Query 013473
Match_columns 442
No_of_seqs 267 out of 1374
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 100.0 5E-113 2E-117 889.0 40.6 404 39-442 3-408 (435)
2 3hwk_A Methylcitrate synthase; 100.0 8.3E-97 3E-101 760.7 34.0 354 54-442 25-387 (414)
3 3msu_A Citrate synthase; helix 100.0 8.8E-96 3E-100 755.6 32.1 343 67-442 46-402 (427)
4 2h12_A Citrate synthase; acido 100.0 1.9E-95 7E-100 756.5 32.5 353 55-442 38-405 (436)
5 2ibp_A Citrate synthase; disul 100.0 1.2E-95 4E-100 753.3 30.4 358 61-442 9-380 (409)
6 3l96_A Citrate synthase; quate 100.0 1E-95 4E-100 755.5 21.0 346 67-442 37-396 (426)
7 3tqg_A 2-methylcitrate synthas 100.0 4E-94 1.4E-98 734.2 30.7 335 69-442 4-345 (375)
8 2p2w_A Citrate synthase; trans 100.0 5.5E-94 1.9E-98 732.6 31.6 333 74-442 1-334 (367)
9 3o8j_A 2-methylcitrate synthas 100.0 6.1E-94 2.1E-98 738.0 30.5 347 63-442 18-374 (404)
10 2c6x_A Citrate synthase 1; tri 100.0 2.5E-93 8.6E-98 726.4 34.2 337 75-442 1-340 (363)
11 1aj8_A Citrate synthase; hyper 100.0 1.3E-92 4.3E-97 723.5 33.0 336 76-442 2-341 (371)
12 1iom_A Citrate synthase; open 100.0 2.7E-92 9.2E-97 722.4 35.1 337 76-442 4-346 (377)
13 1a59_A Citrate synthase; cold- 100.0 1.2E-92 4.1E-97 725.9 31.7 341 75-442 5-354 (378)
14 1o7x_A Citrate synthase; lyase 100.0 1.5E-92 5.2E-97 724.2 32.2 335 76-442 5-347 (377)
15 1vgm_A 378AA long hypothetical 100.0 1.8E-92 6.2E-97 723.9 31.8 334 77-442 7-348 (378)
16 1vgp_A 373AA long hypothetical 100.0 1.8E-92 6.2E-97 723.1 31.0 334 75-442 3-344 (373)
17 2ifc_A Citrate synthase; oxalo 100.0 2E-92 6.8E-97 725.1 31.3 337 75-442 7-354 (385)
18 3tqg_A 2-methylcitrate synthas 45.7 57 0.0019 32.8 8.2 61 121-183 153-217 (375)
19 4ay7_A Methylcobalamin\: coenz 40.7 26 0.00088 34.3 4.7 44 330-373 302-346 (348)
20 3u5c_P 40S ribosomal protein S 39.4 12 0.0004 32.8 1.7 23 98-130 15-37 (142)
21 3hwk_A Methylcitrate synthase; 38.8 58 0.002 33.2 7.1 60 122-183 196-259 (414)
22 3j20_T 30S ribosomal protein S 38.6 11 0.00038 32.6 1.4 23 98-130 6-28 (132)
23 2ifc_A Citrate synthase; oxalo 36.9 1E+02 0.0036 30.9 8.6 60 122-183 156-219 (385)
24 1a59_A Citrate synthase; cold- 36.6 1E+02 0.0036 30.8 8.5 59 122-182 154-216 (378)
25 1aj8_A Citrate synthase; hyper 36.5 1.1E+02 0.0036 30.7 8.5 60 122-183 151-214 (371)
26 1iom_A Citrate synthase; open 36.1 1.1E+02 0.0037 30.7 8.5 60 122-183 152-215 (377)
27 3o8j_A 2-methylcitrate synthas 35.5 1.1E+02 0.0038 31.0 8.6 61 121-183 182-246 (404)
28 1vgp_A 373AA long hypothetical 34.5 1.2E+02 0.004 30.4 8.5 60 122-183 148-211 (373)
29 2ibp_A Citrate synthase; disul 34.5 1.2E+02 0.004 30.8 8.6 60 122-183 182-245 (409)
30 1vgm_A 378AA long hypothetical 33.9 1.3E+02 0.0043 30.2 8.6 60 122-183 152-215 (378)
31 2xzm_S RPS15E; ribosome, trans 33.9 14 0.00047 32.4 1.3 32 98-130 11-42 (144)
32 2c6x_A Citrate synthase 1; tri 30.2 74 0.0025 31.8 6.2 60 122-183 145-208 (363)
33 1wg8_A Predicted S-adenosylmet 30.0 1.1E+02 0.0039 29.5 7.2 69 102-179 127-201 (285)
34 3iz6_R 40S ribosomal protein S 26.2 14 0.00048 32.7 0.0 23 98-130 24-46 (154)
35 2eja_A URO-D, UPD, uroporphyri 25.8 65 0.0022 31.1 4.8 44 330-373 287-335 (338)
36 1r3s_A URO-D, uroporphyrinogen 25.0 53 0.0018 32.3 4.0 44 330-373 313-360 (367)
37 2qsr_A Transcription-repair co 24.6 73 0.0025 28.3 4.5 31 133-163 38-69 (173)
38 1o7x_A Citrate synthase; lyase 21.3 2.4E+02 0.0081 28.2 7.9 60 122-183 151-214 (377)
39 4exq_A UPD, URO-D, uroporphyri 20.9 71 0.0024 31.6 4.0 44 330-373 310-358 (368)
40 3cyv_A URO-D, UPD, uroporphyri 20.9 99 0.0034 30.0 5.0 44 330-373 300-348 (354)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=4.6e-113 Score=888.97 Aligned_cols=404 Identities=58% Similarity=1.042 Sum_probs=385.6
Q ss_pred hHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCceecCCCHHHHhhhCCCCCCC
Q 013473 39 DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPD 118 (442)
Q Consensus 39 ~lk~~~~~~ip~~~~~~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi~yRGy~I~eLa~~~p~~~~~ 118 (442)
+||++++++||.+++++|+||++||++++|++|+||+++||+|+++++|+||+||+++||+||||+|+||++++|+++++
T Consensus 3 ~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~~ 82 (435)
T 1csh_A 3 NLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGGG 82 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCcccccC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCC
Q 013473 119 GEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHK 198 (442)
Q Consensus 119 ~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~ 198 (442)
++++||||+||||+|+|||++|+++|+++|..++.+|+.+.++|+++|+++|||++|+++|++|+++++|+++|+++.++
T Consensus 83 ~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~~ 162 (435)
T 1csh_A 83 EEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINR 162 (435)
T ss_dssp CSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCCG
T ss_pred CcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999899877766
Q ss_pred CCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCC-cccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCc
Q 013473 199 SKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277 (442)
Q Consensus 199 ~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~-~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~S 277 (442)
.++|+++++++++|||++|+|+|++||++++++ .+++|++++||++||++||+++++.++++||++|||||||||+|+|
T Consensus 163 ~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~S 242 (435)
T 1csh_A 163 TKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVS 242 (435)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCchH
Confidence 678999999999999999999999999998765 5789999999999999999999999999999999999999779999
Q ss_pred hhHHHHhhccCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 013473 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR 357 (442)
Q Consensus 278 t~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr 357 (442)
|||+|+++||++|+|+|++|||++|+||+||||||+|++||.++.++||++++++++++||++.+++|++||||||||||
T Consensus 243 TftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVyk 322 (435)
T 1csh_A 243 AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLR 322 (435)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCccccC
Confidence 99999999999999999999999999999999999999999999888997767999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCC-CCCcchhhhHHhhhh
Q 013473 358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLA-EARYDADFLSGTTAN 436 (442)
Q Consensus 358 ~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp-~~~~~tv~~~gR~ag 436 (442)
+.|||+++|+++++++.+++++++++.+||+++++++.++++.|++|||||||+|+++++|||| .+.|+++|+++|++|
T Consensus 323 ~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~G 402 (435)
T 1csh_A 323 KTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALG 402 (435)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhHH
Confidence 9999999999999999888999999999999999988899999999999999999999999995 544444788999999
Q ss_pred hhcccC
Q 013473 437 CGLTIL 442 (442)
Q Consensus 437 ~~~~~~ 442 (442)
|++|++
T Consensus 403 w~AH~~ 408 (435)
T 1csh_A 403 VLAQLI 408 (435)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999973
No 2
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.3e-97 Score=760.67 Aligned_cols=354 Identities=20% Similarity=0.294 Sum_probs=310.9
Q ss_pred HHHHHHHhhCCCcccceeecc---cccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 013473 54 RLKKVKSELGKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (442)
Q Consensus 54 ~~k~l~~~~g~~~~g~~tv~~---~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~L 129 (442)
.+|..|++||.++++++|+|+ +.+||+|+++++|+||+||+++| |+||||+|+||++++ +||||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~d~~~~~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~~~---------~fEevayL 95 (414)
T 3hwk_A 25 PLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARC---------SFEQVAFL 95 (414)
T ss_dssp -----------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHH
T ss_pred eHHHHHHhhCCcccCCccccCCCCCCCCCCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHH
Confidence 467889999999999999999 89999999999999999999999 799999999999986 59999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHH
Q 013473 130 LLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDS 209 (442)
Q Consensus 130 Ll~G~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a 209 (442)
||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++.. .+ |+.+++++
T Consensus 96 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~~~~---------~~-~~~~~~~a 165 (414)
T 3hwk_A 96 LWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDE---------DD-AAANRAKA 165 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTCTTT---------TC-GGGHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCCcc---------cC-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764321 11 89999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhcc
Q 013473 210 LNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASA 287 (442)
Q Consensus 210 ~~LiA~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt 287 (442)
++|||++|+|+|++||++.+ ..+++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||
T Consensus 166 ~rLiAk~pti~a~~yr~~~g-~~~~~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~NaST~taRvvaSt 243 (414)
T 3hwk_A 166 MRMMAVLPTIVAIDMRRRRG-LPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHG-FNASTFAARVVTST 243 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhc
