Query 013473
Match_columns 442
No_of_seqs 267 out of 1374
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 4E-118 8E-123 922.2 40.0 405 38-442 2-407 (427)
2 cd06105 ScCit1-2_like Saccharo 100.0 2E-113 5E-118 887.8 41.5 403 40-442 1-404 (427)
3 KOG2617 Citrate synthase [Ener 100.0 1E-112 2E-117 851.4 32.0 402 36-441 23-425 (458)
4 cd06106 ScCit3_like Saccharomy 100.0 1E-110 2E-115 867.6 40.4 403 40-442 1-408 (428)
5 PRK09569 type I citrate syntha 100.0 2E-110 4E-115 868.2 40.6 403 39-442 2-407 (437)
6 cd06103 ScCS-like Saccharomyce 100.0 6E-108 1E-112 847.5 40.4 403 40-442 1-406 (426)
7 PLN02456 citrate synthase 100.0 2E-100 4E-105 797.2 33.8 381 36-441 30-422 (455)
8 cd06115 AthCS_per_like Arabido 100.0 1.3E-93 2.8E-98 738.2 35.9 362 54-442 9-383 (410)
9 cd06107 EcCS_AthCS-per_like Es 100.0 2.1E-92 4.6E-97 724.5 35.1 344 76-442 6-363 (382)
10 cd06116 CaCS_like Chloroflexus 100.0 2.5E-92 5.4E-97 724.3 33.7 340 76-442 6-356 (384)
11 COG0372 GltA Citrate synthase 100.0 9.9E-92 2.1E-96 717.0 33.8 345 68-442 9-360 (390)
12 cd06109 BsCS-I_like Bacillus s 100.0 3.2E-91 7E-96 709.1 35.7 329 77-442 1-332 (349)
13 TIGR01798 cit_synth_I citrate 100.0 6.5E-91 1.4E-95 718.5 34.3 353 55-442 20-387 (412)
14 PRK12351 methylcitrate synthas 100.0 1.2E-90 2.6E-95 710.1 35.0 333 77-442 10-349 (378)
15 PRK14036 citrate synthase; Pro 100.0 4E-90 8.6E-95 707.1 35.4 338 75-442 4-347 (377)
16 cd06117 Ec2MCS_like_1 Subgroup 100.0 4.8E-90 1E-94 704.0 34.4 332 78-442 2-340 (366)
17 PRK05614 gltA type II citrate 100.0 5.4E-90 1.2E-94 713.5 35.0 353 55-442 33-399 (419)
18 PRK14032 citrate synthase; Pro 100.0 1.2E-89 2.6E-94 715.4 37.1 375 45-442 9-418 (447)
19 cd06108 Ec2MCS_like Escherichi 100.0 1.3E-89 2.9E-94 699.7 35.1 330 77-442 1-337 (363)
20 cd06112 citrate_synt_like_1_1 100.0 2.2E-89 4.7E-94 701.5 34.2 339 76-442 2-347 (373)
21 PRK14035 citrate synthase; Pro 100.0 7.9E-89 1.7E-93 695.8 34.9 334 75-442 3-342 (371)
22 cd06113 citrate_synt_like_1_2 100.0 2.1E-88 4.5E-93 700.2 36.8 350 81-442 10-388 (406)
23 PRK14034 citrate synthase; Pro 100.0 4.3E-88 9.2E-93 690.6 34.4 334 75-442 3-342 (372)
24 cd06114 EcCS_like Escherichia 100.0 7.5E-88 1.6E-92 694.9 34.3 341 75-442 27-381 (400)
25 PRK14037 citrate synthase; Pro 100.0 1.3E-87 2.7E-92 688.6 35.3 335 75-442 4-347 (377)
26 PF00285 Citrate_synt: Citrate 100.0 2.3E-86 5E-91 677.0 29.0 336 78-442 1-344 (356)
27 PRK12349 citrate synthase 3; P 100.0 5.3E-85 1.2E-89 668.3 34.6 334 76-442 6-346 (369)
28 cd06111 DsCS_like Cold-active 100.0 5.8E-85 1.3E-89 666.5 33.9 333 77-442 1-339 (362)
29 cd06118 citrate_synt_like_1 Ci 100.0 2.9E-84 6.3E-89 661.7 34.2 336 77-442 1-342 (358)
30 TIGR01800 cit_synth_II 2-methy 100.0 9.8E-84 2.1E-88 659.4 34.1 333 77-442 1-339 (368)
31 PRK14033 citrate synthase; Pro 100.0 2.9E-83 6.3E-88 656.4 34.4 335 75-442 9-349 (375)
32 cd06110 BSuCS-II_like Bacillus 100.0 3.8E-83 8.1E-88 652.9 34.7 333 77-442 1-339 (356)
33 PRK12350 citrate synthase 2; P 100.0 4.4E-83 9.6E-88 648.3 31.2 318 77-442 3-329 (353)
34 cd06101 citrate_synt Citrate s 100.0 2.6E-67 5.5E-72 516.7 23.4 243 77-442 1-249 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 1.3E-60 2.7E-65 471.6 24.7 250 80-442 16-265 (282)
36 PRK06224 citrate synthase; Pro 100.0 9.3E-54 2E-58 420.5 22.4 225 84-442 8-233 (263)
37 cd06099 CS_ACL-C_CCL Citrate s 100.0 8.8E-53 1.9E-57 401.8 18.6 192 241-442 1-197 (213)
38 cd06100 CCL_ACL-C Citryl-CoA l 100.0 2.5E-47 5.4E-52 367.6 19.6 196 239-442 10-208 (227)
39 PLN02522 ATP citrate (pro-S)-l 100.0 1.7E-46 3.6E-51 401.8 22.6 170 259-442 401-587 (608)
40 KOG1254 ATP-citrate lyase [Ene 99.4 1.9E-13 4.2E-18 141.2 5.8 172 257-442 391-579 (600)
41 cd06100 CCL_ACL-C Citryl-CoA l 97.9 0.00082 1.8E-08 65.2 16.7 71 102-183 1-77 (227)
42 KOG2617 Citrate synthase [Ener 94.5 0.011 2.5E-07 61.2 0.2 179 69-251 257-454 (458)
43 cd06099 CS_ACL-C_CCL Citrate s 79.7 7.1 0.00015 37.6 7.5 59 123-183 2-64 (213)
44 PRK14037 citrate synthase; Pro 72.1 10 0.00023 39.7 6.9 62 122-183 151-214 (377)
45 cd06112 citrate_synt_like_1_1 60.6 16 0.00036 38.2 5.6 60 122-183 152-215 (373)
46 PRK14035 citrate synthase; Pro 60.5 23 0.0005 37.1 6.7 61 121-183 150-214 (371)
47 PRK12349 citrate synthase 3; P 59.5 31 0.00067 36.1 7.4 60 122-183 154-217 (369)
48 PRK14034 citrate synthase; Pro 57.8 27 0.00058 36.7 6.6 61 122-184 151-215 (372)
49 PRK14036 citrate synthase; Pro 56.6 31 0.00067 36.2 6.9 61 122-184 153-217 (377)
50 PF07583 PSCyt2: Protein of un 48.0 19 0.00042 34.7 3.4 34 127-165 31-64 (208)
51 PRK14033 citrate synthase; Pro 47.8 60 0.0013 34.1 7.3 60 122-183 158-221 (375)
52 PRK12351 methylcitrate synthas 46.5 68 0.0015 33.8 7.5 60 122-183 158-221 (378)
53 cd06111 DsCS_like Cold-active 46.4 63 0.0014 33.7 7.2 60 122-183 148-211 (362)
54 cd06108 Ec2MCS_like Escherichi 44.6 68 0.0015 33.6 7.1 60 122-183 146-209 (363)
55 TIGR01800 cit_synth_II 2-methy 42.2 88 0.0019 32.7 7.5 61 121-183 147-211 (368)
56 PTZ00096 40S ribosomal protein 41.3 20 0.00043 32.7 2.2 23 98-130 15-37 (143)
57 cd06113 citrate_synt_like_1_2 41.0 82 0.0018 33.5 7.1 60 122-183 175-240 (406)
58 cd06117 Ec2MCS_like_1 Subgroup 40.0 97 0.0021 32.4 7.4 60 122-183 149-212 (366)
59 PRK04038 rps19p 30S ribosomal 37.9 25 0.00054 31.7 2.3 23 98-130 7-29 (134)
60 cd06118 citrate_synt_like_1 Ci 37.1 1.1E+02 0.0023 31.8 7.2 60 122-183 148-211 (358)
61 cd06101 citrate_synt Citrate s 36.9 1.4E+02 0.0031 29.7 7.8 76 103-183 37-116 (265)
62 PRK14032 citrate synthase; Pro 36.7 1.1E+02 0.0024 33.0 7.4 60 122-183 205-270 (447)
63 cd06109 BsCS-I_like Bacillus s 35.8 1.1E+02 0.0024 31.8 7.0 60 122-183 137-200 (349)
64 cd06110 BSuCS-II_like Bacillus 35.3 1.2E+02 0.0025 31.6 7.1 60 122-183 148-211 (356)
65 TIGR01025 rpsS_arch ribosomal 33.7 31 0.00067 31.2 2.2 23 98-130 5-27 (135)
66 PRK08558 adenine phosphoribosy 33.1 87 0.0019 30.7 5.5 56 103-166 24-80 (238)
67 PF00285 Citrate_synt: Citrate 32.0 1.7E+02 0.0036 30.4 7.6 60 122-183 148-213 (356)
68 cd04448 DEP_PIKfyve DEP (Dishe 30.1 80 0.0017 25.7 3.9 32 123-154 32-63 (81)
69 TIGR00006 S-adenosyl-methyltra 28.9 3E+02 0.0065 28.1 8.7 71 101-180 130-209 (305)
70 PLN00179 acyl- [acyl-carrier p 27.8 7.6E+02 0.016 26.2 11.9 72 280-362 231-302 (390)
71 PRK00050 16S rRNA m(4)C1402 me 27.8 3.1E+02 0.0067 27.9 8.5 71 101-180 128-205 (296)
72 PF03461 TRCF: TRCF domain; I 27.5 80 0.0017 26.6 3.7 32 133-164 27-59 (101)
73 PRK13890 conjugal transfer pro 24.3 2.8E+02 0.0061 24.1 6.6 13 100-112 16-28 (120)
74 PRK13997 potassium-transportin 21.9 60 0.0013 31.1 2.0 68 11-95 57-134 (193)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=3.9e-118 Score=922.17 Aligned_cols=405 Identities=76% Similarity=1.228 Sum_probs=388.6
Q ss_pred hhHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCC
Q 013473 38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (442)
Q Consensus 38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~ 117 (442)
++||++++++||.+++++|+||++||+++||++||+|+++||||+++++|+||+||+++||+||||+|+||++.++++.+
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccC
Q 013473 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (442)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~ 197 (442)
++++.||||+||||||++||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+.++.|+++|+.+.+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013473 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (442)
Q Consensus 198 ~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~S 277 (442)
+.++|++.++++++|||++|+|+|+|||+++++|+.++||+++||++||++||+++++.++++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS 241 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS 241 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence 88999999999999999999999999998777777789999999999999999988999999999999999999999999
Q ss_pred hhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013473 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (442)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr 357 (442)
|||+||||||++|||+|++|||++|+||+||||||+|++||.++.+++|.+++++++++||++++++|++||||||||||
T Consensus 242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr 321 (427)
T TIGR01793 242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR 321 (427)
T ss_pred hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999887887788999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcch-hhhHHhhhh
Q 013473 358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDA-DFLSGTTAN 436 (442)
Q Consensus 358 ~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t-v~~~gR~ag 436 (442)
.+|||+++|+++++++.+++++++++++++++++++++++++.||+|||||||+|+|+++||||+..+|| +|.++|++|
T Consensus 322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~G 401 (427)
T TIGR01793 322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRALG 401 (427)
T ss_pred CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccch
Confidence 9999999999999998888999999999999999999999999999999999999999999999645555 777999999
Q ss_pred hhcccC
Q 013473 437 CGLTIL 442 (442)
Q Consensus 437 ~~~~~~ 442 (442)
|++|++
T Consensus 402 w~AH~i 407 (427)
T TIGR01793 402 ILSQLI 407 (427)
T ss_pred HHHHHH
Confidence 999973
No 2
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=2.1e-113 Score=887.79 Aligned_cols=403 Identities=64% Similarity=1.113 Sum_probs=384.6
Q ss_pred HHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCCC
Q 013473 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (442)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~ 119 (442)
|||++++.||.+|+++++||++||++++|++|+|++++||||+++++|+||+||+++||+||||+|+||++++|++.+++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766788
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCC
Q 013473 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 199 (442)
Q Consensus 120 ~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~ 199 (442)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|+|++.|+++.++.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888788888
Q ss_pred CCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCchh
Q 013473 200 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAH 279 (442)
Q Consensus 200 ~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~St~ 279 (442)
++|++.++++++|||++|+|+|++||+++++.++++||+++||++||++||++.++.++++||++|||||||||+|+|||
T Consensus 161 ~~~~~~~~~~~~LiAk~p~i~A~~yr~~~~g~~~~~pd~~ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTf 240 (427)
T cd06105 161 KYWEYVYEDSMDLIAKLPCVAAKIYRNLYRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHH
Confidence 89999999999999999999999999866555789999999999999999998778899999999999999998899999
Q ss_pred HHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 013473 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 359 (442)
Q Consensus 280 aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~ 359 (442)
|+||||||++|||+|++||+++|+||+||||||+|++||.++.+++|.+++++++++||++.+++|++||||||||||..
T Consensus 241 aarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~ 320 (427)
T cd06105 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKT 320 (427)
T ss_pred HHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999988888777899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcch-hhhHHhhhhhh
Q 013473 360 DPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDA-DFLSGTTANCG 438 (442)
Q Consensus 360 DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t-v~~~gR~ag~~ 438 (442)
|||+++|+++++++.+++++++++++++++++++++++++.||+|||||||||+++++||||+.++|| +|.++|++||+
T Consensus 321 DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW~ 400 (427)
T cd06105 321 DPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVL 400 (427)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999544545 78899999999
Q ss_pred cccC
Q 013473 439 LTIL 442 (442)
Q Consensus 439 ~~~~ 442 (442)
+|++
T Consensus 401 AH~~ 404 (427)
T cd06105 401 SQLI 404 (427)
T ss_pred HHHH
Confidence 9974
No 3
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=9.7e-113 Score=851.35 Aligned_cols=402 Identities=58% Similarity=0.982 Sum_probs=392.0
Q ss_pred cchhHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCC
Q 013473 36 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAA 115 (442)
Q Consensus 36 ~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~ 115 (442)
+..+||++|++.||++++++|+++++|| ++|+||++++++||||++.+.|++|++|+++||+|||++|+||+..+|++
T Consensus 23 ~~~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI~frg~~i~e~q~~lp~~ 100 (458)
T KOG2617|consen 23 SAATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGIRFRGGDIPECQKRLPPA 100 (458)
T ss_pred ccccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhCeeecCCCHHHHHhhCCCC
Confidence 3445999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhc
Q 013473 116 KPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG 195 (442)
Q Consensus 116 ~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~ 195 (442)
+++.||+||+++|||+||++||++|+++++.+|++|+.+|++|.++|+++|++.|||.||++++++|+..|+|+++|..|
T Consensus 101 ~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G 180 (458)
T KOG2617|consen 101 EEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRG 180 (458)
T ss_pred ccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCC
Q 013473 196 IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGN 275 (442)
Q Consensus 196 ~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n 275 (442)
++|.+||++++|||++|||++|+|+|+||++.+++|.+.+ ++++||++||++|+++.+|.++++||+|++|||||||+|
T Consensus 181 ~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~~-~~~~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~gn 259 (458)
T KOG2617|consen 181 IGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPKP-DPNLDYSANFARMLGSRQPDFAQLMRLYVGIHADHEGGN 259 (458)
T ss_pred cchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCCC-CcccchhHhHHHHHccCChHHHHHHHHeeeeecccccCc
Confidence 9999999999999999999999999999999999886555 999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCC
Q 013473 276 VSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGV 355 (442)
Q Consensus 276 ~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~v 355 (442)
+|+||.|+++|++ |||.|++||+++|+||+||+|||+|++||.+++++||++.++|++++|+|+++++|++||||||+|
T Consensus 260 VsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHav 338 (458)
T KOG2617|consen 260 VSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAV 338 (458)
T ss_pred HHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhh-HHhh
Q 013473 356 LRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFL-SGTT 434 (442)
Q Consensus 356 yr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~-~gR~ 434 (442)
||++|||+.++++||.+++++||+++++..++++++.+++|+||.||+|||||+|||+++++||+++..||||+| ++|+
T Consensus 339 lr~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVsRa 418 (458)
T KOG2617|consen 339 LRKTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVSRA 418 (458)
T ss_pred ccCCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988889877 7999
Q ss_pred hhhhccc
Q 013473 435 ANCGLTI 441 (442)
Q Consensus 435 ag~~~~~ 441 (442)
+|.++++
T Consensus 419 ~Gvlsql 425 (458)
T KOG2617|consen 419 LGVLSQL 425 (458)
T ss_pred HHHHHHH
Confidence 9999985
No 4
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=1.1e-110 Score=867.60 Aligned_cols=403 Identities=55% Similarity=0.951 Sum_probs=375.8
Q ss_pred HHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCCC
Q 013473 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (442)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~ 119 (442)
||++++++||.+|+++|+|+++||+++||++|++++.+||||+++++|+||+||+++||+||||+|+||++++|+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998764444
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCC
Q 013473 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS 199 (442)
Q Consensus 120 ~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~ 199 (442)
+..||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+.++.|..+|+.+..+.
