Query 013472
Match_columns 442
No_of_seqs 316 out of 1686
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugo_A RNA polymerase sigma fa 100.0 8.8E-38 3E-42 302.5 15.5 209 220-428 4-245 (245)
2 1l9z_H Sigma factor SIGA; heli 100.0 3.6E-36 1.2E-40 313.0 23.3 215 223-437 94-341 (438)
3 2a6h_F RNA polymerase sigma fa 100.0 4.1E-36 1.4E-40 311.2 21.2 217 222-438 78-327 (423)
4 3iyd_F RNA polymerase sigma fa 99.9 3.1E-27 1.1E-31 254.7 0.4 176 253-438 338-517 (613)
5 1l0o_C Sigma factor; bergerat 99.8 8.2E-21 2.8E-25 175.8 5.7 152 282-434 14-166 (243)
6 1rp3_A RNA polymerase sigma fa 99.8 4.7E-18 1.6E-22 157.5 15.7 135 295-432 12-151 (239)
7 1or7_A Sigma-24, RNA polymeras 99.7 2.1E-17 7.3E-22 149.3 12.6 140 282-424 9-182 (194)
8 1sig_A Sigma70, RNA polymerase 99.7 1.7E-17 5.7E-22 166.2 12.4 86 283-368 249-338 (339)
9 2q1z_A RPOE, ECF SIGE; ECF sig 99.7 4E-18 1.4E-22 153.1 3.9 144 280-424 10-177 (184)
10 3mzy_A RNA polymerase sigma-H 99.5 1.1E-13 3.7E-18 120.7 9.8 105 319-424 1-150 (164)
11 2lfw_A PHYR sigma-like domain; 99.4 1.1E-15 3.6E-20 136.4 -6.2 125 297-424 3-135 (157)
12 3n0r_A Response regulator; sig 99.4 8.5E-14 2.9E-18 136.1 4.7 127 292-423 17-152 (286)
13 2o7g_A Probable RNA polymerase 99.3 7.5E-12 2.6E-16 104.9 8.6 85 285-372 13-98 (112)
14 1h3l_A RNA polymerase sigma fa 99.2 1.5E-11 5.1E-16 98.5 6.0 77 290-368 6-83 (87)
15 3clo_A Transcriptional regulat 97.7 1.1E-08 3.7E-13 98.2 -19.3 138 285-424 86-238 (258)
16 1rp3_A RNA polymerase sigma fa 92.8 3.8 0.00013 36.7 15.4 35 254-288 100-134 (239)
17 3hug_A RNA polymerase sigma fa 91.7 0.16 5.5E-06 40.6 4.3 30 395-424 50-79 (92)
18 1l9z_H Sigma factor SIGA; heli 91.7 2.3 8E-05 44.0 14.0 28 397-424 394-421 (438)
19 3t72_q RNA polymerase sigma fa 90.8 0.27 9.1E-06 40.9 4.8 27 397-423 38-64 (99)
20 1x3u_A Transcriptional regulat 90.5 0.44 1.5E-05 36.3 5.5 41 384-424 17-57 (79)
21 2p7v_B Sigma-70, RNA polymeras 90.3 0.45 1.5E-05 35.7 5.3 28 397-424 24-51 (68)
22 1ku3_A Sigma factor SIGA; heli 89.5 0.54 1.8E-05 35.8 5.2 27 397-423 29-55 (73)
23 1tty_A Sigma-A, RNA polymerase 89.3 0.52 1.8E-05 37.3 5.2 28 397-424 37-64 (87)
24 2o8x_A Probable RNA polymerase 88.7 0.67 2.3E-05 34.3 5.1 29 396-424 29-57 (70)
25 1je8_A Nitrate/nitrite respons 88.0 0.2 7E-06 39.4 1.9 29 396-424 34-62 (82)
26 1tc3_C Protein (TC3 transposas 87.3 0.9 3.1E-05 30.6 4.7 26 398-423 21-46 (51)
27 2jt1_A PEFI protein; solution 86.9 1.1 3.6E-05 35.7 5.5 39 384-422 9-48 (77)
28 3c57_A Two component transcrip 86.3 0.36 1.2E-05 39.1 2.5 28 396-423 40-67 (95)
29 2jpc_A SSRB; DNA binding prote 86.3 0.53 1.8E-05 34.2 3.2 29 396-424 11-39 (61)
30 1xsv_A Hypothetical UPF0122 pr 84.1 1.4 4.7E-05 37.0 5.2 29 396-424 39-67 (113)
31 2x48_A CAG38821; archeal virus 84.1 1.3 4.4E-05 31.5 4.4 25 397-421 30-54 (55)
32 1fse_A GERE; helix-turn-helix 83.3 1.7 5.8E-05 32.4 5.0 28 396-423 24-51 (74)
33 2rnj_A Response regulator prot 81.4 0.92 3.1E-05 36.1 2.9 28 397-424 43-70 (91)
34 3ulq_B Transcriptional regulat 80.9 1.8 6.3E-05 34.8 4.6 28 397-424 43-70 (90)
35 1s7o_A Hypothetical UPF0122 pr 79.9 1.9 6.4E-05 36.3 4.5 29 396-424 36-64 (113)
36 2a6h_F RNA polymerase sigma fa 79.1 3.5 0.00012 42.2 7.1 27 397-423 379-405 (423)
37 1l0o_C Sigma factor; bergerat 78.3 0.43 1.5E-05 43.0 0.0 29 396-424 212-240 (243)
38 3k2z_A LEXA repressor; winged 77.4 4.3 0.00015 36.6 6.5 43 380-422 6-48 (196)
39 1p4w_A RCSB; solution structur 77.0 1.9 6.4E-05 35.5 3.6 27 398-424 49-75 (99)
40 3mn2_A Probable ARAC family tr 70.3 9.1 0.00031 30.7 6.2 39 383-421 3-41 (108)
41 1l3l_A Transcriptional activat 69.8 5 0.00017 36.9 5.0 29 396-424 186-214 (234)
42 2heo_A Z-DNA binding protein 1 67.8 8.1 0.00028 29.1 5.0 29 395-423 22-50 (67)
43 2k9s_A Arabinose operon regula 66.3 11 0.00037 30.3 5.8 39 383-421 4-43 (107)
44 2q0o_A Probable transcriptiona 66.0 5.3 0.00018 36.8 4.3 28 397-424 189-216 (236)
45 3oou_A LIN2118 protein; protei 65.2 12 0.00042 30.0 5.9 39 383-421 6-44 (108)
46 3oio_A Transcriptional regulat 64.5 9.4 0.00032 31.0 5.1 39 383-421 8-46 (113)
47 3lsg_A Two-component response 64.4 15 0.0005 29.2 6.2 38 384-421 4-42 (103)
48 1jko_C HIN recombinase, DNA-in 63.3 4.7 0.00016 27.3 2.6 25 398-422 21-45 (52)
49 3szt_A QCSR, quorum-sensing co 62.1 6.7 0.00023 36.4 4.3 28 397-424 189-216 (237)
50 1qbj_A Protein (double-strande 60.7 17 0.00059 28.7 5.9 28 396-423 25-52 (81)
51 1zx4_A P1 PARB, plasmid partit 59.8 7.4 0.00025 36.0 4.0 28 397-424 23-50 (192)
52 3kz3_A Repressor protein CI; f 58.6 21 0.00073 26.8 5.9 37 383-421 12-48 (80)
53 1jhf_A LEXA repressor; LEXA SO 57.5 18 0.00061 32.3 6.2 38 383-420 10-48 (202)
54 3qp6_A CVIR transcriptional re 55.2 10 0.00035 36.0 4.3 28 397-424 211-238 (265)
55 1qgp_A Protein (double strande 54.7 18 0.0006 28.2 4.9 27 397-423 30-56 (77)
56 2w7n_A TRFB transcriptional re 53.8 10 0.00035 31.6 3.5 30 395-424 31-60 (101)
57 1oyi_A Double-stranded RNA-bin 52.7 13 0.00046 29.8 3.9 24 399-422 31-54 (82)
58 3mkl_A HTH-type transcriptiona 52.5 18 0.00062 29.6 4.9 38 384-421 9-46 (120)
59 1uxc_A FRUR (1-57), fructose r 52.3 12 0.0004 28.4 3.4 25 399-423 1-25 (65)
60 1lmb_3 Protein (lambda repress 51.5 31 0.0011 26.3 5.9 40 380-421 14-53 (92)
61 2htj_A P fimbrial regulatory p 50.9 22 0.00075 27.1 4.9 26 397-422 13-38 (81)
62 2fmy_A COOA, carbon monoxide o 49.6 74 0.0025 27.8 8.9 42 382-423 141-192 (220)
63 1bl0_A Protein (multiple antib 49.4 18 0.00062 30.0 4.5 40 382-421 11-50 (129)
64 3bpv_A Transcriptional regulat 49.2 64 0.0022 25.9 7.9 26 397-422 42-67 (138)
65 3dv8_A Transcriptional regulat 49.2 44 0.0015 29.0 7.3 26 398-423 169-194 (220)
66 1jhg_A Trp operon repressor; c 48.1 22 0.00074 29.7 4.6 21 398-418 58-78 (101)
67 3oou_A LIN2118 protein; protei 48.0 46 0.0016 26.4 6.6 41 315-355 17-57 (108)
68 3mky_B Protein SOPB; partition 47.2 27 0.00093 32.3 5.6 50 374-428 23-72 (189)
69 3oio_A Transcriptional regulat 46.8 51 0.0017 26.4 6.8 54 311-364 15-68 (113)
70 1y7y_A C.AHDI; helix-turn-heli 46.5 56 0.0019 23.4 6.4 36 384-421 14-49 (74)
71 1xn7_A Hypothetical protein YH 45.7 35 0.0012 26.7 5.4 25 397-421 15-39 (78)
72 2a6c_A Helix-turn-helix motif; 45.3 51 0.0017 25.0 6.2 36 384-421 19-54 (83)
73 2qwt_A Transcriptional regulat 44.9 40 0.0014 28.9 6.2 39 380-418 14-52 (196)
74 3tqn_A Transcriptional regulat 44.2 18 0.0006 29.8 3.5 25 398-422 33-57 (113)
75 3f6w_A XRE-family like protein 44.0 56 0.0019 24.3 6.2 23 398-420 27-49 (83)
76 2b5a_A C.BCLI; helix-turn-heli 43.8 63 0.0022 23.4 6.4 24 397-420 22-45 (77)
77 3e6c_C CPRK, cyclic nucleotide 43.8 53 0.0018 29.5 7.1 26 398-423 177-202 (250)
78 1r69_A Repressor protein CI; g 43.5 40 0.0014 23.9 5.1 25 397-421 13-37 (69)
79 3iyd_F RNA polymerase sigma fa 43.4 9.1 0.00031 40.9 2.1 28 397-424 569-596 (613)
80 2l0k_A Stage III sporulation p 43.4 29 0.00098 28.3 4.6 23 399-421 21-43 (93)
81 4ham_A LMO2241 protein; struct 43.4 18 0.00061 30.6 3.5 26 397-422 37-62 (134)
82 3qkx_A Uncharacterized HTH-typ 43.3 53 0.0018 27.1 6.6 46 373-418 2-48 (188)
83 1y6u_A XIS, excisionase from t 42.8 17 0.0006 28.0 3.1 26 397-422 15-40 (70)
84 1jgs_A Multiple antibiotic res 42.5 59 0.002 26.2 6.6 66 348-422 7-72 (138)
85 3klo_A Transcriptional regulat 42.1 44 0.0015 29.5 6.2 39 390-428 166-204 (225)
86 3s8q_A R-M controller protein; 41.9 67 0.0023 23.8 6.4 35 384-420 12-46 (82)
87 3mkl_A HTH-type transcriptiona 41.4 53 0.0018 26.7 6.1 53 311-364 15-67 (120)
88 1d5y_A ROB transcription facto 41.2 51 0.0018 30.5 6.7 34 255-288 5-38 (292)
89 1q1h_A TFE, transcription fact 40.9 18 0.00063 29.0 3.1 29 395-423 30-58 (110)
90 3bd1_A CRO protein; transcript 40.8 41 0.0014 25.1 5.0 23 400-422 13-35 (79)
91 2ewt_A BLDD, putative DNA-bind 40.7 88 0.003 22.2 6.7 25 397-421 20-46 (71)
92 1zug_A Phage 434 CRO protein; 40.5 47 0.0016 23.6 5.1 25 397-421 15-39 (71)
93 2b0l_A GTP-sensing transcripti 40.5 18 0.00062 29.5 3.0 27 397-423 42-68 (102)
94 2fq4_A Transcriptional regulat 40.4 52 0.0018 28.0 6.2 41 378-418 11-52 (192)
95 2fbh_A Transcriptional regulat 40.2 1.3E+02 0.0046 24.1 8.5 27 396-422 50-76 (146)
96 3oop_A LIN2960 protein; protei 40.2 86 0.0029 25.5 7.3 65 349-422 11-75 (143)
97 2ef8_A C.ECOT38IS, putative tr 40.2 75 0.0026 23.4 6.4 24 397-420 22-45 (84)
98 2q24_A Putative TETR family tr 40.1 45 0.0015 28.3 5.7 38 381-418 17-54 (194)
99 2fa5_A Transcriptional regulat 40.0 73 0.0025 26.5 6.9 26 397-422 62-87 (162)
100 3b81_A Transcriptional regulat 39.8 50 0.0017 27.8 5.9 40 378-417 10-50 (203)
101 2vn2_A DNAD, chromosome replic 39.7 17 0.0006 30.6 2.9 26 397-422 50-75 (128)
102 3lhq_A Acrab operon repressor 39.3 58 0.002 27.5 6.3 40 379-418 14-54 (220)
103 2v79_A DNA replication protein 39.3 58 0.002 27.9 6.2 34 397-430 50-85 (135)
104 3neu_A LIN1836 protein; struct 39.3 23 0.00078 29.7 3.5 26 397-422 36-61 (125)
105 3anp_C Transcriptional repress 39.2 57 0.0019 27.9 6.3 41 378-418 8-49 (204)
106 3knw_A Putative transcriptiona 39.1 56 0.0019 27.7 6.2 40 379-418 14-54 (212)
107 2cfx_A HTH-type transcriptiona 39.1 52 0.0018 27.7 5.8 26 397-422 18-43 (144)
108 3e97_A Transcriptional regulat 39.0 42 0.0014 29.6 5.5 26 398-423 175-200 (231)
109 2wiu_B HTH-type transcriptiona 38.9 67 0.0023 24.0 6.0 24 397-420 24-47 (88)
110 3g5g_A Regulatory protein; tra 38.9 71 0.0024 25.4 6.4 37 383-421 28-64 (99)
111 3i4p_A Transcriptional regulat 38.9 38 0.0013 29.4 5.1 24 399-422 18-41 (162)
112 3by6_A Predicted transcription 38.9 23 0.0008 29.8 3.5 26 397-422 34-59 (126)
113 2f07_A YVDT; helix-turn-helix, 38.8 47 0.0016 28.5 5.7 40 379-418 10-50 (197)
114 3lwj_A Putative TETR-family tr 38.7 60 0.0021 27.3 6.3 41 378-418 11-52 (202)
115 2xi8_A Putative transcription 38.6 30 0.001 24.3 3.7 25 397-421 13-37 (66)
116 1j9i_A GPNU1 DBD;, terminase s 38.5 19 0.00066 26.8 2.6 25 399-423 3-27 (68)
117 2rek_A Putative TETR-family tr 38.4 42 0.0014 28.5 5.2 40 379-418 16-55 (199)
118 3knw_A Putative transcriptiona 38.3 1.8E+02 0.0061 24.4 9.8 76 266-341 30-107 (212)
119 2g7s_A Transcriptional regulat 38.2 49 0.0017 27.4 5.6 40 379-418 8-48 (194)
120 2k9q_A Uncharacterized protein 38.2 49 0.0017 24.4 5.0 23 398-420 15-37 (77)
121 2e1c_A Putative HTH-type trans 38.2 27 0.00092 30.9 4.0 26 398-423 41-66 (171)
122 3f2g_A Alkylmercury lyase; MER 38.2 36 0.0012 32.1 5.0 29 395-423 33-61 (220)
123 2wus_R RODZ, putative uncharac 38.2 50 0.0017 27.3 5.4 22 398-419 20-41 (112)
124 3vpr_A Transcriptional regulat 38.1 35 0.0012 28.9 4.7 38 381-418 5-43 (190)
125 2gau_A Transcriptional regulat 38.1 92 0.0032 27.3 7.7 26 398-423 180-205 (232)
126 3qbm_A TETR transcriptional re 38.0 51 0.0017 27.6 5.7 38 380-417 8-46 (199)
127 3vp5_A Transcriptional regulat 38.0 51 0.0017 28.2 5.8 40 379-418 12-52 (189)
128 1lj9_A Transcriptional regulat 38.0 1.2E+02 0.0042 24.4 8.0 25 398-422 43-67 (144)
129 3b02_A Transcriptional regulat 37.9 36 0.0012 29.4 4.8 26 398-423 139-164 (195)
130 3on4_A Transcriptional regulat 37.9 40 0.0014 28.1 4.9 47 372-418 3-50 (191)
131 2qtq_A Transcriptional regulat 37.8 55 0.0019 27.7 5.9 45 374-418 11-56 (213)
132 3kz9_A SMCR; transcriptional r 37.8 61 0.0021 27.2 6.2 40 379-418 17-57 (206)
133 3b7h_A Prophage LP1 protein 11 37.7 58 0.002 23.7 5.3 25 397-421 19-43 (78)
134 2r1j_L Repressor protein C2; p 37.6 63 0.0022 22.6 5.4 24 398-421 18-41 (68)
135 3kkc_A TETR family transcripti 37.6 37 0.0013 28.1 4.7 39 379-417 12-51 (177)
136 3eco_A MEPR; mutlidrug efflux 37.6 72 0.0025 25.8 6.4 26 397-422 46-71 (139)
137 3f1b_A TETR-like transcription 37.3 63 0.0021 27.1 6.1 40 379-418 14-54 (203)
138 2y75_A HTH-type transcriptiona 37.2 62 0.0021 26.7 5.9 28 396-423 24-51 (129)
139 1pb6_A Hypothetical transcript 37.2 66 0.0023 27.2 6.3 41 378-418 17-58 (212)
140 1pdn_C Protein (PRD paired); p 37.2 38 0.0013 26.9 4.5 26 398-423 33-58 (128)
141 3dcf_A Transcriptional regulat 37.0 66 0.0022 27.3 6.3 40 379-418 31-71 (218)
142 2ek5_A Predicted transcription 37.0 26 0.00089 29.7 3.6 27 397-423 27-53 (129)
143 3d0s_A Transcriptional regulat 36.9 62 0.0021 28.4 6.3 26 398-423 177-202 (227)
144 2eh3_A Transcriptional regulat 36.8 51 0.0018 27.6 5.5 38 381-418 4-42 (179)
145 3fm5_A Transcriptional regulat 36.7 74 0.0025 26.2 6.4 66 349-422 13-78 (150)
146 3bhq_A Transcriptional regulat 36.7 63 0.0021 27.8 6.2 40 379-418 12-52 (211)
147 3ppb_A Putative TETR family tr 36.7 64 0.0022 26.7 6.1 38 381-418 11-49 (195)
148 2dbb_A Putative HTH-type trans 36.5 59 0.002 27.4 5.8 26 397-422 22-47 (151)
149 3egq_A TETR family transcripti 36.5 39 0.0013 27.9 4.6 40 379-418 4-44 (170)
150 3cwr_A Transcriptional regulat 36.4 53 0.0018 27.6 5.6 41 378-418 16-57 (208)
151 3gzi_A Transcriptional regulat 36.4 50 0.0017 28.2 5.4 41 378-418 16-57 (218)
152 2pex_A Transcriptional regulat 36.4 97 0.0033 25.5 7.1 66 348-422 20-85 (153)
153 2p5v_A Transcriptional regulat 36.3 58 0.002 27.9 5.8 25 398-422 24-48 (162)
154 3vib_A MTRR; helix-turn-helix 36.2 64 0.0022 27.7 6.1 40 379-418 10-50 (210)
155 1rkt_A Protein YFIR; transcrip 36.2 54 0.0018 28.1 5.6 38 380-417 13-51 (205)
156 2p5k_A Arginine repressor; DNA 35.9 74 0.0025 22.5 5.5 27 396-422 17-48 (64)
157 1u78_A TC3 transposase, transp 35.8 44 0.0015 27.3 4.8 26 398-423 22-47 (141)