Confidence 99999999999999998753 3588899999999999999976 78899999999999999999 89999999999999
Q ss_pred CCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHH
Q 013473 288 LSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 367 (442)
Q Consensus 288 ~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~ 367 (442)
++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+
T Consensus 244 ~ad~ysavaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~L~ 316 (414)
T 3hwk_A 244 QSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEI----G---DPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMK 316 (414)
T ss_dssp TCCHHHHHHHHHHHHTSTTTTHHHHHHHHHHHHH----C---SGGGHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCccCChHHHHHHHHHHh----C---CchHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHH
Confidence 9999999999999999999999999999999876 5 56899999999999999999999999999999999999
Q ss_pred HHHHhh---CCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 368 EFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 368 ~~a~~~---~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++++++ .+++++++++.++|+++.+ .|+++||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 317 ~~a~~l~~~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~~~~t~lFaisR~~Gw~AH~~ 387 (414)
T 3hwk_A 317 RALERVGTVRDGQRWLDIYQVLAAEMAS-------ATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIM 387 (414)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HHCCCBCTHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-------hcCCCCchHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 999864 5678999999999999965 2799999999999999999999987777788999999999974
No 3
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=8.8e-96 Score=755.62 Aligned_cols=343 Identities=28% Similarity=0.415 Sum_probs=310.3
Q ss_pred ccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q 013473 67 LGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145 (442)
Q Consensus 67 ~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~ 145 (442)
.|.+|+|. |+.|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+
T Consensus 46 ~G~~t~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G~LPt~~el~~f~ 113 (427)
T 3msu_A 46 HGIFTYDP---GFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQKS---------NYRTLCYALIYGELPTDEQVKSFR 113 (427)
T ss_dssp GTEEEECT---TCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CCCEeeCC---CcCCceEEEEEeeEEeCCCCEEEECCeEHHHHhccC---------CHHHHHHHHHcCcCCCHHHHHHHH
Confidence 48999987 999999999999999999995 99999999999985 699999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHH
Q 013473 146 KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ 225 (442)
Q Consensus 146 ~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr 225 (442)
++|.+++.||+++.++|++||+++|||++|+++|++|++++ .+ ...|+++++++++||||+|+|+|++||
T Consensus 114 ~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~~~-------~~---~~~~~~~~~~a~rLiAk~pti~a~~yr 183 (427)
T 3msu_A 114 QEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH-------IH---NGQKESQDEVAKNIVAKIATIAAMAYR 183 (427)
T ss_dssp HHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHH-------HH---TTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhc-------cC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998642 12 234899999999999999999999999
Q ss_pred HHhcCCcccCCCCCCCHHHHHHHHhCC------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHH
Q 013473 226 RIYKDGKIIPKDDSLDYGGNFSHMLGF------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAAL 299 (442)
Q Consensus 226 ~~~~~~~~~~p~~~l~~a~nfl~ml~~------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl 299 (442)
++.++ .+++|++++||++||++||++ ++|.++++||++|||||||| +|+||||+|++|||++|+|+|++|||
T Consensus 184 ~~~G~-~~~~p~~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysavaAgi 261 (427)
T 3msu_A 184 HNHGK-KFLEPKMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGI 261 (427)
T ss_dssp HHTTC-CCCCCCTTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHcCC-CCCCCCCccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCC-CChhHHHHHHHHccCCCHHHHHHHHH
Confidence 87643 478899999999999999965 47889999999999999999 99999999999999999999999999
Q ss_pred hhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCCcHHHHHHHHHhh----
Q 013473 300 NGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALKH---- 373 (442)
Q Consensus 300 ~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~--~IpGfGH~vyr~~DPRa~~l~~~a~~~---- 373 (442)
++|+||+||||||+|++||+++ + +++++++||++.+++|+ +||||||||||+.|||+++|+++|+++
T Consensus 262 ~aL~GPlHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~~i~GFGHrVYk~~DPRa~~Lk~~a~~l~~~~ 334 (427)
T 3msu_A 262 TALWGPAHGGANEAVLKMLSEI----G---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKL 334 (427)
T ss_dssp HHHTSHHHHCHHHHHHHHHHHH----C---STTHHHHHHHHHHTC-----CCSBCCSSSSSCCHHHHHHHHHTHHHHHHG
T ss_pred HHccCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 9999999999999999999876 5 46799999999999999 999999999999999999999999875
Q ss_pred -CCCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 374 -LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 374 -~~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
.+++++++++.++|+++.+ ++|++.|++|||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 335 g~~~~~~~~la~~le~~a~~--d~~~~~k~l~pNVDfysg~i~~~lGip~~~ft~lFaisR~~Gw~AH~~ 402 (427)
T 3msu_A 335 GHSDNPLLTVAKKLEEIALQ--DEFFIERKLFSNVDFYSGIILKAMGIPEDMFTAIFALARTSGWISQWI 402 (427)
T ss_dssp GGCSSHHHHHHHHHHHHHC--------CCCCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhh--cccccccCCCCChHHHHHHHHHHcCCCccccceehhHHhHHHHHHHHH
Confidence 2378999999999999987 788999999999999999999999999877777777999999999963
No 4
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=1.9e-95 Score=756.50 Aligned_cols=353 Identities=26% Similarity=0.412 Sum_probs=320.0
Q ss_pred HHHHHHhhCCCcccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 013473 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (442)
Q Consensus 55 ~k~l~~~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G 133 (442)
+++|+++. |.+|+| +||+|+++++|+||+||+++|+ +||||+|+||++++ +||||+||||+|
T Consensus 38 ~~~l~~~~-----g~~t~~---~Gl~g~~~~~S~Is~idg~~G~L~YRGy~I~dLa~~~---------~feEvayLLl~G 100 (436)
T 2h12_A 38 IRKLPAQL-----GVFTFD---PGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAENA---------SYEEVIYLLLNG 100 (436)
T ss_dssp CTTHHHHH-----SCEEEC---TTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHS
T ss_pred ehhhcccC-----CcEeeC---CccCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcC
Confidence 55676664 588998 6999999999999999999995 99999999999996 599999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHH
Q 013473 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 213 (442)
Q Consensus 134 ~lPt~~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~Li 213 (442)
+|||++|+++|+++|..++.+|+.+.++++.+|+++|||++|+++|++|++.+ ++.... ..++..++++++||
T Consensus 101 ~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~~------~~~~~~-~~~~~~~~~a~rLi 173 (436)
T 2h12_A 101 ELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFY------PDANDI-AIPANRDLAAMRLI 173 (436)
T ss_dssp SCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGC------C---------CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC------cccccC-CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999752 222222 23578899999999
Q ss_pred hhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhc
Q 013473 214 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 286 (442)
Q Consensus 214 A~lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaS 286 (442)
|++|+|+|++||+..++ .+++|+++++|++||++|+.+ ++|..+++||++|||||||| +|+||||+||+||
T Consensus 174 Ak~ptiaa~~yr~~~g~-~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe-~NaSTftaRvvaS 251 (436)
T 2h12_A 174 AKIPTIAAWAYKYTQGE-AFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHE-QNASTSTVRLAGS 251 (436)
T ss_dssp HHHHHHHHHHHHHHHTC-CCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCC-CchHHHHHHHHHh
Confidence 99999999999987654 478899999999999999964 68899999999999999998 8999999999999
Q ss_pred cCCChHHHHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCCcHH
Q 013473 287 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYT 364 (442)
Q Consensus 287 t~sd~y~avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g--~~IpGfGH~vyr~~DPRa~ 364 (442)
|++|+|+|++|||++|+||+||||||+|++||++| | +++++++||++.++++ ++||||||||||+.|||++
T Consensus 252 t~ad~ysaiaAgi~aL~GPlHGGAne~v~~ml~ei----~---~~~~v~~~i~~~l~~~~g~~imGFGHrVYk~~DPRa~ 324 (436)
T 2h12_A 252 TGANPFACIAAGIAALWGPAHGGANEAVLKMLARI----G---KKENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAK 324 (436)
T ss_dssp TTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHH----C---SGGGHHHHHHHHHCTTSCCCCTTBCCSSCSSCCHHHH
T ss_pred cCccHHHHHHHHHHhcCCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhccCCCcccCCCccccCCCCCcHH
Confidence 99999999999999999999999999999999886 5 5789999999999955 9999999999999999999
Q ss_pred HHHHHHHhh---CC--CChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhc
Q 013473 365 CQREFALKH---LP--DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGL 439 (442)
Q Consensus 365 ~l~~~a~~~---~~--~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~ 439 (442)
+|+++|+++ .+ ++++++++.++|+++.+ +++|+.|++|||||||||++|++||||.+.|+++|+++|++||++
T Consensus 325 iLk~~a~~l~~~~g~~~~~~~~la~~lE~~al~--~~~~~~k~l~pNVDfysg~i~~~lGiP~~~ft~lFaisR~~GW~A 402 (436)
