k_A Uncharacterized protein 99.9 1.1E-24 3.6E-29 190.9 7.5 137 159-321 36-184 (186)
98 3ehr_A Osteoclast-stimulating 99.9 2.4E-24 8.1E-29 194.3 9.6 137 157-324 69-206 (222)
99 3c5r_A BARD-1, BRCA1-associate 99.9 2.5E-24 8.5E-29 178.8 8.3 129 157-316 6-134 (137)
100 3aaa_C Myotrophin, protein V-1 99.9 1.4E-23 4.8E-28 170.9 12.4 119 158-307 4-122 (123)
101 3ehr_A Osteoclast-stimulating 99.9 7.4E-24 2.5E-28 191.0 9.1 132 191-352 70-201 (222)
102 1dcq_A PYK2-associated protein 99.9 1.1E-22 3.7E-27 189.8 14.8 191 157-351 62-265 (278)
103 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-22 4.4E-27 191.5 15.1 140 224-383 148-298 (301)
104 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-22 7E-27 203.6 15.9 127 162-319 133-268 (497)
105 3jue_A Arfgap with coiled-coil 99.9 7.1E-22 2.4E-26 190.8 15.0 143 161-334 199-347 (368)
106 1dcq_A PYK2-associated protein 99.9 2.7E-21 9.1E-26 180.4 17.9 131 156-317 125-264 (278)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.1E-21 3.7E-26 151.3 12.6 92 258-349 2-93 (93)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.1E-21 3.6E-26 151.3 12.1 92 161-252 2-93 (93)
109 3lvq_E ARF-GAP with SH3 domain 99.9 4.5E-21 1.5E-25 193.8 15.1 124 229-352 134-268 (497)
110 3jue_A Arfgap with coiled-coil 99.8 5.8E-21 2E-25 184.4 14.5 125 194-349 199-326 (368)
111 2l6b_A NR1C; ankyrin, consensu 99.8 2.6E-21 9E-26 155.3 8.3 109 189-328 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 3.8E-20 1.3E-24 148.5 6.3 102 157-258 5-106 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.1E-18 7.3E-23 137.1 11.8 94 153-246 16-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 4.3E-18 1.5E-22 135.4 11.1 87 257-343 23-109 (110)
115 2ptm_A Hyperpolarization-activ 97.8 3.6E-05 1.2E-09 66.9 7.7 75 62-136 50-124 (198)
116 3bpz_A Potassium/sodium hyperp 97.8 3.4E-05 1.2E-09 67.3 6.3 76 61-136 50-125 (202)
117 3ukn_A Novel protein similar t 97.7 7.5E-05 2.6E-09 65.6 7.7 73 63-136 56-128 (212)
118 4f8a_A Potassium voltage-gated 97.4 0.00019 6.6E-09 59.6 5.7 74 63-136 7-80 (160)
119 3ocp_A PRKG1 protein; serine/t 95.9 0.0065 2.2E-07 48.9 4.4 69 68-136 8-76 (139)
120 1orq_C Potassium channel; volt 95.6 0.0055 1.9E-07 54.1 3.0 51 9-74 37-87 (223)
121 1wgp_A Probable cyclic nucleot 95.4 0.02 6.7E-07 45.7 5.5 54 83-136 6-59 (137)
122 1vp6_A CNBD, cyclic-nucleotide 95.3 0.025 8.5E-07 45.1 5.6 55 82-136 10-64 (138)
123 3pna_A CAMP-dependent protein 94.9 0.041 1.4E-06 44.9 6.0 59 78-136 33-91 (154)
124 3mdp_A Cyclic nucleotide-bindi 94.9 0.022 7.6E-07 45.6 4.3 54 82-135 5-58 (142)
125 2pqq_A Putative transcriptiona 94.9 0.042 1.4E-06 44.3 6.0 54 82-135 4-57 (149)
126 3idb_B CAMP-dependent protein 94.7 0.038 1.3E-06 45.5 5.2 60 77-136 32-91 (161)
127 2z69_A DNR protein; beta barre 94.6 0.051 1.7E-06 44.1 5.8 54 82-135 11-64 (154)
128 3shr_A CGMP-dependent protein 94.5 0.028 9.5E-07 51.7 4.4 69 68-136 24-92 (299)
129 3gyd_A CNMP-BD protein, cyclic 94.2 0.068 2.3E-06 45.3 5.9 58 78-135 34-91 (187)
130 4ev0_A Transcription regulator 93.2 0.091 3.1E-06 45.4 5.0 50 86-135 2-51 (216)
131 3of1_A CAMP-dependent protein 93.1 0.11 3.7E-06 45.9 5.5 55 82-136 6-60 (246)
132 2d93_A RAP guanine nucleotide 93.0 0.072 2.5E-06 42.2 3.7 55 82-136 15-70 (134)
133 3dkw_A DNR protein; CRP-FNR, H 92.9 0.12 4.1E-06 45.0 5.3 55 82-136 8-62 (227)
134 3dv8_A Transcriptional regulat 92.8 0.1 3.4E-06 45.3 4.7 53 83-135 3-55 (220)
135 4ava_A Lysine acetyltransferas 92.7 0.13 4.3E-06 48.1 5.5 55 82-136 12-66 (333)
136 3dn7_A Cyclic nucleotide bindi 92.5 0.12 3.9E-06 43.9 4.5 55 81-135 5-59 (194)
137 3e97_A Transcriptional regulat 92.3 0.11 3.7E-06 45.5 4.3 53 83-135 6-58 (231)
138 1zyb_A Transcription regulator 91.9 0.22 7.5E-06 43.7 5.7 55 81-135 16-72 (232)
139 3fx3_A Cyclic nucleotide-bindi 91.3 0.13 4.4E-06 45.2 3.6 55 81-135 9-63 (237)
140 2qcs_B CAMP-dependent protein 91.3 0.19 6.6E-06 45.7 4.9 58 79-136 35-92 (291)
141 3d0s_A Transcriptional regulat 91.3 0.12 4E-06 45.1 3.3 54 82-135 5-58 (227)
142 2gau_A Transcriptional regulat 91.0 0.19 6.5E-06 43.9 4.4 49 87-135 14-62 (232)
143 3of1_A CAMP-dependent protein 90.8 0.36 1.2E-05 42.4 6.0 58 78-135 120-177 (246)
144 3tnp_B CAMP-dependent protein 90.4 0.24 8.1E-06 48.0 4.8 59 77-135 139-197 (416)
145 4din_B CAMP-dependent protein 90.3 0.25 8.5E-06 47.2 4.8 58 79-136 126-183 (381)
146 3iwz_A CAP-like, catabolite ac 90.3 0.27 9.1E-06 42.8 4.7 54 82-135 10-63 (230)
147 2r9r_B Paddle chimera voltage 88.6 0.11 3.7E-06 51.8 0.8 49 11-73 239-288 (514)
148 2qcs_B CAMP-dependent protein 88.4 0.78 2.7E-05 41.5 6.4 59 77-135 151-209 (291)
149 1o7f_A CAMP-dependent RAP1 gua 88.0 0.88 3E-05 44.5 7.0 61 75-135 34-94 (469)
150 3beh_A MLL3241 protein; transm 87.7 0.11 3.7E-06 49.2 0.1 54 82-135 227-280 (355)
151 3shr_A CGMP-dependent protein 86.5 0.44 1.5E-05 43.4 3.6 59 77-135 151-209 (299)
152 4din_B CAMP-dependent protein 84.8 0.97 3.3E-05 43.0 5.2 59 77-135 242-300 (381)
153 2fmy_A COOA, carbon monoxide o 84.3 0.17 5.8E-06 43.9 -0.4 54 83-136 4-57 (220)
154 3tnp_B CAMP-dependent protein 83.4 0.99 3.4E-05 43.5 4.6 58 78-135 262-319 (416)
155 1ft9_A Carbon monoxide oxidati 83.0 0.14 4.9E-06 44.5 -1.4 52 85-136 2-53 (222)
156 3ryp_A Catabolite gene activat 81.1 1.2 4E-05 38.0 3.8 47 89-135 2-48 (210)
157 2dnf_A Doublecortin domain-con 80.4 1.4 4.7E-05 33.5 3.4 48 393-441 39-88 (108)
158 1o7f_A CAMP-dependent RAP1 gua 80.3 2 6.9E-05 41.8 5.6 55 82-136 336-391 (469)
159 4f7z_A RAP guanine nucleotide 79.7 2 6.8E-05 46.5 5.8 53 83-135 42-94 (999)
160 3cf6_E RAP guanine nucleotide 79.4 2.2 7.6E-05 44.0 5.8 57 80-136 29-86 (694)
161 1f2r_I Inhibitor of caspase-ac 75.2 2.8 9.6E-05 31.0 3.6 55 388-442 31-92 (100)
162 2eel_A Cell death activator CI 75.1 1.7 5.8E-05 31.7 2.4 53 390-442 24-81 (91)
163 4g26_A Pentatricopeptide repea 67.0 9.5 0.00032 37.6 6.7 143 162-311 30-198 (501)
164 1ors_C Potassium channel; volt 66.7 2.3 7.9E-05 33.5 1.8 46 13-73 39-84 (132)
165 1ibx_B Chimera of IGG binding 66.2 4.5 0.00015 31.9 3.2 51 392-442 80-137 (145)
166 3kcc_A Catabolite gene activat 65.0 4.4 0.00015 35.9 3.5 46 90-135 53-98 (260)
167 1d4b_A CIDE B, human cell deat 64.0 1.5 5.2E-05 33.7 0.2 57 386-442 46-106 (122)
168 2oz6_A Virulence factor regula 63.9 7.4 0.00025 32.6 4.6 41 95-135 2-42 (207)
169 2kyh_A KVAP, voltage-gated pot 50.6 7 0.00024 31.4 2.0 46 13-73 54-99 (147)
170 3e6c_C CPRK, cyclic nucleotide 50.2 5.5 0.00019 34.8 1.4 45 91-135 17-61 (250)
171 4g26_A Pentatricopeptide repea 43.5 46 0.0016 32.6 7.0 101 175-279 91-199 (501)
172 2bgc_A PRFA; bacterial infecti 41.1 22 0.00076 30.5 4.0 43 93-135 3-47 (238)
173 1o5l_A Transcriptional regulat 40.3 8 0.00027 32.8 0.8 47 89-135 5-51 (213)
174 3zrh_A Ubiquitin thioesterase 30.8 1.1E+02 0.0039 28.7 6.9 51 165-215 26-90 (454)
175 3la7_A Global nitrogen regulat 30.3 34 0.0012 29.4 3.4 40 96-135 30-72 (243)
176 4f7z_A RAP guanine nucleotide 27.9 50 0.0017 35.5 4.7 54 82-135 336-390 (999)
177 1ryj_A Unknown; beta/alpha pro 23.2 93 0.0032 20.9 3.8 42 394-439 24-65 (70)
178 2ddz_A 190AA long hypothetical 21.9 35 0.0012 28.2 1.6 12 426-437 104-115 (190)
179 3jxo_A TRKA-N domain protein; 21.6 40 0.0014 23.6 1.7 15 427-441 59-73 (86)
180 1gp8_A Protein (scaffolding pr 21.6 77 0.0026 18.7 2.5 18 328-345 17-34 (40)
181 1tyg_B YJBS; alpha beta barrel 20.6 1.2E+02 0.0042 21.6 4.1 49 386-439 26-82 (87)
No 1
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=295.78 Aligned_cols=208 Identities=25% Similarity=0.261 Sum_probs=192.9
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471 160 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239 (442)
Q Consensus 160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 239 (442)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471 240 DGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 318 (442)
Q Consensus 240 ~~iv~~Ll~~g~~~~~~-~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~ 318 (442)
.+++++|+++|++++.. ++.||||.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161 (261)
T ss_dssp HHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 99999999999998864 45699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccc
Q 013471 319 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKV 382 (442)
Q Consensus 319 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 382 (442)
. +..|+||||+|+..|+.+++++|+++|++.. ..+..+.+|+|.+...+
T Consensus 162 ~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 162 Q-GKGQDSPLHAVARTASEELACLLMDFGADTQ--------------AKNAEGKRPVELVPPES 210 (261)
T ss_dssp C-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT--------------CCCTTSCCGGGGSCTTC
T ss_pred C-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC--------------CcCCCCCChhhhccccc
Confidence 5 8899999999999999999999999999643 33455667888877543
No 2
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6.8e-39 Score=300.00 Aligned_cols=213 Identities=23% Similarity=0.240 Sum_probs=185.7
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471 155 GKHEAELALRVNSAAYHGDLYQLKGLIRAGAD---PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 231 (442)
Q Consensus 155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 231 (442)
+..+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45667799999999999999999999999988 788999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCC-----------------------------------------------CCc--CCCChHH
Q 013471 232 LEAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFL 262 (442)
Q Consensus 232 ~~A~~~~~~~iv~~Ll~~g~~-----------------------------------------------~~~--~~~~~~L 262 (442)
|+|+..|+.+++++|+++|++ ++. ..+.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 999999999999999998765 222 3466999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 013471 263 CTAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 341 (442)
Q Consensus 263 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~ 341 (442)
|+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 9999999999999999999999999854 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcc
Q 013471 342 LLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK 381 (442)
Q Consensus 342 ~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 381 (442)
+|+++|++... .+..+.+|++.+...
T Consensus 243 ~Ll~~ga~~~~--------------~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 243 LLRAHGAPEPE--------------DGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHTTCCCCC--------------CC-------------
T ss_pred HHHHcCCCcCc--------------CCCcccccccccCCc
Confidence 99999996443 344556666665543
No 3
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2e-38 Score=289.44 Aligned_cols=217 Identities=24% Similarity=0.264 Sum_probs=202.2
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
.++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 34566777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcC-CCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471 233 EAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309 (442)
Q Consensus 233 ~A~~~~~~~iv~~Ll~~g-~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~ 309 (442)
+|+..|+.+++++|++.| .+++..+ +.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999998 6776644 5699999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 310 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.. ..+..+.+|+|.+...++
T Consensus 163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT--------------LKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--------------CCCTTSCCHHHHSCTTCH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC--------------ccCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999998543 334567789999888877
No 4
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=297.02 Aligned_cols=212 Identities=25% Similarity=0.251 Sum_probs=198.0
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 233 (442)
Q Consensus 154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 233 (442)
++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471 234 AIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312 (442)
Q Consensus 234 A~~~~~~~iv~~Ll~~g~~~~~~-~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~ 312 (442)
|+..|+.+++++|++.|++++.. ++.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998764 46799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCc
Q 013471 313 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE 380 (442)
Q Consensus 313 ~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 380 (442)
+|++++. +..|+||||+|+..|+.+++++|+++|++.. ..+..+.+|+|.+..
T Consensus 212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~--------------~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ--------------AKNAEGKRPVELVPP 264 (285)
T ss_dssp TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CCCTTSCCGGGGSCT
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------CcCCCCCCHHHHhcC
Confidence 9999995 8899999999999999999999999998533 344566778888874
No 5
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.7e-38 Score=288.19 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=197.0
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471 155 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230 (442)
Q Consensus 155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 230 (442)
+..+..|.||||+|+..|+.+++++|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3556778999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCC----CCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHhCh
Q 013471 231 LLEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGL 303 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~g~----~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A~~~g~ 303 (442)
||+|+..|+.+++++|++.+. +++.. .+.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 55554 46699999999999999999999999999998 889999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 304 ~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.. ..+..+.+|+|.|...++
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------~~~~~g~tpl~~A~~~~~ 228 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS--------------LKNCHNDTPLMVARSRRV 228 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--------------CCCTTSCCTTTTCSSHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--------------CcCCCCCCHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998643 334567789999988776
No 6
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-37 Score=280.15 Aligned_cols=196 Identities=28% Similarity=0.333 Sum_probs=188.3
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH
Q 013471 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI 235 (442)
Q Consensus 157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~ 235 (442)
.+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++ +++.++..|.||||+|+
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC
Q 013471 236 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA 313 (442)
Q Consensus 236 ~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 313 (442)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999998765 56999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 314 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 314 ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
|++++.+|..|+||+++|+..++.+++++|+++|+...+
T Consensus 181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 999999999999999999999999999999999997554
No 7
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.6e-39 Score=294.96 Aligned_cols=190 Identities=29% Similarity=0.338 Sum_probs=109.3
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHH
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIK 236 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~ 236 (442)
+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+ +++.++..|.||||+|+.
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555555555554 555555555555555555
Q ss_pred cCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471 237 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g 314 (442)
.|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 213 (253)
T 1yyh_A 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213 (253)
T ss_dssp HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 555555555555555555433 345555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471 315 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347 (442)
Q Consensus 315 a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~ 347 (442)
++++.+|..|+||+++|+.+|+.+++++|....
T Consensus 214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred CCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 555555555555555555555555555555433
No 8
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=7.6e-38 Score=284.77 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=181.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHHH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----NIKDKFGNTPLLEA 234 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----~~~~~~g~tpL~~A 234 (442)
|.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 67999999999999999999998 9999999999999999999999999999999999987 67788999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcC---------------CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 013471 235 IKCGHDGVTSLLVKEGASLNVD---------------DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAA 299 (442)
Q Consensus 235 ~~~~~~~iv~~Ll~~g~~~~~~---------------~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~ 299 (442)
+..|+.+++++|+++|++++.. .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162 (232)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999875 4679999999999999999999999999999999999999999
Q ss_pred HhChHHHH----HHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 300 SEGLYLMA----KLLLEAGASV------FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 300 ~~g~~~iv----~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+....
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchh
Confidence 99999988 9999999998 58999999999999999999999999999986543
No 9
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-37 Score=283.32 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=185.1
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 233 (442)
Q Consensus 154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 233 (442)
.+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 112 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471 234 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311 (442)
Q Consensus 234 A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll 311 (442)
|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus 113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 192 (231)
T 3aji_A 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999988755 569999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 312 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 312 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
++|++++.+|..|+||+++|+..++.+++++|.++|++
T Consensus 193 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 193 TQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 99999999999999999999999999999999998875
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.9e-38 Score=304.37 Aligned_cols=243 Identities=21% Similarity=0.180 Sum_probs=186.3
Q ss_pred cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC---------
Q 013471 152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI--------- 222 (442)
Q Consensus 152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--------- 222 (442)
...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 33445566677777777777777777777777777777777777777777777777777777777765554
Q ss_pred -------------------------------------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC
Q 013471 223 -------------------------------------------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD 257 (442)
Q Consensus 223 -------------------------------------------~~~~g~tpL~~A~~~~--~~~iv~~Ll~~g~~~~~~~ 257 (442)
++..|.||||+|+..| +.+++++|+++|++++..+
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence 6667889999999999 8999999999999888765
Q ss_pred --CChHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q 013471 258 --AGSFLCTAVARGDSDFLKRVLSNGVD-----PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 330 (442)
Q Consensus 258 --~~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~ 330 (442)
+.||||+|+..|+.+++++|+++|++ ++.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~ 250 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL 250 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 56899999999999999999998888 89999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471 331 GRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD 405 (442)
Q Consensus 331 A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~ 405 (442)
|+..|+.+++++|+++|+......... .......+...+.++++.++..++ .+.+..|+..+.+
T Consensus 251 A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aa~~~~---------~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQKTDVFLIQACPY--HNGTTVLPDRVVWLDFVPAAADPS---------KQEVLQLLQEKLD 314 (364)
T ss_dssp HHHTCCHHHHHHHHHHSCHHHHHTCTT--BSSSSBCGGGCCCCTTSCSSCCHH---------HHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHcCCchhhhcCcc--cCcccccccccccccchhhhhccC---------HHHHHHHHHHHHH
Confidence 999999999999999987643221110 011222345666778888887776 4445555554433
No 11
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.6e-37 Score=295.85 Aligned_cols=210 Identities=27% Similarity=0.315 Sum_probs=194.7
Q ss_pred HHhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013471 143 LKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 222 (442)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 222 (442)
+..+........+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus 40 v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~ 119 (351)
T 3utm_A 40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119 (351)
T ss_dssp HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 33444445566677788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC----------------------------------------------
Q 013471 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---------------------------------------------- 256 (442)
Q Consensus 223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~---------------------------------------------- 256 (442)
++..|.||||+|+..|+.+++++|+++|++++..
