Query 013475
Match_columns 442
No_of_seqs 895 out of 2362
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 04:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0282 mRNA splicing factor [ 100.0 1.9E-53 4.2E-58 363.7 20.4 307 128-442 197-503 (503)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-51 4.5E-56 341.3 23.5 309 102-442 129-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3.8E-50 8.2E-55 333.8 26.8 294 132-442 102-437 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-48 3.3E-53 328.2 22.8 285 140-442 170-458 (459)
5 KOG0286 G-protein beta subunit 100.0 2.1E-46 4.6E-51 301.1 32.4 291 135-442 45-343 (343)
6 KOG0293 WD40 repeat-containing 100.0 4.8E-44 1E-48 300.3 24.4 317 110-441 189-510 (519)
7 KOG0279 G protein beta subunit 100.0 3.9E-42 8.5E-47 274.8 31.6 289 136-442 6-311 (315)
8 KOG0265 U5 snRNP-specific prot 100.0 1E-42 2.2E-47 280.9 27.2 293 136-440 38-334 (338)
9 KOG0315 G-protein beta subunit 100.0 8.1E-42 1.8E-46 268.6 28.8 270 158-442 10-286 (311)
10 KOG0285 Pleiotropic regulator 100.0 2.2E-41 4.8E-46 279.4 26.7 300 123-442 129-437 (460)
11 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-43 1.8E-47 293.8 18.2 256 128-399 199-458 (459)
12 KOG0315 G-protein beta subunit 100.0 8E-41 1.7E-45 263.0 27.2 277 132-422 27-309 (311)
13 KOG0295 WD40 repeat-containing 100.0 6.3E-41 1.4E-45 277.3 25.1 290 135-442 98-404 (406)
14 KOG0284 Polyadenylation factor 100.0 2E-41 4.3E-46 284.2 18.9 283 142-442 93-378 (464)
15 KOG0316 Conserved WD40 repeat- 100.0 8.2E-40 1.8E-44 255.3 26.6 289 132-441 4-296 (307)
16 KOG0296 Angio-associated migra 100.0 1.4E-39 3.1E-44 269.4 29.4 289 135-442 54-396 (399)
17 KOG0266 WD40 repeat-containing 100.0 1.6E-39 3.4E-44 302.6 32.5 293 137-442 150-452 (456)
18 KOG0645 WD40 repeat protein [G 100.0 1.1E-38 2.3E-43 254.2 31.7 288 136-442 5-309 (312)
19 KOG0273 Beta-transducin family 100.0 2.6E-39 5.6E-44 276.3 30.1 277 145-442 235-521 (524)
20 KOG0263 Transcription initiati 100.0 1.9E-40 4.1E-45 300.7 23.4 255 130-442 363-647 (707)
21 cd00200 WD40 WD40 domain, foun 100.0 3.6E-38 7.8E-43 280.0 37.2 287 138-442 2-289 (289)
22 KOG0279 G protein beta subunit 100.0 9.5E-39 2E-43 255.5 27.0 255 134-401 52-313 (315)
23 KOG0318 WD40 repeat stress pro 100.0 6.8E-38 1.5E-42 271.1 33.4 292 134-442 179-558 (603)
24 KOG0273 Beta-transducin family 100.0 4.5E-38 9.8E-43 268.7 29.3 294 132-442 166-480 (524)
25 KOG0275 Conserved WD40 repeat- 100.0 6.1E-40 1.3E-44 267.8 15.9 296 133-442 200-507 (508)
26 KOG0643 Translation initiation 100.0 1.5E-37 3.2E-42 247.2 23.9 284 140-441 5-314 (327)
27 KOG0278 Serine/threonine kinas 100.0 1.1E-38 2.3E-43 251.3 17.0 283 139-442 8-295 (334)
28 PLN00181 protein SPA1-RELATED; 100.0 5.2E-36 1.1E-40 299.6 38.7 288 141-442 479-791 (793)
29 KOG0286 G-protein beta subunit 100.0 2E-36 4.3E-41 243.8 25.9 252 134-399 86-343 (343)
30 KOG0291 WD40-repeat-containing 100.0 1.4E-35 3.1E-40 267.2 32.8 283 142-442 262-548 (893)
31 KOG0291 WD40-repeat-containing 100.0 2.7E-35 5.8E-40 265.4 31.2 296 132-442 132-506 (893)
32 KOG1407 WD40 repeat protein [F 100.0 2E-35 4.3E-40 234.3 26.7 279 139-435 14-293 (313)
33 KOG0263 Transcription initiati 100.0 3.4E-36 7.3E-41 273.2 24.7 210 135-356 441-651 (707)
34 KOG0319 WD40-repeat-containing 100.0 4.2E-36 9E-41 270.1 24.9 292 134-442 312-617 (775)
35 KOG0288 WD40 repeat protein Ti 100.0 1.2E-36 2.6E-41 255.9 17.6 298 129-442 159-459 (459)
36 KOG0276 Vesicle coat complex C 100.0 3.3E-35 7.2E-40 259.5 27.2 285 138-440 6-295 (794)
37 KOG0292 Vesicle coat complex C 100.0 2.1E-35 4.6E-40 270.3 26.4 287 139-441 3-318 (1202)
38 KOG0281 Beta-TrCP (transducin 100.0 1.1E-36 2.4E-41 250.9 15.8 267 144-442 196-475 (499)
39 KOG0313 Microtubule binding pr 100.0 5.1E-35 1.1E-39 243.7 25.4 287 134-442 95-416 (423)
40 KOG0319 WD40-repeat-containing 100.0 4.3E-35 9.4E-40 263.6 26.7 291 135-442 94-575 (775)
41 KOG1446 Histone H3 (Lys4) meth 100.0 8E-34 1.7E-38 231.8 31.7 286 137-441 6-300 (311)
42 KOG0284 Polyadenylation factor 100.0 2.4E-36 5.2E-41 253.8 16.3 247 138-401 131-380 (464)
43 KOG0283 WD40 repeat-containing 100.0 2.7E-35 5.8E-40 269.6 24.3 251 138-401 259-576 (712)
44 KOG0640 mRNA cleavage stimulat 100.0 9.1E-35 2E-39 236.1 22.5 294 135-441 102-423 (430)
45 KOG0318 WD40 repeat stress pro 100.0 8.2E-34 1.8E-38 245.9 29.8 295 135-442 49-348 (603)
46 KOG0306 WD40-repeat-containing 100.0 2.9E-34 6.3E-39 258.6 26.2 290 135-442 97-620 (888)
47 KOG0266 WD40 repeat-containing 100.0 9.7E-34 2.1E-38 263.8 28.9 251 137-401 195-454 (456)
48 KOG0295 WD40 repeat-containing 100.0 1.1E-34 2.4E-39 240.4 19.7 253 132-400 137-405 (406)
49 KOG0772 Uncharacterized conser 100.0 6.5E-34 1.4E-38 246.0 24.8 299 132-441 154-484 (641)
50 KOG0285 Pleiotropic regulator 100.0 1.6E-34 3.5E-39 239.0 19.8 246 180-442 141-387 (460)
51 KOG0268 Sof1-like rRNA process 100.0 4E-35 8.7E-40 242.9 16.2 286 135-442 56-343 (433)
52 KOG0645 WD40 repeat protein [G 100.0 3.3E-33 7.1E-38 222.9 26.0 250 136-401 51-311 (312)
53 KOG0277 Peroxisomal targeting 100.0 2E-34 4.3E-39 227.8 18.7 244 144-442 59-307 (311)
54 KOG0316 Conserved WD40 repeat- 100.0 1.6E-33 3.6E-38 220.2 20.4 244 181-442 8-255 (307)
55 KOG0647 mRNA export protein (c 100.0 1.6E-32 3.4E-37 222.3 26.6 278 143-432 25-311 (347)
56 KOG0306 WD40-repeat-containing 100.0 7E-33 1.5E-37 249.8 27.2 283 139-442 367-662 (888)
57 KOG0276 Vesicle coat complex C 100.0 2.3E-33 5E-38 247.9 23.3 245 184-442 7-255 (794)
58 PTZ00421 coronin; Provisional 100.0 3.4E-31 7.3E-36 245.5 33.9 271 144-425 19-315 (493)
59 KOG0639 Transducin-like enhanc 100.0 7.3E-32 1.6E-36 232.7 26.7 280 143-442 417-702 (705)
60 KOG0973 Histone transcription 100.0 1.2E-31 2.7E-36 251.9 27.6 284 143-441 11-352 (942)
61 KOG0310 Conserved WD40 repeat- 100.0 1.5E-31 3.2E-36 230.1 25.5 279 144-440 25-305 (487)
62 PLN00181 protein SPA1-RELATED; 100.0 6.1E-31 1.3E-35 263.3 33.5 261 167-442 457-736 (793)
63 KOG0294 WD40 repeat-containing 100.0 2.4E-31 5.2E-36 216.8 24.4 243 134-442 32-279 (362)
64 cd00200 WD40 WD40 domain, foun 100.0 9.2E-31 2E-35 232.3 30.2 244 184-442 3-247 (289)
65 KOG0305 Anaphase promoting com 100.0 4.2E-31 9.1E-36 236.0 27.7 270 150-442 182-459 (484)
66 KOG0282 mRNA splicing factor [ 100.0 1.1E-32 2.5E-37 236.6 16.2 248 180-442 204-460 (503)
67 KOG0265 U5 snRNP-specific prot 100.0 2.2E-31 4.8E-36 215.5 22.4 249 135-399 80-336 (338)
68 KOG0281 Beta-TrCP (transducin 100.0 1.2E-32 2.5E-37 227.2 15.0 262 120-405 211-481 (499)
69 KOG1036 Mitotic spindle checkp 100.0 2.2E-30 4.7E-35 210.8 27.7 272 145-433 13-293 (323)
70 KOG0274 Cdc4 and related F-box 100.0 2E-30 4.3E-35 240.6 30.7 271 143-442 206-480 (537)
71 KOG0292 Vesicle coat complex C 100.0 1.4E-30 3E-35 239.0 28.5 286 135-437 41-389 (1202)
72 KOG0289 mRNA splicing factor [ 100.0 1.9E-30 4.1E-35 220.1 26.0 279 146-441 220-503 (506)
73 KOG0641 WD40 repeat protein [G 100.0 5.2E-29 1.1E-33 194.0 31.5 289 137-441 25-346 (350)
74 KOG0289 mRNA splicing factor [ 100.0 1.3E-30 2.9E-35 221.0 24.3 252 135-400 251-505 (506)
75 KOG0299 U3 snoRNP-associated p 100.0 1.8E-30 4E-35 221.8 24.7 286 138-436 135-448 (479)
76 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-29 3.9E-34 206.4 29.4 249 181-442 5-260 (311)
77 KOG0278 Serine/threonine kinas 100.0 7.6E-32 1.6E-36 212.7 14.7 255 132-406 46-302 (334)
78 KOG1407 WD40 repeat protein [F 100.0 1.3E-30 2.8E-35 207.1 20.7 241 184-440 14-257 (313)
79 KOG1273 WD40 repeat protein [G 100.0 4.2E-30 9.1E-35 209.5 24.2 297 132-442 12-320 (405)
80 PTZ00421 coronin; Provisional 100.0 2.8E-29 6E-34 232.8 33.0 235 140-382 70-314 (493)
81 PTZ00420 coronin; Provisional 100.0 5.3E-29 1.1E-33 231.9 34.6 249 164-425 50-318 (568)
82 KOG0310 Conserved WD40 repeat- 100.0 3.3E-30 7.1E-35 221.9 24.0 247 137-401 60-309 (487)
83 KOG0296 Angio-associated migra 100.0 2.5E-29 5.4E-34 208.9 27.7 256 134-401 95-398 (399)
84 KOG0650 WD40 repeat nucleolar 100.0 2.5E-29 5.5E-34 221.5 29.1 318 103-441 359-732 (733)
85 KOG0283 WD40 repeat-containing 100.0 2.6E-30 5.6E-35 237.1 23.1 246 183-442 259-574 (712)
86 PTZ00420 coronin; Provisional 100.0 3.8E-29 8.2E-34 232.9 31.1 240 136-383 65-318 (568)
87 KOG4283 Transcription-coupled 100.0 2.1E-29 4.5E-34 203.7 24.9 291 142-441 40-362 (397)
88 KOG0277 Peroxisomal targeting 100.0 6E-30 1.3E-34 202.5 20.9 238 149-442 12-263 (311)
89 KOG0264 Nucleosome remodeling 100.0 7.2E-30 1.6E-34 218.2 21.7 247 142-442 121-402 (422)
90 KOG2096 WD40 repeat protein [G 100.0 7.3E-29 1.6E-33 202.6 25.7 292 137-441 78-399 (420)
91 KOG0308 Conserved WD40 repeat- 100.0 3.6E-30 7.7E-35 228.9 19.0 284 143-441 19-324 (735)
92 KOG0300 WD40 repeat-containing 100.0 2.3E-29 5E-34 205.5 21.0 291 134-442 137-474 (481)
93 KOG1332 Vesicle coat complex C 100.0 1.4E-29 3E-34 199.3 18.6 250 142-401 8-286 (299)
94 KOG2055 WD40 repeat protein [G 100.0 6.5E-29 1.4E-33 212.4 24.1 285 145-442 213-510 (514)
95 KOG0288 WD40 repeat protein Ti 100.0 8.9E-30 1.9E-34 214.7 18.6 246 136-398 210-458 (459)
96 KOG0274 Cdc4 and related F-box 100.0 9.7E-29 2.1E-33 229.4 26.7 254 134-412 237-493 (537)
97 KOG0313 Microtubule binding pr 100.0 9.5E-29 2E-33 206.4 23.8 263 124-401 123-418 (423)
98 KOG0305 Anaphase promoting com 100.0 8E-29 1.7E-33 221.5 24.9 246 140-403 212-463 (484)
99 KOG0293 WD40 repeat-containing 100.0 2.5E-29 5.5E-34 212.0 20.3 247 181-442 215-468 (519)
100 KOG0301 Phospholipase A2-activ 100.0 1.5E-28 3.2E-33 220.2 25.7 279 135-441 4-285 (745)
101 KOG0973 Histone transcription 100.0 5.6E-29 1.2E-33 234.1 23.7 259 135-403 59-357 (942)
102 KOG1274 WD40 repeat protein [G 100.0 6.5E-28 1.4E-32 222.7 29.8 279 142-440 10-296 (933)
103 KOG1408 WD40 repeat protein [F 100.0 6.4E-29 1.4E-33 223.2 22.3 293 140-442 364-711 (1080)
104 KOG0643 Translation initiation 100.0 1.6E-27 3.5E-32 190.2 23.9 240 185-434 5-252 (327)
105 KOG0640 mRNA cleavage stimulat 100.0 1.3E-28 2.7E-33 200.5 17.8 253 135-401 162-426 (430)
106 KOG0647 mRNA export protein (c 100.0 1.3E-27 2.9E-32 193.9 23.2 238 188-442 25-279 (347)
107 KOG0269 WD40 repeat-containing 100.0 2.4E-28 5.1E-33 221.5 20.1 281 146-439 40-335 (839)
108 KOG0321 WD40 repeat-containing 100.0 9.2E-28 2E-32 213.2 23.1 285 151-442 55-389 (720)
109 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3E-26 6.5E-31 205.3 32.9 270 158-442 1-277 (300)
110 KOG0275 Conserved WD40 repeat- 100.0 3.3E-28 7.1E-33 199.4 17.5 239 189-441 212-464 (508)
111 KOG4328 WD40 protein [Function 100.0 1.9E-27 4.2E-32 203.3 22.4 298 136-441 177-492 (498)
112 KOG0772 Uncharacterized conser 100.0 8.6E-28 1.9E-32 208.3 19.7 252 182-442 159-443 (641)
113 KOG0268 Sof1-like rRNA process 100.0 1.8E-28 3.9E-33 203.6 14.8 256 128-404 91-348 (433)
114 KOG0308 Conserved WD40 repeat- 100.0 3.5E-28 7.5E-33 216.3 16.9 314 103-442 40-391 (735)
115 KOG1539 WD repeat protein [Gen 100.0 5.7E-26 1.2E-30 207.8 30.1 283 146-442 160-604 (910)
116 KOG0641 WD40 repeat protein [G 100.0 1.2E-25 2.5E-30 175.4 27.0 254 135-401 79-349 (350)
117 KOG1539 WD repeat protein [Gen 100.0 5.8E-26 1.3E-30 207.7 29.1 288 135-441 234-645 (910)
118 KOG1036 Mitotic spindle checkp 100.0 3E-26 6.5E-31 186.8 24.2 236 189-442 12-260 (323)
119 KOG0646 WD40 repeat protein [G 100.0 7.2E-27 1.6E-31 200.3 20.9 255 159-425 51-331 (476)
120 KOG0299 U3 snoRNP-associated p 100.0 1.9E-26 4.2E-31 197.4 21.6 234 142-390 199-444 (479)
121 KOG1034 Transcriptional repres 100.0 3.4E-26 7.4E-31 187.8 22.0 292 140-442 33-381 (385)
122 KOG0300 WD40 repeat-containing 100.0 1.4E-26 3E-31 189.3 19.5 257 134-403 179-478 (481)
123 KOG0269 WD40 repeat-containing 99.9 3.4E-27 7.3E-32 214.1 16.0 246 147-403 89-342 (839)
124 KOG2445 Nuclear pore complex c 99.9 3.6E-25 7.9E-30 180.3 24.8 245 187-442 10-316 (361)
125 KOG1332 Vesicle coat complex C 99.9 2.7E-26 5.8E-31 180.9 17.4 245 186-441 7-283 (299)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-24 6.9E-29 192.2 33.3 268 135-423 21-300 (300)
127 KOG0267 Microtubule severing p 99.9 1.3E-27 2.9E-32 215.0 10.7 237 139-435 22-259 (825)
128 KOG0646 WD40 repeat protein [G 99.9 2.5E-25 5.4E-30 191.0 23.0 261 164-442 13-305 (476)
129 KOG0264 Nucleosome remodeling 99.9 8.3E-26 1.8E-30 193.4 19.2 214 135-355 167-405 (422)
130 KOG1408 WD40 repeat protein [F 99.9 3.1E-25 6.7E-30 199.7 23.6 285 148-442 327-669 (1080)
131 KOG2106 Uncharacterized conser 99.9 9.1E-25 2E-29 189.2 25.5 292 136-442 278-624 (626)
132 KOG2106 Uncharacterized conser 99.9 6.5E-24 1.4E-28 183.9 29.4 284 134-441 143-474 (626)
133 KOG2048 WD40 repeat protein [G 99.9 9.1E-24 2E-28 189.3 30.4 279 142-440 22-315 (691)
134 KOG1063 RNA polymerase II elon 99.9 2.4E-24 5.3E-29 193.3 24.5 297 139-442 261-697 (764)
135 KOG0639 Transducin-like enhanc 99.9 3.6E-25 7.9E-30 191.6 16.3 238 145-400 465-703 (705)
136 KOG0302 Ribosome Assembly prot 99.9 4.6E-24 1E-28 178.5 22.2 250 136-437 142-432 (440)
137 KOG1063 RNA polymerase II elon 99.9 7E-24 1.5E-28 190.4 24.3 297 134-441 43-388 (764)
138 KOG1274 WD40 repeat protein [G 99.9 1.1E-23 2.5E-28 194.9 25.8 243 188-442 11-260 (933)
139 KOG0301 Phospholipase A2-activ 99.9 2.8E-24 6E-29 193.0 21.2 240 180-442 4-247 (745)
140 KOG0307 Vesicle coat complex C 99.9 3.4E-25 7.3E-30 209.9 14.9 281 149-441 10-324 (1049)
141 KOG4227 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 176.9 21.6 291 137-441 48-384 (609)
142 KOG2445 Nuclear pore complex c 99.9 4.8E-23 1E-27 168.0 24.2 275 142-423 10-342 (361)
143 KOG0650 WD40 repeat nucleolar 99.9 1.1E-23 2.4E-28 186.2 21.8 249 181-441 391-677 (733)
144 KOG4378 Nuclear protein COP1 [ 99.9 6.2E-24 1.3E-28 183.8 19.4 263 147-425 36-305 (673)
145 KOG2055 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 180.6 20.6 252 138-401 250-512 (514)
146 KOG1334 WD40 repeat protein [G 99.9 2.3E-24 5.1E-29 186.0 15.1 296 136-441 133-463 (559)
147 KOG2919 Guanine nucleotide-bin 99.9 6.6E-23 1.4E-27 168.3 22.5 273 148-435 52-361 (406)
148 KOG1538 Uncharacterized conser 99.9 2.8E-23 6.1E-28 185.9 22.1 272 147-442 14-291 (1081)
149 KOG1445 Tumor-specific antigen 99.9 7E-24 1.5E-28 188.7 18.0 137 136-273 70-212 (1012)
150 KOG2048 WD40 repeat protein [G 99.9 2.1E-22 4.5E-27 180.7 26.6 242 189-441 24-272 (691)
151 KOG1009 Chromatin assembly com 99.9 1.1E-22 2.5E-27 171.8 23.0 282 145-440 13-368 (434)
152 KOG0267 Microtubule severing p 99.9 5.1E-25 1.1E-29 198.6 8.8 199 137-347 62-261 (825)
153 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-23 7.5E-28 179.2 19.6 260 168-442 12-278 (673)
154 KOG0294 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 165.7 22.1 224 135-421 73-305 (362)
155 KOG0270 WD40 repeat-containing 99.9 4.5E-23 9.8E-28 176.1 18.3 238 158-406 192-454 (463)
156 KOG2096 WD40 repeat protein [G 99.9 2.4E-22 5.2E-27 164.8 21.6 248 183-441 79-357 (420)
157 KOG0303 Actin-binding protein 99.9 1.2E-22 2.6E-27 171.0 19.3 215 138-357 74-297 (472)
158 KOG1034 Transcriptional repres 99.9 8.4E-23 1.8E-27 168.1 17.2 246 143-401 87-383 (385)
159 KOG0302 Ribosome Assembly prot 99.9 1.3E-22 2.8E-27 169.9 18.3 221 119-347 185-432 (440)
160 KOG0321 WD40 repeat-containing 99.9 2.2E-22 4.7E-27 179.4 20.0 253 137-403 92-393 (720)
161 KOG1240 Protein kinase contain 99.9 1.1E-21 2.4E-26 187.0 25.8 306 130-442 1033-1431(1431)
162 KOG4328 WD40 protein [Function 99.9 2E-22 4.4E-27 172.8 18.3 256 136-401 225-495 (498)
163 KOG0322 G-protein beta subunit 99.9 1.7E-22 3.6E-27 161.4 16.6 293 134-442 3-321 (323)
164 KOG0270 WD40 repeat-containing 99.9 1.6E-22 3.4E-27 172.8 17.3 213 138-359 236-454 (463)
165 KOG1188 WD40 repeat protein [G 99.9 3.5E-22 7.6E-27 165.3 18.4 273 159-442 41-344 (376)
166 KOG1310 WD40 repeat protein [G 99.9 8.4E-22 1.8E-26 172.7 20.2 210 136-355 41-304 (758)
167 PRK11028 6-phosphogluconolacto 99.9 3.3E-20 7.2E-25 167.7 31.5 273 161-442 5-302 (330)
168 KOG1273 WD40 repeat protein [G 99.9 9.9E-22 2.1E-26 160.9 18.2 247 181-442 16-278 (405)
169 KOG1007 WD repeat protein TSSC 99.9 6.4E-21 1.4E-25 154.3 22.2 261 166-440 38-357 (370)
