RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013474
(442 letters)
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 308
Score = 57.6 bits (139), Expect = 2e-09
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 322 FDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRR 381
D+ + E + ++L + G ++ +I+ + K ++
Sbjct: 93 VDEPPFESE---EEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGS----KSKK 145
Query: 382 PLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
R GF+ ++ V R KV KGG+ +++ A++ G+ G VG K V A+QK
Sbjct: 146 EKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQK 203
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_E 3fih_E* 3iy8_E 2wwl_E 3oar_E 3oaq_E
3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E
2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E ...
Length = 150
Score = 55.2 bits (134), Expect = 2e-09
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 5 KLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 53
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP:
d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Length = 150
Score = 55.2 bits (134), Expect = 2e-09
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
+++ VNR KV KGG+ ++++A++ G+ +G VGF K VP A++K
Sbjct: 14 RVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRK 62
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E
1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E*
1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E*
1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Length = 162
Score = 55.2 bits (134), Expect = 2e-09
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
K+I + RT ++ GG+ ++ A++ G+ G VG K P VP+A+QK
Sbjct: 9 KMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQK 57
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E
3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E
3sfs_E* 3uoq_E*
Length = 167
Score = 54.9 bits (133), Expect = 3e-09
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 391 KLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 14 KLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 49/300 (16%), Positives = 90/300 (30%), Gaps = 91/300 (30%)
Query: 171 DSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNK--IDK-FE 227
D ++ E ++ +D + VF+ F NF + D ++K ID
Sbjct: 8 DFETGEHQYQY-KDIL----SVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 228 QKHFPLRHEYRVIGELMNRLKEAEGKDKFM---LQQKLN------------RAMRLVEWK 272
K + R+ L K+ E KF+ L+ +M +
Sbjct: 57 SKD-AVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 273 EVYDP--NNP---TNYGVIRHEQAGPNVDAVENA--EMDEEKRL-LQG--GV-------- 314
E D N+ Y V R + + A E+ K + + G G
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQP----YLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 315 ---DDDDEEEFDD--------MKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEE 363
+ + D + +LE L L + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----------LLYQIDPNWTSRSD 218
Query: 364 EIRDLAEERNALTEKKRRPLYRKGF--------DV---KLIDV-NRTCKV---TKGGQVV 408
++ +++ + RR L K + +V K + N +CK+ T+ QV
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Score = 39.8 bits (92), Expect = 0.002
Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 45/164 (27%)
Query: 299 ENAEMDEEKR-----LLQGGVDDDDEEEFDDM-------KERDDILLE--------RL-- 336
E E + + VD+ D ++ DM +E D I++ RL
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 337 -------NAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEK---KRRPLYRK 386
+ K +EE L +++ F L I+ + + +T +R LY
Sbjct: 70 TLLSKQEEMVQKFVEEVL-RINYKF------LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 387 GFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNY---HGVVGFAK 427
+V+R K Q + L GV+G K
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGK 163
Score = 39.5 bits (91), Expect = 0.003