T Consensus 120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (351)
T 3utm_A 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999987642
Q ss_pred ----------CCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCC
Q 013471 257 ----------DAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW 323 (442)
Q Consensus 257 ----------~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~ 323 (442)
.+.||||.|+.. ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus 200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~ 279 (351)
T 3utm_A 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL 279 (351)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 345899999999 5689999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 324 GNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 324 g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
|+||||+|+..|+.+++++|+++|+++..
T Consensus 280 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~ 308 (351)
T 3utm_A 280 GQTALHRAALAGHLQTCRLLLSYGSDPSI 308 (351)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999996543
No 12
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=290.66 Aligned_cols=214 Identities=22% Similarity=0.251 Sum_probs=168.1
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 013471 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGAD--------PNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKF 226 (442)
Q Consensus 156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~~~~ 226 (442)
..+..+.++|+.|+..|+.++|++|++.|++ ++..+..|.||||+|+..+.. .++++|+++|++++.+|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 3455678999999999999999999998875 356678899999999988875 5899999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChH
Q 013471 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 304 (442)
Q Consensus 227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~ 304 (442)
|.||||+|+..|+.+++++|++.|++++..+ +.||++.|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999988754 56999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 305 ~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++... .+..+.+|+|.|...++
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~--------------~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV--------------LNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC--------------CCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999986432 34556789999876554
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.8e-37 Score=283.59 Aligned_cols=192 Identities=26% Similarity=0.287 Sum_probs=159.5
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 013471 167 SAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL 245 (442)
Q Consensus 167 ~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~ 245 (442)
.+...++.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 29 ~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 108 (253)
T 1yyh_A 29 SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108 (253)
T ss_dssp -----------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred hhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 47788999999999999999865 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-CCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471 246 LVKEGA-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322 (442)
Q Consensus 246 Ll~~g~-~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~ 322 (442)
|++.+. +++.. .+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 109 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 188 (253)
T 1yyh_A 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188 (253)
T ss_dssp HHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 999987 66664 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccc
Q 013471 323 WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCS 358 (442)
Q Consensus 323 ~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~ 358 (442)
.|+||||+|+..|+.+++++|+++|++.........
T Consensus 189 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 224 (253)
T 1yyh_A 189 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224 (253)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCC
Confidence 999999999999999999999999998766554443
No 14
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-37 Score=287.52 Aligned_cols=225 Identities=25% Similarity=0.251 Sum_probs=204.4
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 237 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 237 (442)
+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCcC------------CCChHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHhCh-
Q 013471 238 GHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTPLHVAASEGL- 303 (442)
Q Consensus 238 ~~~~iv~~Ll~~g~~~~~~------------~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~A~~~g~- 303 (442)
|+.+++++|+++|++++.. .+.||||.|+..|+.+++++|+++ |++++.++..|+||||+|+..++
T Consensus 116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 195 (285)
T 1wdy_A 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence 9999999999999998854 356999999999999999999998 99999999999999999999998
Q ss_pred ---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccccccchhhcccCCCcceecCCCCCC
Q 013471 304 ---YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWD 379 (442)
Q Consensus 304 ---~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 379 (442)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++.. ..+..+.+|+|.+.
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~--------------~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--------------DTDSDGKTALLLAV 261 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT--------------CCCTTSCCHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc--------------ccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999 676432 33455667888887
Q ss_pred ccccccCceEEEccCcHHHHHHHHhh
Q 013471 380 EKVHRRHGIVLWVPHNIEELIKLAVD 405 (442)
Q Consensus 380 ~~~~~~~~~~~~lp~~~~~ll~~~~~ 405 (442)
..++ .+.++-|++.|++
T Consensus 262 ~~~~---------~~i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 262 ELKL---------KKIAELLCKRGAS 278 (285)
T ss_dssp HTTC---------HHHHHHHHHHSSC
T ss_pred HcCc---------HHHHHHHHHcCCC
Confidence 7777 6677777776654
No 15
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8e-37 Score=277.68 Aligned_cols=209 Identities=30% Similarity=0.352 Sum_probs=193.3
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 239 (442)
+.+|||.|+..|+.+.+++|++.+.. ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence 46799999999999999999988754 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471 240 DGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317 (442)
Q Consensus 240 ~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~ 317 (442)
.+++++|+++|++++..+ +.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 165 (231)
T 3aji_A 86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165 (231)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence 999999999999998755 569999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 318 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
+.+|..|+||||+|+..|+.+++++|+++|++.. ..+..+.+|+|.+...++
T Consensus 166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------------~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY--------------IENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCTTSCCHHHHSCHHHH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--------------CCCCCCCCHHHHHHhhHH
Confidence 9999999999999999999999999999998643 234556678888766555
No 16
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.8e-36 Score=274.64 Aligned_cols=207 Identities=25% Similarity=0.243 Sum_probs=186.9
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK 236 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~-~~~~g~tpL~~A~~ 236 (442)
|.||||.|+..|+.+++++|++.|+++. .++..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 5789999999999999999999998865 48999999999999999999999999999 55555 78999999999999
Q ss_pred cCCHHHHHHHHHcC--CCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471 237 CGHDGVTSLLVKEG--ASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g--~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~ 312 (442)
.|+.+++++|+++| ++++..+ +.||||.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 7766644 5699999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccccccccchhhcccCCCcceecCCCCCCcc
Q 013471 313 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEK 381 (442)
Q Consensus 313 ~g-a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 381 (442)
+| ++++.+|..|+||||+|+..|+.+++++|+ ++|++... .+..+.+|+|.+...
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~--------------~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--------------VDNKGAKAEDVALNE 218 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--------------BCTTSCBGGGGCSST
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc--------------cCCCCCcHHHHHHHH
Confidence 99 999999999999999999999999999999 88986443 234456677777543
No 17
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4e-37 Score=281.33 Aligned_cols=200 Identities=21% Similarity=0.251 Sum_probs=185.1
Q ss_pred cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC----CCCCCCC
Q 013471 150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV----DINIKDK 225 (442)
Q Consensus 150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~~~ 225 (442)
....++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++++ +++..+.
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 114 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc
Confidence 345566777889999999999999999999999999999999999999999999999999999999988 8899999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhC
Q 013471 226 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEG 302 (442)
Q Consensus 226 ~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~---~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g 302 (442)
.|.||||+|+..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|
T Consensus 115 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 194 (241)
T 1k1a_A 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194 (241)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 99999999999999999999999999998755 679999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 303 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 303 ~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
+.+++++|+++|++++.+|..|+||+|+|+..|+.++++.|.+++++
T Consensus 195 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS 241 (241)
T 1k1a_A 195 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241 (241)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred CHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence 99999999999999999999999999999999999999999998764
No 18
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.4e-36 Score=266.76 Aligned_cols=188 Identities=26% Similarity=0.334 Sum_probs=178.4
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471 160 ELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238 (442)
Q Consensus 160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~ 238 (442)
.+.||||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 35789999999999999999999876 99999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH-HcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHhCh-----HHHHHH
Q 013471 239 HDGVTSLLV-KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGL-----YLMAKL 309 (442)
Q Consensus 239 ~~~iv~~Ll-~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~A~~~g~-----~~iv~~ 309 (442)
+.+++++|+ ..+.+++..+ +.||||.|+..|+.+++++|+++| ++++.++..|+||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999 5566777654 569999999999999999999999 9999999999999999999887 999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471 310 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347 (442)
Q Consensus 310 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~ 347 (442)
|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999876
No 19
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.7e-37 Score=289.46 Aligned_cols=198 Identities=21% Similarity=0.144 Sum_probs=185.3
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
.++..+..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 356778889999999999999999999999999999884 999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCC---ChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471 233 EAIKCGHDGVTSLLVKEGASLNVDDA---GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309 (442)
Q Consensus 233 ~A~~~~~~~iv~~Ll~~g~~~~~~~~---~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~ 309 (442)
+|+..|+.+++++|+++|++++..+. .||||+|+..|+.+++++|+++|++.... ..|+||||+|+..|+.+++++
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHH
Confidence 99999999999999999999987654 68999999999999999999999877333 289999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471 310 LLEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAECTQLSE 353 (442)
Q Consensus 310 Ll~~ga~~~~~~~~g~tp-l~~A~~~~~~~~v~~Ll~~~a~~~~~ 353 (442)
|+++|++++.+|..|+|| ||+|+..|+.+++++|+++|++....
T Consensus 180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred HHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 999999999999999998 99999999999999999999976544
No 20
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.7e-38 Score=285.31 Aligned_cols=196 Identities=22% Similarity=0.207 Sum_probs=180.1
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGA----DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 231 (442)
Q Consensus 156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 231 (442)
..+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 345678899999999999999999998765 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCC------Cc--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhC
Q 013471 232 LEAIKCGHDGVTSLLVKEGASL------NV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEG 302 (442)
Q Consensus 232 ~~A~~~~~~~iv~~Ll~~g~~~------~~--~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g 302 (442)
|+|+..|+.+++++|++.|++. +. ..+.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999998753 22 3467999999999999999999999999999997 9999999999999
Q ss_pred hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471 303 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351 (442)
Q Consensus 303 ~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~ 351 (442)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 9999999999999999999999999999999999999999999999755
No 21
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.7e-37 Score=283.94 Aligned_cols=192 Identities=21% Similarity=0.135 Sum_probs=179.1
Q ss_pred hhHHHHHHHhcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCC------
Q 013471 161 LALRVNSAAYHGDLY----QLKGLIRAGADPNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------ 223 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~------ 223 (442)
|.||||.|+..|+.+ ++++|++.|++++. +|..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 679999999999997 66777789999998 899999999999999 9999999999999887633
Q ss_pred -----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---------------CChHHHHHHHcCCHHHHHHHHH---C
Q 013471 224 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCTAVARGDSDFLKRVLS---N 280 (442)
Q Consensus 224 -----~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~---------------~~~~L~~A~~~g~~~~v~~Ll~---~ 280 (442)
|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 4789999999999999999999999999998865 6799999999999999999999 9
Q ss_pred CCCCCCCCCCCCcHHHHHHH--hChHH-------HHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 013471 281 GVDPSSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE 344 (442)
Q Consensus 281 g~~~~~~~~~g~t~Lh~A~~--~g~~~-------iv~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~v~~Ll 344 (442)
|++++.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999 78888 999999999999 899999999999999999999999999
Q ss_pred HcCCCccc
Q 013471 345 DAECTQLS 352 (442)
Q Consensus 345 ~~~a~~~~ 352 (442)
++|+....
T Consensus 242 ~~g~~~~~ 249 (256)
T 2etb_A 242 QREFSGAA 249 (256)
T ss_dssp HHHHHHHH
T ss_pred hCCCCCCC
Confidence 99986543
No 22
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=280.42 Aligned_cols=231 Identities=22% Similarity=0.287 Sum_probs=197.3
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 230 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.. ..|.||
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~ 104 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASP 104 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCCH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCH
Confidence 4556777888999999999999999999999999999999999999999999999999999999999999864 569999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 013471 231 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 308 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~ 308 (442)
||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++. +..|+||||+|+..|+.++++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~ 183 (261)
T 2xai_A 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELAC 183 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHH
Confidence 999999999999999999999998754 56999999999999999999999999995 889999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCce
Q 013471 309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGI 388 (442)
Q Consensus 309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 388 (442)
+|+++|++++.+|..|+||+|+|+.++ +++++|+++++..... ..+ +....+..+.+++|.+.....
T Consensus 184 ~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~-~~~-----~~~~r~~~g~t~l~~~~~~~~----- 250 (261)
T 2xai_A 184 LLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLM-QLC-----RLRIRKCFGIQQHHKITKLVL----- 250 (261)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHH-HHH-----HHHHHTTSCTTCGGGGGGSSS-----
T ss_pred HHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHH-HHH-----HHHHHHHhchhccccCcccCC-----
Confidence 999999999999999999999999655 5899999987643221 111 122223445566776554333
Q ss_pred EEEccCcHHHHH
Q 013471 389 VLWVPHNIEELI 400 (442)
Q Consensus 389 ~~~lp~~~~~ll 400 (442)
|..++..+
T Consensus 251 ----p~~l~~~l 258 (261)
T 2xai_A 251 ----PEDLKQFL 258 (261)
T ss_dssp ----CHHHHHHH
T ss_pred ----cHHHHHHH
Confidence 66666654
No 23
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-36 Score=300.33 Aligned_cols=200 Identities=29% Similarity=0.367 Sum_probs=142.1
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
.++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence 34555666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471 233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310 (442)
Q Consensus 233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L 310 (442)
+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++++++.+..+..|.||||+|+..|+.+++++|
T Consensus 86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 7777777777777777777766543 45777777777777777777777777777777777777777777777777777
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 311 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 311 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
+++|++++..+..|.||||+|+..|+.+++++|+++|++...
T Consensus 166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 207 (437)
T 1n11_A 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207 (437)
T ss_dssp HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC
T ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence 777777777777777777777777777777777777765443
No 24
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.3e-35 Score=256.27 Aligned_cols=156 Identities=46% Similarity=0.645 Sum_probs=131.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 013471 163 LRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 242 (442)
Q Consensus 163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~i 242 (442)
++|+.||..|+.++|++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCC
Q 013471 243 TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 322 (442)
Q Consensus 243 v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~ 322 (442)
+++|+++|+ +++.+|.+|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 86 v~~Ll~~ga-------------------------------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 134 (169)
T 4gpm_A 86 VKLLISKGA-------------------------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134 (169)
T ss_dssp HHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHHHHCcC-------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence 766666554 5556677788888888888888888888888888888888
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 323 WGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 323 ~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
.|+||||+|+..|+.+++++|+++||+
T Consensus 135 ~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 135 DGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 888888888888888888888888875
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.7e-36 Score=282.41 Aligned_cols=210 Identities=29% Similarity=0.365 Sum_probs=189.9
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 237 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 237 (442)
+..+.|+||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 116 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHC-CCC--------------------------CCCCC
Q 013471 238 GHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN-GVD--------------------------PSSRD 288 (442)
Q Consensus 238 ~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~-g~~--------------------------~~~~~ 288 (442)
|+.+++++|+++|++++..+ +.||||+|+..++.+++++++.. |.+ ....+
T Consensus 117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (299)
T 1s70_B 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence 99999999999999988754 56999999999999999887753 333 23466
Q ss_pred CCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCC
Q 013471 289 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPR 368 (442)
Q Consensus 289 ~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~ 368 (442)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.. ..+
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--------------~~d 262 (299)
T 1s70_B 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--------------AVN 262 (299)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------CCC
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--------------CcC
Confidence 789999999999999999999999999999999999999999999999999999999998533 334
Q ss_pred cceecCCCCCCcc
Q 013471 369 KCTVFPFHPWDEK 381 (442)
Q Consensus 369 ~~~~~~~h~~~~~ 381 (442)
..+.+|+|.+...
T Consensus 263 ~~g~t~l~~A~~~ 275 (299)
T 1s70_B 263 KVGQTAFDVADED 275 (299)
T ss_dssp TTSCCTTTSCCSG
T ss_pred CCCCCHHHHHHHH
Confidence 5667899988543
No 26
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-35 Score=274.10 Aligned_cols=203 Identities=26% Similarity=0.280 Sum_probs=191.5
Q ss_pred cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC------
Q 013471 150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK------ 223 (442)
Q Consensus 150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~------ 223 (442)
.....+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..
T Consensus 61 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140 (285)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH
Confidence 34556667778999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ----CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCC--CChHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCC
Q 013471 224 ----DKFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCTAVARGD----SDFLKRVLSNGVDPSSRDYDHR 292 (442)
Q Consensus 224 ----~~~g~tpL~~A~~~~~~~iv~~Ll~~-g~~~~~~~--~~~~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~ 292 (442)
+..|.||||+|+..|+.+++++|++. |++++..+ +.||||.|+..++ .+++++|+++|++++.++..|+
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~ 220 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence 78899999999999999999999998 99988754 5699999999999 9999999999999999999999
Q ss_pred cHHHHHHHhChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 293 TPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 293 t~Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 221 t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred cHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 99999999999999999999 8999999999999999999999999999999999997654
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=284.64 Aligned_cols=196 Identities=23% Similarity=0.319 Sum_probs=153.2
Q ss_pred cccchhhhhHHHHHHHhcCCHH-HHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 154 IGKHEAELALRVNSAAYHGDLY-QLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 154 ~~~~~~~~~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
++..+..+.|||+.|+..++.+ ++++|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.++..|.||+|
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~ 124 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLH 124 (269)
T ss_dssp ------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccc
Confidence 3455667889999999988764 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471 233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310 (442)
Q Consensus 233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L 310 (442)
.|+..++.+++++|++.|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|
T Consensus 125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L 204 (269)
T 4b93_B 125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204 (269)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred cccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999998865 56999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCC
Q 013471 311 LEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAECT 349 (442)
Q Consensus 311 l~~ga~~~~~~~~g~tpl~~A~~~~~-~~~v~~Ll~~~a~ 349 (442)
+++|+|++.+|..|+||||+|+++++ .+++++|.+.++.
T Consensus 205 l~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 205 LLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp HHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred HHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 99999999999999999999998876 3555555555543
No 28
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.7e-36 Score=291.38 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=188.9
Q ss_pred ccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCC
Q 013471 149 DITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG---VDINIKDK 225 (442)
Q Consensus 149 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~~~~~~ 225 (442)
+....++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++| ++++..+.