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 44459999999999999999999999999999999999999999999999999999999999999888876777776666
Q ss_pred CCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc-ccCCCCCCCHHHHHHHHhCC-CChHHHHHHHHHHHHhccCCCCCCc
Q 013473 200 KYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGF-DDPKMLELMRLYVTIHSDHEGGNVS 277 (442)
Q Consensus 200 ~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~-~~~p~~~l~~a~nfl~ml~~-~~~~~~~~l~~~LiL~ADHeg~n~S 277 (442)
++|++.++++++|||++|+|+|++||++++++. +++|++++||++||++||+. |++.++++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaS 240 (428)
T cd06106 161 EYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVS 240 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccch
Confidence 789999999999999999999999999876554 45699999999999999965 7788999999999999999988999
Q ss_pred hhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013473 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (442)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr 357 (442)
|||+||||||++|||+|++|||++|+||+|||||++|++||.++.++||.+.+++++++||++.+++|++||||||||||
T Consensus 241 TfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk 320 (428)
T cd06106 241 AHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLR 320 (428)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886556899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhC--CCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCC-cchhhhHHhh
Q 013473 358 KTDPRYTCQREFALKHL--PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEAR-YDADFLSGTT 434 (442)
Q Consensus 358 ~~DPRa~~l~~~a~~~~--~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~-~~tv~~~gR~ 434 (442)
..|||+++|+++++++. ..++++++++++++++.+++.++++.|+++||||||+|+++++||||++. |+++|.++|+
T Consensus 321 ~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~lFaisR~ 400 (428)
T cd06106 321 KPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTVIFGVSRA 400 (428)
T ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchHHHHHHHH
Confidence 99999999999999874 35799999999999999988999999999999999999999999999854 5558889999
Q ss_pred hhhhcccC
Q 013473 435 ANCGLTIL 442 (442)
Q Consensus 435 ag~~~~~~ 442 (442)
+||++||+
T Consensus 401 ~GW~AHi~ 408 (428)
T cd06106 401 LGPLTQLV 408 (428)
T ss_pred HHHHHHHH
Confidence 99999973
No 5
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.7e-110 Score=868.22 Aligned_cols=403 Identities=51% Similarity=0.872 Sum_probs=381.8
Q ss_pred hHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCC
Q 013473 39 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPD 118 (442)
Q Consensus 39 ~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~ 118 (442)
+|||+++++||.+|++|++||++||+++||++|+||+.+||||+++++|+||+||+++||+||||+|+||++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhc-cC
Q 013473 119 GEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IH 197 (442)
Q Consensus 119 ~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~-~~ 197 (442)
++++||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|++++++|+++|.|+..|+++ .+
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999888776 56
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013473 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (442)
Q Consensus 198 ~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~S 277 (442)
+.++|++.++++++|||++|+|+|++||++++++++++|++++||++||++||+++ +.++++||++|||||||||+|+|
T Consensus 162 ~~~~~~~~~~~~~rliA~~p~i~A~~yr~~~~g~~~~~p~~~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~naS 240 (437)
T PRK09569 162 KMDAWEYMYEDASDLVARIPVIAAYIYNLKYKGDKQIPSDPELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNVS 240 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcch
Confidence 66789999999999999999999999999876667899999999999999999985 45689999999999999978999
Q ss_pred hhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 013473 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECG-ENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 356 (442)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig-~~~s~~~i~~~v~~~l~~g~~IpGfGH~vy 356 (442)
|||+|+++||++|||+|++||+++|+||+||||||+|++||.++.+++| ..++++++++||++.+++|++|||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvy 320 (437)
T PRK09569 241 AHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVL 320 (437)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999999987774 334789999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCC-CCcchhhhHHhhh
Q 013473 357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAE-ARYDADFLSGTTA 435 (442)
Q Consensus 357 r~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~-~~~~tv~~~gR~a 435 (442)
|..|||+++|+++++++.++++++++++++++++++++.++++.||++||||||+|+++++||||+ +.|+++|.++|++
T Consensus 321 k~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~lFaisR~~ 400 (437)
T PRK09569 321 RKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVLFGVGRAL 400 (437)
T ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHHHHHHHHHH
Confidence 999999999999999998889999999999999999989999999999999999999999999995 5566688899999
Q ss_pred hhhcccC
Q 013473 436 NCGLTIL 442 (442)
Q Consensus 436 g~~~~~~ 442 (442)
||++|++
T Consensus 401 Gw~AH~i 407 (437)
T PRK09569 401 GVMANIT 407 (437)
T ss_pred HHHHHHH
Confidence 9999974
No 6
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=6.3e-108 Score=847.48 Aligned_cols=403 Identities=62% Similarity=1.076 Sum_probs=379.5
Q ss_pred HHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCCC
Q 013473 40 LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDG 119 (442)
Q Consensus 40 lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~ 119 (442)
|||+++++||.++++++.||++||+++++++|++++.+||+|+++++|+||+||+++||+||||+|+||++++|+++++.
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998766555
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhc-cCC
Q 013473 120 EPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHK 198 (442)
Q Consensus 120 ~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~-~~~ 198 (442)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.|.++|+++|+++|||++|+++|++|+++++|++.|+++ .++
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999988887778765 666
Q ss_pred CCCCcchHHHHHHHHhhhhHHHHHHHHHHh-cCCcccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013473 199 SKYWEPTYEDSLNLIARVPVVAAYVYQRIY-KDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (442)
Q Consensus 199 ~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~-~~~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~S 277 (442)
.++|+..++++++|||++|+|+|++||+++ .++++++|+++++|++||++||++.++..+++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaS 240 (426)
T cd06103 161 TTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVS 240 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccch
Confidence 778999999999999999999999999875 4556889999999999999999886688899999999999999988999
Q ss_pred hhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013473 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (442)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr 357 (442)
|||+|+||||++|||+|++|||++|+||+|||||++|++||.++.+++|.+++++++++||++.+++|++||||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk 320 (426)
T cd06103 241 AHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLR 320 (426)
T ss_pred HHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888887667899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCC-CCcchhhhHHhhhh
Q 013473 358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAE-ARYDADFLSGTTAN 436 (442)
Q Consensus 358 ~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~-~~~~tv~~~gR~ag 436 (442)
..|||+++|+++++++...++++++++++++++.++++++++.|+++||||||+|++++++|||+ +.|+++|.++|++|
T Consensus 321 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~lFa~sR~~G 400 (426)
T cd06103 321 KTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTVLFGVSRALG 400 (426)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhHHHhHhhcch
Confidence 99999999999999988788999999999999998888899999999999999999999999995 45566888999999
Q ss_pred hhcccC
Q 013473 437 CGLTIL 442 (442)
Q Consensus 437 ~~~~~~ 442 (442)
|++|++
T Consensus 401 w~AH~~ 406 (426)
T cd06103 401 VLAQLV 406 (426)
T ss_pred HHHHHH
Confidence 999973
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=2e-100 Score=797.21 Aligned_cols=381 Identities=47% Similarity=0.689 Sum_probs=359.2
Q ss_pred cchhHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCC
Q 013473 36 ADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPA 114 (442)
Q Consensus 36 ~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~ 114 (442)
+.+++|..+.+.+|+++..||+|++ |++.+|.+|+| +||+|+++++|+||+||+++|+ +||||+|+||++++
T Consensus 30 ~g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d---~Gl~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~~-- 102 (455)
T PLN02456 30 TGKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVD---PGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKS-- 102 (455)
T ss_pred CCcEEEEehhccCCcccchhhhccc--CcCccCCEecC---cccCCceeeeeeceEEeCCCCEEEECCccHHHHHhcC--
Confidence 5567899999889999999999999 88999999988 6999999999999999999997 99999999999987
Q ss_pred CCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhh
Q 013473 115 AKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEK 194 (442)
Q Consensus 115 ~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~ 194 (442)
+||||+||||+|+|||++|+++|+++|.+++.+|+++.++|++||+++|||++|+++|++|++++++...|..
T Consensus 103 -------~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~ 175 (455)
T PLN02456 103 -------PFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLR 175 (455)
T ss_pred -------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHH
Q 013473 195 GIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTI 267 (442)
Q Consensus 195 ~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL 267 (442)
|.++.++|+..++++++|||++|+|+|++||++++. .++.|++++||++||++||++ +++.++++||++|||
T Consensus 176 g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~-~~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiL 254 (455)
T PLN02456 176 GQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGR-GPVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFII 254 (455)
T ss_pred ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHee
Confidence 877777899999999999999999999999998765 467799999999999999987 788999999999999
Q ss_pred hccCCCCCCchhHHHHhh-ccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 013473 268 HSDHEGGNVSAHTGHLVA-SALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK 346 (442)
Q Consensus 268 ~ADHeg~n~St~aarvva-St~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~ 346 (442)
||||| +|+|||++|+++ ||++|||+|++|||++|+||+||||||+|++||.++ | +++++++||++++++|+
T Consensus 255 hADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei----~---~~~~v~~~v~~~l~~~~ 326 (455)
T PLN02456 255 HADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEI----G---TVENIPEYVEGVKNSKK 326 (455)
T ss_pred eccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHh----C---CHHHHHHHHHHHHhCCC
Confidence 99999 999999999999 999999999999999999999999999999999886 5 67899999999999999
Q ss_pred cccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCC
Q 013473 347 VVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEA 423 (442)
Q Consensus 347 ~IpGfGH~vyr~~DPRa~~l~~~a~~~---~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~ 423 (442)
+||||||||||..|||+++|+++++++ .+++|+++++.++++++. .+++|+.||+|||||||+|+|+++||||.+
T Consensus 327 ~l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~--~~~~~~~r~l~pNVDfysg~l~~~lGip~~ 404 (455)
T PLN02456 327 VLPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVAL--LDEYFKVRKLYPNVDFYSGVLLRALGFPEE 404 (455)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhcCCCCCCcCcHHHHHHHHHHcCcChh
Confidence 999999999999999999999999965 467899999999999883 377899999999999999999999999998
Q ss_pred CcchhhhHHhhhhhhccc
Q 013473 424 RYDADFLSGTTANCGLTI 441 (442)
Q Consensus 424 ~~~tv~~~gR~ag~~~~~ 441 (442)
.|+++|.++|++||++|+
T Consensus 405 ~~t~lFaisR~~Gw~AH~ 422 (455)
T PLN02456 405 FFTVLFAVSRAAGYLSQW 422 (455)
T ss_pred hccchhhhhhHHHHHHHH
Confidence 888888899999999996
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=1.3e-93 Score=738.23 Aligned_cols=362 Identities=26% Similarity=0.366 Sum_probs=324.0
Q ss_pred HHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh
Q 013473 54 RLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT 132 (442)
Q Consensus 54 ~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~ 132 (442)
.|++|++.-+ ..|-.+++ .||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+
T Consensus 9 d~~~~~~~~~--~~g~~~~~---~Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feEv~~LLl~ 74 (410)
T cd06115 9 DFKKIKAGKD--DKGLRLYD---PGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKS---------TFLEVAYLLIY 74 (410)
T ss_pred eHHHhcCCcc--cCCCcccC---CccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHc
Confidence 3678887332 34566765 5999999999999999999996 99999999999986 49999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCC--CCCcchHHHHH
Q 013473 133 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKS--KYWEPTYEDSL 210 (442)
Q Consensus 133 G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~--~~~e~~~e~a~ 210 (442)
|+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++.. ++....++ ..++..+++++
T Consensus 75 G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~--~~~~~~~~~~~~~~~~~~~a~ 152 (410)
T cd06115 75 GNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEA--NPALAGQDIYKNKQVRDKQIV 152 (410)
T ss_pred CCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccc--cccccccccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999765322 11000011 12466788999
Q ss_pred HHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHH
Q 013473 211 NLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHL 283 (442)
Q Consensus 211 ~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarv 283 (442)
+|||++|+|+|++||++.+. ++++|+++++|++||++||++ |++..+++||++|||||||| +|+||||+|+
T Consensus 153 rliA~~p~i~A~~~r~~~g~-~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaarv 230 (410)
T cd06115 153 RILGKAPTIAAAAYRRRAGR-PPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVRH 230 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHHH
Confidence 99999999999999988754 588999999999999999975 56788999999999999998 9999999999
Q ss_pred hhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcH
Q 013473 284 VASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRY 363 (442)
Q Consensus 284 vaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa 363 (442)
+|||++|||+|++|||++|+||+||||||+|++||.++ + +++++++||++.+++|++||||||||||..|||+
T Consensus 231 ~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa 303 (410)
T cd06115 231 LASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRA 303 (410)
T ss_pred HHhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccH
Confidence 99999999999999999999999999999999999876 5 5689999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcc
Q 013473 364 TCQREFALKHL---PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLT 440 (442)
Q Consensus 364 ~~l~~~a~~~~---~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~ 440 (442)
++|+++++++. ++++++++++++|+++.+ .++++.|+++||||||+|+++++||||++.|+++|.++|++||++|
T Consensus 304 ~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNVD~ysa~l~~~lG~p~~~~t~lFa~sR~~Gw~AH 381 (410)
T cd06115 304 KIIKKLADEVFEIVGKDPLIEIAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRAMGFPTDFFPVLFAIPRMAGYLAH 381 (410)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHh--hhhhcccCCCCChHHHHHHHHHHcCCChHhhhhHHHHHhhhhHHHH
Confidence 99999999874 457999999999998876 5677889999999999999999999999988889999999999999
Q ss_pred cC
Q 013473 441 IL 442 (442)
Q Consensus 441 ~~ 442 (442)
++
T Consensus 382 ~~ 383 (410)
T cd06115 382 WR 383 (410)
T ss_pred HH
Confidence 74
No 9
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=2.1e-92 Score=724.46 Aligned_cols=344 Identities=28% Similarity=0.425 Sum_probs=313.8
Q ss_pred ccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
..||+|+.+++|.||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 6 ~~GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feev~yLLl~G~LPt~~el~~f~~~L~~~~~l 76 (382)
T cd06107 6 DPGYLNTAVCESSITYIDGDKGILLYRGYPIEQLAESS---------TYEEVAYLLLWGELPTQEQYDEFQRRLSEHMMV 76 (382)
T ss_pred CCCcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCC
Confidence 46999999999999999999995 99999999999986 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCC---cchHHHHHHHHhhhhHHHHHHHHHHhcCC
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW---EPTYEDSLNLIARVPVVAAYVYQRIYKDG 231 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~---e~~~e~a~~LiA~lp~i~a~iyr~~~~~~ 231 (442)
|++|.++|+.||++.|||++|+++|++|++.++.......+ +.|| +..++++++|||++|+|+|++||++.+ .
