BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013474
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1R0F8|RS5_CHRSD 30S ribosomal protein S5 OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsE PE=3 SV=1
Length = 166
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 385 RKGFDV--KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
+KG D+ KL+ VNR KV KGG++ +TA+ G+ G VGF + K VP+A+QK
Sbjct: 6 QKGGDLQEKLVQVNRVAKVVKGGRIFGFTALTVVGDGSGRVGFGRGKAREVPVAIQK 62
>sp|Q2S929|RS5_HAHCH 30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396)
GN=rpsE PE=3 SV=1
Length = 167
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KL+ VNR KV KGG++ +TA+ G+ +G VGF + K VP+A+QK
Sbjct: 15 KLVQVNRVAKVVKGGRIFGFTALTVVGDGNGKVGFGRGKAREVPVAIQK 63
>sp|A1TYL4|RS5_MARAV 30S ribosomal protein S5 OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=rpsE PE=3 SV=1
Length = 166
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KL+ VNR KV KGG++ +TA+ G+ G VGF + K VP+A+QK
Sbjct: 14 KLVQVNRVAKVVKGGRIFAFTALTVVGDGKGRVGFGRGKAREVPVAIQK 62
>sp|Q5WZJ5|RS5_LEGPL 30S ribosomal protein S5 OS=Legionella pneumophila (strain Lens)
GN=rpsE PE=3 SV=1
Length = 168
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ V RT KV KGG+V + ++ G+ G VGF + K VPIA+QK
Sbjct: 11 GYQEKLVSVTRTAKVVKGGRVFGFAVLVVVGDGKGKVGFGRGKAREVPIAIQK 63
>sp|Q5ZYM6|RS5_LEGPH 30S ribosomal protein S5 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=rpsE PE=3 SV=1
Length = 168
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ V RT KV KGG+V + ++ G+ G VGF + K VPIA+QK
Sbjct: 11 GYQEKLVSVTRTAKVVKGGRVFGFAVLVVVGDGKGKVGFGRGKAREVPIAIQK 63
>sp|A5IHP7|RS5_LEGPC 30S ribosomal protein S5 OS=Legionella pneumophila (strain Corby)
GN=rpsE PE=3 SV=1
Length = 168
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ V RT KV KGG+V + ++ G+ G VGF + K VPIA+QK
Sbjct: 11 GYQEKLVSVTRTAKVVKGGRVFGFAVLVVVGDGKGKVGFGRGKAREVPIAIQK 63
>sp|Q5X842|RS5_LEGPA 30S ribosomal protein S5 OS=Legionella pneumophila (strain Paris)
GN=rpsE PE=3 SV=1
Length = 168
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ V RT KV KGG+V + ++ G+ G VGF + K VPIA+QK
Sbjct: 11 GYQEKLVSVTRTAKVVKGGRVFGFAVLVVVGDGKGKVGFGRGKAREVPIAIQK 63
>sp|A7H0Z5|RS5_CAMC5 30S ribosomal protein S5 OS=Campylobacter curvus (strain 525.92)
GN=rpsE PE=3 SV=1
Length = 147
Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 385 RKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
R+ F+ ++D+ R KV KGG+ ++TA++ GN +G+VGF K VP A++K
Sbjct: 6 REEFEEVIVDIGRVTKVVKGGRRFRFTALVVVGNRNGLVGFGYGKAKEVPDAMRK 60
>sp|A7ZFZ5|RS5_CAMC1 30S ribosomal protein S5 OS=Campylobacter concisus (strain 13826)
GN=rpsE PE=3 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 385 RKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
R+ F+ ++D+ R KV KGG+ ++TA++ GN +G+VGF K VP A++K
Sbjct: 6 REEFEEVIVDIGRVTKVVKGGRRFRFTALVVVGNRNGLVGFGYGKAKEVPDAMRK 60
>sp|A1T0C5|RS5_PSYIN 30S ribosomal protein S5 OS=Psychromonas ingrahamii (strain 37)
GN=rpsE PE=3 SV=1
Length = 167
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR KV KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 15 KLIAVNRVAKVVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 63
>sp|Q0VSI6|RS5_ALCBS 30S ribosomal protein S5 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rpsE PE=3 SV=1
Length = 167
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G KL+ VNR KV KGG++ +TA+ G+ G VGF + K VP A+QK
Sbjct: 11 GLQEKLVQVNRVAKVVKGGRIFGFTALTVVGDGKGKVGFGRGKAREVPAAIQK 63
>sp|Q057C1|RS5_BUCCC 30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Cinara cedri
(strain Cc) GN=rpsE PE=3 SV=1
Length = 164
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ GN G VGF K VP A+QK
Sbjct: 14 KLISVNRVSKTVKGGRIFSFTALTVVGNNQGKVGFGYGKAREVPSAIQK 62
>sp|Q8K966|RS5_BUCAP 30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsE PE=3 SV=1
Length = 167
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ GN G VGF K VP A+QK
Sbjct: 15 KLITVNRVSKTVKGGRIFSFTALTVVGNGEGRVGFGYGKAREVPAAIQK 63
>sp|Q63Q28|RS5_BURPS 30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|A3NEG2|RS5_BURP6 30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 668)
GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|Q3JMT0|RS5_BURP1 30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|A3P096|RS5_BURP0 30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain
1106a) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|A1V886|RS5_BURMS 30S ribosomal protein S5 OS=Burkholderia mallei (strain SAVP1)
GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|Q62GM2|RS5_BURMA 30S ribosomal protein S5 OS=Burkholderia mallei (strain ATCC 23344)
GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|A2S7J3|RS5_BURM9 30S ribosomal protein S5 OS=Burkholderia mallei (strain NCTC 10229)
GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|A3MRX1|RS5_BURM7 30S ribosomal protein S5 OS=Burkholderia mallei (strain NCTC 10247)
GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|A9ADL0|RS5_BURM1 30S ribosomal protein S5 OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|Q89A82|RS5_BUCBP 30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsE PE=3 SV=2
Length = 171
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ ++A+ G+ HG VGF K VP A+QK
Sbjct: 15 KLISVNRVSKTVKGGRIFSFSALTVVGDGHGKVGFGYGKAREVPSAIQK 63
>sp|Q2SU44|RS5_BURTA 30S ribosomal protein S5 OS=Burkholderia thailandensis (strain E264
/ ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsE PE=3
SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|B2JI48|RS5_BURP8 30S ribosomal protein S5 OS=Burkholderia phymatum (strain DSM 17167
/ STM815) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|B2T734|RS5_BURPP 30S ribosomal protein S5 OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G VG K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQK 68
>sp|Q46WG1|RS5_CUPPJ 30S ribosomal protein S5 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|Q488Z6|RS5_COLP3 30S ribosomal protein S5 OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=rpsE PE=3 SV=1
Length = 169
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR KV KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 17 KLIAVNRVSKVVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 65
>sp|Q7VQD1|RS5_BLOFL 30S ribosomal protein S5 OS=Blochmannia floridanus GN=rpsE PE=3
SV=1
Length = 177
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG+V + A+ GN +G VGF K VP A+QK
Sbjct: 17 KLITVNRVSKTVKGGRVFSFAALTVVGNVNGRVGFGYGKAREVPSAIQK 65
>sp|P57574|RS5_BUCAI 30S ribosomal protein S5 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsE PE=3 SV=1
Length = 167
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ GN G VGF K VP A+QK
Sbjct: 15 KLITVNRVSKTVKGGRIFSFTALTVVGNGDGKVGFGYGKAREVPAAIQK 63
>sp|Q30TU7|RS5_SULDN 30S ribosomal protein S5 OS=Sulfurimonas denitrificans (strain ATCC
33889 / DSM 1251) GN=rpsE PE=3 SV=1
Length = 146
Score = 49.3 bits (116), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 385 RKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
R+ F+ ++++ R KV KGG+ ++TA++ GN G +GF K VP A++K
Sbjct: 5 REDFEESIVNIGRVTKVVKGGRRFRFTALVVVGNKKGTIGFGAGKAKEVPDAIKK 59
>sp|Q1LI54|RS5_RALME 30S ribosomal protein S5 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|B3R7F1|RS5_CUPTR 30S ribosomal protein S5 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|Q0K636|RS5_CUPNH 30S ribosomal protein S5 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rpsE PE=3 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|Q13TI7|RS5_BURXL 30S ribosomal protein S5 OS=Burkholderia xenovorans (strain LB400)
GN=rpsE PE=3 SV=1
Length = 172
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|B4RT45|RS5_ALTMD 30S ribosomal protein S5 OS=Alteromonas macleodii (strain DSM 17117
/ Deep ecotype) GN=rpsE PE=3 SV=1
Length = 166
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR KV KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 14 KLIAVNRVSKVVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 62
>sp|Q39KF0|RS5_BURS3 30S ribosomal protein S5 OS=Burkholderia sp. (strain 383) GN=rpsE
PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|B4E5D7|RS5_BURCJ 30S ribosomal protein S5 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|A4JAQ7|RS5_BURVG 30S ribosomal protein S5 OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|Q0BJ29|RS5_BURCM 30S ribosomal protein S5 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|A0K3P2|RS5_BURCH 30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|B1JU39|RS5_BURCC 30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain MC0-3)
GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|Q1BRW5|RS5_BURCA 30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|B1YRP6|RS5_BURA4 30S ribosomal protein S5 OS=Burkholderia ambifaria (strain MC40-6)
GN=rpsE PE=3 SV=1
Length = 172
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G K+I VNR KV KGG+++ + A+ G+ G +G K K VP+A+QK
Sbjct: 16 GLREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQK 68
>sp|Q5QXW2|RS5_IDILO 30S ribosomal protein S5 OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=rpsE PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR KV KGG++ +TA+ G+ G VGF K VP A+QK
Sbjct: 14 KLITVNRVAKVVKGGRIFSFTALTVVGDGKGKVGFGYGKAREVPAAIQK 62
>sp|Q3K605|RS5_PSEPF 30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rpsE PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QK
Sbjct: 11 GYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQK 63
>sp|C1DKN0|RS5_AZOVD 30S ribosomal protein S5 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rpsE PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QK
Sbjct: 11 GYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQK 63
>sp|A3N374|RS5_ACTP2 30S ribosomal protein S5 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rpsE PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG+++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 14 KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 62
>sp|Q9HWF2|RS5_PSEAE 30S ribosomal protein S5 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsE PE=3
SV=1
Length = 166
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QK
Sbjct: 11 GYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFGRGKAREVPAAIQK 63
>sp|Q02T63|RS5_PSEAB 30S ribosomal protein S5 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rpsE PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QK
Sbjct: 11 GYIEKLVQVNRVAKTVKGGRIFAFTALTVVGDGKGRVGFGRGKAREVPAAIQK 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,616,307
Number of Sequences: 539616
Number of extensions: 8428965
Number of successful extensions: 38283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 763
Number of HSP's that attempted gapping in prelim test: 35274
Number of HSP's gapped (non-prelim): 3226
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)