Identities = 33/274 (12%), Positives = 72/274 (26%), Gaps = 98/274 (35%)
Query: 123 ARKRQGLDT----KDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEE----PTDSD- 173
R GL T K ++ + + + LE + +++ P +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRK-----MFDRLSVFPPSAHI 387
Query: 174 ------------SDEDDERF-----SRDAVNKR-----------FQVFQKKFKR----HK 201
D V K+ + + K + H+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 202 ELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHE----YRVIGELMNRLKEAEGKDKF- 256
++ ++ N F+ + Y IG + ++ E F
Sbjct: 448 SIVDHY-------------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 257 -------MLQQKLNRA--------------MRLVEWKEVYDPNNPTNYGVIRH-----EQ 290
L+QK+ +L +K N+P ++ +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 291 AGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDD 324
N+ + LL+ + +DE F++
Sbjct: 555 IEENL------ICSKYTDLLRIALMAEDEAIFEE 582
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Length = 296
Score = 52.3 bits (125), Expect = 9e-08
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 346 KLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGG 405
K++ LD F + E EI D K + +++ + K T+ G
Sbjct: 41 KISSLDEIFKYSIPIKEPEIID------HFYPKNKDVQAEHKLMEEVLQITPVQKQTQAG 94
Query: 406 QVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
Q ++ + G+ +G +G V A++
Sbjct: 95 QRTRFKGFVVVGDSNGHIGLGWKVAKEVQGAIKG 128
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
2zkq_e 1s1h_E
Length = 274
Score = 51.0 bits (122), Expect = 2e-07
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 356 KKGKLLEE-EIRDLAE---ERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYT 411
K G+L++E + E + E + G +++ + K T+ GQ ++
Sbjct: 49 KLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKITPVQKQTRAGQRTRFK 108
Query: 412 AMLACGNYHGVVGFAKAKGPAVPIALQK 439
A + G+ +G VG V A++
Sbjct: 109 AFVVVGDNNGHVGLGVKCAKEVATAIRG 136
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1,
RACK1); translation, ribosome, ribosomal, ribosomal R
ribosomal protein, eukaryotic ribosome, RNA-protein C;
3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B
3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Length = 254
Score = 49.9 bits (119), Expect = 4e-07
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 356 KKGKLLEE-EIRDLAE---ERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYT 411
K G+L++ +I + E + E + G +++++ K T+ GQ ++
Sbjct: 40 KLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAGQRTRFK 99
Query: 412 AMLACGNYHGVVGFAKAKGPAVPIALQK 439
A++ G+ +G VG V A++
Sbjct: 100 AVVVVGDSNGHVGLGIKTAKEVAGAIRA 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 48/333 (14%), Positives = 101/333 (30%), Gaps = 119/333 (35%)
Query: 155 ERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQVF------QKKFKRHKELLQNFT 208
+L++ + L EPT+ DDE + + +F + K + ++L
Sbjct: 31 SQLQEQFNKIL-PEPTEG-FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC- 87
Query: 209 EAETPDEAFKWMNKIDKFEQKHFPLR----HEYRVIGELMNRLKEAEGKDKFMLQQKLNR 264
+ +FE + L H + +L+ K K +++
Sbjct: 88 --------------LTEFENCY--LEGNDIHA--LAAKLLQENDTTLVKTKELIK----- 124
Query: 265 AMRLVEWKEVYDPNNPTNY----GVIRHEQAGPNVDAVENAEMDEEKRLL-----QGGVD 315
NY + + + A+ A + +L+ QG
Sbjct: 125 -----------------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG--- 164
Query: 316 DDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNAL 375
+ ++ F+++++ L + + + L + AE L E IR +
Sbjct: 165 -NTDDYFEELRD----LYQTYHVLVGDLIKFSAET----------LSELIRTTLDAE--- 206
Query: 376 TEKKRRPLYRKGFDVK--LIDVNRT------------CK---VTKGGQVVKYTAMLACGN 418
++ +G ++ L + + T C V Q+ Y
Sbjct: 207 ------KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI---QLAHYVVTAKLLG 257
Query: 419 YH---------GVVGFAKAKGPAVPIALQKVTW 442
+ G G ++ AV IA +W
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETD-SW 289
Score = 45.8 bits (108), Expect = 3e-05
Identities = 44/273 (16%), Positives = 78/273 (28%), Gaps = 93/273 (34%)