T 2h12_A 325 IMQQTCHEVLTELGIKDDPLLDLAVELEKIALS--DDYFVQRKLYPNVDFYSGIILKAMGIPTSMFTVLFAVARTTGWVS 402 (436)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--SHHHHHTTCCBCTHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh--hhhccccCCCcChHHHHHHHHHHhCCChhhhhhhhhhhccccHHH
Confidence 999999987 24 68999999999999854 557778999999999999999999999988888888999999999
Q ss_pred ccC
Q 013473 440 TIL 442 (442)
Q Consensus 440 ~~~ 442 (442)
|++
T Consensus 403 H~~ 405 (436)
T 2h12_A 403 QWK 405 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 973
No 5
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=100.00 E-value=1.2e-95 Score=753.27 Aligned_cols=358 Identities=28% Similarity=0.389 Sum_probs=335.3
Q ss_pred hhCCCcccceeecccccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHH
Q 013473 61 ELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKE 139 (442)
Q Consensus 61 ~~g~~~~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ 139 (442)
+||.++++.+|++ +.+||+|+++++|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||++
T Consensus 9 ~~~~~~~~~~~~~-~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~ 78 (409)
T 2ibp_A 9 KTTGKILQSPCGP-IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARLS---------TYEEVSYLILYGRLPTKR 78 (409)
T ss_dssp EESSCEECCTTSC-EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHH
T ss_pred CCCCcccCcCCCC-CCCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHH
Confidence 7999999999998 78999999999999999999999 699999999999996 699999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhh----HHhhhccCCCCCCcchHHHHHHHHhh
Q 013473 140 QVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ----EAYEKGIHKSKYWEPTYEDSLNLIAR 215 (442)
Q Consensus 140 q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~----~~y~~~~~~~~~~e~~~e~a~~LiA~ 215 (442)
|+++|+++|..++.+|+.+.++++.+|++ |||++|+++|++|+++++++ ++|..|.+|.++|+..++++++|||+
T Consensus 79 el~~f~~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~a~~Lia~ 157 (409)
T 2ibp_A 79 ELEDYINRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAK 157 (409)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999987765 56788888887899999999999999
Q ss_pred hhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHH
Q 013473 216 VPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYL 293 (442)
Q Consensus 216 lp~i~a~iyr~~~~~~~~~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~ 293 (442)
+|+|+|++||+.+++ ++++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+
T Consensus 158 ~p~i~a~~y~~~~g~-~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg-~naST~aaRv~aSt~ad~~s 235 (409)
T 2ibp_A 158 MPTIVAYHYRFSRGL-EVVRPRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHE-VPASTFAAHVVASTLSDLYS 235 (409)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHcCC-CcccCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHhhcCCcHHH
Confidence 999999999998754 578899999999999999976 78999999999999999998 89999999999999999999
Q ss_pred HHHHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC-CCcccccCCCCCCCCCCcHHHHHHHHHh
Q 013473 294 SFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNS-GKVVPGFGHGVLRKTDPRYTCQREFALK 372 (442)
Q Consensus 294 avaAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~-g~~IpGfGH~vyr~~DPRa~~l~~~a~~ 372 (442)
|++|||++|+||+||||||+|++||.++ + +++++++||++.+++ |++||||||||||+.|||+++|++++++
T Consensus 236 avaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~ 308 (409)
T 2ibp_A 236 SVAAAIAALKGPLHGGANEMAVRNYLEI----G---TPAKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRD 308 (409)
T ss_dssp HHHHHHHHHTSTTTSCHHHHHHHHHHHH----C---CGGGHHHHHHHHTSTTCCCCTTBCCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCccCCchHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcCcCCCccccCCCCCchHHHHHHHHH
Confidence 9999999999999999999999999876 5 568999999999999 9999999999999999999999999998
Q ss_pred hC---CCC-hHHHHHHHHHHhh--hhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 373 HL---PDD-PLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 373 ~~---~~~-~~~~l~~~l~~~~--~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+. +.+ ++++++.+||+++ ++++ +.||++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 309 l~~~~~~~g~~~~~a~~le~~~l~~~~~----~~k~l~pNVDf~sg~i~~~lGip~~~~t~lFaisR~~Gw~AH~~ 380 (409)
T 2ibp_A 309 YVAKFGDPQNLFAIASAIEQEVLSHPYF----QQRKLYPNVDFWSGIAFYYMGIPYEYFTPIFAMSRVVGWVAHVL 380 (409)
T ss_dssp HHHHHCCTTCHHHHHHHHHHHHHHCHHH----HHTTCCBCGGGTHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHccchhh----hhcCCCCChHHHHHHHHHHhCCCHHhhhhHHHHhccccHHHHHH
Confidence 73 455 9999999999999 6654 34899999999999999999999988888889999999999973
No 6
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=1e-95 Score=755.47 Aligned_cols=346 Identities=25% Similarity=0.387 Sum_probs=317.1
Q ss_pred ccceeecccccCcccccccceecceecCCCCc-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q 013473 67 LGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145 (442)
Q Consensus 67 ~g~~tv~~~~~Glrg~~~~~t~iS~iD~~~Gi-~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~ 145 (442)
.|.+|+|. |+.|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+
T Consensus 37 ~g~~~~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G~LPt~~el~~f~ 104 (426)
T 3l96_A 37 KGVFTFDP---GFTSTTSCESKITFIDGDEGILLHRGFPIDQLATDS---------NYLEVCYILLNGEKPTQEQYDEFK 104 (426)
T ss_dssp HTCCEECT---TSSSEEEEEESSEEEEGGGTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CCcEEeCC---CCCCceEEeEEeEEEECCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHH
Confidence 47999987 999999999999999999995 99999999999986 699999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHH
Q 013473 146 KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ 225 (442)
Q Consensus 146 ~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr 225 (442)
++|.+++.||+++.++|++||+++|||++|+++|++|++. |++..+ ...++++++++++||||+|+|+|++||
T Consensus 105 ~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~~------~~~~~~-~~~~~~~~~~a~rLiAk~pti~a~~yr 177 (426)
T 3l96_A 105 TTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAF------YHDSLD-VNNPRHREIAAFRLLSKMPTMAAMCYK 177 (426)
T ss_dssp HHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGGT------CGGGCC-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh------Cccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864 333321 234678899999999999999999999
Q ss_pred HHhcCCcccCCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHH
Q 013473 226 RIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAA 298 (442)
Q Consensus 226 ~~~~~~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAg 298 (442)
++.++ .+++|++++||++||++||++ ++|.++++||++|||||||| +|+||||+|+++||++|+|+|++||
T Consensus 178 ~~~G~-~~~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysaiaAg 255 (426)
T 3l96_A 178 YSIGQ-PFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHE-QNASTSTVRTAGSSGANPFACIAAG 255 (426)
T ss_dssp HHHTC-CCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCS-SCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHCCC-CCCCCCCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHhccCCcHHHHHHHH
Confidence 88654 478899999999999999964 47889999999999999999 8999999999999999999999999
Q ss_pred HhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCCcHHHHHHHHHhhC--
Q 013473 299 LNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALKHL-- 374 (442)
Q Consensus 299 l~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~--~IpGfGH~vyr~~DPRa~~l~~~a~~~~-- 374 (442)
|++|+||+||||||+|++||+++ + +++++++||++.+++|+ +||||||||||+.|||+++|+++|++++
T Consensus 256 i~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~~~I~GfGHrVyk~~DPRa~~l~~~a~~l~~~ 328 (426)
T 3l96_A 256 IASLWGPAHGGANEAALKMLEEI----G---KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKE 328 (426)
T ss_dssp HHHHHTTTTSSHHHHHHHHHHHC----C---SSSSTTTTSGGGCCSSCCTGGGTBCCSSCSSCCTTHHHHHHHHHHHHHH
T ss_pred HHhccCCccCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5 45789999999999999 9999999999999999999999998753
Q ss_pred -C-CChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 375 -P-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 375 -~-~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+ ++++++++.++|+++.+ +++++.|+++||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 329 ~g~~~~~~~~a~~le~~~~~--~~~~~~k~l~pNVDfysg~i~~~lGip~~~ft~lFaisR~~Gw~AH~~ 396 (426)
T 3l96_A 329 LGTKDDLLEVAMELENIALN--DPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWS 396 (426)
T ss_dssp TCSCCSSTTHHHHHHHHHHH--CHHHHHHTCCBCHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhh--cccccccCCCCchHHHHHHHHHHcCCCcccchhhhHHHHHHHHHHHHH
Confidence 2 68999999999999976 567778999999999999999999999877777777999999999973
No 7
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=100.00 E-value=4e-94 Score=734.17 Aligned_cols=335 Identities=24% Similarity=0.365 Sum_probs=300.6
Q ss_pred ceeecccccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHH
Q 013473 69 NITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKE 147 (442)
Q Consensus 69 ~~tv~~~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~ 147 (442)
-.|+| +||+|+.+++|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|+++
T Consensus 4 ~~~~~---~Gl~gv~~~~t~Is~idg~~g~L~YRGy~I~dLa~~~---------~feev~yLLl~G~lPt~~el~~f~~~ 71 (375)
T 3tqg_A 4 MTKTA---KGLRGQSAGETSIATVGKEGHGLTYRGYRIEDLAANA---------TFEEVAYLLLKNKLPTKSELDAYTKK 71 (375)
