Query 013474
Match_columns 442
No_of_seqs 189 out of 657
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 11:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_C Guanine nucleotide-bind 100.0 1.3E-32 4.6E-37 260.4 5.8 99 327-442 32-130 (254)
2 3j20_F 30S ribosomal protein S 100.0 1.9E-32 6.4E-37 257.2 5.9 104 321-441 7-114 (236)
3 2xzm_E Ribosomal protein S5 co 100.0 1.4E-31 5E-36 257.7 4.6 108 327-442 24-131 (296)
4 3iz6_E 40S ribosomal protein S 100.0 2.8E-32 9.7E-37 260.4 -14.1 100 326-442 40-139 (274)
5 3bbn_E Ribosomal protein S5; s 99.9 9.7E-27 3.3E-31 225.2 3.5 140 275-442 67-206 (308)
6 3r8n_E 30S ribosomal protein S 99.8 3.7E-20 1.2E-24 163.6 4.8 56 387-442 1-56 (150)
7 2vqe_E 30S ribosomal protein S 99.8 6E-20 2.1E-24 164.2 5.6 57 386-442 4-60 (162)
8 1pkp_A Ribosomal protein S5; 2 99.8 5.7E-20 1.9E-24 162.5 4.4 57 386-442 9-65 (150)
9 3i1m_E 30S ribosomal protein S 99.8 1.1E-19 3.6E-24 163.2 5.7 56 387-442 10-65 (167)
10 1aie_A P53; oligomer, DNA; 1.5 30.3 24 0.00082 24.6 1.7 20 251-270 8-27 (31)
11 2dix_A Interferon-inducible do 29.6 52 0.0018 25.6 3.8 27 406-435 37-63 (84)
12 3adl_A RISC-loading complex su 23.0 45 0.0015 26.4 2.4 25 406-433 45-69 (88)
13 1t4n_A Ribonuclease III; DSRBD 21.8 43 0.0015 27.5 2.1 28 405-433 33-60 (94)
14 1di2_A XLRBPA, double stranded 21.7 49 0.0017 24.4 2.2 26 406-434 30-55 (69)
15 4fp9_B Mterf domain-containing 21.7 30 0.001 33.5 1.3 33 109-142 274-306 (335)
16 2k75_A Uncharacterized protein 21.6 1.2E+02 0.0042 24.4 4.7 37 387-425 17-53 (106)
17 3vte_A Tetrahydrocannabinolic 20.2 35 0.0012 34.7 1.5 24 265-293 488-511 (518)
18 1olg_A Tumor suppressor P53 (o 20.1 47 0.0016 24.5 1.7 22 251-272 15-36 (42)
No 1
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Probab=99.97 E-value=1.3e-32 Score=260.39 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=94.2
Q ss_pred hhhhHHHHHHHhHhHhhhhhhhhhHHhhccCCccchHHHHHHHHHhhhhhhhcccccccCCcceeeeEeecceeeccCCe
Q 013474 327 ERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQ 406 (442)
Q Consensus 327 Ekd~i~itKLg~ivKk~EGKI~sLdeiF~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~LkEeVLdInRVQKmTKgGR 406 (442)
+++|+|+||||+|||++ ||+|||++|..++||+|+||||+| +++|+++||+|+||||||++||
T Consensus 32 ~~~W~P~TklG~lVk~~--kiksleei~~~slpikE~eiiD~~---------------l~~Lke~Vl~I~rVqK~tkgGr 94 (254)
T 3u5c_C 32 EKGWVPVTKLGRLVKAG--KITTIEEIFLHSLPVKEFQIIDTL---------------LPGLQDEVMNIKPVQKQTRAGQ 94 (254)
T ss_dssp --CCCCCSHHHHHHHTT--CCCCHHHHHHTTCCCCCHHHHHHH---------------CCCCBCCEEEEEEEEEEETTEE
T ss_pred ccceeecccccchhhcC--ccccHHHHHHcCCCccchHHHHHH---------------HHhhhhhEEEEeeeEEEecCCc
Confidence 46799999999999966 999999999999999999999999 6999999999999999999999
Q ss_pred eEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 407 VVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 407 RtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
++||+|||||||+||+||||+|||+||++||+||++
T Consensus 95 r~rF~AlVVVGD~nG~VGlG~gkakEV~~AIrkAi~ 130 (254)
