BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013475
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 37 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 93
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 152
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 205
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 262
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 321
Query: 435 NGDVSV 440
D ++
Sbjct: 322 ENDKTI 327
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 39 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 95
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 154
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 207
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 264
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 323
Query: 435 NGDVSV 440
D ++
Sbjct: 324 ENDKTI 329
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 21 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 77
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 136
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 189
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 246
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 305
Query: 435 NGDVSV 440
D ++
Sbjct: 306 ENDKTI 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 21 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 77
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 136
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 189
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 246
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 305
Query: 435 NGDVSV 440
D ++
Sbjct: 306 ENDKTI 311
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 15 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 71
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 130
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 183
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 240
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 299
Query: 435 NGDVSV 440
D ++
Sbjct: 300 ENDKTI 305
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 15 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 71
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 130
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 183
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 240
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 299
Query: 435 NGDVSV 440
D ++
Sbjct: 300 ENDKTI 305
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 32 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 88
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 147
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 200
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 257
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 316
Query: 435 NGDVSV 440
D ++
Sbjct: 317 ENDKTI 322
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 16 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 72
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 131
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 184
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 241
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 300
Query: 435 NGDVSV 440
D ++
Sbjct: 301 ENDKTI 306
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 11 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 67
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 126
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 179
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 236
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 295
Query: 435 NGDVSV 440
D ++
Sbjct: 296 ENDKTI 301
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 20 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 76
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 135
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 188
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 245
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 304
Query: 435 NGDVSV 440
D ++
Sbjct: 305 ENDKTI 310
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 21 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 77
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 136
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 189
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 246
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 305
Query: 435 NGDVSV 440
D ++
Sbjct: 306 ENDKTI 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 14 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 70
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 129
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 182
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 239
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 298
Query: 435 NGDVSV 440
D ++
Sbjct: 299 ENDKTI 304
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 18 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 74
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 133
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 186
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 243
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 302
Query: 435 NGDVSV 440
D ++
Sbjct: 303 ENDKTI 308
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 18 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 74
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 133
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 186
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 243
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 302
Query: 435 NGDVSV 440
D ++
Sbjct: 303 ENDKTI 308
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LA++ D+ I IW + D K + ++ H ++DV
Sbjct: 18 LKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAY--DGKFEKTISGHKLGISDV 74
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 133
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TGK P+ V F +G +WD +
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 186
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 243
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 302
Query: 435 NGDVSV 440
D ++
Sbjct: 303 ENDKTI 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 18 LMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 74
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 133
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TG P+ V F +G +WD +
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 186
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 243
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 302
Query: 435 NGDVSV 440
D ++
Sbjct: 303 ENDKTI 308
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
L L HTKAV+S+ +SP + LAS+ D+ I IW + D K + ++ H ++DV
Sbjct: 18 LMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 74
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
WS ++S D + ++ DV G ++ + V F+P+ SNL +SG
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 133
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
+R+WD++TG P+ V F +G +WD +
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 186
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
L + + V+ P Y +A + N + ++ + L K Y H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL---KTYTGHKNEKYCI 243
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
+FS+ G K +VSGS D +Y +N ++ E+ +K++ + I A HP NII S +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 302
Query: 435 NGDVSV 440
D ++
Sbjct: 303 ENDKTI 308
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 123/295 (41%), Gaps = 34/295 (11%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
G+L L H+ +V + +SP +ASA D+++ +WN R+ +L + L HS++V
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVW 184
Query: 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG 254
V +S G + S D + +L + + +VR V F P+ + + K
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK- 243
Query: 255 LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREV 314
++LW+ R G++ L + ++NG F + +W+ + ++
