Your job contains 1 sequence.
>013474
MTNKTRPFSWSRLLLNQNLKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNASQ
EYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEVEREKGRE
REARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTDSDSDEDDER
FSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVI
GELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVEN
AEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKL
LEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYH
GVVGFAKAKGPAVPIALQKVTW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013474
(442 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010896 - symbol:AT1G64880 species:3702 "Arabi... 902 3.8e-95 2
TIGR_CMR|CBU_0255 - symbol:CBU_0255 "ribosomal protein S5... 120 4.3e-06 1
TIGR_CMR|CJE_1858 - symbol:CJE_1858 "ribosomal protein S5... 110 1.0e-05 1
TIGR_CMR|CPS_0618 - symbol:CPS_0618 "ribosomal protein S5... 116 2.6e-05 1
UNIPROTKB|Q9KP01 - symbol:rpsE "30S ribosomal protein S5"... 115 3.3e-05 1
TIGR_CMR|VC_2579 - symbol:VC_2579 "ribosomal protein S5" ... 115 3.3e-05 1
TIGR_CMR|SO_0248 - symbol:SO_0248 "ribosomal protein S5" ... 114 4.6e-05 1
UNIPROTKB|P0A7W1 - symbol:rpsE "30S ribosomal subunit pro... 112 9.6e-05 1
TIGR_CMR|SPO_0502 - symbol:SPO_0502 "ribosomal protein S5... 113 0.00018 1
TIGR_CMR|CHY_2292 - symbol:CHY_2292 "ribosomal protein S5... 106 0.00066 1
>TAIR|locus:2010896 [details] [associations]
symbol:AT1G64880 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] [GO:0005768 "endosome" evidence=IDA]
[GO:0005802 "trans-Golgi network" evidence=IDA] InterPro:IPR000851
InterPro:IPR005324 InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719
PROSITE:PS50881 InterPro:IPR014720 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005794 GO:GO:0006412 GO:GO:0005768
Gene3D:3.30.160.20 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
GO:GO:0005802 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 eggNOG:COG0098 PANTHER:PTHR13718
EMBL:BT014967 IPI:IPI00525420 RefSeq:NP_564842.1 UniGene:At.14814
ProteinModelPortal:Q6GKU7 SMR:Q6GKU7 STRING:Q6GKU7 PaxDb:Q6GKU7
PRIDE:Q6GKU7 EnsemblPlants:AT1G64880.1 GeneID:842796
KEGG:ath:AT1G64880 TAIR:At1g64880 HOGENOM:HOG000238709
InParanoid:Q6GKU7 OMA:CKVTKGG PhylomeDB:Q6GKU7
ProtClustDB:CLSN2689025 Genevestigator:Q6GKU7 Uniprot:Q6GKU7
Length = 515
Score = 902 (322.6 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 199/383 (51%), Positives = 240/383 (62%)
Query: 69 SFSRKISTF---SHFRYNQTSKPSILLKSHFSTG----SAYSRVAQDLLXXXXXXXXXXX 121
+F R+IS + S F NQT S FS+ S RV ++L+
Sbjct: 36 TFPRRISGYYSSSFFPVNQTPWISSQRYRFFSSSTMSPSEADRVVRELIAEVEKEKQRER 95
Query: 122 XXXXXQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTXXXXXXXXXXX 181
QGLD KDID EDEEDY+G+ P IEKL+K+ LKD G+LN EE +
Sbjct: 96 EERQRQGLDYKDIDAEDEEDYLGIEPFIEKLKKQNLKDDGELNRREESSDSDSEYDEIDL 155
Query: 182 XXXAVNXXXXXXXXXXXXXXELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIG 241
ELLQ T++ET DEAF+WMNK+DKFE+KHF LR EYRVIG
Sbjct: 156 DEE--RKKEDIFNKKFQRHKELLQTLTKSETLDEAFRWMNKLDKFEEKHFKLRPEYRVIG 213
Query: 242 ELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENA 301
ELMNRLK AEGK+KF+LQQKLNRAMRLVEWKE +DPNNP NYGVI D V+
Sbjct: 214 ELMNRLKVAEGKEKFVLQQKLNRAMRLVEWKEAFDPNNPANYGVIER-------DNVQGG 266
Query: 302 EMDEEKRLLQGGVXXXXXXXXXXXXXXXX-----ILLERLNAIDKKLEEKLAELDHTFGK 356
+ E+RL+ G ILLE+LNAIDKKLE KL+ELDHTFGK
Sbjct: 267 GEEREERLVADGPKDDNDDDDDEEEFDDMKERDDILLEKLNAIDKKLEIKLSELDHTFGK 326
Query: 357 KGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLAC 416