T 3u5c_C 95 RTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGII 130 (254)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCceeecccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999973
No 2
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=1.9e-32 Score=257.20 Aligned_cols=104 Identities=23% Similarity=0.372 Sum_probs=98.5
Q ss_pred HhhhhhhhhhHHHHHHHhHhHhhhhhhhhhHHhhccCCccchHHHHHHHHHhhhhhhhcccccccCCcc----eeeeEee
Q 013474 321 EFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFD----VKLIDVN 396 (442)
Q Consensus 321 Ef~d~kEkd~i~itKLg~ivKk~EGKI~sLdeiF~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~Lk----EeVLdIn 396 (442)
|..--++++|+|+||||+|||++ ||+||+++|..++||+|+||||+| +++|+ ++||+|+
T Consensus 7 ~~~~~~~~~w~p~tklG~lVk~~--ki~sleei~~~~lpike~eiid~~---------------l~~Lk~~~~e~Vl~I~ 69 (236)
T 3j20_F 7 EYAKRVLDEWEPKTKLGMMVKEG--QITDIHEIFRRGYQIKEPEIIDVL---------------LPEVNARENQEVLDIA 69 (236)
T ss_dssp HHHHHHTTSCCCSSHHHHHHHTT--CSCCHHHHHHHTCCCCCSHHHHHH---------------CCSSSSCCEEEEEEEC
T ss_pred HHHHhhccceeccccccceeecC--ccccHHHHHhcCCCcccHHHHHHH---------------HHhhcccCCcEEEEEe
Confidence 45556788999999999999966 999999999999999999999999 68888 9999999
Q ss_pred cceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhc
Q 013474 397 RTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVT 441 (442)
Q Consensus 397 RVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAI 441 (442)
||||||++||++||+|||||||+||+||||+|||+||++||+||+
T Consensus 70 rV~K~tkgGrr~rF~AlVvVGD~nG~VGlG~gKakEV~~AIrkAi 114 (236)
T 3j20_F 70 LTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAI 114 (236)
T ss_dssp CCEEEETTEEEECEEEEEEEEETTTEEEEEEEEESSHHHHHHHHH
T ss_pred eeEEeecCCcEEEEEEEEEEECCCCcCccccccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997
No 3
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Probab=99.97 E-value=1.4e-31 Score=257.68 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=94.3
Q ss_pred hhhhHHHHHHHhHhHhhhhhhhhhHHhhccCCccchHHHHHHHHHhhhhhhhcccccccCCcceeeeEeecceeeccCCe
Q 013474 327 ERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQ 406 (442)
Q Consensus 327 Ekd~i~itKLg~ivKk~EGKI~sLdeiF~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~LkEeVLdInRVQKmTKgGR 406 (442)
+++|+|+||||+|||++ ||+|||+||..++||+|+||||+|- .+.++.+ ...+|+++||+|+||||||++||
T Consensus 24 ~~~W~P~TklGrlVk~g--kI~sleei~~~slpIkE~eIiD~ll-~~~~~~~-----~~~~L~ekVv~I~rVqKvTkgGR 95 (296)
T 2xzm_E 24 KNDWQPQTKLGRLVKYG--KISSLDEIFKYSIPIKEPEIIDHFY-PKNKDVQ-----AEHKLMEEVLQITPVQKQTQAGQ 95 (296)
T ss_dssp CCCCCCCSSHHHHHHTT--CSCCHHHHHHTTCCCCCSHHHHHHS-CTTCCSC-----CTTCCEEEEEEEEEEEEEETTEE
T ss_pred CccccccccccccccCC--ccCCHHHHHhcCCCcCchhhhHHHh-ccCcccc-----hhhhheeEEEEEEeEEEEecCCc
Confidence 45799999999999955 9999999999999999999999991 1100000 11249999999999999999999
Q ss_pred eEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 407 VVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 407 RtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