T ss_dssp ---------------CCEESSEEECTTSCCEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CcccC---CccCCCeEeeeeceEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCcCHHHHHHHHHH
Confidence 34554 599999999999999999887 699999999999986 69999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHH
Q 013473 148 LRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRI 227 (442)
Q Consensus 148 l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~ 227 (442)
|.+++.||+++.++|++||+++|||++|+++|++|+++++.. .|+..++++++|||++|+|+|++||++
T Consensus 72 l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~~~~~~-----------~~~~~~~~a~~LiAk~p~i~a~~yr~~ 140 (375)
T 3tqg_A 72 LVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPEN-----------GFENEQNIADRLVAIFPAIQCYWYHYS 140 (375)
T ss_dssp HHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC-----------SGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998754321 278999999999999999999999987
Q ss_pred hcCCcccCCCCC-CCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhcc
Q 013473 228 YKDGKIIPKDDS-LDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAG 304 (442)
Q Consensus 228 ~~~~~~~~p~~~-l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~G 304 (442)
.+ +.++.|+++ +||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+|
T Consensus 141 ~g-~~~i~p~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe-~n~St~tarvvaSt~ad~ysavaagi~aL~G 218 (375)
T 3tqg_A 141 HH-GKRIDTELDDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHE-FNASTFAARVCSATLSDIYSAVTAAIATLRG 218 (375)
T ss_dssp HH-CCCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTS
T ss_pred cC-CCCcCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHccCCCHHHHHHHHHHhccC
Confidence 65 457888886 9999999999976 78899999999999999999 8999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHH
Q 013473 305 PLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQ 381 (442)
Q Consensus 305 PlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~ 381 (442)
|+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++
T Consensus 219 plHGGAne~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~l~~~~~~~~~~~ 291 (375)
T 3tqg_A 219 PLHGGANEAAMDLIMLY----K---TPSEAIAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYLFD 291 (375)
T ss_dssp HHHHCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHTTTSTTTHHHH
T ss_pred cccCCHHHHHHHHHHHh----c---ChhHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999764 5 578999999999999999999999999999999999999999873 5689999
Q ss_pred HHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 382 LVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 382 l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.++|+++.+ .|+++||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 292 ~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~~~~t~lFa~sR~~Gw~AH~~ 345 (375)
T 3tqg_A 292 ISDAIENTMQD-------EKKLFPNLDFYSATAYHFLNIPTKLFTPIFVMSRVTGWCAHIF 345 (375)
T ss_dssp HHHHHHHHHHH-------HHCCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------hcCCCCChHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999865 3799999999999999999999987777888999999999973
No 8
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=5.5e-94 Score=732.57 Aligned_cols=333 Identities=25% Similarity=0.394 Sum_probs=307.3
Q ss_pred ccccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q 013473 74 MVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (442)
Q Consensus 74 ~~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~ 152 (442)
++.+||+|+++++|+||+||+++| |+||||+|+||++++ +||||+||||+|++||++|+++|+++|..++
T Consensus 1 ~~~~Gl~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LLl~G~lPt~~el~~f~~~l~~~~ 71 (367)
T 2p2w_A 1 MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKS---------TFEETAYFLWYGKLPTKSELEEFKRKMADYR 71 (367)
T ss_dssp CCCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCcCCCCeeeeeeCeEEECCCCEEEECCeeHHHHHcCC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Confidence 356899999999999999999988 799999999999997 6999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 013473 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (442)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~ 232 (442)
.+|+.+.++|+.+|+++|||++|+++|++|++. |++ |+..++++++|||++|+|+|++||++.++ +
T Consensus 72 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~-------~~~~~~~a~~lia~~p~i~a~~y~~~~g~-~ 137 (367)
T 2p2w_A 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSM------DGN-------DEDLREKAIRVASVFPTILAYYYRYSKGK-E 137 (367)
T ss_dssp CCCHHHHHHHTTSCSCCCHHHHHHHHHSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCHHHHHHHHhCccCCChHHHHHHHHHHHhcc------CCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 999999999999999999999999999999874 221 78999999999999999999999998754 5
Q ss_pred ccCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 233 IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 233 ~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
+++|++++||++||++||++..+..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||||
T Consensus 138 ~i~p~~~l~~a~nfl~ml~~~~~~~~~~ld~~LvL~ADHg-~NaSTftaRvvaSt~ad~ysavaagi~aL~GPlHGGAne 216 (367)
T 2p2w_A 138 LIRPRKDLSHVENFYYMMFGERNEKIRLLESAFILLMEQD-INASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASE 216 (367)
T ss_dssp CCCCCTTSCHHHHHHHHHHSCCCTTHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHH
T ss_pred CCCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHHccCCccCChHH
Confidence 7889999999999999998744888999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhhh
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~~ 392 (442)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++.+++++++++.++|+++.
T Consensus 217 ~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~- 288 (367)
T 2p2w_A 217 KVPPMLEEI----G---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIV- 288 (367)
T ss_dssp HHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHh----c---CchhHHHHHHHHHHcCCccccCCccccCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHHH-
Confidence 999999876 5 56899999999999999999999999999999999999999998667799999999999964
Q ss_pred hHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 393 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 393 ~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++ .|+++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 289 ---~~~-~k~l~pNVDf~sg~v~~~lGip~~~~t~lFai~R~~Gw~AH~~ 334 (367)
T 2p2w_A 289 ---SNK-IKNIYPNVDLYSSVLFEELGFPRNMFTALFATARVVGWTAHVI 334 (367)
T ss_dssp ---HTT-GGGCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---HHh-ccCCCCChHHHHHHHHHHhCCChhhhhhHHHHhccccHHHHHH
Confidence 344 6899999999999999999999988888888999999999973
No 9
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=100.00 E-value=6.1e-94 Score=737.95 Aligned_cols=347 Identities=23% Similarity=0.333 Sum_probs=299.4
Q ss_pred CCCcccceeecc---cccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCH
Q 013473 63 GKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSK 138 (442)
Q Consensus 63 g~~~~g~~tv~~---~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~ 138 (442)
|.+++.+.|+++ +.+||+|+.+++|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~Gl~gv~~~~T~Is~idg~~g~L~YRGy~I~dLa~~~---------~fEevayLLl~G~LPt~ 88 (404)
T 3o8j_A 18 DTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLIHGKLPTR 88 (404)
T ss_dssp -----------------------CCCEESSEEECC-CCCEEETTEEHHHHHHHC---------CHHHHHHHHHTSSCCCH
T ss_pred CcchhhcCcccCCCCCCCCCCCceEeeeeceeeeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcCcCCCH
Confidence 444555555555 56899999999999999999887 699999999999986 59999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhH
Q 013473 139 EQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 218 (442)
Q Consensus 139 ~q~~~~~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~ 218 (442)
+|+++|+++|.+++.||+++.++|+.||+++|||++|+++|++|++.++.. ++..++..++++++||||+|+
T Consensus 89 ~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~~~~~~--------~d~~~~~~~~~a~rLiAk~pt 160 (404)
T 3o8j_A 89 DELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEK--------EGHTVSGARDIADKLLASLSS 160 (404)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC--------TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCccc--------ccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754332 122356788999999999999
Q ss_pred HHHHHHHHHhcCCcccC-CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHH
Q 013473 219 VAAYVYQRIYKDGKIIP-KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSF 295 (442)
Q Consensus 219 i~a~iyr~~~~~~~~~~-p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~av 295 (442)
|+|++||.+.++ +++. +++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|+
T Consensus 161 i~a~~yr~~~g~-~~i~~~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~N~St~taRvvaSt~ad~ysav 238 (404)
T 3o8j_A 161 ILLYWYHYSHNG-ERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAI 238 (404)
T ss_dssp HHHHHHHHHHHC-CCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SSHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhcCCCHHHHH
Confidence 999999987654 4555 55899999999999976 78899999999999999999 8999999999999999999999
Q ss_pred HHHHhhhccccccCchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC-
Q 013473 296 AAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL- 374 (442)
Q Consensus 296 aAgl~aL~GPlHGgAne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~- 374 (442)
+|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++.