Sbjct: 244 TVKLWN-RNGQL-------LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL 295
Query: 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRLDKFKRYESH----- 368
+ H + VA S +G IA S +L + R H
Sbjct: 296 ------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL--WNRNGQHLQTLT 341
Query: 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423
G S +FS DG+ + S S D ++ +N R+ +L + + + + VAF P
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 395
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 119/283 (42%), Gaps = 22/283 (7%)
Query: 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ 200
L H+ +V + +SP +ASA D+++ +WN R+ +L + L HS++V V +S
Sbjct: 12 LEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWD 260
G + S D + +L + + +VR V F P+ + + K ++LW+
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWN 126
Query: 261 IRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVPLSKQV 320
R G++ + V F+ +G+ + +W+ R L + +
Sbjct: 127 -RNGQLLQTLTGHSSSVWGVAFSPDGQTI-------ASASDDKTVKLWN--RNGQLLQTL 176
Query: 321 YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380
+ + V P + S+ + +++ L + S V G +FS
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSS-VRG----VAFS 230
Query: 381 LDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423
DG+ + S S D ++ +N R+ +L + + + + VAF P
Sbjct: 231 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRP 272
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 22/289 (7%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
G+L L H+ +V + +SP +ASA D+++ +WN R+ +L + L HS++V
Sbjct: 47 GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVR 102
Query: 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG 254
V +S G + S D + +L + + +V V F P+ + + K
Sbjct: 103 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK- 161
Query: 255 LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREV 314
++LW+ R G++ + V F+ +G+ + +W+ R
Sbjct: 162 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI-------ASASDDKTVKLWN--RNG 211
Query: 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374
L + + + + V P + S+ + +++ L + S V+G
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSS-VNG-- 267
Query: 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423
+F DG+ + S S D ++ +N R+ +L + + + + VAF P
Sbjct: 268 --VAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 313
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 123/299 (41%), Gaps = 22/299 (7%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
G+L L H+ +V + +SP +ASA D+++ +WN R+ + + L HS++V
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN---RNGQHLQTLTGHSSSVW 348
Query: 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG 254
V +S G + S D + +L + + +VR V F P+ + + K
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK- 407
Query: 255 LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREV 314
++LW+ R G++ + V F+ + + + +W+ R
Sbjct: 408 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTI-------ASASDDKTVKLWN--RNG 457
Query: 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374
L + + + + V P + S+ + +++ L + S V G
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSS-VRG-- 513
Query: 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS 433
+FS DG+ + S S D ++ +N R+ +L + + + + VAF P I + S
Sbjct: 514 --VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 108/259 (41%), Gaps = 21/259 (8%)
Query: 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ 200
L H+ +V + +SP +ASA D+++ +WN R+ +L + L HS++V V +S
Sbjct: 340 LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSP 395
Query: 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWD 260
G + S D + +L + + +V V F P++ + + K ++LW+
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVKLWN 454
Query: 261 IRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVPLSKQV 320
R G++ + V F+ +G+ + +W+ R L + +
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSPDGQTI-------ASASDDKTVKLWN--RNGQLLQTL 504
Query: 321 YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380
+ + V P + S+ + +++ + H S + + +FS
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGV--AFS 558
Query: 381 LDGEKLVSGSSDGSIYFYN 399
DG+ + S SSD ++ +N
Sbjct: 559 PDGQTIASASSDKTVKLWN 577
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
G+L L H+ +V + +SP +ASA D+++ +WN R+ +L + L HS++V
Sbjct: 498 GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVW 553
Query: 195 DVKWSQQGLFVLSCGYDCSSRL 216
V +S G + S D + +L
Sbjct: 554 GVAFSPDGQTIASASSDKTVKL 575
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 364 RYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423
R E+H S + +FS DG+ + S S D ++ +N R+ +L + + + + VAF P
Sbjct: 11 RLEAHSSSVRGV--AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWS 199
L HTK V + W PT ++L SAG D I +W+V + L + H + V WS
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 200 QQGLFVLSCGYDCSSRLVDVEKG 222
+ G + + D R+++ KG
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 177 SRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGIETQSFREELA-- 233
R K ++ H+A V D+ W V++ G DC+ + ++ G RE +
Sbjct: 68 GRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 234 ------VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGP 276
V +V +HP N+ LS G ++ +WD+ TG + +LGP
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAA----VLTLGP 172
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
HTK V + W PT ++L SAG D I +W+V + L + H + V WS+ G
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 204 FVLSCGYDCSSRLVDVEKG 222
+ + D R+++ KG
Sbjct: 190 LICTSCRDKRVRVIEPRKG 208
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 189 HSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGIETQSFREELA--------VRVVKF 239
H+A V D+ W V++ G DC+ + ++ G RE + V +V +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 240 HPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGP 276
HP N+ LS G ++ +WD+ TG + +LGP
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAA----VLTLGP 172
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L + HT V +I +A ++ SA D+SI +W + D+ R L HS V
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGS 252
DV S G F LS +D RL D+ G+ T+ F V V F +N + +S
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-VSASR 492
Query: 253 KGLLRLWD 260
++LW+
Sbjct: 493 DRTIKLWN 500
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 91 KPDPSAVVAAAQVLGS---ISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTA-LCHHTK 146
K D + VA ++ G + D L D L +R + +ST HTK
Sbjct: 414 KDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK 473
Query: 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSR-DQKLARVLNFHSAAVNDVKWSQQGL-- 203
V S+ +S + ++ SA D++I +WN ++ H V+ V++S L
Sbjct: 474 DVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532
Query: 204 FVLSCGYDCSSRLVDVEKGIETQSFREELA-----VRVVKFHPENSNLFLSGGSKGLLRL 258
++S +D + ++ + + R LA V V P+ S L SGG G++ L
Sbjct: 533 TIVSASWDKTVKVWN----LSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLL 587
Query: 259 WDIRTGK 265
WD+ GK
Sbjct: 588 WDLAEGK 594
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 160 LLASAGMDQSICIWNVWSRDQKLA-----RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214
+L S D+++ IW ++ +Q + L H+ V+D+ SQ+ F +S +D +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 215 RLVDVEKGIETQSF-REELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
RL D+ G + F + V V F P+N + LS G++ ++LW+I
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKLWNI 147
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVK 197
T HT V ++W H L S DQ + IW+ S + K + ++ H+A VN +
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 280
Query: 198 WSQQGLFVLSCG-YDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKG 254
++ F+L+ G D + L D+ ++ SF + + V++ P N + S G+
Sbjct: 281 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 340
Query: 255 LLRLWDI 261
L +WD+
Sbjct: 341 RLNVWDL 347
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--RDQKLA---RVLNFHSAAVNDVKW 198
H K ++W+P + L SA D +IC+W++ + ++ K+ + H+A V DV W
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 235