T Consensus 77 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~~~g-~ 152 (382)
T cd06107 77 PESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG---DLYQNNPEVRDKQIIRTLAKMPTIAAAAYCHRIG-R 152 (382)
T ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 99999999999999999999999999999865332111111 3345 567788999999999999999998754 3
Q ss_pred cccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhcc
Q 013473 232 KIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304 (442)
Q Consensus 232 ~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~G 304 (442)
++++|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+|
T Consensus 153 ~~~~P~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v~aai~al~G 231 (382)
T cd06107 153 PFVYPRANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCMAAAIAALYG 231 (382)
T ss_pred CCCCCCCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 688999999999999999975 46789999999999999998 9999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHH
Q 013473 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQ 381 (442)
Q Consensus 305 PlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~ 381 (442)
|+|||||++|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++
T Consensus 232 plHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 304 (382)
T cd06107 232 PLHGGANEAALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLLK 304 (382)
T ss_pred CcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999886 5 568999999999999999999999999999999999999999874 4589999
Q ss_pred HHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 382 LVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 382 l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++++|+++.+ +++++.|+++||||||+|++++++|||++.|+++|.++|++||++|++
T Consensus 305 ~a~~ie~~~~~--~~~~~~k~l~pNvD~~sa~~~~~lG~p~~~~t~lf~~sR~~Gw~AH~~ 363 (382)
T cd06107 305 VAMELERIALE--DEYFVSRKLYPNVDFYSGFIYKALGFPPEFFTVLFAVARTSGWMAHWR 363 (382)
T ss_pred HHHHHHHHHHH--HhhhccCCCCcChHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHH
Confidence 99999998765 567788999999999999999999999998888999999999999973
No 10
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=2.5e-92 Score=724.35 Aligned_cols=340 Identities=26% Similarity=0.399 Sum_probs=312.5
Q ss_pred ccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
..||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 6 ~~Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~l 76 (384)
T cd06116 6 DPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQS---------SYLEVAYLLLHGELPTKERLAQWVYDITRHTMT 76 (384)
T ss_pred CCCcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 46999999999999999999996 99999999999986 499999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~ 234 (442)
|+.+.++++.||+++|||++|+++|++|++.++....+ ...+...+++++|||++|+|+|++||++++ .+++
T Consensus 77 p~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~-------~~~~~~~~~~~rliA~~p~i~A~~~r~~~g-~~~~ 148 (384)
T cd06116 77 HENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNI-------GDEEQRNKQIIRLIGKMPTIAAFAYRHRLG-LPYV 148 (384)
T ss_pred CHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCcccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcc
Confidence 99999999999999999999999999999876543111 123456678899999999999999998875 3588
Q ss_pred CCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccc
Q 013473 235 PKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 307 (442)
Q Consensus 235 ~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlH 307 (442)
+|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|||+|++||+++|+||+|
T Consensus 149 ~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~agi~aL~GplH 227 (384)
T cd06116 149 LPDNDLSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLH 227 (384)
T ss_pred CCCCCCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHHHHhccCCcc
Confidence 999999999999999975 56788999999999999998 9999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHH
Q 013473 308 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVS 384 (442)
Q Consensus 308 GgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~ 384 (442)
|||||+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++.
T Consensus 228 GGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia~ 300 (384)
T cd06116 228 GGANEAVLRMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIAV 300 (384)
T ss_pred cchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999999886 5 568999999999999999999999999999999999999998873 4578999999
Q ss_pred HHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 385 KLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 385 ~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++|+++.+ .++++.|+++||||||+|++++.+|||++.|+++|+++|++||++|++
T Consensus 301 ~~e~~~~~--~~~~~~k~l~pNvD~ysa~l~~~lGip~~~~t~lf~isR~~Gw~AH~~ 356 (384)
T cd06116 301 ELEKIALE--DEYFISRKLYPNVDFYSGLIYQALGFPTEAFTVLFAIPRTSGWLAQWI 356 (384)
T ss_pred HHHHHHHH--hhhhcccCCCCChHHHHHHHHHHhCCChhhccchhhhhhhchHHHHHH
Confidence 99998866 567788999999999999999999999999999999999999999973
No 11
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=9.9e-92 Score=717.03 Aligned_cols=345 Identities=31% Similarity=0.433 Sum_probs=312.0
Q ss_pred cceeecccccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 013473 68 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 146 (442)
Q Consensus 68 g~~tv~~~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~ 146 (442)
++.+..++.+||+|+.+++|+||+||+++| ++||||+|+||+++. +||||+||||+|+|||.+|++.|.+
T Consensus 9 ~~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~---------~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 9 SDVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEKS---------SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred CCccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhhc---------CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 667778888999999999999999999999 599999999999995 5999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHH
Q 013473 147 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 226 (442)
Q Consensus 147 ~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~ 226 (442)
++..++.+|+++.+++..+|++.|||++|++++++|+..+... .. .....+.+++|+|++|+|+|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~------~~----~~~~~~~a~rlia~~pti~a~~yr~ 149 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPDK------LD----LNDRREAALRLIAKLPTIAAAVYRY 149 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhccccccc------cc----cchhHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999998887643211 00 1126788999999999999999999
Q ss_pred HhcCCcccCCCCCCCHHHHHHHHhCC--CC-hHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhc
Q 013473 227 IYKDGKIIPKDDSLDYGGNFSHMLGF--DD-PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 303 (442)
Q Consensus 227 ~~~~~~~~~p~~~l~~a~nfl~ml~~--~~-~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~ 303 (442)
..+. .++.|+++++|++||++||.+ |+ |.++++||++|||||||| +|+||||+|||+||+||||+|++|||++|+
T Consensus 150 ~~g~-~~i~p~~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL~ 227 (390)
T COG0372 150 SRGE-PPIAPDPDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGALK 227 (390)
T ss_pred hcCC-CCccCCCCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHcC
Confidence 8754 467799999999999999987 55 589999999999999999 999999999999999999999999999999
Q ss_pred cccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHH
Q 013473 304 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 380 (442)
Q Consensus 304 GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~ 380 (442)
||+||||||+|++||+|+ ++ ..+++++||++.|++|++||||||||||+.|||+++|+++++++. ++++++
T Consensus 228 GPlHGGAne~v~~ml~ei----~~--~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~ 301 (390)
T COG0372 228 GPLHGGANEAVMKMLEEI----GS--SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLY 301 (390)
T ss_pred CCccCChHHHHHHHHHHH----cc--cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHH
Confidence 999999999999999987 42 233499999999999999999999999999999999999999984 445899
Q ss_pred HHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 381 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 381 ~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++.++|+++.+. .++ .|++|||||||||++|+.||||.+.|+.+|++||++||++|++
T Consensus 302 ~~a~~~e~~~l~~--~~~-~k~l~PNvDfysg~v~~~lGiP~~~fT~lFaiaR~~GW~AH~~ 360 (390)
T COG0372 302 EIAEELEEIALED--LGF-EKKLYPNVDFYSGIVYRALGIPTDMFTPLFAIARTVGWIAHWI 360 (390)
T ss_pred HHHHHHHHHHHHh--hhc-ccCCCCccccchHHHHHHcCCCHHhhhhhhhhhhHHHHHHHHH
Confidence 9999999999652 233 8999999999999999999999998888888999999999974
No 12
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=3.2e-91 Score=709.09 Aligned_cols=329 Identities=25% Similarity=0.349 Sum_probs=311.5
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
+||+|+.+++|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~---------~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp 71 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA---------SFEDVAALLWNGFFPDLPELEEFRAALAAARALP 71 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 599999999999999999999 699999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+.+.++|++| ++.|||++|++++++++.+ ..++++++|+|++|+|+|++||++.+ .+++.
T Consensus 72 ~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~~~g-~~~~~ 131 (349)
T cd06109 72 DVVAALLPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRLSRG-KQPIA 131 (349)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcC
Confidence 9999999999 8999999999999999752 24688999999999999999998764 35889
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
|++++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+
T Consensus 132 p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~ 210 (349)
T cd06109 132 PDPSLSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGP 210 (349)
T ss_pred CCCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHH
Confidence 99999999999999987 78889999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~ 393 (442)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++..+++++++++++|+++.++
T Consensus 211 v~~~l~ei----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~ 283 (349)
T cd06109 211 VLDMLDAI----G---TPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALAL 283 (349)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 99999886 4 4689999999999999999999999999999999999999999988889999999999999988
Q ss_pred HHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 394 LTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 394 l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++++++.|+++||||||+|++++++|||++.|+++|.++|++||++|++
T Consensus 284 ~~~~~~~r~l~pNvD~~sg~l~~~lGip~~~~t~lF~isR~~Gw~AH~~ 332 (349)
T cd06109 284 LREYKPGRPLETNVEFYTALLLEALGLPREAFTPTFAAGRTAGWTAHVL 332 (349)
T ss_pred HHHhcCCCCCCCCchhhHHHHHHHhCCChhhhhhHHHHHhHHHHHHHHH
Confidence 8888889999999999999999999999998888999999999999974
No 13
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=6.5e-91 Score=718.52 Aligned_cols=353 Identities=26% Similarity=0.392 Sum_probs=314.5
Q ss_pred HHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013473 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (442)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G 133 (442)
+++++.+.| ..++ ..||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|
T Consensus 20 ~~~~~~~~~-----~~~~---~~GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G 82 (412)
T TIGR01798 20 IRKLYKQTG-----LFTF---DPGFTSTASCESKITFIDGDKGILLYRGYPIDQLATKS---------DYLEVCYLLLNG 82 (412)
T ss_pred hHhhhhcCC-----CCcC---CCCCCCceeEeeeCeeEeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHcC
Confidence 566666533 3333 46999999999999999999995 99999999999986 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHH
Q 013473 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 213 (442)
Q Consensus 134 ~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~Li 213 (442)
+|||++|+++|+++|.+++.+|+.|.++|++||++.|||++|+++|++|+.++ ++.. +....+...+++++||
T Consensus 83 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~------~~~~-~~~~~~~~~~~a~~li 155 (412)
T TIGR01798 83 ELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFY------HDSL-DINDPRHREIAAIRLI 155 (412)
T ss_pred CCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhC------cccc-ccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998642 1111 1112245567899999
Q ss_pred hhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhc
Q 013473 214 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 286 (442)
Q Consensus 214 A~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaS 286 (442)
|++|+|+|++||++.+ .++++|++++||++||++||++ +++..+++||++|||||||| +|+||||+|+++|
T Consensus 156 A~~p~i~A~~yr~~~g-~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~aS 233 (412)
T TIGR01798 156 AKIPTLAAMSYKYSIG-QPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAGS 233 (412)
T ss_pred HHHHHHHHHHHHHhCC-CCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeeec
Confidence 9999999999997654 3588999999999999999974 57788999999999999998 9999999999999
Q ss_pred cCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCCcHH
Q 013473 287 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYT 364 (442)
Q Consensus 287 t~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~ 364 (442)
|++|+|+|++||+++|+||+|||||++|++||.++ + +++++++||++.++++ ++||||||||||..|||++
T Consensus 234 t~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 306 (412)
T TIGR01798 234 SGANPFACIAAGIAALWGPAHGGANEAALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRAK 306 (412)
T ss_pred CCCCHHHHHHHHhhhccCccccchHHHHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccHH
Confidence 99999999999999999999999999999999876 5 4689999999999888 5999999999999999999
Q ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhc
Q 013473 365 CQREFALKHL-----PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGL 439 (442)
Q Consensus 365 ~l~~~a~~~~-----~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~ 439 (442)
+|+++++++. ..++++++++++++++.+ .++++.|+++||||||+|++++++|||++.|+++|.++|++||++
T Consensus 307 ~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~lFaisR~~Gw~A 384 (412)
T TIGR01798 307 VMRETCHEVLKELGLHDDPLFKLAMELEKIALN--DPYFIERKLYPNVDFYSGIILKAMGIPTSMFTVIFALARTVGWIS 384 (412)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHh--hhhhccCCCCcChHHHHHHHHHHcCCChhhhhhHHHHHhhhhHHH
Confidence 9999998752 247899999999998865 567788999999999999999999999998888999999999999
Q ss_pred ccC
Q 013473 440 TIL 442 (442)
Q Consensus 440 ~~~ 442 (442)
|++
T Consensus 385 H~~ 387 (412)
T TIGR01798 385 HWS 387 (412)
T ss_pred HHH
Confidence 973
No 14
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=1.2e-90 Score=710.14 Aligned_cols=333 Identities=24% Similarity=0.363 Sum_probs=306.4
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
.||+||.+.+|.||.+|+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 10 ~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~---------~feeva~LL~~G~LP~~~el~~f~~~L~~~~~lp 80 (378)
T PRK12351 10 VALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLP 80 (378)
T ss_pred CCCCCeeeccccCeeEecCCCEEEECCccHHHHHhcC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999987 699999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+++.++|++||+++|||++|+++|++|++.++.. .+..++..++++++|||++|+|+|++||++.+ ++++.
T Consensus 81 ~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~~~--------~~~~~~~~~~~a~rliA~~p~i~a~~~r~~~~-~~~~~ 151 (378)
T PRK12351 81 AAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLPEK--------EDHNFSGARDIADRLLASLGSILLYWYHYSHN-GRRIE 151 (378)
T ss_pred HHHHHHHHhCCccCCHHHHHHHHHHhhcccCccc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccC
Confidence 9999999999999999999999999999865331 11234677889999999999999999998875 45555
Q ss_pred -CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 236 -KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 236 -p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
|+++++|++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 152 p~~~~ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e 230 (378)
T PRK12351 152 VETDDDSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANE 230 (378)
T ss_pred CCCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchHH
Confidence 46789999999999977 78899999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHHh
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEV 389 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~---~~~~~~~~l~~~l~~~ 389 (442)
+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++ .+++++++++++++++
T Consensus 231 ~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~ 303 (378)
T PRK12351 231 VAFEIQQRY----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETV 303 (378)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999876 5 57899999999999999999999999999999999999999986 3567999999999998
Q ss_pred hhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 390 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 390 ~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.+ .||++||||||+|+++++||||++.|+++|.++|++||++|++
T Consensus 304 ~~~-------~k~l~pNvD~ysg~l~~~lG~p~~~~t~lF~~sR~~Gw~AH~~ 349 (378)
T PRK12351 304 MWE-------EKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVISRTTGWAAHVI 349 (378)
T ss_pred HHH-------HhCCCCChHHHHHHHHHHcCCCHHhhhhHHHHHHHHHHHHHHH
Confidence 864 3799999999999999999999988888899999999999974
No 15
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=4e-90 Score=707.05 Aligned_cols=338 Identities=27% Similarity=0.407 Sum_probs=311.6
Q ss_pred cccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
+..||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|++||++|++.|+.+|.+++.