158 3bro_A Transcriptional regulat 35.8 94 0.0032 25.0 6.8 26 397-422 49-74 (141)
159 3kor_A Possible Trp repressor; 35.7 49 0.0017 28.4 5.0 26 397-422 74-99 (119)
160 2k02_A Ferrous iron transport 35.7 41 0.0014 27.1 4.4 26 397-422 15-40 (87)
161 1adr_A P22 C2 repressor; trans 35.7 58 0.002 23.5 5.0 23 398-420 18-40 (76)
162 1sfu_A 34L protein; protein/Z- 35.7 27 0.00094 27.7 3.2 43 379-423 12-54 (75)
163 2jt1_A PEFI protein; solution 35.6 51 0.0017 25.8 4.8 31 257-287 12-42 (77)
164 2ibd_A Possible transcriptiona 35.3 68 0.0023 27.4 6.1 40 379-418 14-54 (204)
165 2nnn_A Probable transcriptiona 35.3 1.5E+02 0.005 23.7 7.9 64 349-422 13-76 (140)
166 3ryp_A Catabolite gene activat 35.2 54 0.0019 28.2 5.5 26 398-423 167-192 (210)
167 2v57_A TETR family transcripti 35.1 55 0.0019 27.4 5.4 39 379-418 14-52 (190)
168 3qq6_A HTH-type transcriptiona 35.0 30 0.001 26.1 3.3 25 397-421 22-46 (78)
169 1ft9_A Carbon monoxide oxidati 35.0 68 0.0023 28.1 6.2 25 399-423 164-188 (222)
170 3bru_A Regulatory protein, TET 35.0 67 0.0023 27.5 6.0 45 374-418 22-70 (222)
171 2kpj_A SOS-response transcript 34.9 59 0.002 25.1 5.2 24 397-420 21-44 (94)
172 2rdp_A Putative transcriptiona 34.9 91 0.0031 25.5 6.7 25 398-422 56-80 (150)
173 1yio_A Response regulatory pro 34.7 47 0.0016 28.6 5.0 29 396-424 155-183 (208)
174 1v4r_A Transcriptional repress 34.7 14 0.00049 29.5 1.5 27 397-423 34-60 (102)
175 2vt3_A REX, redox-sensing tran 34.7 56 0.0019 30.2 5.7 51 372-422 7-57 (215)
176 3dew_A Transcriptional regulat 34.7 56 0.0019 27.3 5.4 39 380-418 9-48 (206)
177 3col_A Putative transcription 34.6 37 0.0013 28.3 4.2 44 372-415 3-47 (196)
178 2wui_A MEXZ, transcriptional r 34.6 72 0.0025 27.5 6.2 40 379-418 11-51 (210)
179 3mn2_A Probable ARAC family tr 34.5 69 0.0023 25.3 5.6 38 255-292 4-41 (108)
180 1j5y_A Transcriptional regulat 34.5 77 0.0026 28.1 6.5 39 384-423 23-61 (187)
181 2ras_A Transcriptional regulat 34.3 59 0.002 27.8 5.6 39 379-417 11-50 (212)
182 1a04_A Nitrate/nitrite respons 34.2 38 0.0013 29.5 4.3 29 396-424 167-195 (215)
183 2fu4_A Ferric uptake regulatio 34.1 45 0.0015 25.2 4.2 27 397-423 32-63 (83)
184 2ofy_A Putative XRE-family tra 34.0 64 0.0022 24.2 5.1 21 400-420 29-49 (86)
185 2zcm_A Biofilm operon icaabcd 33.9 56 0.0019 27.5 5.3 37 382-418 10-47 (192)
186 3dpj_A Transcription regulator 33.7 78 0.0027 26.5 6.2 40 379-418 8-48 (194)
187 3bni_A Putative TETR-family tr 33.5 78 0.0027 27.8 6.4 50 369-418 33-83 (229)
188 3la7_A Global nitrogen regulat 33.4 96 0.0033 27.7 7.0 26 398-423 193-218 (243)
189 3crj_A Transcription regulator 33.3 69 0.0024 27.5 5.9 40 378-417 13-53 (199)
190 2nx4_A Transcriptional regulat 33.2 79 0.0027 26.9 6.2 39 380-418 11-50 (194)
191 3dkw_A DNR protein; CRP-FNR, H 33.1 98 0.0034 26.9 6.9 26 398-423 178-203 (227)
192 2g7g_A RHA04620, putative tran 33.0 51 0.0018 29.2 5.1 36 381-417 13-48 (213)
193 2l8n_A Transcriptional repress 33.0 21 0.00073 27.1 2.1 24 398-421 9-32 (67)
194 2o7t_A Transcriptional regulat 32.9 67 0.0023 27.3 5.6 40 379-418 8-48 (199)
195 2zb9_A Putative transcriptiona 32.9 64 0.0022 27.7 5.6 40 379-418 23-63 (214)
196 2ia0_A Putative HTH-type trans 32.7 69 0.0024 28.1 5.8 25 398-422 31-55 (171)
197 2hku_A A putative transcriptio 32.6 74 0.0025 27.4 6.0 39 380-418 21-59 (215)
198 2cyy_A Putative HTH-type trans 32.4 75 0.0026 26.8 5.8 25 398-422 21-45 (151)
199 2dt5_A AT-rich DNA-binding pro 32.3 55 0.0019 30.2 5.2 50 373-422 3-52 (211)
200 3cdl_A Transcriptional regulat 32.0 69 0.0024 27.4 5.6 38 380-417 10-48 (203)
201 3bs3_A Putative DNA-binding pr 32.0 44 0.0015 24.2 3.7 25 397-421 22-46 (76)
202 3s2w_A Transcriptional regulat 31.9 1.5E+02 0.0051 24.6 7.7 66 348-422 23-88 (159)
203 3deu_A Transcriptional regulat 31.7 98 0.0034 26.4 6.5 66 349-422 27-92 (166)
204 1z4h_A TORI, TOR inhibition pr 31.6 36 0.0012 25.3 3.2 28 398-425 10-37 (66)
205 4ghj_A Probable transcriptiona 31.4 98 0.0034 25.1 6.1 36 382-419 35-70 (101)
206 2fjr_A Repressor protein CI; g 31.4 69 0.0024 27.8 5.6 22 400-421 22-43 (189)
207 2cg4_A Regulatory protein ASNC 31.4 78 0.0027 26.7 5.7 26 397-422 21-46 (152)
208 3eus_A DNA-binding protein; st 31.2 1.2E+02 0.0042 23.0 6.4 35 384-420 15-49 (86)
209 2xdn_A HTH-type transcriptiona 31.2 61 0.0021 27.8 5.1 40 379-418 11-51 (210)
210 3jsj_A Putative TETR-family tr 31.1 87 0.003 26.2 6.0 39 380-418 10-48 (190)
211 3he0_A Transcriptional regulat 30.9 64 0.0022 27.0 5.1 34 382-415 14-48 (196)
212 2o38_A Hypothetical protein; a 30.9 72 0.0025 26.5 5.3 33 397-429 52-84 (120)
213 3f0c_A TETR-molecule A, transc 30.9 84 0.0029 26.7 6.0 39 380-418 12-51 (216)
214 2d6y_A Putative TETR family re 30.8 83 0.0028 27.0 6.0 38 381-418 10-48 (202)
215 2dg7_A Putative transcriptiona 30.7 71 0.0024 26.9 5.4 39 380-418 8-47 (195)
216 2rae_A Transcriptional regulat 30.7 84 0.0029 26.6 5.9 40 379-418 17-57 (207)
217 2a61_A Transcriptional regulat 30.7 83 0.0028 25.5 5.7 25 398-422 47-71 (145)
218 2elh_A CG11849-PA, LD40883P; s 30.6 45 0.0016 25.9 3.8 24 399-422 39-62 (87)
219 2w25_A Probable transcriptiona 30.3 45 0.0015 28.2 4.0 25 398-422 21-45 (150)
220 2w48_A Sorbitol operon regulat 30.2 64 0.0022 31.0 5.6 28 396-423 19-46 (315)
221 2zcw_A TTHA1359, transcription 30.2 61 0.0021 27.9 5.0 25 399-423 147-171 (202)
222 1x57_A Endothelial differentia 30.2 87 0.003 23.8 5.4 24 397-420 25-48 (91)
223 3cjn_A Transcriptional regulat 30.0 93 0.0032 25.9 6.0 26 397-422 65-90 (162)
224 3omt_A Uncharacterized protein 30.0 47 0.0016 24.2 3.6 24 398-421 21-44 (73)
225 2zcx_A SCO7815, TETR-family tr 29.8 1E+02 0.0034 27.4 6.5 42 377-418 21-63 (231)
226 3c2b_A Transcriptional regulat 29.7 78 0.0027 27.1 5.6 40 379-418 15-55 (221)
227 3f8m_A GNTR-family protein tra 29.5 52 0.0018 30.7 4.6 27 396-422 34-60 (248)
228 1zk8_A Transcriptional regulat 29.4 56 0.0019 27.2 4.5 37 381-417 10-47 (183)
229 2d1h_A ST1889, 109AA long hypo 29.4 39 0.0013 26.1 3.2 27 396-422 34-60 (109)
230 2phc_B Uncharacterized protein 29.2 86 0.0029 29.4 6.0 43 365-423 80-122 (225)
231 3c3w_A Two component transcrip 28.9 51 0.0017 29.2 4.3 28 397-424 163-190 (225)
232 3pas_A TETR family transcripti 28.8 49 0.0017 27.5 4.0 40 379-418 8-48 (195)
233 3bja_A Transcriptional regulat 28.8 75 0.0025 25.5 5.0 25 398-422 47-71 (139)
234 2lnb_A Z-DNA-binding protein 1 28.7 96 0.0033 24.8 5.3 32 392-423 28-59 (80)
235 3gbg_A TCP pilus virulence reg 28.7 1.9E+02 0.0063 26.4 8.3 49 315-364 181-229 (276)
236 1sgm_A Putative HTH-type trans 28.7 51 0.0017 27.4 4.0 36 380-415 7-43 (191)
237 3r0a_A Putative transcriptiona 28.4 81 0.0028 26.0 5.2 25 399-423 43-67 (123)
238 3s5r_A Transcriptional regulat 28.4 84 0.0029 26.6 5.5 39 380-418 11-50 (216)
239 2gen_A Probable transcriptiona 28.4 89 0.003 26.6 5.7 37 382-418 10-47 (197)
240 1on2_A Transcriptional regulat 28.4 1.1E+02 0.0038 25.1 6.1 26 397-422 21-46 (142)
241 3mvp_A TETR/ACRR transcription 28.4 84 0.0029 26.6 5.5 41 378-418 25-66 (217)
242 3fx3_A Cyclic nucleotide-bindi 28.3 91 0.0031 27.4 5.9 27 398-424 178-204 (237)
243 1k78_A Paired box protein PAX5 28.3 61 0.0021 27.1 4.5 26 398-423 48-73 (149)
244 3q0w_A HTH-type transcriptiona 28.3 84 0.0029 27.7 5.6 40 379-418 44-84 (236)
245 2kfs_A Conserved hypothetical 28.1 37 0.0013 30.2 3.1 27 397-423 30-56 (148)
246 2yve_A Transcriptional regulat 28.0 1.1E+02 0.0037 25.8 6.1 38 381-418 6-44 (185)
247 2bgc_A PRFA; bacterial infecti 28.0 1.2E+02 0.0041 26.9 6.7 26 398-423 169-195 (238)
248 2e19_A Transcription factor 8; 27.9 1.2E+02 0.0042 22.4 5.6 21 400-420 32-52 (64)
249 3keo_A Redox-sensing transcrip 27.9 50 0.0017 30.7 4.1 52 372-423 6-57 (212)
250 3hsr_A HTH-type transcriptiona 27.8 63 0.0022 26.4 4.4 26 397-422 49-74 (140)
251 1r71_A Transcriptional repress 27.8 78 0.0027 28.5 5.3 27 398-424 52-78 (178)
252 3vk0_A NHTF, transcriptional r 27.7 1.1E+02 0.0038 24.5 5.8 35 384-420 22-56 (114)
253 2id3_A Putative transcriptiona 27.7 86 0.0029 27.4 5.6 40 379-418 40-80 (225)
254 2k9l_A RNA polymerase sigma fa 27.7 47 0.0016 25.7 3.3 26 398-423 48-73 (76)
255 3t76_A VANU, transcriptional r 27.7 47 0.0016 26.3 3.4 25 397-421 36-60 (88)
256 3gbg_A TCP pilus virulence reg 27.6 84 0.0029 28.8 5.7 38 383-420 170-207 (276)
257 2hyt_A TETR-family transcripti 27.5 78 0.0027 26.9 5.1 40 379-418 12-52 (197)
258 2fd5_A Transcriptional regulat 27.4 54 0.0018 27.3 4.0 39 379-417 7-46 (180)
259 3rh2_A Hypothetical TETR-like 27.0 71 0.0024 27.3 4.8 38 381-418 5-43 (212)
260 1i1g_A Transcriptional regulat 27.0 1E+02 0.0035 25.4 5.6 25 398-422 18-42 (141)
261 3cjd_A Transcriptional regulat 26.9 96 0.0033 26.6 5.7 41 378-418 11-52 (198)
262 3geu_A Intercellular adhesion 26.9 47 0.0016 27.8 3.5 37 381-417 5-42 (189)
263 2qib_A TETR-family transcripti 26.8 91 0.0031 27.4 5.6 41 378-418 12-53 (231)
264 3ccy_A Putative TETR-family tr 26.8 47 0.0016 28.4 3.5 38 379-416 14-52 (203)
265 2dg8_A Putative TETR-family tr 26.8 65 0.0022 27.3 4.5 40 379-418 9-49 (193)
266 3kcc_A Catabolite gene activat 26.7 1E+02 0.0034 28.0 6.0 26 398-423 217-242 (260)
267 1t33_A Putative transcriptiona 26.6 81 0.0028 27.1 5.1 40 379-418 12-51 (224)
268 1hw1_A FADR, fatty acid metabo 26.6 45 0.0015 30.2 3.5 26 397-422 30-55 (239)
269 2of7_A Putative TETR-family tr 26.6 1.1E+02 0.0037 27.6 6.1 40 379-418 48-88 (260)
270 2i10_A Putative TETR transcrip 26.6 98 0.0033 26.5 5.6 37 382-418 14-51 (202)
271 3nrv_A Putative transcriptiona 26.5 2.3E+02 0.008 22.9 7.8 75 337-422 4-78 (148)
272 3bjb_A Probable transcriptiona 26.5 97 0.0033 26.7 5.6 40 379-418 22-62 (207)
273 3on2_A Probable transcriptiona 26.5 38 0.0013 28.3 2.8 38 379-416 12-50 (199)
274 2jj7_A Hemolysin II regulatory 26.4 58 0.002 27.2 4.0 39 380-418 8-47 (186)
275 3loc_A HTH-type transcriptiona 26.4 57 0.0019 27.6 4.0 40 379-418 18-58 (212)
276 2hyj_A Putative TETR-family tr 26.3 81 0.0028 27.0 5.0 39 379-417 12-51 (200)
277 2qko_A Possible transcriptiona 26.3 57 0.002 28.1 4.1 40 379-418 28-68 (215)
278 2oi8_A Putative regulatory pro 26.2 1.1E+02 0.0039 26.8 6.1 40 378-417 15-55 (216)
279 3iwz_A CAP-like, catabolite ac 26.2 93 0.0032 27.1 5.5 25 399-423 188-212 (230)
280 2ict_A Antitoxin HIGA; helix-t 26.2 1.3E+02 0.0044 23.0 5.7 23 398-420 21-43 (94)
281 2w53_A Repressor, SMet; antibi 26.1 83 0.0028 27.1 5.1 37 381-417 13-50 (219)
282 3e6m_A MARR family transcripti 26.1 1.1E+02 0.0037 25.6 5.7 25 398-422 67-91 (161)
283 2glo_A Brinker CG9653-PA; prot 26.0 57 0.0019 23.3 3.3 22 401-422 28-49 (59)
284 1u8b_A ADA polyprotein; protei 25.9 68 0.0023 26.5 4.3 38 382-421 79-116 (133)
285 1t6s_A Conserved hypothetical 25.8 1.4E+02 0.0047 26.7 6.5 42 381-422 5-48 (162)
286 2np5_A Transcriptional regulat 25.8 95 0.0032 26.6 5.4 38 381-418 11-49 (203)
287 2g7h_A Methylated-DNA--protein 25.7 36 0.0012 30.8 2.6 64 356-421 51-119 (167)
288 2iu5_A DHAS, YCEG, HTH-type dh 25.7 48 0.0016 28.2 3.4 39 379-417 13-52 (195)
289 2qww_A Transcriptional regulat 25.7 1.2E+02 0.0041 24.9 5.9 25 398-422 55-79 (154)
290 1s3j_A YUSO protein; structura 25.4 88 0.003 25.7 4.9 25 398-422 51-75 (155)
291 2fbq_A Probable transcriptiona 25.4 1.2E+02 0.0041 26.7 6.1 39 380-418 8-47 (235)
292 4hbl_A Transcriptional regulat 25.2 1.4E+02 0.0047 24.6 6.1 26 397-422 54-79 (149)
293 2ahq_A Sigma-54, RNA polymeras 25.2 1.3E+02 0.0043 23.7 5.4 44 382-425 19-69 (76)
294 2hr3_A Probable transcriptiona 25.1 2.1E+02 0.0071 23.1 7.2 26 397-422 49-74 (147)
295 2oer_A Probable transcriptiona 25.1 83 0.0028 27.2 4.9 40 379-418 24-64 (214)
296 1ais_B TFB TFIIB, protein (tra 25.0 3.5E+02 0.012 23.7 10.9 30 395-424 162-191 (200)
297 1zyb_A Transcription regulator 25.0 83 0.0028 27.9 5.0 26 398-423 186-211 (232)
298 2guh_A Putative TETR-family tr 25.0 1.1E+02 0.0039 26.6 5.9 41 378-418 38-79 (214)
299 3nnr_A Transcriptional regulat 25.0 80 0.0027 27.4 4.8 38 381-418 7-45 (228)
300 1gdt_A GD resolvase, protein ( 24.7 3.4E+02 0.012 23.4 9.7 25 397-421 157-181 (183)
301 3v6g_A Probable transcriptiona 24.5 1E+02 0.0035 26.9 5.4 39 380-418 15-54 (208)
302 4aci_A HTH-type transcriptiona 24.3 51 0.0018 27.6 3.3 40 379-418 14-54 (191)
303 2pij_A Prophage PFL 6 CRO; tra 24.2 1.1E+02 0.0036 21.8 4.6 24 400-423 15-38 (67)
304 1wrj_A Methylated-DNA--protein 24.0 88 0.003 27.8 4.8 63 357-421 46-111 (156)
305 3ljl_A Transcriptional regulat 24.0 73 0.0025 26.3 4.2 40 379-418 14-54 (156)
306 3e7q_A Transcriptional regulat 23.9 69 0.0023 27.0 4.0 40 379-418 14-54 (215)
307 1ylf_A RRF2 family protein; st 23.9 70 0.0024 27.3 4.1 28 396-423 28-55 (149)
308 2gfn_A HTH-type transcriptiona 23.8 1.1E+02 0.0038 26.4 5.5 40 379-418 9-49 (209)
309 2oz6_A Virulence factor regula 23.7 50 0.0017 28.4 3.1 26 398-423 164-189 (207)
310 3edp_A LIN2111 protein; APC883 23.6 1.2E+02 0.0042 27.8 6.0 26 397-422 32-57 (236)
311 3mnl_A KSTR, transcriptional r 23.6 71 0.0024 26.8 4.0 40 379-418 20-60 (203)
312 3bj6_A Transcriptional regulat 23.6 1.3E+02 0.0045 24.5 5.7 25 398-422 54-78 (152)
313 3ni7_A Bacterial regulatory pr 23.6 1.4E+02 0.0048 26.2 6.2 40 379-418 7-47 (213)
314 3op9_A PLI0006 protein; struct 23.5 1.4E+02 0.0048 23.6 5.7 23 398-420 22-44 (114)