Query: 199 S--QQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA----VRVVKFHPENSNLFLSGGS 252
+ LF S D + D ++ A V + F+P + + +G +
Sbjct: 236 HLLHESLFG-SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 253 KGLLRLWDIRTGKVA-HEYIQSLGPILDVEFT 283
+ LWD+R K+ H + I V+++
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 326
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA-RVLNF 188
RS + S ++ HT VN ++++P +LA+ D+++ +W++ R+ KL
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNLKLKLHSFES 315
Query: 189 HSAAVNDVKWSQQGLFVL-SCGYDCSSRLVDVEKGIETQS 227
H + V+WS +L S G D + D+ K E QS
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L L H V S+ S +LL SA D+++ W + DQK R HS V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNLFLS 249
D + G + LS +D + RL DV G Q F + ++V + K +++ +S
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK----KASMIIS 118
Query: 250 GGSKGLLRLWDIR 262
G +++W I+
Sbjct: 119 GSRDKTIKVWTIK 131
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L L H V S+ S +LL SA D+++ W + DQK R HS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNLFLS 249
D + G + LS +D + RL DV G Q F + ++V + K +++ +S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK----KASMIIS 124
Query: 250 GGSKGLLRLWDIR 262
G +++W I+
Sbjct: 125 GSRDKTIKVWTIK 137
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L L H V S+ S +LL SA D+++ W + DQK R HS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNLFLS 249
D + G + LS +D + RL DV G Q F + ++V + K +++ +S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK----KASMIIS 124
Query: 250 GGSKGLLRLWDIR 262
G +++W I+
Sbjct: 125 GSRDKTIKVWTIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L L H V S+ S +LL SA D+++ W + DQK R HS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNLFLS 249
D + G + LS +D + RL DV G Q F + ++V + K +++ +S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK----KASMIIS 124
Query: 250 GGSKGLLRLWDIR 262
G +++W I+
Sbjct: 125 GSRDKTIKVWTIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L L H V S+ S +LL SA D+++ W + DQK R HS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNLFLS 249
D + G + LS +D + RL DV G Q F + ++V + K +++ +S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK----KASMIIS 124
Query: 250 GGSKGLLRLWDIR 262
G +++W I+
Sbjct: 125 GSRDKTIKVWTIK 137
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQG 202
HT V + W H L S DQ + IW+ + + K + ++ H+A VN + ++
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 203 LFVLSCG-YDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259
F+L+ G D + L D+ ++ SF + + V++ P N + S G+ L +W
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 260 DI 261
D+
Sbjct: 352 DL 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF------HSAAVNDVK 197
H K ++W+P L SA D +IC+W++ + K RV++ H+A V DV
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 198 WS--QQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA----VRVVKFHPENSNLFLSGG 251
W + LF S D + D ++ A V + F+P + + +G
Sbjct: 241 WHLLHESLFG-SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 299
Query: 252 SKGLLRLWDIRTGKVA-HEYIQSLGPILDVEFT 283
+ + LWD+R K+ H + I V+++
Sbjct: 300 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 332
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQG 202
HT V + W H L S DQ + IW+ + + K + ++ H+A VN + ++
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 203 LFVLSCG-YDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259
F+L+ G D + L D+ ++ SF + + V++ P N + S G+ L +W
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 260 DI 261
D+
Sbjct: 350 DL 351
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF------HSAAVNDVK 197
H K ++W+P L SA D +IC+W++ + K RV++ H+A V DV
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 198 WS--QQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA----VRVVKFHPENSNLFLSGG 251
W + LF S D + D ++ A V + F+P + + +G
Sbjct: 239 WHLLHESLFG-SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297
Query: 252 SKGLLRLWDIRTGKVA-HEYIQSLGPILDVEFT 283
+ + LWD+R K+ H + I V+++
Sbjct: 298 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQG 202
HT V + W H L S DQ + IW+ + + K + ++ H+A VN + ++
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 203 LFVLSCG-YDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259
F+L+ G D + L D+ ++ SF + + V++ P N + S G+ L +W
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 260 DI 261
D+
Sbjct: 354 DL 355
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF------HSAAVNDVK 197
H K ++W+P L SA D +IC+W++ + K RV++ H+A V DV
Sbjct: 184 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-NATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 198 WS--QQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA----VRVVKFHPENSNLFLSGG 251
W + LF S D + D ++ A V + F+P + + +G
Sbjct: 243 WHLLHESLFG-SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 252 SKGLLRLWDIRTGKVA-HEYIQSLGPILDVEFT 283
+ + LWD+R K+ H + I V+++
Sbjct: 302 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 93/270 (34%), Gaps = 63/270 (23%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL----ARVLNFHSAA 192
L L H V I +P ++ SA D++I +W + +RD+ R L HS
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHF 65
Query: 193 VNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS 252
V+DV S G F LS +D
Sbjct: 66 VSDVVISSDGQFALSGSWD----------------------------------------- 84
Query: 253 KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSR 312
G LRLWD+ TG ++ +L V F+ + +Q I +W+
Sbjct: 85 -GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-------VSGSRDKTIKLWNTLG 136
Query: 313 EVPLSKQVYVEAYTCPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH-G 369
+ Q + CVR P +P V+ + +++ L K +H G
Sbjct: 137 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN------LANCKLKTNHIG 190
Query: 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399
+G+ + S DG SG DG ++
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
G + HTK V S+ +S + ++ S D++I +WN K HS V+
Sbjct: 95 GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGV-CKYTVQDESHSEWVS 152
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEK----GIETQSFREELAVRVVKFHPENSNLFL 248
V++S ++SCG+D +LV V ++T + V P+ S L
Sbjct: 153 CVRFSPNSSNPIIVSCGWD---KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCA 208
Query: 249 SGGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279
SGG G LWD+ GK H Y G I++
Sbjct: 209 SGGKDGQAMLWDLNEGK--HLYTLDGGDIIN 237
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 93/270 (34%), Gaps = 63/270 (23%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL----ARVLNFHSAA 192
L L H V I +P ++ SA D++I +W + +RD+ R L HS
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHF 88
Query: 193 VNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS 252
V+DV S G F LS +D
Sbjct: 89 VSDVVISSDGQFALSGSWD----------------------------------------- 107
Query: 253 KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSR 312
G LRLWD+ TG ++ +L V F+ + +Q I +W+
Sbjct: 108 -GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-------VSGSRDKTIKLWNTLG 159
Query: 313 EVPLSKQVYVEAYTCPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH-G 369
+ Q + CVR P +P V+ + +++ L K +H G
Sbjct: 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN------LANCKLKTNHIG 213
Query: 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399
+G+ + S DG SG DG ++
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
G + HTK V S+ +S + ++ S D++I +WN + + + HS V+
Sbjct: 118 GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDES-HSEWVS 175
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEK----GIETQSFREELAVRVVKFHPENSNLFL 248
V++S ++SCG+D +LV V ++T + V P+ S L
Sbjct: 176 CVRFSPNSSNPIIVSCGWD---KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCA 231
Query: 249 SGGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279
SGG G LWD+ GK H Y G I++
Sbjct: 232 SGGKDGQAMLWDLNEGK--HLYTLDGGDIIN 260
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG-IETQSFREELAVRVVKFHPE 242
R L HSA V+DV S G F +S +D S RL +++ G + + V V F P+