T Consensus 154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 344566777888999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCcHHHHHHHcC---CHHHHHHHHHcCCCCCcC----------CCChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCC
Q 013471 226 FGNTPLLEAIKCG---HDGVTSLLVKEGASLNVD----------DAGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDH 291 (442)
Q Consensus 226 ~g~tpL~~A~~~~---~~~iv~~Ll~~g~~~~~~----------~~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g 291 (442)
.|.||||+|+..+ +.+++++|+++|++++.. .+.||||+|+..|+.+++++|++++ ++++.+|..|
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g 313 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence 9999999999998 899999999999998752 4679999999999999999999875 9999999999
Q ss_pred CcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 292 ~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++++++
T Consensus 314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999875
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=269.54 Aligned_cols=227 Identities=23% Similarity=0.231 Sum_probs=171.9
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 013471 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEA 234 (442)
Q Consensus 156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A 234 (442)
..+..+.|+|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 445566778888888888888888888888888888888888888888888888888888888777544 4478888888
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh-HHHHHHHH
Q 013471 235 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL-YLMAKLLL 311 (442)
Q Consensus 235 ~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~-~~iv~~Ll 311 (442)
+..|+.+++++|++.|++++..+ +.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|+
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~ 163 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence 88888888888888888777643 4578888888888888888888888888888888888888886665 77888888
Q ss_pred HCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEE
Q 013471 312 EAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVL 390 (442)
Q Consensus 312 ~~ga~~~~~~~-~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 390 (442)
++|++++..+. .|.||||+|+..|+.+++++|+++|++.... +..+.+|+|.+...++
T Consensus 164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------------~~~g~t~l~~A~~~~~------- 222 (240)
T 3eu9_A 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ--------------NIKGESALDLAKQRKN------- 222 (240)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB--------------CTTSCBHHHHHHHTTC-------
T ss_pred hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc--------------CCCCCCHHHHHHHcCc-------
Confidence 88888888776 7888888888888888888888887754322 2334556777666666
Q ss_pred EccCcHHHHHHHHhh
Q 013471 391 WVPHNIEELIKLAVD 405 (442)
Q Consensus 391 ~lp~~~~~ll~~~~~ 405 (442)
.+.++.|++.+++
T Consensus 223 --~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 223 --VWMINHLQEARQA 235 (240)
T ss_dssp --HHHHHHHHHHC--
T ss_pred --HHHHHHHHHhhhc
Confidence 5556666655443
No 30
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.5e-37 Score=297.79 Aligned_cols=227 Identities=18% Similarity=0.178 Sum_probs=200.7
Q ss_pred cccch-hhhhHHHHHHHhcCCHHHHHHHH--------HcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 013471 154 IGKHE-AELALRVNSAAYHGDLYQLKGLI--------RAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 224 (442)
Q Consensus 154 ~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 224 (442)
++..+ ..|.||||+|+..|+.+++++|+ +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.++
T Consensus 117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~ 196 (373)
T 2fo1_E 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196 (373)
T ss_dssp TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence 34444 57899999999999998888776 7899999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCcC--CCChHHHHHHHcC---CHHHHHHHHHCCCCCCC--------CC
Q 013471 225 KFGNTPLLEAIKCGHDGVTSLLVKEG---ASLNVD--DAGSFLCTAVARG---DSDFLKRVLSNGVDPSS--------RD 288 (442)
Q Consensus 225 ~~g~tpL~~A~~~~~~~iv~~Ll~~g---~~~~~~--~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~ 288 (442)
..|.||||+|+..|+.+++++|++++ ++++.. .+.||||+|+..+ +.+++++|+++|++++. .+
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d 276 (373)
T 2fo1_E 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276 (373)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence 99999999999999999999999987 677664 4679999999998 89999999999999986 67
Q ss_pred CCCCcHHHHHHHhChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCC
Q 013471 289 YDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHP 367 (442)
Q Consensus 289 ~~g~t~Lh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~ 367 (442)
..|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++... .
T Consensus 277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~--------------~ 342 (373)
T 2fo1_E 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--------------V 342 (373)
T ss_dssp CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--------------C
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC--------------C
Confidence 79999999999999999999999876 99999999999999999999999999999999986433 3
Q ss_pred CcceecCCCCCCccccccCceEEEccCcHHHHHHHH
Q 013471 368 RKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLA 403 (442)
Q Consensus 368 ~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~ 403 (442)
+..+.+|+|.|...++ .+.++-|++.+
T Consensus 343 d~~g~t~l~~A~~~g~---------~~iv~~Ll~~~ 369 (373)
T 2fo1_E 343 DATDHTARQLAQANNH---------HNIVDIFDRCR 369 (373)
T ss_dssp CSSSCCHHHHHHHTTC---------HHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHhcC
Confidence 3456678888877777 45555555443
No 31
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-35 Score=294.44 Aligned_cols=216 Identities=24% Similarity=0.294 Sum_probs=132.6
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013471 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 233 (442)
Q Consensus 154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 233 (442)
.+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 251 (437)
T 1n11_A 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251 (437)
T ss_dssp TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34444445556666666666666666666555555555556666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471 234 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311 (442)
Q Consensus 234 A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll 311 (442)
|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|+
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 666666666666666666555433 346666666666666666666666666666666666666666666666666666
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 312 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 312 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
++|++++.+|..|+||||+|+..|+.+++++|+++|+++. ..+..+.+|+|.+...++
T Consensus 332 ~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~--------------~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--------------EVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------------CCCSSSCCHHHHHHHTTC
T ss_pred hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC--------------CCCCCCCCHHHHHHHcCc
Confidence 6666666666666666666666666666666666666422 223455566666655544
No 32
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.6e-35 Score=266.56 Aligned_cols=195 Identities=27% Similarity=0.368 Sum_probs=184.1
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCc
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNT 229 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t 229 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++| ++++..+..|.|
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 113 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCC
Confidence 4556667778999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471 230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA 307 (442)
Q Consensus 230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv 307 (442)
|||+|+..|+.+++++|+++|++++..+ +.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 193 (237)
T 3b7b_A 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH
Confidence 9999999999999999999999988754 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471 308 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345 (442)
Q Consensus 308 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~ 345 (442)
++|+++|++++.+|..|+||+|+|+.+|+.+.+..|++
T Consensus 194 ~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876666554
No 33
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.7e-35 Score=284.02 Aligned_cols=229 Identities=27% Similarity=0.301 Sum_probs=205.2
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
....+..+.++||.|+..|+.+.++.|+.. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 344556788999999999999999999876 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------------
Q 013471 233 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD---------------------- 288 (442)
Q Consensus 233 ~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------------------- 288 (442)
+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++..+
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 9999999999999999999998865 5699999999999999999999999987654
Q ss_pred --------------------------------CCCCcHHHHHHHh---ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q 013471 289 --------------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 333 (442)
Q Consensus 289 --------------------------------~~g~t~Lh~A~~~---g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~ 333 (442)
..|+||||+|+.. +..+++++|+++|++++.+|..|+||||+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 256 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence 5577999999998 67899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471 334 CGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD 405 (442)
Q Consensus 334 ~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~ 405 (442)
.|+.+++++|+++|++... .+..+.+|+|.|...++ .+.++.|++.|++
T Consensus 257 ~g~~~~v~~Ll~~ga~~n~--------------~d~~g~t~L~~A~~~~~---------~~~v~~Ll~~gad 305 (351)
T 3utm_A 257 RAHNDVMEVLHKHGAKMNA--------------LDSLGQTALHRAALAGH---------LQTCRLLLSYGSD 305 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTC--------------CCTTSCCHHHHHHHHTC---------HHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHCCCCCCC--------------cCCCCCCHHHHHHHcCc---------HHHHHHHHHcCCC
Confidence 9999999999999986432 34556778888888777 6677888876654
No 34
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.4e-36 Score=280.19 Aligned_cols=195 Identities=22% Similarity=0.190 Sum_probs=175.6
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCC---
Q 013471 155 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI--- 220 (442)
Q Consensus 155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~--- 220 (442)
+..+..|.||||.|+..|+.++++.|++ .+++++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 3456678999999999999999998887 466665 4588999999999987 9999999999998753
Q ss_pred ----C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CChHHHHHHHcCCHHHHHH
Q 013471 221 ----N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKR 276 (442)
Q Consensus 221 ----~----~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~----------------~~~~L~~A~~~g~~~~v~~ 276 (442)
+ ..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 2 256789999999999999999999999999998864 6799999999999999999
Q ss_pred HHH---CCCCCCCCCCCCCcHHHHHHHhCh---------HHHHHHHHHCCCCCC-------CCCCCCCCHHHHHHHcCCH
Q 013471 277 VLS---NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNK 337 (442)
Q Consensus 277 Ll~---~g~~~~~~~~~g~t~Lh~A~~~g~---------~~iv~~Ll~~ga~~~-------~~~~~g~tpl~~A~~~~~~ 337 (442)
|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+.
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence 999 999999999999999999999998 899999999999997 4899999999999999999
Q ss_pred HHHHHHHHcCCC
Q 013471 338 NLIKLLEDAECT 349 (442)
Q Consensus 338 ~~v~~Ll~~~a~ 349 (442)
+++++|+++|+.
T Consensus 247 ~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 247 GVLAYILQREIH 258 (273)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHCCCC
Confidence 999999999994
No 35
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.5e-35 Score=282.58 Aligned_cols=188 Identities=28% Similarity=0.331 Sum_probs=127.7
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCC---------------
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDIN--------------- 221 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--------------- 221 (442)
...+.|+||.|+..|++++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 44567788888888888888888888888887764 47888888888888888888888777653
Q ss_pred ------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC------------CCChHHHHHHHcCCH
Q 013471 222 ------------------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGDS 271 (442)
Q Consensus 222 ------------------~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~------------~~~~~L~~A~~~g~~ 271 (442)
..+..|.||||+|+..|+.+++++|+++|++++.. .+.||||+|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 34556777888888888888888888877776542 245778888887777
Q ss_pred HHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhCh----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471 272 DFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGL----YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345 (442)
Q Consensus 272 ~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~ 345 (442)
+++++|++ .|++++.++..|.|+||.++..+. .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 77777774 466666666555555555544322 335555555555555555555555555555555555555554
No 36
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=275.41 Aligned_cols=195 Identities=23% Similarity=0.306 Sum_probs=180.8
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 230 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+ .|.||
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~ 160 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASP 160 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCH
T ss_pred CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCH
Confidence 45567778889999999999999999999999999999999999999999999999999999999999998654 49999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 013471 231 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 308 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~ 308 (442)
||+|+..|+.+++++|++.|++++..+ +.||||+|+..|+.+++++|+++|++++. +..|+||||+|+..|+.++++
T Consensus 161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999988754 56999999999999999999999999995 889999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Q 013471 309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-ECT 349 (442)
Q Consensus 309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~-~a~ 349 (442)
+|+++|++++.+|..|+||||+|+ ++.+++++|+++ |++
T Consensus 240 ~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 240 LLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS 279 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred HHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence 999999999999999999999999 567999999998 554
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-35 Score=267.60 Aligned_cols=211 Identities=24% Similarity=0.277 Sum_probs=187.6
Q ss_pred CCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013471 172 GDLYQLKGLIRAGADPNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 250 (442)
Q Consensus 172 g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g 250 (442)
|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6788999999999998765 899999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCH
Q 013471 251 A-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 327 (442)
Q Consensus 251 ~-~~~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tp 327 (442)
. +++.. .+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 7 56554 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471 328 LDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD 405 (442)
Q Consensus 328 l~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~ 405 (442)
||+|+..|+.+++++|+++|++... .+..+.+|+|.+...++ .+.++-|++.+..
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~--------------~~~~g~t~l~~A~~~~~---------~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDI--------------TDHMDRLPRDIAQERMH---------HDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTC--------------CCTTCCCHHHHHHHTTC---------HHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcc--------------ccccCCCHHHHHHHhcc---------hHHHHHHHHcCCC
Confidence 9999999999999999999986432 23445678888777777 5566667665544
No 38
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.3e-35 Score=273.49 Aligned_cols=182 Identities=25% Similarity=0.269 Sum_probs=160.5
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--------------
Q 013471 154 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------------- 219 (442)
Q Consensus 154 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-------------- 219 (442)
++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 117 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence 556677899999999999999999999999999999999999999999999999999999998765
Q ss_pred ---------------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CChHHH
Q 013471 220 ---------------------------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLC 263 (442)
Q Consensus 220 ---------------------------------~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~---~~~~L~ 263 (442)
++.++..|.||||+|+..|+.+++++|+++|++++..+ +.||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~ 197 (282)
T 1oy3_D 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197 (282)
T ss_dssp --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence 67788899999999999999999999999999999865 679999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Q 013471 264 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 335 (442)
Q Consensus 264 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~ 335 (442)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|....
T Consensus 198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765
No 39
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=9.4e-35 Score=279.62 Aligned_cols=227 Identities=22% Similarity=0.238 Sum_probs=193.1
Q ss_pred ccccccchh-hhhHHHHHHHhcCCHHHHHHHHHcCCCCC---------------------------------CCCCCCCh
Q 013471 151 TFHIGKHEA-ELALRVNSAAYHGDLYQLKGLIRAGADPN---------------------------------KTDYDGRS 196 (442)
Q Consensus 151 ~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------~~~~~g~t 196 (442)
...++..+. .|.||||+|+..|+.+++++|+++|++++ .+|..|.|
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t 127 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence 445554443 48999999999999999999999988754 45667899
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCC--CChHHH
Q 013471 197 PLHLATSRGYEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDD--AGSFLC 263 (442)
Q Consensus 197 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~----------~~~g~tpL~~A~~~~~~~iv~~Ll~-~g~~~~~~~--~~~~L~ 263 (442)
|||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++ .|++++..+ +.++++
T Consensus 128 ~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~ 207 (337)
T 4g8k_A 128 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 207 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence 999999999999999999999998754 3568999999999999999999996 599998865 458888
Q ss_pred HHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Q 013471 264 TAVARGD----SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKN 338 (442)
Q Consensus 264 ~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~ 338 (442)
.++..+. ..++++|+++|++++.++..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+
T Consensus 208 ~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~ 287 (337)
T 4g8k_A 208 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 287 (337)
T ss_dssp HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH
Confidence 8776544 4688999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred HHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhh
Q 013471 339 LIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVD 405 (442)
Q Consensus 339 ~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~ 405 (442)
+|++|+++|++.... .|+|.|...++ .+.++-|++.|++
T Consensus 288 iv~~Ll~~GAd~n~~-------------------~~L~~A~~~~~---------~~iv~~Ll~~GA~ 326 (337)
T 4g8k_A 288 IAELLCKRGASTDCG-------------------DLVMTARRNYD---------HSLVKVLLSHGAK 326 (337)
T ss_dssp HHHHHHTTSCSSTTC-------------------CHHHHHHHTTC---------HHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCCC-------------------CHHHHHHHcCC---------HHHHHHHHHCcCC
Confidence 999999999964321 15666666666 5567777776654
No 40
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=261.03 Aligned_cols=201 Identities=25% Similarity=0.288 Sum_probs=185.1
Q ss_pred cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 013471 150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN 228 (442)
Q Consensus 150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~ 228 (442)
....++..+..|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 110 (240)
T 3eu9_A 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC 110 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 335566677789999999999999999999999999987655 4599999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCC-HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHhChH
Q 013471 229 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD-SDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEGLY 304 (442)
Q Consensus 229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~A~~~g~~ 304 (442)
||||+|+..|+.+++++|+++|++++..+ +.||||.|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.
T Consensus 111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 190 (240)
T 3eu9_A 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH
T ss_pred CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH
Confidence 99999999999999999999999988754 5699999997776 8999999999999999997 999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471 305 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 350 (442)
Q Consensus 305 ~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~ 350 (442)
+++++|+++|++++.+|..|+||+++|+..|+.+++++|+++++..
T Consensus 191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999998753
No 41
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.3e-35 Score=274.81 Aligned_cols=193 Identities=20% Similarity=0.152 Sum_probs=174.9
Q ss_pred hhhHHHHHHHhcCCHHHHHHHH----HcCCCCCCCC----CCCChHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 013471 160 ELALRVNSAAYHGDLYQLKGLI----RAGADPNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD--------- 219 (442)
Q Consensus 160 ~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~ga~--------- 219 (442)
.+.++||.|+..|+.+.++.|+ +.|++++..+ ..|.||||+|+ ..|+.+++++|+++|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 3678999999999999655555 4899998665 77999999999 77999999999998754
Q ss_pred --CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CChHHHHHHHcCCHHHHHHHHH--
Q 013471 220 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKRVLS-- 279 (442)
Q Consensus 220 --~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~----------------~~~~L~~A~~~g~~~~v~~Ll~-- 279 (442)
.+..|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 34555689999999999999999999999999999876 7799999999999999999999
Q ss_pred -CCCCCCCCCCCCCcHHHHHHHhCh---------HHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHH
Q 013471 280 -NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL 342 (442)
Q Consensus 280 -~g~~~~~~~~~g~t~Lh~A~~~g~---------~~iv~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~v~~ 342 (442)
+|++++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999998887 79999999999998 6799999999999999999999999
Q ss_pred HHHcCCCccc
Q 013471 343 LEDAECTQLS 352 (442)
Q Consensus 343 Ll~~~a~~~~ 352 (442)
|+++|+....
T Consensus 244 Ll~~g~~~~~ 253 (260)
T 3jxi_A 244 IIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHC
T ss_pred HHHhCCCccc
Confidence 9999986544
No 42
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.9e-34 Score=260.16 Aligned_cols=188 Identities=22% Similarity=0.191 Sum_probs=174.8
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHcC--CCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCc
Q 013471 155 GKHEAELALRVNSAAYHGDLYQLKGLIRAG--ADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKG--VDINIKDKFGNT 229 (442)
Q Consensus 155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~t 229 (442)
+..+..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+..|+.+++++|+++| ++++.++..|.|
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t 109 (228)
T 2dzn_A 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 109 (228)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCC
Confidence 446778899999999999999999999999 55555 7889999999999999999999999998 899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHhChHHH
Q 013471 230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLM 306 (442)
Q Consensus 230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~A~~~g~~~i 306 (442)
|||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++
T Consensus 110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence 9999999999999999999999998765 569999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471 307 AKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345 (442)
Q Consensus 307 v~~Ll-~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~ 345 (442)
+++|+ ++|++++.+|..|+||+++|+.. +++++|++
T Consensus 190 v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 190 AVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp HHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred HHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 99999 89999999999999999999654 56777765
No 43
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-34 Score=271.01 Aligned_cols=195 Identities=27% Similarity=0.349 Sum_probs=175.5
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 230 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 142 (299)
T 1s70_B 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142 (299)
T ss_dssp CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence 35566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHc-CCCCC----------------------------cCCCChHHHHHHHcCCHHHHHHHHHCC
Q 013471 231 LLEAIKCGHDGVTSLLVKE-GASLN----------------------------VDDAGSFLCTAVARGDSDFLKRVLSNG 281 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~-g~~~~----------------------------~~~~~~~L~~A~~~g~~~~v~~Ll~~g 281 (442)
||+|+..++.++++.++.. +.+++ ...+.||||+|+..|+.+++++|+++|
T Consensus 143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 222 (299)
T 1s70_B 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222 (299)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence 9999999999999877753 44332 135679999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471 282 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345 (442)
Q Consensus 282 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~ 345 (442)
++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+......+.+++.+
T Consensus 223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~ 286 (299)
T 1s70_B 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286 (299)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999977554444444443
No 44
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.3e-34 Score=270.40 Aligned_cols=193 Identities=17% Similarity=0.166 Sum_probs=179.4
Q ss_pred cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcH
Q 013471 152 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG-NTP 230 (442)
Q Consensus 152 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g-~tp 230 (442)
..++.. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..| .||
T Consensus 55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~ 132 (285)
T 3kea_A 55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132 (285)
T ss_dssp GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence 344444 37999999999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcC-CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHhChHHHHH
Q 013471 231 LLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTP-LHVAASEGLYLMAK 308 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~g~~~~~~-~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-Lh~A~~~g~~~iv~ 308 (442)
||+|+..|+.+++++|+++|++.... .+.||||+|+..|+.+++++|+++|++++.++..|+|| ||+|+..|+.++++
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~ 212 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 99999999999999999999988555 67799999999999999999999999999999999998 99999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 013471 309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 353 (442)
Q Consensus 309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~ 353 (442)
+|+++|++++.+|. .|+..|+.+++++|+++|++..+.