315 1d5y_A ROB transcription facto 23.4 53 0.0018 30.4 3.4 38 383-420 4-41 (292)
316 3nrg_A TETR family transcripti 23.4 53 0.0018 28.0 3.3 39 379-417 13-52 (217)
317 3cuo_A Uncharacterized HTH-typ 23.3 60 0.002 24.8 3.2 27 396-422 36-62 (99)
318 2jn6_A Protein CGL2762, transp 23.3 62 0.0021 25.2 3.4 26 398-423 23-48 (97)
319 4edg_A DNA primase; catalytic 23.3 17 0.00057 36.2 -0.1 93 317-424 232-326 (329)
320 1xmk_A Double-stranded RNA-spe 23.3 1E+02 0.0036 24.2 4.6 25 398-422 25-50 (79)
321 1sfx_A Conserved hypothetical 23.0 65 0.0022 24.6 3.4 25 398-422 34-58 (109)
322 2wv0_A YVOA, HTH-type transcri 23.0 1.4E+02 0.0048 27.5 6.3 26 397-422 33-58 (243)
323 2bv6_A MGRA, HTH-type transcri 22.9 81 0.0028 25.6 4.2 66 348-422 9-75 (142)
324 1neq_A DNA-binding protein NER 22.9 53 0.0018 25.1 2.8 25 396-420 20-44 (74)
325 1rr7_A Middle operon regulator 22.9 1.8E+02 0.006 24.8 6.4 51 370-424 68-118 (129)
326 2x4h_A Hypothetical protein SS 22.8 1.3E+02 0.0045 24.4 5.5 27 396-422 29-55 (139)
327 3lfp_A CSP231I C protein; tran 22.7 1.6E+02 0.0053 22.7 5.7 23 398-420 14-40 (98)
328 3qbm_A TETR transcriptional re 22.6 3.2E+02 0.011 22.4 9.7 74 266-339 23-97 (199)
329 1ku9_A Hypothetical protein MJ 22.4 1.6E+02 0.0056 23.5 6.0 26 397-422 40-65 (152)
330 3frw_A Putative Trp repressor 22.4 1E+02 0.0034 26.0 4.5 28 395-422 55-82 (107)
331 2cw1_A SN4M; lambda CRO fold, 22.4 77 0.0026 24.0 3.5 25 400-424 15-39 (65)
332 3him_A Probable transcriptiona 22.3 58 0.002 27.4 3.2 37 379-415 16-53 (211)
333 3f52_A CLP gene regulator (CLG 22.1 1.8E+02 0.0061 23.1 6.1 23 398-420 41-63 (117)
334 3eet_A Putative GNTR-family tr 22.1 1.4E+02 0.0049 28.1 6.3 26 397-422 52-77 (272)
335 2k9s_A Arabinose operon regula 22.1 2.8E+02 0.0097 21.6 9.4 38 255-292 5-43 (107)
336 1rzs_A Antirepressor, regulato 22.0 60 0.002 23.6 2.8 20 400-419 12-31 (61)
337 3g1o_A Transcriptional regulat 22.0 99 0.0034 27.5 4.9 40 379-418 43-83 (255)
338 3ppb_A Putative TETR family tr 22.0 3.2E+02 0.011 22.2 10.4 73 266-338 25-98 (195)
339 1y0u_A Arsenical resistance op 22.0 81 0.0028 24.5 3.8 25 398-422 43-67 (96)
340 1z91_A Organic hydroperoxide r 22.0 91 0.0031 25.4 4.3 25 398-422 54-78 (147)
341 3hta_A EBRA repressor; TETR fa 21.8 1.3E+02 0.0046 26.0 5.7 39 380-418 29-68 (217)
342 3c07_A Putative TETR-family tr 21.7 1.5E+02 0.0052 27.2 6.2 41 378-418 40-81 (273)
343 1sig_A Sigma70, RNA polymerase 21.7 31 0.001 33.7 1.4 19 236-254 1-19 (339)
344 2fbi_A Probable transcriptiona 21.6 79 0.0027 25.4 3.8 25 398-422 50-74 (142)
345 3ivp_A Putative transposon-rel 21.6 1.8E+02 0.0061 23.5 6.1 24 397-420 24-47 (126)
346 2o03_A Probable zinc uptake re 21.4 1.6E+02 0.0055 24.4 5.8 39 385-423 13-56 (131)
347 2r0q_C Putative transposon TN5 21.3 89 0.003 28.0 4.4 27 397-423 174-200 (209)
348 3p7n_A Sensor histidine kinase 21.3 53 0.0018 29.3 2.9 28 397-424 212-239 (258)
349 2ao9_A Phage protein; structur 21.1 80 0.0027 28.1 3.9 25 396-420 46-70 (155)
350 2eth_A Transcriptional regulat 21.1 2E+02 0.0068 23.7 6.4 25 398-422 58-82 (154)
351 3rkx_A Biotin-[acetyl-COA-carb 21.0 99 0.0034 30.2 5.0 33 391-423 12-44 (323)
352 3bwg_A Uncharacterized HTH-typ 20.9 67 0.0023 29.7 3.6 25 397-421 28-52 (239)
353 3fmy_A HTH-type transcriptiona 20.9 60 0.002 24.1 2.7 23 398-420 24-46 (73)
354 1b0n_A Protein (SINR protein); 20.9 85 0.0029 24.5 3.7 24 398-421 14-37 (111)
355 1vz0_A PARB, chromosome partit 20.9 1E+02 0.0035 28.6 4.8 26 398-423 134-159 (230)
356 3trb_A Virulence-associated pr 20.9 81 0.0028 25.5 3.7 33 396-429 25-57 (104)
357 2pn6_A ST1022, 150AA long hypo 20.8 74 0.0025 26.7 3.6 26 398-423 17-42 (150)
358 2ppx_A AGR_C_3184P, uncharacte 20.8 86 0.0029 24.5 3.7 24 397-420 42-65 (99)
359 4aik_A Transcriptional regulat 20.8 2.9E+02 0.0099 23.1 7.4 28 395-422 43-70 (151)
360 1y9q_A Transcriptional regulat 20.8 1.9E+02 0.0066 25.0 6.4 24 397-420 23-46 (192)
361 1ufm_A COP9 complex subunit 4; 20.6 1.3E+02 0.0046 23.7 4.8 37 395-431 27-67 (84)
362 1nd9_A Translation initiation 20.6 75 0.0026 21.6 2.9 24 400-423 4-27 (49)
363 4ev0_A Transcription regulator 20.6 63 0.0022 27.9 3.1 26 398-423 163-188 (216)
364 3cdh_A Transcriptional regulat 20.5 1.4E+02 0.005 24.5 5.3 25 398-422 57-81 (155)
365 3nxc_A HTH-type protein SLMA; 20.5 74 0.0025 26.9 3.5 32 384-415 30-62 (212)
366 2di3_A Bacterial regulatory pr 20.5 69 0.0024 29.2 3.5 26 397-422 27-52 (239)
367 2iai_A Putative transcriptiona 20.4 1.1E+02 0.0037 26.8 4.8 32 384-415 35-67 (230)
368 1p2f_A Response regulator; DRR 20.3 81 0.0028 27.4 3.8 40 386-425 152-194 (220)
369 3o9x_A Uncharacterized HTH-typ 20.2 1.7E+02 0.0059 23.9 5.7 25 397-421 83-107 (133)
370 2g3b_A Putative TETR-family tr 20.2 86 0.003 27.1 4.0 39 380-418 4-43 (208)
371 2l49_A C protein; P2 bacteriop 20.1 81 0.0028 24.2 3.4 23 398-420 17-39 (99)
372 1bl0_A Protein (multiple antib 20.1 3.5E+02 0.012 21.9 8.5 38 255-292 13-50 (129)
373 3qwg_A ESX-1 secretion-associa 20.1 73 0.0025 26.8 3.3 13 402-414 63-75 (123)
374 2pg4_A Uncharacterized protein 20.0 89 0.003 24.1 3.7 28 395-422 27-55 (95)
375 3qqa_A CMER; alpha-helical, he 20.0 58 0.002 27.7 2.8 38 378-415 18-56 (216)
No 1
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=8.8e-38 Score=302.47 Aligned_cols=209 Identities=25% Similarity=0.399 Sum_probs=128.3
Q ss_pred ChhHHHHHHhcccCC-CCCChHHHHHHHHHhHHHHHHH-HHHHHH--HHH-----------------------hCCCCCh
Q 013472 220 PTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLE-RIKTTL--EKE-----------------------SGKAASL 272 (442)
Q Consensus 220 ~~~~~~~~~~~~~~~-~lLt~eeE~eL~~~iq~~~~le-~~~~~L--~~~-----------------------~gr~pt~ 272 (442)
.+.|.++-|++.+++ ||||++||++|+++|+.++.+. .+.... +.. .+.+|+.
T Consensus 4 ~~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~ 83 (245)
T 3ugo_A 4 MTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 83 (245)
T ss_dssp -CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHH
T ss_pred CCCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchh
Confidence 345778999999997 9999999999999999987633 332210 000 1468889
Q ss_pred HHHHHHcCCCH----HHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCCh
Q 013472 273 NCWAQAAGVSE----RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348 (442)
Q Consensus 273 ~ewA~a~g~de----eeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rF 348 (442)
.+||.+.+++. ..|+..++.|..|+++||..|.++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F 163 (245)
T 3ugo_A 84 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 163 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcH
Confidence 99999987753 45666677777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhC--CCHHHHHHHHHhcccCC
Q 013472 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVG 426 (442)
Q Consensus 349 STYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LG--IS~etVk~~l~~ar~~~ 426 (442)
+||++||||++|.++++++.+.+++|.++.+.+.++.++.+.|...+++.||++|||+.|| ||+++|++++..++.++
T Consensus 164 ~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 164 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred CC
Q 013472 427 SI 428 (442)
Q Consensus 427 SL 428 (442)
||
T Consensus 244 sl 245 (245)
T 3ugo_A 244 SL 245 (245)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=3.6e-36 Score=312.95 Aligned_cols=215 Identities=26% Similarity=0.404 Sum_probs=190.4
Q ss_pred HHHHHHhcccCC-CCCChHHHHHHHHHhHHHHHHHHHHHH------------------HHHHhCCCCChHHHHH------
Q 013472 223 FSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTT------------------LEKESGKAASLNCWAQ------ 277 (442)
Q Consensus 223 ~~~~~~~~~~~~-~lLt~eeE~eL~~~iq~~~~le~~~~~------------------L~~~~gr~pt~~ewA~------ 277 (442)
+.++.|++.+++ ||||++||++|+++|+.+..++..... .....++.|+..+|+.
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 445678888886 999999999999999998665443221 1223567888888743
Q ss_pred ------HcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHH
Q 013472 278 ------AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351 (442)
Q Consensus 278 ------a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTY 351 (442)
+.+++..+|+..++.|..|+++||.+|+++|+++|++|.++|.+++|||||||||||+|+++|||.+|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 23556688888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhC--CCHHHHHHHHHhcccCCCCc
Q 013472 352 VQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVGSID 429 (442)
Q Consensus 352 a~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LG--IS~etVk~~l~~ar~~~SLD 429 (442)
++|||+|.|.++|+++.+.+++|.++.+.+++++++.+.+.+.+|+.|+.+|||+.+| +++++|..++..+..++|||
T Consensus 254 A~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd 333 (438)
T 1l9z_H 254 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 333 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999888999999
Q ss_pred cccCCCCC
Q 013472 430 QKIGDCLN 437 (442)
Q Consensus 430 ~~v~~~~d 437 (442)
.+++++++
T Consensus 334 ~~~~~d~d 341 (438)
T 1l9z_H 334 TPIGDEKD 341 (438)
T ss_pred cccccccc
Confidence 99876654
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=4.1e-36 Score=311.25 Aligned_cols=217 Identities=26% Similarity=0.416 Sum_probs=189.4
Q ss_pred hHHHHHHhcccCC-CCCChHHHHHHHHHhHHHHHHHHHHHHH------------------HHHhCCCCChHHHH------
Q 013472 222 IFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTL------------------EKESGKAASLNCWA------ 276 (442)
Q Consensus 222 ~~~~~~~~~~~~~-~lLt~eeE~eL~~~iq~~~~le~~~~~L------------------~~~~gr~pt~~ewA------ 276 (442)
.+.++.|++.+++ ||||++||++|+++|+.+..+....... ....++.|+..+|+
T Consensus 78 ~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (423)
T 2a6h_F 78 SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVE 157 (423)
T ss_dssp HHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHHH
T ss_pred CcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhhh
Confidence 4567778888875 9999999999999999986544322211 11234566655432
Q ss_pred ---H---HcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHH
Q 013472 277 ---Q---AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350 (442)
Q Consensus 277 ---~---a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFST 350 (442)
. +.++++.+|+..++.|..|+++||.+|+++|+++|++|.++|.+++|||||||||||+|+++|||.+|++|+|
T Consensus 158 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~Fst 237 (423)
T 2a6h_F 158 EIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 237 (423)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHHH
T ss_pred hhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHHH
Confidence 2 3466778899999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhC--CCHHHHHHHHHhcccCCCC
Q 013472 351 YVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECLRIVGSI 428 (442)
Q Consensus 351 Ya~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LG--IS~etVk~~l~~ar~~~SL 428 (442)
|++|||++.|.++|+++.+.+++|.|+.+.+++++++.+.+.+.+|+.|+.+|||+.+| +++++|..++..+..++||
T Consensus 238 Ya~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~Sl 317 (423)
T 2a6h_F 238 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 317 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCEES
T ss_pred HHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccccCCCCCc
Q 013472 429 DQKIGDCLNA 438 (442)
Q Consensus 429 D~~v~~~~d~ 438 (442)
|.|++++++.
T Consensus 318 d~~~~~~~~~ 327 (423)
T 2a6h_F 318 ETPIGDEKDS 327 (423)
T ss_dssp SCBCSSSSSC
T ss_pred ccccCCCCcc
Confidence 9999876543
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.92 E-value=3.1e-27 Score=254.66 Aligned_cols=176 Identities=27% Similarity=0.533 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHHHhchH-H---HHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHH
Q 013472 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY-C---REELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328 (442)
Q Consensus 253 ~~le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l~~G~~-A---re~LI~~nlrLV~sIAkrY~g~g~d~EDLIQE 328 (442)
..+++....++...|-.+ .+..+|+.+++.|+. | |+.||..|.++|+++|++|++++.+++||+||
T Consensus 338 ~~~q~kL~~ie~~~~~~~----------~~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE 407 (613)
T 3iyd_F 338 HRALQKLQQIEEETGLTI----------EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 (613)
T ss_dssp HHHHHHHHHHHHHHTSCT----------TTHHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHH
T ss_pred HHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 344444445555555432 235678899999976 6 99999999999999999999999999999999
Q ss_pred HHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHh
Q 013472 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYT 408 (442)
Q Consensus 329 G~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~L 408 (442)
||||||+++++||+.+|++|+||++|||+|+|+++++++.+.+++|.++.+.+++++++...+.+++|+.||.+|||+.|
T Consensus 408 ~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l 487 (613)
T 3iyd_F 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 (613)
T ss_dssp HHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTS
T ss_pred HHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcccCCCCccccCCCCCc
Q 013472 409 GLSLAEIRSASECLRIVGSIDQKIGDCLNA 438 (442)
Q Consensus 409 GIS~etVk~~l~~ar~~~SLD~~v~~~~d~ 438 (442)
||++++|+.++..++.++|||.+++++.+.