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 243 NSNLFLSGGSKGLLRLWDIRTGKVAH 268
N + +SGG LR+W+++ G+ H
Sbjct: 121 NRQI-VSGGRDNALRVWNVK-GECMH 144
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-DQKLARVLNFHSAAV 193
G+ HTK V S+ +SP + ++ S G D ++ +WNV L+R H+ V
Sbjct: 99 GQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGECMHTLSR--GAHTDWV 155
Query: 194 NDVKW--SQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSG 250
+ V++ S ++S G+D ++ D+ G + V V P+ S L S
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS-LCASS 214
Query: 251 GSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285
G+ RLWD+ G+ E + + PI + F+ N
Sbjct: 215 DKDGVARLWDLTKGEALSE-MAAGAPINQICFSPN 248
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 18/174 (10%)
Query: 242 ENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXX 301
N N +S LRLW+++ G+ ++++ +L V F+ + +Q
Sbjct: 77 NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI-------VSGGR 129
Query: 302 XXXIVVWDVSREV--PLSKQVYVEAYTCPCVRHHP-FD-PYFVAQSNGNYIAIFSSTPPF 357
+ VW+V E LS+ + + + CVR P D P V+ N + ++
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVS--CVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA 411
+ K G + + + S DG S DG ++ E ++ A
Sbjct: 188 LVTDLK-----GHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA---RVLNFHSAAV 193
L L H V S+ S +LL SA D+++ W + DQK R HS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF-REELAVRVVKFHPENSNLFLSGGS 252
D + G + LS +D + RL DV G Q F + V V + S + +SG
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI-ISGSR 127
Query: 253 KGLLRLWDIR 262
+++W I+
Sbjct: 128 DKTIKVWTIK 137
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 161 LASAGMDQSICIWNVWS---RDQKL--ARVLNFHSAAVNDVKW--SQQGLFVLSCGYDCS 213
+A G+D + I+N+ S RD + +RVL H + ++ Q+ + G D +
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-DQT 181
Query: 214 SRLVDVEKGIETQSFREEL------AVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKV 266
L DV G F E V + + N+N+F+SG +RLWD+R T +
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 267 AHEYIQSLGPILDVEFTINGKQF 289
Y G I V+F +G++F
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRF 264
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Query: 129 RRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF 188
R +P +S L H +S + P L + DQ+ +W+V + + F
Sbjct: 143 RDGNMP--VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200
Query: 189 HSAAVNDVKW----SQQGLFVLSCGYDCSSRLVDVEKGIETQSFR----EELAVRVVKFH 240
S DV S +S D + RL D+ I +++ R E + VKF
Sbjct: 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR--ITSRAVRTYHGHEGDINSVKFF 258
Query: 241 PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-------SLGPILDVEFTINGK 287
P+ F +G G RL+D+RTG Y + L + V F+I+G+
Sbjct: 259 PDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-DQKLARVLNFHSAAVNDVKWSQQG 202
H+ V + W H L S DQ + IW+ S K + +++ H+A VN + ++
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 203 LFVLSCG-YDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259
F+L+ G D + L D+ ++ +F + + V + P N + S G+ L +W
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 260 DI 261
D+
Sbjct: 348 DL 349
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 30/143 (20%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--RDQKLAR---VLNFHSAAVNDVKW 198
H K ++W+ + L SA D ++C+W++ + ++ K+ + HSA V DV W
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Query: 199 ------------SQQGLFVLSCGYDCSSR---LVDVEKGIETQSFREELAVRVVKFHPEN 243
Q L + + +S+ LVD V + F+P +
Sbjct: 238 HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA----------EVNCLSFNPYS 287
Query: 244 SNLFLSGGSKGLLRLWDIRTGKV 266
+ +G + + LWD+R K+
Sbjct: 288 EFILATGSADKTVALWDLRNLKL 310
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA-RVLNF 188
RS + S + HT VN ++++P +LA+ D+++ +W++ R+ KL
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNLKLKLHTFES 317
Query: 189 HSAAVNDVKWSQQGLFVL-SCGYDCSSRLVDVEKGIETQS 227
H + V WS +L S G D + D+ K E QS
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-DQKLARVLNFHSAAVNDVKWSQQG 202
H+ V + W H L S DQ + IW+ S K + +++ H+A VN + ++
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 203 LFVLSCG-YDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259
F+L+ G D + L D+ ++ +F + + V + P N + S G+ L +W
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 260 DI 261
D+
Sbjct: 348 DL 349
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 30/143 (20%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--RDQKLAR---VLNFHSAAVNDVKW 198
H K ++W+ + L SA D ++C+W++ + ++ K+ + HSA V DV W
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Query: 199 ------------SQQGLFVLSCGYDCSSR---LVDVEKGIETQSFREELAVRVVKFHPEN 243
Q L + + +S+ LVD V + F+P +
Sbjct: 238 HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTA----------EVNCLSFNPYS 287
Query: 244 SNLFLSGGSKGLLRLWDIRTGKV 266
+ +G + + LWD+R K+
Sbjct: 288 EFILATGSADKTVALWDLRNLKL 310
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA-RVLNF 188
RS + S + HT VN ++++P +LA+ D+++ +W++ R+ KL
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNLKLKLHTFES 317
Query: 189 HSAAVNDVKWSQQGLFVL-SCGYDCSSRLVDVEKGIETQSFRE 230
H + V WS +L S G D + D+ K E QS +
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAED 360
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
H + V + WSP + LASA D + CIW D + L H V V W+ G
Sbjct: 60 HQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 204 FVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNL 246
+ +C D S + +V++ E + V+ V +HP L
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-KLARVLNFHSAAVNDVK 197
T L H V S+ W+P+ +LLA+ D+S+ +W V D+ + VLN H+ V V
Sbjct: 99 TTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157
Query: 198 WSQQGLFVLSCGYDCSSRLVDVEK 221
W + S YD + +L E+
Sbjct: 158 WHPSQELLASASYDDTVKLYREEE 181
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 98 VAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCH--HTKAVNSINWSP 155
+A Q+ G+++ A D + + + P S ++ P TA H H++ VN + W+P
Sbjct: 258 IAWCQLTGALATA-CGDDAIRVFQEDPNSDPQQ---PTFSLTAHLHQAHSQDVNCVAWNP 313
Query: 156 THAHLLASAGMDQSICIW 173
LLAS D + W
Sbjct: 314 KEPGLLASCSDDGEVAFW 331
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR--------VLNFHSAAVND 195
H KA+ S+ W P H LLA+ D ++ I W++++ R ++ H V
Sbjct: 57 HKKAIRSVAWRP-HTSLLAAGSFDSTVSI---WAKEESADRTFEMDLLAIIEGHENEVKG 112
Query: 196 VKWSQQGLFVLSCGYDCSSRLVDV-EKGIETQ--SFREELA--VRVVKFHPENSNLFLSG 250
V WS G ++ +C D S + + E G E + S +E + V+ V +HP + L S
Sbjct: 113 VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASS 171
Query: 251 GSKGLLRLW 259
+R+W
Sbjct: 172 SYDDTVRIW 180
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKW 198
+ L H++ V + W P+ A LLAS+ D ++ IW + D + VLN H V W
Sbjct: 147 SVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----W 201
Query: 199 SQ-----QGLFVLSCGYDCSS 214
S +G+F L G D S+
Sbjct: 202 SSDFDKTEGVFRLCSGSDDST 222
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLS 207
+ S+ +SP LA+ D+ I IW++ +R K+ +L H + + + G ++S
Sbjct: 126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 208 CGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG 264
D + R+ D+ G + + E V V P + +G +R+WD TG
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 17/196 (8%)
Query: 231 ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFX 290
+L +R V F P+ +G L+R+WDI K+ I +++ +G +
Sbjct: 123 DLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 291 XXXXXXXXXXXXXXIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAI 350
+ +WD+ R S + +E Y A S + +
Sbjct: 182 SGSGDRT-------VRIWDL-RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 351 FSSTPPFRLDKFKRYESHGVSGFPIKCS-----FSLDGEKLVSGSSDGSIYFYNCRSSEL 405
+ S F ++ R +S SG K S F+ DG+ +VSGS D S+ +N +++
Sbjct: 234 WDSETGFLVE---RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 406 ERKIKAYEQACIDVAF 421
+ K +V +
Sbjct: 291 KSDSKTPNSGTCEVTY 306
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Query: 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217
+ L + + W V Q + + H+ V DV WS G V + D ++++
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 218 DVEKGIETQSFREELAVRVVKF-HPENSNLFLSGGSKGLLRLWDIRT 263
