Query 013472
Match_columns 442
No_of_seqs 316 out of 1686
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 11:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013472.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013472hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ku2a2 a.177.1.1 (A:93-272) S 100.0 1.1E-31 7.7E-36 244.9 12.3 148 223-370 2-180 (180)
2 d1siga_ a.177.1.1 (A:) Sigma70 99.9 1.4E-21 1.1E-25 191.2 14.6 83 285-367 248-334 (334)
3 d1rp3a3 a.177.1.1 (A:0-86) Sig 99.8 2.5E-19 1.8E-23 146.2 9.4 72 296-367 11-85 (87)
4 d1or7a2 a.177.1.1 (A:-1-111) S 99.5 4.4E-14 3.2E-18 117.8 8.9 85 282-369 8-93 (113)
5 d1ku2a1 a.4.13.1 (A:273-332) S 99.0 2.9E-10 2.1E-14 85.9 6.4 58 371-428 1-60 (60)
6 d1h3la_ a.177.1.1 (A:) Sigma f 99.0 3E-10 2.2E-14 88.0 6.5 69 295-365 7-75 (75)
7 d1l0oc_ a.4.13.2 (C:) SigmaF { 98.8 2.9E-09 2.1E-13 79.4 5.6 55 369-423 2-56 (57)
8 d1rp3a1 a.4.13.1 (A:87-163) Si 98.5 1.4E-08 1E-12 79.3 1.0 59 377-435 5-65 (77)
9 d1l0oc_ a.4.13.2 (C:) SigmaF { 96.2 0.0058 4.2E-07 44.3 6.7 41 253-293 15-55 (57)
10 d1or7a1 a.4.13.2 (A:120-187) S 95.2 0.0079 5.7E-07 44.4 4.0 29 396-424 32-60 (68)
11 d1rp3a1 a.4.13.1 (A:87-163) Si 95.0 0.021 1.6E-06 43.1 6.2 38 253-290 10-47 (77)
12 d1rp3a2 a.4.13.2 (A:164-234) S 94.5 0.011 7.7E-07 43.6 3.1 30 395-424 34-63 (71)
13 d1jhfa1 a.4.5.2 (A:2-72) LexA 92.8 0.11 8E-06 38.8 6.3 44 379-422 5-49 (71)
14 d1ku2a1 a.4.13.1 (A:273-332) S 92.4 0.16 1.2E-05 36.8 6.5 38 252-289 11-50 (60)
15 d1xsva_ a.4.13.3 (A:) Hypothet 88.9 0.25 1.8E-05 39.7 5.2 31 394-424 30-60 (106)
16 d1s7oa_ a.4.13.3 (A:) Hypothet 88.9 0.19 1.4E-05 40.4 4.5 30 395-424 29-58 (106)
17 d1l3la1 a.4.6.2 (A:170-234) Qu 84.3 0.78 5.7E-05 33.0 5.3 33 391-423 12-44 (65)
18 d1fsea_ a.4.6.2 (A:) Germinati 82.8 0.95 6.9E-05 32.6 5.2 32 392-423 13-44 (67)
19 d1yioa1 a.4.6.2 (A:131-200) Re 81.0 0.91 6.6E-05 33.2 4.6 37 388-424 17-53 (70)
20 d1a04a1 a.4.6.2 (A:150-216) Ni 79.8 1.1 7.9E-05 32.4 4.6 29 395-423 18-46 (67)
21 d1lvaa3 a.4.5.35 (A:511-574) C 79.0 2.4 0.00017 30.5 6.3 41 383-423 7-48 (64)
22 d1ku3a_ a.4.13.2 (A:) Sigma70 77.3 2.1 0.00015 30.7 5.4 27 396-422 26-52 (61)
23 d1bl0a1 a.4.1.8 (A:9-62) MarA 73.2 2.2 0.00016 29.0 4.5 40 383-422 4-43 (54)
24 d2p7vb1 a.4.13.2 (B:546-613) S 72.3 1.7 0.00012 32.0 3.8 26 397-422 24-49 (68)
25 d2cfxa1 a.4.5.32 (A:1-63) Tran 67.3 5.7 0.00042 28.1 5.8 26 398-423 19-44 (63)
26 d3e5ua1 a.4.5.4 (A:148-227) Ch 66.3 5.4 0.00039 29.0 5.7 26 398-423 30-55 (80)
27 d1bl0a1 a.4.1.8 (A:9-62) MarA 65.7 3.7 0.00027 27.7 4.4 38 254-291 4-41 (54)
28 d2cyya1 a.4.5.32 (A:5-64) Puta 65.5 6.6 0.00048 27.3 5.8 26 398-423 17-42 (60)
29 d2cg4a1 a.4.5.32 (A:4-66) Regu 64.9 6.5 0.00047 27.6 5.7 26 398-423 19-44 (63)
30 d1i1ga1 a.4.5.32 (A:2-61) LprA 62.7 7.4 0.00054 27.2 5.6 26 398-423 17-42 (60)
31 d1ttya_ a.4.13.2 (A:) Sigma70 62.5 3.2 0.00023 31.8 3.8 26 397-422 37-62 (87)
32 d2gaua1 a.4.5.4 (A:152-232) Tr 62.1 7.2 0.00053 28.2 5.7 26 398-423 29-54 (81)
33 d1q1ha_ a.4.5.41 (A:) Transcri 60.6 5.1 0.00037 30.9 4.6 27 396-422 31-57 (88)
34 d1d5ya1 a.4.1.8 (A:3-56) Rob t 60.0 4 0.00029 27.6 3.6 40 382-421 3-42 (54)
35 d1p4wa_ a.4.6.2 (A:) Transcrip 59.7 3.4 0.00025 31.2 3.5 28 396-423 35-62 (87)
36 d2hkua1 a.4.1.9 (A:18-87) Puta 58.3 6.8 0.00049 27.9 4.8 37 382-418 4-40 (70)
37 d1i5za1 a.4.5.4 (A:138-206) Ca 57.3 5.7 0.00041 28.2 4.2 25 399-423 30-54 (69)
38 d2g7ga1 a.4.1.9 (A:9-73) Putat 56.6 7.8 0.00057 27.3 4.9 35 382-417 4-38 (65)
39 d1stza1 a.4.5.51 (A:14-100) He 55.8 11 0.00082 28.5 6.0 43 381-423 6-50 (87)
40 d1efaa1 a.35.1.5 (A:2-60) Lac 55.6 4.4 0.00032 28.9 3.2 27 397-423 1-27 (59)
41 d1j5ya1 a.4.5.1 (A:3-67) Putat 55.0 9.8 0.00071 26.8 5.2 38 384-422 9-46 (65)
42 d1mkma1 a.4.5.33 (A:1-75) Tran 54.8 6.9 0.0005 28.4 4.4 30 394-423 16-45 (75)
43 d1hw1a1 a.4.5.6 (A:5-78) Fatty 54.4 5 0.00036 29.4 3.5 26 397-422 26-51 (74)
44 d2dt5a1 a.4.5.38 (A:4-77) Tran 54.1 9.6 0.0007 28.3 5.1 41 383-423 10-50 (74)
45 d1nd9a_ a.6.1.6 (A:) N-termina 53.2 3.7 0.00027 28.4 2.4 39 399-437 3-41 (49)
46 d2fq4a1 a.4.1.9 (A:9-77) Trans 53.1 17 0.0012 25.5 6.3 39 380-418 5-44 (69)
47 d2ppxa1 a.35.1.3 (A:30-91) Unc 52.9 7.8 0.00057 27.1 4.3 24 397-420 11-34 (62)
48 d1ft9a1 a.4.5.4 (A:134-213) CO 52.5 5 0.00037 29.3 3.3 26 398-423 30-55 (80)
49 d2ev0a1 a.4.5.24 (A:2-62) Mang 52.5 18 0.0013 25.4 6.2 39 384-423 8-46 (61)
50 d1pb6a1 a.4.1.9 (A:14-85) Hypo 52.3 17 0.0012 25.6 6.2 39 380-418 5-44 (72)
51 d3bwga1 a.4.5.6 (A:5-82) Trans 52.2 5.7 0.00041 29.0 3.6 26 397-422 21-46 (78)
52 d1t56a1 a.4.1.9 (A:22-94) Ethr 52.2 13 0.00098 26.0 5.6 37 382-418 6-43 (73)
53 d1vz0a1 a.4.14.1 (A:116-208) P 51.2 12 0.00086 28.6 5.5 34 387-423 11-44 (93)
54 d1s6la1 a.4.5.79 (A:21-80) Alk 50.9 6.2 0.00045 28.3 3.3 29 395-423 13-41 (60)
55 d1y7ya1 a.35.1.3 (A:5-73) Rest 50.3 22 0.0016 24.8 6.5 36 383-420 9-44 (69)
56 d1b0na2 a.35.1.3 (A:1-68) SinR 50.0 9.4 0.00068 26.7 4.4 27 397-423 13-39 (68)
57 d2fbqa1 a.4.1.9 (A:2-80) Trans 48.3 21 0.0015 25.4 6.3 39 380-418 5-44 (79)
58 d1v7ba1 a.4.1.9 (A:1-74) Trans 47.9 20 0.0015 25.2 6.1 37 382-418 7-44 (74)
59 d1ijwc_ a.4.1.2 (C:) HIN recom 47.8 9.7 0.00071 25.7 3.9 22 398-419 21-42 (47)
60 d2oi8a1 a.4.1.9 (A:8-86) Putat 47.0 20 0.0015 25.5 6.0 40 378-417 8-48 (79)
61 d2hsga1 a.35.1.5 (A:2-58) Gluc 46.4 7.5 0.00055 27.3 3.3 25 398-422 1-25 (57)
62 d1jt6a1 a.4.1.9 (A:2-72) Multi 45.7 19 0.0014 25.2 5.5 37 382-418 4-41 (71)
63 d3c07a1 a.4.1.9 (A:15-89) Puta 45.6 24 0.0018 24.6 6.2 38 381-418 7-45 (75)
64 d2fx0a1 a.4.1.9 (A:4-76) Hemol 45.4 24 0.0017 25.0 6.1 39 380-418 5-44 (73)
65 d1biaa1 a.4.5.1 (A:1-63) Bioti 45.1 9 0.00066 27.0 3.6 28 396-423 17-44 (63)
66 d2isya1 a.4.5.24 (A:2-64) Iron 45.0 18 0.0013 25.7 5.2 39 384-423 10-48 (63)
67 d1gdta1 a.4.1.2 (A:141-183) ga 44.9 14 0.00099 24.8 4.2 24 398-421 18-41 (43)
68 d1aisb2 a.74.1.2 (B:1206-1300) 44.5 3.7 0.00027 31.0 1.4 31 393-423 55-85 (95)
69 d1qpza1 a.35.1.5 (A:2-58) Puri 44.1 8.6 0.00063 27.0 3.3 24 400-423 2-25 (57)
70 d1z05a1 a.4.5.63 (A:10-80) Tra 43.7 15 0.0011 25.9 4.8 25 398-422 20-44 (71)
71 d2zcwa1 a.4.5.4 (A:118-199) Tr 43.3 9.3 0.00068 27.8 3.5 26 398-423 29-54 (82)
72 d2fd5a1 a.4.1.9 (A:1-76) Proba 43.0 12 0.00084 26.6 4.0 36 381-416 9-45 (76)