T Consensus 488 ~~~~~~v~~~~~~~~~~~sld~~~~~~~~~ 517 (613)
T 3iyd_F 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 (613)
T ss_dssp SCCSSHHHHHHHHSCCCCCSSCCCSSSSSC
T ss_pred CCCHHHHHHHHHhccCCcccCCCCCCCCCc
Confidence 999999999999999999999999876654
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.81 E-value=8.2e-21 Score=175.82 Aligned_cols=152 Identities=28% Similarity=0.413 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHH
Q 013472 282 SERVLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360 (442)
Q Consensus 282 deeeL~~~l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI 360 (442)
++.+|+..++.|+. |++.|+..|.++|+.+|++|.++..+++||+|||++++|+++++||+.+|.+|.||+++|++|.+
T Consensus 14 ~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~ 93 (243)
T 1l0o_C 14 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEI 93 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 45678889999976 99999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcccCCCCccccCC
Q 013472 361 SKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434 (442)
Q Consensus 361 ~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~~~SLD~~v~~ 434 (442)
.++++++. .+++|.++.....+++++...+....++.|+.++|++.+|++.+.+...+.....+.|+|.|+.+
T Consensus 94 ~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (243)
T 1l0o_C 94 QRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYE 166 (243)
T ss_dssp ------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------
T ss_pred HHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccc
Confidence 99999886 78899999999999999999999999999999999999999999999888777778888887543
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.77 E-value=4.7e-18 Score=157.52 Aligned_cols=135 Identities=21% Similarity=0.329 Sum_probs=120.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh---CCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCce
Q 013472 295 YCREELIKSTRPLVLFLARNYR---GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGI 371 (442)
Q Consensus 295 ~Are~LI~~nlrLV~sIAkrY~---g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~i 371 (442)
.|+++|+..|.++|+.+|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||+|.|+++++++.
T Consensus 12 ~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~--- 88 (239)
T 1rp3_A 12 IEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD--- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS---
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC---
Confidence 4899999999999999999998 6789999999999999999999999998889999999999999999999874
Q ss_pred ecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc--cCCCCcccc
Q 013472 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR--IVGSIDQKI 432 (442)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar--~~~SLD~~v 432 (442)
+.|........++.++...+....++.|+.+|||+.+|++++++..++.... .++|+|.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~ 151 (239)
T 1rp3_A 89 FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVF 151 (239)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccc
Confidence 4677777888899999999999999999999999999999999988765442 334666543
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.73 E-value=2.1e-17 Score=149.30 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=114.7
Q ss_pred CHHHHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHH
Q 013472 282 SERVLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360 (442)
Q Consensus 282 deeeL~~~l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI 360 (442)
++.+|+..++.|+. |++.|+..|.+.|+.+|++|.+ ..+++|++||+|+++|+++++|++.. .|.||++.+++|.+
T Consensus 9 ~~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~ 85 (194)
T 1or7_A 9 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 85 (194)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHH
Confidence 35778999999976 9999999999999999999999 99999999999999999999999864 59999999999999
Q ss_pred HHHHHhhcCceec----------------------ccc---cHHHHHHHHHHHHHHHHHc--------CCCCcHHHHHHH
Q 013472 361 SKMVARHARGIKI----------------------PCK---LNREISKIQKARKALTNSH--------GKYPEDIEIAKY 407 (442)
Q Consensus 361 ~r~LRkqsr~irl----------------------P~~---v~e~i~kI~ka~~~L~~el--------gr~PS~eEIAe~ 407 (442)
++++|++.+.... |.. ..+....+..+...|+... ..+.|++|||+.
T Consensus 86 ~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~ 165 (194)
T 1or7_A 86 KNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAI 165 (194)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhccCccccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHH
Confidence 9999987653211 111 0123344556666554432 478899999999
Q ss_pred hCCCHHHHHHHHHhccc
Q 013472 408 TGLSLAEIRSASECLRI 424 (442)
Q Consensus 408 LGIS~etVk~~l~~ar~ 424 (442)
||||+.+|+..+++++.
T Consensus 166 lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 166 MDCPVGTVRSRIFRARE 182 (194)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 8
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.72 E-value=1.7e-17 Score=166.24 Aligned_cols=86 Identities=34% Similarity=0.773 Sum_probs=80.4
Q ss_pred HHHHHHHHHhch----HHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHH
Q 013472 283 ERVLKQHLAFGW----YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358 (442)
Q Consensus 283 eeeL~~~l~~G~----~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRn 358 (442)
...|+.+++.|+ .|++.||..|.++|+++|++|++++.+++||+||||||||+++++|++.+|++|+||++|||+|
T Consensus 249 ~~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn 328 (339)
T 1sig_A 249 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 328 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHH
Confidence 356788888995 5999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHhhc
Q 013472 359 SISKMVARHA 368 (442)
Q Consensus 359 aI~r~LRkqs 368 (442)
.|++++|++.
T Consensus 329 ~~~~~lr~~~ 338 (339)
T 1sig_A 329 AITRSIADQA 338 (339)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.70 E-value=4e-18 Score=153.11 Aligned_cols=144 Identities=17% Similarity=0.066 Sum_probs=118.1
Q ss_pred CCCHHHHHHH-HHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHH
Q 013472 280 GVSERVLKQH-LAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357 (442)
Q Consensus 280 g~deeeL~~~-l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIR 357 (442)
.+++.+|+.. ++.|+. |++.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++++|++..| .|.+|++.+++
T Consensus 10 ~~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~ 88 (184)
T 2q1z_A 10 RTDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIAR 88 (184)
T ss_dssp TTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHH
Confidence 3678889999 999976 99999999999999999999999999999999999999999999998765 79999999999
Q ss_pred HHHHHHHHhhcCceecccc--------------cHHHHHHHHHHHHHHHHHc--------CCCCcHHHHHHHhCCCHHHH
Q 013472 358 KSISKMVARHARGIKIPCK--------------LNREISKIQKARKALTNSH--------GKYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 358 naI~r~LRkqsr~irlP~~--------------v~e~i~kI~ka~~~L~~el--------gr~PS~eEIAe~LGIS~etV 415 (442)
|.+++++|++.+...++.. ..+....+..+...|+... ..+.|++|||+.||||+.+|
T Consensus 89 n~~~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV 168 (184)
T 2q1z_A 89 NRRIDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTI 168 (184)
T ss_dssp TSCCTTTCSSSCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHH
T ss_pred HHHHHHHHhhcccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 9999999987654333211 1122334555555554332 36789999999999999999
Q ss_pred HHHHHhccc
Q 013472 416 RSASECLRI 424 (442)
Q Consensus 416 k~~l~~ar~ 424 (442)
+..+++++.
T Consensus 169 ~~~l~ra~~ 177 (184)
T 2q1z_A 169 KSRIRLALD 177 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.48 E-value=1.1e-13 Score=120.68 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=76.8
Q ss_pred CCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCceecc------------------------
Q 013472 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP------------------------ 374 (442)
Q Consensus 319 g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~irlP------------------------ 374 (442)
|.+++|++|||++++|+++++||+.+ .+|.||++++++|.+++++|++.+..+.+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 57899999999999999999999987 68999999999999999999875432211
Q ss_pred ----------cc---cHHHHHHHHHHHH-HHHH-------HcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 375 ----------CK---LNREISKIQKARK-ALTN-------SHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 375 ----------~~---v~e~i~kI~ka~~-~L~~-------elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.. ..+....+..++. .|+. .+-.+.|++|||+.||||+.+|+..+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 1122233444444 3332 3357889999999999999999999888764
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.44 E-value=1.1e-15 Score=136.41 Aligned_cols=125 Identities=7% Similarity=-0.032 Sum_probs=96.4
Q ss_pred HHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCceecccc
Q 013472 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCK 376 (442)
Q Consensus 297 re~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~irlP~~ 376 (442)
|+.|+..|.+.|+.+|++++++..+++|++||+|+++|+++++|++.. .|.+|++.+++|.+++++|+......-| .
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~~~~~~-e 79 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEAQTSQS-D 79 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSCCCCCC-S
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCcccCCc-c
Confidence 678899999999999999999999999999999999999999999753 6999999999999999998763211111 1
Q ss_pred cHHHHHHHHHHHHHHHH--------HcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 377 LNREISKIQKARKALTN--------SHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 377 v~e~i~kI~ka~~~L~~--------elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+....+..+...|+. .+-.+.|++|||+.||||+++|+..+.+++.
T Consensus 80 ~~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 80 AEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp CSSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 11111122222222222 1246789999999999999999999988873
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.41 E-value=8.5e-14 Score=136.08 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=99.0
Q ss_pred hchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCc
Q 013472 292 FGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARG 370 (442)
Q Consensus 292 ~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~ 370 (442)
.|+. +|++|+..|.+.++.+|++|+++..+++|++||.|+.+|+..++|++. ..|.||++++++|.+++++|+....
T Consensus 17 ~g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~~ 94 (286)
T 3n0r_A 17 RGSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEVG 94 (286)
T ss_dssp ---CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC----C
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccccC
Confidence 3444 899999999999999999999999999999999999999999999974 3699999999999999999864321
Q ss_pred eecccccHHHHHHHHHHHHHHHHHc--------CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 371 IKIPCKLNREISKIQKARKALTNSH--------GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 371 irlP~~v~e~i~kI~ka~~~L~~el--------gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.... .+....+.+++.+|+... -.+.|++|||+.+|+++++|+..+..++
T Consensus 95 ~~~~---~~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~ 152 (286)
T 3n0r_A 95 HDQG---LHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQ 152 (286)
T ss_dssp CCCC---CCTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcc---cchHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 1111 111233555555554433 4778999999999999999999887765
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.28 E-value=7.5e-12 Score=104.87 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=73.0
Q ss_pred HHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHH
Q 013472 285 VLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKM 363 (442)
Q Consensus 285 eL~~~l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~ 363 (442)
+|+..++.|+. |++.|+..|.+.|+.+|.++ ++..+++|++||+|+.+|+.+.+|++. ..|.+|++.+++|.++++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 67888889966 99999999999999999999 988999999999999999999999974 369999999999999999
Q ss_pred HHhhcCcee
Q 013472 364 VARHARGIK 372 (442)
Q Consensus 364 LRkqsr~ir 372 (442)
+|++.+...
T Consensus 90 ~R~~~~~~~ 98 (112)
T 2o7g_A 90 IRHVRSRPR 98 (112)
T ss_dssp TC-------
T ss_pred HHHhhcccc
Confidence 998765433
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.20 E-value=1.5e-11 Score=98.53 Aligned_cols=77 Identities=8% Similarity=-0.048 Sum_probs=68.4
Q ss_pred HHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Q 013472 290 LAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368 (442)
Q Consensus 290 l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqs 368 (442)
+..|+. |++.|+..|.+.|+.+|.++.++..++||++||+|+.+|+.+++|++. ..|.+|++.+++|.+++++|++.
T Consensus 6 ~~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 6 STAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 345654 999999999999999999999999999999999999999999999975 47999999999999999998764
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.66 E-value=1.1e-08 Score=98.17 Aligned_cols=138 Identities=7% Similarity=-0.085 Sum_probs=100.0
Q ss_pred HHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHH----HHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHH
Q 013472 285 VLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLL----QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359 (442)
Q Consensus 285 eL~~~l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLI----QEG~IGLirAieKFDp~kG~rFSTYa~~wIRna 359 (442)
.|..++..++. +.+.+...|.++|+.+............|+. ||.++.+|+.+..|++.. .|.+|++.+++|.
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 46667766655 8999999999999999998877888888996 999999999999998643 6999999999998
Q ss_pred HHHHHHhhcCceec----------ccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 360 ISKMVARHARGIKI----------PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 360 I~r~LRkqsr~irl----------P~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+.++.++......+ +..+......+..-.+++..-...+.|.+|||+.||||+++|+..+++++.
T Consensus 164 ~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 164 SADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp CSCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88876542111111 111111112222222222221236789999999999999999999988874
No 16
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=92.81 E-value=3.8 Score=36.74 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHH
Q 013472 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288 (442)
Q Consensus 254 ~le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~ 288 (442)
.+.+....+....|+.|+.++.|...|++.+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (239)
T 1rp3_A 100 RIKEVVEKLKEKLGREPTDEEVAKELGISTEELFK 134 (239)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHH
Confidence 45566777778889999999999999999877654
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=91.75 E-value=0.16 Score=40.59 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=26.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+..+.|++|||+.||||+.+|+..+++++.
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356789999999999999999999888764
No 18
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=91.73 E-value=2.3 Score=44.04 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.||||.++|+.+++++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlk 421 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALR 421 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999999877753
No 19
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.82 E-value=0.27 Score=40.85 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+.|.+|||+.||||.++|+..+..+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAl 64 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKAL 64 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578999999999999999999977664
No 20
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.48 E-value=0.44 Score=36.34 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+.....++...+..+.|..|||+.||+++.+|+..+..++.
T Consensus 17 L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33333443333467889999999999999999999887764
No 21
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=90.28 E-value=0.45 Score=35.75 Aligned_cols=28 Identities=14% Similarity=-0.054 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.||+|+.+|+..+..+..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6889999999999999999999887764
No 22
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=89.45 E-value=0.54 Score=35.81 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+.|.+|||+.||+|..+|+..+..+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 688999999999999999999877665
No 23
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=89.29 E-value=0.52 Score=37.32 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.||||+++|+..+.+++.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999887763
No 24
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.70 E-value=0.67 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.009 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|.+|||+.+|+|+.+|+..+++++.
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999999888764
No 25
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=88.00 E-value=0.2 Score=39.45 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=25.7
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|.+|||+.|||+..+|+..+.+++.
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46789999999999999999999887764
No 26
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=87.25 E-value=0.9 Score=30.57 Aligned_cols=26 Identities=15% Similarity=-0.132 Sum_probs=23.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.+..|||+.+||+..+|...+...+
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 56999999999999999999887654
No 27
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.88 E-value=1.1 Score=35.68 Aligned_cols=39 Identities=28% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHc-CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 384 IQKARKALTNSH-GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 384 I~ka~~~L~~el-gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
|-..+.....+. |..||..|||+.+|+|..+|+..+...
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444433333 788999999999999999999887654
No 28
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=86.30 E-value=0.36 Score=39.07 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=24.8
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+.|+.|||+.||||+.+|+..+.+++
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999988765
No 29
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.28 E-value=0.53 Score=34.18 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=24.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|..|||+.||+|+.+|+..+..+..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45679999999999999999998877653
No 30
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=84.15 E-value=1.4 Score=37.00 Aligned_cols=29 Identities=14% Similarity=-0.164 Sum_probs=25.8
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|+.|||+.||+|+.+|+..+++++.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGD 67 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999999887763
No 31
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=84.11 E-value=1.3 Score=31.54 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|..|||+.+|++..+|...+..
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 3569999999999999999988754
No 32
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=83.29 E-value=1.7 Score=32.37 Aligned_cols=28 Identities=18% Similarity=-0.035 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+.|..|||+.+|+|..+|+..+..++
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567999999999999999999988765
No 33
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=81.39 E-value=0.92 Score=36.06 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|..|||+.||||+.+|+..+.+++.
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999887764
No 34
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=80.89 E-value=1.8 Score=34.77 Aligned_cols=28 Identities=25% Similarity=0.040 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|+.|||+.|||++.+|+..+..+..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5779999999999999999999877654
No 35
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=79.87 E-value=1.9 Score=36.27 Aligned_cols=29 Identities=17% Similarity=0.003 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|+.|||+.+|+|+.+|+..+++++.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35779999999999999999999887763
No 36
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=79.10 E-value=3.5 Score=42.24 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+.|.+|||+.||||.++|+.++..+.
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl 405 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKAL 405 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 678999999999999999999877665
No 37
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=78.29 E-value=0.43 Score=43.03 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|.+|||+.||||+.+|+..+++++.
T Consensus 212 ~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 212 YKDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp -----------------------------
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45679999999999999999999988765
No 38
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=77.37 E-value=4.3 Score=36.62 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...++-..+.++..+.|..||..|||+.+|++..+|...+...
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 3456666777777778999999999999999999998887644
No 39
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=77.05 E-value=1.9 Score=35.49 Aligned_cols=27 Identities=26% Similarity=0.067 Sum_probs=23.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+.+.+|||+.|||++.+|+..+..+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 669999999999999999998877653
No 40
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=70.27 E-value=9.1 Score=30.69 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.|.++...+...+...++.++||+.+|||...+....+.
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 355666667777777899999999999999999887654
No 41
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=69.79 E-value=5 Score=36.92 Aligned_cols=29 Identities=17% Similarity=0.035 Sum_probs=25.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.|.+|||+.||||+.+|+..+..++.
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45789999999999999999999887764
No 42
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=67.75 E-value=8.1 Score=29.14 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=24.7
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+...+..|||+.+|+|..+|...+...+
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45567999999999999999999987654
No 43
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=66.31 E-value=11 Score=30.26 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 383 KIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 383 kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.|.++...+.+.+. ..++.++||+.+|+|...+....+.
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666677777777 7899999999999999999887653
No 44
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=66.01 E-value=5.3 Score=36.81 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.||||+.+|+..+..++.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999887764
No 45
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=65.19 E-value=12 Score=29.98 Aligned_cols=39 Identities=8% Similarity=-0.076 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.++...+...+...++.++||+.+|||...+....+.
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355566666666777899999999999999999887543
No 46
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=64.51 E-value=9.4 Score=30.95 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.|.++...+...+...++.++||+.+||+...+....+.
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 456666666666677899999999999999999887654
No 47
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=64.43 E-value=15 Score=29.18 Aligned_cols=38 Identities=8% Similarity=-0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCC-CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 384 IQKARKALTNSHGK-YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 384 I~ka~~~L~~elgr-~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+.++..-+.+.+.. .++.++||+.+|+|+.++....+.
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444445555555 789999999999999999877553
No 48
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.33 E-value=4.7 Score=27.35 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=21.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+.|..|||+.+|++..+|...+...
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3799999999999999999887543
No 49
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=62.09 E-value=6.7 Score=36.38 Aligned_cols=28 Identities=7% Similarity=-0.198 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.||||+.+|+..+..+..
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999887664
No 50
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=60.72 E-value=17 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
|...|..|||+.||++..+|...+....
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567999999999999999999987654
No 51
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=59.79 E-value=7.4 Score=36.02 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.||||..+|-.++..|+-
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~A~~ 50 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQAASA 50 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHhcc
Confidence 4589999999999999999999998873
No 52
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=58.56 E-value=21 Score=26.79 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+....+.+..+ .+.|..|+|+.+|++..+|..+.+-
T Consensus 12 ~l~~~l~~~r~~--~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 12 RLKAIWEKKKNE--LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHHHHHHHHHHH--HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 344444444443 3569999999999999999988753
No 53
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=57.53 E-value=18 Score=32.32 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCC-HHHHHHHHH
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLS-LAEIRSASE 420 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS-~etVk~~l~ 420 (442)
.+...++++..+.|..||..|||+.+|++ ..+|...+.