T Consensus 4 ~~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~ 74 (377)
T PRK14036 4 YRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKS---------SFLETAYLLIWGELPTAEELEEFEQEVRMHRR 74 (377)
T ss_pred CCCccCCCeeeeeeceEEECCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 447999999999999999999996 89999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
+|+.|.++|++||++.|||++|+++|++|+..++.. .....+..++++++|+|++|+|+|++||.+.+ .++
T Consensus 75 lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~--------~~~~~~~~~~~~~rliA~~p~i~a~~~r~~~g-~~~ 145 (377)
T PRK14036 75 VKYRIRDMMKCFPETGHPMDALQASAAALGLFYSRR--------ALDDPEYIRDAVVRLIAKIPTMVAAFQLIRKG-NDP 145 (377)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Confidence 999999999999999999999999999998754321 12234678899999999999999999887654 468
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++||+++||++||++||++ |++.++++||++|||||||| +|+||||+|+++||++|||+|++||+++|+||+|||||
T Consensus 146 ~~p~~~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~ 224 (377)
T PRK14036 146 IQPRDDLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGAN 224 (377)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChH
Confidence 8999999999999999987 78899999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHH
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFE 388 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~---~~~~~~~~l~~~l~~ 388 (442)
|+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++ .++++++++++++++
T Consensus 225 e~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~ 297 (377)
T PRK14036 225 EDVLAMLEEI----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELER 297 (377)
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999876 5 57899999999999999999999999999999999999999886 357899999999999
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+.+ +.|+++||||||+|+++++||||++.|+++|.++|++||++|++
T Consensus 298 ~~~~~~----~~k~l~pNvD~~sa~l~~~lGip~~~~t~lf~~sR~~Gw~AH~~ 347 (377)
T PRK14036 298 VAEERL----GPKGIYPNVDFYSGLVYRKLGIPRDLFTPIFAIARVAGWLAHWR 347 (377)
T ss_pred HHHHHh----ccCCCCcChHHHHHHHHHHcCCChhhhhhHHHHHhHHHHHHHHH
Confidence 997654 56899999999999999999999988888999999999999974
No 16
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=4.8e-90 Score=704.02 Aligned_cols=332 Identities=25% Similarity=0.357 Sum_probs=304.8
Q ss_pred CcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCH
Q 013473 78 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 156 (442)
Q Consensus 78 Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~ 156 (442)
||+||.+.+|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~---------~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC---------EFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 99999999999999999988 599999999999986 59999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCC
Q 013473 157 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 236 (442)
Q Consensus 157 ~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p 236 (442)
.+.++|++||+++|||++|+++|++|++.+++.. +...+...+++++|||++|+|+|++||++.+ ++++.|
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~rlia~~p~i~a~~~r~~~~-~~~i~p 143 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEKE--------DHPVSGARDIADRLMASLGSILLYWYHYSHN-GKRIEV 143 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCcccc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCC
Confidence 9999999999999999999999999998765431 1123456788999999999999999998754 456665
Q ss_pred -CCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 237 -DDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 237 -~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
+++++|++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+
T Consensus 144 ~~~~~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~ 222 (366)
T cd06117 144 ETDDDSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEV 222 (366)
T ss_pred CCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHH
Confidence 6689999999999987 78899999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~~ 390 (442)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++++
T Consensus 223 v~~~l~~i----~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~ 295 (366)
T cd06117 223 AFEIQQRY----E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVM 295 (366)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999875 5 578999999999999999999999999999999999999999874 4578999999999988
Q ss_pred hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 391 ~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+ .||+|||||||+|+++++||||++.|+++|.++|++||++|++
T Consensus 296 ~~-------~k~l~pNvD~~s~~l~~~lG~p~~~~t~lf~isR~~Gw~AH~~ 340 (366)
T cd06117 296 WE-------EKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTTGWSAHII 340 (366)
T ss_pred HH-------HhCCCcCcHHHHHHHHHHcCcChhhhhHHHHHHHHHHHHHHHH
Confidence 54 4799999999999999999999988888899999999999974
No 17
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=5.4e-90 Score=713.54 Aligned_cols=353 Identities=25% Similarity=0.385 Sum_probs=316.3
Q ss_pred HHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013473 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (442)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G 133 (442)
+++++++.| .+++ ..||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|
T Consensus 33 ~~~~~~~~~-----~~~~---~~Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~~---------~feEva~LLl~G 95 (419)
T PRK05614 33 IRKLYGSTG-----YFTY---DPGFTSTASCESKITYIDGDKGILLYRGYPIEQLAEKS---------DFLEVCYLLLYG 95 (419)
T ss_pred hHhhhhccC-----Cccc---CCccCCceeeeeeceeEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcC
Confidence 666776543 3444 46999999999999999999996 99999999999986 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHH
Q 013473 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 213 (442)
Q Consensus 134 ~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~Li 213 (442)
+|||++|+++|+++|.+++.+|+.+.++|+++|++.|||++|+++|++|+.++ ++...+.+ ++...+++++||
T Consensus 96 ~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~------~~~~~~~~-~~~~~~~a~rli 168 (419)
T PRK05614 96 ELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFY------HDSLDIND-PEHREIAAIRLI 168 (419)
T ss_pred cCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcC------ccccCCCC-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998752 22222222 345567899999
Q ss_pred hhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhc
Q 013473 214 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 286 (442)
Q Consensus 214 A~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaS 286 (442)
|++|+|+|++||++.+ .++++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|+++|
T Consensus 169 a~~p~i~A~~~r~~~g-~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~RvvaS 246 (419)
T PRK05614 169 AKMPTLAAMAYKYSIG-QPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRLAGS 246 (419)
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhhhhc
Confidence 9999999999998654 3588999999999999999964 46778999999999999998 9999999999999
Q ss_pred cCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--CCCcccccCCCCCCCCCCcHH
Q 013473 287 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN--SGKVVPGFGHGVLRKTDPRYT 364 (442)
Q Consensus 287 t~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~--~g~~IpGfGH~vyr~~DPRa~ 364 (442)
|++|+|+|++||+++|+||+||||||+|++||.++ + +++++++||+++++ +|++||||||||||..|||++
T Consensus 247 t~adlysav~agi~aL~GplHGGA~e~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DPRa~ 319 (419)
T PRK05614 247 SGANPFACIAAGIAALWGPAHGGANEAVLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDPRAK 319 (419)
T ss_pred cCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999876 5 46899999999976 456999999999999999999
Q ss_pred HHHHHHHhh---CC-CChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcc
Q 013473 365 CQREFALKH---LP-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLT 440 (442)
Q Consensus 365 ~l~~~a~~~---~~-~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~ 440 (442)
+|+++++++ .+ +++++++++++|+++.+ +++++.|+++||||||+|+++++||||.+.|+++|.+||++||++|
T Consensus 320 ~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~--~~~~~~r~l~pNvD~~s~~l~~~lG~p~~~~t~lFa~~R~~Gw~AH 397 (419)
T PRK05614 320 IMRETCHEVLKELGLNDPLLEVAMELEEIALN--DEYFIERKLYPNVDFYSGIILKALGIPTSMFTVIFALARTVGWIAH 397 (419)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh--hhhhccCCCCcChHHHHHHHHHHcCcChhhhcchHHhHhHHHHHHH
Confidence 999999864 33 78999999999998876 6788899999999999999999999999988889999999999999
Q ss_pred cC
Q 013473 441 IL 442 (442)
Q Consensus 441 ~~ 442 (442)
++
T Consensus 398 ~~ 399 (419)
T PRK05614 398 WN 399 (419)
T ss_pred HH
Confidence 74
No 18
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=1.2e-89 Score=715.44 Aligned_cols=375 Identities=27% Similarity=0.390 Sum_probs=329.3
Q ss_pred HhHCHHHHHHHH-HHHHhhCCCcccceeecccccCcc-----cccccceecceecCC----------CC-ceecCCCHHH
Q 013473 45 KEMIPEQQERLK-KVKSELGKAQLGNITVDMVIGGMR-----GMTGLLWETSLLDPD----------EG-IRFRGLSIPE 107 (442)
Q Consensus 45 ~~~ip~~~~~~k-~l~~~~g~~~~g~~tv~~~~~Glr-----g~~~~~t~iS~iD~~----------~G-i~yRGy~I~e 107 (442)
.+.+|+++|.+. ++.++|. +..||+ ||.+.+|+||+||++ +| |+||||+|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----------~~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~d 77 (447)
T PRK14032 9 LSELCEKNNKIDPELYDKYD-----------VKRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKD 77 (447)
T ss_pred HHHHHHHcCCcCHHHHHHhC-----------CCcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHH
Confidence 356777777643 2344443 246999 999999999999984 47 7999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHcCCCCCChHHHHHHHHHHhhhcc
Q 013473 108 CQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQS 186 (442)
Q Consensus 108 La~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~avsal~~~~ 186 (442)
|++++||+ ++.+||||+||||+|+|||++|++.|+++|.+++.+|+. +.++++++| +.|||++|+++|++|++++
T Consensus 78 La~~~~~~---~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~ 153 (447)
T PRK14032 78 LVNGFLKE---KRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYD 153 (447)
T ss_pred HHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcC
Confidence 99999875 355799999999999999999999999999999999999 899999999 7999999999999999754
Q ss_pred hhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHH--hc-CCc--ccCCCCCCCHHHHHHHHhCC---CChHHH
Q 013473 187 EFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRI--YK-DGK--IIPKDDSLDYGGNFSHMLGF---DDPKML 258 (442)
Q Consensus 187 ~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~--~~-~~~--~~~p~~~l~~a~nfl~ml~~---~~~~~~ 258 (442)
+.. .+.+|+..++++++|||++|+|+|++||.+ +. ++. +++|++++||++||++||++ +++..+
T Consensus 154 ~~~--------~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~ 225 (447)
T PRK14032 154 DNP--------DDTSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYTELEA 225 (447)
T ss_pred CCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHH
Confidence 331 124689999999999999999999999942 33 333 34799999999999999975 567889
Q ss_pred HHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 013473 259 ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV 338 (442)
Q Consensus 259 ~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v 338 (442)
++||++||||||||++|+||||+|++|||++|+|+|++||+++|+||+||||||+|++||.++.+..++..+++++++|+
T Consensus 226 ~~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v 305 (447)
T PRK14032 226 RLLDLALVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYL 305 (447)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 99999999999999789999999999999999999999999999999999999999999999976555555788999999
Q ss_pred HHHHh-----CCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhhhhhHHh-cCCCCCCccchhH
Q 013473 339 WKTLN-----SGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVVPPILTK-LGKVKNPWPNVDA 409 (442)
Q Consensus 339 ~~~l~-----~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~~~~~l~~-~~k~k~l~PNVD~ 409 (442)
+++++ +|++||||||||||..|||+++|+++++++. +.++++++++++++++.+++.+ +++.|+++|||||
T Consensus 306 ~~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNVDf 385 (447)
T PRK14032 306 TKILNKEAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANVDF 385 (447)
T ss_pred HHHHhccccccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcChhh
Confidence 99987 5689999999999999999999999998874 4567899999999998776554 4778999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 410 HSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 410 ~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
|+|++++.||||++.|+++|+++|++||++|++
T Consensus 386 ysa~i~~~lGip~~~~t~lFaisR~~Gw~AH~~ 418 (447)
T PRK14032 386 YSGFVYDMLGIPEELYTPLFAIARIVGWSAHRI 418 (447)
T ss_pred HHHHHHHHcCCChhhhhhhHHHHhHHHHHHHHH
Confidence 999999999999998888999999999999974
No 19
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=1.3e-89 Score=699.68 Aligned_cols=330 Identities=25% Similarity=0.399 Sum_probs=303.9
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
+||+||.+++|+||+||+++| |+||||+|+||+++. +||||+||||+|+|||++|+++|+.+|.+++.+|
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~---------sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 71 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA---------TFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLP 71 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 499999999999999999997 699999999999975 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc-
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII- 234 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~- 234 (442)
+++.+++++||++.|||++|+++|++|++.++.. . -+..++++++|||++|+|+|++||+++++ .++
T Consensus 72 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~~~--~---------~~~~~~~a~rlia~~p~i~a~~~r~~~~~-~~~~ 139 (363)
T cd06108 72 AALKTVLELIPKDSHPMDVMRTGCSMLGCLEPEN--E---------FSQQYEIAIRLLAIFPSILLYWYHYSHSG-KRIE 139 (363)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhhcCCcc--c---------cHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccC
Confidence 9999999999999999999999999998754321 0 13456899999999999999999988654 555
Q ss_pred CCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 235 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
++++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||+
T Consensus 140 p~~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e 218 (363)
T cd06108 140 TETDEDSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANE 218 (363)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHH
Confidence 457889999999999987 78889999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHHh
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEV 389 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~---~~~~~~~~l~~~l~~~ 389 (442)
+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++ .+++++++++++++++
T Consensus 219 ~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~ 291 (363)
T cd06108 219 AAMELIERF----K---SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEV 291 (363)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999886 4 56899999999999999999999999999999999999999876 3568999999999998
Q ss_pred hhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 390 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 390 ~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.+ .|+++||||||+|++++++|||.+.|+++|.++|++||++|++
T Consensus 292 ~~~-------~~~l~pNvD~~sa~l~~~lG~p~~~~t~iF~i~R~~Gw~AH~~ 337 (363)
T cd06108 292 MWE-------EKKLFPNLDFYSASAYHFCGIPTELFTPIFVMSRVTGWAAHIM 337 (363)
T ss_pred HHH-------hcCCCcChHHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 854 3899999999999999999999998888999999999999974
No 20
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=2.2e-89 Score=701.55 Aligned_cols=339 Identities=28% Similarity=0.419 Sum_probs=313.4
Q ss_pred ccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
.+||+|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|++||++|++.|+.+|.+++.+
T Consensus 2 ~~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~l 72 (373)
T cd06112 2 IPGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYS---------SFEEVALLLLDGDLPTAAELEEFDKELRQHRRV 72 (373)
T ss_pred CCccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 36999999999999999999995 99999999999885 699999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~ 234 (442)
|++|.++|++||++.|||++|+++|++|++.+++... .+ ++|+..++++++|||++|+|+|++||++.+ .+++
T Consensus 73 p~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~-----~~-~~~~~~~~~a~~liA~~p~i~a~~~r~~~g-~~~~ 145 (373)
T cd06112 73 KYNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPEV-----LK-PNPDYIDAATVKLIAKMPTLVAMWARIRNG-DDPI 145 (373)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHhhhccCccccc-----cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCc
Confidence 9999999999999999999999999999987665311 11 468899999999999999999999887654 3588
Q ss_pred CCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 235 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
.|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||
T Consensus 146 ~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e 224 (373)
T cd06112 146 EPRPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANE 224 (373)
T ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHH
Confidence 999999999999999987 78889999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCC----CChHHHHHHHHHH
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP----DDPLFQLVSKLFE 388 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~----~~~~~~l~~~l~~ 388 (442)
+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.. .++++++++++++
T Consensus 225 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~ 297 (373)
T cd06112 225 DVLEMLEEI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVER 297 (373)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 999999876 5 5789999999999999999999999999999999999999998853 4789999999998
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+ +++.|+++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 298 ~~~~----~~~~k~l~pNvd~~s~~l~~~lG~p~~~~t~lF~isR~~Gw~AH~~ 347 (373)
T cd06112 298 LCEE----LLGHKGVYPNVDFYSGIVYKELGIPADLFTPIFAVARVAGWLAHWK 347 (373)
T ss_pred HHHH----HhCcCCCCcChHHHHHHHHHHhCcChHhhchHHHHHhHHHHHHHHH
Confidence 8855 3466899999999999999999999998888999999999999973
No 21
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=7.9e-89 Score=695.76 Aligned_cols=334 Identities=25% Similarity=0.348 Sum_probs=308.7
Q ss_pred cccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
+..||+|+.+++|+||+||++ +|+||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.+
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~-~L~YRGy~i~dLa~~~---------~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~l 72 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS-QLTYAGYDIDDLAENA---------SFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTL 72 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC-EeEECCccHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCC
Confidence 468999999999999999986 5999999999999985 699999999999999999999999999999999
Q ss_pred CHHHHHHHHcCC-CCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 155 PDYVYKAIDALP-VTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 155 p~~v~~~i~~lP-~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
|+.|.+++..+| ++.|||++|+++|++|+..+++. .+.+|+..++++++|||++|+|+|++||++.+ .++
T Consensus 73 p~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~--------~~~~~~~~~~~a~rliA~~p~i~A~~~r~~~g-~~~ 143 (371)
T PRK14035 73 NDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDA--------EEESDEARYERAIRIQAKVASLVTAFARVRQG-KEP 143 (371)
T ss_pred CHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC
Confidence 999999999976 68999999999999999876542 13468889999999999999999999998643 358
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
+.|++++||++||++||++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 144 ~~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~ 222 (371)
T PRK14035 144 LKPRPDLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGAN 222 (371)
T ss_pred CCCCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChH
Confidence 8999999999999999987 78888999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~ 388 (442)
|+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~ 295 (371)
T PRK14035 223 ERVMDMLSEI----R---SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEK 295 (371)
T ss_pred HHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 9999999886 4 468999999999999999999999999999999999999999874 56799999999999
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+ .||++||||||+|++++++|||++.|+++|.++|++||++|++
T Consensus 296 ~~~~-------~k~l~pNvD~~s~~l~~~lG~p~~~~t~lf~i~R~~Gw~AH~~ 342 (371)
T PRK14035 296 RMKE-------EKGLIPNVDFYSATVYHVMGIPHDLFTPIFAVSRVAGWIAHIL 342 (371)
T ss_pred HHHH-------hcCCCCChHHHHHHHHHHcCCChHhhhhHHHHHhHHHHHHHHH
Confidence 8854 3799999999999999999999998888999999999999974
No 22
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=2.1e-88 Score=700.23 Aligned_cols=350 Identities=26% Similarity=0.386 Sum_probs=315.7
Q ss_pred cccccceeccee------cCC----CC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 013473 81 GMTGLLWETSLL------DPD----EG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELR 149 (442)
Q Consensus 81 g~~~~~t~iS~i------D~~----~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~ 149 (442)
||.+.+|.||+| |++ +| |+||||+|+||++++||+ ++++||||+||||+|+|||++|+++|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 678999999999 898 88 599999999999999874 3568999999999999999999999999999
Q ss_pred hhCCCCHHH-HHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHh
Q 013473 150 DRATVPDYV-YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIY 228 (442)
Q Consensus 150 ~~~~lp~~v-~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~ 228 (442)
+++.+|+.+ .++++++|. .|||++|+++|++|+.+++. .++.+|+..++++++|||++|+|+|++||.+.