73 d1t33a1 a.4.1.9 (A:1-88) Putat 42.4 15 0.0011 26.9 4.6 39 380-418 13-51 (88)
74 d1jhfa1 a.4.5.2 (A:2-72) LexA 41.9 33 0.0024 24.4 6.5 21 264-284 19-40 (71)
75 d2b5aa1 a.35.1.3 (A:1-77) Regu 41.9 33 0.0024 24.1 6.5 36 384-421 11-46 (77)
76 d2fbha1 a.4.5.28 (A:8-144) Tra 41.8 48 0.0035 25.4 8.1 27 396-422 41-67 (137)
77 d1hlva1 a.4.1.7 (A:1-66) DNA-b 41.8 12 0.0009 27.0 3.9 27 396-422 23-49 (66)
78 d2i10a1 a.4.1.9 (A:10-78) Puta 41.7 25 0.0018 24.4 5.6 34 384-418 6-40 (69)
79 d2a6ca1 a.35.1.13 (A:1-69) HTH 41.2 24 0.0017 24.7 5.5 25 396-420 17-41 (69)
80 d1lmb3_ a.35.1.2 (3:) lambda C 41.2 30 0.0022 25.3 6.4 39 380-420 9-47 (87)
81 d2g7sa1 a.4.1.9 (A:3-76) Putat 41.1 24 0.0018 24.7 5.6 38 381-418 6-44 (74)
82 d1r71a_ a.4.14.1 (A:) Transcri 40.8 17 0.0012 28.0 5.0 31 398-428 30-60 (114)
83 d2o7ta1 a.4.1.9 (A:1-78) Trans 40.7 26 0.0019 24.9 5.8 39 380-418 8-47 (78)
84 d1rkta1 a.4.1.9 (A:2-82) Hypot 40.5 25 0.0018 25.1 5.6 37 381-417 13-50 (81)
85 d2auwa1 a.35.1.10 (A:88-154) H 40.5 20 0.0015 25.8 4.9 24 397-420 13-36 (67)
86 d1zyba1 a.4.5.4 (A:148-220) Pr 40.4 9.6 0.0007 27.5 3.1 25 399-423 28-52 (73)
87 d2croa_ a.35.1.2 (A:) cro 434 40.4 28 0.0021 23.8 5.7 25 397-421 15-39 (65)
88 d2id6a1 a.4.1.9 (A:1-75) Trans 40.0 6.2 0.00045 28.2 2.0 37 382-418 6-43 (75)
89 d2id3a1 a.4.1.9 (A:13-80) Puta 40.0 27 0.0019 24.2 5.6 37 382-418 9-46 (68)
90 d2r1jl1 a.35.1.2 (L:3-68) P22 40.0 25 0.0018 24.1 5.4 24 398-421 16-39 (66)
91 d2np5a1 a.4.1.9 (A:9-77) Trans 39.9 22 0.0016 24.5 5.0 37 382-418 4-41 (69)
92 d2g7la1 a.4.1.9 (A:16-83) Puta 39.8 23 0.0017 24.6 5.2 34 383-416 8-42 (68)
93 d1t6sa1 a.4.5.60 (A:1-85) Segr 38.3 38 0.0027 24.8 6.5 41 380-420 4-46 (85)
94 d2hyja1 a.4.1.9 (A:8-82) Putat 38.2 24 0.0018 24.8 5.2 38 380-417 6-44 (75)
95 d1ui5a1 a.4.1.9 (A:5-75) A-fac 37.9 31 0.0022 24.0 5.7 37 382-418 8-45 (71)
96 d1uxda_ a.35.1.5 (A:) Fructose 37.6 8.6 0.00063 27.1 2.4 24 399-422 1-24 (59)
97 d2gfna1 a.4.1.9 (A:4-80) Proba 37.5 31 0.0023 24.2 5.7 39 380-418 7-46 (77)
98 d1zk8a1 a.4.1.9 (A:6-77) Trans 37.4 21 0.0015 25.0 4.6 36 382-417 6-42 (72)
99 d1d5ya1 a.4.1.8 (A:3-56) Rob t 37.3 14 0.0011 24.6 3.5 37 255-291 5-41 (54)
100 d2gena1 a.4.1.9 (A:6-75) Proba 37.1 33 0.0024 23.6 5.7 36 383-418 4-40 (70)
101 d2d6ya1 a.4.1.9 (A:7-74) Putat 36.7 38 0.0027 23.4 6.0 37 382-418 5-42 (68)
102 d1vi0a1 a.4.1.9 (A:6-77) Hypot 36.6 29 0.0021 24.0 5.3 37 382-418 4-41 (72)
103 d2bgca1 a.4.5.4 (A:138-237) Li 36.6 28 0.002 26.6 5.6 26 398-423 31-57 (100)
104 d1y9qa1 a.35.1.8 (A:4-82) Prob 36.3 39 0.0028 23.8 6.1 24 397-420 20-43 (79)
105 d1r69a_ a.35.1.2 (A:) 434 C1 r 36.2 28 0.0021 23.5 5.1 24 397-420 13-36 (63)
106 d1lvaa3 a.4.5.35 (A:511-574) C 36.1 53 0.0039 22.8 6.7 26 263-288 17-42 (64)
107 d2hs5a1 a.4.5.6 (A:25-93) Puta 35.5 15 0.0011 26.1 3.5 27 396-422 23-49 (69)
108 d1utxa_ a.35.1.3 (A:) Putative 35.4 16 0.0012 25.3 3.7 25 397-421 13-37 (66)
109 d1sgma1 a.4.1.9 (A:5-77) Putat 34.8 15 0.0011 25.8 3.5 37 382-418 5-42 (73)
110 d1aisb1 a.74.1.2 (B:1108-1205) 34.5 80 0.0058 23.1 9.2 28 396-423 60-87 (98)
111 d1vola2 a.74.1.2 (A:208-316) T 33.9 9.3 0.00068 29.5 2.2 29 393-421 56-84 (109)
112 d2o38a1 a.35.1.13 (A:28-116) H 33.8 43 0.0031 24.5 6.2 35 384-420 12-46 (89)
113 d2jn6a1 a.4.1.19 (A:1-89) Unch 32.6 24 0.0017 26.0 4.4 27 398-424 23-49 (89)
114 d1k78a1 a.4.1.5 (A:19-81) Pax- 32.5 23 0.0017 25.2 4.1 31 398-428 30-60 (63)
115 d1ku9a_ a.4.5.36 (A:) DNA-bind 31.9 39 0.0029 26.2 6.0 27 396-422 39-65 (151)
116 d2g3ba1 a.4.1.9 (A:2-73) Putat 31.5 23 0.0017 24.8 4.0 37 382-418 5-42 (72)
117 d2iu5a1 a.4.1.9 (A:1-71) Trans 31.4 17 0.0013 25.5 3.2 36 382-417 9-45 (71)
118 d2icta1 a.35.1.3 (A:8-94) Anti 31.1 38 0.0028 24.8 5.4 25 398-422 14-38 (87)
119 d2vkva1 a.4.1.9 (A:6-67) Tetra 31.1 16 0.0012 25.0 3.0 35 384-418 4-39 (62)
120 d1a8oa_ a.28.3.1 (A:) HIV caps 29.4 31 0.0022 24.8 4.4 65 213-279 3-68 (70)
121 d1wi3a_ a.4.1.1 (A:) DNA-bindi 26.8 40 0.0029 23.9 4.6 28 396-423 30-60 (71)
122 d2cqxa1 a.4.1.1 (A:8-66) LAG1 25.9 51 0.0037 22.6 4.9 32 390-421 18-52 (59)
123 d1z6ra1 a.4.5.63 (A:12-81) Mlc 25.5 82 0.006 21.8 6.2 26 396-421 17-42 (70)
124 d2cuea1 a.4.1.1 (A:7-74) Paire 25.2 48 0.0035 23.4 4.8 21 400-420 30-50 (68)
125 d1s7ea1 a.4.1.1 (A:103-152) He 25.1 31 0.0022 22.8 3.5 21 400-420 27-47 (50)
126 d1v4ra1 a.4.5.6 (A:1-100) Tran 25.0 12 0.0009 28.5 1.5 26 397-422 32-57 (100)
127 d1x2ma1 a.4.1.1 (A:8-59) Lag1 25.0 59 0.0043 21.7 5.0 26 396-421 16-44 (52)
128 d1pdnc_ a.4.1.5 (C:) Paired pr 24.8 34 0.0025 26.9 4.3 31 398-428 32-62 (123)
129 d1x2na1 a.4.1.1 (A:6-67) Homeo 24.6 67 0.0048 22.1 5.4 23 401-423 35-57 (62)
130 d1z0xa1 a.4.1.9 (A:4-71) Trans 24.1 48 0.0035 22.8 4.6 35 383-417 6-42 (68)
131 d2d2sa1 a.118.17.2 (A:525-753) 24.1 91 0.0066 26.6 7.5 80 286-365 94-179 (229)
132 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 23.4 25 0.0018 24.1 2.8 21 400-420 29-49 (58)
133 d1x57a1 a.35.1.12 (A:8-85) End 22.7 80 0.0058 22.3 5.7 25 396-420 17-41 (78)
134 d3broa1 a.4.5.28 (A:3-137) Tra 22.5 96 0.007 23.4 6.7 28 395-422 42-69 (135)
135 d2hoea1 a.4.5.63 (A:10-71) N-a 21.9 34 0.0025 23.6 3.3 24 398-421 12-35 (62)
136 d1ufma_ a.4.5.47 (A:) COP9 sig 21.7 58 0.0042 23.9 4.8 28 396-423 28-55 (84)
137 d1yz8p1 a.4.1.1 (P:1-60) Pitui 21.6 49 0.0035 22.6 4.1 22 400-421 30-51 (60)
138 d1au7a1 a.4.1.1 (A:103-160) Pi 21.5 37 0.0027 23.2 3.4 26 396-421 21-49 (58)
139 d2r40d1 a.123.1.1 (D:287-529) 21.0 2.2E+02 0.016 23.8 11.0 48 297-344 53-106 (243)
140 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 20.9 65 0.0047 22.6 4.7 28 396-423 30-60 (67)
141 d2ofya1 a.35.1.3 (A:3-84) Puta 20.7 72 0.0053 23.1 5.2 22 399-420 26-47 (82)
142 d1k61a_ a.4.1.1 (A:) mat alpha 20.0 33 0.0024 23.7 2.8 26 398-423 25-53 (60)
No 1
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=99.97 E-value=1.1e-31 Score=244.91 Aligned_cols=148 Identities=27% Similarity=0.436 Sum_probs=118.7
Q ss_pred HHHHHHhcccCC-CCCChHHHHHHHHHhHHHHHHHHHHHHHH------------------HHhCCCCChHHHHHHcCC--
Q 013472 223 FSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLE------------------KESGKAASLNCWAQAAGV-- 281 (442)
Q Consensus 223 ~~~~~~~~~~~~-~lLt~eeE~eL~~~iq~~~~le~~~~~L~------------------~~~gr~pt~~ewA~a~g~-- 281 (442)
|.++-|++.+++ ||||++||++|+++|+.+..+.+...+.. ...+..|...+|+.....