Query: 60 QEYSAKPI--------YSFSRKISTFSHFRYNQTSKPSILLKSHF--STGSAYSRVAQD- 108
YS +P+ + + T S F +Q L+ F A D
Sbjct: 2 DAYSTRPLTLSHGSLEHVLL--VPTASFFIASQ-------LQEQFNKILPEPTEGFAADD 52
Query: 109 -------LLAE----VEREKGREREARKRQGLDTKDIDQEDEEDYMG-------VGPLIE 150
L+ + V + + Q L E E Y+ L++
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL--NLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 151 KLEKERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEA 210
+ + +K + Y +R + F K+ L F
Sbjct: 111 ENDTTLVKTKELIKNYIT-------------ARIMAKRPFD------KKSNSAL--FRAV 149
Query: 211 ETPDEAFKWM-------NKIDKFEQKHFPLRHEY-----------RVIGELMNRLKEAEG 252
+ + + N D FE+ LR Y + E ++ L
Sbjct: 150 G--EGNAQLVAIFGGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 253 KDKFMLQQKLNRAMRLVEWKEVYDPNN--PTNY 283
+ + Q LN ++EW E +P+N +Y
Sbjct: 204 DAEKVFTQGLN----ILEWLE--NPSNTPDKDY 230
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 37.8 bits (88), Expect = 0.008
Identities = 23/178 (12%), Positives = 55/178 (30%), Gaps = 29/178 (16%)
Query: 106 AQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNL 165
+ D L E E + G E + + Q ++ I+ + RLK + +
Sbjct: 3 SDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHG------IDIVINHRLKTSLEEGK 56
Query: 166 YEEPTDSDSDEDD----------------------ERFSRDAVNKRFQVFQKKFKRHKEL 203
E T D + E + KR + K+F ++
Sbjct: 57 VLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFII-EDQ 115
Query: 204 LQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQK 261
T ++ + ++ + R+I L++ + +++++ +
Sbjct: 116 QVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWR 173
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 36.6 bits (85), Expect = 0.019
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 12/144 (8%)
Query: 240 IGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVE 299
I +L ++ E + K +L++ N + E +R + + E
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK-----------LRSDVERLRMSEEE 978
Query: 300 NAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGK 359
LQ + +E + + E + + E+ ++EL
Sbjct: 979 AKNATNRVLSLQEEIAKLRKE-LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Query: 360 LLEEEIRDLAEERNALTEKKRRPL 383
EE R + ++ +TE + L
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKL 1061
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 36.1 bits (82), Expect = 0.023
Identities = 37/239 (15%), Positives = 84/239 (35%), Gaps = 17/239 (7%)
Query: 150 EKLEKERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQVFQKK-----FKRHKELL 204
E L+ R + + ++ + D D ++ + K+ F K+ R LL
Sbjct: 352 ELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLL 411
Query: 205 QNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNR 264
Q + +K + L+ + E + +AE + L+ K +
Sbjct: 412 QVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESM 471
Query: 265 AMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDD 324
+++ + I E+ + E +R + ++ + +
Sbjct: 472 TDAILQTDQTLTEKEKE----IEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527
Query: 325 MK--------ERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNAL 375
+K +R +L E+ + KL+E+ L F K+ ++++ EI+DL +
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.0 bits (83), Expect = 0.031
Identities = 43/281 (15%), Positives = 98/281 (34%), Gaps = 34/281 (12%)
Query: 104 RVAQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDL 163
+ ++ A +E E+ + + + + + EE +KL+ E++ G +
Sbjct: 927 EILHEMEARIEEEE-ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 164 NLYEEPTDSDSDEDDERFS-RDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNK 222
E+ D++++ R + +R +E +N T+ + K +
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHESM 1040
Query: 223 IDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTN 282
I + E + L+ E + EL ++ EG+ + +Q ++ E K