T Consensus 213 ~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 213 ALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence 99999999999883 567899999999999999865443
No 45
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=263.66 Aligned_cols=189 Identities=21% Similarity=0.251 Sum_probs=178.0
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-
Q 013471 160 ELALRVNSAAYHGDLYQLKGLIRAGAD--PNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI- 235 (442)
Q Consensus 160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~- 235 (442)
...+++|.|+..|+++.++.+++.+.+ +|.+|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 345678999999999999999988766 88999999999999999999999999999998 99999999999999999
Q ss_pred ----HcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471 236 ----KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309 (442)
Q Consensus 236 ----~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~ 309 (442)
..++.+++++|++.|.+.+..+ +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 6688999999999998877654 6799999999999999999999999999999999999999999999999999
Q ss_pred HHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471 310 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 348 (442)
Q Consensus 310 Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a 348 (442)
|++ +|++++.+|..|+||||+|+..|+.+++++|++++.
T Consensus 235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999 899999999999999999999999999999999764
No 46
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=1.1e-31 Score=231.87 Aligned_cols=159 Identities=35% Similarity=0.514 Sum_probs=133.6
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 237 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 237 (442)
...+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 34467889999999999999999999988888888899999999999999999999998888888888888888888777
Q ss_pred CCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCC
Q 013471 238 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 317 (442)
Q Consensus 238 ~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~ 317 (442)
|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 91 ~~~~~~~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 139 (169)
T 2y1l_E 91 GHLEIVEVLLKNG-------------------------------ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139 (169)
T ss_dssp TCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 7766666666554 555667778899999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471 318 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347 (442)
Q Consensus 318 ~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~ 347 (442)
+.+|..|+||+|+|+..|+.+++++|+++|
T Consensus 140 ~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999999999999999999998865
No 47
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=3.7e-32 Score=239.92 Aligned_cols=161 Identities=29% Similarity=0.370 Sum_probs=124.4
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHH
Q 013471 188 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTA 265 (442)
Q Consensus 188 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A 265 (442)
|.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 4455566666666666666666666666666666666666666666666666666666666666655543 34666666
Q ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 013471 266 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 345 (442)
Q Consensus 266 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~ 345 (442)
+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 66777777777777788888899999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 013471 346 AEC 348 (442)
Q Consensus 346 ~~a 348 (442)
+|.
T Consensus 189 ~~~ 191 (192)
T 2rfm_A 189 VRR 191 (192)
T ss_dssp HHH
T ss_pred ccC
Confidence 763
No 48
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.2e-32 Score=246.73 Aligned_cols=200 Identities=22% Similarity=0.218 Sum_probs=176.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----c--CCCChHHHH
Q 013471 193 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-----V--DDAGSFLCT 264 (442)
Q Consensus 193 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~-----~--~~~~~~L~~ 264 (442)
.|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|+++. . ..+.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 489999999999999999999998 99999999999999999999999999999999998762 2 356799999
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 013471 265 AVARGDSDFLKRVLSNGVDPSSRDY-------------DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 331 (442)
Q Consensus 265 A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A 331 (442)
|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998865 799999999999999999999999999999999999999999
Q ss_pred HHcCCHHHH----HHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHhhhc
Q 013471 332 RMCGNKNLI----KLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAVDKL 407 (442)
Q Consensus 332 ~~~~~~~~v----~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~~k~ 407 (442)
+..|+.+++ ++|+++|++..... -....+..+.+|+|.|...++ .+.++.|++.+....
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~--------~~~~~~~~g~tpl~~A~~~g~---------~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKS--------LELVPNNQGLTPFKLAGVEGN---------IVMFQHLMQKRKHIA 224 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCC--------GGGCCCTTSCCHHHHHHHHTC---------HHHHHHHHHHHHHC-
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhh--------hhccCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCccch
Confidence 999999988 99999998643211 012445667889999988888 778889998877654
Q ss_pred CC
Q 013471 408 DF 409 (442)
Q Consensus 408 ~~ 409 (442)
..
T Consensus 225 ~~ 226 (232)
T 2rfa_A 225 AA 226 (232)
T ss_dssp --
T ss_pred hh
Confidence 44
No 49
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=5.7e-32 Score=231.73 Aligned_cols=157 Identities=27% Similarity=0.394 Sum_probs=127.9
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 240 (442)
..||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 4578888888888888888888888888888888888888888 888888888888888888888888887777776666
Q ss_pred HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC-CCC
Q 013471 241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFT 319 (442)
Q Consensus 241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~-~~~ 319 (442)
+++++|+++ |++++.++..|+||||+|+..|+.+++++|+++|++ ++.
T Consensus 84 ~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 132 (162)
T 1ihb_A 84 DTLQTLLEF-------------------------------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132 (162)
T ss_dssp HHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred HHHHHHHHc-------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC
Confidence 666655555 555667777889999999999999999999999887 588
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 320 KDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 320 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
+|..|+||||+|+..|+.+++++|+++||+
T Consensus 133 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 133 RNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 888899999999999999999999998874
No 50
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=5.2e-32 Score=234.49 Aligned_cols=166 Identities=26% Similarity=0.354 Sum_probs=110.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471 162 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240 (442)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 240 (442)
.||||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 4688999999999999999988877 788888899999999999999999999999999888888888888888888887
Q ss_pred HHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471 241 GVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 318 (442)
Q Consensus 241 ~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~ 318 (442)
+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162 (172)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 77777777766655432 2344444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCCCCH
Q 013471 319 TKDRWGNTP 327 (442)
Q Consensus 319 ~~~~~g~tp 327 (442)
.++..|.||
T Consensus 163 ~~~~~~~~p 171 (172)
T 3v30_A 163 QSNLVPADP 171 (172)
T ss_dssp CC-------
T ss_pred cccCCCCCC
Confidence 444444443
No 51
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=1.7e-31 Score=230.05 Aligned_cols=160 Identities=27% Similarity=0.336 Sum_probs=124.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 240 (442)
|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 55677777777777777777777777777777777777777777777777777777777776666666666666665555
Q ss_pred HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCC
Q 013471 241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 320 (442)
Q Consensus 241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~ 320 (442)
+++++|+ ++|++++.++..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 83 ~~v~~Ll-------------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 131 (167)
T 3v31_A 83 DIVKMLL-------------------------------DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131 (167)
T ss_dssp HHHHHHH-------------------------------HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHH-------------------------------HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 5555554 555666778888999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471 321 DRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351 (442)
Q Consensus 321 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~ 351 (442)
|..|+||+|+|+..|+.+++++|++++++..
T Consensus 132 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 132 TDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887544
No 52
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.9e-32 Score=248.64 Aligned_cols=181 Identities=22% Similarity=0.249 Sum_probs=167.5
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCC
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD------INIKDKF 226 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~ 226 (442)
.++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence 4566677899999999999999999999999999999999999999999999999999999999986 4677889
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCcC---CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 013471 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 303 (442)
Q Consensus 227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~---~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~ 303 (442)
|.||||+|+..|+.+++++|+++|++++.. .+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus 117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence 999999999999999999999999999886 45799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCC--CCCCCCCCHHHHHHH
Q 013471 304 YLMAKLLLEAGASVF--TKDRWGNTPLDEGRM 333 (442)
Q Consensus 304 ~~iv~~Ll~~ga~~~--~~~~~g~tpl~~A~~ 333 (442)
.+++++|+++|++.. .++..|.||.+.+..
T Consensus 197 ~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 197 TRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp HHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred hHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 999999999999876 788889998775544
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=3.1e-32 Score=261.02 Aligned_cols=179 Identities=19% Similarity=0.177 Sum_probs=110.5
Q ss_pred cccccccc-chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCCCCC
Q 013471 149 DITFHIGK-HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIK 223 (442)
Q Consensus 149 ~~~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-a~~~~~ 223 (442)
+....++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+ .++++.|++++ ++++.+
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~ 197 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence 34445555 56666667777777677777777766666666666666677777776666 55666666654 556666
Q ss_pred CCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCcCC--CChHHHHHHHcCCHHHHHHH
Q 013471 224 DKFGNTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCTAVARGDSDFLKRV 277 (442)
Q Consensus 224 ~~~g~tpL~~A~~----~~~~~iv~~Ll~~--------------------g~~~~~~~--~~~~L~~A~~~g~~~~v~~L 277 (442)
+..|.||||+|+. .|+.+++++|++. |++++..+ +.||||.|+. +++|
T Consensus 198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence 6666677776666 6666666666655 55555433 3466666664 6666
Q ss_pred HHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Q 013471 278 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 335 (442)
Q Consensus 278 l~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~ 335 (442)
+++ +++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+++|
T Consensus 272 l~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 272 IAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 665 46666666777777777777777777777777777776667777776666543
No 54
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.3e-31 Score=234.82 Aligned_cols=165 Identities=25% Similarity=0.279 Sum_probs=156.9
Q ss_pred cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471 150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 229 (442)
.....+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 103 (192)
T 2rfm_A 24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103 (192)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 34455677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471 230 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA 307 (442)
Q Consensus 230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv 307 (442)
|||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 9999999999999999999999998865 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCC
Q 013471 308 KLLLEAG 314 (442)
Q Consensus 308 ~~Ll~~g 314 (442)
++|+++|
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9999865
No 55
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.3e-30 Score=221.30 Aligned_cols=151 Identities=32% Similarity=0.442 Sum_probs=129.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 240 (442)
..++|+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 4578999999999999999999888876 577889999999999999999999999998888888888888888777776
Q ss_pred HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCC
Q 013471 241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 320 (442)
Q Consensus 241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~ 320 (442)
+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 81 ~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 129 (153)
T 1awc_B 81 NIVEVLLKHG-------------------------------ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129 (153)
T ss_dssp HHHHHHHTTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 6666665554 556677788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHH
Q 013471 321 DRWGNTPLDEGRMCGNKNLIKLL 343 (442)
Q Consensus 321 ~~~g~tpl~~A~~~~~~~~v~~L 343 (442)
|..|+||+|+|+..|+.+++++|
T Consensus 130 ~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 130 SKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999887
No 56
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=5.3e-32 Score=263.23 Aligned_cols=166 Identities=27% Similarity=0.342 Sum_probs=133.7
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHH
Q 013471 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 263 (442)
Q Consensus 184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~ 263 (442)
+.+++..|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..++.||||
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH 89 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999888877777777
Q ss_pred HHHHcCCHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHHHhC--hHHHHHHHHHCCCCCCCC
Q 013471 264 TAVARGDSDFLKRVLSN----GVDPSS-----------------RDYDHRTPLHVAASEG--LYLMAKLLLEAGASVFTK 320 (442)
Q Consensus 264 ~A~~~g~~~~v~~Ll~~----g~~~~~-----------------~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~ga~~~~~ 320 (442)
+|+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|+++|++++.+
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 77777777777777776 665555 6667777777777777 777777777777777777
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 321 DRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 321 ~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
|..|+||||+|+..|+.+++++|+++|++
T Consensus 170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 198 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNREALDLMMDTVPS 198 (364)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 77777777777777777777777777765
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=4.9e-31 Score=227.19 Aligned_cols=136 Identities=29% Similarity=0.374 Sum_probs=120.1
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 230 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 105 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence 35567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471 231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L 310 (442)
||+|+..|+.+++++|+++| ++++.++..|+||||+|+..|+.+++++|
T Consensus 106 L~~A~~~~~~~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (167)
T 3v31_A 106 LLYAVHGNHVKCVKMLLESG-------------------------------ADPTIETDSGYNSMDLAVALGYRSVQQVI 154 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcC-------------------------------CCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99988877777776666655 45556777889999999999999999999
Q ss_pred HHCCCCC
Q 013471 311 LEAGASV 317 (442)
Q Consensus 311 l~~ga~~ 317 (442)
++++++.
T Consensus 155 ~~~~~~~ 161 (167)
T 3v31_A 155 ESHLLKL 161 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 58
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=9.3e-32 Score=248.36 Aligned_cols=199 Identities=19% Similarity=0.164 Sum_probs=174.7
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCc------
Q 013471 193 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------ 255 (442)
Q Consensus 193 ~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~----~~~~g~tpL~~A~~~---~~~~iv~~Ll~~g~~~~~------ 255 (442)
.|+||||.|+..|+.+ ++++|+++|++++. ++..|.||||+|+.. |+.+++++|++.|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4889999999999997 66777789999998 899999999999999 999999999999887663
Q ss_pred -------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHhChHHHHHHHHH---
Q 013471 256 -------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD-------------HRTPLHVAASEGLYLMAKLLLE--- 312 (442)
Q Consensus 256 -------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~Lh~A~~~g~~~iv~~Ll~--- 312 (442)
..+.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 34779999999999999999999999999999886 9999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 313 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 313 ~ga~~~~~~~~g~tpl~~A~~--~~~~~-------~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|++...... .....+..+.+|+|.|...++
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ-------LEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC-------GGGCCCTTSCCHHHHHHHTTC
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc-------cccccCCCCCCHHHHHHHhCC
Confidence 999999999999999999999 88888 99999999986532110 113445667889999988888
Q ss_pred ccCceEEEccCcHHHHHHHHhhhc
Q 013471 384 RRHGIVLWVPHNIEELIKLAVDKL 407 (442)
Q Consensus 384 ~~~~~~~~lp~~~~~ll~~~~~k~ 407 (442)
.+.++.|++.+....
T Consensus 234 ---------~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 234 ---------IEIFRHILQREFSGA 248 (256)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHhCCCCCC
Confidence 778888888776643
No 59
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=7.8e-31 Score=225.47 Aligned_cols=159 Identities=35% Similarity=0.472 Sum_probs=132.8
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 236 (442)
+..+.|+||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 45678899999999999999998874 56677778888899999999999999999999999998888888888888887
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~ 316 (442)
.|+.+++++|+++ |++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 85 YGHYEVAELLVKH-------------------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp TTCHHHHHHHHHT-------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHhC-------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7776666666655 455667778899999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 348 (442)
Q Consensus 317 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a 348 (442)
++.+|..|+||+|+|+. |+.+++++|+++||
T Consensus 134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999999999776 88999999998876
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.2e-30 Score=226.01 Aligned_cols=159 Identities=25% Similarity=0.290 Sum_probs=150.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCC
Q 013471 194 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD 270 (442)
Q Consensus 194 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~ 270 (442)
+.||||.|+..|+.++++.|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 56899999999999999999999887 88999999999999999999999999999999988754 5699999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 350 (442)
Q Consensus 271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~ 350 (442)
.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cc
Q 013471 351 LS 352 (442)
Q Consensus 351 ~~ 352 (442)
..
T Consensus 162 ~~ 163 (172)
T 3v30_A 162 FQ 163 (172)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 61
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.2e-31 Score=256.85 Aligned_cols=197 Identities=18% Similarity=0.174 Sum_probs=160.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--
Q 013471 163 LRVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-- 239 (442)
Q Consensus 163 t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~-- 239 (442)
+.+|.|+..+..++++.|++.|+++|. +|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 346888888889999999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHcC-CCCCcC--CCChHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 013471 240 -DGVTSLLVKEG-ASLNVD--DAGSFLCTAVA----RGDSDFLKRVLSN--------------------GVDPSSRDYDH 291 (442)
Q Consensus 240 -~~iv~~Ll~~g-~~~~~~--~~~~~L~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~~~g 291 (442)
.++++.|++.+ ++++.. .+.||||+|+. .|+.+++++|++. |++++.++..|
T Consensus 179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 67788888776 555554 46799999999 8999999999987 89999999999
Q ss_pred CcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcce
Q 013471 292 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCT 371 (442)
Q Consensus 292 ~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~ 371 (442)
+||||.|+. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|++.. ..+..+
T Consensus 259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~--------------~~d~~G 316 (327)
T 1sw6_A 259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF--------------IANKSG 316 (327)
T ss_dssp -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--------------CCCTTS
T ss_pred CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--------------ccCCCC
Confidence 999999996 8999998 689999999999999999999999999999999643 334556
Q ss_pred ecCCCCCCcc
Q 013471 372 VFPFHPWDEK 381 (442)
Q Consensus 372 ~~~~h~~~~~ 381 (442)
.+|+|.|...
T Consensus 317 ~TpL~~A~~~ 326 (327)
T 1sw6_A 317 LRPVDFGAGL 326 (327)
T ss_dssp CCGGGGTCC-
T ss_pred CCHHHHHHhc
Confidence 7788887654
No 62
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=6.1e-30 Score=227.04 Aligned_cols=171 Identities=26% Similarity=0.417 Sum_probs=157.6
Q ss_pred HhhhcccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCCC
Q 013471 144 KQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINI 222 (442)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~ 222 (442)
..+.......++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+ ..+++++.
T Consensus 22 ~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~ 101 (201)
T 3hra_A 22 KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101 (201)
T ss_dssp HHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred HHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccccc
Confidence 33334444466777788999999999999999999999999999999999999999999999999999999 56789999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCC--CChHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCCCCCcH
Q 013471 223 KDKFGNTPLLEAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGD-----SDFLKRVLSNGVDPSSRDYDHRTP 294 (442)
Q Consensus 223 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~g-~~~~~~~--~~~~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~ 294 (442)
.+..|.||||+|+..|+.+++++|+++| ++++..+ +.||||+|+..++ .+++++|+++|++++.+|..|+||
T Consensus 102 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 181 (201)
T 3hra_A 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181 (201)
T ss_dssp CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCH
Confidence 9999999999999999999999999999 8887754 5699999999998 999999999999999999999999
Q ss_pred HHHHHHhChHHHHHHHHHCC
Q 013471 295 LHVAASEGLYLMAKLLLEAG 314 (442)
Q Consensus 295 Lh~A~~~g~~~iv~~Ll~~g 314 (442)
||+|+..|+.+++++|+++|
T Consensus 182 l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 182 MDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999987
No 63
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=2.8e-30 Score=225.23 Aligned_cols=161 Identities=25% Similarity=0.314 Sum_probs=116.6
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471 160 ELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238 (442)
Q Consensus 160 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~ 238 (442)
.+.++|+.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 356788888888888888888887 5678888888888888888888888888888888888888888888888888877
Q ss_pred CHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCC
Q 013471 239 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 318 (442)
Q Consensus 239 ~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~ 318 (442)
+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 84 ~~~~v~~Ll~~g~~~-------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-------------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132 (179)
T ss_dssp CHHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHcCCCC-------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 777777776666554 4455556666666666666666666666666666
Q ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471 319 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351 (442)
Q Consensus 319 ~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~ 351 (442)
.+|..|+||+++|+..++.+++++|+++|++..
T Consensus 133 ~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 133 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165 (179)
T ss_dssp BCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred hhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 666666666666666666666666666665543
No 64
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=8.6e-30 Score=216.74 Aligned_cols=153 Identities=25% Similarity=0.429 Sum_probs=130.8
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 239 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 239 (442)
+.|+||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 56789999999999999999988 34888888889999999 88899999999999999998888888888888887777
Q ss_pred HHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCC
Q 013471 240 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 319 (442)
Q Consensus 240 ~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~ 319 (442)
.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++ ++++.