T Consensus 2 DpVr~YLreig~v~LLT~EEEieLAr~Ie~g~~~~~~~~e~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 81 (180)
T d1ku2a2 2 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 81 (180)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCSSCCCTTSCCSSCTTTHHH
T ss_pred CcHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhHHHHhcchhhHHHhhHHHHHH
Confidence 346777777776 99999999999999999876554432221 012334444433322111
Q ss_pred ----------CHHHHHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHH
Q 013472 282 ----------SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351 (442)
Q Consensus 282 ----------deeeL~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTY 351 (442)
....+......|..|+++||.+|++||++||++|.+.|++++||||||+|||++|+++|||++|++|+||
T Consensus 82 ~~~~~~~~~~el~~l~~~~~~~~~a~~~li~~~~~lv~~~a~~~~~~~~~~~dl~q~g~~gl~~a~~~fd~~~g~~f~ty 161 (180)
T d1ku2a2 82 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 161 (180)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCSSSSCHHHHHHHHHHHHHHHHHHCCGGGCSCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1245667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCc
Q 013472 352 VQYWIRKSISKMVARHARG 370 (442)
Q Consensus 352 a~~wIRnaI~r~LRkqsr~ 370 (442)
|+|||+++|.++|++++|+
T Consensus 162 a~~~i~~~i~~~~~~~~rt 180 (180)
T d1ku2a2 162 ATWWIRQAINRAIADQART 180 (180)
T ss_dssp HHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998764
No 2
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=99.85 E-value=1.4e-21 Score=191.22 Aligned_cols=83 Identities=34% Similarity=0.799 Sum_probs=76.9
Q ss_pred HHHHHHHhc----hHHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHH
Q 013472 285 VLKQHLAFG----WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360 (442)
Q Consensus 285 eL~~~l~~G----~~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI 360 (442)
.+.+.+..| ..|+++||.+|++||++||++|.++|++++||+|+|++||++|+++|||.+|++|+|||+||||++|
T Consensus 248 ~i~~~i~~ge~~~~~ak~~~~~~~~~lv~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~ 327 (334)
T d1siga_ 248 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 327 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchHHHHHHhHHHHHHHHHHhccCCCCCHHHHHHhhHHHHHHHHHhcCCCCCCchHhhhHHHHHHHH
Confidence 445566666 4499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 013472 361 SKMVARH 367 (442)
Q Consensus 361 ~r~LRkq 367 (442)
.++|++|
T Consensus 328 ~~~~~~~ 334 (334)
T d1siga_ 328 TRSIADQ 334 (334)
T ss_dssp HHHHHHC
T ss_pred HHHHhCC
Confidence 9999875
No 3
>d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=99.78 E-value=2.5e-19 Score=146.18 Aligned_cols=72 Identities=24% Similarity=0.393 Sum_probs=68.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhCC---CCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHHhh
Q 013472 296 CREELIKSTRPLVLFLARNYRGL---GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367 (442)
Q Consensus 296 Are~LI~~nlrLV~sIAkrY~g~---g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LRkq 367 (442)
.+++||..|++||.++|.+|.++ +++.+||+|+|++||++|+++|||++|.+|+|||.+|||++|++++|+.
T Consensus 11 ~re~li~~~~~LV~~ia~~~~~~~~~~~e~eDL~q~G~igL~~A~~~yd~~~g~~F~tYA~~~Irgai~d~lRk~ 85 (87)
T d1rp3a3 11 EREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSL 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999764 7899999999999999999999999999999999999999999999975
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=99.47 E-value=4.4e-14 Score=117.75 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred CHHHHHHHHHhchH-HHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHH
Q 013472 282 SERVLKQHLAFGWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360 (442)
Q Consensus 282 deeeL~~~l~~G~~-Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI 360 (442)
++++|+.+++.|+. |++.|+..|.+.|+.+|++++++ .+++|++||+++.+|+++.+|++.. +|.+|++.+++|.+
T Consensus 8 tD~~Li~~~~~Gd~~Af~~l~~~y~~~l~~~~~~~~~~-~daeDl~Qe~~l~~~~~~~~~~~~~--~~~~wl~~I~~n~~ 84 (113)
T d1or7a2 8 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 84 (113)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcccccCCC--CHHHHHHHHHHHHH
Confidence 46789999999976 99999999999999999999887 5799999999999999999999753 69999999999999
Q ss_pred HHHHHhhcC
Q 013472 361 SKMVARHAR 369 (442)
Q Consensus 361 ~r~LRkqsr 369 (442)
++++|+.++
T Consensus 85 ~d~~R~~~r 93 (113)
T d1or7a2 85 KNYLVAQGR 93 (113)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999998765
No 5
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=98.99 E-value=2.9e-10 Score=85.92 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=55.2
Q ss_pred eecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCC--CHHHHHHHHHhcccCCCC
Q 013472 371 IKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGL--SLAEIRSASECLRIVGSI 428 (442)
Q Consensus 371 irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGI--S~etVk~~l~~ar~~~SL 428 (442)
||+|.|+.+.++++.++.++|.+++||+||.+|||+.||+ ++++|+.++..++.++||
T Consensus 1 IRlPvH~~e~i~rv~r~~~~l~qe~gRePt~eEiA~~l~~~l~~ekV~~~l~~~~~p~SL 60 (60)
T d1ku2a1 1 IRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 60 (60)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHCSSCCHHHHHHHGGGSSSCCCC
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHccCCCCC
Confidence 6899999999999999999999999999999999999985 588999999999999997
No 6
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=98.98 E-value=3e-10 Score=88.03 Aligned_cols=69 Identities=9% Similarity=-0.040 Sum_probs=64.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCCCCHHhHHHHHHHHHHHhHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Q 013472 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365 (442)
Q Consensus 295 ~Are~LI~~nlrLV~sIAkrY~g~g~d~EDLIQEG~IGLirAieKFDp~kG~rFSTYa~~wIRnaI~r~LR 365 (442)
.+|++++..|.+.|+.+|.+++++..+++|++||.++.+|+..++|++. .+|.+|++.+++|.+++++|
T Consensus 7 ~~f~~~~~~y~~~l~~~~~~~~~d~~~aeDivQd~f~~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R 75 (75)
T d1h3la_ 7 ARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYR 75 (75)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCC--CCHHHHHHHHHHHHHHHHhC
Confidence 3799999999999999999999999999999999999999999999874 46999999999999998764
No 7
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.79 E-value=2.9e-09 Score=79.38 Aligned_cols=55 Identities=31% Similarity=0.446 Sum_probs=52.1
Q ss_pred CceecccccHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 369 RGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 369 r~irlP~~v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.++++|.++.+.+++|.++..+|.+++|+.||.+|||+.||||+++|..++..++
T Consensus 2 g~IrvPr~~~e~~~ki~~~~~~l~q~lgRePT~~EiA~~l~~~~e~V~~~l~a~r 56 (57)
T d1l0oc_ 2 GTVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVR 56 (57)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCEeCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999987664
No 8
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=98.46 E-value=1.4e-08 Score=79.27 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc--cCCCCccccCCC
Q 013472 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR--IVGSIDQKIGDC 435 (442)
Q Consensus 377 v~e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar--~~~SLD~~v~~~ 435 (442)
+.+..++|.++...|.+++||.||.+|||+.|||++++|+.++..+. .++|||.+++++
T Consensus 5 ~r~~~~ki~~a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~~~~~~~~~SLD~~~~d~ 65 (77)
T d1rp3a1 5 VREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDF 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHCcCHHHHHHHHHHHhcCCceecccCccCC
Confidence 45778899999999999999999999999999999999999987544 779999987644
No 9
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=96.20 E-value=0.0058 Score=44.31 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHHHhc
Q 013472 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293 (442)
Q Consensus 253 ~~le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l~~G 293 (442)
.++.++..+|..++||+||.+|.|+++|++.+++...+..+
T Consensus 15 ~ki~~~~~~l~q~lgRePT~~EiA~~l~~~~e~V~~~l~a~ 55 (57)
T d1l0oc_ 15 NKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAV 55 (57)
T ss_dssp HHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34677888999999999999999999999999988766543
No 10
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=95.21 E-value=0.0079 Score=44.37 Aligned_cols=29 Identities=21% Similarity=-0.040 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
-.+.|++|||+.+|+|+++|+..+++++.
T Consensus 32 ~~~~s~~eIA~~lgis~~tv~~~l~ra~~ 60 (68)
T d1or7a1 32 LDGLSYEEIAAIMDCPVGTVRSRIFRARE 60 (68)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47789999999999999999999998864
No 11
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=95.04 E-value=0.021 Score=43.10 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHH
Q 013472 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHL 290 (442)
Q Consensus 253 ~~le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l 290 (442)
.+++++...|..++||+||.+|.|..+||+.+++...+
T Consensus 10 ~ki~~a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l 47 (77)
T d1rp3a1 10 RRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTL 47 (77)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHHHHCcCHHHHHHHH
Confidence 45888999999999999999999999999998887654
No 12
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=94.51 E-value=0.011 Score=43.58 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=26.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+..+.|++|||+.||+|+.+|+..+++++.
T Consensus 34 ~~~~~s~~eIA~~lgis~~tv~~~~~ra~~ 63 (71)
T d1rp3a2 34 FYEELPAKEVAKILETSVSRVSQLKAKALE 63 (71)
T ss_dssp HTSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HhHhCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356889999999999999999999888763
No 13
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=92.83 E-value=0.11 Score=38.78 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCC-CHHHHHHHHHhc
Q 013472 379 REISKIQKARKALTNSHGKYPEDIEIAKYTGL-SLAEIRSASECL 422 (442)
Q Consensus 379 e~i~kI~ka~~~L~~elgr~PS~eEIAe~LGI-S~etVk~~l~~a 422 (442)
....+|-.++.....+.|..||..|||+.+|+ |..+|...+.+.