++||+|||||||+||+||||+|||+||++||+||++
T Consensus 96 r~rF~AlVVVGD~nG~VGlG~GKAkEV~~AIrKAi~ 131 (296)
T 2xzm_E 96 RTRFKGFVVVGDSNGHIGLGWKVAKEVQGAIKGAIT 131 (296)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCccCccceeechHHHHHHHHHHH
Confidence 999999999999999999999999999999999973
No 4
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=99.95 E-value=2.8e-32 Score=260.40 Aligned_cols=100 Identities=17% Similarity=0.306 Sum_probs=95.9
Q ss_pred hhhhhHHHHHHHhHhHhhhhhhhhhHHhhccCCccchHHHHHHHHHhhhhhhhcccccccCCcceeeeEeecceeeccCC
Q 013474 326 KERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGG 405 (442)
Q Consensus 326 kEkd~i~itKLg~ivKk~EGKI~sLdeiF~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~LkEeVLdInRVQKmTKgG 405 (442)
++++|+|+||||+|||++ ||+|||++|..++||+|+||||+| +++|+++||+|+||||||++|
T Consensus 40 ~~~eW~P~TkLG~lVk~~--kiksleei~~~slpIkE~eIiD~~---------------l~~Lke~Vl~I~rVqK~tkgG 102 (274)
T 3iz6_E 40 EEEKWVPVTKLGRLVKEG--RFSKIEEIYLHSLPVKEHQIVETL---------------VPGLKDEVMKITPVQKQTRAG 102 (274)
T ss_dssp HHHHHHHHHHHTCCCSSC--TTHHHHHHHTTHHHHHHHTCCSSS---------------SHHHHHHHHCCSHHHHHHTTT
T ss_pred cccceeecccccceeccC--ccccHHHHHHcCCCccchHHHHHH---------------HHhhhhcEEEEeeeEeEecCC
Confidence 457799999999999966 999999999999999999999999 689999999999999999999
Q ss_pred eeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 406 QVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 406 RRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
|++||+|||||||+||+||||+|||+||++||+||++
T Consensus 103 rr~rF~AlVVVGD~nG~VGlG~gKakEV~~AIrkAi~ 139 (274)
T 3iz6_E 103 QRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAII 139 (274)
T ss_dssp CSSSCSSCCSHHHHCCCCEEEEEEECCEEECSSCEEE
T ss_pred cEEEEEEEEEecCCCCceeccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999974
No 5
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.92 E-value=9.7e-27 Score=225.22 Aligned_cols=140 Identities=22% Similarity=0.320 Sum_probs=53.4
Q ss_pred cCCCCCCCccceeeccCCCChhhhhhhhhhHHHhhhcCCCCCCChHHhhhhhhhhhHHHHHHHhHhHhhhhhhhhhHHhh
Q 013474 275 YDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTF 354 (442)
Q Consensus 275 ydp~npanyg~i~~~q~g~~~d~~~~a~~~~ek~~~~g~~d~~~eeEf~d~kEkd~i~itKLg~ivKk~EGKI~sLdeiF 354 (442)
||-.||-. -|--+-.||++|.|...-|++|-+..+ |+-..-.++..|+.|.+++|||++||.++.|+. +++
T Consensus 67 ~~~~~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~~e----~e~~~~~e~l~ergwsg~TklGrlVk~~kik~~---~~~ 137 (308)
T 3bbn_E 67 FEQDNPDE--EITFDPPEKPEGYIPPRAVDEPPFESE----EEIALAYEELYGAAYSGESLLGNDVYAMDSKIK---KAT 137 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCCccc--ceEecCCCCccccCCCcCcccccccCH----HHHHHHHHHhhccCcccccccCccCCCccccch---hhh
Confidence 55556653 233456789999999999998855432 233334456779999999999999999855543 566
Q ss_pred ccCCccchHHHHHHHHHhhhhhhhcccccccCCcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHH
Q 013474 355 GKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVP 434 (442)