T Consensus 87 ~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~--------~~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~ 157 (406)
T cd06113 87 SYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDK--------PDDISLENVLRQSIQLIARLPTIAVYAYQAKR 157 (406)
T ss_pred HhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCC--------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999985 669999995 99999999999999976432 23457999999999999999999999999643
Q ss_pred --cCCc---ccCCCCCCCHHHHHHHHhCC---CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHh
Q 013473 229 --KDGK---IIPKDDSLDYGGNFSHMLGF---DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 300 (442)
Q Consensus 229 --~~~~---~~~p~~~l~~a~nfl~ml~~---~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~ 300 (442)
.+++ +++|++++||++||++||++ |++..+++||++||||||||++|+||||+|+++||++|+|+|++||++
T Consensus 158 ~~~~~~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~ 237 (406)
T cd06113 158 HYYDGESLYIHHPQPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIG 237 (406)
T ss_pred hhccCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHH
Confidence 1222 45799999999999999976 567889999999999999998899999999999999999999999999
Q ss_pred hhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-----CcccccCCCCCCCCCCcHHHHHHHHHhhC-
Q 013473 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG-----KVVPGFGHGVLRKTDPRYTCQREFALKHL- 374 (442)
Q Consensus 301 aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g-----~~IpGfGH~vyr~~DPRa~~l~~~a~~~~- 374 (442)
+|+||+||||||+|++||.++.+..+++.+++++++|++++++++ ++||||||||||..|||+++|+++++++.
T Consensus 238 al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~ 317 (406)
T cd06113 238 SLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAK 317 (406)
T ss_pred HccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999766666667899999999999876 59999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHhhhhhHHh-cCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 375 --PDDPLFQLVSKLFEVVPPILTK-LGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 375 --~~~~~~~l~~~l~~~~~~~l~~-~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.++++++++++++++.+++.+ +++.|+++||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 318 ~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p~~~~t~lF~isR~~Gw~AH~~ 388 (406)
T cd06113 318 EKGREEEFALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIPQELYTPLFAVARIVGWCAHRI 388 (406)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCChhhhhhHHHHHhHHHHHHHHH
Confidence 4567999999999999887655 4889999999999999999999999988888999999999999974
No 23
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=4.3e-88 Score=690.57 Aligned_cols=334 Identities=26% Similarity=0.397 Sum_probs=306.7
Q ss_pred cccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
+..||+|+.+.+|.||+||++ +|+||||+|+||+++. +||||+||||+|+|||++|+++|+++|..++.+
T Consensus 3 ~~~GL~gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~l 72 (372)
T PRK14034 3 VTRGLEGVVATTSSVSSIIDD-TLTYVGYNIDDLAENA---------SFEEVVYLLWHRKLPNKQELAEFKEQLSENAKV 72 (372)
T ss_pred CCCCCCCceEeeeEeeccCCC-eEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence 346999999999999999855 6999999999999875 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCC-CCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 155 PDYVYKAIDALPV-TAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 155 p~~v~~~i~~lP~-~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
|+++.++++.||+ +.|||++|+++|++|+..+++.. ...++..++++++|||++|+|+|++||+..+ .++
T Consensus 73 p~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g-~~~ 143 (372)
T PRK14034 73 PGEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEAE--------IMDEEANYRKAVRLQAKVPTIVAAFSRIRKG-LDP 143 (372)
T ss_pred CHHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Confidence 9999999999997 59999999999999998765431 1234678899999999999999999887643 468
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++|++++||++||++|+++ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||
T Consensus 144 ~~p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~ 222 (372)
T PRK14034 144 VEPRKDLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGAN 222 (372)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHH
Confidence 8999999999999999987 78889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~ 388 (442)
++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++
T Consensus 223 e~~~~~l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~ 295 (372)
T PRK14034 223 ENVMKMLTEI----G---EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEE 295 (372)
T ss_pred HHHHHHHHHh----C---CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999876 5 568999999999999999999999999999999999999999874 56799999999999
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+ .|+++||||||+|+++++||||++.|+++|.++|++||++|++
T Consensus 296 ~~~~-------~k~l~pNvD~~~a~l~~~lG~p~~~~t~lf~i~R~~Gw~AH~~ 342 (372)
T PRK14034 296 IVTK-------EKGLPPNVDFYSASVYHCLGIDHDLFTPIFAISRMSGWLAHIL 342 (372)
T ss_pred HHHH-------cCCCCCChHHHHHHHHHHcCCChHhccchhHHHhHHHHHHHHH
Confidence 8854 4799999999999999999999998888999999999999974
No 24
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=7.5e-88 Score=694.93 Aligned_cols=341 Identities=28% Similarity=0.409 Sum_probs=311.4
Q ss_pred cccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
+..||+|+++++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.
T Consensus 27 ~~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~---------sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~ 97 (400)
T cd06114 27 YDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKS---------SFLEVCYLLLYGELPTAEQLQEFREEITRHTL 97 (400)
T ss_pred CCCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHccC
Confidence 357999999999999999999995 99999999999985 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
+|+.+.++|+.+|++.|||++|+++|++|+..++. ... ...|+..++++++|||++|+|+|++||++.+. ++
T Consensus 98 lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~------~~~-~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~-~~ 169 (400)
T cd06114 98 VHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPD------SLD-VNDPEQRELAAIRLIAKVPTIAAMAYRYSIGQ-PF 169 (400)
T ss_pred CCHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCcc------ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 99999999999999999999999999999975422 111 13578889999999999999999999987643 57
Q ss_pred cCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhcccc
Q 013473 234 IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPL 306 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPl 306 (442)
++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+
T Consensus 170 ~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~Gpl 248 (400)
T cd06114 170 IYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPL 248 (400)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCc
Confidence 8899999999999999974 36788999999999999998 999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCCcHHHHHHHHHhh---C-CCChHH
Q 013473 307 HGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYTCQREFALKH---L-PDDPLF 380 (442)
Q Consensus 307 HGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~~l~~~a~~~---~-~~~~~~ 380 (442)
|||||++|++||.++ + +++++++||++.+++| ++||||||||||..|||+++|+++++++ . .+++++
T Consensus 249 HGGA~~~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 321 (400)
T cd06114 249 HGGANEAVLEMLEEI----G---SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLL 321 (400)
T ss_pred ccChHHHHHHHHHHh----c---CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999876 4 3579999999999987 5999999999999999999999999875 2 347899
Q ss_pred HHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 381 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 381 ~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++++++++++.+ .++++.|+++||||||+|+++++||||++.|+++|.++|++||++|++
T Consensus 322 ~~~~~ie~~~~~--~~~~~~~~l~pNvD~~~a~l~~~lG~p~~~~~~lFa~sR~~Gw~AH~~ 381 (400)
T cd06114 322 EIAMELEEIALK--DDYFIERKLYPNVDFYSGIILRALGIPTEMFTVLFALGRTPGWIAQWR 381 (400)
T ss_pred HHHHHHHHHHHH--hhhhcccCCCCChHHHHHHHHHHcCCChHhhhhhHHHHhHHHHHHHHH
Confidence 999999998866 667788999999999999999999999998888999999999999974
No 25
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=1.3e-87 Score=688.59 Aligned_cols=335 Identities=25% Similarity=0.374 Sum_probs=305.5
Q ss_pred cccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
+.+||+|+++.+|+||+||+++|+ +||||+|+||+++. +||||+||||+|++||++|++.|+.+|..++.
T Consensus 4 ~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~ 74 (377)
T PRK14037 4 ISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGELPTKKELNDLKEKLNEEYE 74 (377)
T ss_pred CCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 568999999999999999999995 99999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCC-cchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~-e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~ 232 (442)
+|+++.++|++||++.|||++|+++|++|++.++- .+| +..++++++|||++|+|+|++||++.+. .
T Consensus 75 lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~-----------~~~~~~~~~~a~~liA~~p~i~a~~yr~~~g~-~ 142 (377)
T PRK14037 75 VPQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKN-----------FKWKENDKEKAISIIAKMATIVANVYRRKEGN-K 142 (377)
T ss_pred CCHHHHHHHHhCCccCCcHHHHHHHHHhhhccCCc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 99999999999999999999999999999975311 123 3457899999999999999999987653 5
Q ss_pred ccCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCc
Q 013473 233 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310 (442)
Q Consensus 233 ~~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgA 310 (442)
++.|++++||++||++||.+ |++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||
T Consensus 143 ~~~p~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA 221 (377)
T PRK14037 143 PRIPEPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGA 221 (377)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCCh
Confidence 77899999999999999976 78899999999999999998 8999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---C-CChHHHHHHH
Q 013473 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSK 385 (442)
Q Consensus 311 ne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~-~~~~~~l~~~ 385 (442)
||+|++||+++ + +++++++|+++.+ ++|++||||||||||..|||+++|+++++++. + .+++++++.+
T Consensus 222 ~e~v~~~l~ei----~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~ 294 (377)
T PRK14037 222 AEEAFKQFVEI----G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQK 294 (377)
T ss_pred HHHHHHHHHHh----c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999876 5 4689999998865 45589999999999999999999999999874 3 4689999999
Q ss_pred HHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 386 l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++++.+ +++.|+++||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 295 ~e~~~~~----~~~~k~l~pNvD~~sa~l~~~lG~p~~~~t~lf~isR~~Gw~AH~~ 347 (377)
T PRK14037 295 LEELGIK----QFGSKGIYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHII 347 (377)
T ss_pred HHHHHHH----HhhccCCCCChHHHHHHHHHHcCCChhhcchhHHhhhhhHHHHHHH
Confidence 9988754 3456899999999999999999999998888999999999999974
No 26
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=2.3e-86 Score=677.04 Aligned_cols=336 Identities=33% Similarity=0.514 Sum_probs=294.1
Q ss_pred CcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCH
Q 013473 78 GMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPD 156 (442)
Q Consensus 78 Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~ 156 (442)
||+|+++++|+||.||+++| ++||||+|+||+++. +||||+||||+|++||++|+++|+++|.+++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~---------sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENA---------SFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS---------BHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC---------CHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 89999999999999999999 799999999999975 69999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCC
Q 013473 157 YVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK 236 (442)
Q Consensus 157 ~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p 236 (442)
.|.+++++||+++|||++|++++++|+..+++ ..+..+|+..++++++|+|++|+|+|++|++..+ .++++|
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~-------~~~~~~~~~~~~~~~~liA~~p~i~a~~~~~~~g-~~~~~p 143 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPD-------PLYDNSPEDVLEDAIRLIAKIPTIVAAIYRHRRG-QPPIPP 143 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTT-------GTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-----
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhc-------cccccchhHHHHHHHHHhhcchHHHHHHHHHhCC-CCcccc
Confidence 99999999999999999999999999987654 1235678999999999999999999999999843 357889
Q ss_pred CCCCCHHHHHHHHh--CC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 237 DDSLDYGGNFSHML--GF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 237 ~~~l~~a~nfl~ml--~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
+++++|++||++|| .+ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||++
T Consensus 144 ~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~ 222 (356)
T PF00285_consen 144 DPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANE 222 (356)
T ss_dssp -TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHH
T ss_pred ccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCcccccccH
Confidence 99999999999999 33 68899999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 389 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~ 389 (442)
+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++|++
T Consensus 223 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~ 295 (356)
T PF00285_consen 223 AAMRMLQEI----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEA 295 (356)
T ss_dssp HHHHHHHHH----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Confidence 999999987 5 578999999999999999999999999999999999999999987 789999999999999
Q ss_pred hhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 390 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 390 ~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.+.+.+ |+++||||||+|++++.+|||++.++++|.+||++||++|++
T Consensus 296 ~~~~~~~----~~l~pNvd~~~a~l~~~lG~p~~~~~~if~~~R~~Gw~AH~~ 344 (356)
T PF00285_consen 296 APEDFKE----RKLYPNVDFYSAALLRALGFPPELFTAIFALSRTAGWIAHIL 344 (356)
T ss_dssp HHHHHHH----HTESB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccccCchhhHHHHHHHHHhcchhhchHHHHHHHHHHHHHHHH
Confidence 9886643 579999999999999999999988888899999999999974
No 27
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=5.3e-85 Score=668.30 Aligned_cols=334 Identities=26% Similarity=0.376 Sum_probs=305.7
Q ss_pred ccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
..||+|+.+++|+||+||+++| |+||||+|+||+++. +||||+||||+|+|||++|++.|+++|.+++.+
T Consensus 6 ~~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~~---------sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~~ 76 (369)
T PRK12349 6 SPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTK---------EYLDIVHLLLEEHLPNEDEKATLEKKLKEEYAV 76 (369)
T ss_pred CCccCCCeeeeeeceeEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Confidence 4699999999999999999888 699999999999986 599999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~ 234 (442)
|+.|.++++.+|++.|||++|+++|++++..++.. + +..++...+++++|||++|+|+|++||+..+ .+++
T Consensus 77 p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g-~~~~ 147 (369)
T PRK12349 77 PEGVFNILKALPKETHPMDGLRTGVSALAGYDNDI--E------DRSLEVNKSRAYKLLSKVPNIVANSYHILNN-EEPI 147 (369)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCccc--c------ccCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC
Confidence 99999999999999999999999999999876543 1 2345678899999999999999999998754 3588
Q ss_pred CCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 235 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
.|+++++|++||++|+++ |++..+++||.+|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 148 ~p~~~l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e 226 (369)
T PRK12349 148 EPLKELSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANE 226 (369)
T ss_pred CCCcCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHH
Confidence 899999999999999976 68889999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC-CCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL-RKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vy-r~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~ 388 (442)
+|++||.++ + +++++++||++.+++|++||||||||| +..|||+++|++.++++. +..+++++++++++
T Consensus 227 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~ 299 (369)
T PRK12349 227 AVMYMLLEA----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEK 299 (369)
T ss_pred HHHHHHHHc----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999876 4 568999999999999999999999999 668999999999997763 34578888888887
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+ .||++||||||+|++++.||||++.++++|.++|++||++|++
T Consensus 300 ~~~~-------~~gl~pNvD~~~a~l~~~lG~p~~~~~~lf~i~R~~Gw~AH~~ 346 (369)
T PRK12349 300 IMEK-------EKGLYPNLDYYAAPVYWMLGIPIQLYTPIFFSSRTVGLCAHVI 346 (369)
T ss_pred HHHH-------hcCCCCCcHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHH
Confidence 7754 4789999999999999999999998889999999999999974
No 28
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=5.8e-85 Score=666.52 Aligned_cols=333 Identities=23% Similarity=0.346 Sum_probs=307.8
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
.||+||++.+|+||++|+++| ++||||||+||++++ +||||+||||+|++|+++|++.|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp 71 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENC---------SFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLD 71 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 499999999999999999887 799999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+++.++++.+|++.|||++++++|++++..++.. .+..|+...+++++|||++|+|+|++||++.+ ..+++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~~~ 142 (362)
T cd06111 72 RNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSET--------DDSSPDANLAKAIRLLAQLPTVVAADIRRRKG-LDPIP 142 (362)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhhccCccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcC
Confidence 9999999999999999999999999999876542 13467889999999999999999999998754 35888
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||++
T Consensus 143 p~~~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~ 221 (362)
T cd06111 143 PDSDLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEA 221 (362)
T ss_pred CCCCcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHH
Confidence 99999999999999965 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~~ 390 (442)
|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++++
T Consensus 222 ~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~ 294 (362)
T cd06111 222 VMHMMLEI----D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAM 294 (362)
T ss_pred HHHHHHHh----C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHH
Confidence 99999876 5 467999999999999999999999999999999999999988763 3568999999999877
Q ss_pred hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 391 ~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+ .||++||||||+|++++.||||.+.++++|+++|++||++|++
T Consensus 295 ~~-------~~~l~pNvD~~~a~l~~~lG~p~~~~~~lf~~~R~~Gw~AH~~ 339 (362)
T cd06111 295 VA-------AKGIKPNLDFPAGPAYYLMGFDIDFFTPIFVMARITGWTAHIM 339 (362)
T ss_pred HH-------hcCCCCChHHHHHHHHHHcCcChhhhhhHHHHHHHHHHHHHHH
Confidence 54 3789999999999999999999999999999999999999974
No 29
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=2.9e-84 Score=661.73 Aligned_cols=336 Identities=37% Similarity=0.567 Sum_probs=311.6
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
+||+|+++++|+||+||+++| ++||||+|+||+++. +||||+||||+|++||++|++.|+.+|..++.+|
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p 71 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKS---------SFEEVAYLLLYGKLPTKEELAEFKKKLASHRALP 71 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 599999999999999999987 799999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+.+.++++.+|++.|||++|+++|++++.++++. .+.+|+...+++++|||++|+|++++|+++.+ ..++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~--------~~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~~~ 142 (358)
T cd06118 72 EHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFA--------RDKSPEARYEKAIRLIAKLPTIAANIYRNREG-LEIIA 142 (358)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHhhhccCCcc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCC
Confidence 9999999999999999999999999999876543 23568889999999999999999999998644 35778
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
|+++++|++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||+++
T Consensus 143 p~~~~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~ 221 (358)
T cd06118 143 PDPDLSYAENFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEA 221 (358)
T ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHH
Confidence 99999999999999988 89999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCC---CChHHHHHHHHHHhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 390 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~---~~~~~~l~~~l~~~~ 390 (442)
|++||.++ + +++++++||++.+++|++||||||+|||..|||+++|+++++++.. .++++++++++++++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~ 294 (358)
T cd06118 222 VLKMLLEI----G---TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIA 294 (358)
T ss_pred HHHHHHHh----C---CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999886 4 3579999999999999999999999999999999999999998754 589999999999999
Q ss_pred hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 391 ~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+.. + .|+++||||||+|++++++|||++.|+++|+++|++||++|++
T Consensus 295 ~~~~--~--~r~l~pNvd~~~~~l~~~lg~p~~~~~~lf~i~R~~Gw~AH~~ 342 (358)
T cd06118 295 LEVL--G--EKGIYPNVDFYSGVVYKALGFPTELFTPLFAVSRAVGWLAHII 342 (358)
T ss_pred HHhh--c--CCCCCcChHHHHHHHHHHcCcCHHHHhHHHHHHHHhHHHHHHH
Confidence 7742 2 2799999999999999999999998889999999999999974
No 30
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=9.8e-84 Score=659.36 Aligned_cols=333 Identities=28% Similarity=0.440 Sum_probs=308.6
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
.||+|+++++|+||++|+++| |+||||||+||+++. +||||+||||+|++|+++|++.|..+|..++.+|
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHA---------SFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLP 71 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCC
Confidence 499999999999999999999 699999999999985 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+.+.++++.||++.|||++|+++|++++.+++.. + +..++...+++++|||++|+|+|++||++.+ .+++.