T Consensus 5 ~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~L 49 (71)
T d1jhfa1 5 ARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44567778888888889999999999999999 799999887654
No 14
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=92.42 E-value=0.16 Score=36.83 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHcCC--CHHHHHHH
Q 013472 252 VANLERIKTTLEKESGKAASLNCWAQAAGV--SERVLKQH 289 (442)
Q Consensus 252 ~~~le~~~~~L~~~~gr~pt~~ewA~a~g~--deeeL~~~ 289 (442)
+-++.++..+|..++||+||.+|.|+++|+ +.+.+...
T Consensus 11 i~rv~r~~~~l~qe~gRePt~eEiA~~l~~~l~~ekV~~~ 50 (60)
T d1ku2a1 11 INKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEET 50 (60)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHH
Confidence 346677888999999999999999999974 55555443
No 15
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=88.94 E-value=0.25 Score=39.75 Aligned_cols=31 Identities=13% Similarity=-0.206 Sum_probs=27.4
Q ss_pred HcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 394 elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
.+-.+.|..|||+.||||.++|+..+++++.
T Consensus 30 ~~~e~ls~~EIA~~lgiS~~aV~~~l~Ra~~ 60 (106)
T d1xsva_ 30 FYLEDYSLSEIADTFNVSRQAVYDNIRRTGD 60 (106)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3457889999999999999999999988874
No 16
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=88.93 E-value=0.19 Score=40.41 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=26.6
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+..+.|..|||+.||||+++|+..+++++.
T Consensus 29 y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~ 58 (106)
T d1s7oa_ 29 YADDYSLAEIADEFGVSRQAVYDNIKRTEK 58 (106)
T ss_dssp HHTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346789999999999999999999988864
No 17
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=84.35 E-value=0.78 Score=32.99 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=27.2
Q ss_pred HHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 391 LTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 391 L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..-...+.|..|||+.||||+.+|+..+....
T Consensus 12 vl~l~~~G~s~~eIA~~l~iS~~TV~~~~~~i~ 44 (65)
T d1l3la1 12 YLRWIAVGKTMEEIADVEGVKYNSVRVKLREAM 44 (65)
T ss_dssp HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334457788999999999999999999877554
No 18
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=82.78 E-value=0.95 Score=32.58 Aligned_cols=32 Identities=16% Similarity=-0.086 Sum_probs=26.4
Q ss_pred HHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 392 TNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 392 ~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..-...+.|..|||+.||+++.+|+..+....
T Consensus 13 l~l~~~G~s~~eIA~~L~is~~TV~~~~~~i~ 44 (67)
T d1fsea_ 13 FELLVQDKTTKEIASELFISEKTVRNHISNAM 44 (67)
T ss_dssp HHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33456788999999999999999999877554
No 19
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=81.02 E-value=0.91 Score=33.18 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 388 RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 388 ~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
..++..-+..+.+..|||+.||||+.+|+..+.....
T Consensus 17 E~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~ 53 (70)
T d1yioa1 17 EQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQ 53 (70)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444567889999999999999999998776553
No 20
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=79.77 E-value=1.1 Score=32.37 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=24.6
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..+.|..|||+.||||+.+|+..+....
T Consensus 18 l~~G~s~~eIA~~l~iS~~TV~~~~~~i~ 46 (67)
T d1a04a1 18 IAQGLPNKMIARRLDITESTVKVHVKHML 46 (67)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34578999999999999999999876554
No 21
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=78.95 E-value=2.4 Score=30.50 Aligned_cols=41 Identities=20% Similarity=0.107 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 383 KIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 383 kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+.+.+..+..+.| ..|+..|||+.+|+++..++.+++..-
T Consensus 7 ~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~ 48 (64)
T d1lvaa3 7 KLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLV 48 (64)
T ss_dssp HHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33344444444444 889999999999999999999987654
No 22
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=77.26 E-value=2.1 Score=30.70 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+...|..|||+.+|||.+.|+.+...+
T Consensus 26 ~~~~tl~eIa~~lgiS~erVrqi~~~a 52 (61)
T d1ku3a_ 26 GREHTLEEVGAYFGVTRERIRQIENKA 52 (61)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 466799999999999999999886544
No 23
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=73.23 E-value=2.2 Score=29.01 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.|.++..-+.+.+.+.+|.++||+.+|++...+....+..
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~ 43 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 43 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4677777777778889999999999999999998876543
No 24
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=72.31 E-value=1.7 Score=32.00 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...|.+|||+.+|||.+.|+.+...|
T Consensus 24 ~~~tl~eI~~~lgiSrerVrqie~~a 49 (68)
T d2p7vb1 24 TDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45699999999999999999886654
No 25
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=67.30 E-value=5.7 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+..|||+.+|+|+.+|...++...
T Consensus 19 r~s~~~iA~~lgis~~tv~~Ri~~L~ 44 (63)
T d2cfxa1 19 RLSMRELGRKIKLSPPSVTERVRQLE 44 (63)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34899999999999999999887553
No 26
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=66.26 E-value=5.4 Score=29.03 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|.+|||..+|++.++|-..++..+
T Consensus 30 ~lt~~elA~~~g~sretvsr~l~~l~ 55 (80)
T d3e5ua1 30 PLSQKSIGEITGVHHVTVSRVLASLK 55 (80)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46999999999999999999987665
No 27
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=65.71 E-value=3.7 Score=27.74 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHHH
Q 013472 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291 (442)
Q Consensus 254 ~le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l~ 291 (442)
.++++..-+++....+++.+++|+.+|++...|.+..+
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk 41 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666777788889999999999999999988776544
No 28
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=65.51 E-value=6.6 Score=27.29 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..++.|||+.+|+|+.+|...++...
T Consensus 17 r~s~~eiA~~l~ls~~~v~~Ri~~L~ 42 (60)
T d2cyya1 17 KAPLREISKITGLAESTIHERIRKLR 42 (60)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34899999999999999999887553
No 29
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=64.91 E-value=6.5 Score=27.65 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|..|||+.+|+|..+|...+++..
T Consensus 19 r~s~~eiA~~l~ls~~~v~~Ri~rL~ 44 (63)
T d2cg4a1 19 RTAYAELAKQFGVSPETIHVRVEKMK 44 (63)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35899999999999999999887654
No 30
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=62.67 E-value=7.4 Score=27.16 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..|+.|||+.+|+|+.+|...++...
T Consensus 17 r~s~~~lA~~~gls~~~v~~Ri~~L~ 42 (60)
T d1i1ga1 17 RTPFTEIAKKLGISETAVRKRVKALE 42 (60)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45899999999999999999987553
No 31
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=62.49 E-value=3.2 Score=31.78 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
...|..|||+.+|||.+.|+.+...+
T Consensus 37 ~~~tl~eI~~~lgiSrERVRQie~~a 62 (87)
T d1ttya_ 37 KPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 56699999999999999999886544
No 32
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=62.10 E-value=7.2 Score=28.18 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+|.+|||..+|++.++|-..++..+
T Consensus 29 ~lt~~eLA~~~G~sretvsr~L~~l~ 54 (81)
T d2gaua1 29 YLSREELATLSNMTVSNAIRTLSTFV 54 (81)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45999999999999999999987665
No 33
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=60.56 E-value=5.1 Score=30.91 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+.+.|++|||+.+|+...+|+.+|...
T Consensus 31 ~~evtDe~iA~~tgi~in~VRk~Ly~L 57 (88)
T d1q1ha_ 31 GTEMTDEEIANQLNIKVNDVRKKLNLL 57 (88)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 567899999999999999999998643
No 34
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=60.05 E-value=4 Score=27.64 Aligned_cols=40 Identities=13% Similarity=-0.059 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 382 ~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
..|+++..-+.+.+....|.++||+.+|||...+....+.
T Consensus 3 ~ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~ 42 (54)
T d1d5ya1 3 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (54)
T ss_dssp HHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3466677777777788899999999999999999887654
No 35
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=59.75 E-value=3.4 Score=31.16 Aligned_cols=28 Identities=25% Similarity=0.055 Sum_probs=23.8
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+.+..|||+.|++|+.+|+..+....
T Consensus 35 ~~G~s~~eIA~~l~iS~~TV~~~~~~i~ 62 (87)
T d1p4wa_ 35 AEGFLVTEIAKKLNRSIKTISSQKKSAM 62 (87)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4467999999999999999999876554
No 36
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=58.27 E-value=6.8 Score=27.91 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..+|..+.|...|..+||+..|++..++...
T Consensus 4 ~~Il~aA~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~ 40 (70)
T d2hkua1 4 DALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYY 40 (70)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchHHHHHHHHCCChhhHHhc
Confidence 4556666677777788899999999999999998654
No 37
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=57.25 E-value=5.7 Score=28.21 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|.+|||..+|++.++|-..++..+
T Consensus 30 lt~~~lA~~~G~sRetvsr~L~~l~ 54 (69)
T d1i5za1 30 ITRQEIGQIVGCSRETVGRILKMLE 54 (69)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5999999999999999999987655
No 38
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=56.64 E-value=7.8 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHH
Q 013472 382 SKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 382 ~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~ 417 (442)
.+|-++..++..+.| ..|..+||+.+|++...+..
T Consensus 4 ~~Il~aa~~l~~~~G-~~ti~~Ia~~agvs~~~iY~ 38 (65)
T d2g7ga1 4 ERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYH 38 (65)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHhCccccchhh
Confidence 345556666666778 89999999999999999854
No 39
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=55.79 E-value=11 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHhCC--CHHHHHHHHHhcc
Q 013472 381 ISKIQKARKALTNSHGKYPEDIEIAKYTGL--SLAEIRSASECLR 423 (442)
Q Consensus 381 i~kI~ka~~~L~~elgr~PS~eEIAe~LGI--S~etVk~~l~~ar 423 (442)
...|-+++-+...+.|..|+..+||+.+|+ |..+|++.|....
T Consensus 6 q~~IL~~Ive~y~~~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE 50 (87)
T d1stza1 6 QRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLE 50 (87)
T ss_dssp HHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 345556666666678999999999999665 7999999877543
No 40
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.59 E-value=4.4 Score=28.87 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+.+|..+||+..|+|..+|-.+++...
T Consensus 1 k~~Ti~diA~~agvS~sTVSr~l~~~~ 27 (59)
T d1efaa1 1 KPVTLYDVAEYAGVSYQTVSRVVNQAS 27 (59)
T ss_dssp CCCCHHHHHHTTTSCHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCC
Confidence 358999999999999999999986543
No 41
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=54.97 E-value=9.8 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..+....|.+ .....|..|||+.+|+|..+|+.-+...
