RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013474
(442 letters)
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 65.4 bits (160), Expect = 2e-14
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 388 FDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
KLI VNR K KGG++ +TA+ G+ +G VGF K VP A+QK
Sbjct: 2 LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 53
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 65.8 bits (161), Expect = 2e-14
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 388 FDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQK 439
+ +++ VNR KV KGG+ ++++A++ G+ +G VGF K VP A++K
Sbjct: 8 LEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRK 59
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 65.4 bits (160), Expect = 3e-14
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 388 FDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKVTW 442
F+ K+I + RT ++ GG+ ++ A++ G+ G VG K P VP+A+QK +
Sbjct: 2 FEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGY 56
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 31.1 bits (70), Expect = 0.25
Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 31/231 (13%)
Query: 178 DERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNK-IDKFEQKHFPLRHE 236
R D R + K+ + +L N +F + + K L+
Sbjct: 262 ALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI 321
Query: 237 YRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRH----EQAG 292
+ +R + + F L++ +RA L N +IRH +A
Sbjct: 322 IAAF--VRHRREVVTRRTIFELRKARDRAHILEALAVALA-NIDPIIELIRHAPTPAEAK 378
Query: 293 PNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDD------------IL---LERLN 337
+ A + L + G D E + D IL L++L
Sbjct: 379 TALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT 438
Query: 338 AID--------KKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKR 380
++ K+L +++AEL G +L+E +L R +K+R
Sbjct: 439 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 489
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 30.4 bits (68), Expect = 0.50
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 337 NAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEE--RNALTEKKRRPLYRK 386
A K EE LA G L ++++ E+ N L ++ + L+
Sbjct: 3 AAHSKSTEECLAYFG-VSETTG-LTPDQVKRHLEKYGHNELPAEEGKSLWEL 52
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 28.1 bits (62), Expect = 2.0
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 341 KKLEEKLAELDHTFGKKGKL---LEEEIRDLAEERNALTEKK 379
+LE K+ L + KL ++EE+ L E+ LT K
Sbjct: 10 AELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 51
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 28.0 bits (61), Expect = 2.5
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 314 VDDDDEEEFDDMKERDDIL---LERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAE 370
+ D D + D + E D + + L +L+ + EL + L + + +
Sbjct: 465 LKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELG--ASDEADLQRQLLEEAFG 522
Query: 371 E 371
Sbjct: 523 G 523
>d1jbsa_ d.1.1.3 (A:) Restrictocin {Fungus (Aspergillus
restrictus) [TaxId: 5064]}
Length = 149
Score = 26.6 bits (58), Expect = 3.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 3 NKTRPFSWSRLLLNQN--LKNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFP 56
KT + RLL +Q N PLS + S++PH+ TN N + P
Sbjct: 12 PKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTP 67
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 27.2 bits (59), Expect = 4.5
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 295 VDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLE-----EKLAE 349
+ +EN E D + RL+ + ++ + F E + L AI L E++ +
Sbjct: 4 IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63
Query: 350 LDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVK 409
L + +++ A ++ K + ++ C + ++VK
Sbjct: 64 LLCLYYAHYNRNAKQLWSDAHKKG---IKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120
Query: 410 ------YTA-MLACGNYH 420
Y A LA N H
Sbjct: 121 VIQAENYQAFRLAAENGH 138
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 119
Score = 25.8 bits (57), Expect = 5.5
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 316 DDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEE 371
D+D D + + L ID K+ + L G E+ IR + +E
Sbjct: 2 DEDAWASKDT----EAMKRALALIDSKMNQAKGWLRDPNAPPGDAGEQAIRQILDE 53
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 26.4 bits (57), Expect = 8.9
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 306 EKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEI 365
+ L G+ +++ EE + R ++ A + + F +K L +
Sbjct: 296 RRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQE 355
Query: 366 RDLAEE 371
L EE
Sbjct: 356 ALLKEE 361
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 24.9 bits (54), Expect = 9.2
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 292 GPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELD 351
G +D +D E + L+ + +++ + + +R+ + +E L
Sbjct: 22 GVALDLEALLALDREVQELK--------KRLQEVQTERNQVAKRVPKAPPEEKEALIARG 73
Query: 352 HTFGKKGKLLEEEIRDLAEERNAL 375
G++ K LEE +R+ AL
Sbjct: 74 KALGEEAKRLEEALREKEARLEAL 97
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 25.9 bits (56), Expect = 9.9
Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 1/159 (0%)
Query: 214 DEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKE 273
+ F QK L+ +Y + +E + + ++ +
Sbjct: 141 AGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLT 200
Query: 274 VYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDM-KERDDIL 332
+ QA + + ++ + + ++ + M +R +L
Sbjct: 201 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 260
Query: 333 LERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEE 371
E+ + KL+E+ L F K+ ++++ EI+DL +
Sbjct: 261 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,708,852
Number of extensions: 88371
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 38
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.9 bits)