Q Consensus 355 ~k~~pIlE~EIVD~LeerN~Ltekkr~p~~lp~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVa 434 (442)
..+++|+|.||+|. |.++||+|+||||||++||++||+|||||||+||+||||+|||+||+
T Consensus 138 ~fsl~ike~ei~d~-------------------f~ekVv~I~RV~KvTkgGRr~rF~AlVVVGDgnG~VGlG~GKAkEV~ 198 (308)
T 3bbn_E 138 GFGSKSKKEKIRDG-------------------FEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVV 198 (308)
T ss_dssp -------------C-------------------CEEEEEEEECCEEEETTEEEECCEEEEEEECSSSEEEEEEEECSSHH
T ss_pred cccccccccccccc-------------------ceeeEEEEeeeEEEecCCcEEEEEEEEEEeCCCceEeeeeeecchHH
Confidence 76788999887653 55899999999999999999999999999999999999999999999
Q ss_pred HHhhhhcC
Q 013474 435 IALQKVTW 442 (442)
Q Consensus 435 tAIrKAIW 442 (442)
+||+||++
T Consensus 199 ~AIrKAi~ 206 (308)
T 3bbn_E 199 SAVQKAAV 206 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 6
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=99.79 E-value=3.7e-20 Score=163.59 Aligned_cols=56 Identities=41% Similarity=0.625 Sum_probs=54.3
Q ss_pred CcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 387 ~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
+|+++||+|+||||||++||++||+|||||||+||+||||+|||+||++||+||++
T Consensus 1 ~l~e~vv~i~rV~K~tk~Gr~~~F~alVvvGd~nG~vG~G~gka~ev~~Ai~kA~~ 56 (150)
T 3r8n_E 1 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAME 56 (150)
T ss_dssp CCCEEEEEEEECCCCCSSSCCCCEEEEEEEECSSSCEEEECCEESSHHHHHHHHHH
T ss_pred CceEEEEEEeeeEEEecCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999974
No 7
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=99.79 E-value=6e-20 Score=164.17 Aligned_cols=57 Identities=33% Similarity=0.681 Sum_probs=54.8
Q ss_pred CCcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 386 KGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 386 p~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
.+|+++||+|+||||||++||++||+|||||||+||+||||+|||+||++||+||++
T Consensus 4 ~~l~e~vv~I~rV~K~tkgGr~~~F~alVvvGd~nG~vG~G~gKa~ev~~AIrkA~~ 60 (162)
T 2vqe_E 4 TDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGY 60 (162)
T ss_dssp -CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred cCceeEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEecceEecccHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999974
No 8
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=99.78 E-value=5.7e-20 Score=162.53 Aligned_cols=57 Identities=33% Similarity=0.631 Sum_probs=55.3
Q ss_pred CCcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 386 KGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 386 p~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
++|+++||+|+||||||++||++||+|||||||+||+||||+|||+||++||+||++
T Consensus 9 ~~l~e~vv~i~rV~K~tk~Gr~~~F~alVvVGd~nG~vG~G~gka~ev~~Ai~kA~~ 65 (150)
T 1pkp_A 9 LELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIE 65 (150)