T Consensus 239 aagi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~l~~~a~~l~~ 311 (404)
T 3o8j_A 239 IGAIGALRGPKHGGANEVSLEIQQRY----E---TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSE 311 (404)
T ss_dssp HHHHHHHTSTTTTCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhcCCcccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999764 5 578999999999999999999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 375 --PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 375 --~~~~~~~l~~~l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++++++++.++|+++.+ .|+++||||||+|+++++||||.+.|+++|.++|++||++|++
T Consensus 312 ~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~~~~t~lFaisR~~Gw~AH~~ 374 (404)
T 3o8j_A 312 EGGSLKMYHIADRLETVMWE-------TKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHII 374 (404)
T ss_dssp HHSCCHHHHHHHHHHHHHHH-------HHCCCBCTTTHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHH-------hcCCCcChHHHHHHHHHHcCCChHhHHHHHHHHHHHHHHHHHH
Confidence 468999999999999844 4899999999999999999999887777788999999999973
No 10
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=2.5e-93 Score=726.44 Aligned_cols=337 Identities=23% Similarity=0.335 Sum_probs=315.3
Q ss_pred cccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
|.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.
T Consensus 1 v~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~ 71 (363)
T 2c6x_A 1 VHYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNH---------SFEEAAYLILFGKLPSTEELQVFKDKLAAERN 71 (363)
T ss_dssp CCGGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTS
T ss_pred CCCcCCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccC
Confidence 34799999999999999999999 699999999999996 69999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
+|+.+.++++.+|++.|||++|+++|++|++ + . . .|+..++++++|||++|+|+|++||++.++ ++
T Consensus 72 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~-~-~----------~-~~~~~~~~a~~Lia~~p~i~a~~~~~~~g~-~~ 137 (363)
T 2c6x_A 72 LPEHIERLIQSLPNNMDDMSVLRTVVSALGE-N-T----------Y-TFHPKTEEAIRLIAITPSIIAYRKRWTRGE-QA 137 (363)
T ss_dssp CCHHHHHHHHHSCSSSCHHHHHHHHHHHHCC-S-S----------C-CSSCCHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCcccCCchHHHHHHHHhhcC-C-C----------C-ChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 9999999999999999999999999999986 1 0 1 278999999999999999999999998744 57
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||
T Consensus 138 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 216 (363)
T 2c6x_A 138 IAPSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEHG-MNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAP 216 (363)
T ss_dssp CCCCTTSCSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCC
T ss_pred cCCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHhcCccHHHHHHHHHHHcccCccCCch
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVP 391 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~ 391 (442)
|+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++++++++++++.++|+++.
T Consensus 217 e~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~ 289 (363)
T 2c6x_A 217 SAVTKMLEDI----G---EKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAI 289 (363)
T ss_dssp HHHHHHHHTC----C---SSTTHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHcCCcccCCCCcccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999765 5 46789999999999999999999999999999999999999998778999999999999997
Q ss_pred hhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 392 PILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 392 ~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+...+||+.|++|||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 290 ~~~g~yf~~k~l~pNVD~~sg~i~~~lG~p~~~~t~lF~i~R~~Gw~AH~~ 340 (363)
T 2c6x_A 290 RLLEIYKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMVGWCAHVL 340 (363)
T ss_dssp HHHHHHSCSSCCCBCTHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCCCcChHHHHHHHHHHhCCChhhhhhhhHHhccccHHHHHH
Confidence 733378999999999999999999999999988888888999999999973
No 11
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=1.3e-92 Score=723.47 Aligned_cols=336 Identities=26% Similarity=0.371 Sum_probs=313.1
Q ss_pred ccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~l 72 (371)
T 1aj8_A 2 AKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELS---------TFEEVVYLLWWGKLPSLSELENFKKELAKSRGL 72 (371)
T ss_dssp CGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 3799999999999999999999 699999999999996 699999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCC-CCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-YWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~-~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
|+.+.++|+.+|+++|||++|+++|++|++.++ +. .+. +|+..++++++|||++|+|+|++||++.++ ++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~-~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 143 (371)
T 1aj8_A 73 PKEVIEIMEALPKNTHPMGALRTIISYLGNIDD-------SG-DIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGL-EY 143 (371)
T ss_dssp CHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHST-------TT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHhccCC-------cc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 999999999999999999999999999997422 22 223 689999999999999999999999998754 57
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||
T Consensus 144 i~p~~~ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 222 (371)
T 1aj8_A 144 VPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAV 222 (371)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCC-CChhHHHHHHHhhcCCcHHHHHHHHHHHcCCCccCCch
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVP 391 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~~~~~~~~l~~~l~~~~~ 391 (442)
|+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ +++++++++.++|+++.
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~~~~~-~~~~~~~~a~~le~~~~ 294 (371)
T 1aj8_A 223 EEAIKQFMEI----G---SPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKL-GDKKLFEIAERLERLVE 294 (371)
T ss_dssp HHHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCeeecCCccccCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 9999999876 5 56899999999999999999999999999999999999999998 67899999999999873
Q ss_pred hhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 392 PILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 392 ~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++++.|+++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 295 ----~~~~~k~l~pNVD~~sg~i~~~lGip~~~~t~lF~i~R~~Gw~AH~~ 341 (371)
T 1aj8_A 295 ----EYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLA 341 (371)
T ss_dssp ----HHTTTTTCCBCTTTTHHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----HhccCCCCCCChHHHHHHHHHHcCCCHHhhhhHHHHhccccHHHHHH
Confidence 46778999999999999999999999988888899999999999973
No 12
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=2.7e-92 Score=722.40 Aligned_cols=337 Identities=26% Similarity=0.374 Sum_probs=313.1
Q ss_pred ccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.+
T Consensus 4 ~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~l 74 (377)
T 1iom_A 4 ARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKS---------SFEETTFLLLHGRLPRRQELEEFSAALARRRAL 74 (377)
T ss_dssp CGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSC
T ss_pred CcccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCC
Confidence 3799999999999999999999 699999999999996 699999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~ 234 (442)
|+.+.++|+.+|+++|||++|+++|++|++.++ +.. +.+|+..++++++|||++|+|+|++||++.++ +++
T Consensus 75 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~~-~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i 145 (377)
T 1iom_A 75 PAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDP-------TEG-DISREALYEKGLDLIAKFATIVAANKRLKEGK-EPI 145 (377)
T ss_dssp CHHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCT-------TTT-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC
T ss_pred CHHHHHHHHhCCcCCCchhHHHHHHHHHhccCC-------Ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCC
Confidence 999999999999999999999999999997532 111 33689999999999999999999999998754 578
Q ss_pred CCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 235 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
+|+++++|++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 146 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne 224 (377)
T 1iom_A 146 PPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHG-FNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANE 224 (377)
T ss_dssp CCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHcccCccCChhH
Confidence 899999999999999976 78999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSKLFEV 389 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~l~~~ 389 (442)
+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.++|++
T Consensus 225 ~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~ 297 (377)
T 1iom_A 225 AVMRMIQEI----G---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEE 297 (377)
T ss_dssp HHHHHHHHH----C---SHHHHHHHHHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHh----c---CchhHHHHHHHHHHCCCcccCCCCcccCCCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999876 5 578999999999999999999999999999999999999999873 678999999999999
Q ss_pred hhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 390 VPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 390 ~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+.+ +++ .|+++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 298 ~~~---~~~-~k~l~pNVD~~sg~i~~~lG~p~~~~t~lF~i~R~~Gw~AH~~ 346 (377)
T 1iom_A 298 AGK---VLN-PRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHIL 346 (377)
T ss_dssp HHH---HHT-TTTCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHH---Hhc-cCCCCCChHHHHHHHHHHcCCCHHhhhhHHHHhccccHHHHHH
Confidence 865 245 7899999999999999999999988888889999999999973
No 13
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=1.2e-92 Score=725.92 Aligned_cols=341 Identities=23% Similarity=0.348 Sum_probs=312.4
Q ss_pred cccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
+.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.