D+ Q + + V+ + + N + ++G L+ WD R+
Sbjct: 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNV--------------WSRDQ 180
G S L H + + +++WSP + ++LA+A D + +W+V + Q
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225
+ H+ VN + ++ GL +L+ G D RL + G T
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVND--VKWSQQ 201
H +V ++ W P + S+ D+++ +W+ + + A V NF + S +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWD--TNTLQTADVFNFEETVYSHHMSPVSTK 155
Query: 202 GLFVLSCGYDCSSRLVDVEKGIET---QSFREELAVRVVKFHPENSNLFLSGGSKGLLRL 258
V +L D++ G + Q R+E + V + P + + + ++L
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE--ILAVSWSPRYDYILATASADSRVKL 213
Query: 259 WDIR 262
WD+R
Sbjct: 214 WDVR 217
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 98 VAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTH 157
+AA V+G I LL L V+ S+ R T +N+I+W P
Sbjct: 503 IAAGDVMGKI-----------LLYDLQSREVKTSRWAFR--------TSKINAISWKPAE 543
Query: 158 A---------HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC 208
L+A+ +D +I I++V R K+ + LN H VN++ W V S
Sbjct: 544 KGANEEEIEEDLVATGSLDTNIFIYSV-KRPMKIIKALNAHKDGVNNLLWETPSTLVSSG 602
Query: 209 GYDCSSR 215
C R
Sbjct: 603 ADACIKR 609
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 161 LASAGMDQSICIWNV-WSRDQKLA---RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216
+A G+D ++ + + +++ +A + + H+ ++ ++ + +L+ D + L
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 217 VDVEKGIETQSFREELA-VRVVKFHP-ENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274
DVE G QSF A V + P E N F+SGG +WD+R+G+ +
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 275 GPILDVEFTINGKQF 289
+ V + +G F
Sbjct: 241 SDVNSVRYYPSGDAF 255
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 129 RRSKIPGRLSTALCH----HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR 184
++ KI ++ L H H++ VN +++ + HLL + G S C +W +QK R
Sbjct: 685 KKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG--SSDCFLKLWDLNQKECR 742
Query: 185 VLNF-HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF 228
F H+ +VN ++S + SC D + +L D E +S
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSI 787
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 379 FSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438
FS DG+++ S +D ++ + + E +IKA+E + AF I +CS + V
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF-STDDRFIATCSVDKKV 687
Query: 439 SVY 441
++
Sbjct: 688 KIW 690
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF-HPILPNIIGSCSWN 435
C FS D + L S S+DG++ ++ S+ ERK +Q +++ + I+ CSW+
Sbjct: 755 CRFSPDDKLLASCSADGTLKLWDATSAN-ERKSINVKQFFLNLEDPQEDMEVIVKCCSWS 813
Query: 436 GD 437
D
Sbjct: 814 AD 815
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG---IETQSFREELAVRVVKFHPENSN 245
H+ AV +S+ G + SCG D + ++ E G +E ++ +E V F ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDE--VLCCAFSTDDRF 677
Query: 246 LFLSGGSKGLLRLWDIRTGKVAHEY 270
+ K + ++W+ TG++ H Y
Sbjct: 678 IATCSVDKKV-KIWNSMTGELVHTY 701
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 25/203 (12%)
Query: 243 NSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXX 302
+ + ++G S +R+WD+ TG++ + I +L + F NG
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMV--------TCSKD 232
Query: 303 XXIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIF-SSTPPF--RL 359
I VWD++ ++ + + + D Y V+ S I ++ +ST F L
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 360 DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDV 419
+ KR G++ + +VSGSSD +I ++ R ++ +E+ +
Sbjct: 293 NGHKR----GIACLQYR------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 420 AFHPILPNIIGSCSWNGDVSVYE 442
F I S +++G + V++
Sbjct: 343 RFD---NKRIVSGAYDGKIKVWD 362
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 111 YLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSI 170
Y + I++ LRH P LS + T V + WS ++ G++
Sbjct: 85 YWKLTIIAELRH-----------PFALSASSGKTTNQVTCLAWSHDGNSIVT--GVENGE 131
Query: 171 CIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR 229
+W++ L VLNFH A + VKW++ G ++S + + L +V G Q F
Sbjct: 132 L--RLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 37/305 (12%)
Query: 162 ASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220
A+ D S+ +W++ + D +K L S ND+ WS + + S L
Sbjct: 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSK-FNDLDWSHNNKIIAGALDNGSLELYSTN 97
Query: 221 KGIETQSFREELA-----VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG 275
+ + + V+ VKF+ + N+ SGG+ G + +WD+ + L
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157
Query: 276 P---ILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVPLSKQVYVEAYTCP---- 328
P + V+ I+ +WD+ + K+V +YT P
Sbjct: 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSPNSGI 213
Query: 329 -----CVRHHPFDPYFVAQSNGN----YIAIF----SSTPPFRLDKFKRYESHGVSGFPI 375
V HP + VA + G+ I I+ ++TP L + G+
Sbjct: 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGHQKGILSLDW 270
Query: 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWN 435
C D L+S D ++ +N S+E + A C F P P++ S++
Sbjct: 271 -C--HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD 327
Query: 436 GDVSV 440
+ V
Sbjct: 328 NKIEV 332
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ 180
+R + P L T H K + S++W HLL S+G D ++ +WN S +Q
Sbjct: 247 LRNANTP--LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 99 AAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHA 158
A + SI D +++++ L P S +++ +LS + W P ++
Sbjct: 184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ-----QLSV-----------VEWHPKNS 227
Query: 159 HLLASA---GMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL-FVLSCGYDCSS 214
+A+A D SI IW++ + + L + H + + W Q +LS G D +
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Query: 215 RLVDVEKGIETQSF--REELAVRVVKFHPENSNLF 247
L + E + F R + KF PE +LF
Sbjct: 288 LLWNPESAEQLSQFPARGNWCFK-TKFAPEAPDLF 321
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
HT V S+ + H + S +D SI +W+V L H + + ++
Sbjct: 278 HTNRVYSLQFDGIH---VVSGSLDTSIRVWDV--ETGNCIHTLTGHQSLTSGMELKDN-- 330
Query: 204 FVLSCGYDCSSRLVDVEKGIETQSF----REELAVRVVKFHPENSNLFLSGGSKGLLRLW 259
++S D + ++ D++ G Q+ + + AV ++F N N ++ G ++LW
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLW 387
Query: 260 DIRTGKVAHEYIQSL 274
D++TG E+I++L
Sbjct: 388 DLKTG----EFIRNL 398
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAV 193
G+ L H AV + + + S D + +W+ + L H+ V
Sbjct: 228 TGQCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRV 282
Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKG--IETQSFREELAVRVVKFHPENSNLFLSGG 251
+++ G+ V+S D S R+ DVE G I T + + L + N+ +SG
Sbjct: 283 YSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM----ELKDNILVSGN 336
Query: 252 SKGLLRLWDIRTGK 265
+ +++WDI+TG+
Sbjct: 337 ADSTVKIWDIKTGQ 350
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/290 (18%), Positives = 116/290 (40%), Gaps = 41/290 (14%)
Query: 161 LASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL--FVLSCGYDCSSRLVD 218
+ S D ++ +W+ + K R L H+ V WS Q ++S D + ++ +
Sbjct: 132 IVSGSDDNTLKVWS--AVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWN 185
Query: 219 VEKGIETQS-FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI 277
E G + + VR + H + +SG LR+WDI TG+ H + + +
Sbjct: 186 AETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242
Query: 278 LDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP 337
V++ +G++ + VWD P E TC +
Sbjct: 243 RCVQY--DGRRV-------VSGAYDFMVKVWD-----P-------ETETCLHTLQGHTNR 281
Query: 338 YFVAQSNGNYIAIFSSTPPFRLDKFKRYES-HGVSGF-PIKCSFSLDGEKLVSGSSDGSI 395
+ Q +G ++ S R+ + H ++G + L LVSG++D ++
Sbjct: 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTV 341
Query: 396 YFYNCRSSELERKIKA---YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442
++ ++ + + ++ ++ A + F+ N + + S +G V +++
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWD 388
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 29/127 (22%)
Query: 98 VAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTH 157
+AA V G I LL L V+ S+ R T +N+I+W P