T Consensus 10 ~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 10 EVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 34445555555668778999999999999 899887765
No 54
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=55.15 E-value=10 Score=35.98 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|..|||+.||||+.+|+..+..++.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~ 238 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIR 238 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4679999999999999999999887664
No 55
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=54.67 E-value=18 Score=28.18 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
...|..|||+.||++..+|...+....
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467999999999999999999887653
No 56
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=53.79 E-value=10 Score=31.61 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=26.6
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+-.+.|..|||+.||||..+|..++..++.
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355779999999999999999999998875
No 57
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=52.71 E-value=13 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=22.1
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.|..|||+.||||..+|+..+...
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 899999999999999999987754
No 58
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=52.54 E-value=18 Score=29.58 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+.++...+...+...++.++||+.+||+...+....+.
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44555555556667889999999999999999887654
No 59
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=52.31 E-value=12 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.7
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+|..|||+.+|+|..+|-.+++-..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 4789999999999999999997543
No 60
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=51.50 E-value=31 Score=26.32 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
...++....+.+..+. +.|.+++|+.+|++..+|..+..-
T Consensus 14 ~~~~l~~~l~~~R~~~--glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 14 DARRLKAIYEKKKNEL--GLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHHHHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3445566665555544 469999999999999999887653
No 61
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=50.90 E-value=22 Score=27.15 Aligned_cols=26 Identities=19% Similarity=0.003 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+|..|||+.+|+|..+|...+...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35899999999999999999987654
No 62
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=49.57 E-value=74 Score=27.75 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcC----------CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 382 SKIQKARKALTNSHG----------KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 382 ~kI~ka~~~L~~elg----------r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.++......+....| ...|.++||..+|++.++|-.+++..+
T Consensus 141 ~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 141 LRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 445555555555444 356999999999999999999887654
No 63
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=49.42 E-value=18 Score=30.03 Aligned_cols=40 Identities=8% Similarity=-0.017 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 382 ~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
..+.++...+...+...++.++||+.+|++...+....+.
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3456666666666677899999999999999999877553
No 64
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=49.23 E-value=64 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|...+...
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46799999999999999999887644
No 65
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=49.19 E-value=44 Score=29.04 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=23.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56999999999999999999887654
No 66
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=48.14 E-value=22 Score=29.65 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~ 418 (442)
+.|+.|||+.||+|..+|-.+
T Consensus 58 e~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHH
Confidence 489999999999999998776
No 67
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=47.96 E-value=46 Score=26.43 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=26.0
Q ss_pred hhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHH
Q 013472 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355 (442)
Q Consensus 315 Y~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~w 355 (442)
........+||.+.-.+.--.--..|...-|..|..|+..+
T Consensus 17 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~ 57 (108)
T 3oou_A 17 HFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRY 57 (108)
T ss_dssp HTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 33456888888888666655555556555566666666443
No 68
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=47.23 E-value=27 Score=32.27 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcccCCCC
Q 013472 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428 (442)
Q Consensus 374 P~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~~~SL 428 (442)
|...++.-....++... |...+..+||+.+|||...|-.++..++-|..|
T Consensus 23 plS~yErg~~y~r~L~~-----g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP~~l 72 (189)
T 3mky_B 23 PTSAYERGQRYASRLQN-----EFAGNISALADAENISRKIITRCINTAKLPKSV 72 (189)
T ss_dssp CCCHHHHHHHHHHHHHT-----TTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHHHHhc-----CcccCHHHHHHHHCCCHHHHHHHHHHhcCCHHH
Confidence 44455554444444332 667899999999999999999999998865443
No 69
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=46.78 E-value=51 Score=26.42 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=32.6
Q ss_pred HHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHH
Q 013472 311 LARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (442)
Q Consensus 311 IAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~L 364 (442)
+...........+||.+.-.+.--.--..|...-|..|..|+..+--+.....|
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL 68 (113)
T 3oio_A 15 LMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLL 68 (113)
T ss_dssp HHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 334444456888998888766655555566655566677776654443333333
No 70
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=46.47 E-value=56 Score=23.44 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+....+.+... .+.|..++|+.+|++..+|..+..-
T Consensus 14 ~~~~l~~~r~~--~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 14 FGQRLRELRTA--KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 33334444433 3579999999999999999887653
No 71
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=45.74 E-value=35 Score=26.74 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
...+..|||+.+|+|+.+|+.-+..
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 3579999999999999999987653
No 72
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=45.27 E-value=51 Score=24.98 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+...++.+.. ..+.|..|+|+.+|++..+|..+.+-
T Consensus 19 ~~~~l~~~r~--~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 19 LLIVLQEHLR--NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp HHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3334444433 34679999999999999999988753
No 73
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=44.94 E-value=40 Score=28.88 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.|-..|.++||+..|++..++...
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~ 52 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRH 52 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHH
Confidence 445677777788888787899999999999999999754
No 74
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=44.15 E-value=18 Score=29.79 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
-||..|||+.+|+|..+|+.++...
T Consensus 33 lPs~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 33 IPSIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999997754
No 75
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=44.01 E-value=56 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=19.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|.+|+|+.+|++..+|..+..
T Consensus 27 gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 46899999999999999988765
No 76
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=43.79 E-value=63 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|..++|+.+|++..+|..+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 357899999999999999988765
No 77
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=43.75 E-value=53 Score=29.51 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLK 202 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 45999999999999999999887654
No 78
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.48 E-value=40 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|..++|+.+|++..+|..+..-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3568999999999999999887653
No 79
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=43.43 E-value=9.1 Score=40.94 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|++|||+.||||.++|+.+++++..
T Consensus 569 e~~s~~EIA~~lgis~~tVk~~~~rAl~ 596 (613)
T 3iyd_F 569 TDHTLEEVGKQFDVTRERIRQIEAKALR 596 (613)
T ss_dssp CCCSTTGGGTTTSSCSSHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999888765
No 80
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=43.39 E-value=29 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=21.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHh
Q 013472 399 PEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+|..+||+.+|+|..+|...+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998864
No 81
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=43.36 E-value=18 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..++|+.+|+|..+|+.++...
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 45799999999999999999997754
No 82
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=43.30 E-value=53 Score=27.15 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 373 IPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 373 lP~~v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+.....+...+|..+..+|..+.| ...|..+||+..|++.+++...
T Consensus 2 M~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 2 MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHH
No 83
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=42.85 E-value=17 Score=28.04 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...|.+|.|+.+||+..++..+.+..
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHcC
Confidence 44599999999999999999998763
No 84
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.46 E-value=59 Score=26.22 Aligned_cols=66 Identities=8% Similarity=0.085 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 348 FSTYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.-.|+.+.+.+.+.+.+.+.-....++......+ ..+.. ....+..|||+.+|++..+|...+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL-------~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 7 PLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVL-------CSIRC--AACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHH-------HHHHH--HSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHH-------HHHHh--cCCCCHHHHHHHHCCChHHHHHHHHHH
Confidence 3456666677777776665433222322211111 12221 125699999999999999999887654
No 85
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=42.09 E-value=44 Score=29.54 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=30.2
Q ss_pred HHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcccCCCC
Q 013472 390 ALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428 (442)
Q Consensus 390 ~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~~~SL 428 (442)
++...+..+.+.+|||+.++++..+|+..+...+.-+..
T Consensus 166 ~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 166 QIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 333344567899999999999999999998877764443
No 86
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=41.91 E-value=67 Score=23.82 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+...++.+... ++.|.+++|+.+|++..+|..+.+
T Consensus 12 ~g~~lk~~R~~--~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 12 VSFVIKKIRLE--KGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 33344444433 457999999999999999988764
No 87
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=41.44 E-value=53 Score=26.69 Aligned_cols=53 Identities=4% Similarity=-0.018 Sum_probs=31.2
Q ss_pred HHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHH
Q 013472 311 LARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (442)
Q Consensus 311 IAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~L 364 (442)
+...........+||.+...+.--.--..|... |..|..|+..+-.+.....|
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL 67 (120)
T 3mkl_A 15 VINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLI 67 (120)
T ss_dssp HHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 333333456788888887666655555556554 66777776654444444444
No 88
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=41.23 E-value=51 Score=30.49 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHH
Q 013472 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288 (442)
Q Consensus 255 le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~ 288 (442)
+.++..-++..+...++.+++|+.+|++...|.+
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r 38 (292)
T 1d5y_A 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQR 38 (292)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 3445555666667788888888888888777655
No 89
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=40.94 E-value=18 Score=28.99 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.7
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|..+|..|||+.+|++..+|..++....
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36568999999999999999999977543
No 90
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=40.75 E-value=41 Score=25.13 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=19.8
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhc
Q 013472 400 EDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~a 422 (442)
|..++|+.+||+..+|..+..--
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHCC
Confidence 88999999999999998887643
No 91
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=40.65 E-value=88 Score=22.24 Aligned_cols=25 Identities=4% Similarity=-0.154 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHhC--CCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTG--LSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LG--IS~etVk~~l~~ 421 (442)
++.|.+|+|+.+| ++..+|..+..-
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 4579999999999 999999887653
No 92
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=40.47 E-value=47 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|..++|+.+|++..+|..+..-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3568999999999999999888753
No 93
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=40.45 E-value=18 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.|+..|||+.+|+|..+|+.++....
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999999999999987543
No 94
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=40.42 E-value=52 Score=27.95 Aligned_cols=41 Identities=24% Similarity=0.051 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..+|..+.| ...|.++||+..||+..++...
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~ 52 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW 52 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHH
Confidence 3455677788888877777 6789999999999999999654
No 95
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=40.23 E-value=1.3e+02 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+...+..|||+.+|++..+|..++...
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 446799999999999999999887644
No 96
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=40.20 E-value=86 Score=25.52 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 349 STYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
-.|..+.+.+.+.+.+.+.-....++.... .+- ..|... ...+..|||+.+|++..+|-..+...
T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~~lt~~~~----~iL---~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 11 ISFDVNTTAKKMHLFLMRSIASYDVTPEQW----SVL---EGIEAN--EPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCHHHH----HHH---HHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHH----HHH---HHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 345555666666666665433222322111 111 122221 35699999999999999998886644
No 97
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=40.16 E-value=75 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.+.|..|+|+.+|++..+|..+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 357899999999999999988765
No 98
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=40.12 E-value=45 Score=28.30 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-.+..++..+.|-..|..+||+..||+.+++...
T Consensus 17 r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~ 54 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRN 54 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHH
Confidence 45677777777777786699999999999999999754
No 99
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=39.95 E-value=73 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|..++...
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46799999999999999999887644
No 100
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=39.76 E-value=50 Score=27.80 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
.+...+|-.+..++..+.| ...|.++||+..|++..++..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHH
Confidence 3455677777777777777 578999999999999999854
No 101
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=39.70 E-value=17 Score=30.61 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..||..+||+.+|++..+|..++...
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44999999999999999999998754
No 102
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=39.31 E-value=58 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..++..+.| ...|..+||+..|++.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 14 ETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhh
Confidence 345667777777777777 5689999999999999998764
No 103
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=39.27 E-value=58 Score=27.92 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc--cCCCCcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR--IVGSIDQ 430 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar--~~~SLD~ 430 (442)
..||.++||+.+|+++.+|...+...- ..+++..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 669999999999999999999987543 4556643
No 104
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=39.25 E-value=23 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..|||+.+|+|..+|+.++...
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999997754
No 105
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=39.23 E-value=57 Score=27.86 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~y 49 (204)
T 3anp_C 8 KRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNY 49 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHH
No 106
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=39.14 E-value=56 Score=27.70 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 14 AKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHH
Confidence 455667777777777777 5789999999999999999754
No 107
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=39.10 E-value=52 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...|..|||+.+|+|..+|...++..
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34799999999999999999987754
No 108
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=38.98 E-value=42 Score=29.55 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 45999999999999999999987654
No 109
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.95 E-value=67 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|..++|+.+|++..+|..+..
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 357999999999999999988765
No 110
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=38.92 E-value=71 Score=25.35 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+...++.+..+ ++.|.+|+|+.+||+..+|..+.+-
T Consensus 28 ~ig~~lr~~R~~--~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 28 KVSFVIKKIRLE--KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 444444554443 4569999999999999999887653
No 111
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=38.91 E-value=38 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.7
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.+..|||+.+|+|..+|...++..
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 599999999999999999987754
No 112
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=38.86 E-value=23 Score=29.77 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-|+..+||+.+|+|..+|+.++...
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34799999999999999999997754
No 113
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=38.81 E-value=47 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHh
Confidence 445667777777777777 5689999999999999998764
No 114
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=38.68 E-value=60 Score=27.32 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHH
Confidence 4455677777788777778 5789999999999999998754
No 115
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=38.65 E-value=30 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|..++|+.+|++..+|..+..-
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3578999999999999999887653
No 116
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=38.45 E-value=19 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|..|+|+.||||..++........
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 4788999999999999998876544
No 117
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=38.38 E-value=42 Score=28.53 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.|-..|.++||+..||+..++...
T Consensus 16 ~~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 16 RNYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHH
Confidence 3445677777777776666789999999999999998654
No 118
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=38.27 E-value=1.8e+02 Score=24.42 Aligned_cols=76 Identities=13% Similarity=-0.027 Sum_probs=52.3
Q ss_pred hC-CCCChHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHh-HHhcC
Q 013472 266 SG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG-AERFD 341 (442)
Q Consensus 266 ~g-r~pt~~ewA~a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirA-ieKFD 341 (442)
.| ...|..+.|+.+|++...+-.-...-+.-+..++..+...+..........+.+..+.+...+..++.. +...+
T Consensus 30 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 30 KGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred cCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 36 578999999999999988887766556666677777766666666655555677777777776666666 44433
No 119
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=38.24 E-value=49 Score=27.44 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|.++||+..|++.+++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHH
No 120
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=38.23 E-value=49 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=17.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|.+++|+.+||+..+|..+..
T Consensus 15 glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 46788888888888888877654
No 121
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.20 E-value=27 Score=30.89 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+..|||+.+|+|..+|...++...
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999876543
No 122
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=38.19 E-value=36 Score=32.14 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=27.2
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|+.|+..++|+.+|+++++|+.++....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 69999999999999999999999998765
No 123
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=38.18 E-value=50 Score=27.27 Aligned_cols=22 Identities=5% Similarity=0.178 Sum_probs=12.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSAS 419 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l 419 (442)
+.|.+|+|+.+||+...|..+-
T Consensus 20 glSq~eLA~~~gis~~~is~iE 41 (112)
T 2wus_R 20 RITLLDASLFTNINPSKLKRIE 41 (112)
T ss_dssp TCCHHHHHHHSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 4455566666666655555543
No 124
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=38.13 E-value=35 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~ 43 (190)
T 3vpr_A 5 RDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHH 43 (190)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 3456667777777777 5679999999999999998653
No 125
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=38.11 E-value=92 Score=27.29 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46999999999999999999887654
No 126
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=38.03 E-value=51 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
...+|-.+..++..+.| ...|.++||+..|++.+++..
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 8 TRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 34566777777777777 668999999999999999864
No 127
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=38.02 E-value=51 Score=28.15 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..++..+.| ...|..+||+..||+.+++...
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 12 EKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHH
Confidence 345567777777777777 5789999999999999998653
No 128
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=37.96 E-value=1.2e+02 Score=24.42 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|..++...
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 5699999999999999999887654
No 129
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=37.91 E-value=36 Score=29.37 Aligned_cols=26 Identities=23% Similarity=0.081 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36999999999999999998877654
No 130
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=37.90 E-value=40 Score=28.06 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred ecccccHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 372 KIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+....+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 3 ~m~~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 3 AMPMNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhc
No 131
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=37.84 E-value=55 Score=27.72 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 374 PCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 374 P~~v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+....+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 11 ~~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 11 NLETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHh
No 132
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=37.82 E-value=61 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHH
No 133
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=37.69 E-value=58 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
++.|..++|+.+|++..+|..+..-
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3578999999999999999887653
No 134
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.65 E-value=63 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+.|..++|+.+|++..+|..+..-
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 468999999999999999887653
No 135
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=37.60 E-value=37 Score=28.10 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
....+|..+..+|..+.| ...|..+||+..||+.+++..
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 345567777777777777 578999999999999999853
No 136
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=37.56 E-value=72 Score=25.79 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|-.++...
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 46799999999999999999887644
No 137
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=37.32 E-value=63 Score=27.09 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
....+|..+..+|..+.| ...|..+||+..|++.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 14 VREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
No 138
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=37.18 E-value=62 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.040 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..++..|||+.+|+|...|..++...+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~ 51 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR 51 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999876544
No 139
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=37.16 E-value=66 Score=27.24 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHh
Confidence 3455677778788877777 6789999999999999999764
No 140
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.15 E-value=38 Score=26.89 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.+..+||+.+|++..+|...+...+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899999999999999999887643
No 141
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=37.01 E-value=66 Score=27.32 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|..+||+..||+..++...
T Consensus 31 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 71 (218)
T 3dcf_A 31 DRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYY 71 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHH
No 142
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=37.01 E-value=26 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+-||..+||+.+|+|..+|+.++....
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~ 53 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLV 53 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456999999999999999999987543
No 143
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=36.88 E-value=62 Score=28.35 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46999999999999999999887654
No 144
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=36.82 E-value=51 Score=27.55 Aligned_cols=38 Identities=24% Similarity=0.143 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-++..+|..+.| ...|.++||+..|++.+++...
T Consensus 4 r~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 4 KERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHH
Confidence 3456677777777777 5689999999999999998654
No 145
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.74 E-value=74 Score=26.22 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 349 STYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
-.|..+.+.+.+.+.+.+.-....++.. .. .+ ...|. ..+...|..|||+.+|++..+|-.++...
T Consensus 13 l~~~l~~~~~~~~~~~~~~l~~~glt~~---q~-~v---L~~l~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 13 IGFLLSRVGGMVLGAVNKALVPTGLRVR---SY-SV---LVLAC-EQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCHH---HH-HH---HHHHH-HSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH---HH-HH---HHHHH-hCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 3455556666666666543222222211 11 11 11222 22334599999999999999999887644
No 146
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=36.73 E-value=63 Score=27.81 Aligned_cols=40 Identities=28% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|.++||+..||+..++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~ 52 (211)
T 3bhq_A 12 RKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKH 52 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 344567777777777777 5689999999999999998654
No 147
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.71 E-value=64 Score=26.74 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|..+..++..+.| ...|..+||+..|++..++...