Sbjct: 1041 ISELEVR---LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Query: 283 YGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDD--DDEEEFDDMKERDDILLERLNAID 340
A +++E + + E D++E LE A
Sbjct: 1098 --------------QAALARLEDETSQKNNALKKIRELESHISDLQED----LESEKAAR 1139
Query: 341 KKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRR 381
K E++ +L ++ + L+ E+ D + E +
Sbjct: 1140 NKAEKQKRDLS----EELEALKTELEDTLDTTATQQELRGS 1176
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.1 bits (80), Expect = 0.042
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 264 RAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFD 323
R +L E + + + +A N E + +EE R + +E+
Sbjct: 299 RRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQM---FVQRVKEKEA 355
Query: 324 DMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPL 383
++KE + L E+ + + K +++ +L+ K K L++E+ + + A + +
Sbjct: 356 ELKEAEKELHEKFDRLKKLHQDEKKKLE----DKKKSLDDEVNAFKQRKTAAELLQSQGS 411
Query: 384 YRKG 387
G
Sbjct: 412 QAGG 415
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 34.5 bits (79), Expect = 0.073
Identities = 35/264 (13%), Positives = 85/264 (32%), Gaps = 25/264 (9%)
Query: 133 DIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTDSDSDEDDERFSRDAVNKRFQV 192
+++ E G K P + + + E+ K F
Sbjct: 728 VLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEK-------KDFVK 780
Query: 193 FQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEG 252
++ R + +LQN+ E T +A + ++ D + F + E+ V E L+
Sbjct: 781 LFGEYLRAENILQNYDEFAT-LKALQQIDLSDPVAVEKF--KAEHYVDDEKFAELQTIRL 837
Query: 253 KDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEE------ 306
+Q + + +W+ + VD +++ E++ +
Sbjct: 838 PADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLI 897
Query: 307 -KRLLQGGVDDDDEEEFDDM-------KERDDILLERLNAIDKKLEEKLAELDHTFGK-K 357
+ Q + EE + + ++ ++++ + + A + F
Sbjct: 898 FEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFA 957
Query: 358 GKLLEEEIRDLAEERNALTEKKRR 381
+ + E L +E N + +R
Sbjct: 958 QREQQREAEALIKEENLNEDAAKR 981
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 34.0 bits (78), Expect = 0.077
Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 14/147 (9%)
Query: 90 ILLKSHFSTGSAYSRVAQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLI 149
IL F A L+ + +R + + +I ++E + G
Sbjct: 69 ILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSS 128
Query: 150 EKLEKERLKDTGD--LNLYEEPTDSDSDEDDERFSR--DAVNKRFQVF----------QK 195
E+E K GD + E ++ S+++ DA + Q
Sbjct: 129 NPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQL 188
Query: 196 KFKRHKELLQNFTEAETPDEAFKWMNK 222
+ L + EAF + +
Sbjct: 189 EIDHFFHYLNDTHGNIYSLEAFASLGE 215
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 33.8 bits (78), Expect = 0.12
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 290 QAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAE 349
+ GP A+M ++K GG + E E +D L + E +
Sbjct: 13 ELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLS--------VAELEQK 64
Query: 350 LDHTFGKKGKLLEEEIRDLAEE--RNALTEKKRRPLYRK 386
+ KG L +L NAL + P Y K
Sbjct: 65 YQTS-ATKG-LSASLAAELLLRDGPNALRPPRGTPEYVK 101
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 33.4 bits (76), Expect = 0.15
Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 54/273 (19%)
Query: 148 LIEKLEK---ERLKDTGDLNLYEEPTDSDSDEDDERF----SRDAVNK-RFQVFQKKFKR 199
+ E L K + EE +D+ +F S + + K R F ++FK
Sbjct: 492 IKEYLLLGLSGNDKIKPWIKDMEE-----QHDDNIKFIITLSPEEMAKTRKIGFYERFKL 546
Query: 200 HKEL-LQNFTEAETPDEAFKWMNKIDKFE------QKHFPLRHEY------RVIGELMNR 246
+ L N AF KI K+ + + +R EY + L
Sbjct: 547 ISPISLMNMV-------AFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWE 599
Query: 247 LKEAEGKDKF---MLQQKLNRAMR--------LVEWKEVYDPNNPTNYGVIRHEQAGPNV 295
+++ + KF +++++L + L Y +++ +
Sbjct: 600 VEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQI 659
Query: 296 DAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILL---------ERLNAIDKKLEEK 346