170 KOG4283 Transcription-coupled 99.9 4.4E-21 9.6E-26 155.7 21.1 243 142-400 98-364 (397)
171 KOG0307 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 193.0 13.4 251 145-404 64-330 (1049)
172 COG2319 FOG: WD40 repeat [Gene 99.9 2.6E-19 5.7E-24 168.6 36.4 287 140-442 60-357 (466)
173 KOG0642 Cell-cycle nuclear pro 99.9 3E-22 6.4E-27 176.2 14.7 254 138-442 287-559 (577)
174 KOG1009 Chromatin assembly com 99.9 4.6E-21 1E-25 162.2 19.6 287 107-405 33-376 (434)
175 KOG1188 WD40 repeat protein [G 99.9 2.3E-21 5E-26 160.5 17.4 258 134-401 59-346 (376)
176 KOG2919 Guanine nucleotide-bin 99.9 1.4E-20 2.9E-25 154.8 21.2 235 193-442 52-325 (406)
177 KOG1963 WD40 repeat protein [G 99.9 1.4E-19 3E-24 167.7 27.8 289 143-442 203-536 (792)
178 KOG0649 WD40 repeat protein [G 99.9 2.7E-19 5.8E-24 141.6 24.3 272 146-441 11-313 (325)
179 COG2319 FOG: WD40 repeat [Gene 99.9 4.6E-18 1E-22 160.1 36.5 288 135-442 145-440 (466)
180 KOG0303 Actin-binding protein 99.9 4.3E-20 9.4E-25 155.8 19.4 230 184-424 75-320 (472)
181 KOG1538 Uncharacterized conser 99.9 1.9E-20 4.1E-25 168.0 17.5 244 134-401 42-293 (1081)
182 KOG0644 Uncharacterized conser 99.9 3.4E-21 7.4E-26 176.7 12.0 278 136-441 181-465 (1113)
183 KOG0290 Conserved WD40 repeat- 99.9 6.3E-19 1.4E-23 143.1 23.5 287 137-439 37-360 (364)
184 KOG1007 WD repeat protein TSSC 99.8 1.2E-19 2.6E-24 147.1 17.4 240 132-401 109-361 (370)
185 KOG1587 Cytoplasmic dynein int 99.8 1.7E-18 3.8E-23 160.0 26.8 260 168-442 222-514 (555)
186 KOG1963 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 157.3 29.2 301 132-441 44-484 (792)
187 KOG1517 Guanine nucleotide bin 99.8 9.6E-19 2.1E-23 164.8 24.5 285 143-441 1062-1378(1387)
188 KOG1587 Cytoplasmic dynein int 99.8 7.2E-19 1.6E-23 162.6 23.5 248 144-402 241-517 (555)
189 PRK01742 tolB translocation pr 99.8 4.5E-19 9.7E-24 165.2 22.4 237 167-424 183-426 (429)
190 KOG0771 Prolactin regulatory e 99.8 1.3E-18 2.9E-23 148.4 22.9 196 235-440 148-350 (398)
191 KOG1445 Tumor-specific antigen 99.8 5.6E-19 1.2E-23 157.8 20.8 237 158-403 591-846 (1012)
192 KOG2394 WD40 protein DMR-N9 [G 99.8 4.5E-18 9.6E-23 149.3 25.9 245 147-422 125-383 (636)
193 PRK11028 6-phosphogluconolacto 99.8 8.9E-18 1.9E-22 151.9 29.2 252 137-401 27-304 (330)
194 KOG0290 Conserved WD40 repeat- 99.8 8.3E-19 1.8E-23 142.4 19.2 242 143-392 94-357 (364)
195 KOG2110 Uncharacterized conser 99.8 1.1E-16 2.3E-21 134.5 30.6 239 145-402 5-249 (391)
196 KOG1523 Actin-related protein 99.8 4.6E-18 9.9E-23 140.0 20.6 255 140-435 5-269 (361)
197 KOG0644 Uncharacterized conser 99.8 3.3E-20 7.1E-25 170.4 6.7 239 181-442 181-424 (1113)
198 PF02239 Cytochrom_D1: Cytochr 99.8 3.8E-16 8.3E-21 140.8 32.0 276 159-442 6-345 (369)
199 KOG1524 WD40 repeat-containing 99.8 2.8E-18 6E-23 150.5 16.8 209 158-398 75-283 (737)
200 KOG2110 Uncharacterized conser 99.8 1E-16 2.3E-21 134.6 24.8 231 190-441 5-245 (391)
201 KOG0771 Prolactin regulatory e 99.8 1.8E-18 3.9E-23 147.7 14.5 196 149-355 148-355 (398)
202 KOG1524 WD40 repeat-containing 99.8 1.8E-17 3.9E-22 145.5 19.7 191 133-351 92-283 (737)
203 PRK03629 tolB translocation pr 99.8 1.8E-16 3.9E-21 147.4 27.0 237 168-424 179-428 (429)
204 KOG1272 WD40-repeat-containing 99.8 1.2E-18 2.7E-23 150.1 11.1 230 146-441 130-359 (545)
205 KOG1517 Guanine nucleotide bin 99.8 3.1E-17 6.7E-22 154.8 21.3 249 146-403 1110-1383(1387)
206 KOG0642 Cell-cycle nuclear pro 99.8 4.3E-18 9.3E-23 150.3 14.6 224 133-413 332-573 (577)
207 PRK01742 tolB translocation pr 99.8 2.6E-17 5.7E-22 153.4 20.3 233 127-382 185-426 (429)
208 KOG4227 WD40 repeat protein [G 99.8 2.9E-17 6.4E-22 138.8 18.5 251 182-442 48-320 (609)
209 KOG0649 WD40 repeat protein [G 99.8 6.8E-16 1.5E-20 122.5 24.2 202 136-356 53-276 (325)
210 PRK02889 tolB translocation pr 99.8 3.4E-16 7.4E-21 145.7 25.7 237 168-424 176-425 (427)
211 KOG2139 WD40 repeat protein [G 99.8 8.4E-16 1.8E-20 128.9 24.8 245 145-403 98-385 (445)
212 KOG2111 Uncharacterized conser 99.8 6.2E-15 1.4E-19 121.7 29.1 236 148-402 8-257 (346)
213 KOG4497 Uncharacterized conser 99.8 7.1E-18 1.5E-22 139.4 11.3 226 195-442 13-238 (447)
214 PRK04922 tolB translocation pr 99.8 3.3E-16 7.2E-21 146.3 24.1 236 168-423 184-432 (433)
215 KOG1523 Actin-related protein 99.8 2.9E-17 6.3E-22 135.3 14.5 201 135-344 45-269 (361)
216 KOG1310 WD40 repeat protein [G 99.7 2.1E-17 4.6E-22 145.4 13.9 220 181-407 41-309 (758)
217 KOG3881 Uncharacterized conser 99.7 3.7E-16 8.1E-21 132.2 20.6 267 144-424 54-342 (412)
218 KOG2111 Uncharacterized conser 99.7 1.5E-15 3.2E-20 125.3 23.5 232 192-441 7-253 (346)
219 KOG4497 Uncharacterized conser 99.7 1.5E-16 3.2E-21 131.7 16.9 274 145-441 48-388 (447)
220 KOG2139 WD40 repeat protein [G 99.7 2E-15 4.4E-20 126.6 23.7 253 136-401 130-431 (445)
221 PRK05137 tolB translocation pr 99.7 2.5E-15 5.5E-20 140.6 27.0 238 168-424 182-433 (435)
222 KOG2321 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 132.5 23.1 279 143-440 49-339 (703)
223 PF02239 Cytochrom_D1: Cytochr 99.7 3.2E-14 6.9E-19 128.4 28.2 262 135-410 26-356 (369)
224 PF10282 Lactonase: Lactonase, 99.7 1.6E-13 3.5E-18 124.2 32.5 274 161-442 2-320 (345)
225 KOG1240 Protein kinase contain 99.7 5.2E-15 1.1E-19 142.2 23.5 252 178-442 1036-1332(1431)
226 PRK03629 tolB translocation pr 99.7 8.9E-15 1.9E-19 136.1 23.5 236 128-381 181-427 (429)
227 PRK04922 tolB translocation pr 99.7 1E-14 2.2E-19 136.3 23.6 217 128-356 186-413 (433)
228 KOG1272 WD40-repeat-containing 99.7 8.2E-17 1.8E-21 139.0 7.9 234 146-397 171-405 (545)
229 PF10282 Lactonase: Lactonase, 99.7 1.1E-12 2.3E-17 118.8 34.9 268 145-421 36-345 (345)
230 KOG2394 WD40 protein DMR-N9 [G 99.7 1.5E-15 3.3E-20 133.6 14.4 139 145-284 219-384 (636)
231 PRK05137 tolB translocation pr 99.7 6.6E-14 1.4E-18 131.1 24.9 217 128-356 184-414 (435)
232 PRK04792 tolB translocation pr 99.6 1.5E-13 3.2E-18 128.5 26.1 238 169-424 199-447 (448)
233 KOG2315 Predicted translation 99.6 1.8E-13 4E-18 121.5 24.7 277 146-442 35-388 (566)
234 PRK02889 tolB translocation pr 99.6 6E-14 1.3E-18 130.7 22.8 216 128-355 178-404 (427)
235 KOG0322 G-protein beta subunit 99.6 1.8E-14 4E-19 115.8 16.4 245 137-400 47-322 (323)
236 PF08662 eIF2A: Eukaryotic tra 99.6 4.9E-14 1.1E-18 115.6 19.4 156 149-312 9-180 (194)
237 KOG1354 Serine/threonine prote 99.6 7.2E-14 1.6E-18 116.7 19.8 275 144-442 24-357 (433)
238 PRK00178 tolB translocation pr 99.6 3.2E-13 7E-18 126.7 26.3 238 169-424 180-428 (430)
239 TIGR02800 propeller_TolB tol-p 99.6 3.3E-13 7.1E-18 126.6 26.2 237 168-422 170-417 (417)
240 KOG1334 WD40 repeat protein [G 99.6 9.6E-15 2.1E-19 127.2 14.3 254 181-442 133-422 (559)
241 KOG3881 Uncharacterized conser 99.6 7.9E-14 1.7E-18 118.4 18.3 209 140-359 100-325 (412)
242 KOG1409 Uncharacterized conser 99.6 1.5E-13 3.3E-18 114.7 19.4 252 134-401 13-270 (404)
243 KOG2041 WD40 repeat protein [G 99.6 1.8E-13 3.8E-18 124.9 20.4 276 145-440 14-333 (1189)
244 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.3E-11 5E-16 107.3 31.5 258 168-442 27-328 (352)
245 PF08662 eIF2A: Eukaryotic tra 99.6 3.2E-13 6.9E-18 110.8 18.6 158 235-409 9-186 (194)
246 KOG2314 Translation initiation 99.5 3.3E-12 7.3E-17 113.4 23.4 273 149-436 214-559 (698)
247 PRK01029 tolB translocation pr 99.5 1.2E-11 2.5E-16 114.8 28.2 241 169-425 166-426 (428)
248 PRK00178 tolB translocation pr 99.5 3.2E-12 7E-17 120.0 24.2 213 132-356 185-408 (430)
249 TIGR02800 propeller_TolB tol-p 99.5 4E-12 8.8E-17 119.2 24.6 209 132-355 176-398 (417)
250 COG2706 3-carboxymuconate cycl 99.5 1.3E-10 2.8E-15 98.7 30.5 268 167-441 15-318 (346)
251 PRK04792 tolB translocation pr 99.5 4.4E-12 9.5E-17 118.6 23.3 210 133-356 205-427 (448)
252 KOG4190 Uncharacterized conser 99.5 2.6E-13 5.7E-18 120.4 13.5 256 132-397 722-1032(1034)
253 KOG0280 Uncharacterized conser 99.5 5.8E-12 1.2E-16 103.3 20.1 261 166-441 44-330 (339)
254 COG2706 3-carboxymuconate cycl 99.5 3.5E-10 7.6E-15 96.1 30.9 271 141-422 35-345 (346)
255 KOG1409 Uncharacterized conser 99.5 1.7E-12 3.7E-17 108.6 16.8 247 180-442 14-268 (404)
256 KOG1064 RAVE (regulator of V-A 99.5 4.4E-13 9.6E-18 133.6 15.0 225 188-437 2206-2439(2439)
257 KOG4547 WD40 repeat-containing 99.5 4.3E-12 9.3E-17 113.7 19.6 185 200-441 3-217 (541)
258 KOG1354 Serine/threonine prote 99.5 3.1E-12 6.7E-17 107.1 16.6 272 146-441 85-431 (433)
259 KOG0974 WD-repeat protein WDR6 99.5 3.7E-12 8E-17 121.2 19.0 193 191-442 88-286 (967)
260 KOG4547 WD40 repeat-containing 99.5 3.1E-11 6.6E-16 108.4 23.0 186 157-355 4-221 (541)
261 PRK01029 tolB translocation pr 99.5 3.4E-11 7.3E-16 111.8 24.3 218 130-357 169-406 (428)
262 TIGR02658 TTQ_MADH_Hv methylam 99.5 6.8E-10 1.5E-14 98.1 31.2 254 135-410 37-339 (352)
263 KOG4532 WD40-like repeat conta 99.5 3.5E-11 7.6E-16 97.5 21.0 247 166-426 50-315 (344)
264 COG5354 Uncharacterized protei 99.4 6.9E-11 1.5E-15 104.2 22.4 277 144-442 31-346 (561)
265 PLN02919 haloacid dehalogenase 99.4 3.9E-10 8.4E-15 115.3 31.4 245 149-405 571-892 (1057)
266 KOG2321 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 109.5 18.5 196 193-402 136-344 (703)
267 COG5354 Uncharacterized protei 99.4 2.2E-10 4.7E-15 101.1 24.8 280 146-442 72-393 (561)
268 KOG2315 Predicted translation 99.4 6E-11 1.3E-15 105.8 21.2 252 149-424 129-411 (566)
269 TIGR03300 assembly_YfgL outer 99.4 2.7E-10 5.9E-15 105.2 26.6 254 158-441 105-376 (377)
270 KOG0280 Uncharacterized conser 99.4 7.7E-11 1.7E-15 96.8 19.3 247 144-401 68-333 (339)
271 KOG0309 Conserved WD40 repeat- 99.4 7.2E-12 1.6E-16 115.0 14.1 283 145-441 24-336 (1081)
272 PF04762 IKI3: IKI3 family; I 99.4 1.3E-09 2.8E-14 109.5 30.5 284 144-442 74-454 (928)
273 TIGR03300 assembly_YfgL outer 99.4 5.3E-10 1.1E-14 103.2 26.1 258 158-442 65-336 (377)
274 PRK04043 tolB translocation pr 99.4 1.4E-09 3E-14 100.4 28.1 211 192-419 189-417 (419)
275 KOG1064 RAVE (regulator of V-A 99.4 6.8E-12 1.5E-16 125.5 13.5 195 141-361 2204-2405(2439)
276 KOG1912 WD40 repeat protein [G 99.3 3.6E-10 7.7E-15 104.7 22.1 210 134-353 44-303 (1062)
277 KOG0974 WD-repeat protein WDR6 99.3 1.4E-10 3.1E-15 110.7 20.1 196 146-356 88-290 (967)
278 COG4946 Uncharacterized protei 99.3 2.6E-09 5.6E-14 93.7 25.2 179 153-342 327-506 (668)
279 KOG0882 Cyclophilin-related pe 99.3 8.8E-11 1.9E-15 102.0 15.7 256 144-410 8-314 (558)
280 PLN02919 haloacid dehalogenase 99.3 2.1E-09 4.6E-14 110.0 28.1 239 194-442 571-886 (1057)
281 COG5170 CDC55 Serine/threonine 99.3 1.2E-10 2.5E-15 96.5 15.2 281 144-441 25-364 (460)
282 PF04762 IKI3: IKI3 family; I 99.3 8.1E-09 1.8E-13 103.8 31.3 288 146-441 22-376 (928)
283 COG4946 Uncharacterized protei 99.3 8.4E-09 1.8E-13 90.6 26.0 160 143-308 357-522 (668)
284 PF15492 Nbas_N: Neuroblastoma 99.3 9E-09 2E-13 85.1 24.8 240 150-412 2-270 (282)
285 KOG2041 WD40 repeat protein [G 99.3 9.9E-10 2.2E-14 101.0 20.7 246 135-398 61-334 (1189)
286 PF08450 SGL: SMP-30/Gluconola 99.2 3.6E-08 7.9E-13 85.1 28.2 229 195-432 4-244 (246)
287 PRK04043 tolB translocation pr 99.2 1.3E-08 2.7E-13 94.1 25.1 218 128-356 171-402 (419)
288 KOG1645 RING-finger-containing 99.2 1E-09 2.2E-14 94.2 16.3 253 178-441 181-458 (463)
289 PF07433 DUF1513: Protein of u 99.2 4.3E-08 9.4E-13 83.7 26.0 240 192-436 6-278 (305)
290 KOG1912 WD40 repeat protein [G 99.2 2.3E-09 5E-14 99.5 19.2 240 146-402 16-305 (1062)
291 KOG4190 Uncharacterized conser 99.2 3.7E-11 8E-16 107.0 7.3 199 230-440 734-943 (1034)
292 KOG4714 Nucleoporin [Nuclear s 99.2 5.8E-10 1.2E-14 90.2 11.6 165 139-312 83-255 (319)
293 PRK11138 outer membrane biogen 99.1 3.9E-08 8.6E-13 91.2 25.3 255 158-441 120-391 (394)
294 KOG1832 HIV-1 Vpr-binding prot 99.1 3.5E-10 7.6E-15 106.3 10.6 217 180-425 1091-1313(1516)
295 PF13360 PQQ_2: PQQ-like domai 99.1 4.2E-08 9E-13 84.5 22.8 219 167-407 2-236 (238)
296 KOG3914 WD repeat protein WDR4 99.1 6.2E-09 1.3E-13 89.5 15.7 160 148-318 65-230 (390)
297 KOG2314 Translation initiation 99.1 2.7E-08 5.9E-13 89.1 19.7 226 192-434 212-466 (698)
298 KOG1920 IkappaB kinase complex 99.1 8.3E-08 1.8E-12 93.9 24.5 279 145-441 68-362 (1265)
299 KOG4714 Nucleoporin [Nuclear s 99.1 7.7E-10 1.7E-14 89.5 8.9 195 234-442 39-252 (319)
300 KOG4532 WD40-like repeat conta 99.1 6.9E-08 1.5E-12 78.8 19.7 242 150-401 72-331 (344)
301 KOG0309 Conserved WD40 repeat- 99.0 3.1E-09 6.8E-14 98.1 13.0 246 147-402 69-340 (1081)
302 PF13360 PQQ_2: PQQ-like domai 99.0 1.7E-07 3.7E-12 80.7 23.5 214 211-442 2-228 (238)
303 KOG1832 HIV-1 Vpr-binding prot 99.0 3.7E-10 7.9E-15 106.2 7.1 263 135-432 1091-1377(1516)
304 PRK11138 outer membrane biogen 99.0 1.4E-07 3E-12 87.6 23.9 260 158-442 69-351 (394)
305 PF08450 SGL: SMP-30/Gluconola 99.0 2.2E-06 4.8E-11 74.0 30.0 217 150-389 4-243 (246)
306 PF15492 Nbas_N: Neuroblastoma 99.0 3.8E-07 8.2E-12 75.7 23.0 220 196-442 3-257 (282)
307 KOG3914 WD repeat protein WDR4 99.0 4.8E-09 1E-13 90.2 11.6 153 278-442 66-221 (390)
308 COG5170 CDC55 Serine/threonine 99.0 5.2E-09 1.1E-13 87.0 11.4 200 146-354 86-367 (460)
309 PF07433 DUF1513: Protein of u 99.0 2.2E-06 4.8E-11 73.4 26.3 237 148-398 7-282 (305)
310 PF00400 WD40: WD domain, G-be 98.9 1.9E-09 4E-14 63.2 5.1 38 136-174 2-39 (39)
311 KOG2695 WD40 repeat protein [G 98.9 5.6E-09 1.2E-13 88.0 9.1 167 248-423 228-402 (425)
312 KOG2066 Vacuolar assembly/sort 98.9 8.1E-08 1.7E-12 90.0 17.4 184 145-354 39-233 (846)
313 KOG1275 PAB-dependent poly(A) 98.9 5.5E-08 1.2E-12 92.3 16.3 191 201-399 146-340 (1118)
314 KOG2695 WD40 repeat protein [G 98.9 5.6E-09 1.2E-13 88.0 8.7 160 152-323 218-388 (425)
315 PF00400 WD40: WD domain, G-be 98.9 5E-09 1.1E-13 61.3 5.4 39 403-442 1-39 (39)
316 KOG4649 PQQ (pyrrolo-quinoline 98.9 2.7E-06 5.9E-11 69.5 22.4 117 153-274 18-135 (354)
317 PF14583 Pectate_lyase22: Olig 98.9 1.7E-05 3.6E-10 70.3 28.4 294 134-441 19-378 (386)
318 KOG0882 Cyclophilin-related pe 98.9 3.9E-08 8.5E-13 85.9 11.8 212 189-409 8-239 (558)
319 KOG2114 Vacuolar assembly/sort 98.8 2.7E-06 5.7E-11 80.8 22.1 196 147-358 27-247 (933)
320 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.8E-12 89.9 13.1 151 147-311 179-342 (1118)
321 KOG1008 Uncharacterized conser 98.7 1.1E-08 2.4E-13 93.2 4.0 201 145-355 56-276 (783)
322 KOG2114 Vacuolar assembly/sort 98.7 4.2E-06 9E-11 79.5 20.6 207 197-416 30-259 (933)
323 PF00780 CNH: CNH domain; Int 98.7 5.3E-05 1.2E-09 66.7 26.5 228 158-412 7-266 (275)
324 PRK02888 nitrous-oxide reducta 98.7 1.2E-05 2.5E-10 75.6 22.8 177 211-402 214-405 (635)
325 KOG3621 WD40 repeat-containing 98.7 1E-05 2.2E-10 75.3 21.8 144 146-293 34-188 (726)
326 COG0823 TolB Periplasmic compo 98.7 6.2E-06 1.3E-10 75.9 20.5 192 185-391 187-389 (425)
327 KOG2066 Vacuolar assembly/sort 98.6 3.5E-06 7.6E-11 79.4 18.6 139 157-312 82-234 (846)
328 PF00930 DPPIV_N: Dipeptidyl p 98.6 2.1E-05 4.5E-10 71.8 23.6 269 154-435 1-349 (353)
329 KOG1920 IkappaB kinase complex 98.6 1.3E-05 2.8E-10 79.2 22.7 233 190-441 68-319 (1265)
330 cd00216 PQQ_DH Dehydrogenases 98.6 5.6E-05 1.2E-09 72.1 26.8 257 159-432 111-456 (488)
331 PF06433 Me-amine-dh_H: Methyl 98.6 0.00017 3.7E-09 62.8 26.7 246 150-412 40-331 (342)
332 cd00216 PQQ_DH Dehydrogenases 98.6 4.4E-05 9.5E-10 72.8 25.6 265 159-442 62-422 (488)
333 KOG3617 WD40 and TPR repeat-co 98.6 2.1E-06 4.4E-11 81.3 15.3 109 194-311 19-131 (1416)
334 PF06977 SdiA-regulated: SdiA- 98.6 4E-05 8.7E-10 64.9 21.7 200 231-441 21-247 (248)
335 PF03178 CPSF_A: CPSF A subuni 98.6 5.8E-05 1.3E-09 68.0 24.2 215 212-440 2-261 (321)
336 KOG1645 RING-finger-containing 98.6 6.7E-06 1.5E-10 71.3 16.7 254 136-401 184-461 (463)
337 PF04053 Coatomer_WDAD: Coatom 98.6 2.1E-05 4.7E-10 72.7 21.1 227 139-401 26-262 (443)
338 COG3391 Uncharacterized conser 98.5 0.00029 6.3E-09 64.8 28.3 265 147-424 32-309 (381)
339 PF08596 Lgl_C: Lethal giant l 98.5 5E-05 1.1E-09 69.3 22.6 240 147-399 3-333 (395)
340 PF11768 DUF3312: Protein of u 98.5 1.2E-05 2.7E-10 73.6 17.6 115 190-314 205-332 (545)
341 PRK02888 nitrous-oxide reducta 98.5 6.4E-06 1.4E-10 77.3 16.2 173 167-355 214-405 (635)