KGK LEEEIR+LAE+RNALTEKKR+PLYRKG+DV +IDV + CKVTKGG+V +YTA++ C
Sbjct: 327 KGKRLEEEIRELAEDRNALTEKKRQPLYRKGYDVHVIDVKKVCKVTKGGRVERYTALMVC 386
Query: 417 GNYHGVVGFAKAKGPAVPIALQK 439
GNY G++G+AKAK A+QK
Sbjct: 387 GNYEGIIGYAKAKAETGQSAMQK 409
Score = 64 (27.6 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 1 MTNKTRPFSWSRLLLNQNLKNPTKTPLSFSRKIST 35
M+ +TR SW RLLL +N ++ SFSR+IST
Sbjct: 1 MSLRTRASSWPRLLLRRNPRS------SFSRQIST 29
>TIGR_CMR|CBU_0255 [details] [associations]
symbol:CBU_0255 "ribosomal protein S5" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000851 InterPro:IPR005324 InterPro:IPR005712
InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881
InterPro:IPR014720 GO:GO:0006412 Gene3D:3.30.160.20 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 KO:K02988 GO:GO:0015935 eggNOG:COG0098
HOGENOM:HOG000072595 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT ProtClustDB:PRK00550
HAMAP:MF_01307_B RefSeq:NP_819299.1 ProteinModelPortal:Q83EQ9
SMR:Q83EQ9 PRIDE:Q83EQ9 GeneID:1208136 KEGG:cbu:CBU_0255
PATRIC:17929203 BioCyc:CBUR227377:GJ7S-261-MONOMER Uniprot:Q83EQ9
Length = 168
Score = 120 (47.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVT 441
G KL+ V RT KV KGG+V ++A++ G+ G VGF K VP A+QK T
Sbjct: 12 GIQEKLVAVRRTAKVVKGGRVFGFSALVVAGDGDGKVGFGLGKAREVPSAIQKAT 66
>TIGR_CMR|CJE_1858 [details] [associations]
symbol:CJE_1858 "ribosomal protein S5" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006450 "regulation of translational fidelity" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000851
InterPro:IPR005324 InterPro:IPR005712 InterPro:IPR013810
Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881 InterPro:IPR014720
GO:GO:0006412 Gene3D:3.30.160.20 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 KO:K02988 GO:GO:0015935 eggNOG:COG0098
HOGENOM:HOG000072595 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 ProtClustDB:PRK00550
HAMAP:MF_01307_B RefSeq:YP_179828.1 ProteinModelPortal:Q5HSA7
SMR:Q5HSA7 STRING:Q5HSA7 GeneID:3232485 KEGG:cjr:CJE1858
PATRIC:20045548 OMA:YNASKIL BioCyc:CJEJ195099:GJC0-1897-MONOMER
Uniprot:Q5HSA7
Length = 147
Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 385 RKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
R+ F+ ++D+ R KV KGG+ ++TA++ GN G+VG K VP A++K
Sbjct: 6 REEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLVGVGYGKAKEVPDAIRK 60
>TIGR_CMR|CPS_0618 [details] [associations]
symbol:CPS_0618 "ribosomal protein S5" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000851 InterPro:IPR005324 InterPro:IPR005712
InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881
InterPro:IPR014720 GO:GO:0006412 Gene3D:3.30.160.20 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 KO:K02988 GO:GO:0015935 eggNOG:COG0098
HOGENOM:HOG000072595 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT HAMAP:MF_01307_B
RefSeq:YP_267368.1 ProteinModelPortal:Q488Z6 SMR:Q488Z6
STRING:Q488Z6 PRIDE:Q488Z6 GeneID:3519484 KEGG:cps:CPS_0618
PATRIC:21464563 BioCyc:CPSY167879:GI48-705-MONOMER Uniprot:Q488Z6
Length = 169
Score = 116 (45.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR KV KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 17 KLIAVNRVSKVVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 65
>UNIPROTKB|Q9KP01 [details] [associations]
symbol:rpsE "30S ribosomal protein S5" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000851 InterPro:IPR005324
InterPro:IPR005712 InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719