+ V+ A DEE ++ +++ + LL ER + K+ +EK
Sbjct: 660 NDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEK 719
Query: 347 LAELDHTFGKKGKLL-EEEIRDLAEERNALTEK 378
EL++ K + +++ ++
Sbjct: 720 ETELENLLKLSAKDIWNTDLKAFEVGYQEFLQR 752
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 32.2 bits (74), Expect = 0.42
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 13/108 (12%)
Query: 288 HEQAGPNVDAVEN--AEMDEEKRLLQGGVDDDDEEE-------FDDMKERDDIL--LERL 336
A + A+ + +D D+ ++ I +R
Sbjct: 250 KPFIKVLCKAQADLAAKAAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTIAGKQDRE 309
Query: 337 NAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEE--RNALTEKKRRP 382
+D+ +L F + K + R L + R + +K+R
Sbjct: 310 AELDRVKALAAEKLLPEFEGREKEISAAYRALTKSLVRERVIAEKKRI 357
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 31.3 bits (70), Expect = 0.72
Identities = 33/250 (13%), Positives = 78/250 (31%), Gaps = 18/250 (7%)
Query: 149 IEKLEKERLKDTGDLNLYEEPTDSDSDEDDERF----SRDAVNK-RFQVFQKKFKRHKEL 203
E++ + L T + +F + + + + K FK L
Sbjct: 534 KEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTL 593
Query: 204 LQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEY------RVIGELMNRLKEAEGKDKFM 257
N K + ++ F LR Y ++G L + + +F+
Sbjct: 594 TCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFI 653
Query: 258 LQQ-----KLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQG 312
L++ + + + + ++ E + E ++ G
Sbjct: 654 LEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSG 713
Query: 313 GVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLL-EEEIRDLAEE 371
D +M + E++ + K+ + K E++ K L +E++ EE
Sbjct: 714 TPSGPDFNYILNMSLW-SLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEE 772
Query: 372 RNALTEKKRR 381
+ + ++R
Sbjct: 773 LDKVESQERE 782
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 31.2 bits (71), Expect = 0.73
Identities = 16/168 (9%), Positives = 56/168 (33%), Gaps = 28/168 (16%)
Query: 224 DKFEQKHFPLRHEYRVI--GELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPT 281
E ++ ++ + ++ G++ ++ + M ++ E++E+ +
Sbjct: 133 IFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKL 192
Query: 282 NYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDK 341
+ ++ N + + L+ +D+ + R +++ +
Sbjct: 193 SK---SATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKA 249
Query: 342 KLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFD 389
+ ++ + + + +KKR+ L+ K FD
Sbjct: 250 EEKK---------------ILNQFLKI--------KKKRKELFEKTFD 274
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 31.1 bits (71), Expect = 0.76
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 325 MKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEE--RNALTEKKRRP 382
M +DI E ++ +EE +L + ++G L +E D + N L EKK
Sbjct: 1 MSSLEDIKNETVDLEKIPIEEVFQQLKCS--REG-LTTQEGEDRIQIFGPNKLEEKKESK 57
Query: 383 LYR 385
L +
Sbjct: 58 LLK 60
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 0.84
Identities = 15/81 (18%), Positives = 37/81 (45%)
Query: 300 NAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGK 359
A+M+EE+R + + E + + +++L + +L+ + ++ + K
Sbjct: 317 LAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHK 376
Query: 360 LLEEEIRDLAEERNALTEKKR 380
LEE+ R +E+ ++R
Sbjct: 377 ELEEKRRQFEDEKANWEAQQR 397
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 31.2 bits (71), Expect = 0.88
Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 37/239 (15%)
Query: 175 DEDDERFSRDAVNKRFQVFQKKFKRHKE------------LLQNFTEAETPDEAFKWM-- 220
+E ++ KR + + +Q+F A + +
Sbjct: 752 EERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK 811
Query: 221 ---------------------NKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQ 259
+ L +E + L+
Sbjct: 812 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK 871
Query: 260 QKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDE 319
++ A+ L ++ + N+ + G N + + + L+ +