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~~~~~g-~~~~~ 142 (368)
T TIGR01800 72 DEVIELIEALPAESHPMDALRTAVSYLGALDPEA--F------GHTPEEARDIAIRLIAKLPTIVAYWYRIRNG-LEIVA 142 (368)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhhccCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcC
Confidence 9999999999999999999999999999876542 1 2235678899999999999999999998754 45788
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
|+++++|++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||++.
T Consensus 143 p~~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~ 221 (368)
T TIGR01800 143 PKEDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEA 221 (368)
T ss_pred CCCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHH
Confidence 99999999999999987 58889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~~ 390 (442)
|++||.++ + +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +.++++++++++++++
T Consensus 222 ~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 294 (368)
T TIGR01800 222 VMAMLDEI----G---DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVM 294 (368)
T ss_pred HHHHHHHh----c---ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999876 4 467899999999999999999999999999999999999999873 4678999999999988
Q ss_pred hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 391 ~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+ .||++||||||+|++++.||||++.|+++|+++|++||++|++
T Consensus 295 ~~-------~~~l~pNvD~~~a~l~~~lg~p~~~~~~lf~~~R~~Gw~AH~~ 339 (368)
T TIGR01800 295 EK-------EKGIYPNVDFYSGSVYYSMGIPTDLFTPIFAMSRVSGWTAHII 339 (368)
T ss_pred HH-------hcCCCCChHHHHHHHHHHcCcCHHHhhhHHHHHHHHHHHHHHH
Confidence 65 3789999999999999999999999999999999999999974
No 31
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=2.9e-83 Score=656.38 Aligned_cols=335 Identities=23% Similarity=0.330 Sum_probs=309.6
Q ss_pred cccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
+..||+|+.+++|+||.||+++| ++||||+|+||+++. +||||+||||+|++|+.+|++.|..+|.+++.
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~---------sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~ 79 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAARC---------SFEEVAYLLWNGELPTDAELALFSQRERAYRR 79 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 56899999999999999999887 699999999999986 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
+|+++.++++.+|++.|||++++++|++++..++.. + +..|+...+++++|||++|+|+|++||++.+ ..+
T Consensus 80 ~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~--~------~~~~~~~~~~a~~lia~~~~i~a~~~~~~~g-~~~ 150 (375)
T PRK14033 80 LDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEA--D------DSSPEANLAKALRLFAVLPTIVAADQRRRRG-LDP 150 (375)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999999999999876542 1 2457888999999999999999999998744 358
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++|+++++|++||++|+++ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||+
T Consensus 151 ~~p~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~ 229 (375)
T PRK14033 151 IAPRSDLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGAN 229 (375)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChH
Confidence 8899999999999999966 68889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHH
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFE 388 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~ 388 (442)
++|++||.++ + +++++++||++.+++|++||||||||||..|||+++|++.++++. +.++++++++++++
T Consensus 230 e~~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~ 302 (375)
T PRK14033 230 EAVMHTMLEI----G---DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEK 302 (375)
T ss_pred HHHHHHHHHh----C---ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 9999999876 5 578999999999999999999999999999999999999988764 45789999999999
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+ .+|++||||||+|++++.+|||++.|.++|+++|++||++|++
T Consensus 303 ~~~~-------~~gl~pNvD~~~a~l~~~lGip~~~~~~lf~~~R~~Gw~AH~~ 349 (375)
T PRK14033 303 AMAE-------ATGIKPNLDFPAGPAYYLMGFDIDFFTPIFVMSRITGWTAHIM 349 (375)
T ss_pred HHHH-------HhCCCCCcHHHHHHHHHHcCcCchhhhHHHHHHHHHHHHHHHH
Confidence 8855 3789999999999999999999999999999999999999974
No 32
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=3.8e-83 Score=652.94 Aligned_cols=333 Identities=26% Similarity=0.396 Sum_probs=308.5
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
+||+|+++++|+||.+|+++| ++||||||+||+++. +||||+||||+|++|+++|++.|..+|..++.+|
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENS---------TFEEVAYLLWNGELPTAEELDAFKAQLAAERELP 71 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCC
Confidence 599999999999999999999 599999999999885 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+.+.++++.+|++.|||++|++++++++..++.. .+..|+..++++++|||++|+|+|++|+...+ .+++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~--------~~~~~~~~~~~a~~lla~~p~i~a~~~~~~~~-~~~~~ 142 (356)
T cd06110 72 AEIIDLLKLLPKDAHPMDVLRTAVSALALYDPEA--------DDMSREANLRKAIRLIAKMPTIVAAFHRIRNG-LEPVA 142 (356)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCC
Confidence 9999999999999999999999999998754321 23468899999999999999999999887644 45888
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
|+++++|++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||+.
T Consensus 143 p~~~~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~ 221 (356)
T cd06110 143 PDPDLSHAANFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANER 221 (356)
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHH
Confidence 99999999999999976 68889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEVV 390 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~~ 390 (442)
|++||.++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++++++
T Consensus 222 ~~~~l~~~----~---~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~ 294 (356)
T cd06110 222 VMKMLLEI----G---SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAM 294 (356)
T ss_pred HHHHHHHh----C---CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999886 4 568999999999999999999999999999999999999999873 5679999999999988
Q ss_pred hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 391 ~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+ .||++||||||+|++++.||||++.|+++|+++|++||++|++
T Consensus 295 ~~-------~~~l~pNvd~~~a~l~~~lg~p~~~~~~lf~i~R~~Gw~AH~~ 339 (356)
T cd06110 295 RD-------EKGLNPNVDFYSASVYYMLGIPVDLFTPIFAISRVSGWCAHIL 339 (356)
T ss_pred HH-------ccCCCcChHHHHHHHHHHcCcChhhhhHHHHHHHHHHHHHHHH
Confidence 65 3799999999999999999999999999999999999999974
No 33
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=4.4e-83 Score=648.27 Aligned_cols=318 Identities=24% Similarity=0.293 Sum_probs=277.6
Q ss_pred cCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHH---HHHHHHHhhC
Q 013473 77 GGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVD---GLSKELRDRA 152 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~---~~~~~l~~~~ 152 (442)
+||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|+|||+.|.+ .++..+.
T Consensus 3 ~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~---------sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~--- 70 (353)
T PRK12350 3 PGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGRV---------TFEDVWALLVDGRFGPGLPPAEPFPLPVHLG--- 70 (353)
T ss_pred CCCCCceeEeeeCcceeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCcchhhhccchHHHhh---
Confidence 6999999999999999999995 99999999999986 599999999999999987544 3333322
Q ss_pred CCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 013473 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (442)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~ 232 (442)
..+..+...+.. .|||+.|++++ + . ...+++++|||++|+|+|++||++.++.+
T Consensus 71 ~~~~~~~~~~~~----~~~~~~l~~~~------~------------~----~~~~~~~rliA~~pti~a~~~r~~~g~~~ 124 (353)
T PRK12350 71 DARVDVQAALAM----LAPVWGFRPLL------D------------I----DDLTARLDLARASVMALSAVAQSARGIGQ 124 (353)
T ss_pred ccchhhhhhHHH----hhHHHHHHhhc------C------------C----CCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 233333333332 45666666643 0 0 11357799999999999999999876346
Q ss_pred ccCCCCCCCHHHHHHHHhCC-----CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccc
Q 013473 233 IIPKDDSLDYGGNFSHMLGF-----DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLH 307 (442)
Q Consensus 233 ~~~p~~~l~~a~nfl~ml~~-----~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlH 307 (442)
+++|+++++|++||++||.+ |++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+|
T Consensus 125 ~i~p~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTfaaRv~aSt~adlysav~agi~aL~GplH 203 (353)
T PRK12350 125 PAVPQREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTFTARVIASTGADVAAALSGAIGALSGPLH 203 (353)
T ss_pred CcCCCCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCC-CCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcc
Confidence 88999999999999999965 47788999999999999998 9999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHH
Q 013473 308 GLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLF 387 (442)
Q Consensus 308 GgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~ 387 (442)
|||||+|++||.++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++|
T Consensus 204 GGA~e~v~~ml~ei----~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~--~~~~~ia~~le 274 (353)
T PRK12350 204 GGAPARVLPMLDAV----E---RTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG--APRYEVAEAVE 274 (353)
T ss_pred cChHHHHHHHHHHh----C---ChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC--ChHHHHHHHHH
Confidence 99999999999876 5 568999999999999999999999999999999999999999985 69999999999
Q ss_pred HhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 388 EVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 388 ~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++.+.+++++..|+++||||||+|++++.+|||.+.|+++|.++|++||++|++
T Consensus 275 ~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~~~ft~lFai~R~~Gw~AH~~ 329 (353)
T PRK12350 275 QAALAELRERRPDRPLETNVEFWAAVLLDFAGVPAHMFTAMFTCGRTAGWSAHIL 329 (353)
T ss_pred HHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcChhhhcchHHhhhHHHHHHHHH
Confidence 9998877778778999999999999999999999998888999999999999974
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=2.6e-67 Score=516.73 Aligned_cols=243 Identities=41% Similarity=0.647 Sum_probs=225.3
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
+||+|+++++|+||.+|+++| ++||||||+||++++ +||||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~---------~f~ev~~LL~~G~lP------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAENS---------SFEEVAYLLLTGELP------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCC-------------------
Confidence 599999999999999999987 699999999999986 599999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
T Consensus 53 -------------------------------------------------------------------------------- 52 (265)
T cd06101 53 -------------------------------------------------------------------------------- 52 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
+|++||++|+++ +++.++++||.+||+||||| +|+||||+|+++||++|+|+|++||+++|+||+|||||++
T Consensus 53 -----~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg-~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~ 126 (265)
T cd06101 53 -----SYAENFLYMLGGEEPDPEFAKAMDLALILHADHE-GNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEA 126 (265)
T ss_pred -----cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHH
Confidence 689999999987 78899999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCC---CChHHHHHHHHHHhh
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVV 390 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~---~~~~~~l~~~l~~~~ 390 (442)
|++||.++.+. ..++++++|++.+++|++||||||||||..|||+++|+++++++.. +++++++++++++++
T Consensus 127 ~~~~l~~i~~~-----~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~ 201 (265)
T cd06101 127 VLKMLEEIGTP-----KNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIA 201 (265)
T ss_pred HHHHHHHhCcc-----ccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999987321 2368899999999999999999999999999999999999998753 589999999999998
Q ss_pred hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 391 ~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+.. + .|+++||||||+|++++.||||++.|+++|+++|++||++|++
T Consensus 202 ~~~~--~--~k~l~pNvd~~~a~v~~~lG~p~~~~~~lf~i~R~~Gw~AH~~ 249 (265)
T cd06101 202 PEVL--Y--EKKLYPNVDFYSGVLYKAMGFPTELFTPLFAVSRAVGWLAHLI 249 (265)
T ss_pred HHHh--h--ccCCCCChHHHHHHHHHHhCCChHhhhhHHHHHhHhHHHHHHH
Confidence 7642 1 3899999999999999999999999999999999999999974
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1.3e-60 Score=471.57 Aligned_cols=250 Identities=25% Similarity=0.300 Sum_probs=219.9
Q ss_pred ccccccceecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHH
Q 013473 80 RGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVY 159 (442)
Q Consensus 80 rg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~ 159 (442)
+|.++++|.||.|++ ++++|||||+.||+++. +||+|+||||+|++|
T Consensus 16 ~g~~~~~t~It~i~~-~~~~yRG~da~~L~~~~---------~~e~va~LLw~g~~~----------------------- 62 (282)
T cd06102 16 WGEPVLESAITLITE-GRLFYRGRDAVELAETA---------TLEEVAALLWDGDEA----------------------- 62 (282)
T ss_pred cCCceEEeeeEEEeC-CeeEEcCccHHHHHhcC---------CHHHHHHHHHcCCch-----------------------
Confidence 577899999999975 45999999999999986 599999999999998
Q ss_pred HHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCC
Q 013473 160 KAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDS 239 (442)
Q Consensus 160 ~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~ 239 (442)
...+ +.++ +.. .+ .+.++
T Consensus 63 ----------------~~~l-------------------------------~~~~------~~~------~~---~~~~~ 80 (282)
T cd06102 63 ----------------ARLL-------------------------------RLLA------AAL------LG---AAPSD 80 (282)
T ss_pred ----------------HHHH-------------------------------HHHH------HHh------cc---CCCCc
Confidence 0000 0100 000 00 23347
Q ss_pred CCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHH
Q 013473 240 LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIK 319 (442)
Q Consensus 240 l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~ 319 (442)
.++++||++||++ ++..+++||++|||+|||| +|+|||++|+++||++|+|+|++||+++|+||+||||++.|++||.
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~l~~~LVL~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~ 158 (282)
T cd06102 81 APVHRRLARAWGL-DPAAADLLRRALVLLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLD 158 (282)
T ss_pred ccHHHHHHHHhcC-CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence 8999999999988 4578899999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCC
Q 013473 320 SVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGK 399 (442)
Q Consensus 320 ~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k 399 (442)
++. +.+++++||++.+++|++||||||++||..|||+++|+++++++.+ +++++++++++++.+.