T ss_dssp SCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCceEEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEeeeEEecchHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999974
No 9
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=99.78 E-value=1.1e-19 Score=163.24 Aligned_cols=56 Identities=41% Similarity=0.625 Sum_probs=54.5
Q ss_pred CcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceeeeeccCCcHHHHhhhhcC
Q 013474 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442 (442)
Q Consensus 387 ~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGlGvGKAKEVatAIrKAIW 442 (442)
+|+++||+|+||||||++||++||+|||||||+||+||||+|||+||++||+||++
T Consensus 10 ~l~e~vv~I~rV~K~tk~Gr~~~F~AlVvvGd~nG~VG~G~gka~Ev~~AI~kAi~ 65 (167)
T 3i1m_E 10 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAME 65 (167)
T ss_dssp CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHH
T ss_pred ceeEEEEEEEeeEEEEcCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999974
No 10
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=30.34 E-value=24 Score=24.58 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=18.4
Q ss_pred hccchhHHHHHHHhHhhhhh
Q 013474 251 EGKDKFMLQQKLNRAMRLVE 270 (442)
Q Consensus 251 egkd~f~l~~klnra~rl~e 270 (442)
-|+++|=+..|||-|+-|++
T Consensus 8 rGRe~yEml~ki~d~LEL~e 27 (31)
T 1aie_A 8 RGRERFEMFRELNEALELKD 27 (31)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999986
No 11
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=29.56 E-value=52 Score=25.59 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=21.0
Q ss_pred eeEEEEEEEEEecCCCceeeeeccCCcHHH
Q 013474 406 QVVKYTAMLACGNYHGVVGFAKAKGPAVPI 435 (442)
Q Consensus 406 RRtRFrALVVVGNgNG~VGlGvGKAKEVat 435 (442)
....|.+-|.|++ .+|.|.|+++-.+.
T Consensus 37 h~~~F~~~v~v~~---~~~~G~G~SKK~Ae 63 (84)
T 2dix_A 37 HVPTFTFRVTVGD---ITCTGEGTSKKLAK 63 (84)
T ss_dssp SSCEEEEEEEETT---EEEEECSSCTTHHH
T ss_pred CCCeEEEEEEECC---EEEEeeeCCHHHHH
Confidence 4457999999974 88999999986544
No 12
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=22.98 E-value=45 Score=26.41 Aligned_cols=25 Identities=4% Similarity=0.111 Sum_probs=18.5
Q ss_pred eeEEEEEEEEEecCCCceeeeeccCCcH
Q 013474 406 QVVKYTAMLACGNYHGVVGFAKAKGPAV 433 (442)
Q Consensus 406 RRtRFrALVVVGNgNG~VGlGvGKAKEV 433 (442)
....|.+-|.|++ .+|.|.|+++-.
T Consensus 45 H~~~F~~~v~v~g---~~~~G~G~SKK~ 69 (88)
T 3adl_A 45 HRKEFTMTCRVER---FIEIGSGTSKKL 69 (88)
T ss_dssp TSCEEEEEEEETT---EEEEEEESSHHH
T ss_pred CCCeEEEEEEECC---EEEEEeeCCHHH
Confidence 4457999999985 378888877753
No 13
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=21.79 E-value=43 Score=27.52 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=21.0
Q ss_pred CeeEEEEEEEEEecCCCceeeeeccCCcH
Q 013474 405 GQVVKYTAMLACGNYHGVVGFAKAKGPAV 433 (442)
Q Consensus 405 GRRtRFrALVVVGNgNG~VGlGvGKAKEV 433 (442)
.....|.|-|.|++ .+.+|-|.|+++--
T Consensus 33 dH~k~F~v~v~i~~-~~~~g~G~G~SKK~ 60 (94)
T 1t4n_A 33 AVDPNSIVECRVGD-GTVLGTGVGRNIKI 60 (94)
T ss_dssp SSCCSEEEEEECSS-SCEEEEEEESSHHH