T Consensus 81 ~~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 81 LDTLKVLVEHG-------------------------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp HHHHHHHHHTT-------------------------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred HHHHHHHHHcC-------------------------------CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 66666666554 55666777899999999999999999999998 99999
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471 320 KDRWGNTPLDEGRMCGNKNLIKLLEDA 346 (442)
Q Consensus 320 ~~~~g~tpl~~A~~~~~~~~v~~Ll~~ 346 (442)
+|..|+||||+|+..|+.+++++|+++
T Consensus 129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 129 RDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999874
No 65
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.4e-31 Score=247.02 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=171.6
Q ss_pred cCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCC
Q 013471 183 AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQ----KGVDIN----IKDKFGNTPLLEAIKC---GHDGVTSLLVKEGA 251 (442)
Q Consensus 183 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~----~~~~~g~tpL~~A~~~---~~~~iv~~Ll~~g~ 251 (442)
.++..+..|..|.||||+|+..|+.++|+.|++ .+++++ ..+..|.||||+|+.. |+.+++++|++.|+
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 456667788999999999999999999998887 566665 4588999999999987 99999999999986
Q ss_pred CC-------Cc------CCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--------------CCCcHHHHHHHhChH
Q 013471 252 SL-------NV------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY--------------DHRTPLHVAASEGLY 304 (442)
Q Consensus 252 ~~-------~~------~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~t~Lh~A~~~g~~ 304 (442)
+. +. ..+.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 53 21 3577999999999999999999999999999987 799999999999999
Q ss_pred HHHHHHHH---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCcccccccccchhhcccCCCccee
Q 013471 305 LMAKLLLE---AGASVFTKDRWGNTPLDEGRMCGN---------KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTV 372 (442)
Q Consensus 305 ~iv~~Ll~---~ga~~~~~~~~g~tpl~~A~~~~~---------~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
+++++|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++...... .....+..+.
T Consensus 162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~-------~~~~~d~~g~ 234 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-------LEEITNRKGL 234 (273)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC-------GGGCCCTTSC
T ss_pred HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc-------cccccCCCCC
Confidence 99999999 999999999999999999999998 8999999999986543211 0123456677
Q ss_pred cCCCCCCccccccCceEEEccCcHHHHHHHHh
Q 013471 373 FPFHPWDEKVHRRHGIVLWVPHNIEELIKLAV 404 (442)
Q Consensus 373 ~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~ 404 (442)
+|+|.|...++ .+.++.|++.|+
T Consensus 235 TpL~~A~~~g~---------~~iv~~Ll~~ga 257 (273)
T 2pnn_A 235 TPLALAASSGK---------IGVLAYILQREI 257 (273)
T ss_dssp CHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred CHHHHHHHhCh---------HHHHHHHHHCCC
Confidence 89999988888 778899999887
No 66
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-33 Score=255.90 Aligned_cols=185 Identities=21% Similarity=0.235 Sum_probs=171.3
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 013471 155 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 234 (442)
Q Consensus 155 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A 234 (442)
+..+..+.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcC---CCChHHHHH--HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471 235 IKCGHDGVTSLLVKEGASLNVD---DAGSFLCTA--VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309 (442)
Q Consensus 235 ~~~~~~~iv~~Ll~~g~~~~~~---~~~~~L~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~ 309 (442)
+..|+.+++++|++.|++++.. ++.||||+| +..|+.+++++|+++|++++.++..|.||++.++..+. .++
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ 171 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DEL 171 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBC
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---ccc
Confidence 9999999999999999999875 567999999 99999999999999999999999999999997665543 367
Q ss_pred HHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHH
Q 013471 310 LLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKL 342 (442)
Q Consensus 310 Ll~~ga~--~~~~~~~g~tpl~~A~~~~~~~~v~~ 342 (442)
|++.|++ ++.+|..|+||||+|+..|+.++|+.
T Consensus 172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred CccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 8899998 77899999999999999999988865
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=7.9e-30 Score=222.36 Aligned_cols=134 Identities=22% Similarity=0.268 Sum_probs=108.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCH
Q 013471 193 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271 (442)
Q Consensus 193 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~ 271 (442)
.+.++||.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|++
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----------------------- 60 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM----------------------- 60 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-----------------------
Confidence 466778888888888888888876 56677777777777777776666655555554
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351 (442)
Q Consensus 272 ~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~ 351 (442)
+|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 61 --------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 61 --------RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132 (179)
T ss_dssp --------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred --------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 455666778899999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccc
Q 013471 352 SEFHYC 357 (442)
Q Consensus 352 ~~~~~~ 357 (442)
......
T Consensus 133 ~~~~~g 138 (179)
T 3f6q_A 133 ICNKYG 138 (179)
T ss_dssp BCCTTS
T ss_pred hhccCC
Confidence 554433
No 68
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=6.6e-29 Score=214.15 Aligned_cols=139 Identities=37% Similarity=0.505 Sum_probs=120.0
Q ss_pred cccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471 150 ITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 229 (442)
....++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~T 105 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 105 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC
Confidence 34667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471 230 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309 (442)
Q Consensus 230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~ 309 (442)
|||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+..|+.+++++
T Consensus 106 pLh~A~~~g~~~~v~~Ll~~g-------------------------------ad~~~~d~~G~TpL~~A~~~g~~~iv~~ 154 (169)
T 4gpm_A 106 PLHHAAENGHKEVVKLLISKG-------------------------------ADVNTSDSDGRTPLDLAREHGNEEVVKL 154 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcC-------------------------------CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999998887777776666555 5556777889999999999999999999
Q ss_pred HHHCCCCCCC
Q 013471 310 LLEAGASVFT 319 (442)
Q Consensus 310 Ll~~ga~~~~ 319 (442)
|+++||+++.
T Consensus 155 Ll~~GA~ie~ 164 (169)
T 4gpm_A 155 LEKQGGWLEH 164 (169)
T ss_dssp HHTC------
T ss_pred HHHCCCCcCC
Confidence 9999998864
No 69
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.9e-30 Score=237.23 Aligned_cols=176 Identities=16% Similarity=0.083 Sum_probs=105.4
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013471 159 AELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 238 (442)
Q Consensus 159 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~ 238 (442)
..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 35788999999999999999999999988754 67889999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--HHhChHHHHHHHHHC
Q 013471 239 HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVA--ASEGLYLMAKLLLEA 313 (442)
Q Consensus 239 ~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~Lh~A--~~~g~~~iv~~Ll~~ 313 (442)
+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 8888888888887776643 34667777666666677776666666666665555 666666 566666666666666
Q ss_pred CCCCCCC---------CCCCCCHHHHHHHcC
Q 013471 314 GASVFTK---------DRWGNTPLDEGRMCG 335 (442)
Q Consensus 314 ga~~~~~---------~~~g~tpl~~A~~~~ 335 (442)
|++++.. +..+.+|.++|...|
T Consensus 162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp HHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred hhcccccccceEEEEeccCCCCCCcccccCC
Confidence 6665554 334555555555444
No 70
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=1.1e-29 Score=234.92 Aligned_cols=203 Identities=17% Similarity=0.153 Sum_probs=172.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHH----HHHcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCCC------
Q 013471 191 DYDGRSPLHLATSRGYEDITLF----LIQKGVDINIKD----KFGNTPLLEAI---KCGHDGVTSLLVKEGASL------ 253 (442)
Q Consensus 191 ~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~----~~g~tpL~~A~---~~~~~~iv~~Ll~~g~~~------ 253 (442)
+..|+|+||.|++.|+.++++. |++.|++++..+ ..|.||||+|+ ..|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4568999999999999995554 445899999766 77999999999 679999999999987542
Q ss_pred -----CcC--CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHhChHHHHHHHHH
Q 013471 254 -----NVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD--------------YDHRTPLHVAASEGLYLMAKLLLE 312 (442)
Q Consensus 254 -----~~~--~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~Lh~A~~~g~~~iv~~Ll~ 312 (442)
+.. .+.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 222 56799999999999999999999999999998 689999999999999999999999
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCc
Q 013471 313 ---AGASVFTKDRWGNTPLDEGRMCGN---------KNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE 380 (442)
Q Consensus 313 ---~ga~~~~~~~~g~tpl~~A~~~~~---------~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 380 (442)
+|++++.+|..|+||||+|+..++ .+++++|+++|++...... .....+..+.+|+|.|..
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~ 234 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN-------LEALLNNDGLSPLMMAAK 234 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC-------GGGCCCTTSCCHHHHHHH
T ss_pred ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc-------hhhcccCCCCCHHHHHHH
Confidence 999999999999999999999888 7999999999986532211 113455677889999998
Q ss_pred cccccCceEEEccCcHHHHHHHHhhhcCC
Q 013471 381 KVHRRHGIVLWVPHNIEELIKLAVDKLDF 409 (442)
Q Consensus 381 ~~~~~~~~~~~lp~~~~~ll~~~~~k~~~ 409 (442)
.++ .+.++.|++-+...-..
T Consensus 235 ~g~---------~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 235 TGK---------IGIFQHIIRREIADAAA 254 (260)
T ss_dssp TTC---------HHHHHHHHHHHHHHHC-
T ss_pred cCC---------HHHHHHHHHhCCCcccc
Confidence 888 77888999887765544
No 71
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=9e-29 Score=231.11 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=153.9
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCC
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKDKF 226 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~ 226 (442)
.++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+ ..++.+++++|++.|++++..+..
T Consensus 103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~ 182 (276)
T 4hbd_A 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA 182 (276)
T ss_dssp HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence 366778889999999999999999999999998 99999999999999999 678999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhCh
Q 013471 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGL 303 (442)
Q Consensus 227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~ 303 (442)
|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+
T Consensus 183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999999998755 5699999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHCC
Q 013471 304 YLMAKLLLEAG 314 (442)
Q Consensus 304 ~~iv~~Ll~~g 314 (442)
.+++++|++++
T Consensus 263 ~~iv~~Ll~~~ 273 (276)
T 4hbd_A 263 SEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=5.5e-29 Score=227.53 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=120.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHc
Q 013471 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR 268 (442)
Q Consensus 191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~ 268 (442)
+..|.||||.|++.|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+ +.||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 346999999999999999999999999999864 788999999999999999999999999988755 56999999999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHH
Q 013471 269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLED 345 (442)
Q Consensus 269 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~-tpl~~A--~~~~~~~~v~~Ll~ 345 (442)
|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||+|+| +..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877 999999 88899999999999
Q ss_pred cCCCcccc
Q 013471 346 AECTQLSE 353 (442)
Q Consensus 346 ~~a~~~~~ 353 (442)
+|++....
T Consensus 161 ~~a~~~~~ 168 (239)
T 1ycs_B 161 VQEKMGIM 168 (239)
T ss_dssp HHHHTTTT
T ss_pred hhhccccc
Confidence 99876543
No 73
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=3.2e-28 Score=202.23 Aligned_cols=134 Identities=28% Similarity=0.415 Sum_probs=112.9
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHH
Q 013471 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 263 (442)
Q Consensus 184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~ 263 (442)
+++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~----------- 69 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE----------- 69 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-----------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-----------
Confidence 46788888899999999999999999999999999999988888888888888 877777777766554
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 013471 264 TAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 342 (442)
Q Consensus 264 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~ 342 (442)
++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus 70 --------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 70 --------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp --------------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred --------------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence 4556667 8888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCC
Q 013471 343 LEDAECT 349 (442)
Q Consensus 343 Ll~~~a~ 349 (442)
|+++|++
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 8888874
No 74
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=8e-29 Score=217.16 Aligned_cols=161 Identities=23% Similarity=0.334 Sum_probs=141.4
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAI 235 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 235 (442)
+.++|+.|+..|+.+.++.+++.+. +..+ ..|+||||+|+..|+. +++++|+++|++++.++..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 4568999999999999999998774 4455 6799999999999975 5999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHH-----hChHHHHHH
Q 013471 236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVAAS-----EGLYLMAKL 309 (442)
Q Consensus 236 ~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~Lh~A~~-----~g~~~iv~~ 309 (442)
..++.++.+ ..+++++|+++|+++|.+|..|+ ||||+|+. .++.+++++
T Consensus 84 ~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~ 138 (186)
T 3t8k_A 84 QGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138 (186)
T ss_dssp HHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred HcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence 988754422 24678888888999999999999 99999998 445789999
Q ss_pred HHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 013471 310 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 348 (442)
Q Consensus 310 Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a 348 (442)
|++ +|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus 139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999998654
No 75
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=7.9e-28 Score=204.83 Aligned_cols=141 Identities=22% Similarity=0.216 Sum_probs=83.6
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCh-HHHHHH
Q 013471 190 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCTAV 266 (442)
Q Consensus 190 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~--~~~-~L~~A~ 266 (442)
.+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++..+ +.| |||+|+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 3445555666666666666666655555555555555556665553 555555555555555555443 234 666666
Q ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q 013471 267 ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 331 (442)
Q Consensus 267 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A 331 (442)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 66666667777777777888888999999999999999999999999999999999999998744
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=3e-29 Score=227.69 Aligned_cols=192 Identities=16% Similarity=0.063 Sum_probs=157.0
Q ss_pred HHHHHHcCCCCCCCC---CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 013471 177 LKGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 253 (442)
Q Consensus 177 v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~ 253 (442)
++.|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 467889998876554 55778899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHhChHHHHHHHHHCCCCCCCCCCCCCCHH
Q 013471 254 NVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328 (442)
Q Consensus 254 ~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~A--~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl 328 (442)
+..+ +.||||+|+..|+.+++++|+++|++++.++ ..|+||||+| +..|+.+++++|+++|++++.+|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 8765 5699999999999999999999999999987 6999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 329 DEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 329 ~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
+.++..+. .++|++.|++. +....+..+.+|+|.|...++
T Consensus 161 ~~~~~~~~---~~~ll~~ga~~------------~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGESV------------TVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp SCBCCSST---TBCCBCTTCEE------------EEEESSCTTCSSEEEEEETTE
T ss_pred HHHhhccc---cccCccccccc------------cccccCCCcccHHHHHHHcCC
Confidence 86544432 24555555431 123345567789998887776
No 77
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=5.6e-27 Score=194.71 Aligned_cols=132 Identities=24% Similarity=0.322 Sum_probs=117.0
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHH
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPL 231 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~-g~tpL 231 (442)
.++..+..+.||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |.|||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 345666778999999999999999999999999999999999999999999 9999999999999999999998 89999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471 232 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311 (442)
Q Consensus 232 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll 311 (442)
|+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~g-------------------------------a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll 131 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAG-------------------------------ARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTC-------------------------------CCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-------------------------------CCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9988887777777666655 455667778899999999999999999999
Q ss_pred HCCCC
Q 013471 312 EAGAS 316 (442)
Q Consensus 312 ~~ga~ 316 (442)
++|+|
T Consensus 132 ~~Gad 136 (136)
T 1d9s_A 132 AATGD 136 (136)
T ss_dssp HHHCC
T ss_pred HcCCC
Confidence 88875
No 78
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=6.3e-26 Score=188.35 Aligned_cols=62 Identities=35% Similarity=0.481 Sum_probs=34.0
Q ss_pred CCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 013471 286 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 347 (442)
Q Consensus 286 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~ 347 (442)
.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 75 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 34445555555555555555555555555555555555555555555555555555555543
No 79
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.5e-25 Score=182.82 Aligned_cols=126 Identities=44% Similarity=0.666 Sum_probs=93.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHH
Q 013471 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD 272 (442)
Q Consensus 193 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~ 272 (442)
+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---------------------- 58 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---------------------- 58 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC----------------------
Confidence 3677777777777777777777777777777777777777777666665555555544
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 273 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 273 ~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|+++|++
T Consensus 59 ---------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 59 ---------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp ---------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ---------CCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 44555666777888888888888888888888888777777788888888888888888888877763
No 80
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.8e-28 Score=237.86 Aligned_cols=181 Identities=15% Similarity=0.013 Sum_probs=149.1
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHH
Q 013471 160 ELALRVNSAAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLE 233 (442)
Q Consensus 160 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~ 233 (442)
.+.||||.|+..|+.+++++|+++|+.. +..+..|.||||+|+..|+.++|++|+++|+++ +..+.+ .||||+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 3569999999999999999999998732 234556889999999999999999999999863 333333 899999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCc--C--CCChHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHH
Q 013471 234 AIKCGHDGVTSLLVKEGASLNV--D--DAGSFLCTAV-ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 308 (442)
Q Consensus 234 A~~~~~~~iv~~Ll~~g~~~~~--~--~~~~~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~ 308 (442)
|+..|+.+++++|+++|++++. . .+.||||+|+ ..|+.+++++|+++|+ .|.||||+|+..|+.++++
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHH
Confidence 9999999999999999998654 3 3569999999 9999999999999875 3899999999999999999
Q ss_pred HHHHCCCCCC-------------------------------------------------------------CCCCCCCCH
Q 013471 309 LLLEAGASVF-------------------------------------------------------------TKDRWGNTP 327 (442)
Q Consensus 309 ~Ll~~ga~~~-------------------------------------------------------------~~~~~g~tp 327 (442)
+|+++|++++ ...+.+.||
T Consensus 243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~ 322 (376)
T 2aja_A 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322 (376)
T ss_dssp HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence 9998765321 112346788
Q ss_pred HHHHHHcCCHHHHHHHHHcCC
Q 013471 328 LDEGRMCGNKNLIKLLEDAEC 348 (442)
Q Consensus 328 l~~A~~~~~~~~v~~Ll~~~a 348 (442)
||+|+..|+.+++++|++.|+
T Consensus 323 L~~A~~~g~~e~v~lLl~~~~ 343 (376)
T 2aja_A 323 LRLALRLGNQGACALLLSIPS 343 (376)
T ss_dssp HHHHHHHTCTTHHHHHTTSHH
T ss_pred HHHHHHcCcHHHHHHHHcChH
Confidence 999999999999999998764
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.2e-26 Score=197.52 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=117.2
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHH
Q 013471 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLEA 234 (442)
Q Consensus 156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-pL~~A 234 (442)
..+..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 44556789999999999999999999999999999999999999995 99999999999999999999999999 99999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCC--CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013471 235 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 298 (442)
Q Consensus 235 ~~~~~~~iv~~Ll~~g~~~~~~~--~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A 298 (442)
+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999998864 56999999999999999999999999999999999998744
No 82
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.7e-25 Score=185.68 Aligned_cols=128 Identities=31% Similarity=0.429 Sum_probs=105.3
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013471 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 235 (442)
Q Consensus 156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 235 (442)
.....+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC
Q 013471 236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 314 (442)
Q Consensus 236 ~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g 314 (442)
..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g-------------------------------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHG-------------------------------ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcC-------------------------------CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 877776666666555 455567778888888888888888888888875
No 83
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=1.2e-26 Score=192.86 Aligned_cols=134 Identities=37% Similarity=0.477 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHH
Q 013471 184 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 263 (442)
Q Consensus 184 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~ 263 (442)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------------- 66 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK------------- 66 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-------------
Confidence 5667 67788888888888888888888888888888888888888888887777766666666555
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 013471 264 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 343 (442)
Q Consensus 264 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~L 343 (442)
++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..+..+++++|
T Consensus 67 ------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 67 ------------------ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp ------------------CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred ------------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 45556677888888888888888888888888888888888888999888888888888888
Q ss_pred HHcCCC
Q 013471 344 EDAECT 349 (442)
Q Consensus 344 l~~~a~ 349 (442)
.+.+++
T Consensus 129 ~~~~~s 134 (137)
T 3c5r_A 129 EKNESS 134 (137)
T ss_dssp ------
T ss_pred cccccC
Confidence 776654
No 84
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=4.8e-26 Score=196.39 Aligned_cols=148 Identities=29% Similarity=0.336 Sum_probs=121.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCC
Q 013471 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD 270 (442)
Q Consensus 191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~ 270 (442)
...+.|+|+.|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-------------------- 70 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-------------------- 70 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--------------------
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--------------------
Confidence 345678888999888999998888888888888888888888888777766666666554
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 350 (442)
Q Consensus 271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~ 350 (442)
++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 71 -----------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 139 (169)
T 2y1l_E 71 -----------ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139 (169)
T ss_dssp -----------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred -----------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 556677888999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccccccchhhcccCCCcceecCCCCCCcccc
Q 013471 351 LSEFHYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
.. .+..+.+|+|.+...++
T Consensus 140 ~~--------------~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 140 NA--------------QDKFGKTAFDISIDNGN 158 (169)
T ss_dssp TC--------------CCTTSCCHHHHHHHTTC
T ss_pred CC--------------cCCCCCCHHHHHHHhCC
Confidence 32 23445567777666555
No 85
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=3.1e-26 Score=195.83 Aligned_cols=158 Identities=22% Similarity=0.214 Sum_probs=128.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHH
Q 013471 193 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD 272 (442)
Q Consensus 193 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~ 272 (442)
...||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~----------------------- 59 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR----------------------- 59 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-----------------------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-----------------------
Confidence 45688888888888888888888888888888888888888776 666666666555
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 273 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 273 ~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 60 --------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 130 (162)
T 1ihb_A 60 --------GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV- 130 (162)
T ss_dssp --------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT-
T ss_pred --------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC-
Confidence 45566778899999999999999999999999999999999999999999999999999999999998632
Q ss_pred ccccccchhhcccCCCcceecCCCCCCccccccCceEEEccCcHHHHHHHHh
Q 013471 353 EFHYCSQGMIDKMHPRKCTVFPFHPWDEKVHRRHGIVLWVPHNIEELIKLAV 404 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~lp~~~~~ll~~~~ 404 (442)
...+..+.+|+|.+...++ .+.++.|++.|+
T Consensus 131 ------------~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~GA 161 (162)
T 1ihb_A 131 ------------GHRNHKGDTACDLARLYGR---------NEVVSLMQANGA 161 (162)
T ss_dssp ------------TCCCTTSCCHHHHHHHTTC---------HHHHHHHHHTC-
T ss_pred ------------CCcCCCCCcHHHHHHHcCC---------HHHHHHHHHhCC
Confidence 1233455678888877776 566666666544
No 86
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=4.7e-28 Score=234.93 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=153.0
Q ss_pred hhHHHHHHHh-cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHH
Q 013471 161 LALRVNSAAY-HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAIK 236 (442)
Q Consensus 161 ~~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~ 236 (442)
+.+++++|.. .++.+.+++++++|.+ +.||||+|++.|+.++|++|+++|+.. +..+..|.||||+|+.