T Consensus 11 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 49 (195)
T 3ppb_A 11 KQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHH 49 (195)
T ss_dssp HHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHH
Confidence 4567777777777777 6789999999999999998764
No 148
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=36.51 E-value=59 Score=27.42 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|+|..+|...++..
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34799999999999999999987654
No 149
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=36.45 E-value=39 Score=27.90 Aligned_cols=40 Identities=20% Similarity=0.005 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 445677777778877777 4689999999999999999764
No 150
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=36.41 E-value=53 Score=27.58 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..++..+.| ...|.++||+..|++..++...
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHH
Confidence 4556677778888877777 5689999999999999999764
No 151
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=36.41 E-value=50 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 4466778888888888888 4689999999999999999764
No 152
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=36.38 E-value=97 Score=25.51 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 348 FSTYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.-.|..+.+.+.+.+.+.+.-....++.... .| ...|.. ....+..|||+.+|++..+|..++...
T Consensus 20 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~----~i---L~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 20 QLSFALYSANLAMHKLYRGLLKALDLTYPQY----LV---MLVLWE--TDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTTCCHHHH----HH---HHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HH---HHHHHh--CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 3446666666667766665432222222111 11 122222 235799999999999999999887644
No 153
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.25 E-value=58 Score=27.93 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..|..|||+.+|+|..+|...+...
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999987654
No 154
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=36.24 E-value=64 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 10 ~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 10 KTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 345567777777777778 5789999999999999999654
No 155
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=36.17 E-value=54 Score=28.12 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
...+|-.+..+|..+.| ...|.++||+..||+.+++..
T Consensus 13 ~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~ 51 (205)
T 1rkt_A 13 RQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYL 51 (205)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhh
Confidence 34567777777777777 578999999999999999854
No 156
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=35.87 E-value=74 Score=22.55 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=23.8
Q ss_pred CCCCcHHHHHHHh-----CCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYT-----GLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~L-----GIS~etVk~~l~~a 422 (442)
+..+|.+||++.+ +++..+|...+...
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4578999999999 99999999988744
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=35.84 E-value=44 Score=27.26 Aligned_cols=26 Identities=15% Similarity=-0.132 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.+..+||+.+|++..+|...+....
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHccc
Confidence 46999999999999999999987654
No 158
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=35.82 E-value=94 Score=24.99 Aligned_cols=26 Identities=4% Similarity=-0.070 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|..++...
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 36799999999999999999887654
No 159
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=35.74 E-value=49 Score=28.42 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.+.|+.|||+.+|+|..+|....++.
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKRSL 99 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35899999999999999998765543
No 160
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.71 E-value=41 Score=27.09 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|+|+.+|+..+...
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999886643
No 161
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.70 E-value=58 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=19.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|..++|+.+|++..+|..+..
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 46889999999999999988764
No 162
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=35.66 E-value=27 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+....+.+++..|.. +...|..+||..||++-..|..++....
T Consensus 12 ~~~~~v~~~i~~L~~--~~~~Ta~~IAkkLg~sK~~vNr~LY~L~ 54 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNT--NDYTTAISLSNRLKINKKKINQQLYKLQ 54 (75)
T ss_dssp HHHHHHHHHHHTSCT--TCEECHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CcchHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566666665542 3336999999999999999999877543
No 163
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=35.60 E-value=51 Score=25.79 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCChHHHHHHcCCCHHHHH
Q 013472 257 RIKTTLEKESGKAASLNCWAQAAGVSERVLK 287 (442)
Q Consensus 257 ~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~ 287 (442)
-++..+++..|.+||..|.|++.|++.....
T Consensus 12 ~I~~~i~~~~g~~psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 12 IVQERQNMDDGAPVKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHHTCCHHHHH
T ss_pred HHHHHHhhccCCCcCHHHHHHHHCCCHHHHH
Confidence 3444555546899999999999999875543
No 164
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=35.32 E-value=68 Score=27.42 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~ 54 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHH 54 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHh
No 165
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=35.28 E-value=1.5e+02 Score=23.68 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 349 STYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
-.|..+.+.+.+.+.+.+.-.. .++... ..+- ..|.. .+ ..+..|||+.+|++..+|...+...
T Consensus 13 l~~~l~~~~~~~~~~~~~~~~~-~l~~~~----~~iL---~~l~~-~~-~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 13 IGFILRQANQRYAALFANGIGN-GLTPTQ----WAAL---VRLGE-TG-PCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS-CCCHHH----HHHH---HHHHH-HS-SBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHH----HHHH---HHHHH-cC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666666666654332 222211 1111 12221 23 6799999999999999999887654
No 166
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=35.21 E-value=54 Score=28.21 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 35899999999999999999987654
No 167
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=35.12 E-value=55 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+. ...|.++||+..|++..++...
T Consensus 14 ~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~Y~~ 52 (190)
T 2v57_A 14 RTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTVHRY 52 (190)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHH
Confidence 34556777777777766 8899999999999999998764
No 168
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=35.02 E-value=30 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
++.|.+|+|+.+||+..+|..+..-
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3578999999999999999887754
No 169
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=34.98 E-value=68 Score=28.09 Aligned_cols=25 Identities=28% Similarity=0.115 Sum_probs=22.1
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|.++||..+|++.++|-.++...+
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~ 188 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLI 188 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6999999999999999998877554
No 170
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=34.97 E-value=67 Score=27.51 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=0.0
Q ss_pred ccc---cHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 374 PCK---LNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 374 P~~---v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
|.. ..+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 22 ~~~~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 22 PRGAPDASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp -----CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred chhhhchhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhh
No 171
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=34.94 E-value=59 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|..|+|+.+||+..+|..+..
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 457888999999999888877654
No 172
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=34.89 E-value=91 Score=25.46 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|...+...
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 5799999999999999999887654
No 173
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=34.73 E-value=47 Score=28.64 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+.+.+|||+.+|++..+|+..+...+.
T Consensus 155 ~~g~s~~~Ia~~l~is~~TV~~~~~~i~~ 183 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQ 183 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44679999999999999999988776654
No 174
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=34.72 E-value=14 Score=29.50 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+-|+..|||+.+|+|..+|+.++....
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446999999999999999999976543
No 175
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=34.67 E-value=56 Score=30.25 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=38.7
Q ss_pred ecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.+|..+...+...-+....|..+--...|-.|||+.+|++..+|+.-+.+.
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~f 57 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYF 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 467777777777778888887764456799999999999999999887765
No 176
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=34.66 E-value=56 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (206)
T 3dew_A 9 CRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYH 48 (206)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHH
Confidence 34567777777777777 5889999999999999999764
No 177
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=34.63 E-value=37 Score=28.28 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred ecccccHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 372 KIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
+.+....+...+|-.+..++..+.| ...|..+||+..|++.+++
T Consensus 3 ~m~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (196)
T 3col_A 3 AMKKKDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNV 47 (196)
T ss_dssp -------CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHH
No 178
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=34.57 E-value=72 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2wui_A 11 KTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 345667777777777777 5689999999999999999764
No 179
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.52 E-value=69 Score=25.33 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHHHh
Q 013472 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292 (442)
Q Consensus 255 le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l~~ 292 (442)
++++..-+.......++.+++|+.+|++...|.+.++.
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34555566677788899999999999999988877664
No 180
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=34.48 E-value=77 Score=28.07 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+....|. +.++..|..|||+.+|+|..+|...+...+
T Consensus 23 ~~~Il~~L~-~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 23 LKSIVRILE-RSKEPVSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp HHHHHHHHH-HCSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444443 335568999999999999999998876443
No 181
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=34.32 E-value=59 Score=27.77 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
+...+|-.+..++..+.| ...|.++||+..|++..++..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~ 50 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSR 50 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHH
Confidence 345567777777777777 678999999999999999854
No 182
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=34.19 E-value=38 Score=29.53 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..++|.+|||+.++++..+|+..+...+.
T Consensus 167 ~~g~s~~~Ia~~l~is~~TV~~hi~~i~~ 195 (215)
T 1a04_A 167 AQGLPNKMIARRLDITESTVKVHVKHMLK 195 (215)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34579999999999999999988776553
No 183
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.14 E-value=45 Score=25.23 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHh-----CCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYT-----GLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~L-----GIS~etVk~~l~~ar 423 (442)
..+|.+||++.+ +++..+|...+....
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 578999999999 999999998877543
No 184
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=34.03 E-value=64 Score=24.19 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.4
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 013472 400 EDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~ 420 (442)
|..|+|+.+||+..+|..+.+
T Consensus 29 sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHc
Confidence 888888888888888887765
No 185
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=33.85 E-value=56 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 10 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 10 DKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHH
Confidence 356666666666667 5789999999999999999754
No 186
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=33.73 E-value=78 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|.++||+..|++..++...
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 187
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=33.45 E-value=78 Score=27.80 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred CceecccccHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 369 RGIKIPCKLNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 369 r~irlP~~v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+..+......+...+|..+..+|..+.| ...|..+||+..||+.+++...
T Consensus 33 r~~~~~~r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~ 83 (229)
T 3bni_A 33 RRAPVQRRSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRF 83 (229)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHH
No 188
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=33.37 E-value=96 Score=27.74 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 45999999999999999999987654
No 189
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=33.27 E-value=69 Score=27.47 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
.....+|-++..++..+.| ...|.++||+..|++.+++..
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~ 53 (199)
T 3crj_A 13 SDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHY 53 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhh
Confidence 3445667777777777777 678999999999999999854
No 190
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=33.25 E-value=79 Score=26.90 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 11 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 11 RRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHh
Confidence 34567777777777777 5689999999999999998654
No 191
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=33.08 E-value=98 Score=26.87 Aligned_cols=26 Identities=8% Similarity=-0.095 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 203 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLG 203 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45889999999999999999887654
No 192
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.01 E-value=51 Score=29.19 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHH
Q 013472 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 381 i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~ 417 (442)
..+|-.+..+|..+.| ..|..+||+.+|++..++..
T Consensus 13 r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 13 RERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp HHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHH
Confidence 4567777778888889 99999999999999999864
No 193
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=32.96 E-value=21 Score=27.05 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+|..+||+.+|++..+|-.+++-
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 479999999999999999887764
No 194
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=32.92 E-value=67 Score=27.28 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|.++||+..|++..++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 8 KRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHH
Confidence 345567777777777777 5679999999999999999764
No 195
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=32.91 E-value=64 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|..+||+..||+..++...
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 445677777777777777 5789999999999999999654
No 196
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=32.71 E-value=69 Score=28.10 Aligned_cols=25 Identities=12% Similarity=-0.089 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..|..|||+.+|+|..+|...+...
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999987754
No 197
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.62 E-value=74 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.|...|.++||+..|++..++...
T Consensus 21 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~ 59 (215)
T 2hku_A 21 TRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYY 59 (215)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHH
No 198
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=32.40 E-value=75 Score=26.85 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|+|..+|...++..
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999887654
No 199
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=32.31 E-value=55 Score=30.20 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=37.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 373 IPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 373 lP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+|..+...+...-+....|..+--...|-+|||+.+|++..+|+.-+.+.
T Consensus 3 i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 3 VPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 45555555555666667776664455799999999999999999887765
No 200
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=32.05 E-value=69 Score=27.42 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
...+|-.+..++..+.| ...|.++||+..|++..++..
T Consensus 10 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~ 48 (203)
T 3cdl_A 10 KRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYN 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 34566677777777777 578999999999999999864
No 201
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=32.02 E-value=44 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.031 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
++.|..++|+.+|++..+|..+..-
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3579999999999999999887653
No 202
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=31.94 E-value=1.5e+02 Score=24.61 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 348 FSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 348 FSTYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.-.|....+.+.+.+.+.+.-....+.......+..| .. ....+..|||+.+|++..+|..++...
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l-------~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRL-------YR--EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHH-------HH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4556666666666666665433333433333222222 11 245699999999999999999886643
No 203
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=31.74 E-value=98 Score=26.36 Aligned_cols=66 Identities=8% Similarity=0.046 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 349 STYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 349 STYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
-.|..+.+.+.+.+.+.+.-....+..... . +...|. ..+...+..|||+.+|++..+|-..+...
T Consensus 27 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~----~---vL~~L~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 27 LGSDLARLVRIWRALIDHRLKPLELTQTHW----V---TLHNIH-QLPPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHH----H---HHHHHH-HSCSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHH----H---HHHHHH-HcCCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 445566666667776665433222222111 1 112222 12445799999999999999999886643
No 204
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=31.56 E-value=36 Score=25.26 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=23.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcccC
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRIV 425 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~~ 425 (442)
-.+..|+|+.||++..++....+...-|
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~fP 37 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLP 37 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCC
Confidence 4588999999999999999998766543
No 205
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=31.42 E-value=98 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHH
Q 013472 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419 (442)
Q Consensus 382 ~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l 419 (442)
..|-+.++.+..+ ++.|.+|+|+.+|++..+|..+-
T Consensus 35 ~~lG~~ir~~R~~--~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 35 EEIGDRLKQARLN--RDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HHHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHcCCCHHHHHHHH
Confidence 3444444454443 46799999999999999998874
No 206
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=31.42 E-value=69 Score=27.82 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.5
Q ss_pred cHHHHHHHhCCCHHHHHHHHHh
Q 013472 400 EDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~ 421 (442)
|..|+|+.+|++..+|......
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8888888888888888777653
No 207
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=31.41 E-value=78 Score=26.72 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...|..|||+.+|+|..+|...++..
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999987654
No 208
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=31.22 E-value=1.2e+02 Score=22.96 Aligned_cols=35 Identities=3% Similarity=-0.056 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+-..++.+... .+.|.+|+|+.+|++..+|..+..
T Consensus 15 ~g~~l~~~R~~--~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 15 LCQRLRQARLD--AGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 33334444333 457999999999999999988764
No 209
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=31.18 E-value=61 Score=27.78 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-++..+|..+.| ...|.++||+..|++.+++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHH
Confidence 445667777778877778 5789999999999999998654
No 210
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=31.12 E-value=87 Score=26.16 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.|-..|.++||+..|++..++...
T Consensus 10 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~ 48 (190)
T 3jsj_A 10 PRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQL 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHH
No 211
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=30.92 E-value=64 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
.+|..+..++..+.| ...|.++||+..|++..++
T Consensus 14 ~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 48 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTI 48 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchH
No 212
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=30.89 E-value=72 Score=26.50 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcccCCCCc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRIVGSID 429 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~~~SLD 429 (442)
++.|.+|+|+.+|++..+|..+.+--....+++
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~ 84 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNYKLEGFSVE 84 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 457999999999999999988765322134544
No 213
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=30.85 E-value=84 Score=26.72 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 51 (216)
T 3f0c_A 12 KLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYY 51 (216)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHH
No 214
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.81 E-value=83 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.017 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 10 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~ 48 (202)
T 2d6y_A 10 KARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 4566666677777777 5789999999999999999764
No 215
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=30.73 E-value=71 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|.++||+..|++..++...
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 34566777777777777 4589999999999999999765
No 216
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=30.72 E-value=84 Score=26.58 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|..+||+..||+..++...
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 17 TTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhh
Confidence 345567777777777777 5689999999999999999764
No 217
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.67 E-value=83 Score=25.47 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|..++...
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 5799999999999999999887644
No 218
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=30.63 E-value=45 Score=25.89 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.8
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.+..+||..+||+..+|...+...
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 589999999999999998876543
No 219
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=30.27 E-value=45 Score=28.19 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|+|..+|...++..
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999887644
No 220
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=30.21 E-value=64 Score=31.00 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.8
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
....+..|||+.||+|..+|+..+..++
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4568999999999999999999988765
No 221
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=30.19 E-value=61 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=22.2
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|.++||..+|++.++|-.++...+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5999999999999999998887654
No 222
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=30.18 E-value=87 Score=23.79 Aligned_cols=24 Identities=13% Similarity=-0.049 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+..|.+|+|+.+||+..+|..+..
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467999999999999999988765
No 223
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.01 E-value=93 Score=25.90 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|..++...
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 35799999999999999999887654
No 224
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=29.98 E-value=47 Score=24.17 Aligned_cols=24 Identities=0% Similarity=-0.104 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+.|..|+|+.+|++..+|..+..-
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 569999999999999999988653
No 225
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=29.78 E-value=1e+02 Score=27.43 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 377 LNREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 377 v~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
......+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 21 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~ 63 (231)
T 2zcx_A 21 KQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRY 63 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 34555667777777777777 5789999999999999998654
No 226
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=29.65 E-value=78 Score=27.12 Aligned_cols=40 Identities=13% Similarity=0.015 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|..+||+..||+..++...
T Consensus 15 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 15 PRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 345567777777777777 5689999999999999999765
No 227
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=29.46 E-value=52 Score=30.67 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.+-||..|||+.+|+|..+|+.++...
T Consensus 34 ~~lPse~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 356899999999999999999998753
No 228
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=29.41 E-value=56 Score=27.18 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
..+|-.+..++..+.| ...|..+||+..|++..++..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 10 LQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 3566777777777777 568999999999999999854
No 229
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.36 E-value=39 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+..++..|||+.+|++..+|...+...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999999987654
No 230
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=29.19 E-value=86 Score=29.44 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.3
Q ss_pred HhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 365 ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 365 Rkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
...++.+.+|...-.. ..|..+++|+..|+|+++|..+-..+.
T Consensus 80 ~~~~r~v~IPV~Y~~~----------------~gpDL~~vA~~~gLs~~evi~~H~~~~ 122 (225)
T 2phc_B 80 RIKGKTIEIPVAYGGE----------------FGPDIEFVAQYNGLSVDDVIEIHSKPL 122 (225)
T ss_dssp HHHTTEEEEEEEESTT----------------TCTTHHHHHHHHTCCHHHHHHHHHSSC
T ss_pred CCCCcEEEEEeEeCCC----------------CCCCHHHHHHHhCcCHHHHHHHhhCCC
Confidence 3345677788764322 268999999999999999998765443
No 231
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=28.85 E-value=51 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.|.+|||+.++++..+|+..+...+.
T Consensus 163 ~g~s~~eIa~~l~is~~TV~~hi~~l~~ 190 (225)
T 3c3w_A 163 EGLTNKQIADRMFLAEKTVKNYVSRLLA 190 (225)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3579999999999999999988776553
No 232
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=28.85 E-value=49 Score=27.48 Aligned_cols=40 Identities=25% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIY 48 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHH
No 233
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=28.79 E-value=75 Score=25.49 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|...+...