T Consensus 5 ~~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~ 75 (378)
T 1a59_A 5 IHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKC---------SFEQVAYLLWNSELPNDSELKAFVNFERSHRK 75 (378)
T ss_dssp CCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCS
T ss_pred CCCccCCCeeeeeeceEEECCCCeEEEcCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999 799999999999996 69999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
+|+.+.++|+.+|+++|||++|+++|++|++.++ +.. +.+|+..++++++|||++|+|+|++||+.+++ ++
T Consensus 76 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~~-~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 146 (378)
T 1a59_A 76 LDENVKGAIDLLSTACHPMDVARTAVSVLGANHA-------RAQ-DSSPEANLEKAMSLLATFPSVVAYDQRRRRGE-EL 146 (378)
T ss_dssp CCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCT-------TTT-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCC-------Ccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 9999999999999999999999999999997432 111 33789999999999999999999999998754 57
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||
T Consensus 147 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 225 (378)
T 1a59_A 147 IEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHS-FNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGAN 225 (378)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCch
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHH
Q 013473 312 QEVLLWIKSVVDECGENVT---TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSK 385 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s---~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~~~~~l~~~ 385 (442)
|+|++||.++.+. |++.+ ++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.+
T Consensus 226 e~v~~~l~~i~~~-~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~~~~a~~ 304 (378)
T 1a59_A 226 EAVMHTFEEIGIR-KDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNG 304 (378)
T ss_dssp HHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCccccchHHHHHHHHHHHHhCCCeeeCCCCcccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999987432 22211 27899999999999999999999999999999999999999873 67899999999
Q ss_pred HHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 386 l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
||+++.+ .||++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 305 le~~~~~-------~k~l~pNVD~~sg~i~~~lGip~~~~t~lF~isR~~Gw~AH~~ 354 (378)
T 1a59_A 305 LEAAMEE-------AKQIKPNLDYPAGPTYNLMGFDTEMFTPLFIAARITGWTAHIM 354 (378)
T ss_dssp HHHHHHH-------HHCCCBCTHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HhCCCCChHHHHHHHHHHhCCChhhcchhhhhhcchhHHHHHH
Confidence 9999854 1799999999999999999999988888888999999999973
No 14
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=1.5e-92 Score=724.25 Aligned_cols=335 Identities=26% Similarity=0.382 Sum_probs=312.0
Q ss_pred ccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 013473 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (442)
Q Consensus 76 ~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~l 154 (442)
.+||+|+++++|+||+||+++| |+||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.+
T Consensus 5 ~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LL~~G~lPt~~el~~f~~~l~~~~~l 75 (377)
T 1o7x_A 5 SKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGKLPTKKELNDLKAKLNEEYEV 75 (377)
T ss_dssp CGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCC
T ss_pred CcccCCCeeeeeeCeEEECCCCEEEECCccHHHHHcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCC
Confidence 3799999999999999999999 699999999999996 699999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 013473 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (442)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~ 234 (442)
|+.+.++++.+|+++|||++|+++|++|++. |++. . .|+..++++++|||++|+|+|++||++.++ +++
T Consensus 76 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~-~---~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i 144 (377)
T 1o7x_A 76 PQEVLDTIYLMPKEADAIGLLEVGTAALASI------DKNF-K---WKENDKEKAISIIAKMATLVANVYRRKEGN-KPR 144 (377)
T ss_dssp CHHHHHHHHHSCTTSCHHHHHHHHHHHHHHH------CCCC-C---SSSSHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC
T ss_pred CHHHHHHHHhCcccCCcHHHHHHHHHHHhhc------CCCc-C---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 9999999999999999999999999999874 2222 1 389999999999999999999999988754 578
Q ss_pred CCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchH
Q 013473 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (442)
Q Consensus 235 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne 312 (442)
+|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 145 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~ad~~savaagi~aL~GplHGGAne 223 (377)
T 1o7x_A 145 IPEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHE-VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAE 223 (377)
T ss_dssp CCCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHH
T ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CChHHHHHHHHHhcCCcHHHHHHHHHHhcCCCCCCChHH
Confidence 899999999999999976 78999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CC-ChHHHHHHHHH
Q 013473 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PD-DPLFQLVSKLF 387 (442)
Q Consensus 313 ~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~-~~~~~l~~~l~ 387 (442)
+|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. ++ +++++++.++|
T Consensus 224 ~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~~a~~le 296 (377)
T 1o7x_A 224 EAFKQFIEI----G---DPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLE 296 (377)
T ss_dssp HHHHHHHHH----C---SGGGHHHHHHHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----C---ChhHHHHHHHHHHHhcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999886 5 5689999999999 99999999999999999999999999999883 45 78999999999
Q ss_pred HhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 388 EVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 388 ~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
+++.+++ +.||++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 297 ~~~~~~~----~~k~l~pNVD~~sg~v~~~lG~p~~~~t~lF~i~R~~Gw~AH~~ 347 (377)
T 1o7x_A 297 ELGIKQF----SSKGIYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHII 347 (377)
T ss_dssp HHHHHHH----TTTTCCBCTTTTHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----hhcCCCCChHHHHHHHHHHhCCChhhhhhHHHHhhhccHHHHHH
Confidence 9997644 67999999999999999999999988888888999999999974
No 15
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-92 Score=723.89 Aligned_cols=334 Identities=21% Similarity=0.317 Sum_probs=311.1
Q ss_pred cCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Q 013473 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (442)
Q Consensus 77 ~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~lp 155 (442)
+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.+|
T Consensus 7 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp 77 (378)
T 1vgm_A 7 RGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYA---------SYEELIHLMLYGELPNRQQLNQIKGIINESFEVP 77 (378)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CccCCCeeeeeeceEEECCCCeEEEcCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 699999999999999999999 699999999999986 6999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 013473 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (442)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~~~ 235 (442)
+.+.++++.+|+++|||++|+++|++|++. |++.. + |+..++++++|||++|+|+|++||++.++ ++++
T Consensus 78 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i~ 146 (378)
T 1vgm_A 78 EQVISTIFSMPRNCDAIGMMETAFGILASI------YDPKW---N-RATNKELAVQIIAKTATITANIYRAKEGL-KPKI 146 (378)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHH------HCCCC---C-TTTHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHhcc------CCccC---C-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCC
Confidence 999999999999999999999999999874 32221 2 89999999999999999999999988644 5788
Q ss_pred CCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCchHH
Q 013473 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (442)
Q Consensus 236 p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAne~ 313 (442)
|+++++|++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+
T Consensus 147 p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~ 225 (378)
T 1vgm_A 147 PEPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHE-VPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEE 225 (378)
T ss_dssp CCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCChHHH
Confidence 99999999999999976 78999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---C-CChHHHHHHHHHH
Q 013473 314 VLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSKLFE 388 (442)
Q Consensus 314 v~~~l~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~-~~~~~~l~~~l~~ 388 (442)
|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. + ++++++++.++|+
T Consensus 226 v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~le~ 298 (378)
T 1vgm_A 226 AFKQFVEI----G---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYYEIAERIEK 298 (378)
T ss_dssp HHHHHHHH----C---SGGGHHHHHHHHTTTSCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----C---CHhHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999886 5 5689999999999 99999999999999999999999999999873 4 5689999999999
Q ss_pred hhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 389 ~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
++.+++ +.||++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 299 ~~~~~~----~~k~l~pNVDf~sg~i~~~lGip~~~~t~lFaisR~~Gw~AH~~ 348 (378)
T 1vgm_A 299 LGVDTF----GSKHIYPNTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHII 348 (378)
T ss_dssp HHHHHH----GGGTCCBCTTTTHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----hhCCCCCChHHHHHHHHHHhCCCHHhhhHHHHHHhhccHHHHHH
Confidence 997744 56899999999999999999999988888888999999999973
No 16
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-92 Score=723.12 Aligned_cols=334 Identities=28% Similarity=0.412 Sum_probs=310.6
Q ss_pred cccCcccccccceecceecCCCC-ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~ 153 (442)
+.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|++||++|+++|+++|..++.