342 PF11768 DUF3312: Protein of u 98.5 6.5E-06 1.4E-10 75.4 15.0 116 146-264 206-331 (545)
343 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00026 5.7E-09 58.3 22.0 143 202-354 23-165 (354)
344 COG3391 Uncharacterized conser 98.4 0.00067 1.5E-08 62.5 28.0 240 192-440 32-279 (381)
345 COG0823 TolB Periplasmic compo 98.4 1.6E-05 3.5E-10 73.3 17.2 196 134-342 181-387 (425)
346 KOG3617 WD40 and TPR repeat-co 98.4 6.1E-06 1.3E-10 78.3 14.0 253 148-425 62-367 (1416)
347 COG3386 Gluconolactonase [Carb 98.4 0.00063 1.4E-08 59.9 25.7 232 197-435 31-277 (307)
348 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00042 9.2E-09 64.2 25.5 191 213-425 62-271 (410)
349 PF06433 Me-amine-dh_H: Methyl 98.4 0.0015 3.3E-08 57.1 27.4 258 168-442 17-318 (342)
350 PF06977 SdiA-regulated: SdiA- 98.3 0.001 2.3E-08 56.4 24.4 200 139-351 15-247 (248)
351 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0001 2.2E-09 67.3 19.8 229 199-434 1-301 (353)
352 PF05096 Glu_cyclase_2: Glutam 98.3 0.0014 3.1E-08 55.3 24.6 196 223-432 34-249 (264)
353 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.00013 2.7E-09 52.3 14.9 103 148-258 2-110 (111)
354 PF03178 CPSF_A: CPSF A subuni 98.3 0.00056 1.2E-08 61.6 23.3 216 169-398 3-262 (321)
355 PF04053 Coatomer_WDAD: Coatom 98.3 0.00066 1.4E-08 63.0 23.1 222 188-441 30-259 (443)
356 COG3490 Uncharacterized protei 98.3 0.0013 2.8E-08 55.1 22.1 244 191-440 68-344 (366)
357 KOG1008 Uncharacterized conser 98.2 5.2E-07 1.1E-11 82.7 2.3 201 231-442 56-273 (783)
358 KOG3621 WD40 repeat-containing 98.2 3.9E-05 8.5E-10 71.6 13.2 116 189-312 32-155 (726)
359 PF02897 Peptidase_S9_N: Proly 98.2 0.0032 7E-08 59.1 26.5 234 193-433 126-390 (414)
360 PF04841 Vps16_N: Vps16, N-ter 98.2 0.001 2.3E-08 61.6 22.3 246 128-411 63-324 (410)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0091 2E-07 57.4 28.5 194 159-359 70-338 (527)
362 PF08553 VID27: VID27 cytoplas 98.1 6.1E-05 1.3E-09 73.6 13.9 130 302-432 503-637 (794)
363 PF08596 Lgl_C: Lethal giant l 98.1 0.0012 2.6E-08 60.4 21.5 232 192-441 3-287 (395)
364 PF14727 PHTB1_N: PTHB1 N-term 98.0 0.01 2.2E-07 54.5 29.3 269 155-440 34-356 (418)
365 KOG4640 Anaphase-promoting com 98.0 3.7E-05 8.1E-10 70.9 9.5 93 145-241 20-115 (665)
366 PF02897 Peptidase_S9_N: Proly 98.0 0.015 3.3E-07 54.5 28.4 245 147-405 125-408 (414)
367 KOG1897 Damage-specific DNA bi 98.0 0.0093 2E-07 58.7 24.8 284 147-440 585-894 (1096)
368 KOG2444 WD40 repeat protein [G 97.9 2.4E-05 5.1E-10 63.1 6.2 134 302-442 39-175 (238)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.022 4.8E-07 54.8 28.4 254 159-431 121-521 (527)
370 KOG1897 Damage-specific DNA bi 97.9 0.011 2.3E-07 58.3 23.8 282 144-441 529-853 (1096)
371 smart00320 WD40 WD40 repeats. 97.9 5.6E-05 1.2E-09 43.3 5.8 39 403-442 2-40 (40)
372 PF14583 Pectate_lyase22: Olig 97.9 0.018 3.8E-07 51.6 24.2 254 135-400 69-380 (386)
373 COG3386 Gluconolactonase [Carb 97.9 0.017 3.8E-07 50.9 24.0 219 151-389 30-273 (307)
374 smart00320 WD40 WD40 repeats. 97.8 3.4E-05 7.3E-10 44.3 4.4 38 136-174 3-40 (40)
375 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0037 8E-08 45.0 14.7 100 193-306 2-109 (111)
376 PF08553 VID27: VID27 cytoplas 97.8 0.00081 1.8E-08 66.0 15.2 133 166-311 502-647 (794)
377 PRK13616 lipoprotein LpqB; Pro 97.8 0.0032 7E-08 60.9 19.1 188 189-396 348-563 (591)
378 KOG4640 Anaphase-promoting com 97.8 0.00013 2.8E-09 67.4 9.0 95 230-333 19-114 (665)
379 COG3204 Uncharacterized protei 97.8 0.015 3.3E-07 49.4 19.9 118 186-311 81-210 (316)
380 KOG2395 Protein involved in va 97.8 0.0014 3E-08 59.7 14.7 127 302-432 355-490 (644)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.022 4.7E-07 52.3 21.9 88 195-283 6-117 (415)
382 COG5276 Uncharacterized conser 97.7 0.025 5.3E-07 48.0 26.5 275 144-442 85-367 (370)
383 PRK10115 protease 2; Provision 97.7 0.076 1.6E-06 53.0 28.0 199 191-400 127-343 (686)
384 PF14870 PSII_BNR: Photosynthe 97.7 0.034 7.3E-07 48.8 30.7 274 145-441 16-301 (302)
385 PRK13616 lipoprotein LpqB; Pro 97.7 0.0061 1.3E-07 59.1 18.9 138 146-291 350-513 (591)
386 COG3490 Uncharacterized protei 97.6 0.0081 1.7E-07 50.6 16.6 219 221-442 57-308 (366)
387 PF05694 SBP56: 56kDa selenium 97.6 0.038 8.2E-07 50.1 21.9 232 201-433 86-393 (461)
388 PHA02713 hypothetical protein; 97.6 0.0098 2.1E-07 57.8 19.6 226 169-405 273-537 (557)
389 PF00780 CNH: CNH domain; Int 97.6 0.018 3.9E-07 50.7 19.8 147 244-406 7-170 (275)
390 KOG2079 Vacuolar assembly/sort 97.6 0.0024 5.2E-08 63.1 14.2 93 201-294 98-195 (1206)
391 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.052 1.1E-06 46.6 24.4 251 147-435 24-324 (336)
392 COG3823 Glutamine cyclotransfe 97.5 0.013 2.8E-07 47.0 15.0 176 244-432 56-247 (262)
393 KOG2395 Protein involved in va 97.5 0.0033 7.1E-08 57.4 13.1 137 161-311 349-500 (644)
394 TIGR03074 PQQ_membr_DH membran 97.5 0.054 1.2E-06 54.2 22.8 235 159-410 195-486 (764)
395 KOG4441 Proteins containing BT 97.4 0.032 6.8E-07 54.2 20.0 236 158-403 285-548 (571)
396 KOG4499 Ca2+-binding protein R 97.4 0.056 1.2E-06 44.4 19.3 218 204-424 29-264 (310)
397 PHA02713 hypothetical protein; 97.3 0.0098 2.1E-07 57.8 15.9 192 158-356 304-535 (557)
398 KOG2079 Vacuolar assembly/sort 97.3 0.0012 2.6E-08 65.2 8.7 107 326-437 89-198 (1206)
399 COG3204 Uncharacterized protei 97.3 0.018 3.9E-07 49.0 14.3 162 271-439 82-258 (316)
400 PF05096 Glu_cyclase_2: Glutam 97.3 0.099 2.1E-06 44.5 21.9 194 136-343 34-249 (264)
401 KOG2444 WD40 repeat protein [G 97.2 0.0011 2.4E-08 53.8 6.6 139 163-312 35-178 (238)
402 PF05694 SBP56: 56kDa selenium 97.2 0.18 3.8E-06 46.0 22.8 227 158-391 87-393 (461)
403 PF15390 DUF4613: Domain of un 97.1 0.25 5.4E-06 46.5 21.1 117 146-263 57-187 (671)
404 PRK13684 Ycf48-like protein; P 97.1 0.2 4.3E-06 45.3 28.4 274 145-442 45-329 (334)
405 PHA03098 kelch-like protein; P 97.1 0.047 1E-06 53.2 17.8 153 158-314 295-467 (534)
406 PF12894 Apc4_WD40: Anaphase-p 97.0 0.003 6.5E-08 37.8 5.1 35 370-405 10-44 (47)
407 KOG4441 Proteins containing BT 97.0 0.11 2.3E-06 50.6 18.5 224 201-437 284-534 (571)
408 PF07995 GSDH: Glucose / Sorbo 96.9 0.33 7E-06 43.9 27.6 67 372-439 253-330 (331)
409 PF15390 DUF4613: Domain of un 96.8 0.072 1.6E-06 49.9 14.9 154 140-311 14-186 (671)
410 KOG3630 Nuclear pore complex, 96.8 0.016 3.5E-07 57.9 11.2 145 191-342 101-261 (1405)
411 TIGR02604 Piru_Ver_Nterm putat 96.8 0.45 9.8E-06 43.8 24.0 143 146-293 14-202 (367)
412 PF12894 Apc4_WD40: Anaphase-p 96.7 0.006 1.3E-07 36.5 5.0 34 190-224 11-44 (47)
413 PF03022 MRJP: Major royal jel 96.7 0.36 7.8E-06 42.5 18.2 169 213-389 35-253 (287)
414 PF10214 Rrn6: RNA polymerase 96.7 0.94 2E-05 46.2 24.4 159 188-355 77-277 (765)
415 PF14870 PSII_BNR: Photosynthe 96.6 0.45 9.7E-06 42.0 23.5 155 230-398 143-301 (302)
416 PF10647 Gmad1: Lipoprotein Lp 96.6 0.28 6.1E-06 42.4 16.7 150 192-346 25-187 (253)
417 TIGR03074 PQQ_membr_DH membran 96.5 0.96 2.1E-05 45.6 22.0 119 202-321 194-354 (764)
418 COG1520 FOG: WD40-like repeat 96.5 0.73 1.6E-05 42.5 22.2 198 201-411 68-278 (370)
419 PF14781 BBS2_N: Ciliary BBSom 96.4 0.21 4.5E-06 37.4 12.6 116 150-269 3-132 (136)
420 KOG2280 Vacuolar assembly/sort 96.3 0.094 2E-06 50.5 12.9 197 126-334 64-269 (829)
421 PHA03098 kelch-like protein; P 96.3 0.35 7.6E-06 47.2 17.4 194 201-403 294-513 (534)
422 PRK13684 Ycf48-like protein; P 96.3 0.4 8.6E-06 43.4 16.4 150 145-310 172-330 (334)
423 PF12234 Rav1p_C: RAVE protein 96.2 0.12 2.6E-06 50.0 13.1 118 139-261 23-155 (631)
424 PHA02790 Kelch-like protein; P 96.2 0.62 1.3E-05 44.7 18.1 142 158-313 272-425 (480)
425 COG5276 Uncharacterized conser 96.1 0.79 1.7E-05 39.4 22.0 194 189-402 85-286 (370)
426 TIGR02604 Piru_Ver_Nterm putat 96.1 0.57 1.2E-05 43.1 16.6 155 275-433 14-202 (367)
427 COG5167 VID27 Protein involved 96.0 0.12 2.5E-06 47.6 11.4 123 302-432 489-622 (776)
428 PF12234 Rav1p_C: RAVE protein 96.0 0.3 6.4E-06 47.4 14.8 117 275-400 30-155 (631)
429 KOG2247 WD40 repeat-containing 96.0 0.0011 2.3E-08 59.9 -1.3 140 147-293 36-178 (615)
430 KOG2280 Vacuolar assembly/sort 96.0 0.22 4.7E-06 48.2 13.3 196 212-424 64-270 (829)
431 PLN00033 photosystem II stabil 95.9 1.4 3E-05 40.8 31.8 149 278-441 242-396 (398)
432 PRK10115 protease 2; Provision 95.9 2.2 4.8E-05 42.9 32.5 244 146-404 127-397 (686)
433 PF14761 HPS3_N: Hermansky-Pud 95.9 0.77 1.7E-05 37.7 15.1 139 159-310 29-213 (215)
434 PF08728 CRT10: CRT10; InterP 95.9 0.42 9.1E-06 46.9 15.1 144 158-310 49-245 (717)
435 PF14781 BBS2_N: Ciliary BBSom 95.8 0.55 1.2E-05 35.2 13.5 111 195-315 3-129 (136)
436 PF10647 Gmad1: Lipoprotein Lp 95.8 1.2 2.5E-05 38.6 21.5 153 232-394 24-188 (253)
437 PF07250 Glyoxal_oxid_N: Glyox 95.7 0.37 7.9E-06 40.9 12.7 153 256-414 48-210 (243)
438 KOG3630 Nuclear pore complex, 95.6 0.15 3.3E-06 51.5 11.3 148 231-388 100-260 (1405)
439 PF10168 Nup88: Nuclear pore c 95.6 0.48 1E-05 47.3 14.8 32 372-403 147-181 (717)
440 PF10313 DUF2415: Uncharacteri 95.5 0.054 1.2E-06 31.4 4.8 32 146-177 1-34 (43)
441 COG4590 ABC-type uncharacteriz 95.4 0.13 2.9E-06 46.5 9.3 169 135-315 210-390 (733)
442 PLN02153 epithiospecifier prot 95.4 2.1 4.4E-05 39.0 20.9 104 158-265 33-170 (341)
443 PF10168 Nup88: Nuclear pore c 95.4 3.5 7.5E-05 41.4 22.7 74 230-312 83-180 (717)
444 KOG2247 WD40 repeat-containing 95.3 0.011 2.4E-07 53.6 2.4 140 192-341 36-176 (615)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 0.37 8.1E-06 44.4 11.6 88 185-272 302-408 (415)
446 PF08728 CRT10: CRT10; InterP 95.0 1.2 2.7E-05 43.8 15.1 107 335-442 113-244 (717)
447 smart00036 CNH Domain found in 95.0 2.5 5.4E-05 37.7 27.1 235 158-411 13-280 (302)
448 KOG4499 Ca2+-binding protein R 94.8 2 4.2E-05 35.7 17.0 135 190-334 108-263 (310)
449 PF10313 DUF2415: Uncharacteri 94.8 0.18 3.8E-06 29.3 5.4 32 232-263 1-34 (43)
450 KOG1916 Nuclear protein, conta 94.8 0.032 6.9E-07 54.6 3.9 168 139-316 126-328 (1283)
451 KOG3616 Selective LIM binding 94.7 0.18 3.9E-06 48.6 8.5 91 145-242 14-108 (1636)
452 smart00036 CNH Domain found in 94.7 3 6.6E-05 37.1 22.9 61 201-262 12-73 (302)
453 PHA02790 Kelch-like protein; P 94.4 1.9 4.1E-05 41.4 15.1 145 158-313 319-472 (480)
454 TIGR03606 non_repeat_PQQ dehyd 94.4 4.5 9.7E-05 38.1 29.7 61 141-202 25-90 (454)
455 PF02333 Phytase: Phytase; In 94.4 3.8 8.3E-05 37.3 20.5 190 244-442 68-288 (381)
456 PLN00033 photosystem II stabil 94.4 4.2 9.1E-05 37.7 18.8 144 148-308 241-396 (398)
457 PF07569 Hira: TUP1-like enhan 94.4 0.29 6.3E-06 41.1 8.4 63 378-442 17-93 (219)
458 PF10433 MMS1_N: Mono-function 94.4 5.3 0.00012 38.7 26.8 241 158-423 222-503 (504)
459 KOG2063 Vacuolar assembly/sort 94.3 6.9 0.00015 39.9 19.2 66 158-224 26-100 (877)
460 KOG2377 Uncharacterized conser 94.2 1 2.2E-05 41.1 11.5 133 201-343 32-172 (657)
461 PF05935 Arylsulfotrans: Aryls 94.2 5.5 0.00012 38.1 23.5 143 159-316 116-306 (477)
462 PF14761 HPS3_N: Hermansky-Pud 94.0 2.9 6.3E-05 34.4 16.0 118 233-355 19-164 (215)
463 TIGR03548 mutarot_permut cycli 94.0 4.5 9.7E-05 36.5 20.4 108 201-314 72-197 (323)
464 KOG1900 Nuclear pore complex, 93.9 2.2 4.8E-05 44.4 14.4 168 131-312 65-273 (1311)
465 COG4590 ABC-type uncharacteriz 93.8 0.73 1.6E-05 42.0 10.0 227 201-441 126-383 (733)
466 COG5167 VID27 Protein involved 93.8 2.6 5.6E-05 39.3 13.3 147 151-312 472-633 (776)
467 PF07569 Hira: TUP1-like enhan 93.7 0.57 1.2E-05 39.3 8.8 64 199-264 19-97 (219)
468 PF10433 MMS1_N: Mono-function 93.7 7.3 0.00016 37.7 22.4 228 199-440 219-472 (504)
469 KOG4659 Uncharacterized conser 93.4 8.8 0.00019 40.4 17.4 283 141-439 343-686 (1899)
470 TIGR03548 mutarot_permut cycli 93.4 5.8 0.00013 35.8 17.3 105 158-265 73-197 (323)
471 KOG1900 Nuclear pore complex, 93.3 1.3 2.9E-05 46.0 11.9 138 302-442 98-270 (1311)
472 TIGR03547 muta_rot_YjhT mutatr 93.3 6.4 0.00014 35.9 20.1 51 244-294 64-127 (346)
473 PLN02193 nitrile-specifier pro 93.0 8.9 0.00019 36.8 20.9 107 201-314 228-354 (470)
474 PRK14131 N-acetylneuraminic ac 92.9 7.6 0.00017 35.9 19.2 51 244-294 85-148 (376)
475 KOG1898 Splicing factor 3b, su 92.8 13 0.00028 38.2 18.7 173 213-400 854-1047(1205)
476 COG4257 Vgb Streptogramin lyas 92.7 5.8 0.00013 34.0 23.4 238 146-402 62-306 (353)
477 PLN02153 epithiospecifier prot 92.7 7.7 0.00017 35.3 21.5 71 244-314 86-170 (341)
478 PF11635 Med16: Mediator compl 92.7 13 0.00029 37.9 18.1 68 371-439 259-345 (753)
479 COG3823 Glutamine cyclotransfe 92.6 5 0.00011 32.8 13.9 106 201-316 55-163 (262)
480 COG3292 Predicted periplasmic 92.5 10 0.00022 36.2 17.8 270 145-439 164-442 (671)
481 TIGR02276 beta_rpt_yvtn 40-res 92.4 0.87 1.9E-05 26.2 6.0 40 200-239 1-41 (42)
482 PF13449 Phytase-like: Esteras 92.4 8.3 0.00018 34.9 15.7 147 275-430 20-230 (326)
483 KOG2377 Uncharacterized conser 92.1 9.9 0.00021 35.1 17.4 140 149-293 26-172 (657)
484 PF14727 PHTB1_N: PTHB1 N-term 92.0 10 0.00023 35.3 25.7 143 201-353 36-203 (418)
485 PF11715 Nup160: Nucleoporin N 91.9 1.1 2.5E-05 43.8 9.5 72 158-229 158-257 (547)
486 PF10214 Rrn6: RNA polymerase 91.7 15 0.00032 37.8 17.3 128 134-263 131-277 (765)
487 PF12768 Rax2: Cortical protei 91.6 6.1 0.00013 34.6 12.6 115 168-284 16-146 (281)
488 KOG1983 Tomosyn and related SN 91.4 18 0.00038 38.2 17.5 30 145-175 35-64 (993)
489 TIGR03118 PEPCTERM_chp_1 conse 90.9 11 0.00023 33.1 19.4 201 233-442 24-277 (336)
490 TIGR03032 conserved hypothetic 90.8 11 0.00024 33.3 13.2 83 201-286 212-316 (335)
491 KOG1916 Nuclear protein, conta 90.7 0.4 8.6E-06 47.5 4.8 70 147-220 182-265 (1283)
492 TIGR02276 beta_rpt_yvtn 40-res 90.3 1.4 3.1E-05 25.3 5.4 33 241-273 1-33 (42)
493 PF08801 Nucleoporin_N: Nup133 89.9 10 0.00022 35.8 13.6 31 372-402 190-220 (422)
494 TIGR03547 muta_rot_YjhT mutatr 89.9 15 0.00033 33.5 20.5 25 201-225 63-98 (346)
495 PLN02193 nitrile-specifier pro 89.7 20 0.00043 34.4 19.1 197 201-404 175-413 (470)
496 KOG4460 Nuclear pore complex, 89.5 9.8 0.00021 35.8 12.2 125 203-359 53-203 (741)
497 PF12657 TFIIIC_delta: Transcr 89.3 3.3 7.1E-05 33.4 8.5 105 278-398 8-118 (173)
498 PF14269 Arylsulfotran_2: Aryl 89.3 14 0.0003 32.9 13.0 169 250-442 21-218 (299)
499 PF07676 PD40: WD40-like Beta 89.2 1.7 3.6E-05 24.6 5.0 36 406-441 1-38 (39)
500 PF10395 Utp8: Utp8 family; I 89.2 24 0.00053 34.8 21.0 201 145-353 71-304 (670)
No 1
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-53 Score=363.69 Aligned_cols=307 Identities=42% Similarity=0.782 Sum_probs=296.2
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEE
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLS 207 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 207 (442)
..++.+|.++++++.||+..|+++.|.|-.+.+|++++.|+.|+||++.. ...+++++.+|..+|.+++|+.+|..|++
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeee
Confidence 34677799999999999999999999995599999999999999999977 47899999999999999999999999999
Q ss_pred EecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475 208 CGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
++.|+.|++||+++|+++..|.....++|+.|+|++.+.|++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
+++++++ |+.++||+.+.+..+..+...+...+.++..+|+++++++-+.|+.|.+|......++...+.+++
T Consensus 356 rFissSD-------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 356 RFISSSD-------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred eEeeecc-------CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|...++.+.+.|||||++|++|+.||.+.+||.++-+++..+++|.+.+..+.|+|..+..+|||+.||.|++||
T Consensus 429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999999999999999999999999999999989999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-51 Score=341.33 Aligned_cols=309 Identities=19% Similarity=0.288 Sum_probs=275.9
Q ss_pred hhcccccchhhhHhhhhhhcCCCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc
Q 013475 102 QVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK 181 (442)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~ 181 (442)
.+..+..|...|.|. .......++.++|...|.|++|+|| |+.||+|+.||+|++||-+++ ..