T Consensus 9 ~~~Il~~L~~-~~~~vs~~~La~~l~VS~~TI~rdi~~L 46 (65)
T d1j5ya1 9 LKSIVRILER-SKEPVSGAQLAEELSVSRQVIVQDIAYL 46 (65)
T ss_dssp HHHHHHHHHH-CSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCcHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444432 2445699999999999999999876543
No 42
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=54.77 E-value=6.9 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=25.2
Q ss_pred HcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 394 SHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 394 elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..+...+..|||+.+|+|..++..++....
T Consensus 16 ~~~~~~s~~eia~~~~~~~st~~rll~tL~ 45 (75)
T d1mkma1 16 KNPGDVSVSEIAEKFNMSVSNAYKYMVVLE 45 (75)
T ss_dssp HCSSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346678999999999999999999977543
No 43
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=54.37 E-value=5 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-|+..|||+.+|++..+|+.++...
T Consensus 26 ~LPs~~eLa~~~~vSr~tvr~Al~~L 51 (74)
T d1hw1a1 26 ILPAERELSELIGVTRTTLREVLQRL 51 (74)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 56799999999999999999998754
No 44
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=54.12 E-value=9.6 Score=28.27 Aligned_cols=41 Identities=5% Similarity=0.050 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
..-+...+|.++--...|-+|||+.+|++..+|+.-+....
T Consensus 10 ~Ylr~L~~l~~~g~~~vSS~~La~~~gi~~~qVRKDls~fG 50 (74)
T d2dt5a1 10 TYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFG 50 (74)
T ss_dssp HHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCeeEcHHHHHHHHCcCHHHHHHHHHHhc
Confidence 34455566655544567999999999999999998776553
No 45
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=53.22 E-value=3.7 Score=28.39 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=31.0
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcccCCCCccccCCCCC
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLN 437 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar~~~SLD~~v~~~~d 437 (442)
.|.+++|+.+|+|++++-.-+..|..+.|-++.|.+.+-
T Consensus 3 vTVk~lA~~v~~~vd~Ll~Ql~~AGl~ks~~D~vt~~eK 41 (49)
T d1nd9a_ 3 VTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEK 41 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHHTSCCSSSSCEETTGG
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHcCCCCCCCCccCHHHH
Confidence 477899999999999999998888765566666665543
No 46
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=53.15 E-value=17 Score=25.51 Aligned_cols=39 Identities=26% Similarity=0.074 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|..+..++..+.| ...|..+||+..|++...+...
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~ 44 (69)
T d2fq4a1 5 TQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 44556666666666666 6789999999999999998764
No 47
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=52.90 E-value=7.8 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.+.|.+|+|+.+|++..+|..+-.
T Consensus 11 ~gltQ~elA~~lGvs~~tvs~~E~ 34 (62)
T d2ppxa1 11 LKLTQEEFSARYHIPLGTLRDWEQ 34 (62)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHC
Confidence 357999999999999999998765
No 48
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=52.53 E-value=5 Score=29.25 Aligned_cols=26 Identities=27% Similarity=0.075 Sum_probs=23.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+|.+|||..+|++.++|-..+...+
T Consensus 30 ~~t~~eiA~~lG~sretvsr~l~~l~ 55 (80)
T d1ft9a1 30 DFTVEEIANLIGSSRQTTSTALNSLI 55 (80)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46999999999999999999988665
No 49
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=52.51 E-value=18 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.-+++-.|..+.+ ..+..+||+.||++..+|-..++...
T Consensus 8 YLk~I~~l~~~~~-~v~~~~iA~~L~vs~~SVs~mikrL~ 46 (61)
T d2ev0a1 8 YIEQIYMLIEEKG-YARVSDIAEALAVHPSSVTKMVQKLD 46 (61)
T ss_dssp HHHHHHHHHHHHS-SCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CccHHHHHHHhCCCchhHHHHHHHHH
Confidence 3445556665544 67899999999999999999887553
No 50
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=52.28 E-value=17 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 5 rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~ 44 (72)
T d1pb6a1 5 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccCHHHHHHHhCCChHHHHHH
Confidence 34556666666666666 6689999999999999998754
No 51
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=52.23 E-value=5.7 Score=29.02 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..|||+.+|+|..+|+.++...
T Consensus 21 ~LPse~~La~~~~vSr~tvr~Al~~L 46 (78)
T d3bwga1 21 KLPVLETLMAQFEVSKSTITKSLELL 46 (78)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56899999999999999999997743
No 52
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=52.15 E-value=13 Score=25.99 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|..+||+.+|++..++...
T Consensus 6 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 43 (73)
T d1t56a1 6 LAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFY 43 (73)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 456666666666666 5789999999999999998764
No 53
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=51.20 E-value=12 Score=28.58 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 387 ARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 387 a~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+...|. ++| .|.++||+.+|.|...|.+.++...
T Consensus 11 a~~~L~-e~g--~t~~~iA~~~Gks~~~V~~~LrLl~ 44 (93)
T d1vz0a1 11 GYQALL-EMG--LTQEEVARRVGKARSTVANALRLLQ 44 (93)
T ss_dssp HHHHHH-HTT--CCHHHHHHHHTCCHHHHHHHHHGGG
T ss_pred HHHHHH-HcC--CCHHHHHHHHccchHHHHHHHHHHH
Confidence 445554 344 6999999999999999999987655
No 54
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=50.87 E-value=6.2 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=26.2
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|+..|.+.||..+|.|+++|+.++..+.
T Consensus 13 ~G~PVs~~~LA~alg~~~~eV~~aL~~~p 41 (60)
T d1s6la1 13 KGRPVSRTTLAGILDWPAERVAAVLEQAT 41 (60)
T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHHhCC
Confidence 48899999999999999999999997654
No 55
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=50.29 E-value=22 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 383 KIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 383 kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++-+.++++..+ ++.|.+++|+.+|++..+|..+.+
T Consensus 9 ~~g~~ik~~R~~--~gltq~~lA~~~gis~~~i~~~E~ 44 (69)
T d1y7ya1 9 KFGQRLRELRTA--KGLSQETLAFLSGLDRSYVGGVER 44 (69)
T ss_dssp HHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHH--cCCCHHHHHhHhCCCHHHHHHHHC
Confidence 344445555443 456999999999999999988764
No 56
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=49.98 E-value=9.4 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
++.|.+|+|+.+||+..+|..+.+-.+
T Consensus 13 ~gltq~~la~~~gis~~~i~~~E~g~~ 39 (68)
T d1b0na2 13 KGYSLSELAEKAGVAKSYLSSIERNLQ 39 (68)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcCCC
Confidence 567999999999999999998876444
No 57
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=48.28 E-value=21 Score=25.35 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+...+..+.| ...|..+||+.+|++...+...
T Consensus 5 tre~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~ 44 (79)
T d2fbqa1 5 TVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYH 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccHHHHHHHHCcChhHHHHH
Confidence 34556666666666656 6789999999999999998764
No 58
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=47.93 E-value=20 Score=25.16 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|..+||+.+|++..++...
T Consensus 7 ~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 44 (74)
T d1v7ba1 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYH 44 (74)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHhCcCcchHhhh
Confidence 345555556555555 7789999999999999998654
No 59
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=47.81 E-value=9.7 Score=25.71 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=19.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHH
Q 013472 398 YPEDIEIAKYTGLSLAEIRSAS 419 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l 419 (442)
+.+..+||..+|++..++...+
T Consensus 21 G~s~~~iA~~~gVSr~TiYry~ 42 (47)
T d1ijwc_ 21 GHPRQQLAIIFGIGVSTLYRYF 42 (47)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHS
T ss_pred CCCHHHHHHHHCcCHHHHHhhC
Confidence 4589999999999999998764
No 60
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=47.05 E-value=20 Score=25.49 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 378 NREISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 378 ~e~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
.+...+|..+..++..+.| ...|..+||+..|++...+..
T Consensus 8 ~~~r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~ 48 (79)
T d2oi8a1 8 TQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCccccCHHHHHHHhCCCCCchhh
Confidence 3455667777777777777 468999999999999999854
No 61
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=46.43 E-value=7.5 Score=27.30 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+.|..+||+..|+|..+|-.+++..
T Consensus 1 NvTi~dvA~~agvS~~TVSr~Ln~~ 25 (57)
T d2hsga1 1 NVTIYDVAREASVSMATVSRVVNGN 25 (57)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTC
T ss_pred CcCHHHHHHHHCcCHHHHHHHhCCC
Confidence 3688999999999999999998754
No 62
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=45.66 E-value=19 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+...+..+.| ...|..+||+.+||+.+++...
T Consensus 4 ~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~ 41 (71)
T d1jt6a1 4 DKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYH 41 (71)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHHCcCHhHHHHH
Confidence 345555556655666 6789999999999999998754
No 63
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=45.64 E-value=24 Score=24.56 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-.+..++..+.| ...|..+||+..||+..++...
T Consensus 7 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~ 45 (75)
T d3c07a1 7 RALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYY 45 (75)
T ss_dssp HHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 4456666667666666 7789999999999999998654
No 64
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=45.40 E-value=24 Score=24.98 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..++..+.| ...|..+||+.+||+..++...
T Consensus 5 tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~ 44 (73)
T d2fx0a1 5 TMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYY 44 (73)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCcHHHHHHHHCcChhHHHHH
Confidence 34556666677766666 5689999999999999999764
No 65
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.13 E-value=9 Score=26.97 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=24.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+...|.+|||+.+|+|..+|...+...+
T Consensus 17 ~~~~s~~eLa~~l~vS~~ti~r~i~~L~ 44 (63)
T d1biaa1 17 GEFHSGEQLGETLGMSRAAINKHIQTLR 44 (63)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5667999999999999999998876544
No 66
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=44.96 E-value=18 Score=25.65 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.-+++..|... +..+...+||+.||++..+|-.+++...
T Consensus 10 YL~~I~~L~~~-~~~v~~~~iA~~L~vs~~SVt~mvkrL~ 48 (63)
T d2isya1 10 YLRTIYDLEEE-GVTPLRARIAERLDQSGPTVSQTVSRME 48 (63)
T ss_dssp HHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCcHHHHHHHhCCCchhHHHHHHHHH
Confidence 34455566554 5568999999999999999998877543
No 67
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=44.89 E-value=14 Score=24.78 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=20.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
....-+||+.|||+...|..++.-
T Consensus 18 G~gat~IAk~lgI~R~SVYR~L~~ 41 (43)
T d1gdta1 18 GLGASHISKTMNIARSTVYKVINE 41 (43)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHhh
Confidence 456679999999999999998864
No 68
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=44.53 E-value=3.7 Score=31.03 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHcCCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 393 NSHGKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 393 ~elgr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
...+...|..|||+..|+++.++....+...