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~ 137 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence 4567888877 5889999999998865 459999999999999999999999833 2344578899999999
Q ss_pred cCCHHHHHHHHHcCCC-----CCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HhChHHHHH
Q 013471 237 CGHDGVTSLLVKEGAS-----LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS--RDYDHRTPLHVAA-SEGLYLMAK 308 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~-----~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~Lh~A~-~~g~~~iv~ 308 (442)
.|+.+++++|+++|++ ++..+ .||||+|+..|+.+++++|+++|++++. .|..|+||||+|+ ..|+.++|+
T Consensus 138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence 9999999999999975 34444 7999999999999999999999999887 8889999999999 999999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471 309 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 350 (442)
Q Consensus 309 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~ 350 (442)
+|+++|++ |.||+++|+.+|+.+++++|+++|++.
T Consensus 217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence 99998853 889999999999999999999998754
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=3.6e-25 Score=180.50 Aligned_cols=125 Identities=46% Similarity=0.637 Sum_probs=111.8
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 240 (442)
|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 81 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471 241 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316 (442)
Q Consensus 241 ~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~ 316 (442)
+++++|+++|+ +++.++..|+||||+|+..|+.+++++|+++|+|
T Consensus 82 ~~~~~Ll~~g~-------------------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 82 EVVKLLLEAGA-------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-------------------------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 77777666554 4556677888888888888888888888888875
No 88
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=8.3e-27 Score=203.98 Aligned_cols=140 Identities=26% Similarity=0.273 Sum_probs=104.4
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK 236 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~ 236 (442)
+..|.||||.|+..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4567788888888888888888877 77777777788888888888888888888888888877776 667777777776
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~ 316 (442)
.|+.+++++|+++ |++++.+|..|+||||+|+..++.
T Consensus 120 ~~~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~tpl~~A~~~~~~------------ 156 (183)
T 3deo_A 120 YVRPEVVEALVEL-------------------------------GADIEVEDERGLTALELAREILKT------------ 156 (183)
T ss_dssp TTCHHHHHHHHHH-------------------------------TCCTTCCCTTSCCHHHHHHHHHHT------------
T ss_pred cCcHHHHHHHHHc-------------------------------CCCCcCCCCCCCCHHHHHHHhccC------------
Confidence 6666666655555 455566777888888888875433
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 013471 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 346 (442)
Q Consensus 317 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~ 346 (442)
..+.+|+++|+..|+.+++++|.++
T Consensus 157 -----~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -----TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence 3467888888888888888888764
No 89
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=6.1e-25 Score=188.53 Aligned_cols=145 Identities=26% Similarity=0.292 Sum_probs=114.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcC
Q 013471 191 DYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG 269 (442)
Q Consensus 191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g 269 (442)
+..|.||||.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll---------------------- 62 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL---------------------- 62 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH----------------------
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHH----------------------
Confidence 45567777777777777777777773 5556666666667766666665555555555
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 270 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 270 ~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 63 ---------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 63 ---------QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp ---------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ---------hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 55566677888999999999999999999999999999999999999999999999999999999999986
Q ss_pred cccccccccchhhcccCCCcceecCCCCCCc
Q 013471 350 QLSEFHYCSQGMIDKMHPRKCTVFPFHPWDE 380 (442)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 380 (442)
... .+..+.+|+|.+..
T Consensus 134 ~~~--------------~~~~g~t~l~~a~~ 150 (165)
T 3twr_A 134 PTK--------------KNRDGNTPLDLVKD 150 (165)
T ss_dssp TTC--------------CCTTSCCTGGGSCT
T ss_pred Ccc--------------cCCCCCChhHhHhc
Confidence 432 33456678888655
No 90
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=7.3e-25 Score=185.67 Aligned_cols=143 Identities=29% Similarity=0.334 Sum_probs=109.4
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHH
Q 013471 195 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL 274 (442)
Q Consensus 195 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v 274 (442)
.||||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v------------------------------- 50 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTT------------------------------- 50 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHH-------------------------------
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHH-------------------------------
Confidence 466777777777777777777766654 355566666666655555555
Q ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 013471 275 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 354 (442)
Q Consensus 275 ~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~ 354 (442)
++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 51 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-- 128 (153)
T 1awc_B 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-- 128 (153)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--
Confidence 455555566777888999999999999999999999999999999999999999999999999999999999986433
Q ss_pred ccccchhhcccCCCcceecCCCCCCcccc
Q 013471 355 HYCSQGMIDKMHPRKCTVFPFHPWDEKVH 383 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 383 (442)
.+..+.+|+|.+...++
T Consensus 129 ------------~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 129 ------------QSKFCKTAFDISIDNGN 145 (153)
T ss_dssp ------------CCTTSCCHHHHHHHTTC
T ss_pred ------------cCCCCCCHHHHHHHcCC
Confidence 23344566666655544
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=1.4e-24 Score=198.89 Aligned_cols=143 Identities=25% Similarity=0.265 Sum_probs=120.0
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK 236 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~ 236 (442)
+..|.||||.|+..|+.+++++|++ |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 4578899999999999999999999 99999999999999999999999999999999999998888 778888888877
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~ 316 (442)
.|+.+++++|+++ |++++.+|..|+||||+|+..++
T Consensus 121 ~g~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~t~l~~A~~~~~------------- 156 (244)
T 3ui2_A 121 YVRPEVVEALVEL-------------------------------GADIEVEDERGLTALELAREILK------------- 156 (244)
T ss_dssp TTCHHHHHHHHHT-------------------------------TCCTTCCCTTCCCHHHHHHHHHT-------------
T ss_pred cCCHHHHHHHHHC-------------------------------CCCCCCCCCCCCcHHHHHHHHHh-------------
Confidence 7776666666555 45566778889999999986322
Q ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 317 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 317 ~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
...+.|||++|+..|+.+++++|++++..
T Consensus 157 ----~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 ----TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ----TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ----ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 25688999999999999999999987654
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=204.32 Aligned_cols=140 Identities=23% Similarity=0.155 Sum_probs=97.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCC------CCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNK------TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPL 231 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~tpL 231 (442)
..++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 34567777777777777777777777666 466677777777765 667777777777777777777777776
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHH
Q 013471 232 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 311 (442)
Q Consensus 232 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll 311 (442)
|+|+..|+.+++++| +++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus 231 h~A~~~g~~~~v~~L-------------------------------l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll 279 (301)
T 2b0o_E 231 HYAALYNQPDCLKLL-------------------------------LKGRALVGTVNEAGETALDIARKKHHKECEELLE 279 (301)
T ss_dssp HHHHHTTCHHHHHHH-------------------------------HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHH-------------------------------HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 666666555555555 4555666778888999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471 312 EAGASVFTKDRWGNTPLDEGRMCGNK 337 (442)
Q Consensus 312 ~~ga~~~~~~~~g~tpl~~A~~~~~~ 337 (442)
++|++ .|.||||+|+..|+.
T Consensus 280 ~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 280 QAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHH------TTSSCCC--------
T ss_pred HhcCC------CCCChhHHHHhcCCc
Confidence 99886 478999999988864
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=2.6e-24 Score=197.05 Aligned_cols=118 Identities=21% Similarity=0.188 Sum_probs=106.5
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 229 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 146 (244)
T 3ui2_A 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 146 (244)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 55677788889999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHH
Q 013471 230 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 309 (442)
Q Consensus 230 pL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~ 309 (442)
|||+|+..++ ...+.||||+|+..|+.+++++
T Consensus 147 ~l~~A~~~~~------------------------------------------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 147 ALELAREILK------------------------------------------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHHHHHHHT------------------------------------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------------------------------------------------ccCCCCHHHHHHHcChHHHHHH
Confidence 9999985221 1357899999999999999999
Q ss_pred HHHCCCC
Q 013471 310 LLEAGAS 316 (442)
Q Consensus 310 Ll~~ga~ 316 (442)
|++++.+
T Consensus 179 L~~~~~~ 185 (244)
T 3ui2_A 179 LEGQVFE 185 (244)
T ss_dssp HHHHHEE
T ss_pred HHHhccc
Confidence 9987654
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=5.8e-24 Score=185.85 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=82.8
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 229 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 229 (442)
...++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 145 (183)
T 3deo_A 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 145 (183)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCC
Confidence 55677788899999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 013471 230 PLLEAIKCG 238 (442)
Q Consensus 230 pL~~A~~~~ 238 (442)
|||+|+..+
T Consensus 146 pl~~A~~~~ 154 (183)
T 3deo_A 146 ALELAREIL 154 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998743
No 95
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=1e-23 Score=179.03 Aligned_cols=130 Identities=29% Similarity=0.405 Sum_probs=114.9
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013471 151 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 230 (442)
Q Consensus 151 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 230 (442)
....+..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (156)
T 1bd8_A 26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104 (156)
T ss_dssp CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 34566677789999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHH
Q 013471 231 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 310 (442)
Q Consensus 231 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L 310 (442)
||+|+..|+.+++++|++. + +++.+|..|.||||+|+..|+.+++++|
T Consensus 105 L~~A~~~~~~~~v~~Ll~~-~-------------------------------~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 105 IHLAVQEGHTAVVSFLAAE-S-------------------------------DLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp HHHHHHHTCHHHHHHHHTT-S-------------------------------CTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHhc-c-------------------------------CCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999988888877777765 4 4556677888888888888888888888
Q ss_pred HHC
Q 013471 311 LEA 313 (442)
Q Consensus 311 l~~ 313 (442)
+++
T Consensus 153 l~~ 155 (156)
T 1bd8_A 153 QGH 155 (156)
T ss_dssp HTT
T ss_pred Hhh
Confidence 864
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=4.3e-24 Score=173.94 Aligned_cols=110 Identities=30% Similarity=0.311 Sum_probs=69.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCH
Q 013471 192 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 271 (442)
Q Consensus 192 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~ 271 (442)
..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------- 62 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK---------------------- 62 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT----------------------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc----------------------
Confidence 3456666666666666666666666666666666666666666555555444444443
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q 013471 272 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 332 (442)
Q Consensus 272 ~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~ 332 (442)
|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|.
T Consensus 63 ---------g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 63 ---------GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp ---------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred ---------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 3444455666777777777777777777777777777777777777777773
No 97
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.1e-24 Score=190.89 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=119.7
Q ss_pred hhhhHHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC
Q 013471 159 AELALRVNSAAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN 228 (442)
Q Consensus 159 ~~~~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~ga~~~~~~~~g~ 228 (442)
..|.||||+|+..|+. +++++|+++|+++|.+|..|+||||+|+..|+ .+++++|+++|++++.+|..|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 6799999999999985 59999999999999999999999999999987 6889999999999999999999
Q ss_pred -cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHhChHHH
Q 013471 229 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLM 306 (442)
Q Consensus 229 -tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~Lh~A~~~g~~~i 306 (442)
||||+|+..+..+ .++.+++++|++ +|++++.+|..|+||||+|+..|+.++
T Consensus 116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 9999998855421 123467788888 889999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCC
Q 013471 307 AKLLLEAGASVFTKD 321 (442)
Q Consensus 307 v~~Ll~~ga~~~~~~ 321 (442)
|++|.++..+.+.++
T Consensus 170 v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 170 LKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999998765555544
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=2.4e-24 Score=194.29 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=88.7
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 013471 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAI 235 (442)
Q Consensus 157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~ 235 (442)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+||..|+.+++++|+++ |++++.+|..|.||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 344566777777777777777777777777777777777777777777777777777777 7777777777777777776
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCC
Q 013471 236 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 315 (442)
Q Consensus 236 ~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga 315 (442)
..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++++.|+++|+
T Consensus 149 ~~~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 149 WKGYADIVQLLLAKG-------------------------------ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHTCHHHHHHHHHHT-------------------------------CCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHcC-------------------------------CCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 666665555555444 4455666777888888888888888888888877
Q ss_pred CCCCCCCCC
Q 013471 316 SVFTKDRWG 324 (442)
Q Consensus 316 ~~~~~~~~g 324 (442)
+.+..+..|
T Consensus 198 ~~~~~~~~~ 206 (222)
T 3ehr_A 198 VRTLSNAED 206 (222)
T ss_dssp ---------
T ss_pred hhhccchhh
Confidence 776665543
No 99
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.5e-24 Score=178.79 Aligned_cols=129 Identities=24% Similarity=0.334 Sum_probs=110.3
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236 (442)
Q Consensus 157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 236 (442)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCC
Q 013471 237 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 316 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~ 316 (442)
.|+.+++++|+++| ++++.+|..|.||||+|+..+..+++++|.+.+..
T Consensus 86 ~~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 86 NGHVDIVKLLLSYG-------------------------------ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp TTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred cCCHHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 77777766666554 55567788899999999999999998888776543
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=1.4e-23 Score=170.87 Aligned_cols=119 Identities=33% Similarity=0.440 Sum_probs=101.6
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471 158 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 237 (442)
Q Consensus 158 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 237 (442)
+..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHH
Q 013471 238 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMA 307 (442)
Q Consensus 238 ~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv 307 (442)
|+.+++++|+++| ++++.+|..|+||||+|+..+..+++
T Consensus 84 ~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 84 GHVSCVKLLLSKG-------------------------------ADKTVKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp TCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHcC-------------------------------CCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence 8777777666655 45556777888999988655554443
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=7.4e-24 Score=191.03 Aligned_cols=132 Identities=23% Similarity=0.254 Sum_probs=110.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCC
Q 013471 191 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD 270 (442)
Q Consensus 191 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~ 270 (442)
+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------- 128 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ--------------------- 128 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS---------------------
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC---------------------
Confidence 56689999999999999999999999999999999999999999888887777777655
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q 013471 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 350 (442)
Q Consensus 271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~ 350 (442)
.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|++.++..
T Consensus 129 ---------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 129 ---------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp ---------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred ---------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 14566778889999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc
Q 013471 351 LS 352 (442)
Q Consensus 351 ~~ 352 (442)
..
T Consensus 200 ~~ 201 (222)
T 3ehr_A 200 TL 201 (222)
T ss_dssp --
T ss_pred hc
Confidence 43
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=1.1e-22 Score=189.82 Aligned_cols=191 Identities=16% Similarity=0.065 Sum_probs=144.5
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHH
Q 013471 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEA 234 (442)
Q Consensus 157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A 234 (442)
.+..+.++++.+...|+..+.+++...-..... +-..+.... .....-..+++...- ...+.......++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 344566788999999998777766433222111 111111221 111222233433321 11222223345789999
Q ss_pred HHcCCHHHHHHHHHcCCCCCc--------CCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhCh
Q 013471 235 IKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL 303 (442)
Q Consensus 235 ~~~~~~~iv~~Ll~~g~~~~~--------~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~ 303 (442)
+..|+.+.++.+++.|++++. ..+.||||+|+.. |+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 999999999999999988653 3467999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Q 013471 304 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 351 (442)
Q Consensus 304 ~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~ 351 (442)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999998643
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=191.49 Aligned_cols=140 Identities=26% Similarity=0.151 Sum_probs=120.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCChHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCC
Q 013471 224 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHR 292 (442)
Q Consensus 224 ~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~--------~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~ 292 (442)
.....++|+.|+..|+.+.++.|++.|++++. ..+.||||+|+.. |+.+++++|+++|++++.+|..|+
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34456889999999999999999999998875 2456899999987 899999999999999999999999
Q ss_pred cHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccccchhhcccCCCccee
Q 013471 293 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIDKMHPRKCTV 372 (442)
Q Consensus 293 t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ .+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------------------~g~ 287 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------------------TFA 287 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------------------TTS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------------------CCC
Confidence 999999999999999999999999999999999999999999999999999998874 245
Q ss_pred cCCCCCCcccc
Q 013471 373 FPFHPWDEKVH 383 (442)
Q Consensus 373 ~~~h~~~~~~~ 383 (442)
+|+|.|+..++
T Consensus 288 tpLh~A~~~g~ 298 (301)
T 2b0o_E 288 FPLHVDYSWVI 298 (301)
T ss_dssp SCCC-------
T ss_pred ChhHHHHhcCC
Confidence 78998887766
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.1e-22 Score=203.59 Aligned_cols=127 Identities=25% Similarity=0.245 Sum_probs=97.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHH---cCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 162 ALRVNSAAYHGDLYQLKGLIRAGADPNKT------DYDGRSPLHLATS---RGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
.+.||.|+..|+.+.++.|++.|+++|.+ +..|.||||+||. .|+.+++++|+++|++++.+|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36789999999999999999999888877 7788899999966 88889999999999999888888888888
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHH
Q 013471 233 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 312 (442)
Q Consensus 233 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~ 312 (442)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~-------------------------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 261 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRAL-------------------------------VGTVNEAGETALDIARKKHHKECEELLEQ 261 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCC-------------------------------CSCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 88887777777776666555 45556666777777777777777777777
Q ss_pred CCCCCCC
Q 013471 313 AGASVFT 319 (442)
Q Consensus 313 ~ga~~~~ 319 (442)
+|++++.