Sbjct: 503 IAAGDVXGKI-----------LLYDLQSREVKTSRWAFR--------TSKINAISWKPAE 543
Query: 158 A---------HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC 208
L+A+ +D +I I++V R K+ + LN H VN++ W V S
Sbjct: 544 KGANEEEIEEDLVATGSLDTNIFIYSV-KRPXKIIKALNAHKDGVNNLLWETPSTLVSSG 602
Query: 209 GYDCSSR 215
C R
Sbjct: 603 ADACIKR 609
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-HSAA 192
G+L H++ VN +++ HLL + G + +W +QK R F H+ +
Sbjct: 695 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL--KLWDLNQKECRNTMFGHTNS 752
Query: 193 VNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--------------EELAVRVVK 238
VN ++S + SC D + RL DV E +S E+ V+
Sbjct: 753 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 812
Query: 239 FHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269
+ + + ++ +K L L+DI T + E
Sbjct: 813 WSADGDKIIVAAKNKVL--LFDIHTSGLLAE 841
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 161 LASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG--LFVLSCGYDCSSRLVD 218
+A+ D+ + IW+ S KL + HS VN ++ + L + + D +L D
Sbjct: 679 IATCSADKKVKIWD--SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 219 V-EKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG------KVAHEYI 271
+ +K F +V +F P++ L S + G LRLWD+R+ V ++
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 272 QSLGPILDVEFTI 284
S P DVE +
Sbjct: 796 SSEDPPEDVEVIV 808
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLF 247
H+ AV +SQ G + SCG D + ++ E G + + E V F ++S +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 248 LSGGSKGLLRLWDIRTGKVAHEY 270
K +++WD TGK+ H Y
Sbjct: 681 TCSADKK-VKIWDSATGKLVHTY 702
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 379 FSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438
FS DG+++ S +D ++ + + E IKA+E + AF + I +CS + V
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKV 688
Query: 439 SVYE 442
+++
Sbjct: 689 KIWD 692
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP-ILPNIIGSCSWN 435
C FS D E L S S+DG++ ++ RS+ ERK ++ + P + I+ CSW+
Sbjct: 756 CRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 814
Query: 436 GD 437
D
Sbjct: 815 AD 816
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--IETQSFREELAVRVVKFHPENSNL 246
H AV ++++ G ++S D ++ + + G + Q+ +E V F +
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSR 1064
Query: 247 FLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289
LS G +++W++ TG++ ++ G +L + + +F
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1107
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-HSAA 192
G+L H++ VN +++ HLL + G + +W +QK R F H+ +
Sbjct: 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL--KLWDLNQKECRNTMFGHTNS 745
Query: 193 VNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--------------EELAVRVVK 238
VN ++S + SC D + RL DV E +S E+ V+
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 239 FHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269
+ + + ++ +K L L+DI T + E
Sbjct: 806 WSADGDKIIVAAKNKVL--LFDIHTSGLLAE 834
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 161 LASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG--LFVLSCGYDCSSRLVD 218
+A+ D+ + IW+ S KL + HS VN ++ + L + + D +L D
Sbjct: 672 IATCSADKKVKIWD--SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 219 V-EKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG------KVAHEYI 271
+ +K F +V +F P++ L S + G LRLWD+R+ V ++
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 272 QSLGPILDVEFTI 284
S P DVE +
Sbjct: 789 SSEDPPEDVEVIV 801
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLF 247
H+ AV +SQ G + SCG D + ++ E G + + E V F ++S +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 248 LSGGSKGLLRLWDIRTGKVAHEY 270
K +++WD TGK+ H Y
Sbjct: 674 TCSADKK-VKIWDSATGKLVHTY 695
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 379 FSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438
FS DG+++ S +D ++ + + E IKA+E + AF + I +CS + V
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKV 681
Query: 439 SVYE 442
+++
Sbjct: 682 KIWD 685
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP-ILPNIIGSCSWN 435
C FS D E L S S+DG++ ++ RS+ ERK ++ + P + I+ CSW+
Sbjct: 749 CRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807
Query: 436 GD 437
D
Sbjct: 808 AD 809
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--IETQSFREELAVRVVKFHPENSNL 246
H AV ++++ G ++S D ++ + + G + Q+ +E V F +
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSR 1057
Query: 247 FLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289
LS G +++W++ TG++ ++ G +L + + +F
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1100
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS-RDQKLARVLNFHSAAVNDVKWSQQG 202
H+ +V + WSP + ASA D++I IWNV + + +K V + W++Q
Sbjct: 238 HSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 203 LFVLSCGYDCSSRLVDVEKG-IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
L +S + V+ E G I+ + A+ + + LF S ++G + WDI
Sbjct: 297 LVSISA--NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDI 353
Query: 262 RTG 264
TG
Sbjct: 354 STG 356
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQQG 202
HT V ++WSP + LA+ +D S+ +WN+ + H+ ++VN V W +
Sbjct: 535 HTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE- 592
Query: 203 LFVLSCGYDCSSRLVDV 219
++S G D + + +V
Sbjct: 593 TTIVSAGQDSNIKFWNV 609
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 330 VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV--SGFPIKCSFSLDGEKLV 387
VR++P F + I +++ + F+ V SG ++S DG K+
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 388 SGSSDGSIYFYNCRSSELERKI 409
S S+D +I +N + ++E+ I
Sbjct: 256 SASADKTIKIWNVATLKVEKTI 277
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 163 SAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222
SA MD +I IW++ + +L L H+A V ++ S + F++S D S R D
Sbjct: 327 SASMDTTIRIWDL--ENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDY 382
Query: 223 IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271
S+ + F+ ++ L GS+ ++++R+GK+ H I
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANI 429
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 23/164 (14%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
H V+S++ P H++ SA D++I +W V + + H V V+ +Q G
Sbjct: 191 HDHNVSSVSIMPNGDHIV-SASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 204 FVLSCGYDCSSRLVDVEKGIETQSFREEL-AVRVVKFHPENSN----------------- 245
+ SC D + R+ V RE V + + PE+S
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 246 --LFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287
LSG +++WD+ TG + + V F GK
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 351
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 141 LCHHTKAVNSINWSPTHAH-------------------LLASAGMDQSICIWNVWSRDQK 181
L H V I+W+P ++ L S D++I +W+V S
Sbjct: 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-STGMC 330
Query: 182 LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV--EKGIETQSFREELAVRVVKF 239
L ++ H V V + G F+LSC D + R+ D ++ ++T + E V + F
Sbjct: 331 LMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDF 388
Query: 240 HPENSNLFLSGGSKGLLRLWDIR 262
H + + ++G +++W+ R
Sbjct: 389 H-KTAPYVVTGSVDQTVKVWECR 410
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 158 AHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215
+ +A G+D I+N+ +R+ +++R L H+ ++ ++ V S G D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 216 LVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274
L D+E G +T +F V + P+ + LF+SG +LWD+R G +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 275 GPILDVEFTINGKQF 289
I + F NG F
Sbjct: 227 SDINAICFFPNGNAF 241
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
LFV S D S++L DV +G+ Q+F E + + F P N N F +G RL+D+
Sbjct: 198 LFV-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
Query: 262 RTGK--VAHEYIQSLGPILDVEFTINGK 287
R + + + + + I V F+ +G+
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR 283
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
LFV S D S++L DV +G+ Q+F E + + F P N N F +G RL+D+
Sbjct: 198 LFV-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