T ss_pred CCCCeEEEEEEECC-EEEEEEEEeCCHHH
Confidence 34568999999986 22789999988753
No 14
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=21.69 E-value=49 Score=24.42 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=18.7
Q ss_pred eeEEEEEEEEEecCCCceeeeeccCCcHH
Q 013474 406 QVVKYTAMLACGNYHGVVGFAKAKGPAVP 434 (442)
Q Consensus 406 RRtRFrALVVVGNgNG~VGlGvGKAKEVa 434 (442)
....|.+-|.|++ .+|-|.|+++-.+
T Consensus 30 h~~~F~~~v~v~~---~~~~G~G~sKK~A 55 (69)
T 1di2_A 30 HKREFTITCRVET---FVETGSGTSKQVA 55 (69)
T ss_dssp GGCEEEEEEEETT---EEEEEEESSHHHH
T ss_pred CCCeEEEEEEECC---EEEEeecCCHHHH
Confidence 4457999999975 2788888777543
No 15
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=21.65 E-value=30 Score=33.55 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=3.9
Q ss_pred HHHHHHHHHhHHHHHHHHcCCCCcCCCccccccc
Q 013474 109 LLAEVEREKGREREARKRQGLDTKDIDQEDEEDY 142 (442)
Q Consensus 109 ll~evere~~rer~~r~r~g~d~~d~d~e~eedy 142 (442)
|-.|.| +..+..++-++.|||...+|+.+.+||
T Consensus 274 ~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (335)
T 4fp9_B 274 LAREEE-ESESSTSDDKRASLDEDEDDDDEEDND 306 (335)
T ss_dssp HHHHHH-CC-------------------------
T ss_pred HHhhhh-cccccchhhhhhccccccccccccccc
Confidence 335555 445666677899999766666655555
No 16
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.55 E-value=1.2e+02 Score=24.35 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=28.2
Q ss_pred CcceeeeEeecceeeccCCeeEEEEEEEEEecCCCceee
Q 013474 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGF 425 (442)
Q Consensus 387 ~LkEeVLdInRVQKmTKgGRRtRFrALVVVGNgNG~VGl 425 (442)
++.-+|+.+.... .|+.|+..+|.. +++||.-|.|-+
T Consensus 17 ~v~~~V~~~~~~~-~~k~G~~~~v~~-~~l~DeTG~I~~ 53 (106)
T 2k75_A 17 SVIGKITGIHKKE-YESDGTTKSVYQ-GYIEDDTARIRI 53 (106)
T ss_dssp EEEEEEEEEEEEE-EEETTEEEEEEE-EEEECSSCEEEE
T ss_pred EEEEEEEEccccc-cccCCCeeEEEE-EEEEcCCCeEEE
Confidence 5667888888776 788887656655 788999998765
No 17
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=20.21 E-value=35 Score=34.70 Aligned_cols=24 Identities=50% Similarity=0.610 Sum_probs=18.8
Q ss_pred HhhhhhhhhccCCCCCCCccceeeccCCC
Q 013474 265 AMRLVEWKEVYDPNNPTNYGVIRHEQAGP 293 (442)
Q Consensus 265 a~rl~e~keaydp~npanyg~i~~~q~g~ 293 (442)
-=||++-|..|||+| |++|.|.=|
T Consensus 488 ~~RL~~vK~~yDP~n-----~F~~~QsI~ 511 (518)
T 3vte_A 488 FNRLVKVKTKVDPNN-----FFRNEQSIP 511 (518)
T ss_dssp HHHHHHHHHHHCTTC-----CSCCTTCCC
T ss_pred HHHHHHHHhhcCchh-----cccCCCCCC
Confidence 358999999999998 667777444
No 18
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=20.11 E-value=47 Score=24.50 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.5
Q ss_pred hccchhHHHHHHHhHhhhhhhh
Q 013474 251 EGKDKFMLQQKLNRAMRLVEWK 272 (442)
Q Consensus 251 egkd~f~l~~klnra~rl~e~k 272 (442)
-|+++|=+..|||-|+-|++--
T Consensus 15 rGRe~yEml~ki~esLEL~e~~ 36 (42)
T 1olg_A 15 RGRERFEMFRELNEALELKDAQ 36 (42)
T ss_dssp ESHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHhcc
Confidence 4899999999999999998754
Done!