T Consensus 129 ~l~tGsGD~TvR~WD---------------~~TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg-~~ 191 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWD---------------LDTETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTG-QQ 191 (480)
T ss_pred eEEecCCCceEEeec---------------cCCCCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCC-Cc
Confidence 345555667777776 3456778999999999999999999 999999999999999998666 56
Q ss_pred eeeeeccCCCceeEEEeCC-----CCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCc
Q 013475 182 LARVLNFHSAAVNDVKWSQ-----QGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255 (442)
Q Consensus 182 ~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~ 255 (442)
....+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+. |...|+|++|-- ..+|++|+.|++
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~Drt 269 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRT 269 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCce
Confidence 6778999999999999987 56799999999999999999999999888 999999999974 469999999999
Q ss_pred EEEEECCCCceEEEeccCCCCEeEEEEe-----------eCCC-------------------------EEEeccCCCCCc
Q 013475 256 LRLWDIRTGKVAHEYIQSLGPILDVEFT-----------INGK-------------------------QFVSSSDVSGSN 299 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-------------------------~l~~~~~~~~~~ 299 (442)
|++|+...|.+++++++|...|+.++++ +.++ .++++++
T Consensus 270 Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD----- 344 (480)
T KOG0271|consen 270 IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD----- 344 (480)
T ss_pred EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC-----
Confidence 9999999999999999999999999887 2233 4999998
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
|.++.+|+-...+........|...+..+.|+|+++++++++-|+.|++|+.+++..+ ..+++|. ..|..++|
T Consensus 345 --d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---asfRGHv--~~VYqvaw 417 (480)
T KOG0271|consen 345 --DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---ASFRGHV--AAVYQVAW 417 (480)
T ss_pred --CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh---hhhhhcc--ceeEEEEe
Confidence 9999999988777666666778889999999999999999999999999999998776 4455554 66899999
Q ss_pred ccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 380 SLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 380 s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|.++|++|+.|.+++|||+++.++...+.+|.+.|.++.|+||| ..+++|+.|..+++|-
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG-~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG-QRVASGGKDKVLRLWR 479 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC-ceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999 7999999999999993
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-50 Score=333.82 Aligned_cols=294 Identities=20% Similarity=0.270 Sum_probs=255.4
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
..-.++...+.||.+.|.|++|+|+ |..|++|+.|.++++||+.+ ..+..+.++|...|.|++|+|||+.|++|+.|
T Consensus 102 rpvtrCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~T--eTp~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 102 RPVTRCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDT--ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred cccceeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCC--CCcceeecCCccEEEEEEECCCcchhhccccC
Confidence 3346778889999999999999998 99999999999999999955 58889999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEE-eee-CCcceEEEEEccC----CCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC
Q 013475 212 CSSRLVDVEKGIETQ-SFR-EELAVRVVKFHPE----NSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~-~~~-~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
|+|++||.++|+++. .+. |...|++++|.|- +..+|++++.||.|+|||+..++++..+.+|..+|+|+.|-.+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 999999999987764 444 8999999999763 2468999999999999999999999999999999999999754
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEec-----------CCC------------------
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHH-----------PFD------------------ 336 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~------------------ 336 (442)
.++++++. |++|++|+...+.... ....|...|..++.+ +.+
T Consensus 259 -gliySgS~-------DrtIkvw~a~dG~~~r-~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 259 -GLIYSGSQ-------DRTIKVWRALDGKLCR-ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred -ceEEecCC-------CceEEEEEccchhHHH-hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 48899998 9999999998876543 344566666666654 333
Q ss_pred -------CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee
Q 013475 337 -------PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI 409 (442)
Q Consensus 337 -------~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 409 (442)
..+++|+.|.++.+|+.....+. +.... .|...|..+.||||++|||+++.|..|++||.++|+.+.+|
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkp--i~rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKP--ITRMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccc--hhhhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence 34999999999999998765422 12333 44467899999999999999999999999999999999999
Q ss_pred eccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 410 KAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 410 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++|-..|+.++|+.|. ++|++|+.|.+|+|||
T Consensus 406 RGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWD 437 (480)
T ss_pred hhccceeEEEEeccCc-cEEEEcCCCceEEEEE
Confidence 9999999999999998 8999999999999997
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-48 Score=328.23 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=263.5
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC--CCEEEEEecCCcEEEE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ--GLFVLSCGYDCSSRLV 217 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~v~vw 217 (442)
.--|-+.+|..+.|+.| ++.|+||+.+|.++||+. .+...+.++.+|...|.++.|+|. +..|++|+.||++++|
T Consensus 170 SQ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~--~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSV--PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhccCCCcceeeEeecC-CCeEEEeecCCceeEeec--CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 33467789999999999 999999999999999999 445889999999999999999995 6789999999999999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
++++...+..+. |...|..++|+|+| ++|++++.|.+-++||++++..+....+|...|.+++|.+||..+++|+.
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl-- 323 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL-- 323 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc--
Confidence 999999999988 88999999999997 99999999999999999999988888999999999999999999999998
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
|..-+|||++++.++..+.. |...|..+.|+|+|..+++|+.|++++|||++....+ . ....|...|+.
T Consensus 324 -----D~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l---y--~ipAH~nlVS~ 392 (459)
T KOG0272|consen 324 -----DSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL---Y--TIPAHSNLVSQ 392 (459)
T ss_pred -----cchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccc---e--ecccccchhhh
Confidence 99999999999998876655 7789999999999999999999999999999987653 2 23355577999
Q ss_pred EEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|+| .|.+|++++.|++++||...++.+++.+.+|++.|.++.+++++ ++++|++.|.++++|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 99998 88999999999999999999999999999999999999999999 8999999999999994
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-46 Score=301.10 Aligned_cols=291 Identities=19% Similarity=0.312 Sum_probs=261.2
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
-+..++|+||.+.|+++.|++| .++|++++.||.+.|||..+. ...+.++-....|..++|+|.+++++.|+.|+..
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 3445899999999999999999 999999999999999998665 4455555568899999999999999999999999
Q ss_pred EEEECCCC------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CC
Q 013475 215 RLVDVEKG------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NG 286 (442)
Q Consensus 215 ~vwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~ 286 (442)
.||++.+. ...+.+. |.+.+.|+.|..| ..|++++.|.+..+||+++++.+..|.+|.+.|.++.++| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999854 2334444 8999999999986 5789999999999999999999999999999999999999 99
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
+.|++|+. |+..++||++.+...+ ....|...|..+.|+|+|.-|++|+.|++.++||++....+. .+.
T Consensus 200 ntFvSg~c-------D~~aklWD~R~~~c~q-tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a---~ys 268 (343)
T KOG0286|consen 200 NTFVSGGC-------DKSAKLWDVRSGQCVQ-TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA---VYS 268 (343)
T ss_pred CeEEeccc-------ccceeeeeccCcceeE-eecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe---eec
Confidence 99999998 9999999999996654 445677799999999999999999999999999999887664 344
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.......|++++||..|++|++|..|..+.+||.-.++.+..+.+|++.|+++..+||| ..|+||++|.+||||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 44555679999999999999999999999999999999999999999999999999999 8999999999999995
No 6
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-44 Score=300.31 Aligned_cols=317 Identities=21% Similarity=0.342 Sum_probs=276.5
Q ss_pred hhhhHhhhhhhcCCCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-cceeeeecc
Q 013475 110 AYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNF 188 (442)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~ 188 (442)
.++-....+....+.+..+.+..+|.+..+.|..|++.|+-+.||++ |+|||+++.|.+..+|++.... .++.+++.+
T Consensus 189 ~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg 267 (519)
T KOG0293|consen 189 SCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVG 267 (519)
T ss_pred HhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeec
Confidence 33334444556667777777788899999999999999999999999 9999999999999999985442 467888999
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeC--CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE--ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV 266 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 266 (442)
|..+|..+.|+||.++|++|+.|..+++||+.+|.....+.+ ...+.+++|.||| ..+++|+.|+.|..||+. |+.
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlD-gn~ 345 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLD-GNI 345 (519)
T ss_pred ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCC-cch
Confidence 999999999999999999999999999999999999988884 4889999999997 789999999999999985 555
Q ss_pred EEEeccCC-CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 267 AHEYIQSL-GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 267 ~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
+..+.+.. ..|.+++..+||+++++... |..|++|+..+..... ...+...++++..+.+++++++.-.+
T Consensus 346 ~~~W~gvr~~~v~dlait~Dgk~vl~v~~-------d~~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 346 LGNWEGVRDPKVHDLAITYDGKYVLLVTV-------DKKIRLYNREARVDRG--LISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred hhcccccccceeEEEEEcCCCcEEEEEec-------ccceeeechhhhhhhc--cccccCceeEEEEcCCCcEEEEEccc
Confidence 56665543 46899999999999999998 9999999998754433 33455689999999999999999999
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
..+.+||+.....+ ..+.+|....++..-+|.- +..++++|++|+.|+||+..+++++..+.||...|++++|+|.
T Consensus 417 qei~LWDl~e~~lv---~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 417 QEIHLWDLEENKLV---RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred CeeEEeecchhhHH---HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 99999999965444 6677787778888888876 5589999999999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCcEEEc
Q 013475 425 LPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 425 ~~~~l~s~~~dg~i~iw 441 (442)
.+.++|++|+||+||||
T Consensus 494 ~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIW 510 (519)
T ss_pred CHHHhhccCCCCeEEEe
Confidence 99999999999999999
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-42 Score=274.85 Aligned_cols=289 Identities=21% Similarity=0.247 Sum_probs=247.8
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc---ceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ---KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
.+..+|++|++.|+.++..+.+...|++++.|.++.+|++...+. ...+.+.||...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 455689999999999999998788999999999999999965543 45889999999999999999999999999999
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC--CCCEeEEEEeeC--CC
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS--LGPILDVEFTIN--GK 287 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~--~~ 287 (442)
++++||+.+++..+.|. |...|.+++|++|+ ..+++|+.|.+|++|++.. .+..++..+ .+.|.|+.|+|+ .-
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999999999998 99999999999995 8999999999999999864 444555443 689999999998 68
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
+|++++. |++|++||+++.+.. .....+...++.+.++|||..++.|+.|+.+.+||++.+..+..
T Consensus 164 ~Ivs~s~-------DktvKvWnl~~~~l~-~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys------ 229 (315)
T KOG0279|consen 164 IIVSASW-------DKTVKVWNLRNCQLR-TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS------ 229 (315)
T ss_pred EEEEccC-------CceEEEEccCCcchh-hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe------
Confidence 8999998 999999999986544 44556778899999999999999999999999999998866422
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc---------CCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY---------EQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
..+...|.+++|+|+.-.|+.+.. ..|+|||++++.++.+++.. .-...+++|+++| ..|+.|-.|+.|
T Consensus 230 l~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 LEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVI 307 (315)
T ss_pred ccCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcE
Confidence 244467899999999766666654 45999999999887776522 2245678999999 799999999999
Q ss_pred EEcC
Q 013475 439 SVYE 442 (442)
Q Consensus 439 ~iwd 442 (442)
++|+
T Consensus 308 rv~q 311 (315)
T KOG0279|consen 308 RVWQ 311 (315)
T ss_pred EEEE
Confidence 9995
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=280.93 Aligned_cols=293 Identities=26% Similarity=0.407 Sum_probs=259.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
..+..+.+|++.|+.+.|+|+ |.+||+|+.|..|.+|++... .+-...+++|.+.|..+.|..|++.|++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 345677899999999999998 999999999999999997543 566777889999999999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
.||+++|++.++++ |..-|+.+.-..-|..++.+++.||++++||+++...++++.. ...++++.|..++..+.+|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc
Confidence 99999999999999 8888888887777778899999999999999998888777643 367899999999999999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc-ceeEeecccc--
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK-FKRYESHGVS-- 371 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~-- 371 (442)
|+.|++||++..... .....+...|+.+..+++|.++++-+.|+++++||++.-..... ++.+.++.+.
T Consensus 195 -------dn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 195 -------DNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred -------cCceeeeccccCcce-EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 999999999987654 44556777999999999999999999999999999987554443 5666665543
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.....++|+|+++++.+|+.|..+++||......+..+.+|.+.|++++|+|.. .+|.+++.|.+|++
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~l 334 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYL 334 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEe
Confidence 345678999999999999999999999999889999999999999999999998 69999999999876
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.1e-42 Score=268.62 Aligned_cols=270 Identities=19% Similarity=0.320 Sum_probs=238.3
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc--EEEeee-CCcce
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI--ETQSFR-EELAV 234 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~-~~~~v 234 (442)
.-+|++++.|.+|++|...+ +.+..+++...+.|+.+...|+++.|++++ ...|++||++++. .+..|. |...|
T Consensus 10 ~viLvsA~YDhTIRfWqa~t--G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT--GICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred ceEEEeccCcceeeeeehhc--CeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCce
Confidence 45899999999999999954 599999997778999999999999999888 5669999999875 577777 78999
Q ss_pred EEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 235 RVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
+.+.|..+| +.+++|++||+++|||++...+.+.+. +..+|+++..+|+...|+++.. +|.|++||+.+..
T Consensus 87 taVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dq-------sg~irvWDl~~~~ 157 (311)
T KOG0315|consen 87 TAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQ-------SGNIRVWDLGENS 157 (311)
T ss_pred EEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecC-------CCcEEEEEccCCc
Confidence 999999997 999999999999999999865555554 5599999999999999999998 9999999999987
Q ss_pred ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc---cceeEeecccccCcEEEEEccCCCEEEEecC
Q 013475 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD---KFKRYESHGVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
............+.++...|+|.+++++.+.|..++|++-...... .+.+++ .+.+++..+.+|||++||++++.
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccceEEEEEECCCCcEEEeecC
Confidence 7777777777899999999999999999999999999987754332 223333 45588999999999999999999
Q ss_pred CCcEEEEecCCc-eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 392 DGSIYFYNCRSS-ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 392 dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.+++||+.++. +....+++|...+++++||.|+ .+|+|++.|+.+++||
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWD 286 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecc
Confidence 999999999887 6677889999999999999999 8999999999999997
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=279.40 Aligned_cols=300 Identities=21% Similarity=0.317 Sum_probs=263.4
Q ss_pred CCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC
Q 013475 123 LPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG 202 (442)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 202 (442)
.+...-.+|..|.++.+.+++|.+.|.|+++.|. ..+|++|+.|++|+|||+.+ +++..++.+|-..|..+++++..
T Consensus 129 ~~~~~rPeWHapwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlat--g~LkltltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 129 ASRMPRPEWHAPWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLAT--GQLKLTLTGHIETVRGVAVSKRH 205 (460)
T ss_pred cccCCCccccCcceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEccc--CeEEEeecchhheeeeeeecccC
Confidence 3444556789999999999999999999999999 89999999999999999955 58889999999999999999999
Q ss_pred CEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEE
Q 013475 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVE 281 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 281 (442)
.||++++.|+.|+.||++..+.++.+. |-..|.|+..+|.- ..|++|+.|.++++||+++...+..+.+|..+|.++.
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 999999999999999999999998887 88999999999984 8999999999999999999999999999999999999
Q ss_pred EeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 282 FTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
+.+-.-.+++++. |++|++||++.++..... ..+...+.+++.+|....|++++.| .|+-|++..+..+..
T Consensus 285 ~~~~dpqvit~S~-------D~tvrlWDl~agkt~~tl-t~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 285 CQPTDPQVITGSH-------DSTVRLWDLRAGKTMITL-THHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred eecCCCceEEecC-------CceEEEeeeccCceeEee-ecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 9998889999999 999999999998876554 4566789999999999888887765 578888887765533
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec--------cCCceeEEEEcCCCCCEEEEee
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA--------YEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
+. .+...+..++...|| ++++|+.+|.|.+||.++|-..+.++. .+..|.+.+|...+ ..|+||.
T Consensus 356 ---ls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg-~rlit~e 428 (460)
T KOG0285|consen 356 ---LS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG-SRLITGE 428 (460)
T ss_pred ---cc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC-ceEEecc
Confidence 33 344667888888776 889999999999999999866655531 24578999999998 7999999
Q ss_pred CCCcEEEcC
Q 013475 434 WNGDVSVYE 442 (442)
Q Consensus 434 ~dg~i~iwd 442 (442)
.|.+|++|.
T Consensus 429 adKtIk~~k 437 (460)
T KOG0285|consen 429 ADKTIKMYK 437 (460)
T ss_pred CCcceEEEe
Confidence 999999993
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-43 Score=293.75 Aligned_cols=256 Identities=27% Similarity=0.391 Sum_probs=230.4
Q ss_pred ccccccC-CcceecccccccceEEEEeeCC-CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE
Q 013475 128 VRRSKIP-GRLSTALCHHTKAVNSINWSPT-HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV 205 (442)
Q Consensus 128 ~~~~~~~-~~~~~~l~~h~~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 205 (442)
+..|..+ ...+++|.||++.|.++.|+|. ++..||||+.||++++|++++ ..++..+.+|...|..++|+|+|++|
T Consensus 199 ~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 199 VKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGKFL 276 (459)
T ss_pred eeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--CcchhhhhcchhhheeeeecCCCcee
Confidence 3344433 4678899999999999999998 477899999999999999944 48889999999999999999999999
Q ss_pred EEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee
Q 013475 206 LSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 206 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 284 (442)
+|++.|.+-++||++++..+...+ |...|.+++|++|| .++++|+.|..-+|||+++++++..+.+|..+|.++.|+|
T Consensus 277 ~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP 355 (459)
T KOG0272|consen 277 GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP 355 (459)
T ss_pred eecccccchhhcccccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECC
Confidence 999999999999999998776666 99999999999997 8999999999999999999999999999999999999999
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccccce
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 363 (442)
+|-.+++|+. |++++|||++....+ .....|..-|..+.|+| .|.+|++++.|+++++|...+...+ +
T Consensus 356 NGy~lATgs~-------Dnt~kVWDLR~r~~l-y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~---k 424 (459)
T KOG0272|consen 356 NGYHLATGSS-------DNTCKVWDLRMRSEL-YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL---K 424 (459)
T ss_pred CceEEeecCC-------CCcEEEeeecccccc-eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc---h
Confidence 9999999998 999999999988774 44456777899999998 7889999999999999999987766 5
Q ss_pred eEeecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 364 RYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 364 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
.+.+|. +.|.++.+++|+.+|++++.|.++++|.
T Consensus 425 sLaGHe--~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHE--GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCc--cceEEEEeccCCceEEEeccCceeeecc
Confidence 555554 7799999999999999999999999995
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8e-41 Score=263.04 Aligned_cols=277 Identities=21% Similarity=0.354 Sum_probs=242.4
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
...+.+.++++...+.|+.+...|+ +++||+++. ..|++||+.+.+..++.++.+|++.|+.+.|..+|+++++|++|
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence 4578999999999999999999999 888988875 68999999988888999999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-CCCCEeEEEEeeCCCEEE
Q 013475 212 CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-SLGPILDVEFTINGKQFV 290 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~ 290 (442)
|+++|||++...+.+.+++..+|+++..+|+ ...|++|..+|.|++||+.+..+...+.. ....|.++...+||.+++
T Consensus 105 gt~kIWdlR~~~~qR~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred ceEEEEeccCcccchhccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 9999999999999999999999999999998 58899999999999999998866665543 346899999999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccce-----eeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSK-----QVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
.+.. .|+.++|++-+...... ....+...+....++|++++|++++.|.+++||+.++..+.. ..+
T Consensus 184 a~nn-------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle--~~l 254 (311)
T KOG0315|consen 184 AANN-------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE--LVL 254 (311)
T ss_pred EecC-------CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE--EEe
Confidence 9998 99999999977443222 223455678889999999999999999999999999873321 233
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
. .+...+..++||.||.||++|+.|+.+++||+..++.+..+.+|.....+++.+
T Consensus 255 ~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 255 T--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred e--cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 3 445789999999999999999999999999999999999999998887777654
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-41 Score=277.31 Aligned_cols=290 Identities=21% Similarity=0.329 Sum_probs=259.4
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
..+.+.+.+|...|+.+-|+|+ ..++++++.|++|++||..++ .+...+++|++.|.+|+|+..|++|++++.|-.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 3677888999999999999999 889999999999999999554 7789999999999999999999999999999999
Q ss_pred EEEECCC-CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec
Q 013475 215 RLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 215 ~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (442)
++||.++ .++++... |+..|.++.|-|.| +++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 9999987 34454444 88999999999997 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC---------------CCeeEEEeCCCeEEEeeCCCCc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF---------------DPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
+. |.+|++|-+.++.+.. ....+...+.+++|.|. +.++.+++.|++|++||+.++.