T Consensus 55 r~~~~~~t~~eIa~~~~vs~~tI~~~yk~l~ 85 (95)
T d1aisb2 55 LLEGEKRTQREVAEVARVTEVTVRNRYKELV 85 (95)
T ss_dssp HHTTCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456777999999999999999988866443
No 69
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.12 E-value=8.6 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.3
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 400 EDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~ar 423 (442)
|..+||+..|+|..+|-.+++...
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~ 25 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTR 25 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 789999999999999999997543
No 70
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=43.68 E-value=15 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
..|..|||+.+|+|..+|..++...
T Consensus 20 ~~sr~eLa~~~glS~~Tv~~~l~~L 44 (71)
T d1z05a1 20 PISRIDLSKESELAPASITKITREL 44 (71)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999887643
No 71
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=43.32 E-value=9.3 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.+|.+|||+.+|++.++|-..+...+
T Consensus 29 ~lt~~elA~~lg~sr~tv~r~L~~l~ 54 (82)
T d2zcwa1 29 KATHDELAAAVGSVRETVTKVIGELA 54 (82)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45999999999999999999887654
No 72
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=43.01 E-value=12 Score=26.64 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIR 416 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk 416 (442)
..+|-.+...+..+.| ...|..+||+..||+..++.
T Consensus 9 r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y 45 (76)
T d2fd5a1 9 RARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFY 45 (76)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGG
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHhCCCccchh
Confidence 3455555566666656 67899999999999998774
No 73
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=42.35 E-value=15 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+..+|..+.|-..|..+||+..|++...+...
T Consensus 13 tr~~Il~aa~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~ 51 (88)
T d1t33a1 13 AKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYY 51 (88)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCHHHHHHHhCCChhhhhcc
Confidence 345677777787777787779999999999999998654
No 74
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=41.93 E-value=33 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHhCCCCChHHHHHHcCC-CHH
Q 013472 264 KESGKAASLNCWAQAAGV-SER 284 (442)
Q Consensus 264 ~~~gr~pt~~ewA~a~g~-dee 284 (442)
...|.+||..|.|+++|+ +..
T Consensus 19 ~~~G~~Ps~rei~~~~g~~S~s 40 (71)
T d1jhfa1 19 SQTGMPPTRAEIAQRLGFRSPN 40 (71)
T ss_dssp HHHSSCCCHHHHHHHTTCSSHH
T ss_pred HHhCCCCCHHHHHHHcCCCCHH
Confidence 345999999999999998 443
No 75
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=41.87 E-value=33 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+-..++.+... ++.|.+++|+.+|++..+|..+..-
T Consensus 11 ~g~~ik~~R~~--~gltq~~lA~~~gis~~~i~~~e~g 46 (77)
T d2b5aa1 11 FGRTLKKIRTQ--KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34444444443 4569999999999999999988653
No 76
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.85 E-value=48 Score=25.42 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+..++..+||+.+|++..+|-.++...
T Consensus 41 ~~~~t~~~la~~~~~~~~~vs~~v~~L 67 (137)
T d2fbha1 41 RDSPTQRELAQSVGVEGPTLARLLDGL 67 (137)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCCCHHHHHHHHHHH
Confidence 446899999999999999998887654
No 77
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.79 E-value=12 Score=27.03 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
|...+..|||..+||+..+|..++..-
T Consensus 23 g~k~sq~eIA~~fGv~~STvs~IlKnK 49 (66)
T d1hlva1 23 NPDLRKGEIARRFNIPPSTLSTILKNK 49 (66)
T ss_dssp CTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred CCcchHHHHHHHhCCChhHHHHHHHHH
Confidence 555678999999999999999998754
No 78
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=41.66 E-value=25 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 384 I~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
|..|. ++..+.| ...|..+||+..|++.+.+...
T Consensus 6 L~aA~-~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~ 40 (69)
T d2i10a1 6 LQTAM-ELFWRQGYEGTSITDLTKALGINPPSLYAA 40 (69)
T ss_dssp HHHHH-HHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHH-HHHHHHCcccCCHHHHHHHhCCChhHHHHH
Confidence 34444 4555555 6789999999999999998764
No 79
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=41.19 E-value=24 Score=24.70 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.++.|.+|+|+.+|++...|..+.+
T Consensus 17 ~~gltq~elA~~~gv~~~~is~ie~ 41 (69)
T d2a6ca1 17 NSGLTQFKAAELLGVTQPRVSDLMR 41 (69)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHcCHhHHHHHHc
Confidence 4678999999999999999998875
No 80
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=41.15 E-value=30 Score=25.31 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
...++.+.......+. +.|.+++|+.+|++...|..+.+
T Consensus 9 ~~~~l~~~i~~~R~~~--gltq~~lA~~lgis~~~is~~E~ 47 (87)
T d1lmb3_ 9 DARRLKAIYEKKKNEL--GLSQESVADKMGMGQSGVGALFN 47 (87)
T ss_dssp HHHHHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHhCccHHHHHHHHh
Confidence 3445555555555444 46999999999999999988764
No 81
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=41.07 E-value=24 Score=24.71 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
..+|-.+..++..+.| ...|..+||+..|++..++...
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~ 44 (74)
T d2g7sa1 6 ADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHH 44 (74)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHHCcCcchHHHH
Confidence 3456666666666667 6789999999999999998654
No 82
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=40.76 E-value=17 Score=28.02 Aligned_cols=31 Identities=29% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcccCCCC
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~~~SL 428 (442)
+.|.+|||+.+|.+...|..++..+..|-.+
T Consensus 30 g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v 60 (114)
T d1r71a_ 30 GKKKGDIAKEIGKSPAFITQHVTLLDLPEKI 60 (114)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSCCHHH
T ss_pred CCCHHHHHHHHCCcHHHHHHHHHHhCCCHHH
Confidence 4599999999999999999999877754333
No 83
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=40.73 E-value=26 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-.+...+..+.| ...|..+||+..|++..++...
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~ 47 (78)
T d2o7ta1 8 RREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 47 (78)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHH
Confidence 34566666667766666 6789999999999999998653
No 84
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=40.54 E-value=25 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 381 ISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 381 i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
..+|-.+...+..+.| ...|..+||+..||+..++..
T Consensus 13 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (81)
T d1rkta1 13 QAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCcCHHHHHH
Confidence 3456666666666666 678999999999999999854
No 85
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=40.46 E-value=20 Score=25.76 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.+.|..|+|+.||++..+|...-.
T Consensus 13 ~gltQ~elA~~LGvs~~ti~~yE~ 36 (67)
T d2auwa1 13 NNLSLTTAAEALGISRRMVSYYRT 36 (67)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 467999999999999999988754
No 86
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=40.44 E-value=9.6 Score=27.55 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=22.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.|.+|||..+|++.++|-..++..+
T Consensus 28 lt~~elA~~lg~sr~tvsr~l~~l~ 52 (73)
T d1zyba1 28 VKMDDLARCLDDTRLNISKTLNELQ 52 (73)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5899999999999999999987655
No 87
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=40.38 E-value=28 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.|.+|+|+.+|++..+|..+.+-
T Consensus 15 ~gltq~~lA~~~gvs~~ti~~~E~g 39 (65)
T d2croa_ 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (65)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHhHHHHHHCC
Confidence 3569999999999999999997653
No 88
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=40.04 E-value=6.2 Score=28.24 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-++..++..+.| ...|..+||+.+|+|.+++...
T Consensus 6 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~ 43 (75)
T d2id6a1 6 DAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHY 43 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHH
Confidence 455556666666656 5689999999999999998754
No 89
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=40.03 E-value=27 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+...+..+.| ...|..+||+.+|++..++...
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~ 46 (68)
T d2id3a1 9 EAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 46 (68)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 455556666666666 6789999999999999998764
No 90
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=40.01 E-value=25 Score=24.10 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
+.|..++|+.+|++..+|..+..-
T Consensus 16 g~tq~~lA~~~gvs~~~i~~~e~g 39 (66)
T d2r1jl1 16 KIRQAALGKMVGVSNVAISQWERS 39 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 569999999999999999988754
No 91
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=39.88 E-value=22 Score=24.54 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|..+||+..|++...+...
T Consensus 4 e~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~ 41 (69)
T d2np5a1 4 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHH 41 (69)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHH
Confidence 355666666666667 6789999999999999998654
No 92
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=39.84 E-value=23 Score=24.60 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHH
Q 013472 383 KIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIR 416 (442)
Q Consensus 383 kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk 416 (442)
+|.++..++..+.| ...|..+||+.+|++...+.
T Consensus 8 ~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y 42 (68)
T d2g7la1 8 WIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLY 42 (68)
T ss_dssp HHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHhHhh
Confidence 34555555555555 67899999999999999874
No 93
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=38.26 E-value=38 Score=24.82 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHhC--CCHHHHHHHHH
Q 013472 380 EISKIQKARKALTNSHGKYPEDIEIAKYTG--LSLAEIRSASE 420 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elgr~PS~eEIAe~LG--IS~etVk~~l~ 420 (442)
....+..++..+.=.-++..|..+||+.++ ++...|+.++.
T Consensus 4 ~~~~l~~~IEAlLFas~~Pls~~~L~~~l~~~~~~~~i~~~l~ 46 (85)
T d1t6sa1 4 QRQQLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVD 46 (85)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHccCCCHHHHHHHHH
Confidence 334555555554444588889999999996 78888988864
No 94
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=38.20 E-value=24 Score=24.84 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
...+|-.+..++..+.| ...|..+||+.+|+|...+..
T Consensus 6 tr~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~ 44 (75)
T d2hyja1 6 TRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHK 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcccCcHHHHHHHHCcCHHHHHH
Confidence 34556666666666666 668999999999999999854
No 95
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=37.88 E-value=31 Score=24.03 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|...||+..|++.+.+...
T Consensus 8 ~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~ 45 (71)
T d1ui5a1 8 ATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFH 45 (71)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHHCcCHhHHHHH
Confidence 345555555555666 6679999999999999998754
No 96
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.57 E-value=8.6 Score=27.10 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.1
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 399 PEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
.|..+||+.+|+|..+|-.+++-.
T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~ 24 (59)
T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGK 24 (59)
T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 378999999999999999999743
No 97
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=37.53 E-value=31 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 380 EISKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 380 ~i~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
...+|-++..++..+.| ...|..+||+.+|++..++...
T Consensus 7 ~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~ 46 (77)
T d2gfna1 7 RRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHY 46 (77)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccCHHHHHHHHCCCHHHHHHH
Confidence 34556666666666666 6789999999999999998654
No 98
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=37.44 E-value=21 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
.+|-.+..++..+.| ...|..+||+.+|++...+..