Sbjct: 872 RQKKIAVLLQKYNRILKKLE--NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQS 929
Query: 320 EEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEK 378
E + IL + + E D F ++ ++ A E+
Sbjct: 930 LEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 988
>2k8y_A Uncharacterized protein MJ0187; regulatory subunit of the BUD32
kinase, component of the keops complex, structural
genomics, PSI-2; NMR {Methanocaldococcus jannaschii}
PDB: 3enh_C*
Length = 150
Score = 29.3 bits (65), Expect = 1.3
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 314 VDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERN 373
+ +D+E + + + + I++ E + E+ G + + E+
Sbjct: 89 ICEDEETFRKIYELIGGEIDDSVLEINEDKERLIREIFKIRG------FGNVVERVLEKI 142
Query: 374 ALTEKKR 380
AL E K+
Sbjct: 143 ALIELKK 149
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 326 KERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRR 381
+E L+ L+A K +E++ E K K +++ + + ++ EK +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWRE-------KAK---KDLEEWNQRQSEQVEKNKI 136
Score = 28.2 bits (62), Expect = 4.3
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 27/93 (29%)
Query: 105 VAQDLLAEVEREKGRE-REARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDL 163
+AQ E E R+ RE ++ K + + D K+ ++ ++
Sbjct: 74 IAQADRLTQEPESIRKWREEQR------KRLQELDAA---------SKVMEQEWREKAKK 118
Query: 164 NLYE---------EPTDSDSDEDDERF--SRDA 185
+L E E ++ D+ F DA
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 30.4 bits (69), Expect = 1.5
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 290 QAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAE 349
A +E+ + DE+ E DD E D L+E L + D E+ E
Sbjct: 8 GAPALSTNIESGKFDEKAAEAAAYQPKPKVE--DDEDEDIDALIEDLESHDGHDAEEEEE 65
Query: 350 LDHTFGKKG---KLLEEEIRD-L----AEER------NALTEKKRRPLYR 385
G + +L+ + R L +R N + E+K +
Sbjct: 66 EATPGGGRVVPEDMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEKENHFLK 115
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 29.9 bits (68), Expect = 1.8
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 296 DAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAID---KKLEEKLAELDH 352
D E A E + D ++ D+ E L++ ++D L+E +
Sbjct: 8 DKYEPAATSENATKSKKKGKKDKIDKKRDLDE-----LKKEVSMDDHKLSLDELHNKYG- 61
Query: 353 TFGKKGKLLEEEIRDLAEE--RNALTEKKRRPLYRK 386
T +G L +++ N+LT P + K
Sbjct: 62 TDLTRG-LTNARAKEILARDGPNSLTPPPTTPEWIK 96
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 29.6 bits (67), Expect = 1.8
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 341 KKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEK 378
++ K+ L + K L+EEI L T+K
Sbjct: 22 FEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKK 59
>3tix_B Chromo domain-containing protein 1; PIN, rossmann fold, SPOC,
alpha-helical hairpin, heterochrom silencing, RITS,
RNAI, argonaute; 2.90A {Schizosaccharomyces pombe}
Length = 458
Score = 29.7 bits (66), Expect = 2.0
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 203 LLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKL 262
L Q++ + + +++K++ + +I EL N L G D +
Sbjct: 389 LYQDWDIVIDDSADVSLASTLQLYQKKNYDKYRRFVLIHELKNELTPVNGLDIVDYDEFK 448
Query: 263 NRAMRLVEWK 272
MR + K
Sbjct: 449 ETFMRAIGLK 458
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 29.8 bits (68), Expect = 2.0
Identities = 8/61 (13%), Positives = 19/61 (31%)
Query: 314 VDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERN 373
+ + +++ +LN + L EK L E ++ + E +
Sbjct: 36 ATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENS 95
Query: 374 A 374
Sbjct: 96 V 96
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 29.5 bits (66), Expect = 2.5
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 267 RLVEWKEVYDPNNPTNYGVIRHEQ 290
RL K +DP N V RH
Sbjct: 505 RLQAVKARWDPRN-----VFRHAL 523
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 29.4 bits (66), Expect = 2.7