T Consensus 254 s~-------dqtl~vW~~~t~~~k~-~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 254 SN-------DQTLRVWVVATKQCKA-ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred CC-------CceEEEEEeccchhhh-hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 98 9999999999875433 33455667888887664 2588899999999999999986
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCc
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 437 (442)
++ .++. +|...|..++|+|.|+||+++..|+++++||+++++++..+..|...|+++.|+.+.+ +++||+-|..
T Consensus 326 cL---~tL~--ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt 399 (406)
T KOG0295|consen 326 CL---FTLV--GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQT 399 (406)
T ss_pred EE---EEEe--cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-eEEeccccce
Confidence 65 3444 4457899999999999999999999999999999999999999999999999999984 9999999999
Q ss_pred EEEcC
Q 013475 438 VSVYE 442 (442)
Q Consensus 438 i~iwd 442 (442)
+++|+
T Consensus 400 ~KvwE 404 (406)
T KOG0295|consen 400 VKVWE 404 (406)
T ss_pred eeeee
Confidence 99995
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=284.19 Aligned_cols=283 Identities=20% Similarity=0.313 Sum_probs=246.3
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
..-+..|..|.|.|+ |+.|++|+..|.+.+|+. ........+..|...|+++.|++++.++++|+.+|.|++|+..-
T Consensus 93 NKvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg--~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNG--TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccccceeeEEEcCC-CceeEeecccccEEEecC--ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 344568999999999 999999999999999997 33345556778999999999999999999999999999999875
Q ss_pred CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 222 GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 222 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
........ |...|.+++|+|++ ..|++++.||+|+|||....+....+.+|.-.|.++.|+|....+++++.
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk------ 242 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK------ 242 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC------
Confidence 54433333 55899999999975 88999999999999999999888889999999999999999999999998
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
|..|++||.+++.++.++. .|...|..+.|.+++++|++++.|..+++||++....+ ..+++| ...++++.|+
T Consensus 243 -DnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl---~~~r~H--kkdv~~~~Wh 315 (464)
T KOG0284|consen 243 -DNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL---FTYRGH--KKDVTSLTWH 315 (464)
T ss_pred -CceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH---HHhhcc--hhhheeeccc
Confidence 9999999999999887654 56668999999999999999999999999999954443 444444 4668999999
Q ss_pred c-CCCEEEEecCCCcEEEEecCCceeeEee-eccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 381 L-DGEKLVSGSSDGSIYFYNCRSSELERKI-KAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 381 ~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
| ...+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-| .+|++|+.|.++++|.
T Consensus 316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWT 378 (464)
T ss_pred cccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc-eeEeecCCCcceeeec
Confidence 9 6688999999999999999866666555 4799999999999999 8999999999999994
No 15
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-40 Score=255.34 Aligned_cols=289 Identities=20% Similarity=0.319 Sum_probs=255.9
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
..|.+..+.|..|++.|.++.|+-| |+|.++++.|++|++|+. ....+++++.+|...|..++.+.|+..|++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp--~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNP--LRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecc--cccceeeeecCCCceeeeccccccccccccCCCC
Confidence 4567778899999999999999999 999999999999999998 5569999999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC--ceEEEeccCCCCEeEEEEeeCCCE
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG--KVAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
..|.+||+++|+..+.+. |...|+.++|+.+ ...+++|+.|..+++||.++. ++++.+......|.++... +..
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 999999999999999999 9999999999998 599999999999999999864 6788888888899888874 778
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
+++|+. ||+++.||++.+.... .....+|+++.|+++++..++++.++++++.|..++..+ +.+.+|
T Consensus 158 IvaGS~-------DGtvRtydiR~G~l~s---Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL---~sYkGh 224 (307)
T KOG0316|consen 158 IVAGSV-------DGTVRTYDIRKGTLSS---DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL---KSYKGH 224 (307)
T ss_pred EEeecc-------CCcEEEEEeecceeeh---hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH---HHhccc
Confidence 999998 9999999999886443 234568999999999999999999999999999998776 566777
Q ss_pred ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCc-eeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQA-CIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
....+-..++++....++++|++||.|++||+.....+..+..+... |.++.++|... -|+++. ++.+..|
T Consensus 225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITAT-GHGDLFW 296 (307)
T ss_pred ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEec-CCceece
Confidence 77777788999999999999999999999999999999999988776 89999999984 455553 3445555
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-39 Score=269.42 Aligned_cols=289 Identities=19% Similarity=0.317 Sum_probs=249.0
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
...+.+|..|++.|++++.+|+ .++++||+.|..-.||++.++ .....+.+|...|+++.|+.+|.+|+||+.+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 4557889999999999999997 999999999999999999555 5888899999999999999999999999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+||+..++.....+. .-..+.-+.|||.+ .+|+.|+.||.+..|.+.++...+.+.+|..++++-.|.|+|+.++++.
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence 999999998888886 66778999999985 9999999999999999999888899999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccce-----------------------------------------------
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYT----------------------------------------------- 326 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------------------- 326 (442)
. ||+|++||..++.++..+.......
T Consensus 210 ~-------dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 210 D-------DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred c-------CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 8 9999999999887665544111110
Q ss_pred ---eee---EEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 327 ---CPC---VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 327 ---~~~---~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
+.+ +.++..-++.++|+-||+|.|||+..... +... .+...|+.+.|-+ ..+|++++.||.|+.||.
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----RHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchh----heec--cCCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 111 22222334667788899999999876432 2222 3445699999998 789999999999999999
Q ss_pred CCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 401 RSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++|+++.++.+|...|.+++++|+. ++++|+|.|++.+||+
T Consensus 356 RtG~l~~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFE 396 (399)
T ss_pred cccceEEEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEe
Confidence 9999999999999999999999998 8999999999999985
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=302.56 Aligned_cols=293 Identities=27% Similarity=0.461 Sum_probs=256.5
Q ss_pred ceeccccc-ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 137 LSTALCHH-TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 137 ~~~~l~~h-~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
....+.+| ...|.++.|+++ |++|++++.|+.+++|+.......+...+.+|...|++++|+++++++++++.|++|+
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 35566555 889999999999 8889999999999999995443236677788999999999999999999999999999
Q ss_pred EEEC-CCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 216 LVDV-EKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 216 vwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
|||+ ..+..+++++ |...|++++|+|++ +++++|+.|++|+|||+++++++..+.+|.+.|++++|++++++|++++
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 9999 5568888887 99999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCc--ccceeeccccc-eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc
Q 013475 294 DVSGSNMSENSIVVWDVSREV--PLSKQVYVEAY-TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
. |+.|++||+.++. ........... .+.++.|+|++.++++++.|+.+++|++...... ..+.+|..
T Consensus 308 ~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~---~~~~~~~~ 377 (456)
T KOG0266|consen 308 Y-------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV---GTYTGHSN 377 (456)
T ss_pred C-------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce---eeecccCC
Confidence 8 9999999999988 34444444444 7899999999999999999999999999987665 33444433
Q ss_pred c-cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-CCceeEEEEcCCCCCEEEEee--CCCcEEEcC
Q 013475 371 S-GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-EQACIDVAFHPILPNIIGSCS--WNGDVSVYE 442 (442)
Q Consensus 371 ~-~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd 442 (442)
. ..+.+..+++.|.++++|+.|+.|++||+.++..+..+.+| ...+..+.|++.. .++++++ .|+.+++|.
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEec
Confidence 2 12334556789999999999999999999999999999999 8999999999998 7999988 789999994
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=254.16 Aligned_cols=288 Identities=21% Similarity=0.295 Sum_probs=239.5
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc-CCcceeeee-ccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS-RDQKLARVL-NFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
..++.+++|.+.|..++|+|-.|.+||+++.|+.|+||+... ....+...+ .+|+..|++++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 456789999999999999997677999999999999999863 234455444 369999999999999999999999999
Q ss_pred EEEEECCCC--cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC---ceEEEeccCCCCEeEEEEeeCCC
Q 013475 214 SRLVDVEKG--IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG---KVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 214 v~vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
+.||.-..+ +++..++ |...|.|++|+.+| ++|++++.|..|.||.+..+ ++...++.|...|..+.|+|...
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 999987754 6677777 99999999999997 99999999999999998744 46778899999999999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCc--ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREV--PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
+|++++. |++|++|+-.... ........+...+.++.|++.|..|++++.|++++||.......
T Consensus 164 lL~S~SY-------DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~------- 229 (312)
T KOG0645|consen 164 LLFSCSY-------DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS------- 229 (312)
T ss_pred eeEEecc-------CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc-------
Confidence 9999999 9999999877322 22333445556999999999999999999999999998653221
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc------eeeE-eeeccCCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS------ELER-KIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
..+...+..+.|. ...|++++.|+.|++|.-... +++. .-..|+..|++++|+|..+.+|++|++||.|
T Consensus 230 --~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 230 --GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred --hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceE
Confidence 2334557788887 458999999999999976542 2222 3357888999999999756899999999999
Q ss_pred EEcC
Q 013475 439 SVYE 442 (442)
Q Consensus 439 ~iwd 442 (442)
++|.
T Consensus 306 ~~W~ 309 (312)
T KOG0645|consen 306 NFWE 309 (312)
T ss_pred EEEE
Confidence 9994
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-39 Score=276.30 Aligned_cols=277 Identities=20% Similarity=0.428 Sum_probs=245.6
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
+..|++++|+.+ |.+||+|+.||.++||+. .+.++.++..|.++|.++.|+.+|+||++++.|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~---~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNND-GTLLATGSEDGEARIWNK---DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCC-CCeEEEeecCcEEEEEec---CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 368999999999 999999999999999995 4678889999999999999999999999999999999999999999
Q ss_pred EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 225 TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
.+.|. |......+.|-.+ .-|++++.|+.|+++.+....++.++.+|.++|.++.|+|.|.+|+++++ |+
T Consensus 311 ~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd-------D~ 381 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD-------DG 381 (524)
T ss_pred EEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC-------CC
Confidence 99999 5555578899865 67899999999999999999999999999999999999999999999999 99
Q ss_pred eEEEEeCCCCcccceeeccccceeeeEEecCCCC---------eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP---------YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
+++||++........+ ..|...|..+.|+|.+. .+++++.|++|++||...+..+ ..+..| ...|
T Consensus 382 TlkiWs~~~~~~~~~l-~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i---~~f~kH--~~pV 455 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDL-QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI---HTLMKH--QEPV 455 (524)
T ss_pred eeEeeecCCCcchhhh-hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee---EeeccC--CCce
Confidence 9999998876655443 34555788889988753 6888999999999999998776 334444 4679
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+++|+|+|+|+|+|+.||.|.||+.+++++++.+.+ .+.|..++|+.+| ..|..+-.||.+++-|
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLD 521 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEE
Confidence 9999999999999999999999999999999999986 6679999999999 6888888899988754
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-40 Score=300.70 Aligned_cols=255 Identities=22% Similarity=0.356 Sum_probs=231.9
Q ss_pred ccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC-----------------------------Cc
Q 013475 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-----------------------------DQ 180 (442)
Q Consensus 130 ~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~-----------------------------~~ 180 (442)
+...|.-+..++..-...++|..|++| +.+||.|-.|..|++|.+... ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 346677888888888899999999999 889999999999999998521 01
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
....++-+|.++|+.+.|+|+.++|++++.|++|++|.+.+..++..++ |..+|+++.|+|.| .+|++++.|++-++|
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLW 520 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLW 520 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeee
Confidence 2334577899999999999999999999999999999999999999998 89999999999996 999999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCee
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYF 339 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 339 (442)
.....++++.+.+|.+.|.|+.|+|+..|+++|+. |.+|++||+.++..+
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-------D~tVRlWDv~~G~~V----------------------- 570 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-------DRTVRLWDVSTGNSV----------------------- 570 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCC-------CceEEEEEcCCCcEE-----------------------
Confidence 99999999999999999999999999999999998 999999999987543
Q ss_pred EEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEE
Q 013475 340 VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDV 419 (442)
Q Consensus 340 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 419 (442)
+.+.+ |.+.|++++|||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++
T Consensus 571 -----------------------RiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl 625 (707)
T KOG0263|consen 571 -----------------------RIFTG--HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL 625 (707)
T ss_pred -----------------------EEecC--CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence 33333 45779999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCEEEEeeCCCcEEEcC
Q 013475 420 AFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|+.+| .+||+||.|++|++||
T Consensus 626 sFS~dg-~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 626 SFSRDG-NVLASGGADNSVRLWD 647 (707)
T ss_pred EEecCC-CEEEecCCCCeEEEEE
Confidence 999999 7999999999999997
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.6e-38 Score=279.99 Aligned_cols=287 Identities=25% Similarity=0.376 Sum_probs=253.2
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
++++++|.+.|++++|+|+ +++|++++.||.|++|++.+. .....+..|...+..+.|++++++|++++.||.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 4578899999999999999 899999999999999999544 4666777899999999999999999999999999999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
|+.+++....+. +...+.++.|++++ .++++++.++.|++||+++++....+..|...|.++.|++++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 999987777777 67789999999984 78888888999999999988888888889899999999999999999987
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
++.|++||++..+.+.... .+...+.++.|++++..+++++.++.+++||.........+ . .+...+.+
T Consensus 156 -----~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---~--~~~~~i~~ 224 (289)
T cd00200 156 -----DGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---R--GHENGVNS 224 (289)
T ss_pred -----CCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch---h--hcCCceEE
Confidence 9999999999776655544 45558999999999999999999999999999875444322 1 23356889
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|++++.++++++.||.|++||+.+++.+..+..|...|.+++|++++ .+|++++.||.|++||
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 9999999999999889999999999999999999999999999999998 7999999999999997
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-39 Score=255.53 Aligned_cols=255 Identities=17% Similarity=0.267 Sum_probs=218.7
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
-+..++.|.||+..|..+..++| |++.++++.|+++++||+.++ +..+.|.+|...|.+++|++|++.+++|+.|.+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT 128 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT 128 (315)
T ss_pred cCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcce
Confidence 46788999999999999999999 999999999999999999655 788889999999999999999999999999999
Q ss_pred EEEEECCCCcEEEeeeC--CcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 214 SRLVDVEKGIETQSFRE--ELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
|++||+..+.......+ ..-|.|++|+|+. ..+|++++.|++|++||+++.+....+.+|.+.++.+.++|||..++
T Consensus 129 iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 129 IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEe
Confidence 99999876644444443 6789999999984 57899999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee---
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES--- 367 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~--- 367 (442)
+|+. ||.+.+||++.++.+.. ..+...|.+++|+|+...|+.+ .+..|+|||++....+..++.-..
T Consensus 209 sGgk-------dg~~~LwdL~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 209 SGGK-------DGEAMLWDLNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred cCCC-------CceEEEEEccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccc
Confidence 9998 99999999999887443 4566689999999987666555 455599999999877654432111
Q ss_pred -cccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 368 -HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 368 -~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
.........++|+.||..|++|..|+.|++|.+.
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1113346688999999999999999999999874
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-38 Score=271.14 Aligned_cols=292 Identities=17% Similarity=0.228 Sum_probs=244.8
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec---cCCCceeEEEeCCCCCEEEEEec
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN---FHSAAVNDVKWSQQGLFVLSCGY 210 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~ 210 (442)
|.+...+++.|..-|+|+.|+|| |.++++++.||+|.|||=.++ +.+..+. +|.+.|.+++|+||++.|++++.
T Consensus 179 PFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred CeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 45677888999999999999999 999999999999999997544 5666666 89999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEeeeCCc----ceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCC
Q 013475 211 DCSSRLVDVEKGIETQSFREEL----AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (442)
|.+++|||+.+.++++++.... ....+.|- ...|++.+.+|.|.+++......++.+.+|...|+++..++++
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 9999999999999999987433 23344454 2578899999999999999999999999999999999999999
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccce-----------ee-----------------------------------
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSK-----------QV----------------------------------- 320 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-----------~~----------------------------------- 320 (442)
++|++++. ||.|.-||..++..-.. +.
T Consensus 333 ~~i~Sgsy-------DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg 405 (603)
T KOG0318|consen 333 KTIYSGSY-------DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG 405 (603)
T ss_pred CEEEeecc-------CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC
Confidence 99999999 99999999865321100 00
Q ss_pred ----------------------------------ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 321 ----------------------------------YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 321 ----------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
..-.....+++++|++..+++|+.|+.+++|.+........ ..
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---~~ 482 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---AK 482 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce---ee
Confidence 00011245678899999999999999999999998765422 22
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeE-eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELER-KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+.+.++.++||||+.||++|...+.+.+||+.+.+... .+.-|...|.+++|+|+. .++|||+.|-.|.||+
T Consensus 483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYS 558 (603)
T ss_pred eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEE
Confidence 33556889999999999999999999999999999877633 344589999999999998 8999999999999995
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-38 Score=268.73 Aligned_cols=294 Identities=22% Similarity=0.354 Sum_probs=248.3
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceee--eec----------cCCCceeEEEeC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR--VLN----------FHSAAVNDVKWS 199 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~----------~h~~~v~~l~~~ 199 (442)
.++....+.+. |+..|.+.+|+|-...+|++|+.|-+.++|++......... .++ ..+..|++++|+
T Consensus 166 ~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 166 EIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred cccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 34555566666 99999999999983448999999999999999541111111 111 134689999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeE
Q 013475 200 QQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 200 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
.+|..|++|+.||.+++|+.........-.|+++|.++.|+..| ++|++++.|+++.+||..+++..+.+..|..+-.+
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 99999999999999999997655444444499999999999996 99999999999999999999999999999888788
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
+.|-.+ ..|++++. |+.|+++.+....++.++.. |...|.++.|.|.+.+|++++.|++++||+.......
T Consensus 324 VdW~~~-~~F~ts~t-------d~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 324 VDWQSN-DEFATSST-------DGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred eEEecC-ceEeecCC-------CceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 999754 56777776 99999999999888887776 7789999999999999999999999999998877665
Q ss_pred ccceeEeecccccCcEEEEEccCC---------CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEE
Q 013475 360 DKFKRYESHGVSGFPIKCSFSLDG---------EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 430 (442)
..+. .|...|..+.|+|.| ..|++++.|++|++||+..+.++..|..|..+|.+++|+|++ .++|
T Consensus 395 ~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-~ylA 468 (524)
T KOG0273|consen 395 HDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-RYLA 468 (524)
T ss_pred hhhh-----hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-cEEE
Confidence 4333 344568888998865 478999999999999999999999999999999999999999 8999
Q ss_pred EeeCCCcEEEcC
Q 013475 431 SCSWNGDVSVYE 442 (442)
Q Consensus 431 s~~~dg~i~iwd 442 (442)
+|+.||.|.||+
T Consensus 469 sGs~dg~V~iws 480 (524)
T KOG0273|consen 469 SGSLDGCVHIWS 480 (524)
T ss_pred ecCCCCeeEecc
Confidence 999999999996
No 25
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=267.83 Aligned_cols=296 Identities=21% Similarity=0.333 Sum_probs=255.8
Q ss_pred cCCcceeccc-ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce------eeeeccCCCceeEEEeCCCCCEE
Q 013475 133 IPGRLSTALC-HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL------ARVLNFHSAAVNDVKWSQQGLFV 205 (442)
Q Consensus 133 ~~~~~~~~l~-~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~h~~~v~~l~~~~~~~~l 205 (442)
.|..+.+.++ +.++-+.|..|||| |+||++|+.||.|.+||..+++.+. ...+-.+...|.|+.|+.|...|
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred chHHhhhheecccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 3444555554 56678999999999 9999999999999999996553221 12233478999999999999999
Q ss_pred EEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 206 LSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 206 ~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
++|+.||.|++|.+++|.|++.|. |...|+|+.|+.|+ ..+++++.|.++++.-+++|++++++.+|.+.|+...|.
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 999999999999999999999998 89999999999996 788999999999999999999999999999999999999
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCccccc
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
+||.++++++. ||+|++|+..+.+++.++... ....+.++...|.+ ..++++...+++++.++.+...
T Consensus 358 ~dG~~iisaSs-------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV--- 427 (508)
T KOG0275|consen 358 DDGHHIISASS-------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV--- 427 (508)
T ss_pred CCCCeEEEecC-------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE---
Confidence 99999999998 999999999998888776543 45677888777755 5788899999999999876532
Q ss_pred ceeE-eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 362 FKRY-ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 362 ~~~~-~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
+.+ .+....+...+++.||.|.++++.++|+.++.|.+.+|++..++..|+..|..++-+|.. ++|++-+.||.+++
T Consensus 428 -rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKL 505 (508)
T KOG0275|consen 428 -RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKL 505 (508)
T ss_pred -eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCccc-chhhhhcccchhhh
Confidence 222 233344556788999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred cC
Q 013475 441 YE 442 (442)
Q Consensus 441 wd 442 (442)
|.
T Consensus 506 Wk 507 (508)
T KOG0275|consen 506 WK 507 (508)
T ss_pred cC
Confidence 94
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=247.18 Aligned_cols=284 Identities=18% Similarity=0.211 Sum_probs=246.3
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEEC
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~ 219 (442)
.|+||+.+++.+.|+.+ |.+|++++.|.+..||-. .+++.+-++.+|++.|.|++..-+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s--~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYS--LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEe--cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 57899999999999999 999999999999999987 455889999999999999999999999999999999999999
Q ss_pred CCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC-----CCcEEEEECC-------CCceEEEeccCCCCEeEEEEeeCCC
Q 013475 220 EKGIETQSFREELAVRVVKFHPENSNLFLSGGS-----KGLLRLWDIR-------TGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
++|+++..++....|..+.|+.+| ++++.... .+.|.++|++ ..++...+..+.+.++.+-|.+-++
T Consensus 82 ~tGk~la~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999999999999999999987 66655543 4679999998 3456778888889999999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
+|++|.. ||.|.+||++++..+......|...|..+.++++..++++++.|.+-++||..+...+. ++.
T Consensus 161 ~ii~Ghe-------~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~- 229 (327)
T KOG0643|consen 161 TIIAGHE-------DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYT- 229 (327)
T ss_pred EEEEecC-------CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eee-
Confidence 9999998 99999999999988877777888899999999999999999999999999999866553 332
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCc--------------EEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGS--------------IYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~--------------i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
....+.+.+++|...+++.|+.... -++|++-..+.+..+++|-++|++++|+|+| +..++|+
T Consensus 230 --te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGG 306 (327)
T KOG0643|consen 230 --TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGG 306 (327)
T ss_pred --ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-cccccCC
Confidence 2356889999998777777654321 2334444446678889999999999999999 7999999
Q ss_pred CCCcEEEc
Q 013475 434 WNGDVSVY 441 (442)
Q Consensus 434 ~dg~i~iw 441 (442)
.||.|+|.