T Consensus 6 e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~ 42 (72)
T d1zk8a1 6 QKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 42 (72)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHhCCCHHHHHH
Confidence 345555555555555 678999999999999988743
No 99
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.34 E-value=14 Score=24.57 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHcCCCHHHHHHHHH
Q 013472 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291 (442)
Q Consensus 255 le~~~~~L~~~~gr~pt~~ewA~a~g~deeeL~~~l~ 291 (442)
++++..-+++....+.+++++|+.+||+...|.+..+
T Consensus 5 i~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk 41 (54)
T d1d5ya1 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4556666777888999999999999999988776544
No 100
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.05 E-value=33 Score=23.57 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 383 KIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 383 kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
+|-.+..++..+.| ...|..+||+.+|++.+++...
T Consensus 4 ~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~ 40 (70)
T d2gena1 4 EILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHH 40 (70)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 34444555555555 6789999999999999998754
No 101
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=36.69 E-value=38 Score=23.42 Aligned_cols=37 Identities=22% Similarity=0.036 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|..+||+..|+|...+...
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~ 42 (68)
T d2d6ya1 5 ARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 42 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHHCcchhHHHHH
Confidence 455556666666666 6689999999999999998754
No 102
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=36.65 E-value=29 Score=24.04 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|..+||+..|++...+...
T Consensus 4 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~ 41 (72)
T d1vi0a1 4 MQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLY 41 (72)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHCcCHHHHHHH
Confidence 345555566666666 6789999999999999998654
No 103
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=36.63 E-value=28 Score=26.61 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=21.7
Q ss_pred CCcHHHHHHHhCCC-HHHHHHHHHhcc
Q 013472 398 YPEDIEIAKYTGLS-LAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~eEIAe~LGIS-~etVk~~l~~ar 423 (442)
.+|.+|||..+|++ .++|-.+++..+
T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~ 57 (100)
T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIISKLK 57 (100)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCchHHHHHHHHHHHH
Confidence 36999999999996 899988877554
No 104
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=36.34 E-value=39 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|.+|+|+.+|++...|..+.+
T Consensus 20 ~g~sq~~lA~~~gis~~~i~~~E~ 43 (79)
T d1y9qa1 20 RGLSLDATAQLTGVSKAMLGQIER 43 (79)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcchhHHHHHHc
Confidence 467999999999999999998865
No 105
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=36.21 E-value=28 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
++.|.+|+|+.+|++...|..+..
T Consensus 13 ~g~sq~elA~~~gvs~~~is~~E~ 36 (63)
T d1r69a_ 13 LGLNQAELAQKVGTTQQSIEQLEN 36 (63)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCcHHHHHHHhCcCHHHHHHHHC
Confidence 467999999999999999998865
No 106
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=36.10 E-value=53 Score=22.81 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=20.5
Q ss_pred HHHhCCCCChHHHHHHcCCCHHHHHH
Q 013472 263 EKESGKAASLNCWAQAAGVSERVLKQ 288 (442)
Q Consensus 263 ~~~~gr~pt~~ewA~a~g~deeeL~~ 288 (442)
.+.--.+|+..+.|+..|+++.++..
T Consensus 17 ~~~g~~PP~vrdl~~~l~~~e~~~~~ 42 (64)
T d1lvaa3 17 RVSRWQPPSFKEVAGSFNLDPSELEE 42 (64)
T ss_dssp HHHTTSCCBHHHHHHHTTCCHHHHHH
T ss_pred HHcCCCCCcHHHHHHHhCCCHHHHHH
Confidence 33334899999999999999877654
No 107
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=35.52 E-value=15 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
|..++..|||+.+|++..+|+.++...
T Consensus 23 G~~l~~~~La~~~~vSr~tvr~Al~~L 49 (69)
T d2hs5a1 23 GARLSEPDICAALDVSRNTVREAFQIL 49 (69)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 333457999999999999999998754
No 108
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=35.39 E-value=16 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
++.|..|+|+.+||+..+|..+.+-
T Consensus 13 ~g~tq~elA~~~gis~~~is~~e~g 37 (66)
T d1utxa_ 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHhcccCHHHHHHHHcC
Confidence 4679999999999999999887653
No 109
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=34.80 E-value=15 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+..++..+.| ...|..+||+..|++...+...
T Consensus 5 ~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~ 42 (73)
T d1sgma1 5 EKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHF 42 (73)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 455556666666666 6789999999999999887643
No 110
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=34.46 E-value=80 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
+..-|..|||+.+|+++.++....+...
T Consensus 60 ~~~~t~~eIa~~~~is~~ti~k~yk~i~ 87 (98)
T d1aisb1 60 KVPRTLDEIADIARVDKKEIGRSYRFIA 87 (98)
T ss_dssp TCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5556889999999999999988766443
No 111
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.88 E-value=9.3 Score=29.48 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHcCCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 393 NSHGKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 393 ~elgr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
...|...|..|||+..|+++.+++...+.
T Consensus 56 r~~~~~~t~~eIa~~~~vs~~tI~k~yk~ 84 (109)
T d1vola2 56 QASAEKRTQKEIGDIAGVADVTIRQSYRL 84 (109)
T ss_dssp HTSSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34566779999999999999999988653
No 112
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=33.78 E-value=43 Score=24.52 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 384 IQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 384 I~ka~~~L~~elgr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
|-..++++..+ ++.|..++|+.+|++..+|..+.+
T Consensus 12 l~~~i~~~r~~--~gltq~~lA~~~gis~~~is~ie~ 46 (89)
T d2o38a1 12 LAYALNAVIDR--ARLSQAAAAARLGINQPKVSALRN 46 (89)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHhhHhHHHHHHc
Confidence 33344444433 567999999999999999998876
No 113
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=32.60 E-value=24 Score=25.96 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=24.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhccc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRI 424 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~ 424 (442)
+.|..+||..+||+..+|...++..+.
T Consensus 23 g~s~~~vA~~lGIs~~tl~~W~k~~~~ 49 (89)
T d2jn6a1 23 GASLQQIANDLGINRVTLKNWIIKYGS 49 (89)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 569999999999999999999887764
No 114
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.52 E-value=23 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=26.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcccCCCC
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~~~SL 428 (442)
..+..+||+.++++...|..++++.+..-|+
T Consensus 30 G~s~r~aA~rf~VS~s~v~k~l~r~reTG~i 60 (63)
T d1k78a1 30 GVRPCDISRQLRVSHGCVSKILGRYYETGSI 60 (63)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999887765444
No 115
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.90 E-value=39 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+...|..|||+.+|++..+|-..+...
T Consensus 39 ~~plt~~ela~~l~vsk~~vs~~l~~L 65 (151)
T d1ku9a_ 39 DKPLTISDIMEELKISKGNVSMSLKKL 65 (151)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCcchHHHHHHHH
Confidence 334599999999999999999887654
No 116
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=31.46 E-value=23 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
.+|-.+...|..+.| ...|..+||+..||+..++...
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~ 42 (72)
T d2g3ba1 5 DAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYH 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCcCHHHHHHH
Confidence 455555555555555 5689999999999999998764
No 117
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=31.38 E-value=17 Score=25.50 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 382 SKIQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 382 ~kI~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
.+|-.+..+|..+.| ...|..+||+.+|++..++..
T Consensus 9 ~~I~~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~ 45 (71)
T d2iu5a1 9 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 45 (71)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCccccHHHH
Confidence 456667777777766 678999999999999988743
No 118
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=31.13 E-value=38 Score=24.79 Aligned_cols=25 Identities=8% Similarity=-0.122 Sum_probs=19.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+.|..|+|+.+||+..+|..+.+--
T Consensus 14 glsq~~LA~~lGvs~~~is~ie~g~ 38 (87)
T d2icta1 14 NVSLREFARAMEIAPSTASRLLTGK 38 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHTS
T ss_pred CCCHHHHHHHHhhcHHHHHHHHHhc
Confidence 5688888888888888888877543
No 119
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=31.10 E-value=16 Score=25.04 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcC-CCCcHHHHHHHhCCCHHHHHHH
Q 013472 384 IQKARKALTNSHG-KYPEDIEIAKYTGLSLAEIRSA 418 (442)
Q Consensus 384 I~ka~~~L~~elg-r~PS~eEIAe~LGIS~etVk~~ 418 (442)
|-.+..++..+.| ...|..+||+.+|++..++...
T Consensus 4 Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~ 39 (62)
T d2vkva1 4 VINSALELGNEVGIEGLTTRKLAQKLGVEQPTLYWH 39 (62)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 4444444444444 5679999999999999998654
No 120
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=29.45 E-value=31 Score=24.78 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=37.9
Q ss_pred hhhcCCCChhHHHHHHhcccCCCCCChHHHHHHHHHhHHHHHHH-HHHHHHHHHhCCCCChHHHHHHc
Q 013472 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLE-RIKTTLEKESGKAASLNCWAQAA 279 (442)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~lLt~eeE~eL~~~iq~~~~le-~~~~~L~~~~gr~pt~~ewA~a~ 279 (442)
++.||+.|-.+|+.+-.+...+...+.+--.-+.+.+-. -.+. ..+.-| +-+|..+|+++|.+++
T Consensus 3 IkQgpkEpf~dfV~Rl~~~~~~~~~~~~~k~~~~~~l~~-~nANpdCk~il-r~l~~~~tLeemm~aC 68 (70)
T d1a8oa_ 3 IRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLV-QNANPDCKTIL-KALGPGATLEEMMTAC 68 (70)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHTHHH-HTSCHHHHHHH-HTTCTTCCHHHHHHHT
T ss_pred CccCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-hhCCHHHHHHH-HccCCCCCHHHHHHhc
Confidence 356889999999887666666555554433333332211 0111 123333 4567889999998776
No 121
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.76 E-value=40 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCCCcH---HHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPED---IEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~---eEIAe~LGIS~etVk~~l~~ar 423 (442)
...|+. ++||..|||+...|+...+..|
T Consensus 30 ~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR 60 (71)
T d1wi3a_ 30 GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71)
T ss_dssp CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHhHhhH
Confidence 455644 5699999999999998765444
No 122
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.86 E-value=51 Score=22.62 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHcCCCCcH---HHHHHHhCCCHHHHHHHHHh
Q 013472 390 ALTNSHGKYPED---IEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 390 ~L~~elgr~PS~---eEIAe~LGIS~etVk~~l~~ 421 (442)
.+.......|+. ++||+.+||++.+|+...+.
T Consensus 18 ~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqN 52 (59)
T d2cqxa1 18 KVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRH 52 (59)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 334333445654 67999999999999987654
No 123
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.51 E-value=82 Score=21.84 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
....|-.|||+.+|+|..+|..++..
T Consensus 17 ~g~~sr~eLa~~~gLS~~Tvs~iv~~ 42 (70)
T d1z6ra1 17 LGPVSRIDLSRLAQLAPASITKIVHE 42 (70)
T ss_dssp SCSCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 44679999999999999999988653
No 124
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.21 E-value=48 Score=23.37 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=17.8
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 013472 400 EDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~ 420 (442)
..++||..||+++..|+....