T Consensus 3 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~ 73 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFS---------NFEEVSYLILYGKLPNREELNWFQEKLREERY 73 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCC
T ss_pred CCCccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccC
Confidence 44899999999999999999999 699999999999996 69999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 013473 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (442)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~~ 233 (442)
+|+.+.++|+.+|+++|||++|+++|++|++.+ + . + |+..++++++|||++|+|+|++||++.++ ++
T Consensus 74 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~-------~-~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 140 (373)
T 1vgp_A 74 LPDFIIKFLREVRKDAQPMDILRTAVSLLGIED-------S-K---N-DERTDIKGIKLISKFPTIVANYARLRKGL-DI 140 (373)
T ss_dssp CCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHC-------C-C---C-SSCHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHHhccC-------C-C---C-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 999999999999999999999999999998742 2 1 2 88999999999999999999999988754 57
Q ss_pred cCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCch
Q 013473 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (442)
Q Consensus 234 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgAn 311 (442)
++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||
T Consensus 141 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~aL~GplHGGAn 219 (373)
T 1vgp_A 141 IEPDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHE-MNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGAN 219 (373)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHhcCCCCcCCHH
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCC--hHHHHHHHH
Q 013473 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDD--PLFQLVSKL 386 (442)
Q Consensus 312 e~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~~---~~~--~~~~l~~~l 386 (442)
|+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +.+ ++++++.+|
T Consensus 220 e~v~~ml~~i----~---~~~~~~~~i~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~a~~l 292 (373)
T 1vgp_A 220 YEALKMFKEI----G---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKV 292 (373)
T ss_dssp CHHHHHHHHS----C---SSSSHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 9999999875 5 467899999999999999999999999999999999999999873 555 899999999
Q ss_pred HHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCCCCcchhhhHHhhhhhhcccC
Q 013473 387 FEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 387 ~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~tv~~~gR~ag~~~~~~ 442 (442)
|+++.+ +++.|+++||||||+|+++++||||.+.|+++|+++|++||++|++
T Consensus 293 e~~~~~----~~~~k~l~pNVDf~sg~i~~~lGip~~~~t~lFaisR~~Gw~AH~~ 344 (373)
T 1vgp_A 293 EEIGIK----YLGPKGIYPNVDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAHIM 344 (373)
T ss_dssp HHHHHH----HHGGGTCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----hcccCCCCCChHHHHHHHHHHcCCCHHhhhhhHHhhccccHHHHHH
Confidence 999743 5567999999999999999999999988888888999999999973
No 17
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=2e-92 Score=725.15 Aligned_cols=337 Identities=22% Similarity=0.331 Sum_probs=313.5
Q ss_pred cccCcccccccceecceecCCCC-ceecCCCHHHHhh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q 013473 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQK-LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (442)
Q Consensus 75 ~~~Glrg~~~~~t~iS~iD~~~G-i~yRGy~I~eLa~-~~p~~~~~~~~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~ 152 (442)
+.+||+|+++++|+||+||+++| ++||||+|+||++ +. +||||+||||+|++||++|+++|+++|..++
T Consensus 7 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~ 77 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGA---------QDEEIQYLFLYGNLPTEQELRKYKETVQKGY 77 (385)
T ss_dssp BCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTTC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHGGG
T ss_pred CCCCcCCCeeeeeeCeEEECCCCEEEECCccHHHHHhcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc
Confidence 45899999999999999999999 6999999999999 64 6999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCCCChHHHHHHHHHHhhhcchhhHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 013473 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (442)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~~~~~~~y~~~~~~~~~~e~~~e~a~~LiA~lp~i~a~iyr~~~~~~~ 232 (442)
.+|+.+.++++.+|+++|||++|+++|++|++. |++. +++|+..++++++|||++|+|+|++||++.++ +
T Consensus 78 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~---~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~ 147 (385)
T 2ifc_A 78 KIPDFVINAIRQLPRESDAVAMQMAAVAAMAAS------ETKF---KWNKDTDRDVAAEMIGRMSAITVNVYRHIMNM-P 147 (385)
T ss_dssp CCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHH------CTTC---CCCTTTHHHHHHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHHHHHhc------CCcc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 999999999999999999999999999999974 2222 24799999999999999999999999988644 5
Q ss_pred ccCCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhhhccccccCc
Q 013473 233 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310 (442)
Q Consensus 233 ~~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiL~ADHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GPlHGgA 310 (442)
+++|+++++|++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||
T Consensus 148 ~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGA 226 (385)
T 2ifc_A 148 AELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHE-VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 226 (385)
T ss_dssp CCCCCCCSCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSSH
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCC-ccHHHHHHHHHHhcCCcHHHHHHHHHHHccCCccCCh
Confidence 78899999999999999976 78999999999999999998 8999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCCcHHHHHHHHHhh----CCCChHHHHHHH
Q 013473 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKH----LPDDPLFQLVSK 385 (442)
Q Consensus 311 ne~v~~~l~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGfGH~vyr~~DPRa~~l~~~a~~~----~~~~~~~~l~~~ 385 (442)
||+|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++ .+++++++++.+
T Consensus 227 ne~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~ 299 (385)
T 2ifc_A 227 AEAAIAQFDEI----K---DPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATK 299 (385)
T ss_dssp HHHHHHHHHHH----C---SGGGHHHHHHHHTTTSSSCCTTBCCSSCSSCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 99999999876 5 5689999999999 9999999999999999999999999999988 346799999999
Q ss_pred HHHhhhhhHHhcCCCCCCccchhHHHHHHHHhcCCCC--CCcchhhhHHhhhhhhcccC
Q 013473 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAE--ARYDADFLSGTTANCGLTIL 442 (442)
Q Consensus 386 l~~~~~~~l~~~~k~k~l~PNVD~~sg~l~~~lGlp~--~~~~tv~~~gR~ag~~~~~~ 442 (442)
||+++.+++ +.||++||||||+|+++++||||. +.|+++|+++|++||++|++
T Consensus 300 le~~~~~~~----~~k~l~pNVD~~sg~v~~~lGip~~~~~~t~lF~isR~~Gw~AH~~ 354 (385)
T 2ifc_A 300 LEDFGIKAF----GSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFI 354 (385)
T ss_dssp HHHHHHHHH----GGGTCCBCTTTTHHHHHHHHTCCSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhcCCCCChHHHHHHHHHHcCCCcchhhhhhHHHHhhcccHHHHHH
Confidence 999997744 568999999999999999999999 88888899999999999974
No 18
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=45.70 E-value=57 Score=32.84 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
-++-+.+|++|+|+.|++++.+.|..-|.-+.+ ... ....++.+ ..++|-..+++|+++|.
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaS--t~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 153 LTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSA--TLSDIYSAVTAAIATLR 217 (375)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHhcc
Confidence 468899999999999999999999998766543 444 34455554 44789999999999984
No 19
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=40.73 E-value=26 Score=34.30 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHhCCCcccccCCCCCCCCCC-cHHHHHHHHHhh
Q 013473 330 TTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (442)
Q Consensus 330 s~~~i~~~v~~~l~~g~~IpGfGH~vyr~~DP-Ra~~l~~~a~~~ 373 (442)
++|++++.+++.++.|+-|.+-||-+.+.++| ..+++.+.+++.
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey 346 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEF 346 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999988887 577777777664
No 20
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=39.37 E-value=12 Score=32.83 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.5
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..|||++++||.+- +.|+++-|+
T Consensus 15 FtyrG~~ld~Ll~m----------s~e~l~~L~ 37 (142)
T 3u5c_P 15 HSYRGVDLEKLLEM----------STEDFVKLA 37 (142)
T ss_dssp CBSSSCBHHHHHTT----------CHHHHHHHS
T ss_pred EEEccccHHHHHcC----------CHHHHHHHh
Confidence 48999999999986 478988775
No 21
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=38.84 E-value=58 Score=33.23 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++.+|+|+.|++++.+.|..-|.-+.+ +.. ...+++.+ ..++|-..+++++++|.
T Consensus 196 s~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaS--t~ad~ysavaagi~aL~ 259 (414)
T 3hwk_A 196 GYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTS--TQSDIYSAVTGAIGALK 259 (414)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHhc
Confidence 57788999999999999999999998865542 444 34455554 34678899999999884
No 22
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.64 E-value=11 Score=32.60 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.4
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..|||++++||.+- +.|+++-|+
T Consensus 6 ftyrG~~ld~L~~m----------s~~~l~~L~ 28 (132)
T 3j20_T 6 FRYRGYTLEQLMNM----------SLEELARLF 28 (132)
T ss_dssp CCSSSSCHHHHHHH----------HHHHHHHHS
T ss_pred EEEcCCcHHHHHcC----------CHHHHHHHh
Confidence 47999999999987 478888775
No 23
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=36.95 E-value=1e+02 Score=30.93 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++|+|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 156 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 219 (385)
T 2ifc_A 156 SYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVS--TLSDMYSGITAALAALK 219 (385)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 57789999999999999999999998866642 4443 3344444 45688889999999883
No 24
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=36.56 E-value=1e+02 Score=30.80 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMAL 182 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal 182 (442)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|
T Consensus 154 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL 216 (378)
T 1a59_A 154 DYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITS--TLADLHSAVTGAIGAL 216 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 57788999999999999999999988866542 4443 3344444 4578999999999998
No 25
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=36.48 E-value=1.1e+02 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++|+|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 151 s~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 214 (371)
T 1aj8_A 151 SHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGS--TLSDYYSAILAGIGALK 214 (371)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcC
Confidence 47788999999999999999999988866542 4443 3344444 45788899999999883
No 26
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=36.10 E-value=1.1e+02 Score=30.73 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (377)
T 1iom_A 152 SHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFS--TETDLYSAITAAVASLK 215 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 57788999999999999999999988866652 4443 3344444 45788899999999883
No 27
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=35.46 E-value=1.1e+02 Score=31.01 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCH--HHHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
-++-+.+|.+++|+.|++++.+.|..-|.-+.+ +.. ....++.+- .++|-..+++|+++|.