T Consensus 307 EDG~VR~h 314 (327)
T KOG0643|consen 307 EDGYVRLH 314 (327)
T ss_pred CCceEEEE
Confidence 99999973
No 27
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=251.30 Aligned_cols=283 Identities=21% Similarity=0.258 Sum_probs=250.8
Q ss_pred ecccccccceEEEEeeC---CCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 139 TALCHHTKAVNSINWSP---THAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.+..||+.+|..++||| + |.+|++++.||.-.+-+-++ +.-+-++.+|.+.|.+...+.+...-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~-g~flisa~kd~~pmlr~g~t--gdwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPD-GYFLISASKDGKPMLRNGDT--GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCC-ceEEEEeccCCCchhccCCC--CCcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 45679999999999986 5 89999999999888877633 477889999999999999999988999999999999
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-eEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-VAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
|||.-+|..+..|.|+.-|..++|+.| .++|++|+.+..++|||++..+ +..++.+|.+.|..+.|....+.|+++.+
T Consensus 85 vw~a~tgdelhsf~hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 85 VWDAVTGDELHSFEHKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhhhhheeeeEEeccc-chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 999999999999999999999999998 5999999999999999998653 66788999999999999999999999888
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
|++|++||.+++..++.+...+ .+.++.++++|.++.++ ..+.|.+||..+-..+.. ......|
T Consensus 164 -------d~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs------~k~P~nV 227 (334)
T KOG0278|consen 164 -------DKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS------YKMPCNV 227 (334)
T ss_pred -------CCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceee------ccCcccc
Confidence 9999999999999887776544 68899999999876655 677899999887544422 2333557
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEecCCceeeEee-eccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI-KAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+..++|+...+++|++|+.++.||+.+++.+..+ ++|.++|.|+.|+|+| .+.++|+.||+|+||+
T Consensus 228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQ 295 (334)
T ss_pred ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEE
Confidence 88899999999999999999999999999998886 8999999999999999 7999999999999995
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.2e-36 Score=299.60 Aligned_cols=288 Identities=16% Similarity=0.245 Sum_probs=234.9
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC--c----ceeeeeccCCCceeEEEeCC-CCCEEEEEecCCc
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD--Q----KLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCS 213 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~--~----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~ 213 (442)
+.+|.+.|++++|+++ +++||+|+.|+.|+||++.... . .....+. +...|.+++|++ ++.+|++++.||+
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4569999999999999 9999999999999999974311 0 1222333 456899999987 5789999999999
Q ss_pred EEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEe-eCCCEEEe
Q 013475 214 SRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT-INGKQFVS 291 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~ 291 (442)
|++||+.+++.+..+. |...|++++|+|.+..+|++|+.||.|++||++++..+..+..+ ..|.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999998888887 88999999999754589999999999999999999888888755 678999995 57999999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc---cccceeEeec
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR---LDKFKRYESH 368 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---~~~~~~~~~~ 368 (442)
++. |+.|++||+++..........+...+.++.|. ++.++++++.|+.|++||+..... ...+..+.+|
T Consensus 636 gs~-------dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 636 GSA-------DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred EeC-------CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 998 99999999987654333444667788999997 688999999999999999875321 1223444444
Q ss_pred ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee-------------eccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI-------------KAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
...+..++|++++.+|++|+.||.|++|+......+..+ ..|...|.+++|++++ .+|++|+.|
T Consensus 708 --~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~d 784 (793)
T PLN00181 708 --TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANST 784 (793)
T ss_pred --CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCC
Confidence 456788999999999999999999999998655433221 2345679999999998 799999999
Q ss_pred CcEEEcC
Q 013475 436 GDVSVYE 442 (442)
Q Consensus 436 g~i~iwd 442 (442)
|.|+|||
T Consensus 785 G~I~i~~ 791 (793)
T PLN00181 785 GNIKILE 791 (793)
T ss_pred CcEEEEe
Confidence 9999997
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-36 Score=243.77 Aligned_cols=252 Identities=21% Similarity=0.315 Sum_probs=223.2
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC----CcceeeeeccCCCceeEEEeCCCCCEEEEEe
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR----DQKLARVLNFHSAAVNDVKWSQQGLFVLSCG 209 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 209 (442)
....++.+.--...|..++|+|. |+++|+|+.|+...||++.+. .....+.+.+|++.+.|+.|..| ..|++++
T Consensus 86 TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 86 TTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred cccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecC
Confidence 34455556666789999999999 999999999999999999744 22556778999999999999985 5789999
Q ss_pred cCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE
Q 013475 210 YDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
.|.+..+||+++++.+..|. |.+.|.++.+.|...+.|++|+-|+..++||++.+..+++|.+|...|++++|.|+|.-
T Consensus 164 GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a 243 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA 243 (343)
T ss_pred CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe
Confidence 99999999999999999999 99999999999955699999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
|++|++ |++.++||++....+..+.. .....+++++|+..|++|++|..|..+.+||.-.+... ..+.+
T Consensus 244 fatGSD-------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v---g~L~G 313 (343)
T KOG0286|consen 244 FATGSD-------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV---GVLAG 313 (343)
T ss_pred eeecCC-------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE---EEeec
Confidence 999999 99999999999776655543 33568999999999999999999999999998776654 44444
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
| ...|.++..+|||.-+++|+.|..++||.
T Consensus 314 H--eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 314 H--ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred c--CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 4 57799999999999999999999999994
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=267.17 Aligned_cols=283 Identities=18% Similarity=0.296 Sum_probs=255.5
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-CcEEEEECC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-CSSRLVDVE 220 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~v~vwd~~ 220 (442)
......|+|.+|++. .++|++|-..|.+.+|++ ....+++.+.-....|..++|+..|.+|+.|+.. |.+.||+..
T Consensus 262 n~~~~kvtaa~fH~~-t~~lvvgFssG~f~Lyel--P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKG-TNLLVVGFSSGEFGLYEL--PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred cccccceeeeeccCC-ceEEEEEecCCeeEEEec--CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 334488999999999 899999999999999999 7778999888777999999999999999998864 899999999
Q ss_pred CCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 221 KGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 221 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
+...+.+.+ |...+++++++||| .++++|+.||.|+|||..++-+..+|..|...|+.+.|+..|+.+++.+.
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL----- 412 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL----- 412 (893)
T ss_pred ccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec-----
Confidence 988777766 89999999999997 89999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC-eEEEeeCCCCcccccceeEeecccccCcEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN-YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCS 378 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 378 (442)
||+|+.||+.......++..+......|++..|.|..+++|+.|. .|++|++.++..+.. +. +|.+.|.+++
T Consensus 413 --DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi---Ls--GHEgPVs~l~ 485 (893)
T KOG0291|consen 413 --DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI---LS--GHEGPVSGLS 485 (893)
T ss_pred --CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh---hc--CCCCcceeeE
Confidence 999999999999999999999999999999999999999999887 699999999977643 34 4458899999
Q ss_pred EccCCCEEEEecCCCcEEEEecCCce-eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 379 FSLDGEKLVSGSSDGSIYFYNCRSSE-LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 379 ~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+|+|..|++|+.|.+|++||+-... .+.++. +...+..++|+|+| .-|+++..||.|.+||
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFD 548 (893)
T ss_pred EccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEE
Confidence 99999999999999999999986543 344444 57789999999999 7999999999999997
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=265.38 Aligned_cols=296 Identities=17% Similarity=0.260 Sum_probs=242.4
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
..|..+.+++.||-..|+++.|+.| .++|++|+.|-+++||+++..+......+.+|...|..+-|..+...+++.+.|
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred cCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 3456778899999999999999999 999999999999999999776666677889999999999999999999999999
Q ss_pred CcEEEEECCC-----------------------CcE-----E-Eee-e-----CCcceEEEEEccCCCCEEEEeeCC---
Q 013475 212 CSSRLVDVEK-----------------------GIE-----T-QSF-R-----EELAVRVVKFHPENSNLFLSGGSK--- 253 (442)
Q Consensus 212 ~~v~vwd~~~-----------------------~~~-----~-~~~-~-----~~~~v~~~~~~~~~~~~l~~~~~d--- 253 (442)
|.+.+|.... ++. . ... + ....|++.+||+. .++|++|-..
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~-t~~lvvgFssG~f 289 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG-TNLLVVGFSSGEF 289 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCC-ceEEEEEecCCee
Confidence 9999998761 111 0 000 0 1244555555553 3444443333
Q ss_pred ----------------------------------------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 254 ----------------------------------------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 254 ----------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
|.+.||+..+...+.+.++|...+++++++|||+++++|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 5666666666666667788999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
. ||.|+|||...+-+..++. .|...++.+.|+..++.+++.+-||+|+.||+...... +++.... ...
T Consensus 370 e-------DgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~-p~Q 437 (893)
T KOG0291|consen 370 E-------DGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPE-PIQ 437 (893)
T ss_pred C-------CCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCC-cee
Confidence 9 9999999999988776654 45668999999999999999999999999999876554 3333322 233
Q ss_pred cEEEEEccCCCEEEEecCCC-cEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 374 PIKCSFSLDGEKLVSGSSDG-SIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
..+++..|.|.++.+|+.|. .|+||++++|+++..+.+|+++|.+++|+|++ ..|+++++|.+||+||
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWD 506 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEE
Confidence 56888899999999999876 59999999999999999999999999999999 7999999999999997
No 32
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-35 Score=234.33 Aligned_cols=279 Identities=19% Similarity=0.279 Sum_probs=241.4
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vw 217 (442)
+.+++|.+.|.+|+|+-+ |..|++|+.|+++.+|+++...........+|.+.|-.++|+| +...|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 678899999999999999 9999999999999999997665555556778999999999998 56789999999999999
Q ss_pred ECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 218 DVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 218 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
|+..+++...+.....=.-+.|+|+| .++++++.|..|.+.|.++.+.....+.. ..++.++|+.++++|+....
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~G--- 167 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNG--- 167 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhccc-ceeeeeeecCCCCEEEEecC---
Confidence 99999999999977776779999997 89999999999999999988877665433 56788899888887777665
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEE
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
.|.|.|.....-+++..+.. |...+.|+.|+|+|++|++|+.|..+.+||++...+...+..+ .-.|..+
T Consensus 168 ----lG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-----dwpVRTl 237 (313)
T KOG1407|consen 168 ----LGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-----DWPVRTL 237 (313)
T ss_pred ----CceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-----cCceEEE
Confidence 79999999987777766554 4578999999999999999999999999999987766544433 2458899
Q ss_pred EEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
.||.||++||++++|..|-|=++++|..+.+++ +.++...++|+|.. .+||-+++|
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~-~LLAyA~dd 293 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR-PLLAYACDD 293 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC-ceeeEEecC
Confidence 999999999999999999999999999999987 58899999999998 688877655
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-36 Score=273.22 Aligned_cols=210 Identities=22% Similarity=0.372 Sum_probs=195.4
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
.....+|.||+++|+.+.|+|+ .++|++++.|++||+|.+ .....+-.+++|..+|.++.|+|.|.||+|++.|++.
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl--~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSL--DTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred CceeEEeecCCCceeeeeeccc-ccceeeccCCcceeeeec--ccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 3455669999999999999999 999999999999999999 5557888889999999999999999999999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
++|..+....++.|. |-..|.|+.|+|+ .+++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence 999999999999888 8999999999998 59999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 356 (442)
. |+.|.+||+.++..+.....+ ...+.++.|+.+|..|++++.|+.|++||+...
T Consensus 597 e-------d~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 E-------DGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred c-------CCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9 999999999999888776655 778999999999999999999999999988754
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=270.07 Aligned_cols=292 Identities=18% Similarity=0.235 Sum_probs=252.5
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
..++...+-|..+.|.+++|--...++||.++..+.+++|++.+. .+. .+.+|+..|.++....+|-+|++|+.|++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceE-EEeCchhheeeeeecccCcEEEEecCCce
Confidence 356667788999999999997544789999999999999988544 333 78899999999996667789999999999
Q ss_pred EEEEECCCCcE----EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-----EE----EeccCCCCEeE
Q 013475 214 SRLVDVEKGIE----TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-----AH----EYIQSLGPILD 279 (442)
Q Consensus 214 v~vwd~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~----~~~~~~~~i~~ 279 (442)
+++|.++++.. +.... |...|.+++++..+..+|++++.|+++++|++...+. .. +...|...|++
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 99998855432 22223 8999999999988889999999999999999976221 11 23468899999
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
++++|+.+.+++++. |++.+||++... .+......|...+.++.|++..+.+++++.|.+|+||.+.+..++
T Consensus 469 Vaia~ndkLiAT~Sq-------DktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQ-------DKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL 540 (775)
T ss_pred eEecCCCceEEeccc-------ccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence 999999999999998 999999999944 444556677889999999999999999999999999999987766
Q ss_pred ccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 360 DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
+++.+|. ..|..+.|-.+|+.|++++.||.|++|++++++|+.++..|.+.|++++.++.. .+++||+.||.|.
T Consensus 541 ---kT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~-~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 541 ---KTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL-DMFVTGGGDGRII 614 (775)
T ss_pred ---eeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc-ceeEecCCCeEEE
Confidence 6676665 668999999999999999999999999999999999999999999999999998 6999999999999
Q ss_pred EcC
Q 013475 440 VYE 442 (442)
Q Consensus 440 iwd 442 (442)
+|.
T Consensus 615 ~wk 617 (775)
T KOG0319|consen 615 FWK 617 (775)
T ss_pred Eee
Confidence 993
No 35
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=255.91 Aligned_cols=298 Identities=17% Similarity=0.257 Sum_probs=254.1
Q ss_pred cccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE
Q 013475 129 RRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 129 ~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 208 (442)
-...+|......+..|.+.|..+.|-++ ...|++|+.|..|++|++...+...+.++.+..+.|+.+.|.+++++++++
T Consensus 159 v~~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 159 VEDTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred hhcccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 3445677888899999999999999998 778999999999999999777667888899999999999999999999999
Q ss_pred ecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475 209 GYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
+.|+.+++|++...+...++. |...|+++.|.... ..+++|+.|.+|++||+.+..+.+++... ..+.+|..+ ..
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~ 313 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--IS 313 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccccc-ccccceEec--ce
Confidence 999999999999999999888 99999999999874 55999999999999999998777766433 456666665 56
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
.++++.. |+.|++||++........... +.++++..+.++..+++++.|.++.++|+++......+.....
T Consensus 314 ~~~SgH~-------DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 314 DVISGHF-------DKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred eeeeccc-------ccceEEEeccCCceeeEeecC--cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc
Confidence 6777777 999999999998776555443 4899999999999999999999999999998765543332221
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC--ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ--ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.. ..-.+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.| ..|++++.++.+.+|.
T Consensus 385 k~-asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 385 KC-ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLWT 459 (459)
T ss_pred cc-ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence 11 22367899999999999999999999999999999888875544 59999999999 7999999999999994
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-35 Score=259.49 Aligned_cols=285 Identities=18% Similarity=0.301 Sum_probs=255.2
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
.+++..|+..|.++.|+|. ..+++++-.+|.|.|||. .++..++.+.-..-+|.+..|-...+++++|+.|..|+||
T Consensus 6 krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWny--etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNY--ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEec--ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 3556679999999999999 889999999999999999 4458888888888999999999999999999999999999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEee-CCCEEEeccC
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTI-NGKQFVSSSD 294 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 294 (442)
+..+++.+..|+ |...|.+++.||. ..++++++.|-.|++||.+.+ .+.+++.+|..-|.+++|+| |.+.|++++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 999999999999 9999999999999 489999999999999999865 57789999999999999999 6688999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC--CeeEEEeCCCeEEEeeCCCCcccccceeEeeccccc
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD--PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSG 372 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
|++|++|.+....+..++. .|...+.|+.+.+.| .++++|+.|..+++||..+..++ .++.+|. .
T Consensus 162 -------DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---~TLeGHt--~ 228 (794)
T KOG0276|consen 162 -------DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---QTLEGHT--N 228 (794)
T ss_pred -------cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH---HHhhccc--c
Confidence 9999999999988777766 677789999998755 69999999999999999988776 5666666 4
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.|..+.|+|.-.+|++|++||+++||+..+.++..++.-.-+.|++++-.+.+ ..++.|.+.|.|.|
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~-~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD-GKIAVGFDEGSVTV 295 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC-CeEEEeccCCcEEE
Confidence 48899999999999999999999999999988888888778899999999987 57888888887654
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-35 Score=270.28 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=252.8
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
..|...+..|..++|+|. ..+++++-..|.|++||. .-..++..|..|.++|..++|+|++.+|++|+.|..|+||+
T Consensus 3 tkfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDY--RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDY--RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred chhhcccccccceecCCC-CCEEEEeecCceeeeehh--hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 345666788999999999 899999999999999999 44588889999999999999999999999999999999999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
..+.+++.++. |-..|..+.|++. ...|++++.|.+|+||+..+++++..+.+|...|.|.+|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc---
Confidence 99999999888 8999999999998 589999999999999999999999999999999999999999999999998
Q ss_pred CcCCCCeEEEEeCCCCc----------------------------ccceeeccccceeeeEEecCCCCeeEEEeCCCeEE
Q 013475 298 SNMSENSIVVWDVSREV----------------------------PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIA 349 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 349 (442)
|.+|++||+..-+ .++.+...|...+..++|+|.-..+++|+.|..|+
T Consensus 156 ----DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 156 ----DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred ----cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 9999999986411 12334456777899999999999999999999999
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
+|.++.... +.+.+..+|. ..|.++-|+|..++|++.++|++|+|||+...+.+++++...+..+.++-+|.. +++
T Consensus 232 lWrmnetKa-WEvDtcrgH~--nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NLf 307 (1202)
T KOG0292|consen 232 LWRMNETKA-WEVDTCRGHY--NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NLF 307 (1202)
T ss_pred EEEeccccc-eeehhhhccc--CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-cee
Confidence 999987543 3335555554 668999999999999999999999999999999999998888999999999998 688
Q ss_pred EEeeCCCcEEEc
Q 013475 430 GSCSWNGDVSVY 441 (442)
Q Consensus 430 ~s~~~dg~i~iw 441 (442)
+.|-+.| +.||
T Consensus 308 AAgHDsG-m~VF 318 (1202)
T KOG0292|consen 308 AAGHDSG-MIVF 318 (1202)
T ss_pred eeecCCc-eEEE
Confidence 7775444 4443
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=250.91 Aligned_cols=267 Identities=20% Similarity=0.298 Sum_probs=225.6
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
....|+|+.+..+ .+++|..|++|+|||. ....+...+.||++.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~--n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDK--NSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEecc--ccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 4578999999744 6899999999999998 445888899999999999999 56699999999999999999999
Q ss_pred EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc---eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 224 ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK---VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
++.++- |...|..+.|+. .++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+ .+++++++.
T Consensus 269 ~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg----- 338 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG----- 338 (499)
T ss_pred hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC-----
Confidence 998876 788999999973 689999999999999998654 335678999999999995 669999998
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
|.+|++|++.+.+.+..+. .|...|.|+.+ .++++++|+.|++|++||...+..+. .+++|. .-|.++.|
T Consensus 339 --DRTikvW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHE--eLvRciRF 408 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGHE--ELVRCIRF 408 (499)
T ss_pred --CceEEEEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---HHhchH--Hhhhheee
Confidence 9999999999988775544 44445666554 57899999999999999999998774 444444 56788888
Q ss_pred ccCCCEEEEecCCCcEEEEecCCce---------eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 380 SLDGEKLVSGSSDGSIYFYNCRSSE---------LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 380 s~~g~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.+.|++|..||+|+|||+..+. ++..+..|.+.|..+.|.. ..+++++.|.+|.|||
T Consensus 409 --d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 409 --DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWD 475 (499)
T ss_pred --cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEE
Confidence 56789999999999999998753 4556667899999999975 4788899999999997
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.1e-35 Score=243.68 Aligned_cols=287 Identities=17% Similarity=0.255 Sum_probs=240.2
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC---CEEEEEec
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG---LFVLSCGY 210 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~ 210 (442)
+.+....+. |.+.|.++... ++.+++|++||.++|||. .++....+.+|.++|.+++|.-.+ ..|++++.
T Consensus 95 aP~pl~~~~-hdDWVSsv~~~---~~~IltgsYDg~~riWd~---~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 95 APKPLQCFL-HDDWVSSVKGA---SKWILTGSYDGTSRIWDL---KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCcccccc-chhhhhhhccc---CceEEEeecCCeeEEEec---CCceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 334444443 88999999888 458999999999999995 468888999999999999986533 35999999
Q ss_pred CCcEEEEECCCCcEEEee-----eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-----------------------
Q 013475 211 DCSSRLVDVEKGIETQSF-----REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR----------------------- 262 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----------------------- 262 (442)
|.++++|.++.++..... .|...|.++...++| ..+++|+.|.+|.||+..
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999999887543222 389999999999996 899999999999999932
Q ss_pred --CCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE
Q 013475 263 --TGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 263 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (442)
++.++..+.+|..+|.++.|++ ...+++++. |.+|+.||+.++.....+.. .....++..++...+|+
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~Sw-------DHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSW-------DHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLA 316 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecc-------cceEEEEEeecccceeeeec--CcceeEeecccccceee
Confidence 1234567789999999999997 677888887 99999999999887766543 34688999999999999
Q ss_pred EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC-CCEEEEecCCCcEEEEecCCce-eeEeeeccCCceeE
Q 013475 341 AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCRSSE-LERKIKAYEQACID 418 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 418 (442)
+|+.|..+++||.+.+........+.+|. ..|..+.|+|. ...|++|+.||++++||+++.+ .+..+.+|.+.|.+
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~--nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHK--NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecch--hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence 99999999999999876554445555554 68999999994 5677899999999999999877 89999999999999
Q ss_pred EEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 419 VAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 419 ~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|+..+ ++++||.|++|+|+.