T Consensus 30 ~r~~LA~~l~L~~~~V~~WFq 50 (68)
T d2cuea1 30 ARERLAAKIDLPEARIQVWFS 50 (68)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCcChhheeecCc
Confidence 457899999999999987654
No 125
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.08 E-value=31 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.3
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 013472 400 EDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~ 420 (442)
..++||..||+++..|+...+
T Consensus 27 ~~~~LA~~l~l~~~~V~~WFq 47 (50)
T d1s7ea1 27 LQITISQQLGLELSTVSNFFM 47 (50)
T ss_dssp HHHHHHTTSCSSSHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHhhhcCC
Confidence 346899999999999987654
No 126
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=25.05 E-value=12 Score=28.50 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 397 KYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 397 r~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
+-||..+||+.+|++..+|+.++...
T Consensus 32 ~LPs~r~La~~~~vSr~tvr~Al~~L 57 (100)
T d1v4ra1 32 TLPSVADIRAQFGVAAKTVSRALAVL 57 (100)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 56899999999999999999997644
No 127
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.01 E-value=59 Score=21.69 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.1
Q ss_pred CCCCcH---HHHHHHhCCCHHHHHHHHHh
Q 013472 396 GKYPED---IEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 396 gr~PS~---eEIAe~LGIS~etVk~~l~~ 421 (442)
...|+. ++||+.+||++..|+...+.
T Consensus 16 ~~~P~~~~~~~LA~~~~ls~~qV~~WFqN 44 (52)
T d1x2ma1 16 TKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 44 (52)
T ss_dssp CSSCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 345654 67999999999999877554
No 128
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.75 E-value=34 Score=26.87 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=25.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHhcccCCCC
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASECLRIVGSI 428 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ar~~~SL 428 (442)
+.+..+||+.+|+|..+|..++...+..-++
T Consensus 32 G~s~r~iA~~~~VS~~tV~k~l~r~~~~G~~ 62 (123)
T d1pdnc_ 32 GIRPCVISRQLRVSHGCVSKILNRYQETGSI 62 (123)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHccCCc
Confidence 5689999999999999999999877643333
No 129
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=67 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcc
Q 013472 401 DIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 401 ~eEIAe~LGIS~etVk~~l~~ar 423 (442)
.++||..+|++...|.......|
T Consensus 35 ~~~La~~~~l~~~qI~~WF~N~R 57 (62)
T d1x2na1 35 KKQIAAQTNLTLLQVNNWFINAR 57 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHhHHHHHHHH
Confidence 35799999999999998776544
No 130
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=24.12 E-value=48 Score=22.83 Aligned_cols=35 Identities=20% Similarity=0.082 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHH-cC-CCCcHHHHHHHhCCCHHHHHH
Q 013472 383 KIQKARKALTNS-HG-KYPEDIEIAKYTGLSLAEIRS 417 (442)
Q Consensus 383 kI~ka~~~L~~e-lg-r~PS~eEIAe~LGIS~etVk~ 417 (442)
+|-.+..+|..+ .| ...|..+||+..|++...+..
T Consensus 6 ~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~ 42 (68)
T d1z0xa1 6 TIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYW 42 (68)
T ss_dssp HHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccCHHHHHHHHCcchhHHHH
Confidence 444555555543 45 678999999999999998854
No 131
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.07 E-value=91 Score=26.58 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=55.7
Q ss_pred HHHHHHhchHHHHHHHHHhHHHHHHHHHHhhCCCCC---HHhHHHHHHHHHHHhHHhcC---CCCCCChHHHHHHHHHHH
Q 013472 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIP---FSDLLQAGNVGVLQGAERFD---HTRGYKFSTYVQYWIRKS 359 (442)
Q Consensus 286 L~~~l~~G~~Are~LI~~nlrLV~sIAkrY~g~g~d---~EDLIQEG~IGLirAieKFD---p~kG~rFSTYa~~wIRna 359 (442)
++.++..|.+|++.+.+.+-..+....+.....|.. .-.|++--+..+.+++.-|. |+.+...++.++.|+.+.
T Consensus 94 ~L~rLg~~~~A~~lfL~~rs~~l~~~i~~~~~~~~~~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~~sS~lv~Wa~~e 173 (229)
T d2d2sa1 94 NMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDE 173 (229)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHH
Confidence 455666677788888888888877766655444432 56788888889999988875 222334677788888888
Q ss_pred HHHHHH
Q 013472 360 ISKMVA 365 (442)
Q Consensus 360 I~r~LR 365 (442)
+..++.
T Consensus 174 i~~f~~ 179 (229)
T d2d2sa1 174 VDNHFK 179 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887665
No 132
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.43 E-value=25 Score=24.07 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.4
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 013472 400 EDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~ 420 (442)
..++||..|||++..|+...+
T Consensus 29 ~r~~LA~~l~l~~~~V~~WFq 49 (58)
T d1ig7a_ 29 ERAEFSSSLSLTETQVKIWFQ 49 (58)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCChhheeecCc
Confidence 346899999999999987654
No 133
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.72 E-value=80 Score=22.31 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=21.1
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHH
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.++.|.+++|+.+|++...|..+-.
T Consensus 17 ~~gltq~~lA~~~gis~~~is~~E~ 41 (78)
T d1x57a1 17 SKGLTQKDLATKINEKPQVIADYES 41 (78)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCChhHHHHcCCCCHHHHHHHHc
Confidence 3567999999999999999988744
No 134
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=22.53 E-value=96 Score=23.42 Aligned_cols=28 Identities=4% Similarity=-0.053 Sum_probs=23.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHhc
Q 013472 395 HGKYPEDIEIAKYTGLSLAEIRSASECL 422 (442)
Q Consensus 395 lgr~PS~eEIAe~LGIS~etVk~~l~~a 422 (442)
-+...|..|||+.+|++..+|..++...
T Consensus 42 ~~~~it~~ela~~~~~~~~~vs~~l~~L 69 (135)
T d3broa1 42 KNKEVLQRDLESEFSIKSSTATVLLQRM 69 (135)
T ss_dssp TTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHhHHHHHHHHH
Confidence 3556799999999999999998887644
No 135
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=21.93 E-value=34 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHh
Q 013472 398 YPEDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 398 ~PS~eEIAe~LGIS~etVk~~l~~ 421 (442)
..|-.|||+.+|++..+|..++..
T Consensus 12 pisr~eLa~~~gls~~TVs~~v~~ 35 (62)
T d2hoea1 12 PVSRVELAEELGLTKTTVGEIAKI 35 (62)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 469999999999999999988653
No 136
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.74 E-value=58 Score=23.89 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPEDIEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~eEIAe~LGIS~etVk~~l~~ar 423 (442)
-...+.+.||+.+|++++.|+..+..+-
T Consensus 28 Y~~Isl~~la~~l~l~~~evE~~l~~mI 55 (84)
T d1ufma_ 28 YNNITFEELGALLEIPAAKAEKIASQMI 55 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hceeeHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456899999999999999998876554
No 137
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.61 E-value=49 Score=22.64 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=18.2
Q ss_pred cHHHHHHHhCCCHHHHHHHHHh
Q 013472 400 EDIEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 400 S~eEIAe~LGIS~etVk~~l~~ 421 (442)
..++||..+||++..|+.....
T Consensus 30 ~r~~LA~~l~l~~~~V~~WFqN 51 (60)
T d1yz8p1 30 TREEIAVWTNLTEARVRVWFKN 51 (60)
T ss_dssp TTTHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHhHH
Confidence 4578999999999999876543
No 138
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.48 E-value=37 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=20.1
Q ss_pred CCCCcH---HHHHHHhCCCHHHHHHHHHh
Q 013472 396 GKYPED---IEIAKYTGLSLAEIRSASEC 421 (442)
Q Consensus 396 gr~PS~---eEIAe~LGIS~etVk~~l~~ 421 (442)
...|+. ++||+.+|+++..|+.....
T Consensus 21 ~~~P~~~~~~~La~~l~l~~~~V~~WFqN 49 (58)
T d1au7a1 21 HSKPSSQEIMRMAEELNLEKEVVRVWFCN 49 (58)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445654 67999999999999877553
No 139
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth (Heliothis virescens) [TaxId: 7102]}
Probab=20.99 E-value=2.2e+02 Score=23.81 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=35.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhCC-CCCHHh---HHHHHHHH--HHHhHHhcCCCC
Q 013472 297 REELIKSTRPLVLFLARNYRGL-GIPFSD---LLQAGNVG--VLQGAERFDHTR 344 (442)
Q Consensus 297 re~LI~~nlrLV~sIAkrY~g~-g~d~ED---LIQEG~IG--LirAieKFDp~k 344 (442)
+.++.......|+.+|++.-+- .+..+| |++.|++. +++++.+|++..
T Consensus 53 ~~~~~~~~i~~iV~faK~lP~F~~L~~~DQi~LLk~~~~El~lL~~a~~~~~~~ 106 (243)
T d2r40d1 53 ITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAAT 106 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTT
T ss_pred HHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4466667788899999998764 477777 78888855 467888887654
No 140
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.87 E-value=65 Score=22.64 Aligned_cols=28 Identities=25% Similarity=0.094 Sum_probs=21.0
Q ss_pred CCCCcH---HHHHHHhCCCHHHHHHHHHhcc
Q 013472 396 GKYPED---IEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 396 gr~PS~---eEIAe~LGIS~etVk~~l~~ar 423 (442)
...|+. ++||..+|+++..|+...+..|
T Consensus 30 n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR 60 (67)
T d1ocpa_ 30 CPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60 (67)
T ss_dssp CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 344554 6799999999999988765444
No 141
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=20.72 E-value=72 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=15.9
Q ss_pred CcHHHHHHHhCCCHHHHHHHHH
Q 013472 399 PEDIEIAKYTGLSLAEIRSASE 420 (442)
Q Consensus 399 PS~eEIAe~LGIS~etVk~~l~ 420 (442)
.|.+|+|+.+||+...|..+-+
T Consensus 26 ~t~~eLA~~~Gvs~~~ls~iE~ 47 (82)
T d2ofya1 26 MSMVTVAFDAGISVETLRKIET 47 (82)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHcCCHHHHHHHHc
Confidence 4777777777777777776654
No 142
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.02 E-value=33 Score=23.66 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCcH---HHHHHHhCCCHHHHHHHHHhcc
Q 013472 398 YPED---IEIAKYTGLSLAEIRSASECLR 423 (442)
Q Consensus 398 ~PS~---eEIAe~LGIS~etVk~~l~~ar 423 (442)
.||. ++||..+|++...|.......|
T Consensus 25 yPs~~e~~~La~~~gL~~~qV~~WF~N~R 53 (60)
T d1k61a_ 25 YLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHCcCHHHHhHHhHhhc
Confidence 3655 4689999999999998876554
Done!