Query: 262 RTGK--VAHEYIQSLGPILDVEFTINGK 287
R + + + + + I V F+ +G+
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR 283
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 158 AHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215
+ +A G+D I+N+ +R+ +++R L H+ ++ ++ V S G D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 216 LVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274
L D+E G +T +F V + P+ + LF+SG +LWD+R G +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 275 GPILDVEFTINGKQF 289
I + F NG F
Sbjct: 227 SDINAICFFPNGNAF 241
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 42/216 (19%)
Query: 242 ENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXX 301
ENS ++G L+++W R + LD+++++ G Q
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDER------------LDLQWSLEGHQLG----------- 82
Query: 302 XXXIVVWDVSREVPLSKQVYVEAYT----------CPCVRHHPFDPYFVAQS-NGNYIAI 350
+V D+S +P++ ++A+ + P D + +A S + Y+A
Sbjct: 83 ---VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 351 FSSTPP---FRLDKFKRYESHGVSG-FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE 406
+ F ++ K+ S G F + ++S DG+ L SG+ DG I ++ + +L
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 407 RKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442
++ + + F P ++ + S +G + +Y+
Sbjct: 200 HTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYD 234
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 373 FPIK-CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423
PI+ +FS D + LV+ S DG I Y+ + + L + + ++VAF P
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 126 SHVRRSKI----PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK 181
+HV + I G+ +L K + SI +SP +L AS +D I I+++ K
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL-ASGAIDGIINIFDI--ATGK 197
Query: 182 LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA-VRVVKFH 240
L L H+ + + +S +++ D ++ DV+ + + V V F
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 241 PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289
P++++ F+S S +++WD+ T H + + V++ NG +
Sbjct: 258 PDDTH-FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKI 305
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
LFV S D S++L DV +G+ Q+F E + + F P N N F +G RL+D+
Sbjct: 198 LFV-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
Query: 262 RTGK--VAHEYIQSLGPILDVEFTINGK 287
R + + + + + I V F+ +G+
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR 283
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 158 AHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215
+ +A G+D I+N+ +R+ +++R L H+ ++ ++ V S G D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 216 LVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274
L D+E G +T +F V + P+ + LF+SG +LWD+R G +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 275 GPILDVEFTINGKQF 289
I + F NG F
Sbjct: 227 SDINAICFFPNGNAF 241
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 158 AHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215
+ +A G+D I+N+ +R+ +++R L H+ ++ ++ V S G D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 216 LVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274
L D+E G +T +F V + P+ + LF+SG +LWD+R G +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 275 GPILDVEFTINGKQF 289
I + F NG F
Sbjct: 227 SDINAICFFPNGNAF 241
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
LFV S D S++L DV +G+ Q+F E + + F P N N F +G RL+D+
Sbjct: 198 LFV-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 255
Query: 262 RTGK--VAHEYIQSLGPILDVEFTINGK 287
R + + + + + I V F+ +G+
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR 283
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261
LFV S D S++L DV +G+ Q+F E + + F P N N F +G RL+D+
Sbjct: 209 LFV-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL 266
Query: 262 RTGK--VAHEYIQSLGPILDVEFTINGK 287
R + + + + + I V F+ +G+
Sbjct: 267 RADQELMTYSHDNIICGITSVSFSKSGR 294
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 158 AHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215
+ +A G+D I+N+ +R+ +++R L H+ ++ ++ V S G D +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 178
Query: 216 LVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274
L D+E G +T +F V + P+ + LF+SG +LWD+R G +
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 275 GPILDVEFTINGKQF 289
I + F NG F
Sbjct: 238 SDINAICFFPNGNAF 252
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 136 RLSTALCHHTKAVNSINWS-PTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
+L L H V ++W+ P +LAS D + IW + V HSA+VN
Sbjct: 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 105
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEKGIETQSF---REELAVRVVKFHP-------- 241
V+W+ + G +L D +V+ ++ T + V + P
Sbjct: 106 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165
Query: 242 ----ENSNLFLSGGSKGLLRLW 259
+ S F++GG+ L+++W
Sbjct: 166 HNGTKESRKFVTGGADNLVKIW 187
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ 200
+ H V ++W + H+L+S +I +V + ++ L HS+ V + W
Sbjct: 172 MAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIG-TLQGHSSEVCGLAWRS 227
Query: 201 QGLFVLSCGYDCSSRLVDVEKGI-ETQSFREELAVRVVKFHPENSNLFLSGGSK--GLLR 257
GL + S G D ++ D I + AV+ V + P SNL +GG +
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 258 LWDIRTG 264
W+ TG
Sbjct: 288 FWNAATG 294
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAG--MDQSICIWN 174
RS IP T +H AV ++ W P ++LLA+ G MD+ I WN
Sbjct: 247 RSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 136 RLSTALCHHTKAVNSINWS-PTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
+L L H V ++W+ P +LAS D + IW + V HSA+VN
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEKGIETQSF---REELAVRVVKFHP-------- 241
V+W+ + G +L D +V+ ++ T + V + P
Sbjct: 104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 242 ----ENSNLFLSGGSKGLLRLW 259
+ S F++GG+ L+++W
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW 185
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 135 GRLSTALCH--HTKAVNSINWSP-THAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSA 191
GR S H H+ +VNS+ W+P + LL A D + + +++ H+
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 192 AVNDVKWS 199
VN W+
Sbjct: 147 GVNSASWA 154
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 136 RLSTALCHHTKAVNSINWS-PTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
+L L H V ++W+ P +LAS D + IW + V HSA+VN
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEKGIETQSF---REELAVRVVKFHP-------- 241
V+W+ + G +L D +V+ ++ T + V + P
Sbjct: 104 SVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 242 ----ENSNLFLSGGSKGLLRLW 259
+ S F++GG+ L+++W
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 136 RLSTALCHHTKAVNSINWS-PTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
+L L H V ++W+ P +LAS D + IW + V HSA+VN
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEKGIETQSF---REELAVRVVKFHP-------- 241
V+W+ + G +L D +V+ ++ T + V + P
Sbjct: 104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 242 ----ENSNLFLSGGSKGLLRLW 259
+ S F++GG+ L+++W
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW 185
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
H + + + P+ L++S+ D + IW+V +D R L H A V D+ +G
Sbjct: 135 HVSEITKLKFFPSGEALISSS-QDMQLKIWSV--KDGSNPRTLIGHRATVTDIAIIDRGR 191
Query: 204 FVLSCGYDCSSRLVDVEKGIETQSFR 229
VLS D + RL + G +F
Sbjct: 192 NVLSASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
H + + + P+ L++S+ D + IW+V +D R L H A V D+ +G
Sbjct: 138 HVSEITKLKFFPSGEALISSS-QDMQLKIWSV--KDGSNPRTLIGHRATVTDIAIIDRGR 194
Query: 204 FVLSCGYDCSSRLVDVEKGIETQSFR 229
VLS D + RL + G +F
Sbjct: 195 NVLSASLDGTIRLWECGTGTTIHTFN 220
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267
A+ +KFHP + NL LS LRLW+I+T +
Sbjct: 153 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 187
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV--LNFHSAAVNDVKWSQQ 201
H A+N + + P +LL S D ++ +WN+ D +A + H V +
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 202 GLFVLSCGYDCSSRLVDVEKGIETQSFRE 230
G ++SCG D S +L + + +E