T Consensus 395 vdW~~~~--~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 395 VDWNEGG--LIVSGGADNKLRIFK 416 (423)
T ss_pred EeccCCc--eEEeccCcceEEEec
Confidence 9999875 899999999999973
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=263.56 Aligned_cols=291 Identities=17% Similarity=0.274 Sum_probs=233.1
Q ss_pred Ccceecccc-cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC--CEEEEEecC
Q 013475 135 GRLSTALCH-HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG--LFVLSCGYD 211 (442)
Q Consensus 135 ~~~~~~l~~-h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~d 211 (442)
+++++.+++ |+++|.-++|+|. +.+|++|+.||.|+|||+ ....+...|++|.+.|.++.|+|+- ..|++|..|
T Consensus 94 gk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi--~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 94 GKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDI--KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred chHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEe--eCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 578888888 9999999999999 799999999999999999 5568999999999999999999964 458899999
Q ss_pred CcEEEEECCCCcE-EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC--------------------------
Q 013475 212 CSSRLVDVEKGIE-TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-------------------------- 263 (442)
Q Consensus 212 ~~v~vwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------- 263 (442)
+.+++||+.+... +..+. |.+.|+++.|.+++ ..+++++.|..+.+||+.+
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~ 249 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK 249 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence 9999999996544 55554 88889999998884 6667777777777777611
Q ss_pred --------------------Cce---------------------------------------------------------
Q 013475 264 --------------------GKV--------------------------------------------------------- 266 (442)
Q Consensus 264 --------------------~~~--------------------------------------------------------- 266 (442)
+++
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 000
Q ss_pred ----------------------------EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC-----
Q 013475 267 ----------------------------AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE----- 313 (442)
Q Consensus 267 ----------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~----- 313 (442)
...+.+|...|.++....+|.+|++++. |+++++|.++++
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sK-------D~svilWr~~~~~~~~~ 402 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSK-------DKSVILWRLNNNCSKSL 402 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecC-------CceEEEEEecCCcchhh
Confidence 0012345555666664456667777776 666666655221
Q ss_pred ------------------------------------------cc----c----ceeeccccceeeeEEecCCCCeeEEEe
Q 013475 314 ------------------------------------------VP----L----SKQVYVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 314 ------------------------------------------~~----~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
+. + ......|...|.+++++|+.+.+++|+
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 00 0 011234566799999999999999999
Q ss_pred CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 344 NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 344 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
.|++.++|++..... ...+.+|. ..+.++.|++..+.+++++.|++|+||.+.++.++++|.+|...|..+.|-.
T Consensus 483 qDktaKiW~le~~~l---~~vLsGH~--RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRL---LGVLSGHT--RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred cccceeeecccCceE---EEEeeCCc--cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 999999999994433 35566655 6699999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEcC
Q 013475 424 ILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iwd 442 (442)
++ ..|+|++.||.|+|||
T Consensus 558 ~~-~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 558 NG-KQLISAGADGLIKLWN 575 (775)
T ss_pred CC-cEEEeccCCCcEEEEe
Confidence 98 7999999999999997
No 41
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-34 Score=231.80 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=238.2
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec--CCcE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY--DCSS 214 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~v 214 (442)
..+.|....+.|+++.|+++ |.+|++++.|.+++|||.. +.+...++..+...|..++|....+.++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~--~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSL--SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcC--CCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 34455667889999999999 9999999999999999994 45788888878889999999887777777776 8999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+..++.+.+.++.|. |...|+.++.+|-+ ..|++++.|++|++||++..++...+.....+| ++|.|+|-+++++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALAN 159 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEec
Confidence 999999999999999 99999999999986 899999999999999999877766665544444 78999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCC--cccceeec--cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 294 DVSGSNMSENSIVVWDVSRE--VPLSKQVY--VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
. .+.|++||++.- .+...+.. ........+.|+|+|++++.++..+.+++.|.-.+... ..+..+.
T Consensus 160 ~-------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~---~tfs~~~ 229 (311)
T KOG1446|consen 160 G-------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK---STFSGYP 229 (311)
T ss_pred C-------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe---eeEeecc
Confidence 7 669999999974 22222222 33567889999999999999999999999999888755 3344333
Q ss_pred ccc-CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec-cCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 370 VSG-FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA-YEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 370 ~~~-~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
... .....+|+||++++++|+.||+|.+|++++++.+..+.+ +.+.+.++.|+|.. .+++|+ +..+.+|
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFW 300 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-eeeeec--CceEEEE
Confidence 322 235789999999999999999999999999999999998 68899999999987 566665 4556666
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=253.76 Aligned_cols=247 Identities=21% Similarity=0.364 Sum_probs=214.7
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
...+++|.+.|.++.|+.+ +.++++|+.+|.|++|+. +...++.+..|. ..|++++|+|+...|++|+.||+|+|
T Consensus 131 EtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqp---nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki 206 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQP---NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI 206 (464)
T ss_pred HHHhhhhcccceeEEEccC-CCEEEEcCCCceEEeccc---chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence 3456899999999999999 999999999999999996 344455555555 99999999999999999999999999
Q ss_pred EECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 217 VDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 217 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
||....+....+. |.-.|.++.|+|. ..+|++|+.|..|++||.+++.++.++..|...|..+.|++++++|++++.
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk- 284 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK- 284 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC-
Confidence 9999888877777 8889999999998 589999999999999999999999999999999999999999999999998
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
|..++++|+++.+.+... ..|...+.++.|+|-.. +|.+|+.|+.|..|.+.....+.. ....|...|
T Consensus 285 ------D~~~kv~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~----i~~AHd~~i 353 (464)
T KOG0284|consen 285 ------DQSCKVFDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE----IPPAHDGEI 353 (464)
T ss_pred ------CceEEEEehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEEeccccccccC----CCcccccce
Confidence 999999999976655443 34566899999999665 666799999999999884443322 234566789
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
++++|+|-|.+|++|+.|.++++|.-.
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999999999999999753
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=269.59 Aligned_cols=251 Identities=27% Similarity=0.365 Sum_probs=210.6
Q ss_pred eeccc-ccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc--------------------------------C------
Q 013475 138 STALC-HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--------------------------------R------ 178 (442)
Q Consensus 138 ~~~l~-~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------ 178 (442)
.+.+. +|.+.|+++.||+| |+|||+|+.|+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 34556 89999999999999 99999999999999999854 0
Q ss_pred --------------------CcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEE
Q 013475 179 --------------------DQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVK 238 (442)
Q Consensus 179 --------------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~ 238 (442)
..+++..+.||.+.|.+|.|+.+ ++|++++.|.+|++|++...+|++.|.|...|+|++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 01234566789999999999976 489999999999999999999999999999999999
Q ss_pred EccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce
Q 013475 239 FHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK 318 (442)
Q Consensus 239 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 318 (442)
|+|.+.++|++|+-||.|+||++...+.+.-... ..-|++++|.|||++.++|+. +|.+++|+....+....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~-------~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTF-------NGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEe-------ccEEEEEEccCCeEEEe
Confidence 9999899999999999999999987666544443 488999999999999999999 99999999987664433
Q ss_pred eecc-------ccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec
Q 013475 319 QVYV-------EAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 319 ~~~~-------~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
.... ....|+.+.+.|... .+++.+.|..|+|||.+....+.+++.+ .....-....|+.||++|++++
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~---~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF---RNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc---ccCCcceeeeEccCCCEEEEee
Confidence 2221 123799999998655 5999999999999999877666555443 3334456789999999999999
Q ss_pred CCCcEEEEecC
Q 013475 391 SDGSIYFYNCR 401 (442)
Q Consensus 391 ~dg~i~iwd~~ 401 (442)
+|..|+||++.
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999974
No 44
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-35 Score=236.14 Aligned_cols=294 Identities=19% Similarity=0.299 Sum_probs=247.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc----------------CCcceeeeeccCCCceeEEEe
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS----------------RDQKLARVLNFHSAAVNDVKW 198 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~h~~~v~~l~~ 198 (442)
.-....+..|++.+.+.+|++| |.++|+|+.|-.|+|.|++. .....++++-.|...|+++.|
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ccceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3445677899999999999999 99999999999999999851 012456777789999999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcEE---EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---cc
Q 013475 199 SQQGLFVLSCGYDCSSRLVDVEKGIET---QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQ 272 (442)
Q Consensus 199 ~~~~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~ 272 (442)
+|....|++++.|++|+++|+...... +.|+....|.++.|+|.| .+|++|.....+++||+++.++...- ..
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 999999999999999999999875444 344477889999999997 88999999999999999998765433 46
Q ss_pred CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-cceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 273 SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-AYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
|.+.|+++.+++.|++.++++. ||.|++||--.++++.++...| ...+.+..|..+++++++.+.|..+++|
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSk-------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASK-------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred cccceeEEEecCCccEEEEecc-------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 8889999999999999999998 9999999999999998887766 4578899999999999999999999999
Q ss_pred eCCCCcccccceeEeecccc---cCcEEEEEccCCCEEEEecC-CCcEEEEecCCceeeEeee-ccCCceeEEEEcCCCC
Q 013475 352 SSTPPFRLDKFKRYESHGVS---GFPIKCSFSLDGEKLVSGSS-DGSIYFYNCRSSELERKIK-AYEQACIDVAFHPILP 426 (442)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 426 (442)
.+.++..+ ..+.+.+.. ..-+...|+....|++.-.+ .+.+.-||.+++..+..+. +|.+.+..+.-+|.+
T Consensus 333 Ei~t~R~l---~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~- 408 (430)
T KOG0640|consen 333 EISTGRML---KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE- 408 (430)
T ss_pred eecCCceE---EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC-
Confidence 99998776 444443221 22345678888888887664 5679999999887665543 799999999999999
Q ss_pred CEEEEeeCCCcEEEc
Q 013475 427 NIIGSCSWNGDVSVY 441 (442)
Q Consensus 427 ~~l~s~~~dg~i~iw 441 (442)
-.+++|+.|-.+|+|
T Consensus 409 p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFW 423 (430)
T ss_pred Cceeeecccceeeee
Confidence 499999999999999
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-34 Score=245.93 Aligned_cols=295 Identities=14% Similarity=0.258 Sum_probs=253.5
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec--CC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY--DC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~ 212 (442)
......+.+|...++-..|||. |.|+|+|...|+|||||....+..+...++.-.++|..|+|+.+++.|++.++ +.
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred ccceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3446678899999999999999 99999999999999999977666777788888899999999999999998875 33
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
..+++-.++|..+-.+. |...|+++.|-|.-...+++|++|+.|-+|+-.-.+...++..|...|+++.|+|||.+|++
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 34444445666777777 88899999999998899999999999999997777777888899999999999999999999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceee--ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQV--YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
.+. ||.|.+||-.+++.+..+. ..|.+.|..++|+||+..+++++.|.+++|||.........+.. +..
T Consensus 208 ~gs-------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~--~~~ 278 (603)
T KOG0318|consen 208 AGS-------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM--GST 278 (603)
T ss_pred ecC-------CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec--CCc
Confidence 998 9999999999998877665 36778999999999999999999999999999998755533221 111
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.......+.|- ...|++.+.+|.|.+++......+..+.+|...|+++..++++ .+|.+|+.||.|.-||
T Consensus 279 v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 279 VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWD 348 (603)
T ss_pred hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEe
Confidence 22334566675 5689999999999999999999999999999999999999999 8999999999999996
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=258.62 Aligned_cols=290 Identities=18% Similarity=0.274 Sum_probs=231.1
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
.....+|.||+..|+++.|... |..|++|+.|+.|.|||+-. ..-...+.+|...|+.+-|..+.+++++++.|+.|
T Consensus 97 ~~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDlV~--E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~i 173 (888)
T KOG0306|consen 97 EEILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDLVG--EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMI 173 (888)
T ss_pred CceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEecc--ceeeEEeecchHHHhHHhccCCCeEEEEeccCceE
Confidence 4677889999999999999999 89999999999999999944 46677889999999999999988999999999999
Q ss_pred EEEECCCCcEEEeee-C---------------------------------------------------------------
Q 013475 215 RLVDVEKGIETQSFR-E--------------------------------------------------------------- 230 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~--------------------------------------------------------------- 230 (442)
++||+++..|..+.- |
T Consensus 174 K~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 174 KFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 999996654332221 2
Q ss_pred --------------------------------------------------------------------------------
Q 013475 231 -------------------------------------------------------------------------------- 230 (442)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (442)
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence
Q ss_pred ---------------------------------------CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE---
Q 013475 231 ---------------------------------------ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH--- 268 (442)
Q Consensus 231 ---------------------------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--- 268 (442)
...|..++++.+. .++++ +..+.|++|+..+.++++
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~S-ga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLAS-GAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeee-cCCCcEEEEEccCcceeEEec
Confidence 2233444444431 22222 223456666665444433
Q ss_pred -------------------------------------EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 269 -------------------------------------EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 269 -------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
++..|.+.|.+++.+||++.+++++. |.+|++||+.
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-------DktVkfWdf~ 484 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA-------DKTVKFWDFK 484 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC-------CcEEEEEeEE
Confidence 34568889999999999999999998 9999999975
Q ss_pred CCcc-----------cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 312 REVP-----------LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 312 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
-... ..+....-...+.|+.++|++++++++--|+++++|-+++..-. -.+ .+|.-+|.++.+|
T Consensus 485 l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf---lsL--YGHkLPV~smDIS 559 (888)
T KOG0306|consen 485 LVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF---LSL--YGHKLPVLSMDIS 559 (888)
T ss_pred EEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee---eee--cccccceeEEecc
Confidence 3111 11122233457999999999999999999999999999875332 233 3555779999999
Q ss_pred cCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 381 LDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
||++++++|+.|..|+||-++-|.|-+.+-+|.+.|.++.|.|.. .++++||.|+.|+-||
T Consensus 560 ~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWD 620 (888)
T ss_pred CCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeec
Confidence 999999999999999999999999999999999999999999987 8999999999999997
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=263.78 Aligned_cols=251 Identities=23% Similarity=0.359 Sum_probs=220.6
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
+.+.+.+|...|++++|+|+ ++++++++.|++|+|||+ ......++++.+|...|++++|+|+++++++|+.|++|+|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~-~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDL-KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRI 272 (456)
T ss_pred hhccccccccceeeeEECCC-CcEEEEecCCceEEEeec-cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEE
Confidence 67777999999999999999 999999999999999999 3335788999999999999999999999999999999999
Q ss_pred EECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc--eEEEeccCCCC--EeEEEEeeCCCEEEe
Q 013475 217 VDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGP--ILDVEFTINGKQFVS 291 (442)
Q Consensus 217 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~ 291 (442)
||+++++++..+. |...|++++|++++ ++|++++.|+.|++||+.++. ++..+..+... ++++.|+|+++++++
T Consensus 273 Wd~~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 273 WDVRTGECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred EeccCCeEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 9999999999999 89999999999996 899999999999999999998 56777766555 999999999999999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccc--eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAY--TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+.. |+.+++||+............... .+.+...++.+.++++++.|+.|++|+..+.... ..+.+|.
T Consensus 352 ~~~-------d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~---~~l~~h~ 421 (456)
T KOG0266|consen 352 ASL-------DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL---QRLEGHS 421 (456)
T ss_pred ecC-------CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh---hhhcCCC
Confidence 998 999999999988877766655553 4455666889999999999999999999986554 4444453
Q ss_pred cccCcEEEEEccCCCEEEEec--CCCcEEEEecC
Q 013475 370 VSGFPIKCSFSLDGEKLVSGS--SDGSIYFYNCR 401 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~--~dg~i~iwd~~ 401 (442)
...+..+.+++..+++++++ .|+.+++|..+
T Consensus 422 -~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 -KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 56688999999999999998 78999999754
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=240.41 Aligned_cols=253 Identities=21% Similarity=0.332 Sum_probs=227.8
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
...+++...|+||++.|.+++|+.. |++|++++.|-.+++||+.+. ..+++.+.+|...|.++.|-|.|.++++++.|
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 4567889999999999999999999 999999999999999999654 67788888999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC-----
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN----- 285 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----- 285 (442)
.+|+.|++.++.++++|. |..-|..++.+.|| .++++++.|.+|++|-+.++++...+..|..+|.+++|-|.
T Consensus 215 ~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~ 293 (406)
T KOG0295|consen 215 NTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS 293 (406)
T ss_pred cceeEEecccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc
Confidence 999999999999999999 88899999999996 99999999999999999999888999999999999999763
Q ss_pred ----------CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 286 ----------GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 286 ----------~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
+.++.+++. |++|++||+.++.++.++. .+...|..++|+|.|+||+++..|+++++||+.+
T Consensus 294 i~~at~~~~~~~~l~s~Sr-------DktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSR-------DKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred hhhccCCCCCccEEEeecc-------cceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 247777777 9999999999998876654 5666999999999999999999999999999999
Q ss_pred CcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 356 PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
..++.. +. .+...++++.|+.+-.|+++|+-|.++++|..
T Consensus 366 ~~cmk~---~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQCMKT---LE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeec---cC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 877643 33 34466899999999999999999999999974
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=6.5e-34 Score=245.98 Aligned_cols=299 Identities=20% Similarity=0.318 Sum_probs=237.1
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc---eeeeeccCCCceeEEEeCCCCCEEEEE
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK---LARVLNFHSAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~ 208 (442)
.+|......|++|+..|.++++.|. |-.|++|+.|.+|++||+..-... ...........|+++.|++.+..|++.
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 4677888899999999999999999 889999999999999998543221 222233456789999999999999999
Q ss_pred ecCCcEEEEECCCCcEEEee-------------eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-eEEEec---
Q 013475 209 GYDCSSRLVDVEKGIETQSF-------------REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-VAHEYI--- 271 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--- 271 (442)
+.....+|+|-+..+..... .|...++|.+|+|+....|++++.||++++||+++.+ .+..++
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 98999999996654333222 2667899999999999999999999999999998654 223332
Q ss_pred --cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc--ccceeecccc--ceeeeEEecCCCCeeEEEeCC
Q 013475 272 --QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV--PLSKQVYVEA--YTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 272 --~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 345 (442)
+..-+++.++|+++|++|+++.. ||.|.+|+..... ....+...|. ..|+|+.|+++|++|++-+.|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~-------DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCL-------DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred CCCcccCceeeecCCCcchhhhccc-------CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 22347899999999999999998 9999999986533 2223333343 489999999999999999999
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC------CCcEEEEecCCceeeEeeeccCCceeEE
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS------DGSIYFYNCRSSELERKIKAYEQACIDV 419 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 419 (442)
+.+++||++...... ....+......-+.++|||+.++|++|.. .|.+++||..+.+.++++.-....|..+
T Consensus 386 ~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred Cceeeeeccccccch--hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 999999999765442 22222222334568999999999999864 5789999999999999988778889999
Q ss_pred EEcCCCCCEEEEeeCCCcEEEc
Q 013475 420 AFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.|+|.- +.|+.++.||.++||
T Consensus 464 ~WhpkL-NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 464 LWHPKL-NQIFAGSGDGTAHVY 484 (641)
T ss_pred eecchh-hheeeecCCCceEEE
Confidence 999998 567777779999986
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=238.95 Aligned_cols=246 Identities=16% Similarity=0.209 Sum_probs=225.0
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRL 258 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 258 (442)
.++...+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.+++...++. |...|..+++++.. .++++++.|+.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKC 219 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKC 219 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEE
Confidence 46677889999999999999999999999999999999999999999988 89999999999985 89999999999999
Q ss_pred EECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCe
Q 013475 259 WDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (442)
||++..+.++.+.+|-+.|.+++.+|.-+.|++++. |.++++||+++...+..+ ..|...+..+.+.|.+..
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr-------Dst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR-------DSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCC-------cceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc
Confidence 999999999999999999999999999999999998 999999999998766544 457779999999999999
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeE
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACID 418 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 418 (442)
+++|+.|++|++||+..+... ..+. .+...+.+++.+|....+++++.|. |+-|++..|+.++.+.+|...|++
T Consensus 292 vit~S~D~tvrlWDl~agkt~---~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTM---ITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred eEEecCCceEEEeeeccCcee---Eeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeee
Confidence 999999999999999988655 2232 3446688999999999999999886 999999999999999999999999
Q ss_pred EEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 419 VAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 419 ~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++.+.|+ ++++|+++|.|.+||
T Consensus 366 l~~nsD~--v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 366 LSVNSDG--VLVSGGDNGSIMFWD 387 (460)
T ss_pred eeeccCc--eEEEcCCceEEEEEe
Confidence 9999997 999999999999997
No 51
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=242.89 Aligned_cols=286 Identities=19% Similarity=0.260 Sum_probs=239.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
...+..|.||.+.|.|++=+|..-..+++|+.||.|+|||+ .+..+..++..|.+.|..|++.. ..+++++.|.+|
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl--sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL--SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEeh--hhhhhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 45677889999999999999984478999999999999999 44588899999999999999976 679999999999
Q ss_pred EEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE-EEecc
Q 013475 215 RLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ-FVSSS 293 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~ 293 (442)
+.|.++. ....++..+..+..+.-+..+ +.++++|. .|.|||.+-..++..+.-....|.++.|+|.... |+++.
T Consensus 132 K~wk~~~-~p~~tilg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTILGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eeeeccC-Ccceeeecccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 9999876 477777788888888877764 88899887 4999999988899999888889999999997654 55555
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
. |+.|.+||++...++....... ....++|+|..-.|+++++|..++.||++...... ..+.+ |...
T Consensus 208 s-------DrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~--~v~~d--hvsA 274 (433)
T KOG0268|consen 208 S-------DRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL--NVHKD--HVSA 274 (433)
T ss_pred c-------CCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccc--hhhcc--ccee
Confidence 5 9999999999999887766544 46779999988889999999999999998754432 33333 3467
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec-cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA-YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.++.|||.|+-|++|+.|.+|+||..+.+..-..+.. -...|.++.|+-|. +++++||+|+.|++|-
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWK 343 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-cEEEecCCCcceeeee
Confidence 89999999999999999999999999987654333321 13579999999998 8999999999999993
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=222.93 Aligned_cols=250 Identities=19% Similarity=0.320 Sum_probs=209.7
Q ss_pred cceecc-cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 136 RLSTAL-CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 136 ~~~~~l-~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
.+...| .+|+..|.+++|+|. |++|++|+.|.++.||.-..++.+++.++.||...|.|++|+.+|++|++|+.|..|
T Consensus 51 ~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 51 TCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred EEEEeccccchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 344444 479999999999999 999999999999999998888889999999999999999999999999999999999
Q ss_pred EEEECCCC---cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC---CceEEEeccCCCCEeEEEEeeCCC
Q 013475 215 RLVDVEKG---IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT---GKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 215 ~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
.||.+..+ ++...++ |...|..+.|+|. ..+|++++.|.+|++|+-.. -.+++++.+|.+.|.+++|++.|.
T Consensus 130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred EEEEecCCCcEEEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 99999855 4555666 8999999999998 48999999999999998762 357899999999999999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc--cceeE
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD--KFKRY 365 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~~~ 365 (442)
.|++++. |++++||.... .+...+...+..+.|. ...|++++.|+.|++|......... .+...