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHH
Confidence 5799999999999999998887654
No 234
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=28.74 E-value=96 Score=24.85 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=27.5
Q ss_pred HHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 392 ~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+.|...+.-+||+.+|++-.+|..++...+
T Consensus 28 LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 28 LTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33458888999999999999999999988766
No 235
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=28.71 E-value=1.9e+02 Score=26.41 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=30.7
Q ss_pred hhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHH
Q 013472 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364 (442)
Q Consensus 315 Y~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~L 364 (442)
........+|+.+...+.--.--..|.. -|..|..|+..+.-+...+.+
T Consensus 181 ~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~G~t~~~~l~~~Rl~~A~~lL 229 (276)
T 3gbg_A 181 DITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLM 229 (276)
T ss_dssp TTTSCCCHHHHHHHHTCCHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHCcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 3345678888888877766666666653 677777777654444444433
No 236
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=28.67 E-value=51 Score=27.36 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
...+|..+..++..+.| ...|..+||+..|++.+++
T Consensus 7 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 43 (191)
T 1sgm_A 7 SREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSL 43 (191)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHH
T ss_pred hHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhH
No 237
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=28.44 E-value=81 Score=26.03 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.2
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|..|||+.+|++..+|...+....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~ 67 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLH 67 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6999999999999999999877543
No 238
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=28.43 E-value=84 Score=26.64 Aligned_cols=39 Identities=23% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 11 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (216)
T 3s5r_A 11 TRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYY 50 (216)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHH
No 239
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=28.43 E-value=89 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 10 ~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~ 47 (197)
T 2gen_A 10 DEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHH 47 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 240
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=28.39 E-value=1.1e+02 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..++..|||+.+|++..+|..++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~L 46 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKL 46 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 35899999999999999999887643
No 241
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=28.39 E-value=84 Score=26.57 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
Confidence 4455677778788877778 5789999999999999998754
No 242
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=28.31 E-value=91 Score=27.43 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..|.++||..+|++.++|-.++...+.
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 347899999999999999999886653
No 243
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.31 E-value=61 Score=27.12 Aligned_cols=26 Identities=8% Similarity=-0.072 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.+..+||+.+|++..+|...+...+
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 244
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=28.29 E-value=84 Score=27.66 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|..+||+..|++..++...
T Consensus 44 ~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~ 84 (236)
T 3q0w_A 44 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFY 84 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHH
No 245
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=28.06 E-value=37 Score=30.21 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.-.|..|+|+.||++..+|+.+++..+
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~ 56 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGH 56 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCC
Confidence 345899999999999999999987554
No 246
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=28.03 E-value=1.1e+02 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|..+..+|..+.| ...|.++||+..|++..++...
T Consensus 6 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (185)
T 2yve_A 6 KEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYH 44 (185)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHh
Confidence 3456667777777777 5789999999999999998654
No 247
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=27.96 E-value=1.2e+02 Score=26.91 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCCH-HHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSL-AEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~-etVk~~l~~ar 423 (442)
..|.++||..+|++. ++|-.++...+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 579999999999999 79998887654
No 248
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.94 E-value=1.2e+02 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=17.7
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 013472 400 EDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~ 420 (442)
..++||..||+++..|+-..+
T Consensus 32 ~r~~LA~~l~L~e~qVqvWFq 52 (64)
T 2e19_A 32 ELSKIADSVNLPLDVVKKWFE 52 (64)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCcChhhcCcchh
Confidence 446899999999999998764
No 249
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=27.93 E-value=50 Score=30.74 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=38.6
Q ss_pred ecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 372 KIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 372 rlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+|..+...+...-+....|..+--...|-+|||+.+|++..+|+.-+.+..
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~fg 57 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFG 57 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3565555555566667777766544567999999999999999998876553
No 250
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=27.78 E-value=63 Score=26.45 Aligned_cols=26 Identities=8% Similarity=-0.056 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|-.++...
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 35699999999999999999887644
No 251
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=27.76 E-value=78 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.145 Sum_probs=23.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+.|.++||+.+|++...|.+.+.....
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~L 78 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDL 78 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 579999999999999999999887653
No 252
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.73 E-value=1.1e+02 Score=24.47 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+...++.+... ++.|.+|+|+.+|++..+|..+..
T Consensus 22 ~g~~lr~~R~~--~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 22 LAYNMRLFRVN--KGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33344444333 346888888888888888877654
No 253
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.71 E-value=86 Score=27.44 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|..+||+..||+..++...
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 345667777777777777 5689999999999999999764
No 254
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=27.68 E-value=47 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+.+|||+.+|++++.|..+++..+
T Consensus 48 ~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 48 SKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45889999999999999999987543
No 255
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=27.67 E-value=47 Score=26.27 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
++.|..|+|+.+||+..+|..+..-
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4679999999999999999887654
No 256
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=27.64 E-value=84 Score=28.82 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.+.++...+.+.+...+|.+++|+.+|+|+..+....+
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35556666666677788999999999999999988765
No 257
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=27.49 E-value=78 Score=26.91 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
....+|-.+..+|..+.| ...|.++||+..|++.+++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 52 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHH 52 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 344567777777777777 5789999999999999998654
No 258
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=27.42 E-value=54 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
....+|-.+..++..+.| ...|..+||+..|++.+++..
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~ 46 (180)
T 2fd5_A 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYA 46 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGG
T ss_pred cCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHH
Confidence 344566777777777777 478999999999999988743
No 259
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=27.00 E-value=71 Score=27.34 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-.+..++..+.| ...|..+||+..||+.+++...
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~ 43 (212)
T 3rh2_A 5 RDKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYH 43 (212)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 3456667777777777 4589999999999999999764
No 260
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=26.96 E-value=1e+02 Score=25.36 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|+|..+|...++..
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4589999999999999999887644
No 261
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=26.91 E-value=96 Score=26.55 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|..+..+|..+.| ...|..+||+..|++.+++...
T Consensus 11 ~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~h 52 (198)
T 3cjd_A 11 AALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTH 52 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHH
Confidence 3455667777788777777 5789999999999999998654
No 262
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=26.88 E-value=47 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
..+|-.+..++..+.| ...|..+||+..|++.+++..
T Consensus 5 r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 42 (189)
T 3geu_A 5 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYY 42 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 3456666666666666 558999999999999999853
No 263
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=26.83 E-value=91 Score=27.39 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+...+|..+..+|..+.| ...|.++||+..||+..++...
T Consensus 12 ~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~ 53 (231)
T 2qib_A 12 EERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHY 53 (231)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHH
Confidence 3455677788888888877 4789999999999999998754
No 264
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=26.81 E-value=47 Score=28.38 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIR 416 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk 416 (442)
+...+|-++..+|..+.| ...|.++||+..||+.+++.
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y 52 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLY 52 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGT
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeee
Confidence 345667777778877777 57899999999999998874
No 265
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=26.78 E-value=65 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|.++||+..|++.+++...
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 49 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYH 49 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhee
Confidence 344567777777777777 5789999999999999998654
No 266
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=26.72 E-value=1e+02 Score=28.04 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~ 242 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLE 242 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35899999999999999999887655
No 267
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=26.59 E-value=81 Score=27.07 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
....+|-.+..++..+.|-..|.++||+..|++..++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tiY~~ 51 (224)
T 1t33_A 12 QAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYY 51 (224)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHh
Confidence 3445677777777777773399999999999999999764
No 268
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=26.58 E-value=45 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-|+..|||+.+|+|..+|+.++...
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45699999999999999999997743
No 269
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=26.57 E-value=1.1e+02 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|..+||+..||+..++...
T Consensus 48 ~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~y 88 (260)
T 2of7_A 48 RTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHH
Confidence 445667777777777777 5689999999999999999754
No 270
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.55 E-value=98 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..+|..+.| ...|.++||+..||+..++...
T Consensus 14 ~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~ 51 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAA 51 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHH
Confidence 456666677777777 5689999999999999999764
No 271
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=26.55 E-value=2.3e+02 Score=22.86 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHH
Q 013472 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIR 416 (442)
Q Consensus 337 ieKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk 416 (442)
.++|+... +-.|...++.+.+.+.+.+.- .-+..+......+- ..|. ..+ ..+..|||+.+|++..+|.
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~---~~~~~l~~~~~~iL---~~l~-~~~-~~t~~ela~~l~~~~~tvs 72 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAY---TQKFGIGMTEWRII---SVLS-SAS-DCSVQKISDILGLDKAAVS 72 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----C---CGGGTCCHHHHHHH---HHHH-HSS-SBCHHHHHHHHTCCHHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHH---HHhcCCCHHHHHHH---HHHH-cCC-CCCHHHHHHHHCCCHHHHH
Confidence 44555432 455666667777766665431 11111111111111 1222 123 7799999999999999999
Q ss_pred HHHHhc
Q 013472 417 SASECL 422 (442)
Q Consensus 417 ~~l~~a 422 (442)
..+...
T Consensus 73 ~~l~~L 78 (148)
T 3nrv_A 73 RTVKKL 78 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886644
No 272
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=26.53 E-value=97 Score=26.75 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-++..+|..+.| ...|.++||+..|++..++...
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~ 62 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRY 62 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 445677888888888888 4579999999999999999754
No 273
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=26.48 E-value=38 Score=28.32 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIR 416 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk 416 (442)
+...+|-.+..++..+.| ...|..+||+..|++.+++.
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y 50 (199)
T 3on2_A 12 SLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPS 50 (199)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHH
Confidence 345667777777777777 45899999999999998863
No 274
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=26.42 E-value=58 Score=27.21 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..+|..+.| ...|..+||+..|++.+++...
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (186)
T 2jj7_A 8 TMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYY 47 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhh
Confidence 34566667777776666 4589999999999999999764
No 275
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=26.37 E-value=57 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|..+||+..||+.+++...
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 58 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhh
Confidence 344567777777777777 5689999999999999999654
No 276
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.29 E-value=81 Score=27.03 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
+...+|-.+..+|..+.| ...|.++||+..|++..++..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~ 51 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHK 51 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHT
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHH
Confidence 345567777777777777 568999999999999999854
No 277
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=26.26 E-value=57 Score=28.09 Aligned_cols=40 Identities=5% Similarity=-0.040 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~ 68 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNY 68 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHh
Confidence 455667777778777777 5689999999999999998654
No 278
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.23 E-value=1.1e+02 Score=26.77 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
.....+|-.+..++..+.| ...|..+||+..|++..++..
T Consensus 15 ~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 15 TQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 3455667777777777777 568999999999999999864
No 279
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=26.21 E-value=93 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.3
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|.++||..+|++.++|-.++...+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5899999999999999999987655
No 280
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.19 E-value=1.3e+02 Score=22.96 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=15.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|..++|+.+|++..+|..+.+
T Consensus 21 gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 34666777777777777766654
No 281
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=26.13 E-value=83 Score=27.13 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
..+|-.+..+|..+.| ...|.++||+..|++.+++..
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (219)
T 2w53_A 13 REGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYW 50 (219)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhh
Confidence 4566777777777777 568999999999999999854
No 282
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.07 E-value=1.1e+02 Score=25.60 Aligned_cols=25 Identities=8% Similarity=-0.058 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|-..+...
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6799999999999999998886643
No 283
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=26.00 E-value=57 Score=23.35 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 013472 401 DIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 401 ~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+||..+||+..+|.......
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999998886543
No 284
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=25.85 E-value=68 Score=26.51 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 382 ~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
..+.++...+.+ ....+.++||+.+|++...+....+.
T Consensus 79 ~~l~~a~~~i~~--~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 79 DKITHACRLLEQ--ETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHTCS--SSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555555443 56789999999999998888877653
No 285
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=25.77 E-value=1.4e+02 Score=26.69 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHhC--CCHHHHHHHHHhc
Q 013472 381 ISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASECL 422 (442)
Q Consensus 381 i~kI~ka~~~L~~elgr~PS~eEIAe~LG--IS~etVk~~l~~a 422 (442)
...+...+..+.=-.+...|.++||+.+| ++...|+.++...
T Consensus 5 ~~~~~~~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L 48 (162)
T 1t6s_A 5 RQQLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDEL 48 (162)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHH
Confidence 33344444443333477889999999999 9999999887543
No 286
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.76 E-value=95 Score=26.59 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-++..++..+.| ...|.++||+..|++.+++...
T Consensus 11 r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~ 49 (203)
T 2np5_A 11 PERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHH 49 (203)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHH
Confidence 3566677777777777 5689999999999999999654
No 287
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=25.73 E-value=36 Score=30.83 Aligned_cols=64 Identities=17% Similarity=0.030 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhh-----cCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 356 IRKSISKMVARH-----ARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 356 IRnaI~r~LRkq-----sr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+...+..|+.-. .....+|........++-++..+++ .|+..|+.+||+.+|.+...|-.++..
T Consensus 51 ~~~~l~~Yf~G~~~~~~~~~f~lpl~~t~Fq~~Vw~~l~~IP--~G~t~TYg~iA~~~G~p~RaVG~Al~~ 119 (167)
T 2g7h_A 51 AEIILKLYFAEIDDKKVRELISYKLEVPEFTKKVLDIVKDIE--FGKTLTYGDIAKKLNTSPRAVGMALKR 119 (167)
T ss_dssp HHHHHHHHTTCCCSCCTTTTCCBCSCCSSCCHHHHHHHTTCC--TTCCEEHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCccccccccCcccccHHHHHHHHHHhcCCC--CCCEeeHHHHHHHhCCCHHHHHHHHHh
Confidence 334555666654 3455667665344445555555544 588889999999999997777776653
No 288
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=25.69 E-value=48 Score=28.17 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
+...+|-.+..+|..+.| ...|..+||+..||+.+++..
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHH
Confidence 345567777777777777 468999999999999988743
No 289
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.66 E-value=1.2e+02 Score=24.85 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..|..|||+.+|++..+|..++...
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4799999999999999999887644
No 290
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.43 E-value=88 Score=25.71 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|...+...
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4699999999999999999887654
No 291
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=25.40 E-value=1.2e+02 Score=26.73 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..+|..+.| ...|..+||+..|++..+|...
T Consensus 8 ~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~h 47 (235)
T 2fbq_A 8 TVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYH 47 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 44567777777777778 5789999999999999998654
No 292
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=25.20 E-value=1.4e+02 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|-..+...
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45799999999999999999886643
No 293
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=25.19 E-value=1.3e+02 Score=23.73 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHc--CCCCcHHHHHHHh-----CCCHHHHHHHHHhcccC
Q 013472 382 SKIQKARKALTNSH--GKYPEDIEIAKYT-----GLSLAEIRSASECLRIV 425 (442)
Q Consensus 382 ~kI~ka~~~L~~el--gr~PS~eEIAe~L-----GIS~etVk~~l~~ar~~ 425 (442)
..|+..+.+|.... ....|+++||+.| .|+..||..+.....-+
T Consensus 19 ~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe~l~Ip 69 (76)
T 2ahq_A 19 GELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIP 69 (76)
T ss_dssp HHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHcCCC
Confidence 34566666666554 3457999999999 89999998887765544
No 294
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=25.13 E-value=2.1e+02 Score=23.07 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...+..|||+.+|++..+|..++...
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 45799999999999999999887644
No 295
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=25.10 E-value=83 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|.++||+..||+.+++...
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~y 64 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQY 64 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHh
Confidence 345667777777777777 5689999999999999998654
No 296
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=25.03 E-value=3.5e+02 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=25.2
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.|...|..|||+..|+++.+++...+....
T Consensus 162 ~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 162 EGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466679999999999999999998765544
No 297
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=25.03 E-value=83 Score=27.89 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQ 211 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHH
Confidence 35899999999999999999887654
No 298
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=24.98 E-value=1.1e+02 Score=26.64 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.....+|-.+..+|..+.| ...|.++||+..|++..++...
T Consensus 38 ~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~ 79 (214)
T 2guh_A 38 EQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKY 79 (214)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHH
Confidence 4455677788888888877 4589999999999999999765
No 299
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=24.95 E-value=80 Score=27.42 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|..+..++..+.| ...|..+||+..||+.+++...
T Consensus 7 r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 45 (228)
T 3nnr_A 7 RDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYH 45 (228)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhc
Confidence 4566677777777777 5589999999999999999764
No 300
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=24.72 E-value=3.4e+02 Score=23.44 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|..+||+.||++..+|..++..
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 3569999999999999999988753
No 301
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=24.46 E-value=1e+02 Score=26.92 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|..+||+..|++..+|...
T Consensus 15 ~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~ 54 (208)
T 3v6g_A 15 RRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYY 54 (208)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHH
Confidence 44567777777777777 5689999999999999998654
No 302
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=24.31 E-value=51 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|.++||+..|++.+++...
T Consensus 14 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 14 NSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 345566677777777667 4689999999999999999765
No 303
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=24.19 E-value=1.1e+02 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.2
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 400 EDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..++|+.+|++..+|-.+++..+
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 899999999999999999886444
No 304
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=23.95 E-value=88 Score=27.81 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCceeccccc---HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 357 RKSISKMVARHARGIKIPCKL---NREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 357 RnaI~r~LRkqsr~irlP~~v---~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
...+..++........+|... .....++-++..+++ .|+..|+.+||+.+|.+...|-.++..
T Consensus 46 ~~~l~~Yf~G~~~~f~lpl~~~g~t~fq~~V~~~l~~IP--~G~~~tYg~iA~~~g~p~RaVG~A~~~ 111 (156)
T 1wrj_A 46 FYKLDLYFEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIK--WGEVRTYKQVADAVKTSPRAVGTALSK 111 (156)
T ss_dssp HHHHHHHTTTCCCCCCCCBCCTTSCHHHHHHHHHHTTSC--TTCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCeeecCCCCCHHHHHHHHHHhCCC--CCceEcHHHHHHHhCCCccHHHHHHHh
Confidence 344555665444445566654 345566666666554 588889999999999999666666653
No 305
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=23.95 E-value=73 Score=26.32 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
....+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHH 54 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHH
Confidence 445667777777777777 4589999999999999999764
No 306
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=23.93 E-value=69 Score=27.04 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|..+||+..|++.+++...
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 54 (215)
T 3e7q_A 14 QRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHH 54 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 445667777777777767 5789999999999999998754
No 307
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=23.92 E-value=70 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=23.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..++.+|||+.+|+|...|+.++...+
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~ 55 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLK 55 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4457999999999999999999876544
No 308
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.79 E-value=1.1e+02 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..++..+.| ...|.++||+..|+|.+++...
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 49 (209)
T 2gfn_A 9 ERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHY 49 (209)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhc
Confidence 445567777777777777 5689999999999999998654
No 309
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=23.66 E-value=50 Score=28.36 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+|.++||..+|++.++|-.+++..+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36889999999999999999887654
No 310
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=23.64 E-value=1.2e+02 Score=27.84 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..|||+.+|+|..+|+.++...
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L 57 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLL 57 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 55899999999999999999997643
No 311
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=23.57 E-value=71 Score=26.82 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|..+||+..|++..++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 60 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRY 60 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHH
No 312
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.56 E-value=1.3e+02 Score=24.52 Aligned_cols=25 Identities=4% Similarity=-0.098 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|..++...