Sbjct: 209 GEKIMSCGMDHSLKLWRINSKRMMNAIKE 237
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267
A+ +KFHP + NL LS LRLW+I+T +
Sbjct: 116 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 150
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV--LNFHSAAVNDVKWSQQ 201
H A+N + + P +LL S D ++ +WN+ D +A + H V +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 202 GLFVLSCGYDCSSRLVDVEKGIETQSFRE 230
G ++SCG D S +L + + +E
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIKE 200
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267
A+ +KFHP + NL LS LRLW+I+T +
Sbjct: 116 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 150
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV--LNFHSAAVNDVKWSQQ 201
H A+N + + P +LL S D ++ +WN+ D +A + H V +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 202 GLFVLSCGYDCSSRLVDVEKGIETQSFRE 230
G ++SCG D S +L + + +E
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIKE 200
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267
A+ +KFHP + NL LS LRLW+I+T +
Sbjct: 112 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 146
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV--LNFHSAAVNDVKWSQQ 201
H A+N + + P +LL S D ++ +WN+ D +A + H V +
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 202 GLFVLSCGYDCSSRLVDVEKGIETQSFRE 230
G ++SCG D S +L + + +E
Sbjct: 168 GEKIMSCGMDHSLKLWRINSKRMMNAIKE 196
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267
A+ +KFHP + NL LS LRLW+I+T +
Sbjct: 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV--LNFHSAAVNDVKWSQQ 201
H A+N + + P +LL S D ++ +WN+ D +A + H V +
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 202 GLFVLSCGYDCSSRLVDVEKGIETQSFRE 230
G ++SCG D S +L + + +E
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKE 201
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 136 RLSTALCHHTKAVNSINWS-PTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN 194
+L L H V ++W+ P +LAS D + IW + V HSA+VN
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVN 103
Query: 195 DVKWS--QQGLFVLSCGYDCSSRLVDVEKGIETQSF---REELAVRVVKFHP-------- 241
V+W+ + G +L D +V+ ++ T + V + P
Sbjct: 104 SVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 242 ----ENSNLFLSGGSKGLLRLW 259
+ S F++GG+ L+++W
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW 185
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 163 SAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222
SA D +I IW++ + +L L H+A V ++ S + F++S D S R D
Sbjct: 327 SASXDTTIRIWDL--ENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDY 382
Query: 223 IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271
S+ + F+ ++ L GS+ ++++R+GK+ H I
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANI 429
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 5/134 (3%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF--HSAAVN 194
L TA V + W L+AS ++ +W + ++ L H V
Sbjct: 86 LCTAGVQTEAGVTDVAWVSEKGILVASDS--GAVELWEILEKESLLVNKFAKYEHDDIVK 143
Query: 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA-VRVVKFHPENSNLFLSGGSK 253
+ G +S G D S ++ D+ + +S+ + V V P +FLS G
Sbjct: 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED 203
Query: 254 GLLRLWDIRTGKVA 267
G + LWD R K A
Sbjct: 204 GRILLWDTRKPKPA 217
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 230 EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV 266
+ + + V HP ++ +GG G+L +WD+R G +
Sbjct: 235 DRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 386 LVSGSSDGSIYFYNCRSSELERKI-KAYEQACIDVAFHPILPNIIGSCSWNGDV 438
+ +G DG + ++ R + + KA+E +V FHP P + +CS +G +
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 230 EELA--VRVVKFHPENSNLFLSGGSKGLLRLWDIR 262
EEL + +FHP + N F+ SKG +RL D+R
Sbjct: 223 EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 383 GEKLVSGSSDGSIYFYNCRSSE--LERKIKAYEQACIDVAF-HPILPNIIGSCSWNGDVS 439
G +L + SSD S+ ++ R+ L ++ +E VA+ HP+ NI+ SCS++ V
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 440 VY 441
++
Sbjct: 85 IW 86
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 161 LASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSRLVD 218
LA+ D+S+ I++V + Q L L H V V W+ G + SC YD +
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 219 VEKGIETQSFR---EELAVRVVKFHPENSNLFLS-GGSKGLLRL--------WDIRTGKV 266
E G +S + +V V + P + L L+ G S G + L W+++
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147
Query: 267 AH 268
AH
Sbjct: 148 AH 149
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 144 HTKAVNSINWS-PTHAHLLASAGMDQSICIW----NVWSRDQKLARVLNFHSAAVNDVKW 198
H V + W+ P + ++LAS D+ + IW W + + A H ++VN V W
Sbjct: 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG----HDSSVNSVCW 111
Query: 199 SQQGL-FVLSCG 209
+ +L+CG
Sbjct: 112 APHDYGLILACG 123
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS 273
V V +F+ +NS + + G SK L +W+ G + +I S
Sbjct: 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS 302
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
+T L + A+N+ NW +AS G+D ++N W + +K F V ++
Sbjct: 334 FATKLVDYDPAINNGNW-----QWIASTGVDYMFRVFNPWKQQEKFDPEAKFIKEWVEEL 388
Query: 197 K 197
K
Sbjct: 389 K 389
>pdb|2FT9|A Chain A, Crystal Structure Of Axolotl (ambystoma Mexicanum) Liver
Bile Acid-binding Protein Bound To Cholic Acid
pdb|2FTB|A Chain A, Crystal Structure Of Axolotl (Ambystoma Mexicanum) Liver
Bile Acid-Binding Protein Bound To Oleic Acid
Length = 125
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 336 DPYFVAQSNGNYIAIFSSTP------PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG 389
+P Q NG+ + S TP F + K S G G IKC+ L+G KLVS
Sbjct: 35 NPIIEIQQNGDNFVVTSKTPNQSVTNSFTIGKEAEITSMG--GKKIKCTVVLEGGKLVSK 92
Query: 390 SSDGS 394
+ S
Sbjct: 93 TDQFS 97
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA-VRVVKFHPENSNLF 247
H V+ V G +S D ++ D+ + + S+R A V V P ++F
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 248 LSGGSKGLLRLWDIRTGKVAHE 269
LS + LWD R K A +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQ 207
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 34/91 (37%)
Query: 84 IPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCH 143
+P + + V +L I + L Q I + LR + RS +L
Sbjct: 11 VPRGSGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASP 70
Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWN 174
+ V S+ W PTH +A I +W+
Sbjct: 71 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVL 206
A WS +++A D I ++V S + + ++ H +++D+++S + +
Sbjct: 177 AATVAGWSTKGKYIIAGH-KDGKISKYDV-SNNYEYVDSIDLHEKSISDMQFSPDLTYFI 234
Query: 207 SCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK 253
+ D +S LVDV + + + + P + L GG +
Sbjct: 235 TSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 98 VAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTH 157
V +L I + L Q I + LR + RS +L + V S+ W PTH
Sbjct: 26 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTH 85
Query: 158 AHLLASAGMDQSICIWN 174
+A I +W+
Sbjct: 86 PTTVAVGSKGGDIILWD 102
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 136 RLSTALCHHTKAVNSINW-SPTHAHLLASAGMDQSICIWN--------VWSRDQKLARVL 186
LS + H ++ +I+W SP + ++ASA D+++ +W R KL L
Sbjct: 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC-TL 106
Query: 187 NFHSAAVNDVKW--SQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPEN 243
N ++ VK+ + GL + G D RL D + + +S+ ++V+ P N
Sbjct: 107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 121 RHLPKSHVRRSKIPGRLSTALCHHTKAVNSINW-SPTHAHLLASAGMDQSICIWN----- 174
+H+ + + LS + H ++ +I+W SP + ++ASA D+++ +W
Sbjct: 31 QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 90
Query: 175 ---VWSRDQKLARVLNFHSAAVNDVKW--SQQGLFVLSCGYDCSSRLVDVEKGIETQSFR 229
R KL LN ++ VK+ + GL + G D RL D + + +S+
Sbjct: 91 EECSGRRWNKLC-TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 149
Query: 230 EELAVRVVKFHPEN 243
++V+ P N
Sbjct: 150 LTSEMKVLSIPPAN 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,976,190
Number of Sequences: 62578
Number of extensions: 560160
Number of successful extensions: 1588
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 311
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)