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 5/25 (20%)
Query: 267 RLVEWKEVYDPNNPTNYGVIRHEQA 291
RL K +DP N H +
Sbjct: 479 RLRSAKRAWDPLN-----TFHHSMS 498
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 302 EMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAID-KKLEEKLAELDHTFGKKGK 359
M +R+ G + D E + + R L+ N ++E++ + + F G+
Sbjct: 2 NMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGE 60
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
biovar eltor} PDB: 3ect_A*
Length = 195
Score = 28.6 bits (65), Expect = 2.9
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 302 EMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAI--DKKLEEKLAELDHTFGKKGK 359
+M E +++L+G D E + ++ + L +N + + EL FG G
Sbjct: 5 KMSELEKMLKGEHFDGASAEIEALRSQAGRLKLEINQSLDEAERYALQREL---FGHLGH 61
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 29.3 bits (66), Expect = 3.2
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 267 RLVEWKEVYDPNNPTNYGVIRHEQA 291
RL + K +DP + + QA
Sbjct: 449 RLQKLKAKFDPTD-----RFYYPQA 468
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 29.1 bits (65), Expect = 3.4
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 267 RLVEWKEVYDPNNPTNYGVIRHEQ 290
RL + K +DP + V RH
Sbjct: 497 RLQKVKARWDPRD-----VFRHAL 515
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 29.2 bits (65), Expect = 3.6
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 267 RLVEWKEVYDPNNPTNYGVIRHEQ 290
RL + K YDP N H
Sbjct: 501 RLRKVKAAYDPRN-----HFHHAL 519
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 28.5 bits (64), Expect = 3.8
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 236 EYRVIGELMNRLKEAEGK----DKFMLQQKLNRAMR--LVEW 271
EY + ++ L++ E K++L +++ MR L++W
Sbjct: 5 EY--VKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDW 44
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 5.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 334 ERLNAIDKK---LE-EKLA---ELDHTFGKKGKLLEEEIRDLAEERNALTEK 378
E ++A+++K LE E+ A E D ++ K +E EI L EE L +
Sbjct: 401 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAE 452
>3srt_A Maltose O-acetyltransferase; structural genomics, the center
structural genomics of infectious diseases, csgid; 2.50A
{Clostridium difficile}
Length = 188
Score = 27.9 bits (63), Expect = 5.5
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 303 MDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAE-LDHTFGKKGK 359
M E++++L G ++E +E L N + EK + L FG GK
Sbjct: 4 MTEKEKMLSGKGYYANDELLVKEREYCKKLTRLFNNTLEDEYEKREDILRQLFGSVGK 61
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat
shock, transcriptional regulation, winged DNA binding;
2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Length = 202
Score = 27.8 bits (61), Expect = 5.9
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 287 RHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEK 346
+ E A+ + + + E ++ ER + + ++LEE
Sbjct: 96 YEAKGVRKSPEYEQAKELIKSQEPINVKMRELAEFLHELNER----IREIIEEKRELEEA 151
Query: 347 LAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVN 396
++ + L EE R + EE EK P Y + K +++N
Sbjct: 152 RILIETYIENTMRRLAEENRQIIEEIFRDIEKILPPGYARSLKEKFLNIN 201
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 28.2 bits (63), Expect = 5.9
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 267 RLVEWKEVYDPNNPTNYGVIRHEQ 290
+L K YDP + V +
Sbjct: 456 KLQAIKAKYDPED-----VFGNVV 474
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 27.5 bits (62), Expect = 9.8
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 338 AIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEE 371
+D L L ++ LE E+ LA
Sbjct: 450 RLDV---AYLRALSLEVAEEIARLEAEVFRLAGH 480
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,016,693
Number of extensions: 454247
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 135
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.2 bits)