T Consensus 262 ~ga~~~~ 268 (497)
T 3lvq_E 262 AQAGTFA 268 (497)
T ss_dssp TCC----
T ss_pred hCCCCCC
Confidence 7766655
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=7.1e-22 Score=190.79 Aligned_cols=143 Identities=29% Similarity=0.315 Sum_probs=87.5
Q ss_pred hhHHHHHHHhc-CCHHHHHHHHHcCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013471 161 LALRVNSAAYH-GDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 237 (442)
Q Consensus 161 ~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 237 (442)
+.|+||.|+.. |++++++.|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 45677777777 77777777777777777666 6677777777777777777777777777777777777776666666
Q ss_pred CCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCC---
Q 013471 238 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG--- 314 (442)
Q Consensus 238 ~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~g--- 314 (442)
|+.+++++|+ ++|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus 279 g~~~~v~~LL-------------------------------~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~ 327 (368)
T 3jue_A 279 GHTGLACLFL-------------------------------KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327 (368)
T ss_dssp TCHHHHHHHH-------------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred CcHHHHHHHH-------------------------------HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 5555555554 445556677778888888888888888888888765
Q ss_pred CCCCCCCCCCCCHHHHHHHc
Q 013471 315 ASVFTKDRWGNTPLDEGRMC 334 (442)
Q Consensus 315 a~~~~~~~~g~tpl~~A~~~ 334 (442)
++....+..+.|+++++...
T Consensus 328 ~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 328 AEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp --------------------
T ss_pred ccccccCCCCCCHHHHHHHH
Confidence 33444555677777766554
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=2.7e-21 Score=180.36 Aligned_cols=131 Identities=20% Similarity=0.173 Sum_probs=109.7
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCC------CCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCC
Q 013471 156 KHEAELALRVNSAAYHGDLYQLKGLIRAGADP------NKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKF 226 (442)
Q Consensus 156 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~ 226 (442)
.......++|+.|+..|+.+.++.+++.|+++ +..+..|.||||+|+.. |+.+++++|+++|++++.+|..
T Consensus 125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~ 204 (278)
T 1dcq_A 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 204 (278)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence 34445667899999999999999999999884 44578899999999998 8899999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHH
Q 013471 227 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 306 (442)
Q Consensus 227 g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~i 306 (442)
|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~g-------------------------------ad~~~~d~~g~tpL~~A~~~~~~~~ 253 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGK-------------------------------ASIEIANESGETPLDIAKRLKHEHC 253 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC-------------------------------CCCCCccCCCCCHHHHHHHcCCHHH
Confidence 999998888877777766666555 5566777889999999999999999
Q ss_pred HHHHHHCCCCC
Q 013471 307 AKLLLEAGASV 317 (442)
Q Consensus 307 v~~Ll~~ga~~ 317 (442)
+++|+++|++.
T Consensus 254 v~~Ll~~ga~~ 264 (278)
T 1dcq_A 254 EELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHcCCCC
Confidence 99999988753
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.1e-21 Score=151.28 Aligned_cols=92 Identities=39% Similarity=0.533 Sum_probs=85.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Q 013471 258 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 337 (442)
Q Consensus 258 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 337 (442)
+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 56888888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 013471 338 NLIKLLEDAECT 349 (442)
Q Consensus 338 ~~v~~Ll~~~a~ 349 (442)
+++++|+++|++
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999873
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.1e-21 Score=151.33 Aligned_cols=92 Identities=42% Similarity=0.586 Sum_probs=87.3
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013471 161 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 240 (442)
Q Consensus 161 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 240 (442)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 013471 241 GVTSLLVKEGAS 252 (442)
Q Consensus 241 ~iv~~Ll~~g~~ 252 (442)
+++++|+++|++
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999874
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=4.5e-21 Score=193.76 Aligned_cols=124 Identities=26% Similarity=0.188 Sum_probs=98.3
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCcC--------CCChHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 013471 229 TPLLEAIKCGHDGVTSLLVKEGASLNVD--------DAGSFLCTAVA---RGDSDFLKRVLSNGVDPSSRDYDHRTPLHV 297 (442)
Q Consensus 229 tpL~~A~~~~~~~iv~~Ll~~g~~~~~~--------~~~~~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~ 297 (442)
+.||.|+..|+.++++.|++.|++++.. .+.||||+|+. .|+.+++++|+++|+++|.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4455555555555555555555555432 34466666644 677788888888888899999999999999
Q ss_pred HHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Q 013471 298 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 352 (442)
Q Consensus 298 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~~~~ 352 (442)
|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999999999999998755
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=5.8e-21 Score=184.43 Aligned_cols=125 Identities=26% Similarity=0.267 Sum_probs=96.3
Q ss_pred CChHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHcCC
Q 013471 194 GRSPLHLATSR-GYEDITLFLIQKGVDINIKD--KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGD 270 (442)
Q Consensus 194 g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~--~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~g~ 270 (442)
+.|+||.|+.. |+.++++.|+++|++++..+ ..|.|| ||+|+..|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~Tp-------------------------------Lh~Aa~~g~ 247 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP-------------------------------LIQATAANS 247 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCH-------------------------------HHHHHHTTC
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCH-------------------------------HHHHHHCCC
Confidence 44555555555 55555555555555555544 444455 555555555
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 013471 271 SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 349 (442)
Q Consensus 271 ~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~v~~Ll~~~a~ 349 (442)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++..
T Consensus 248 ~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 5666666666777888899999999999999999999999999999999999999999999999999999999998864
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=2.6e-21 Score=155.28 Aligned_cols=109 Identities=36% Similarity=0.469 Sum_probs=86.8
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCChHHHHHHHc
Q 013471 189 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVAR 268 (442)
Q Consensus 189 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~L~~A~~~ 268 (442)
.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g------------------ 65 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG------------------ 65 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT------------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC------------------
Confidence 45777888888888888888888888888888888888888888887777766666666554
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHH
Q 013471 269 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 328 (442)
Q Consensus 269 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl 328 (442)
++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||-
T Consensus 66 -------------~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 66 -------------ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp -------------CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred -------------CCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 45566777889999999999999999999999999998888888874
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=3.8e-20 Score=148.47 Aligned_cols=102 Identities=36% Similarity=0.512 Sum_probs=95.2
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013471 157 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 236 (442)
Q Consensus 157 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 236 (442)
.+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCcCCC
Q 013471 237 CGHDGVTSLLVKEGASLNVDDA 258 (442)
Q Consensus 237 ~~~~~iv~~Ll~~g~~~~~~~~ 258 (442)
.++.+++++|+++|++++..+.
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~ 106 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSW 106 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSC
T ss_pred CCCHHHHHHHHHcCCCCCcCCc
Confidence 9999999999999888776543
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=2.1e-18 Score=137.14 Aligned_cols=94 Identities=29% Similarity=0.484 Sum_probs=85.7
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013471 153 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 232 (442)
Q Consensus 153 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 232 (442)
.....+..|.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 33456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHH
Q 013471 233 EAIKCGHDGVTSLL 246 (442)
Q Consensus 233 ~A~~~~~~~iv~~L 246 (442)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=4.3e-18 Score=135.37 Aligned_cols=87 Identities=39% Similarity=0.612 Sum_probs=78.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Q 013471 257 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 336 (442)
Q Consensus 257 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 336 (442)
++.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 102 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence 34577777777888888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 013471 337 KNLIKLL 343 (442)
Q Consensus 337 ~~~v~~L 343 (442)
.+++++|
T Consensus 103 ~~~~~~L 109 (110)
T 2zgd_A 103 EDLAEIL 109 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 115
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=97.83 E-value=3.6e-05 Score=66.86 Aligned_cols=75 Identities=17% Similarity=0.445 Sum_probs=71.5
Q ss_pred hhhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 62 ~d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
-.++..+|..+..+|..+.+.+++.++++|++++++++.+++..+....++|++.++.+|+..+.+|++.+|.+.
T Consensus 50 ~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 124 (198)
T 2ptm_A 50 RHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124 (198)
T ss_dssp HHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEE
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEE
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999973
No 116
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=97.76 E-value=3.4e-05 Score=67.34 Aligned_cols=76 Identities=24% Similarity=0.461 Sum_probs=72.0
Q ss_pred hhhhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 61 IIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 61 ~~d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
--.++..+|..+..+|..+.+.+++.++++|.+++++++.+++..+....++|++.++.+|+..+.+|++.+|.+.
T Consensus 50 e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~ 125 (202)
T 3bpz_A 50 EDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125 (202)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEE
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999973
No 117
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=97.71 E-value=7.5e-05 Score=65.61 Aligned_cols=73 Identities=26% Similarity=0.589 Sum_probs=69.3
Q ss_pred hhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 63 d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
.++..+|..+..+|..+++..+. ++++|++++++++..++..+....++|++.++.+|+....+|++.+|.+.
T Consensus 56 ~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 128 (212)
T 3ukn_A 56 ELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSME 128 (212)
T ss_dssp CTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred HHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEE
Confidence 47889999999999999999987 89999999999999999999999999999999999999999999999873
No 118
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=97.39 E-value=0.00019 Score=59.58 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=63.8
Q ss_pred hhhhcCcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 63 d~~~~~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
+++..+|..+..++..+++..+++++++|++.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 7 ~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 80 (160)
T 4f8a_A 7 KVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLE 80 (160)
T ss_dssp --------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEE
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999974
No 119
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=95.95 E-value=0.0065 Score=48.86 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=59.6
Q ss_pred CcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 68 LPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 68 ~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
+|.....+.....+..++.++++|++.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus 8 ~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 76 (139)
T 3ocp_A 8 LPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE 76 (139)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEE
T ss_pred CCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEE
Confidence 333333345566778888999999999999999999999999999999999999999999999999874
No 120
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=95.64 E-value=0.0055 Score=54.05 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=43.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcHHHHH
Q 013471 9 LPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY 74 (442)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~~~~~ 74 (442)
....|.++|.+++++|.+|++++|+++. + .++|+++ +++|+++.+|.....
T Consensus 37 ~~~~l~~~d~~~~~iF~~e~~lr~~~~~----------~----~~~y~~~-~iiDllailP~~~~~ 87 (223)
T 1orq_C 37 YLVRLYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-TLYEIPALVPAGLLA 87 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTTS----------C----HHHHHHH-HHHHCTTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccc----------c----HHHHHHH-hHHHHHHHHHHHHHH
Confidence 3455899999999999999999999962 1 4799998 999999999997654
No 121
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=95.45 E-value=0.02 Score=45.69 Aligned_cols=54 Identities=20% Similarity=0.477 Sum_probs=50.6
Q ss_pred hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
.++.++++|.+.+++.+.++...+....+++++.++.+++....+|++.+|.+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 59 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE 59 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCE
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEE
Confidence 457889999999999999999999999999999999999999999999999874
No 122
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=95.28 E-value=0.025 Score=45.10 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=51.3
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 64 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVS 64 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEE
Confidence 4567899999999999999999999999999999999999999999999999973
No 123
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=94.94 E-value=0.041 Score=44.93 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=53.8
Q ss_pred HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
...+..++.++++|.+.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 91 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD 91 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEE
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEE
Confidence 34456678899999999999999999999999999999999999999999999999974
No 124
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=94.93 E-value=0.022 Score=45.56 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=50.8
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
..++.++++|++.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 58 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGV 58 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEE
Confidence 356789999999999999999999999999999999999999999999999987
No 125
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=94.91 E-value=0.042 Score=44.29 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=51.2
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 57 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKV 57 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEE
Confidence 457789999999999999999999999999999999999999999999999997
No 126
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=94.70 E-value=0.038 Score=45.50 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=54.8
Q ss_pred HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
....+..++.++++|++.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus 32 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 91 (161)
T 3idb_B 32 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD 91 (161)
T ss_dssp HHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEE
T ss_pred HHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEE
Confidence 345566788999999999999999999999999999999999999999999999999873
No 127
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=94.61 E-value=0.051 Score=44.07 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=50.8
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
..+++++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 64 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCV 64 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEE
Confidence 356789999999999999999999999999999999999999999999999987
No 128
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=94.52 E-value=0.028 Score=51.70 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=60.9
Q ss_pred CcHHHHHHHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 68 LPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 68 ~p~~~~~~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
+|.....+.........++++++|++.+++.+.+++..+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 24 ~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~ 92 (299)
T 3shr_A 24 FRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE 92 (299)
T ss_dssp CCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEE
T ss_pred CCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEE
Confidence 444444456677788889999999999999999999999999999999999999999999999999874
No 129
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=94.23 E-value=0.068 Score=45.33 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
......+++++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 34 ~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 34 FEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp HHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 4445678899999999999999999999999999999999999999999999999987
No 130
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=93.23 E-value=0.091 Score=45.41 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=46.6
Q ss_pred hcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 86 EKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 86 ~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
+++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 2 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 51 (216)
T 4ev0_A 2 KGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKV 51 (216)
T ss_dssp --CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCE
T ss_pred CCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEE
Confidence 57899999999999999999999999999999999999999999999987
No 131
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.11 Score=45.86 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=51.5
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
...++++++|++.+++.+.++...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 60 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVD 60 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEE
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEE
Confidence 4567899999999999999999999999999999999999999999999999873
No 132
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=93.03 E-value=0.072 Score=42.19 Aligned_cols=55 Identities=16% Similarity=0.398 Sum_probs=50.4
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhccccccc-CcceeeecCcccceeEEEeecccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFL-PGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~-p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
..++.++++|.+.+++.+..+...+....++ +++.++.+++....+|++.+|.+.
T Consensus 15 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 70 (134)
T 2d93_A 15 LEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE 70 (134)
T ss_dssp HHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEE
T ss_pred HHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEE
Confidence 3456789999999999999999999999999 999999999999999999999873
No 133
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=92.85 E-value=0.12 Score=45.01 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=51.2
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 62 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK 62 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEE
Confidence 3567899999999999999999999999999999999999999999999999873
No 134
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=92.81 E-value=0.1 Score=45.26 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=49.1
Q ss_pred hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
.+++++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v 55 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQL 55 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCE
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceE
Confidence 45788999999999999999999999999999999999999999999999987
No 135
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=92.69 E-value=0.13 Score=48.05 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=51.4
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
..+++++++|++.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 66 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAE 66 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEE
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEE
Confidence 3567899999999999999999999999999999999999999999999999973
No 136
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=92.47 E-value=0.12 Score=43.93 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=51.5
Q ss_pred hhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 81 ~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
+..+++.+++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v 59 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCL 59 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeE
Confidence 4567788999999999999999999999999999999999999999999999987
No 137
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=92.32 E-value=0.11 Score=45.49 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=50.2
Q ss_pred hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
.++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 6 ~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v 58 (231)
T 3e97_A 6 DDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVV 58 (231)
T ss_dssp HHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEE
T ss_pred HHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEE
Confidence 46789999999999999999999999999999999999999999999999987
No 138
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=91.88 E-value=0.22 Score=43.66 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=50.8
Q ss_pred hhhhhhcccCccCCCHHHHHHHHHh--cccccccCcceeeecCcccceeEEEeeccc
Q 013471 81 YMPYIEKVSLFKGCSSEFINQIVIR--VHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 81 ~~~~v~~~~lf~~~s~~~l~~lv~~--~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
....+.++++|.+.+++.+.++... .....+++++.++.+|+....+|++.+|.+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v 72 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 72 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEE
Confidence 4456789999999999999999998 899999999999999999999999999987
No 139
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=91.35 E-value=0.13 Score=45.20 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=51.4
Q ss_pred hhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 81 ~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
...++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v 63 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWV 63 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEE
Confidence 3456789999999999999999999999999999999999999999999999987
No 140
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=91.32 E-value=0.19 Score=45.66 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=52.9
Q ss_pred HhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 79 ~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
......+.++++|.+.+++.+.++...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~ 92 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD 92 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEE
Confidence 3456677889999999999999999999999999999999999999999999999873
No 141
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=91.29 E-value=0.12 Score=45.14 Aligned_cols=54 Identities=19% Similarity=0.415 Sum_probs=50.5
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
..++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v 58 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV 58 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEE
Confidence 346789999999999999999999999999999999999999999999999987
No 142
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=91.02 E-value=0.19 Score=43.93 Aligned_cols=49 Identities=8% Similarity=0.195 Sum_probs=47.1
Q ss_pred cccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 87 ~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
++++|.+.+++.+..+........+++++.++.+|+..+.+|++.+|.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v 62 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKI 62 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCE
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEE
Confidence 7889999999999999999999999999999999999999999999987
No 143
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.36 Score=42.39 Aligned_cols=58 Identities=16% Similarity=0.415 Sum_probs=53.5
Q ss_pred HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
...+..++.++++|...++..+..+...+....+++++.++.+|+....+|++.+|.+
T Consensus 120 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v 177 (246)
T 3of1_A 120 RLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAV 177 (246)
T ss_dssp HHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEE
T ss_pred HHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEE
Confidence 4556677789999999999999999999999999999999999999999999999987
No 144
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=90.42 E-value=0.24 Score=47.96 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=54.5
Q ss_pred HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
........+.++++|++.+++.+.+++..+....+++++.++.+|+....+|++.+|.+
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v 197 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 197 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEE
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEE
Confidence 34556778899999999999999999999999999999999999999999999999987
No 145
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=90.34 E-value=0.25 Score=47.18 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=53.6
Q ss_pred HhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 79 ~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
......+.++++|++.+++.+..++..+....+++++.++.+|+....+|++.+|.+.
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~ 183 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVD 183 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEE
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEE
Confidence 4456778899999999999999999999999999999999999999999999999873
No 146
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=90.33 E-value=0.27 Score=42.82 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=40.8
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
...++..++|.+.+++.+..+...+....+++++.++.+|+....+|++.+|.+
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 63 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSV 63 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEE
Confidence 456788999999999999999999999999999999999999999999999987
No 147
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=88.60 E-value=0.11 Score=51.78 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=41.6
Q ss_pred CChhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhh-hhhhhhhhcCcHHHH
Q 013471 11 ENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVI 73 (442)
Q Consensus 11 ~~~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~-~~~~d~~~~~p~~~~ 73 (442)
..|.++|.++.++|.+|++++|.++. . .++|+++ |+++|+++.+|..+.
T Consensus 239 ~~l~~ie~i~~~iFtiE~ilR~~~~~-----~---------k~~Y~ks~wniiDli~iip~~i~ 288 (514)
T 2r9r_B 239 DPFFIVETLCIIWFSFEFLVRFFACP-----S---------KAGFFTNIMNIIDIVAIIPYYVT 288 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSS-----C---------SSSSTTSHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC-----c---------HHHHHhchhHHHHHHHHHHHHHH
Confidence 34899999999999999999999852 1 2489998 999999999998654
No 148
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=88.35 E-value=0.78 Score=41.49 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=53.9
Q ss_pred HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
...++..++.++++|...+...+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 151 ~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 209 (291)
T 2qcs_B 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSA 209 (291)
T ss_dssp HHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred HHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEE
Confidence 45566677889999999999999999999999999999999999999999999999987
No 149
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=87.95 E-value=0.88 Score=44.47 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=55.2
Q ss_pred HHHHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 75 ~i~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
+.........+.++++|.+.+++.+.++...+....+++++.++.+|+....+|++.+|.+
T Consensus 34 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v 94 (469)
T 1o7f_A 34 SEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL 94 (469)
T ss_dssp HHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEE
Confidence 4445556677889999999999999999999999999999999999999999999999987
No 150
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=87.71 E-value=0.11 Score=49.20 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=0.9
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
.+.++++++|++.+++.+.++...++...++|++.+..+|+..+.+|++.+|.+
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v 280 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV 280 (355)
T ss_dssp HC----------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEE
Confidence 346788999999999999999999999999999999999999999999999987
No 151
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=86.54 E-value=0.44 Score=43.42 Aligned_cols=59 Identities=24% Similarity=0.505 Sum_probs=54.2
Q ss_pred HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
....+..++.++++|...++..+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 151 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v 209 (299)
T 3shr_A 151 KHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209 (299)
T ss_dssp HHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEE
T ss_pred HHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEE
Confidence 34566778889999999999999999999999999999999999999999999999987
No 152
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=84.78 E-value=0.97 Score=42.99 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=54.3
Q ss_pred HHHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 77 ~~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
...++..++.++++|...+...+..+...+....+.+++.++.+|+....+|++.+|.+
T Consensus 242 ~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v 300 (381)
T 4din_B 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTA 300 (381)
T ss_dssp HHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCE
T ss_pred HHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEE
Confidence 45566778889999999999999999999999999999999999999999999999987
No 153
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=84.35 E-value=0.17 Score=43.87 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=49.6
Q ss_pred hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
.++.++++|.+.+++.+..+...+....+++++.++.+|+..+.+|++.+|.+.