T Consensus 159 e~~-------~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~~------ 223 (282)
T cd06102 159 EAL-------RAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARAL------ 223 (282)
T ss_pred Hhc-------CCccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH------
Confidence 873 3468899999999999999999999999999999999999999866 9999999999998763
Q ss_pred CCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 400 VKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 400 ~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++++||||||++++++.||||++.++++|.++|++||++|++
T Consensus 224 -~gl~pNvD~a~a~l~~~lG~p~~~~~~lF~~~R~~GwiAH~~ 265 (282)
T cd06102 224 -TGARPNIDFALAALTRALGLPAGAAFALFALGRSAGWIAHAL 265 (282)
T ss_pred -HCCCCChHHHHHHHHHHcCCChhhcchHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999974
No 36
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=9.3e-54 Score=420.51 Aligned_cols=225 Identities=23% Similarity=0.265 Sum_probs=203.2
Q ss_pred ccceecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013473 84 GLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAID 163 (442)
Q Consensus 84 ~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~ 163 (442)
-.+|.||.+|+++ ++||||+|.||+++. +|+|++||||+|++|+++|+
T Consensus 8 ~~~T~i~~~~~~~-l~yrG~~~~dL~~~~---------sf~e~~~lll~G~lP~~~e~---------------------- 55 (263)
T PRK06224 8 WWRTSISDVTPEE-IYVRGYDLEDLIGKL---------SFTDMIFLLLRGRLPTPNEA---------------------- 55 (263)
T ss_pred CCceeeeeecCCe-eEECCccHHHHhhcC---------CHHHHHHHHHcCCCCCHHHH----------------------
Confidence 4678999999887 999999999999886 59999999999999987543
Q ss_pred cCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHH
Q 013473 164 ALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYG 243 (442)
Q Consensus 164 ~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a 243 (442)
T Consensus 56 -------------------------------------------------------------------------------- 55 (263)
T PRK06224 56 -------------------------------------------------------------------------------- 55 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHH
Q 013473 244 GNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVD 323 (442)
Q Consensus 244 ~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~ 323 (442)
++|+.+||++|||| +|+|||++|+++||++|+|+|++||++++ ||+||||+++|++||.++.+
T Consensus 56 ---------------r~f~a~Lv~~adHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~ 118 (263)
T PRK06224 56 ---------------RLLDAVLVALVDHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAA 118 (263)
T ss_pred ---------------HHHHHHHHHHhccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHh
Confidence 24666889999998 99999999999999999999999999999 99999999999999999976
Q ss_pred hcCCCCC-hhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCC
Q 013473 324 ECGENVT-TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKN 402 (442)
Q Consensus 324 ~ig~~~s-~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~ 402 (442)
.++++.+ ++++++||++.+++|++||||||++||..|||+++|+++++++...++++++++++++++.+. +.|+
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~ 193 (263)
T PRK06224 119 AADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEALEAALAAA-----KGKP 193 (263)
T ss_pred hccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh-----cCCC
Confidence 5553223 457899999999999999999999999999999999999999877789999999999988662 3477
Q ss_pred CccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 403 PWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 403 l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++||||||+|++++.||||++.|+++|+++|++||++|++
T Consensus 194 l~~Nvd~~~a~l~~~lG~p~~~~~~lf~~~R~~G~~AH~~ 233 (263)
T PRK06224 194 LPLNVDGAIAAILADLGFPPALARGLFVISRAAGLVAHVW 233 (263)
T ss_pred CCccHHHHHHHHHHHcCCChHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998999999999999999984
No 37
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=8.8e-53 Score=401.79 Aligned_cols=192 Identities=39% Similarity=0.609 Sum_probs=176.1
Q ss_pred CHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHH
Q 013473 241 DYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWI 318 (442)
Q Consensus 241 ~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l 318 (442)
||++||++|+++ |++.++++||.+||+||||| +|+||||+|+++||++|+|+|++||+++++||+||||++.|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 699999999987 88999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCC---CChHHHHHHHHHHhhhhhHH
Q 013473 319 KSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLP---DDPLFQLVSKLFEVVPPILT 395 (442)
Q Consensus 319 ~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~---~~~~~~l~~~l~~~~~~~l~ 395 (442)
.++.+ . ..+++++||++.+++|++||||||||||..|||+++|+++++++.. .++++++++++++++.+..
T Consensus 80 ~e~~~----~-~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~- 153 (213)
T cd06099 80 EEIGT----P-KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVL- 153 (213)
T ss_pred HHhCC----c-ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence 98732 1 2368899999999999999999999999999999999999998753 3599999999999987742
Q ss_pred hcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 396 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 396 ~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.|+++||||||+|++++.+|||++.++++|.++|++||++|++
T Consensus 154 ---~~r~l~~Nvd~~~a~l~~~lG~p~~~~~~lf~~~R~~Gw~AH~~ 197 (213)
T cd06099 154 ---YEKKLYPNVDFYSGVLYKAMGFPTELFTPLFAVARAVGWLAHLI 197 (213)
T ss_pred ---hccCCCCChHHHHHHHHHHcCcCHHhhhHHHHHHHHHHHHHHHH
Confidence 23899999999999999999999998888999999999999974
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=2.5e-47 Score=367.56 Aligned_cols=196 Identities=25% Similarity=0.292 Sum_probs=179.7
Q ss_pred CCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccC-CChHHHHHHHHhhhccccccCchHHHH
Q 013473 239 SLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASAL-SDPYLSFAAALNGLAGPLHGLANQEVL 315 (442)
Q Consensus 239 ~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~-sd~y~avaAgl~aL~GPlHGgAne~v~ 315 (442)
+.+|.+||++|+.+ |++.+.++|+.+|++++|||.+|+|||++|+++||+ +|+|+|++||++++ ||+||||++.++
T Consensus 10 ~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaag~~a~-G~~hgga~e~~~ 88 (227)
T cd06100 10 KISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAAGLLGI-GDRFGGAGEGAA 88 (227)
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CCcccChHHHHH
Confidence 57899999999976 888899999999999999983399999999999999 99999999999999 999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHH
Q 013473 316 LWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILT 395 (442)
Q Consensus 316 ~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~ 395 (442)
+|+.++.+..++ .++++++||++.+++|++||||||++||..|||+++|+++++++...+|+++++.++++++.+.
T Consensus 89 ~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (227)
T cd06100 89 RLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELGPAGPHLDYALAVEKALTAA-- 164 (227)
T ss_pred HHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--
Confidence 999998653221 4579999999999999999999999999999999999999999977789999999999988652
Q ss_pred hcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 396 KLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 396 ~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.|+++||||+|+|++++++|||++.++++|+++|++||++|++
T Consensus 165 ---~~~~l~~Nvd~~~a~~~~~lG~p~~~~~~lf~~~R~~G~~AH~~ 208 (227)
T cd06100 165 ---KGKPLPLNVDGAIAAILLDLGFPPGALRGLFVLGRSPGLIAHAL 208 (227)
T ss_pred ---cCCCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999998999999999999999974
No 39
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.7e-46 Score=401.83 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=154.7
Q ss_pred HHHHHHHHHhccCCCCCCch-hHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHH
Q 013473 259 ELMRLYVTIHSDHEGGNVSA-HTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 337 (442)
Q Consensus 259 ~~l~~~LiL~ADHeg~n~St-~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~ 337 (442)
++||++|||+|||| +|+|| |++|+++||++|+|+|++||++++ ||+||||++.|++||+++.+ ++.++++|
T Consensus 401 ~~ld~~Lvl~ADHG-~~aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~l~ei~~------~~~~~~~~ 472 (608)
T PLN02522 401 KFIEMCIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLTPYEF 472 (608)
T ss_pred HHHHHHHHHhccCC-CCccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHHHHHHhc------cccCHHHH
Confidence 57899999999998 99998 699999999999999999999999 99999999999999998742 23478999
Q ss_pred HHHHHhCCCcccccCCCCC--CCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHH
Q 013473 338 VWKTLNSGKVVPGFGHGVL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLL 415 (442)
Q Consensus 338 v~~~l~~g~~IpGfGH~vy--r~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~ 415 (442)
|++.+++|++|||||||+| +..|||+++|+++++++++..+++++++++|+++.+ +.|+++||||||+|+++
T Consensus 473 V~~~~~~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~------~~k~L~~NVDga~a~i~ 546 (608)
T PLN02522 473 VEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLF 546 (608)
T ss_pred HHHHHhCCCccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhh------ccCCCCcCcHhHHHHHH
Confidence 9999999999999999999 577999999999999998888999999999998644 34899999999999999
Q ss_pred HhcCCCCCCcc--------------hhhhHHhhhhhhcccC
Q 013473 416 NHFGLAEARYD--------------ADFLSGTTANCGLTIL 442 (442)
Q Consensus 416 ~~lGlp~~~~~--------------tv~~~gR~ag~~~~~~ 442 (442)
..||+|.+.|+ ++|.+||++||++|++
T Consensus 547 ~~lg~p~~~ft~~e~~~~~~~~~~~~lF~l~R~~GwiAH~~ 587 (608)
T PLN02522 547 LDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTF 587 (608)
T ss_pred HHcCCCcccCccccccccccccccceEEEeehHHHHHHHHH
Confidence 99999976555 6899999999999974
No 40
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.41 E-value=1.9e-13 Score=141.16 Aligned_cols=172 Identities=22% Similarity=0.200 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHhccCCCCCCc-hhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHH
Q 013473 257 MLELMRLYVTIHSDHEGGNVS-AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLK 335 (442)
Q Consensus 257 ~~~~l~~~LiL~ADHeg~n~S-t~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~ 335 (442)
...++++++.+.+||+ ..+| +|-+-+.+.+++|+++++++||.. .|++.|||-.-+.+.+.+..++ .-.+.
T Consensus 391 a~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~------GL~~m 462 (600)
T KOG1254|consen 391 ARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDK------GLAPM 462 (600)
T ss_pred HHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhc------cCchH
Confidence 4579999999999998 8888 888999999999999999999999 5999998888888777554322 23678
Q ss_pred HHHHHHHhCCCcccccCCCCC--CCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHH
Q 013473 336 DYVWKTLNSGKVVPGFGHGVL--RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGV 413 (442)
Q Consensus 336 ~~v~~~l~~g~~IpGfGH~vy--r~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~ 413 (442)
+++.+.++.+..|||.||++- .+.|-|..++++++++.|+..|+++.+.++|++... |..|+--|||...|+
T Consensus 463 ~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~------k~~nlilnvdg~i~~ 536 (600)
T KOG1254|consen 463 RFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTS------KKPNLILNVDGAIAV 536 (600)
T ss_pred HHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeecc------CCCCEEEeccchhHH
Confidence 999999999999999999997 457889999999999999999999999999998854 678999999999999
Q ss_pred HHHhcC--------------CCCCCcchhhhHHhhhhhhcccC
Q 013473 414 LLNHFG--------------LAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 414 l~~~lG--------------lp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+|-+|= +.-.....+|.+||+.|++-|-|
T Consensus 537 ~fvd~l~~~g~ft~~e~~e~i~ig~lng~fvl~rsig~igh~~ 579 (600)
T KOG1254|consen 537 LFVDLLRNSGMFTKEEADEYINIGALNGLFVLGRSIGFIGHYL 579 (600)
T ss_pred HHHHHHhccCCccHHHhhhheecccccceEEeeeecchhhhhc
Confidence 987652 22234567888999999998854
No 41
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=97.86 E-value=0.00082 Score=65.21 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=53.8
Q ss_pred CCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--C-CHHHH--HHHH-cCCCCCChHHHH
Q 013473 102 GLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--V-PDYVY--KAID-ALPVTAHPMTQF 175 (442)
Q Consensus 102 Gy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--l-p~~v~--~~i~-~lP~~~hPM~~l 175 (442)
||+|.||+++. +|++++|||++|++|+++|++.|...|..... + ...+. ++.. +.| .++-..+
T Consensus 1 G~~~~dL~~~~---------sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~--~~~~~~v 69 (227)
T cd06100 1 GYDLSDLIGKI---------SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGP--EDLQSAV 69 (227)
T ss_pred CCCHHHHHhCC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCC--ccHHHHH
Confidence 89999999876 59999999999999999999999998865542 3 33322 2222 233 6777788
Q ss_pred HHHHHHhh
Q 013473 176 ASGVMALQ 183 (442)
Q Consensus 176 ~~avsal~ 183 (442)
++++++++
T Consensus 70 aag~~a~G 77 (227)
T cd06100 70 AAGLLGIG 77 (227)
T ss_pred HHHHhccC
Confidence 88888884
No 42
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=94.46 E-value=0.011 Score=61.22 Aligned_cols=179 Identities=15% Similarity=-0.000 Sum_probs=109.7
Q ss_pred ceeecccccCccc------------ccccceecceecCCCCceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh----
Q 013473 69 NITVDMVIGGMRG------------MTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT---- 132 (442)
Q Consensus 69 ~~tv~~~~~Glrg------------~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~---- 132 (442)
..+|+...++|+| +.++.-.++-++.++.|+|++.-++||-+..+++.-.++.--+-..|.++.
T Consensus 257 ~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGH 336 (458)
T KOG2617|consen 257 GGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGH 336 (458)
T ss_pred cCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccc
Confidence 5567778889998 788888888888888899999999999887765322211111112233333
Q ss_pred -CCCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHH
Q 013473 133 -GKVPSKEQVDGLSKELRDRATVPDY-VYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSL 210 (442)
Q Consensus 133 -G~lPt~~q~~~~~~~l~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~ 210 (442)
+--+|..+....++.+.++ +|+. ..++.. +-.-++|.++....-..+.+..+...+--...-.-+||..+.+.+
T Consensus 337 avlr~tDPR~~~~~efA~k~--~~~d~l~~l~~--~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVL 412 (458)
T KOG2617|consen 337 AVLRKTDPRYKVQREFALKH--LPDDPLFLLVS--ALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVL 412 (458)
T ss_pred ccccCCCchhhHHHHHHHhc--CCCCcchhhhH--HHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHH
Confidence 1124666665544444444 4332 222222 223456666666655565554443222111334457999999999
Q ss_pred HHHhhhhHHHHHHHHHHhcCCcccCC-CCCCCHHHHHHHHhC
Q 013473 211 NLIARVPVVAAYVYQRIYKDGKIIPK-DDSLDYGGNFSHMLG 251 (442)
Q Consensus 211 ~LiA~lp~i~a~iyr~~~~~~~~~~p-~~~l~~a~nfl~ml~ 251 (442)
-.+++++-+++-+++.+.-+.....| +-..+|..+|..+..
T Consensus 413 FgVsRa~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~~~ 454 (458)
T KOG2617|consen 413 FGVSRALGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNMVR 454 (458)
T ss_pred HHHhhhHHHHHHHHHHHHhCCcccCccccchHHHHHHHHHhh
Confidence 99999999999877766544332233 447788888877764
No 43
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=79.74 E-value=7.1 Score=37.60 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHHHH--HHHHcCCCCCChHHHHHHHHHHhh
Q 013473 123 PEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDYVY--KAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 123 ~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~v~--~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
|-+.+|++++|+.|+++|.+.|..-|....+ ++..+. .+..+ ..++|-.-+.++++++.
T Consensus 2 ~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aS--t~ad~~~av~Agl~al~ 64 (213)
T cd06099 2 YAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGS--TGSDPYSAIAAAIGALK 64 (213)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhc--cCCCHHHHHHHHHHHcC
Confidence 5578999999999999999999988765542 454333 34444 44678888888888883
No 44
>PRK14037 citrate synthase; Provisional
Probab=72.10 E-value=10 Score=39.74 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
+|-+.+|++++|+.|+++|.+.|..-|--+. .++..+....-.--..++|-..+++|+++|.
T Consensus 151 s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 151 SFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 5778899999999999999999998875554 3666655433333345688888888998883
No 45
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=60.63 E-value=16 Score=38.19 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|++++|+.|++++.+.|..-|.-+. .+.. ...+++.+ ..++|...+.+|+++|.
T Consensus 152 s~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~ 215 (373)
T cd06112 152 DYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLS 215 (373)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 5779999999999999999999998875554 2333 34444444 34678888888888874
No 46
>PRK14035 citrate synthase; Provisional
Probab=60.48 E-value=23 Score=37.11 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
-+|-+.+|++++|+.|+++|.+.|..-|.-+.+ +.. ....++.+ ..++|...+.+|+.+|.
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aS--t~ad~~sav~Agi~al~ 214 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVS--SLSDMYSGVVAAVGSLK 214 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 357899999999999999999999988755542 333 33344443 44568888888888874
No 47
>PRK12349 citrate synthase 3; Provisional
Probab=59.50 E-value=31 Score=36.11 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHHHH--HHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDYVY--KAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
+|-+.+|++++|+.|++++.+.|..-|.-.. .++..+. .++.+ ..++|-..+++|+++|.
T Consensus 154 ~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aS--t~ad~~~av~agl~al~ 217 (369)
T PRK12349 154 SYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIAS--TQSDLYGALTGAVASLK 217 (369)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHc--cCccHHHHHHHHHHhcc
Confidence 5678899999999999999999999875554 3555433 34444 34578788888888883
No 48
>PRK14034 citrate synthase; Provisional
Probab=57.81 E-value=27 Score=36.65 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQV 184 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~~ 184 (442)
+|-+.+|++++|+.|+++|.+.|..-|.-+.+ +.. ....++.+ ..++|-..+++|+++|..
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aS--t~~d~ysav~agi~al~G 215 (372)
T PRK14034 151 SLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVA--TLSDVYSGITAAIGALKG 215 (372)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhc--cCCcHHHHHHHHhcccCC
Confidence 57789999999999999999999988755542 333 34444444 445688888888888653
No 49
>PRK14036 citrate synthase; Provisional
Probab=56.64 E-value=31 Score=36.24 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQV 184 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~~ 184 (442)
+|-+.+|++++|+.|++++.+.|..-|--+. .+... ...++.+ ..++|-..+++|+.+|..
T Consensus 153 ~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aS--t~ad~ys~v~agi~aL~G 217 (377)
T PRK14036 153 DYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTAS--TLTDPYAVIASAVGTLAG 217 (377)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHHccC
Confidence 5779999999999999999999998875544 23333 3333333 346788888888887743
No 50
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=48.03 E-value=19 Score=34.68 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=25.2
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcC
Q 013473 127 LWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDAL 165 (442)
Q Consensus 127 ~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~l 165 (442)
++|=|+|.+||.+|+++|.+. .-|+.-.++|+.|
T Consensus 31 v~LDL~G~~PT~eEv~~Fl~d-----~~~~kr~~lVd~L 64 (208)
T PF07583_consen 31 VYLDLTGLPPTPEEVRAFLAD-----PSPDKREKLVDRL 64 (208)
T ss_pred HHHHHhCCCcCHHHHHHHHhC-----CChhHHHHHHHHH
Confidence 588899999999999999875 3355555555543
No 51
>PRK14033 citrate synthase; Provisional
Probab=47.84 E-value=60 Score=34.08 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
+|-+.+|++++|+.|++++.+.|..-|--.. .+.. ....++.+ ..++|-..+++|+++|.