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887654
No 313
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=23.56 E-value=1.4e+02 Score=26.16 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|..+..+|..+.| ...|..+||+..|++..++...
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~ 47 (213)
T 3ni7_A 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 344567777777777778 6789999999999999998654
No 314
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.51 E-value=1.4e+02 Score=23.61 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=18.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|..++|+.+|++..+|..+..
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 45888888888888888877654
No 315
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=23.44 E-value=53 Score=30.41 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.+.++...+.+.+...++.++||+.+|+|...+....+
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46666777776777889999999999999999887654
No 316
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=23.43 E-value=53 Score=27.95 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
+...+|-.+..++..+.| ...|..+||+..|++..++..
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 13 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 455677788888888878 458999999999999988743
No 317
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=23.30 E-value=60 Score=24.81 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=22.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+...+..|||+.+|++..+|...+...
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345799999999999999999887654
No 318
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.28 E-value=62 Score=25.22 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.|..+||..+||+..+|...+....
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 46899999999999999999887655
No 319
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=23.27 E-value=17 Score=36.21 Aligned_cols=93 Identities=11% Similarity=0.116 Sum_probs=46.7
Q ss_pred CCCCCHHhHHHH-HHHHHHHhH-HhcCCCCCCChHHHHHHHHHHHHHHHHHhhcCceecccccHHHHHHHHHHHHHHHHH
Q 013472 317 GLGIPFSDLLQA-GNVGVLQGA-ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNS 394 (442)
Q Consensus 317 g~g~d~EDLIQE-G~IGLirAi-eKFDp~kG~rFSTYa~~wIRnaI~r~LRkqsr~irlP~~v~e~i~kI~ka~~~L~~e 394 (442)
..|.|.+|+++. |--++.+.+ +.- ..|..|....+...+-..= ..-| ..+..+...+..+...
T Consensus 232 P~gkDpdd~l~~~G~~~~~~~i~~~~-----~~~~~f~~~~~~~~~~~~~------l~~~----~~~~~~~~~i~~i~~~ 296 (329)
T 4edg_A 232 PSGMDPDEYIGKYGNDAFTTFVKNDK-----KSFAHYKVSILKDEIAHND------LSYE----RYLKELSHDISLMKSS 296 (329)
T ss_dssp CTTCCHHHHHHHHCHHHHHHHHHHCC-----EEHHHHHHHHTHHHHHHCH------HHHH----HHHHHHHHHHHHCCCH
T ss_pred CCCCCHHHHHHHhCHHHHHHHHHhcC-----CCHHHHHHHHHHhhccCCC------CcHH----HHHHHHHHHHHhCCCH
Confidence 358899999986 343333332 222 2477777665554421110 0001 2222333333322222
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..+..-..++|+.+||+++.++..+.....
T Consensus 297 ~~r~~y~~~la~~~~i~~~~l~~~~~~~~~ 326 (329)
T 4edg_A 297 ILQQKAINDVAPFFNVSPEQLANEIQFNQA 326 (329)
T ss_dssp HHHHHHHHHHGGGGTCCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHhhcC
Confidence 223334578999999999999987654443
No 320
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=23.27 E-value=1e+02 Score=24.19 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCcHHHHHHHhCCCHH-HHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLA-EIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~e-tVk~~l~~a 422 (442)
..|..|||+.|||+.. .|+..+...
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~L 50 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLIDM 50 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 5689999999999999 999887653
No 321
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=23.04 E-value=65 Score=24.63 Aligned_cols=25 Identities=28% Similarity=0.127 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|...+...
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4799999999999999999987654
No 322
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=22.97 E-value=1.4e+02 Score=27.55 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..|||+.+|+|..+|+.++...
T Consensus 33 ~lPse~~La~~~~vSr~tvr~Al~~L 58 (243)
T 2wv0_A 33 PLPSEREYAEQFGISRMTVRQALSNL 58 (243)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56899999999999999999997644
No 323
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=22.90 E-value=81 Score=25.58 Aligned_cols=66 Identities=5% Similarity=0.012 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHH-HhhcCceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 348 FSTYVQYWIRKSISKMV-ARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 348 FSTYa~~wIRnaI~r~L-Rkqsr~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.-.|....+.+.+.+.+ .+.-....++.... . ....|.. ....+..|||+.+|++..+|..++...
T Consensus 9 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~---iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQF----L---VLTILWD--ESPVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHH----H---HHHHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH----H---HHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 45566666777776666 43322122221111 1 1122221 235799999999999999999887654
No 324
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=22.87 E-value=53 Score=25.13 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.++.|..++|+.+|++..+|..+..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3468999999999999999997754
No 325
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=22.87 E-value=1.8e+02 Score=24.79 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=34.4
Q ss_pred ceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 370 GIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 370 ~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+.+|.........-+ ..+..++. +.+..|+|...|+|+.+|..++...+.
T Consensus 68 ~iYIPk~~~~~~~~Rn---~~I~~~f~-G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 68 QVYIPRGQALDSLIRD---LRIWNDFN-GRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CCCCCCSHHHHHHHHH---HHHHHHCC-SSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eEEeeCCchHHHHHHH---HHHHHHhC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5677876543322212 22333444 679999999999999999999876653
No 326
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=22.79 E-value=1.3e+02 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+..++..|||+.+|++..+|..++...
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 556899999999999999999887654
No 327
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.74 E-value=1.6e+02 Score=22.75 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCcHHHHHHHhCCCHHH----HHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAE----IRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~et----Vk~~l~ 420 (442)
+.|.+|+|+.+|++..+ |..+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 56899999999999998 766654
No 328
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=22.59 E-value=3.2e+02 Score=22.40 Aligned_cols=74 Identities=15% Similarity=-0.099 Sum_probs=49.7
Q ss_pred hC-CCCChHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHh
Q 013472 266 SG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339 (442)
Q Consensus 266 ~g-r~pt~~ewA~a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieK 339 (442)
.| ...|..+.|+.+|++...+-.-...-+.-+..++..+..-+............+..+.+...+-.++..+..
T Consensus 23 ~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (199)
T 3qbm_A 23 SGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAER 97 (199)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHGGGTC
T ss_pred hCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHhhh
Confidence 46 568999999999999888776665555566666766666666555555555556666666655555544433
No 329
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=22.40 E-value=1.6e+02 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.021 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...|..|||+.+|++..+|...+...
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999887654
No 330
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=22.36 E-value=1e+02 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.4
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+..+.|+.|||+.+|+|..+|..+-++.
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 3446899999999999999997765543
No 331
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.35 E-value=77 Score=23.95 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=22.3
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 400 EDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
|..++|+.||++...|-.+++..+.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r~ 39 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGLP 39 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 9999999999999999999876553
No 332
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=22.30 E-value=58 Score=27.40 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
+...+|-.+..+|..+.| ...|..+||+..|++..++
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 53 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAV 53 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChh
No 333
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.15 E-value=1.8e+02 Score=23.10 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=17.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|..++|+.+||+..+|..+.+
T Consensus 41 glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 41 GVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 45788888888888888877654
No 334
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=22.08 E-value=1.4e+02 Score=28.09 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..|||+.+|+|..+|+.++...
T Consensus 52 ~lPse~~La~~~~vSr~tvr~Al~~L 77 (272)
T 3eet_A 52 RLPSQARIREEYGVSDTVALEARKVL 77 (272)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56799999999999999999997643
No 335
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.07 E-value=2.8e+02 Score=21.57 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhC-CCCChHHHHHHcCCCHHHHHHHHHh
Q 013472 255 LERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAF 292 (442)
Q Consensus 255 le~~~~~L~~~~g-r~pt~~ewA~a~g~deeeL~~~l~~ 292 (442)
+.++..-+..... ..++.+++|+.+|++...|.+.++.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445556666677 7899999999999999999887775
No 336
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.02 E-value=60 Score=23.60 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=18.1
Q ss_pred cHHHHHHHhCCCHHHHHHHH
Q 013472 400 EDIEIAKYTGLSLAEIRSAS 419 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l 419 (442)
|..++|+.+|++..+|....
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 88999999999999998764
No 337
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=22.02 E-value=99 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 379 REISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+...+|-.+..+|..+.| ...|..+||+..||+..++...
T Consensus 43 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~ 83 (255)
T 3g1o_A 43 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFY 83 (255)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHH
No 338
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.00 E-value=3.2e+02 Score=22.22 Aligned_cols=73 Identities=16% Similarity=0.013 Sum_probs=52.0
Q ss_pred hC-CCCChHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHH
Q 013472 266 SG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338 (442)
Q Consensus 266 ~g-r~pt~~ewA~a~g~deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAie 338 (442)
.| ...|..+.|+.+|++...+-.-...-+.-+..++..+...+............+..+.+...+..++..+.
T Consensus 25 ~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (195)
T 3ppb_A 25 QGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAM 98 (195)
T ss_dssp TCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhh
Confidence 46 67899999999999998887766655556667777776666666655555666777777766666555443
No 339
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=21.96 E-value=81 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|...+...
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999887644
No 340
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.95 E-value=91 Score=25.36 Aligned_cols=25 Identities=4% Similarity=-0.079 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|..++...
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 5799999999999999999887644
No 341
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=21.84 E-value=1.3e+02 Score=26.01 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..+|..+.| ...|.++||+..|++..++...
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~ 68 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYH 68 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhc
Confidence 45667777777777777 4789999999999999998654
No 342
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=21.75 E-value=1.5e+02 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.....+|..+..+|..+.| ...|..+||+..||+..++...
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~h 81 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYY 81 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHHH
Confidence 3445677777788887777 5679999999999999998754
No 343
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=21.70 E-value=31 Score=33.68 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.4
Q ss_pred CCChHHHHHHHHHhHHHHH
Q 013472 236 LTIARNEAEMSKGVQVVAN 254 (442)
Q Consensus 236 lLt~eeE~eL~~~iq~~~~ 254 (442)
|||.|.|++++++|..+..
T Consensus 1 LLTREgEI~IAKRIE~G~~ 19 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGIN 19 (339)
T ss_dssp ---CCTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 7999999999999998844
No 344
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.62 E-value=79 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|...+...
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4799999999999999999887654
No 345
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.60 E-value=1.8e+02 Score=23.46 Aligned_cols=24 Identities=0% Similarity=-0.040 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|..|+|+.+||+..+|..+..
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 356899999999999999987754
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.37 E-value=1.6e+02 Score=24.42 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHh-----CCCHHHHHHHHHhcc
Q 013472 385 QKARKALTNSHGKYPEDIEIAKYT-----GLSLAEIRSASECLR 423 (442)
Q Consensus 385 ~ka~~~L~~elgr~PS~eEIAe~L-----GIS~etVk~~l~~ar 423 (442)
+.++-++....+..+|.+||.+.+ +|+..||...|....
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 334444444456788999999999 999999998877543
No 347
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=21.35 E-value=89 Score=28.01 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+.+..+||+.||++..+|..++....
T Consensus 174 ~G~s~~~Ia~~l~is~~tv~r~l~~~~ 200 (209)
T 2r0q_C 174 EGQAISKIAKEVNITRQTVYRIKHDNG 200 (209)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhccc
Confidence 357999999999999999998876443
No 348
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=21.32 E-value=53 Score=29.28 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
...+..+||..||+|..+|+..+.....
T Consensus 212 ~g~~~~eia~~l~~s~~tv~~~l~~i~~ 239 (258)
T 3p7n_A 212 SGLRNKEVAARLGLSEKTVKMHRGLVME 239 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999999999999998775543
No 349
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=21.12 E-value=80 Score=28.13 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=21.7
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++..|..|||+.|||+..++.....
T Consensus 46 ~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 46 EEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4467999999999999999988665
No 350
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.10 E-value=2e+02 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|..++...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887654
No 351
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=20.99 E-value=99 Score=30.22 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.3
Q ss_pred HHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 391 LTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 391 L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
|....+...|-+|||+.||||...|.+.++..+
T Consensus 12 L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~ 44 (323)
T 3rkx_A 12 LYKNKPNYISGQSIAESLNISRTAVKKVIDQLK 44 (323)
T ss_dssp HHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333346678999999999999999999876554
No 352
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.94 E-value=67 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.095 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+-|+..|||+.+|+|..+|+.++..
T Consensus 28 ~lPse~~La~~~~vSr~tvr~Al~~ 52 (239)
T 3bwg_A 28 KLPVLETLMAQFEVSKSTITKSLEL 52 (239)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5679999999999999999999764
No 353
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.93 E-value=60 Score=24.08 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=20.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|.+|+|+.+|++..+|..+..
T Consensus 24 gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 24 SLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc
Confidence 57999999999999999988765
No 354
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.90 E-value=85 Score=24.53 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=18.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+.|..++|+.+|++..+|..+..-
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 468888888888888888776653
No 355
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.88 E-value=1e+02 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.|.++||+.+|++..+|...+....
T Consensus 134 g~t~~~iA~~lG~s~~~V~~~l~l~~ 159 (230)
T 1vz0_A 134 GLTQEEVARRVGKARSTVANALRLLQ 159 (230)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHc
Confidence 46899999999999999999887664
No 356
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=20.87 E-value=81 Score=25.51 Aligned_cols=33 Identities=9% Similarity=-0.051 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcccCCCCc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRIVGSID 429 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~~~SLD 429 (442)
.++.|..|+|+.+||+..+|..+.+- +...|++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~G-~~~~s~~ 57 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILNG-ARSITAD 57 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHTT-SSCCCHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHH
Confidence 34679999999999999999888753 3334544
No 357
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.84 E-value=74 Score=26.67 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+..|||+.+|+|..+|...++...
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLE 42 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999876543
No 358
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=20.81 E-value=86 Score=24.49 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.+.|.+|+|+.+||+..+|..+..
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 357899999999999999988765
No 359
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.79 E-value=2.9e+02 Score=23.08 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.1
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.+...+..|||+.+|++..+|-.++...
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3556788999999999999998886643
No 360
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.78 E-value=1.9e+02 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|.+++|+.+|++..+|..+.+
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457999999999999999988754
No 361
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.61 E-value=1.3e+02 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=28.0
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhc----ccCCCCccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECL----RIVGSIDQK 431 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~a----r~~~SLD~~ 431 (442)
.-...+.+.||+.+|++++.|+..+..+ +-..++|++
T Consensus 27 ~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred hcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 4556799999999999999999886544 233556665
No 362
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.56 E-value=75 Score=21.59 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=20.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 400 EDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..|+|..+|++.+++-..+....
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~g 27 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADAG 27 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHHT
T ss_pred cHHHHHHHHCcCHHHHHHHHHHcC
Confidence 457999999999999998877544
No 363
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=20.56 E-value=63 Score=27.92 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.++||..+|++.++|-.++...+
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 188 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALA 188 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35899999999999999999887654
No 364
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=20.53 E-value=1.4e+02 Score=24.45 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+..|||+.+|++..+|..++...
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5699999999999999999887644
No 365
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=20.50 E-value=74 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 384 I~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
+..+...|..+.| ...|..+||+..|++.+++
T Consensus 30 l~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 62 (212)
T 3nxc_A 30 LQSLALMLESSDGSQRITTAKLAASVGVSEAAL 62 (212)
T ss_dssp HHHHHHHHHC------CCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhcCChhhcCHHHHHHHhCCChhHH
No 366
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=20.49 E-value=69 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-|+..|||+.+|+|...|+.++...
T Consensus 27 ~LpsE~~La~~lgVSRtpVREAL~~L 52 (239)
T 2di3_A 27 HLPSERALSETLGVSRSSLREALRVL 52 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45688899999999999999998754
No 367
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=20.41 E-value=1.1e+02 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 384 I~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
|..+..+|..+.| ...|.++||+..||+..++
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~ 67 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSSI 67 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhHH
No 368
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=20.34 E-value=81 Score=27.43 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHhC---CCHHHHHHHHHhcccC
Q 013472 386 KARKALTNSHGKYPEDIEIAKYTG---LSLAEIRSASECLRIV 425 (442)
Q Consensus 386 ka~~~L~~elgr~PS~eEIAe~LG---IS~etVk~~l~~ar~~ 425 (442)
+....|....|+..|.+|||+.++ ++..+|+..+...+.-
T Consensus 152 ~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~K 194 (220)
T 1p2f_A 152 EILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKA 194 (220)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 344455555567789999999999 9999999988776643
No 369
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.25 E-value=1.7e+02 Score=23.89 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|.+|+|+.+|++..+|..+-.-
T Consensus 83 ~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 83 LSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 3579999999999999999887653
No 370
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.24 E-value=86 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..+|..+.| ...|.++||+..||+.+++...
T Consensus 4 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtlY~h 43 (208)
T 2g3b_A 4 RRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYH 43 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 34556666667766666 5689999999999999998654
No 371
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=20.11 E-value=81 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
+.|..++|+.+|++..+|..+..
T Consensus 17 gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 17 YLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 56999999999999999987643
No 372
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.09 E-value=3.5e+02 Score=21.89 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHHHh
Q 013472 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292 (442)
Q Consensus 255 le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l~~ 292 (442)
+.++..-+.......++.+++|+.+|++...|.+.++.
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455556666777899999999999999999887765
No 373
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=20.09 E-value=73 Score=26.76 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=6.2
Q ss_pred HHHHHHhCCCHHH
Q 013472 402 IEIAKYTGLSLAE 414 (442)
Q Consensus 402 eEIAe~LGIS~et 414 (442)
..||+.+|++++-
T Consensus 63 ~~iA~~f~V~~~y 75 (123)
T 3qwg_A 63 AALANFFRIKAAY 75 (123)
T ss_dssp HHHHHHTTSCTHH
T ss_pred HHHHHHhCCCHHH
Confidence 3455555555443
No 374
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=20.05 E-value=89 Score=24.13 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.8
Q ss_pred cCCCCcHHHHHHHhCCCHHH-HHHHHHhc
Q 013472 395 HGKYPEDIEIAKYTGLSLAE-IRSASECL 422 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~et-Vk~~l~~a 422 (442)
.+..++..|||+.+|++..+ |...+...
T Consensus 27 ~~~~~t~~eLa~~l~is~~t~vs~~l~~L 55 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGVSEKTFFMGLKDRL 55 (95)
T ss_dssp TTCCCCHHHHHHHHCCCHHHHHTTHHHHH
T ss_pred cCCCCCHHHHHHHHCCCchHHHHHHHHHH
Confidence 34468999999999999999 87776543
No 375
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.02 E-value=58 Score=27.69 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEI 415 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etV 415 (442)
.+...+|-.+..++..+.| ...|..+||+..|++.+++
T Consensus 18 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tl 56 (216)
T 3qqa_A 18 LARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNI 56 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHH
Confidence 3455677777777777777 5689999999999998765
Done!