T Consensus 182 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaSt--~ad~ysavaagi~aL~ 246 (404)
T 3o8j_A 182 DSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGT--GSDVYSAIIGAIGALR 246 (404)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHhc--CCCHHHHHHHHHHHcc
Confidence 467788999999999999999999998866552 343 344555553 4679999999999984
No 28
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=34.52 E-value=1.2e+02 Score=30.42 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++|+|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 148 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~aL~ 211 (373)
T 1vgp_A 148 SHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVAS--TFSDLYSSIVAGISALK 211 (373)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCccHHHHHHHHHHhcC
Confidence 47788999999999999999999998866542 4443 3344444 45788899999999983
No 29
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=34.45 E-value=1.2e+02 Score=30.83 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++|+|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 182 s~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aS--t~ad~~savaagi~aL~ 245 (409)
T 2ibp_A 182 GHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAHVVAS--TLSDLYSSVAAAIAALK 245 (409)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 47788999999999999999999998866642 4443 3344444 45788888999999883
No 30
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=33.93 E-value=1.3e+02 Score=30.24 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++++|+.|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (378)
T 1vgm_A 152 SYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASS--TLSDMYSCIVAALAALK 215 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 57788999999999999999999998866652 4443 3344444 45688888989999884
No 31
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=33.92 E-value=14 Score=32.44 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=20.0
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..|||++++||.+..... .+.....||++-|+
T Consensus 11 ftyrG~~l~~L~~~~~~~-~~~~m~~~~~~~l~ 42 (144)
T 2xzm_S 11 FTFRGKGLEELTALASGS-NSEKLISDELAALF 42 (144)
T ss_dssp CCCCTTCHHHHHHHHSST-TCCSSSCHHHHHHS
T ss_pred eeecCCcHHHHHhhhccc-ccccCCHHHHHHHh
Confidence 489999999999932211 11223457776664
No 32
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=30.20 E-value=74 Score=31.78 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.++++++|+.|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+++|+++|.
T Consensus 145 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 208 (363)
T 2c6x_A 145 GHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNASTFSARVTLS--TESDLVSAVTAALGTMK 208 (363)
T ss_dssp CSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh--cCccHHHHHHHHHHHcc
Confidence 4568889999999999999999998875443 24443 3344444 45688899999999884
No 33
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=29.96 E-value=1.1e+02 Score=29.48 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCCHHHHhhhCCCCCCCCCCCHHHHHHHHH-hCCCCCHHHHHHHHHHHHhhCCCC--HHHHHHHHc-CC--CCCChHHHH
Q 013473 102 GLSIPECQKLLPAAKPDGEPLPEGLLWLLL-TGKVPSKEQVDGLSKELRDRATVP--DYVYKAIDA-LP--VTAHPMTQF 175 (442)
Q Consensus 102 Gy~I~eLa~~~p~~~~~~~~~~Eev~~LLl-~G~lPt~~q~~~~~~~l~~~~~lp--~~v~~~i~~-lP--~~~hPM~~l 175 (442)
|.+..|+..+.+ .+++++.|. +||.+...+.+...-+-.+..++. .++.++|.. +| +..||.+..
T Consensus 127 ~~tA~~~vn~~~---------~~~L~~i~~~yGee~~a~~iA~~Iv~~R~~~pi~tt~~L~~ii~~~~p~~~~~hpatr~ 197 (285)
T 1wg8_A 127 GPTAKEVVNRLP---------LEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVRKAVGFRRAGHPARKT 197 (285)
T ss_dssp SCCHHHHHHHSC---------HHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHHHCCCSSSCTTHHH
T ss_pred CCcHHHHHhhCC---------HHHHHHHHHHhcCHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCCCCCCCchHHH
Confidence 899999999873 678887664 599998877765543333334554 346666644 56 446997765
Q ss_pred HHHH
Q 013473 176 ASGV 179 (442)
Q Consensus 176 ~~av 179 (442)
..|+
T Consensus 198 FQAl 201 (285)
T 1wg8_A 198 FQAL 201 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 34
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=26.23 E-value=14 Score=32.72 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=0.0
Q ss_pred ceecCCCHHHHhhhCCCCCCCCCCCHHHHHHHH
Q 013473 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLL 130 (442)
Q Consensus 98 i~yRGy~I~eLa~~~p~~~~~~~~~~Eev~~LL 130 (442)
..|||++++||.+- +.|+++-|+
T Consensus 24 FtYrG~~ld~Ll~m----------s~eel~~L~ 46 (154)
T 3iz6_R 24 YSYRGVDLDALLDM----------STDDLVQLF 46 (154)
T ss_dssp ---------------------------------
T ss_pred EEEecCcHHHHHhC----------CHHHHHHHc
Confidence 38999999999986 368877765
No 35
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=25.77 E-value=65 Score=31.10 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHHHhC-C---CcccccCCCCCCCCCC-cHHHHHHHHHhh
Q 013473 330 TTEQLKDYVWKTLNS-G---KVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (442)
Q Consensus 330 s~~~i~~~v~~~l~~-g---~~IpGfGH~vyr~~DP-Ra~~l~~~a~~~ 373 (442)
+++++++.+++.++. | +-|.+.||-+.+.++| ..+.+.+.+++.
T Consensus 287 t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~~a~v~~v~~~ 335 (338)
T 2eja_A 287 SEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKSF 335 (338)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999875 3 5799999999887777 666777777653
No 36
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=25.04 E-value=53 Score=32.30 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHhC---CCcccccCCCCCCCCCC-cHHHHHHHHHhh
Q 013473 330 TTEQLKDYVWKTLNS---GKVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (442)
Q Consensus 330 s~~~i~~~v~~~l~~---g~~IpGfGH~vyr~~DP-Ra~~l~~~a~~~ 373 (442)
+++++++.+++.++. ++-|.+.||-+...++| ..+++.+.+++.
T Consensus 313 t~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p~env~a~v~~v~~~ 360 (367)
T 1r3s_A 313 SEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH 360 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 678899999988764 47899999999988887 566677776654
No 37
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=24.63 E-value=73 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHhh-CCCCHHHHHHHH
Q 013473 133 GKVPSKEQVDGLSKELRDR-ATVPDYVYKAID 163 (442)
Q Consensus 133 G~lPt~~q~~~~~~~l~~~-~~lp~~v~~~i~ 163 (442)
..+-|.+|++++..||..| +.+|+.|.++++
T Consensus 38 a~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~ 69 (173)
T 2qsr_A 38 RQIDNRVNYEELQEELIDRFGEYPDVVAYLLE 69 (173)
T ss_dssp HTCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCCcHHHHHHHH
Confidence 4557899999999999877 689999998887
No 38
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=21.30 E-value=2.4e+02 Score=28.23 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CCHH--HHHHHHcCCCCCChHHHHHHHHHHhh
Q 013473 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (442)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~q~~~~~~~l~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (442)
++-+.+..+|+|+-|++.+.+.|..-|.-+.+ +... ...++.+ ..++|-..+++|+++|.
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~ad~~savaagi~aL~ 214 (377)
T 1o7x_A 151 SFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPASTTAALVAAS--TLSDMYSSLTAALAALK 214 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHH--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHh--cCCcHHHHHHHHHHhcC
Confidence 46788888999999999999999988866542 4443 3344444 34688888989999884
No 39
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=20.91 E-value=71 Score=31.62 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHhC----CCcccccCCCCCCCCCC-cHHHHHHHHHhh
Q 013473 330 TTEQLKDYVWKTLNS----GKVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (442)
Q Consensus 330 s~~~i~~~v~~~l~~----g~~IpGfGH~vyr~~DP-Ra~~l~~~a~~~ 373 (442)
+++++++.+++.++. ++-|.+.||-+...++| ..+++.+.+++.
T Consensus 310 t~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~p~tp~Env~a~veav~~~ 358 (368)
T 4exq_A 310 PPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRH 358 (368)
T ss_dssp CHHHHHHHHHHHHHHHCSCSCEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 678899999988862 56899999999988887 566666666553
No 40
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=20.87 E-value=99 Score=30.00 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHHHhC-C---CcccccCCCCCCCCCC-cHHHHHHHHHhh
Q 013473 330 TTEQLKDYVWKTLNS-G---KVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (442)
Q Consensus 330 s~~~i~~~v~~~l~~-g---~~IpGfGH~vyr~~DP-Ra~~l~~~a~~~ 373 (442)
+++++++.+++.++. | +-|.+.||-+...++| ..+.+.+.+++.
T Consensus 300 t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~env~a~v~~v~~~ 348 (354)
T 3cyv_A 300 PPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRL 348 (354)
T ss_dssp CHHHHHHHHHHHHTTTTTSSCEEBCBSSCCCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 678999999999875 3 5799999999887776 566677766654
Done!