T Consensus 158 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 158 GYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 5778899999999999999999988875443 2333 34445555 34577788888888884
No 52
>PRK12351 methylcitrate synthase; Provisional
Probab=46.49 E-value=68 Score=33.76 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|++++|+.|++++.+.|..-|.-+.+ +.. ....++.+ ..++|-..+++|+++|.
T Consensus 158 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaS--t~ad~~sav~agi~aL~ 221 (378)
T PRK12351 158 SIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 221 (378)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 56788999999999999999999998855542 333 34445555 34578788888888883
No 53
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=46.43 E-value=63 Score=33.73 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|++++|+.|++++.+.|..-|--.. .+.. ....++.+- .++|-..+++++++|.
T Consensus 148 s~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aSt--~ad~~~av~agl~aL~ 211 (362)
T cd06111 148 GIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITST--LSDIYSAITGAIGALK 211 (362)
T ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHcc--CCCHHHHHHHHHhhcc
Confidence 5778899999999999999999998764443 2333 344555553 3577788888888874
No 54
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=44.59 E-value=68 Score=33.58 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
+|-+.+|.+++|+.|++++.+.|..-|.-+.+ +.. ....++.+ ..++|-..+++|+.+|.
T Consensus 146 s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 146 SIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 57788999999999999999999988755432 333 34445554 44678888888888873
No 55
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=42.18 E-value=88 Score=32.70 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
.++.+.+|++++|+.|++++.+.|..-|.-.. .+.. ...+++.+ ..++|-..+++++++|.
T Consensus 147 ~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aS--t~adl~~av~agl~al~ 211 (368)
T TIGR01800 147 DSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAS--TLSDMYSAITAAIGALK 211 (368)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhc--cCCCHHHHHHHHHhhcC
Confidence 46888999999999999999999988875544 2333 34455555 34678888888888874
No 56
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=41.34 E-value=20 Score=32.67 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.8
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..||||+++||.+- ..||++-||
T Consensus 15 f~yRG~~l~~L~~m----------~~~e~~~L~ 37 (143)
T PTZ00096 15 FTYRGVELEKLLAL----------PEEELVELF 37 (143)
T ss_pred eeeecCCHHHHHcC----------CHHHHHHHc
Confidence 37999999999986 378877775
No 57
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=40.98 E-value=82 Score=33.46 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhC-CCCCHHHHHHHHHHHHhh---CCCCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTG-KVPSKEQVDGLSKELRDR---ATVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G-~lPt~~q~~~~~~~l~~~---~~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
+|-+.+|++++| +.|+++|.+.|..-|.-+ ..++. ....++.+- .++|-..+++|+.+|.
T Consensus 175 s~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt--~ad~~~avaagi~al~ 240 (406)
T cd06113 175 STAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 240 (406)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 577899999999 599999999999887533 32333 344555553 4688889999999883
No 58
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=39.98 E-value=97 Score=32.43 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|.+++|+.|++++.+.|..-|.-+.+ +.. ....++.+ ..++|-..+++|+++|.
T Consensus 149 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aS--t~ad~~sav~agi~aL~ 212 (366)
T cd06117 149 SIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 212 (366)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 46688888999999999999999998755542 333 34445555 34577788888888874
No 59
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=37.90 E-value=25 Score=31.72 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.7
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..|||++++||.+- ..||++-||
T Consensus 7 f~yrG~~l~~L~~m----------~~~~~~~l~ 29 (134)
T PRK04038 7 FTYRGYTLEELQEM----------SLEEFAELL 29 (134)
T ss_pred eeecccCHHHHHcC----------CHHHHHHHc
Confidence 47999999999975 368877765
No 60
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=37.12 E-value=1.1e+02 Score=31.85 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
+|-+.++.+++|+.|++++.+.|..-|.-.. .++. .+..++.+-. ++|-..+++|+++|.
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt~--ad~~~av~agl~al~ 211 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVASTL--SDMYSAIAAAIAALK 211 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHccC--CCHHHHHHHHHHHcc
Confidence 4668888899999999999999998875554 2444 3555666643 688889999998884
No 61
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=36.93 E-value=1.4e+02 Score=29.71 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHH
Q 013473 103 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASG 178 (442)
Q Consensus 103 y~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~a 178 (442)
.+.+|.+-.+= .|+-|++-+.++.+++|+.|+++|.+.|..-|.-..+ +.. .+..+..+ ..++|-..++++
T Consensus 37 ~~f~ev~~LL~---~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aS--t~ad~~~av~ag 111 (265)
T cd06101 37 SSFEEVAYLLL---TGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGNASTFTARVVGS--TLSDPYSAIAAA 111 (265)
T ss_pred CCHHHHHHHHH---cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHc--cCCcHHHHHHHH
Confidence 66777665442 2445567788888899999999999999988755432 333 23344444 446788888888
Q ss_pred HHHhh
Q 013473 179 VMALQ 183 (442)
Q Consensus 179 vsal~ 183 (442)
+++|.
T Consensus 112 l~al~ 116 (265)
T cd06101 112 IAALK 116 (265)
T ss_pred HHhCC
Confidence 88874
No 62
>PRK14032 citrate synthase; Provisional
Probab=36.70 E-value=1.1e+02 Score=32.96 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhCC-CCCHHHHHHHHHHHHhh---CCCCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGK-VPSKEQVDGLSKELRDR---ATVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~-lPt~~q~~~~~~~l~~~---~~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|.+++|+ .|+++|.+.|..-|.-+ ..++.. ...++.+ ..++|-..+++|+.+|.
T Consensus 205 s~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aS--t~ad~ysavaagi~aL~ 270 (447)
T PRK14032 205 STAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 270 (447)
T ss_pred CHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 4778888899999 99999999999887544 324443 4445555 44688889999999883
No 63
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=35.77 E-value=1.1e+02 Score=31.82 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--C--CCHHHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--T--VPDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~--lp~~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|.+++|+.|++++.+.|..-|.-+. . .+.....++.+ ..++|-..+++|+.+|.
T Consensus 137 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~al~ 200 (349)
T cd06109 137 SHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAS--TEADLTSAVLGAIGALK 200 (349)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhc--cCCcHHHHHHHHHHhcc
Confidence 5778888899999999999999998875443 1 23334455555 34678888888988883
No 64
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=35.35 E-value=1.2e+02 Score=31.61 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--C--CHHHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--V--PDYVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--l--p~~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+|++++|+.|++++.+.|..-|.-..+ + +..+.+++.+-. ++|-..+.+++++|.
T Consensus 148 ~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~--ad~~~av~agl~al~ 211 (356)
T cd06110 148 SHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVASTL--SDMYSAVTAAIGALK 211 (356)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcC--CCHHHHHHHHHhhcC
Confidence 56688888899999999999999988755442 3 334556777644 577788888888873
No 65
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=33.69 E-value=31 Score=31.16 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=18.0
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..|||++++||.+- ..||++-||
T Consensus 5 f~yrG~~l~~L~~m----------~~~e~~~l~ 27 (135)
T TIGR01025 5 FRYRGYTLEELQDM----------SLEELAKLL 27 (135)
T ss_pred EeecccCHHHHHcC----------CHHHHHHHc
Confidence 37999999999975 367776665
No 66
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=33.07 E-value=87 Score=30.69 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCC
Q 013473 103 LSIPECQKLLPAAKPDGEPLPEGLLWLLLTGK-VPSKEQVDGLSKELRDRATVPDYVYKAIDALP 166 (442)
Q Consensus 103 y~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~-lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP 166 (442)
||-+||.+.+ ..+|.++|==.+|+ +|+.++.++|-++|..+..+.+.+.+-|.-+|
T Consensus 24 ~ty~el~~~~--------g~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSIT--------GLPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHH--------CCCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 5888998775 26899999989988 69999999999999877666555444444344
No 67
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=32.03 E-value=1.7e+02 Score=30.39 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=41.4
Q ss_pred CHHHHHHHHH--hCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLL--TGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl--~G~lPt~~q~~~~~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++.+| +|+-|+++|.+.|..-|.-.. .+... +.+++.+ ..++|-..+.+|++++.
T Consensus 148 ~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aS--t~~~~~~av~agl~al~ 213 (356)
T PF00285_consen 148 SYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAAS--TGADLYSAVAAGLAALS 213 (356)
T ss_dssp SHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT--TT--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhc--cCcchhHHHHhhhhhcc
Confidence 4667777777 899999999999999986554 34443 4445554 55788889999999884
No 68
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=30.05 E-value=80 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 123 PEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 123 ~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
.|-|-||+-.|+..+.+|.-.+-+.|.+.+-+
T Consensus 32 selVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i 63 (81)
T cd04448 32 KELVNWLIRQGKAATRVQAIAIGQALLDAGWI 63 (81)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCE
Confidence 48899999999999999998888888777643
No 69
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=28.86 E-value=3e+02 Score=28.15 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=45.5
Q ss_pred cCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHh-CCCCCHHHHHHHHHHHHhhCCC--CHHHHHHHHc-CC-----CCCCh
Q 013473 101 RGLSIPECQKLLPAAKPDGEPLPEGLLWLLLT-GKVPSKEQVDGLSKELRDRATV--PDYVYKAIDA-LP-----VTAHP 171 (442)
Q Consensus 101 RGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~-G~lPt~~q~~~~~~~l~~~~~l--p~~v~~~i~~-lP-----~~~hP 171 (442)
.|.+..|+..+.+ .++++.+|.. ||.|.....+...-+-.+..++ ..++.++|.. +| ...||
T Consensus 130 ~~~tA~~~ln~~~---------e~~L~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i~tt~~L~~ii~~~~p~~~~~~~~hp 200 (305)
T TIGR00006 130 QKLSAAEILNTYS---------EEDLERILKKYGEEKFSKRIARAIVERRKKKPIQTTKELAELISKAVPGFSKHKSIHP 200 (305)
T ss_pred CCCCHHHHHhhCC---------HHHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCccccccCCCc
Confidence 5889999999873 6777776654 9999887665444332223344 3456777744 45 23489
Q ss_pred HHHHHHHHH
Q 013473 172 MTQFASGVM 180 (442)
Q Consensus 172 M~~l~~avs 180 (442)
.+....|+=
T Consensus 201 atr~FQALR 209 (305)
T TIGR00006 201 ATRVFQAIR 209 (305)
T ss_pred HHHHHHHHH
Confidence 877666543
No 70
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=27.80 E-value=7.6e+02 Score=26.24 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred HHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCC
Q 013473 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 359 (442)
Q Consensus 280 aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~ 359 (442)
|+|+++-.+ |+.++-..|.-|..--+|--+-....+-+.++ +++..-..+.++++++=..|| |-.+-..
T Consensus 231 TarlA~~~g-Dp~la~icg~IAaDE~rHe~fY~~iV~~~le~--------dPd~tm~Aiadmm~~ki~MPa--~~m~dg~ 299 (390)
T PLN00179 231 TARLAKEHG-DAKLAKICGTIAADEKRHETAYTRIVEKLFEI--------DPDGAVLAFADMMRKKITMPA--HLMYDGR 299 (390)
T ss_pred HHHHHHhcC-ChHHHHHHHHHhccHHHHHHHHHHHHHHHHhh--------CccHHHHHHHHHHHhcCCCCc--ccCCCCC
Confidence 455555544 66666555555556677755444444444332 456667777888888777774 7777666
Q ss_pred CCc
Q 013473 360 DPR 362 (442)
Q Consensus 360 DPR 362 (442)
||.
T Consensus 300 d~~ 302 (390)
T PLN00179 300 DDN 302 (390)
T ss_pred cch
Confidence 765
No 71
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=27.76 E-value=3.1e+02 Score=27.90 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=44.6
Q ss_pred cCCCHHHHhhhCCCCCCCCCCCHHHHHHHHH-hCCCCCHHHHHHHHHHHHhhCCC--CHHHHHHHH-cCC---CCCChHH
Q 013473 101 RGLSIPECQKLLPAAKPDGEPLPEGLLWLLL-TGKVPSKEQVDGLSKELRDRATV--PDYVYKAID-ALP---VTAHPMT 173 (442)
Q Consensus 101 RGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl-~G~lPt~~q~~~~~~~l~~~~~l--p~~v~~~i~-~lP---~~~hPM~ 173 (442)
+|.+..|+..+.+ .+++..+|. +|+.|....++.-.-+-.+..++ ..++.+++. .+| ...||.+
T Consensus 128 ~~~sA~~~ln~~~---------~~~L~~i~~~yGee~~a~~iA~~Iv~~R~~~~~~tt~~L~~~i~~~~~~~~~~~hpat 198 (296)
T PRK00050 128 QGLTAAEVVNTYS---------EEELARIFKEYGEERFARRIARAIVEARPKKPITTTGELAEIIKSAVPPRRKGIHPAT 198 (296)
T ss_pred CCCCHHHHHhhCC---------HHHHHHHHHHhcCcchHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCccCCCCCchH
Confidence 5789999999873 677777665 49999876554322221221233 345777775 455 3469988
Q ss_pred HHHHHHH
Q 013473 174 QFASGVM 180 (442)
Q Consensus 174 ~l~~avs 180 (442)
....|+=
T Consensus 199 r~FQAlR 205 (296)
T PRK00050 199 RTFQALR 205 (296)
T ss_pred HHHHHHH
Confidence 7766654
No 72
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=27.50 E-value=80 Score=26.62 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHhh-CCCCHHHHHHHHc
Q 013473 133 GKVPSKEQVDGLSKELRDR-ATVPDYVYKAIDA 164 (442)
Q Consensus 133 G~lPt~~q~~~~~~~l~~~-~~lp~~v~~~i~~ 164 (442)
...-|.+|++++..+|..| +.+|++|.+++.-
T Consensus 27 ~~~~~~~el~~l~~El~DRFG~~P~ev~~L~~~ 59 (101)
T PF03461_consen 27 ASAESEEELEDLREELIDRFGPLPEEVENLLEL 59 (101)
T ss_dssp HC--SHHHHHHHHHHHHHHH-S--HHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 4557899999999999877 6899999888763
No 73
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=24.27 E-value=2.8e+02 Score=24.10 Aligned_cols=13 Identities=15% Similarity=0.007 Sum_probs=7.5
Q ss_pred ecCCCHHHHhhhC
Q 013473 100 FRGLSIPECQKLL 112 (442)
Q Consensus 100 yRGy~I~eLa~~~ 112 (442)
-||++.+||++.+
T Consensus 16 ~~Glsq~eLA~~~ 28 (120)
T PRK13890 16 ERHMTKKELSERS 28 (120)
T ss_pred HcCCCHHHHHHHH
Confidence 4556666666554
No 74
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=21.91 E-value=60 Score=31.08 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=39.2
Q ss_pred hhhhhcccccccccchhhh---h-------hhccccchhHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcc
Q 013473 11 SRLRSRVGQQSNLSNSVRW---L-------QMQSSADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMR 80 (442)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glr 80 (442)
|.+.++.|....-|++..+ | ++.+.++.+|++.+++. +++++++++...-.+|++|.+.
T Consensus 57 S~LIgQ~Ft~~~YF~~RPSa~~y~~~~SggSNl~psnp~l~~~v~~r-------~~~~~~~~~~~~~~~vP~DlVT---- 125 (193)
T PRK13997 57 SKLIGQNFTDPRYFHGRVSSIEYKAEASGSNNYAPSNPDLEKRVEKS-------IEEWKKQNPSVPVTEVPIDLVT---- 125 (193)
T ss_pred eeeecCCCCCCCCccCCCCCCCCCcccccccCCCCCCHHHHHHHHHH-------HHHHHHhCCCCCCCCCCHHHHh----
Confidence 4555666766666666322 1 22344677888876643 4566666543333577777643
Q ss_pred cccccceecceecCC
Q 013473 81 GMTGLLWETSLLDPD 95 (442)
Q Consensus 81 g~~~~~t~iS~iD~~ 95 (442)
++-|-+||.
T Consensus 126 ------aSgSGLDPh 134 (193)
T PRK13997 126 ------NSGSGLDPD 134 (193)
T ss_pred ------ccccCCCCC
Confidence 355667775
Done!