PROSITE:PS50881 InterPro:IPR014720 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 KO:K02988 GO:GO:0015935
eggNOG:COG0098 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT ProtClustDB:PRK00550
HAMAP:MF_01307_B PIR:E82057 RefSeq:NP_232207.1
ProteinModelPortal:Q9KP01 SMR:Q9KP01 PRIDE:Q9KP01 DNASU:2615596
GeneID:2615596 KEGG:vch:VC2579 PATRIC:20084184 Uniprot:Q9KP01
Length = 167
Score = 115 (45.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 379 KRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQ 438
K + + KLI VNR K KGG+++ +TA+ G+ +G VGF K VP A+Q
Sbjct: 3 KEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQ 62
Query: 439 K 439
K
Sbjct: 63 K 63
>TIGR_CMR|VC_2579 [details] [associations]
symbol:VC_2579 "ribosomal protein S5" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000851 InterPro:IPR005324 InterPro:IPR005712
InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881
InterPro:IPR014720 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 KO:K02988 GO:GO:0015935
eggNOG:COG0098 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT ProtClustDB:PRK00550
HAMAP:MF_01307_B PIR:E82057 RefSeq:NP_232207.1
ProteinModelPortal:Q9KP01 SMR:Q9KP01 PRIDE:Q9KP01 DNASU:2615596
GeneID:2615596 KEGG:vch:VC2579 PATRIC:20084184 Uniprot:Q9KP01
Length = 167
Score = 115 (45.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 379 KRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQ 438
K + + KLI VNR K KGG+++ +TA+ G+ +G VGF K VP A+Q
Sbjct: 3 KEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQ 62
Query: 439 K 439
K
Sbjct: 63 K 63
>TIGR_CMR|SO_0248 [details] [associations]
symbol:SO_0248 "ribosomal protein S5" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000851 InterPro:IPR005324 InterPro:IPR005712
InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881
InterPro:IPR014720 GO:GO:0006412 Gene3D:3.30.160.20 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 KO:K02988 GO:GO:0015935 eggNOG:COG0098
HOGENOM:HOG000072595 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT ProtClustDB:PRK00550
HAMAP:MF_01307_B RefSeq:NP_715888.1 ProteinModelPortal:P59124
SMR:P59124 GeneID:1168131 KEGG:son:SO_0248 PATRIC:23520189
Uniprot:P59124
Length = 167
Score = 114 (45.2 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR KV KGG++ +TA+ G+ +G VG+ K VP A+QK
Sbjct: 15 KLIAVNRVSKVVKGGRIFSFTALTVVGDGNGKVGYGYGKAREVPAAIQK 63
>UNIPROTKB|P0A7W1 [details] [associations]
symbol:rpsE "30S ribosomal subunit protein S5"
species:83333 "Escherichia coli K-12" [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000851 InterPro:IPR005324 InterPro:IPR005712
InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881
InterPro:IPR014720 EMBL:X01563 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
Gene3D:3.30.160.20 GO:GO:0046677 EMBL:U18997 GO:GO:0003735
GO:GO:0019843 PDB:3J00 PDBsum:3J00 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 PDB:3FIH
PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW KO:K02988
GO:GO:0015935 PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ PDB:1EG0
PDBsum:1EG0 eggNOG:COG0098 HOGENOM:HOG000072595 InterPro:IPR018192
PANTHER:PTHR13718 TIGRFAMs:TIGR01021 PROSITE:PS00585 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO
PDB:2VHP PDB:2WWL PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A
PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21
PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18
PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP
PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ
PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1
PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O
PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U
PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13
PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA
PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY
PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ
PDBsum:4GD2 OMA:HNVVKAT ProtClustDB:PRK00550 HAMAP:MF_01307_B
PIR:B65123 RefSeq:NP_417762.1 RefSeq:YP_492129.1
ProteinModelPortal:P0A7W1 SMR:P0A7W1 IntAct:P0A7W1 PaxDb:P0A7W1
PRIDE:P0A7W1 EnsemblBacteria:EBESCT00000004415
EnsemblBacteria:EBESCT00000014509 GeneID:12934414 GeneID:947795
KEGG:ecj:Y75_p3873 KEGG:eco:b3303 PATRIC:32122038 EchoBASE:EB0897
EcoGene:EG10904 BioCyc:EcoCyc:EG10904-MONOMER
BioCyc:ECOL316407:JW3265-MONOMER EvolutionaryTrace:P0A7W1
Genevestigator:P0A7W1 Uniprot:P0A7W1
Length = 167
Score = 112 (44.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 14 KLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 62
>TIGR_CMR|SPO_0502 [details] [associations]
symbol:SPO_0502 "ribosomal protein S5" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000851 InterPro:IPR005324 InterPro:IPR005712
InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719 PROSITE:PS50881
InterPro:IPR014720 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 Gene3D:3.30.160.20 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 KO:K02988 GO:GO:0015935 eggNOG:COG0098
HOGENOM:HOG000072595 InterPro:IPR018192 PANTHER:PTHR13718
TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT ProtClustDB:PRK00550
HAMAP:MF_01307_B RefSeq:YP_165764.1 ProteinModelPortal:Q5LW41
SMR:Q5LW41 GeneID:3195459 KEGG:sil:SPO0502 PATRIC:23374265
Uniprot:Q5LW41
Length = 190
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 368 LAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAK 427
+AE N ++ R F +L+ +NR K KGG+ + A++ G+ G VGF K
Sbjct: 1 MAERENRRGNRRDREEAAPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQKGRVGFGK 60
Query: 428 AKGPAVPIALQKVT 441
K VP A++K T
Sbjct: 61 GKAKEVPEAIRKAT 74
>TIGR_CMR|CHY_2292 [details] [associations]
symbol:CHY_2292 "ribosomal protein S5" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000851 InterPro:IPR005324
InterPro:IPR005712 InterPro:IPR013810 Pfam:PF00333 Pfam:PF03719
PROSITE:PS50881 InterPro:IPR014720 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 Gene3D:3.30.160.20
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 KO:K02988 GO:GO:0015935
eggNOG:COG0098 HOGENOM:HOG000072595 InterPro:IPR018192
PANTHER:PTHR13718 TIGRFAMs:TIGR01021 PROSITE:PS00585 OMA:HNVVKAT
ProtClustDB:PRK00550 HAMAP:MF_01307_B RefSeq:YP_361101.1
ProteinModelPortal:Q3A9T3 SMR:Q3A9T3 STRING:Q3A9T3 GeneID:3727429
KEGG:chy:CHY_2292 PATRIC:21277655
BioCyc:CHYD246194:GJCN-2291-MONOMER Uniprot:Q3A9T3
Length = 167
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
K+I +NRT KV KGG+ ++A++ G+ G VG K P VP A++K
Sbjct: 14 KVIAINRTAKVVKGGRRFSFSALVVVGDQKGHVGVGLGKAPEVPDAIRK 62
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 442 365 0.00084 117 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 606 (64 KB)
Total size of DFA: 235 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.63u 0.14s 31.77t Elapsed: 00:00:01
Total cpu time: 31.63u 0.14s 31.77t Elapsed: 00:00:01
Start: Tue May 21 03:16:20 2013 End: Tue May 21 03:16:21 2013