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 57 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVR 57 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEE
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEE
Confidence 456788999999999999999999999999999999999999999999999873
No 154
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=83.44 E-value=0.99 Score=43.54 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=53.6
Q ss_pred HHhhhhhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 78 ~~l~~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
..++..++.++++|...+...+..+...+....+.+++.++.+|+....+|++.+|.+
T Consensus 262 ~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v 319 (416)
T 3tnp_B 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEV 319 (416)
T ss_dssp SSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred HHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEE
Confidence 4456678889999999999999999999999999999999999999999999999987
No 155
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=83.02 E-value=0.14 Score=44.46 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=48.0
Q ss_pred hhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeecccc
Q 013471 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 85 v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
+.++++|.+.+++.+..+...+....+++++.++.+|+....+|++.+|.+.
T Consensus 2 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~ 53 (222)
T 1ft9_A 2 PPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLR 53 (222)
T ss_dssp CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEE
T ss_pred cccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEE
Confidence 5678999999999999999999999999999999999999999999999873
No 156
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=81.14 E-value=1.2 Score=37.95 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=40.7
Q ss_pred cCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 89 SLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 89 ~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
.+++..+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 48 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSV 48 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEE
Confidence 46788999999999999999999999999999999999999999987
No 157
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=80.43 E-value=1.4 Score=33.54 Aligned_cols=48 Identities=13% Similarity=0.345 Sum_probs=40.9
Q ss_pred cCcHHHHHHHHhhhcCCCC--CCcccccCCceeeEeeeeecCCeEEEeecC
Q 013471 393 PHNIEELIKLAVDKLDFPD--GHSILSEDGGKILDVDMINDGQKLYLISET 441 (442)
Q Consensus 393 p~~~~~ll~~~~~k~~~~~--~~~~~~~~~~~i~~i~~ird~d~~~~~~~~ 441 (442)
..+++.+|+...++.+.+. -.++.+.+|.+|.+++=+.||| .|+..+.
T Consensus 39 ~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~-~YVa~g~ 88 (108)
T 2dnf_A 39 LNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQ-FYVAVGR 88 (108)
T ss_dssp HTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSC-BEEEECS
T ss_pred ccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCC-EEEEeCC
Confidence 3799999999999998864 4788999999999999999998 7776653
No 158
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=80.28 E-value=2 Score=41.83 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=49.4
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccc-cccCcceeeecCcccceeEEEeecccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEE-FFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e-~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
...+..+++|.+.++..+..+...+..+ .+++++.++.+|+....+|++.+|.+.
T Consensus 336 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~ 391 (469)
T 1o7f_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 391 (469)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEE
T ss_pred HHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEE
Confidence 4567889999999999999999999754 899999999999999999999999873
No 159
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=79.67 E-value=2 Score=46.54 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=49.8
Q ss_pred hhhhcccCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 83 ~~v~~~~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
+.++.+.+|+...+..+.+++..|..+.+++++.++.+|+..+.+|++.+|.+
T Consensus 42 ~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV 94 (999)
T 4f7z_A 42 TRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL 94 (999)
T ss_dssp HHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEE
T ss_pred HHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEE
Confidence 34578999999999999999999999999999999999999999999999977
No 160
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=79.37 E-value=2.2 Score=44.02 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=51.4
Q ss_pred hhhhhhhcccCccCCCHHHHHHHHHhcc-cccccCcceeeecCcccceeEEEeecccc
Q 013471 80 LYMPYIEKVSLFKGCSSEFINQIVIRVH-EEFFLPGEVIMEQGNVVDQLYFVCHGVLG 136 (442)
Q Consensus 80 l~~~~v~~~~lf~~~s~~~l~~lv~~~~-~e~~~p~e~ii~~~~~~~~ly~i~~g~~~ 136 (442)
.....+.++++|.+.+++.+..+...+. ...+++++.++.+|+....+|++.+|.+.
T Consensus 29 ~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~ 86 (694)
T 3cf6_E 29 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 86 (694)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEE
T ss_pred HHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEE
Confidence 3456778999999999999999999997 67899999999999999999999999974
No 161
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=75.15 E-value=2.8 Score=31.05 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=42.7
Q ss_pred eEEEccCcHHHHHHHHhhhcCCCC---CCcc-cccCCceeeE---eeeeecCCeEEEeecCC
Q 013471 388 IVLWVPHNIEELIKLAVDKLDFPD---GHSI-LSEDGGKILD---VDMINDGQKLYLISETQ 442 (442)
Q Consensus 388 ~~~~lp~~~~~ll~~~~~k~~~~~---~~~~-~~~~~~~i~~---i~~ird~d~~~~~~~~~ 442 (442)
+.-..-.++++|+.=+.++|+... +.++ +.+||-+|+| .-.+-|+=.|.++..+|
T Consensus 31 k~GV~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~ge 92 (100)
T 1f2r_I 31 QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACNE 92 (100)
T ss_dssp EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSSS
T ss_pred EEeEEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcCCC
Confidence 444567899999999999999943 2344 6789999977 77777888888887664
No 162
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.06 E-value=1.7 Score=31.66 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=40.2
Q ss_pred EEccCcHHHHHHHHhhhcCCCC-CCc-ccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471 390 LWVPHNIEELIKLAVDKLDFPD-GHS-ILSEDGGKILD---VDMINDGQKLYLISETQ 442 (442)
Q Consensus 390 ~~lp~~~~~ll~~~~~k~~~~~-~~~-~~~~~~~~i~~---i~~ird~d~~~~~~~~~ 442 (442)
-..-.+++||+.-+.++|+... +.. ++.+||-+||| +-.+-|+=.|.++..+|
T Consensus 24 GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge 81 (91)
T 2eel_A 24 GVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQ 81 (91)
T ss_dssp EEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTC
T ss_pred eEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCC
Confidence 3457899999999999999843 344 46679999977 66677888888877654
No 163
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=67.02 E-value=9.5 Score=37.56 Aligned_cols=143 Identities=17% Similarity=0.097 Sum_probs=81.9
Q ss_pred hHHHHHHHhcCCHHHHHHHH----HcCCCCCCCCCCCChHHHHHHHcCC--------------HHHHHHHHHcCCCCCCC
Q 013471 162 ALRVNSAAYHGDLYQLKGLI----RAGADPNKTDYDGRSPLHLATSRGY--------------EDITLFLIQKGVDINIK 223 (442)
Q Consensus 162 ~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~--------------~~~v~~Ll~~ga~~~~~ 223 (442)
...|...++.|+++-...++ +.|..||.. -.+.|..|+..+. .++.+.+.+.|..|+..
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34566777888876555544 457766543 3455555554321 24555666778777643
Q ss_pred CCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCCcCCCChHHHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCcHH
Q 013471 224 DKFGNTPLLEAIKCGHDGV----TSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRV----LSNGVDPSSRDYDHRTPL 295 (442)
Q Consensus 224 ~~~g~tpL~~A~~~~~~~i----v~~Ll~~g~~~~~~~~~~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L 295 (442)
. -.+.+...++.|+.+- ++.+.+.|..++.....+.+...+..|+.+-+..+ .+.|..++.... .+.+
T Consensus 107 t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li 182 (501)
T 4g26_A 107 T--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALL 182 (501)
T ss_dssp H--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHH
T ss_pred H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHH
Confidence 2 1245566777788654 44445567777665555667777888887654444 456766554321 2334
Q ss_pred HHHHHhChHHHHHHHH
Q 013471 296 HVAASEGLYLMAKLLL 311 (442)
Q Consensus 296 h~A~~~g~~~iv~~Ll 311 (442)
...+..|..+-+..++
T Consensus 183 ~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 183 KVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHH
Confidence 4555667655444333
No 164
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=66.73 E-value=2.3 Score=33.54 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcHHHH
Q 013471 13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVI 73 (442)
Q Consensus 13 ~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~~~~ 73 (442)
+.++|+++-++|.+|.++.+.++ + + .++|++ |-++|+++.+|.-..
T Consensus 39 l~~~d~~~~~iFt~E~~lRl~~~---~-------~----~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 39 LYLVDLILVIILWADYAYRAYKS---G-------D----PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---T-------S----TTTTTT-TCGGGTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---C-------C----HHHHHH-HHHHHHHHHHHHHHH
Confidence 77899999999999999998873 1 1 357898 999999999998643
No 165
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=66.17 E-value=4.5 Score=31.94 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=40.3
Q ss_pred ccCcHHHHHHHHhhhcCCCC---CCc-ccccCCceeeE---eeeeecCCeEEEeecCC
Q 013471 392 VPHNIEELIKLAVDKLDFPD---GHS-ILSEDGGKILD---VDMINDGQKLYLISETQ 442 (442)
Q Consensus 392 lp~~~~~ll~~~~~k~~~~~---~~~-~~~~~~~~i~~---i~~ird~d~~~~~~~~~ 442 (442)
.-.+++||+.=+.++|+... +.+ +|.+||-+||| .-.+-|+=+|.++..+|
T Consensus 80 ~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~ge 137 (145)
T 1ibx_B 80 AASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNE 137 (145)
T ss_dssp CCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECSSC
T ss_pred EcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECCCC
Confidence 46889999999999999954 334 46689999977 66777888888887665
No 166
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=65.03 E-value=4.4 Score=35.86 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=38.6
Q ss_pred CccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 90 lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
++...+++.+..+...+....+++++.++.+|+....+|++.+|.+
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v 98 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSV 98 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEE
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEE
Confidence 3456888999999999999999999999999999999999999987
No 167
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=64.03 E-value=1.5 Score=33.68 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred CceEEEccCcHHHHHHHHhhhcCCCCCCcc-cccCCceeeE---eeeeecCCeEEEeecCC
Q 013471 386 HGIVLWVPHNIEELIKLAVDKLDFPDGHSI-LSEDGGKILD---VDMINDGQKLYLISETQ 442 (442)
Q Consensus 386 ~~~~~~lp~~~~~ll~~~~~k~~~~~~~~~-~~~~~~~i~~---i~~ird~d~~~~~~~~~ 442 (442)
..+.-..-.+++||+.-+.++|+...+..+ +.+||-+||| ...+-|+=.|.++..+|
T Consensus 46 s~k~GV~A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~gq 106 (122)
T 1d4b_A 46 TIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQ 106 (122)
T ss_dssp SCEEEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSC
T ss_pred CeEEeEEcCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEecCCC
Confidence 344445678999999999999999755555 5578999977 56666777777776554
No 168
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=63.90 E-value=7.4 Score=32.60 Aligned_cols=41 Identities=15% Similarity=0.456 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 95 SSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 95 s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
+++.+..+...+....+++++.++.+|+..+.+|++.+|.+
T Consensus 2 ~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v 42 (207)
T 2oz6_A 2 KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSV 42 (207)
T ss_dssp CHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEE
T ss_pred CHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEE
Confidence 67788999999999999999999999999999999999987
No 169
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=50.62 E-value=7 Score=31.43 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHhhhceeeEEeCCceEEEechHHHHHHHHhhhhhhhhhhcCcHHHH
Q 013471 13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVI 73 (442)
Q Consensus 13 ~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~v~~~~~i~~~y~~~~~~~d~~~~~p~~~~ 73 (442)
+.++|.++=++|.+|.++.+..+- + .++|+++ -++|+++.+|.-..
T Consensus 54 ~~~id~~~~~iF~~Ey~lRl~~a~----------~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 54 LYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----------C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 778999999999999999998852 1 3578887 78999999998644
No 170
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=50.16 E-value=5.5 Score=34.83 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=42.1
Q ss_pred ccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 91 FKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 91 f~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
|...+++.+..+........+++++.++.+|+....+|++.+|.+
T Consensus 17 ~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v 61 (250)
T 3e6c_C 17 DNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKI 61 (250)
T ss_dssp BSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCE
T ss_pred hhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEE
Confidence 478888999999999999999999999999999999999999987
No 171
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=43.47 E-value=46 Score=32.58 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCcHHHHHHHcCCHH----HHHHH
Q 013471 175 YQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGHDG----VTSLL 246 (442)
Q Consensus 175 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~tpL~~A~~~~~~~----iv~~L 246 (442)
++++.+.+.|..||... -.+.+...++.|+.+-+..++ +.|..|+... -.+.+...++.|..+ +.+.+
T Consensus 91 ~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHH
Confidence 45666677787776432 234566777888876655554 4577666432 124455567778755 45555
Q ss_pred HHcCCCCCcCCCChHHHHHHHcCCHHHHHHHHH
Q 013471 247 VKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS 279 (442)
Q Consensus 247 l~~g~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~ 279 (442)
.+.|..++...-.+.+...+..|+.+-+..+++
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 667887776655566777888888876655554
No 172
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=41.13 E-value=22 Score=30.50 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHH--hcccccccCcceeeecCcccceeEEEeeccc
Q 013471 93 GCSSEFINQIVI--RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 93 ~~s~~~l~~lv~--~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
+.+++.+.+++. ......+++++.++.+|+..+.+|++.+|.+
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v 47 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGIT 47 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEE
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEE
Confidence 456677788875 4788889999999999999999999999987
No 173
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=40.25 E-value=8 Score=32.78 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=35.3
Q ss_pred cCccCCCHHHHHHHHHhcccccccCcceeeecCcccceeEEEeeccc
Q 013471 89 SLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 89 ~lf~~~s~~~l~~lv~~~~~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
|.|...++.-...+...+....+++++.++.+|+....+|++.+|.+
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v 51 (213)
T 1o5l_A 5 KIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTL 51 (213)
T ss_dssp --------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCE
T ss_pred ccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEE
Confidence 34555555566777888888999999999999999999999999987
No 174
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=30.75 E-value=1.1e+02 Score=28.74 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=40.7
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCC--------------CCCCChHHHHHHHcCCHHHHHHHHH
Q 013471 165 VNSAAYHGDLYQLKGLIRAGADPNKT--------------DYDGRSPLHLATSRGYEDITLFLIQ 215 (442)
Q Consensus 165 L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------~~~g~t~L~~A~~~g~~~~v~~Ll~ 215 (442)
-+..+..|+...|+.-+..|-+++.+ -..|.|.+|+|++..+.+++..|+.
T Consensus 26 ac~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 26 ACVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 45566789999999888888776532 2358899999999999999988886
No 175
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=30.32 E-value=34 Score=29.41 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcc---cccccCcceeeecCcccceeEEEeeccc
Q 013471 96 SEFINQIVIRVH---EEFFLPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 96 ~~~l~~lv~~~~---~e~~~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
++.+.++..... ...+++++.++.+++..+.+|++.+|.+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v 72 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAV 72 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEE
Confidence 456666666665 7778999999999999999999999987
No 176
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=27.89 E-value=50 Score=35.48 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=46.3
Q ss_pred hhhhhcccCccCCCHHHHHHHHHhcccccc-cCcceeeecCcccceeEEEeeccc
Q 013471 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFF-LPGEVIMEQGNVVDQLYFVCHGVL 135 (442)
Q Consensus 82 ~~~v~~~~lf~~~s~~~l~~lv~~~~~e~~-~p~e~ii~~~~~~~~ly~i~~g~~ 135 (442)
...+..+++|...+.....+++..+..+.+ ..++.++.+|+..+.+|++..|.+
T Consensus 336 ~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V 390 (999)
T 4f7z_A 336 YDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV 390 (999)
T ss_dssp HHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEE
T ss_pred HHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEE
Confidence 345678899999999999999888876544 568999999999999999999987
No 177
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=23.21 E-value=93 Score=20.89 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhhhcCCCCCCcccccCCceeeEeeeeecCCeEEEee
Q 013471 394 HNIEELIKLAVDKLDFPDGHSILSEDGGKILDVDMINDGQKLYLIS 439 (442)
Q Consensus 394 ~~~~~ll~~~~~k~~~~~~~~~~~~~~~~i~~i~~ird~d~~~~~~ 439 (442)
.++.+|++. ++.....-.+..++.=+..=..++|||.+-|+.
T Consensus 24 ~tv~~Ll~~----l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 24 RRIKDVLGE----LEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp CBHHHHHHH----TTCCTTTEEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred CcHHHHHHH----hCCCCCCEEEEECCEECCCcccCCCCCEEEEEe
Confidence 478888864 344333333444444444345999999998875
No 178
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=21.91 E-value=35 Score=28.18 Aligned_cols=12 Identities=17% Similarity=0.659 Sum_probs=10.8
Q ss_pred eeeeecCCeEEE
Q 013471 426 VDMINDGQKLYL 437 (442)
Q Consensus 426 i~~ird~d~~~~ 437 (442)
+.+.|+||.||+
T Consensus 104 ~~~~R~GDDLy~ 115 (190)
T 2ddz_A 104 IEASRRGDDIYV 115 (190)
T ss_dssp CCEEEETTEEEE
T ss_pred CeeeeccCeeeE
Confidence 588999999997
No 179
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=21.64 E-value=40 Score=23.59 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.3
Q ss_pred eeeecCCeEEEeecC
Q 013471 427 DMINDGQKLYLISET 441 (442)
Q Consensus 427 ~~ird~d~~~~~~~~ 441 (442)
++|+.||.|+++...
T Consensus 59 ~~l~~GD~l~v~g~~ 73 (86)
T 3jxo_A 59 TEILSGDKLYVIVSA 73 (86)
T ss_dssp CBCCTTCEEEEEEET
T ss_pred CEECCCCEEEEEECH
Confidence 579999999998743
No 180
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.60 E-value=77 Score=18.67 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=13.8
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 013471 328 LDEGRMCGNKNLIKLLED 345 (442)
Q Consensus 328 l~~A~~~~~~~~v~~Ll~ 345 (442)
+..|+..|+.+.++.|..
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 457888888888888754
No 181
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=20.57 E-value=1.2e+02 Score=21.56 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=29.1
Q ss_pred CceEEEccC---cHHHHHHHHhhhcCCCCCCcccccCCceeeE-----eeeeecCCeEEEee
Q 013471 386 HGIVLWVPH---NIEELIKLAVDKLDFPDGHSILSEDGGKILD-----VDMINDGQKLYLIS 439 (442)
Q Consensus 386 ~~~~~~lp~---~~~~ll~~~~~k~~~~~~~~~~~~~~~~i~~-----i~~ird~d~~~~~~ 439 (442)
+++.+-+|+ ++.+|++. ++... ..+.-+=++++.. =..++|||.|=|+.
T Consensus 26 NGe~~el~~~~~Tv~dLL~~----L~~~~-~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLAS----YQLEN-KIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHH----TTCTT-SCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCEEEECCCCCCcHHHHHHH----hCCCC-CCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 444444443 68888864 34433 3343344444433 26899999998875
Done!