T Consensus 209 rl~s~sd-------D~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 209 RLVSCSD-------DGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred eEEEecC-------CcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 9999999 99999999763 2333455567778888 6789999999999999876432111 11111
Q ss_pred eecccccCcEEEEEccC-CCEEEEecCCCcEEEEecC
Q 013475 366 ESHGVSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~ 401 (442)
..+.|...|++++|.|. .+.|++|+.||.|++|.+.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 23345567999999994 7899999999999999874
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-34 Score=227.78 Aligned_cols=244 Identities=20% Similarity=0.310 Sum_probs=209.0
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCC
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
-++.+..++|+++..+.+++++.||+++|||+. ....++..++.|...|.++.|++ +...+++++.|++|++|+....
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 467899999999988999999999999999963 34678889999999999999999 6677888899999999999999
Q ss_pred cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcC
Q 013475 223 IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNM 300 (442)
Q Consensus 223 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~ 300 (442)
+.+++|. |...|....|+|...++|++++.|+++++||++.......+..|...|.++.|+. +...+++++.
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v------ 211 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV------ 211 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC------
Confidence 9999998 8899999999999899999999999999999987544445888989999999998 5566778887
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
|+.|++||+++-+... ..+. .|.-.|..+.||
T Consensus 212 -d~~vr~wDir~~r~pl---------------------------------------------~eL~--gh~~AVRkvk~S 243 (311)
T KOG0277|consen 212 -DNLVRGWDIRNLRTPL---------------------------------------------FELN--GHGLAVRKVKFS 243 (311)
T ss_pred -CceEEEEehhhccccc---------------------------------------------eeec--CCceEEEEEecC
Confidence 9999999999754211 1122 233457788898
Q ss_pred cC-CCEEEEecCCCcEEEEecCCc-eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 381 LD-GEKLVSGSSDGSIYFYNCRSS-ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 381 ~~-g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|. ...|++++.|-+++|||...+ .++.+...|...|.++.|++..+.++|+++.|+.++|||
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 84 478999999999999998854 456677789999999999998888999999999999997
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=220.18 Aligned_cols=244 Identities=21% Similarity=0.296 Sum_probs=210.2
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
+....+..|.++|..+.|+-+|+|.++|+.|.+|++|+...+.+++++. |...|..++.+.|+ ..|++|+.|..|.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEE
Confidence 3456778899999999999999999999999999999999999999999 89999999999986 788999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee-ccccceeeeEEecCCCCe
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV-YVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 338 (442)
|+++|+.++.+.+|.+.|+.+.|+.+...+++++. |..+++||.+.......+. ......+.++.. .+..
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~he 157 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHE 157 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccc-------cceeEEEEcccCCCCccchhhhhcCceeEEEe--cccE
Confidence 99999999999999999999999999999999998 9999999998754332222 222335555554 3668
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCce--
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQAC-- 416 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 416 (442)
+++|+.||+++.||++.+..... + ....|+++.|+++|+..++++-|++|++.|-.+|++++.+++|...-
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sD---y----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSD---Y----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred EEeeccCCcEEEEEeecceeehh---h----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 99999999999999998755422 2 22458999999999999999999999999999999999999997644
Q ss_pred eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 417 IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 417 ~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
..++++... ..+++|++||.|++||
T Consensus 231 ldc~l~qsd-thV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 231 LDCCLNQSD-THVFSGSEDGKVYFWD 255 (307)
T ss_pred eeeeecccc-eeEEeccCCceEEEEE
Confidence 345666665 6999999999999997
No 55
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=222.32 Aligned_cols=278 Identities=20% Similarity=0.272 Sum_probs=226.2
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
.-.+.|.+|+|||....+++.|+.||+||+|+++......-+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 34678999999996577888999999999999976433333555669999999999999999999999999999999999
Q ss_pred cEEEeeeCCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCC
Q 013475 223 IETQSFREELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 301 (442)
+..+.-.|..+|..+.|-+.. ...|++|+.|.+|++||++...++.++... +.+.++.. ...+++.+..
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata------- 174 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATA------- 174 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEec-------
Confidence 887777799999999998753 248899999999999999999888887654 55666554 3456666666
Q ss_pred CCeEEEEeCCCCc-ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc-------ccC
Q 013475 302 ENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV-------SGF 373 (442)
Q Consensus 302 d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-------~~~ 373 (442)
++.|.+|+++++. ............+.|++...+....+.|+-.|.+.+..++....... -.++-|.. -..
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n-FtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN-FTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc-eeEEEeccCCCCCCceEE
Confidence 8999999997754 34444555677899999999999999999999999999887643221 23333332 124
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
|.+++|+|....|++.+.||++.+||-+....+.+.+.|..+|++..|+.+| .+++-+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G-~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG-SIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC-CEEEEE
Confidence 6789999999999999999999999988888888888999999999999999 566544
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=249.77 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=245.6
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
..+.||+..|.+++||.+ ...+++|+ .+.|+||+.. ..++++++. .+.+.+..|.|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~--t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRD--TLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEcc--CcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 467899999999999999 77777776 5799999984 458888887 34899999999999999999999999999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-----CceEEEe-------ccCCCCEeEEEEeeC
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-----GKVAHEY-------IQSLGPILDVEFTIN 285 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~-------~~~~~~i~~~~~~~~ 285 (442)
+.+...+.+++ |.+.++.++.+||+ ..+++|+.|.+|++||+.- +...+.+ -.-...|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 99998888888 99999999999996 8899999999999999752 1111111 123468999999999
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
|++|+.+-- |+++++|-+.+-+ .....+.|..++.|+..+|+++.+++|+.|+.|++|-++=+.+- +.+
T Consensus 520 gk~LaVsLL-------dnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~ 588 (888)
T KOG0306|consen 520 GKLLAVSLL-------DNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSF 588 (888)
T ss_pred CcEEEEEec-------cCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhh
Confidence 999999998 9999999998764 33456788899999999999999999999999999998876554 223
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|...|.++.|-|+..++.+++.|+.|+-||-...++++.+.+|...|++++.+|+| .+++++|.|.+|++|+
T Consensus 589 --fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 589 --FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWE 662 (888)
T ss_pred --hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeee
Confidence 3455779999999999999999999999999999999999999999999999999999 7999999999999995
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=247.92 Aligned_cols=245 Identities=21% Similarity=0.282 Sum_probs=225.4
Q ss_pred eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC
Q 013475 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR 262 (442)
Q Consensus 184 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (442)
+.+..++..|.++.|+|...+++++-.+|.|.|||.++...++.|. ...+|.+..|... .+.+++|+.|..|++|+.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec-cceEEEecCCceEEEEecc
Confidence 3455589999999999999999999999999999999999999999 7889999999987 5999999999999999999
Q ss_pred CCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC-CCeeEE
Q 013475 263 TGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF-DPYFVA 341 (442)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 341 (442)
+++.++.|..|..-|++++.+|..-+++++++ |-.|++||.+..-...+....|.+-+++++|.|. .+.+++
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD-------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD-------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCC-------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 99999999999999999999999999999999 9999999999988888888899999999999995 468999
Q ss_pred EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC--CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEE
Q 013475 342 QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG--EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDV 419 (442)
Q Consensus 342 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 419 (442)
++-|++|++|.+...... .++.+|. ..|.++.|-+.| .||++|+.|.+|+|||+++..|++++.+|...|..+
T Consensus 159 ~sLDrTVKVWslgs~~~n---fTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPN---FTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred eeccccEEEEEcCCCCCc---eeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 999999999999887655 4455544 668899998744 699999999999999999999999999999999999
Q ss_pred EEcCCCCCEEEEeeCCCcEEEcC
Q 013475 420 AFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|+|.- -+++||+.||++|||+
T Consensus 234 ~fhp~l-piiisgsEDGTvriWh 255 (794)
T KOG0276|consen 234 FFHPEL-PIIISGSEDGTVRIWN 255 (794)
T ss_pred EecCCC-cEEEEecCCccEEEec
Confidence 999999 4999999999999996
No 58
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.4e-31 Score=245.55 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=208.4
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--------c---eeeeeccCCCceeEEEeCC-CCCEEEEEecC
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--------K---LARVLNFHSAAVNDVKWSQ-QGLFVLSCGYD 211 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--------~---~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d 211 (442)
|-..|.....+++ +..+++++.+.....|+...+.. + ....+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 19 ~~~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 3455666667777 55567777777777777532210 1 0124678999999999999 88999999999
Q ss_pred CcEEEEECCCCc-------EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 212 CSSRLVDVEKGI-------ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 212 ~~v~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
++|++||+.++. .+..+. |...|.+++|+|++.++|++++.|+.|+|||+++++.+..+..|...|.+++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence 999999997652 344555 889999999999866899999999999999999999999999999999999999
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe----CCCeEEEeeCCCCccc
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS----NGNYIAIFSSTPPFRL 359 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~i~i~~~~~~~~~ 359 (442)
++|.+|++++. |+.|++||+++++.+.....+.......+.|.+++..+++++ .++.|++||++.....
T Consensus 178 pdG~lLatgs~-------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 178 LDGSLLCTTSK-------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred CCCCEEEEecC-------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99999999998 999999999998876655444444455678888888777643 4789999999865432
Q ss_pred ccceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEEEecCCceeeEeeec-cCCceeEEEEcCCC
Q 013475 360 DKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNCRSSELERKIKA-YEQACIDVAFHPIL 425 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~ 425 (442)
. .... ......+....|++++++|++++ .||.|++||+.+++++..+.. +...+.+++|.|..
T Consensus 251 ~--~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 251 Y--STVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred e--eEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 1 1111 12223355667899999999887 599999999999887766543 34567888888863
No 59
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-32 Score=232.69 Aligned_cols=280 Identities=13% Similarity=0.222 Sum_probs=239.0
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-ceeeeec--cCCCceeEEEeCCCCCEEEEEecCCcEEEEEC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-KLARVLN--FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~ 219 (442)
.|..-|.++.+|.. .+.++||+. |.|+|||+..... ..+..+. ...+.|.++.+.+||+.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 58889999999988 889999985 8999999954322 2333332 24678999999999999999999999999999
Q ss_pred CCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 220 EKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 220 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
.......+.+ ..-.+.+++.+|| .++.+++..||.|.|||+.+...++.|++|...+.||.+++||..|.+|+.
T Consensus 495 AapTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-- 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-- 571 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC--
Confidence 8765544444 2345778999999 599999999999999999999999999999999999999999999999998
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
|++|+.||++++..+.+.. ....|.++..+|.+.++++|..++.+.+...... .++..|.+..-|.+
T Consensus 572 -----DntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~skp------~kyqlhlheScVLS 638 (705)
T KOG0639|consen 572 -----DNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP------EKYQLHLHESCVLS 638 (705)
T ss_pred -----ccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCCc------cceeecccccEEEE
Confidence 9999999999987665433 3457899999999999999999999999888765 45566677788999
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|.+.|+++++.+.|+.+..|...-|..+...+. ...|.++.++-|. ++++||+.|....||+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~dd-kyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDD-KYIVTGSGDKKATVYE 702 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCc-eEEEecCCCcceEEEE
Confidence 99999999999999999999999988888777664 6789999999998 8999999998877763
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.2e-31 Score=251.87 Aligned_cols=284 Identities=20% Similarity=0.231 Sum_probs=229.2
Q ss_pred ccccceEEEEeeCCCCCEEEEec--CCCcEEEEEcccC----------CcceeeeeccCCCceeEEEeCCCCCEEEEEec
Q 013475 143 HHTKAVNSINWSPTHAHLLASAG--MDQSICIWNVWSR----------DQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY 210 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~--~dg~i~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 210 (442)
.+...|.++..+|| +..++||+ .||.++||+.+.- -.+.+.....|.+.|+|+.|++||++||+|++
T Consensus 11 H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34567999999999 99999999 9999999986311 12445566679999999999999999999999
Q ss_pred CCcEEEEECCC------------------CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec
Q 013475 211 DCSSRLVDVEK------------------GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 211 d~~v~vwd~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (442)
|+.|.||.... .+++..+. |...|..++|+|++ .+|++++.|++|.+||.++.+.+..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence 99999999872 12445555 89999999999985 999999999999999999999999999
Q ss_pred cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc-----ccceeeeEEecCCCCeeEEEe---
Q 013475 272 QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-----EAYTCPCVRHHPFDPYFVAQS--- 343 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~--- 343 (442)
+|.+.|..+.|.|-|++|++-++ |++|++|++.+-...+.+... .......+.|+|||.+|++..
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsd-------Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSD-------DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred cccccccceEECCccCeeeeecC-------CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 99999999999999999999999 999999997764444433322 234567899999999999843
Q ss_pred -CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC-----CC------------EEEEecCCCcEEEEecCCcee
Q 013475 344 -NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD-----GE------------KLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 344 -~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~------------~l~~g~~dg~i~iwd~~~~~~ 405 (442)
....+.|.+-.+-..- ..+.+| ...+.++.|+|. .+ .+|+|+.|++|.||.....++
T Consensus 242 ~~~~~~~IieR~tWk~~---~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVD---KDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred CCcceeEEEecCCceee---eeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 2346777776443211 344444 467889999882 12 678999999999999877776
Q ss_pred eEeee-ccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 406 ERKIK-AYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 406 ~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+.... -....|.+++|+||| ..|+.||.||+|.+.
T Consensus 317 l~vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 317 LFVIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALI 352 (942)
T ss_pred hhhhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEE
Confidence 65443 236789999999999 899999999999875
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=230.14 Aligned_cols=279 Identities=16% Similarity=0.253 Sum_probs=235.9
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
..+.|.+++|+|....-+|+.+. -.+.||+..+ ....+++......|+++.|-.||++|++|...|.|+|+|+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecch--hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH
Confidence 34789999999975555666553 5899999844 35555566677899999999999999999999999999977766
Q ss_pred EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC-CCEEEeccCCCCCcCC
Q 013475 224 ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN-GKQFVSSSDVSGSNMS 301 (442)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~ 301 (442)
.+..+. |..++..+.|+|.+..+|++|+.|+.+++||+.+......+.+|...|.|.+|+|. +..+++|+.
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY------- 174 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY------- 174 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC-------
Confidence 666666 99999999999999899999999999999999998877789999999999999995 558889998
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
||.|++||++... .......+..++..+.+-|.|..++++ .++.+++||+.++.+..... ..|...|+|+.+..
T Consensus 175 Dg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~qll~~~----~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 175 DGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQLLTSM----FNHNKTVTCLRLAS 248 (487)
T ss_pred CceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCceehhhh----hcccceEEEEEeec
Confidence 9999999999875 445667788899999999999888876 46789999999665442211 12456799999999
Q ss_pred CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 382 DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 382 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++ +.++.|..||.+.+
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd-~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDD-QTVVIGMSNGLVSI 305 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCC-ceEEEecccceeee
Confidence 99999999999999999999899988887 58899999999998 78999999998754
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.1e-31 Score=263.27 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=213.8
Q ss_pred CCcEEEEEcccCCccee---eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC--------cEEEeeeCCcceE
Q 013475 167 DQSICIWNVWSRDQKLA---RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--------IETQSFREELAVR 235 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~v~ 235 (442)
+|.+++|+......... ..+..|.+.|.+++|++++++|++|+.|+.|+|||+... .....+.+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 67788888743221111 123458999999999999999999999999999998642 1223344567899
Q ss_pred EEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 236 VVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 236 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
+++|++....+|++++.||.|++||+.+++.+..+.+|.+.|.+++|++ ++.+|++++. |+.|++||++++.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-------Dg~v~iWd~~~~~ 609 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-------DGSVKLWSINQGV 609 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-------CCEEEEEECCCCc
Confidence 9999986568999999999999999999999999999999999999996 7899999998 9999999999877
Q ss_pred ccceeeccccceeeeEEec-CCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC
Q 013475 315 PLSKQVYVEAYTCPCVRHH-PFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG 393 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 393 (442)
.+..+.. ...+.++.|+ +++.++++|+.|+.|++||++..... +..+. .|...|..+.|. ++.+|++++.|+
T Consensus 610 ~~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~--~~~~~--~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 610 SIGTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP--LCTMI--GHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred EEEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc--ceEec--CCCCCEEEEEEe-CCCEEEEEECCC
Confidence 6655542 3467888885 57899999999999999999865321 12233 344678899997 788999999999
Q ss_pred cEEEEecCC------ceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 394 SIYFYNCRS------SELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 394 ~i~iwd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|+|||+.. .+++..+.+|...+..++|++++ .+|++|+.||.|+|||
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYH 736 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEE
Confidence 999999974 35678899999999999999998 7999999999999996
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=216.77 Aligned_cols=243 Identities=21% Similarity=0.269 Sum_probs=204.2
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCC--EEEEEecC
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL--FVLSCGYD 211 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d 211 (442)
....+..+..|.+.|++++.+ +.++|+|+.|-+|+|||+. .......+-.|.+.|+++.|.+.-. .|++|+.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~--k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMR--KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred eeeccccccccccceeEEEec---ceeEeccCCCCcEEEEecc--chhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence 345678889999999999998 8899999999999999994 4466677777999999999999654 89999999
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
|.|.+|+....+++..++ |.+.|+.++++|.+ ++.++.+.|+.++.||+-.|+....+.... .-+.+.|+|.|.+|+
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFV 184 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEE
Confidence 999999999999999999 88899999999996 899999999999999999988665554332 234599999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
.+. ...|-+|.+.+......+...
T Consensus 185 v~~--------~~~i~i~q~d~A~v~~~i~~~------------------------------------------------ 208 (362)
T KOG0294|consen 185 VSG--------RNKIDIYQLDNASVFREIENP------------------------------------------------ 208 (362)
T ss_pred EEe--------ccEEEEEecccHhHhhhhhcc------------------------------------------------
Confidence 988 588999999876544332211
Q ss_pred ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEE--cCCCCCEEEEeeCCCcEEEcC
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF--HPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd 442 (442)
..+.++.|- ++.+|++|..|+.|.+||.++..+...+.+|...|.++.+ .|++ .+|+|+|.||.|+|||
T Consensus 209 -~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 209 -KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWD 279 (362)
T ss_pred -ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEE
Confidence 113344443 6779999999999999999999999999999999999985 4555 7999999999999997
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.2e-31 Score=232.33 Aligned_cols=244 Identities=26% Similarity=0.373 Sum_probs=213.6
Q ss_pred eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC
Q 013475 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR 262 (442)
Q Consensus 184 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (442)
..+.+|...|.+++|++++++|++++.||.|++|++.+++....+. +...+..+.|++++ .+|++++.+|.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcC
Confidence 4566899999999999999999999999999999999987777666 77788899999986 889999999999999999
Q ss_pred CCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE
Q 013475 263 TGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (442)
+++.+..+..|...|.++.|+++++++++++. ++.|.+||+++.+...... .+...+.++.+++++.+++++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-------DKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecC-------CCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEE
Confidence 88888888889889999999999999999987 9999999999766554444 455679999999998888888
Q ss_pred eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 343 SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 343 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
+.++.+++||........ .+. .+...+.++.|+++++.|++++.+|.|++||+.+++.+..+..|...+.++.|+
T Consensus 154 ~~~~~i~i~d~~~~~~~~---~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVA---TLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred cCCCcEEEEEccccccce---eEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 889999999998655442 233 333568899999999999999999999999999999998888899999999999
Q ss_pred CCCCCEEEEeeCCCcEEEcC
Q 013475 423 PILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 423 p~~~~~l~s~~~dg~i~iwd 442 (442)
+++ .++++++.||.|++||
T Consensus 229 ~~~-~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 229 PDG-YLLASGSEDGTIRVWD 247 (289)
T ss_pred CCC-cEEEEEcCCCcEEEEE
Confidence 996 7888888899999996
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-31 Score=236.02 Aligned_cols=270 Identities=19% Similarity=0.312 Sum_probs=227.4
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR 229 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 229 (442)
-+.|+. .+.|+.|. ...|++|+..++. .......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWss--~n~laVal-g~~vylW~~~s~~--v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSS--ANVLAVAL-GQSVYLWSASSGS--VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhccc--CCeEEEEe-cceEEEEecCCCc--eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 366774 45777775 4589999986653 333344348999999999999999999999999999999988887777
Q ss_pred --CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE-eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEE
Q 013475 230 --EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE-YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIV 306 (442)
Q Consensus 230 --~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 306 (442)
|...|.+++|+ ...+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|++++++|+. |+.+.
T Consensus 257 ~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn-------DN~~~ 326 (484)
T KOG0305|consen 257 GSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN-------DNVVF 326 (484)
T ss_pred CCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC-------ccceE
Confidence 68899999998 37899999999999999998776554 8889999999999999999999998 99999
Q ss_pred EEeCCCCcccceeeccccceeeeEEecCCCCe-eEE--EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC
Q 013475 307 VWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY-FVA--QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG 383 (442)
Q Consensus 307 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 383 (442)
|||.....+. .....|...|..++|+|-..- |++ |+.|++|++||..++..+..+ .....|+.+.|++..
T Consensus 327 Iwd~~~~~p~-~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------dtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 327 IWDGLSPEPK-FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------DTGSQVCSLIWSKKY 399 (484)
T ss_pred eccCCCcccc-EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------ccCCceeeEEEcCCC
Confidence 9999655444 445567779999999997664 444 567999999999987655432 334679999999998
Q ss_pred CEEEE--ecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 384 EKLVS--GSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 384 ~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+-|++ |..++.|.||++.+.+.+..+.+|...|..++++||| ..+++|+.|.++++|+
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWN 459 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEecc
Confidence 77776 4567889999999999999999999999999999999 7999999999999996
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=236.65 Aligned_cols=248 Identities=20% Similarity=0.301 Sum_probs=214.7
Q ss_pred cceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCC-CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.++++|. |...|..++|+.+| ..|++++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecceee
Confidence 467888999999999999999 899999999999999999977 88999998 89999999999997 888999999999
Q ss_pred EEEECCCCceEEEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC
Q 013475 257 RLWDIRTGKVAHEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF 335 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (442)
++||+++|+++..+... ..+.|+.|.|++ +.|++|+. |+.|+.||+++++.++... .+-..+..+.|-++
T Consensus 283 KlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDE 353 (503)
T ss_pred eeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecC-------CCcEEEEeccchHHHHHHH-hhhhheeeeEEccC
Confidence 99999999999888754 577999999998 78888887 9999999999998665543 45568999999999
Q ss_pred CCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc---eeeEeeecc
Q 013475 336 DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS---ELERKIKAY 412 (442)
Q Consensus 336 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~ 412 (442)
++++++.+.++.++||+......+..+.....|. .-++..+|+++++++-+.|+.|.+|.+... .....+.+|
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hs----mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHT----MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhcc----CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence 9999999999999999998877665444333333 458899999999999999999999986542 334567777
Q ss_pred --CCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 413 --EQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 413 --~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+--..+.||||| .+|++|+.||.+.+||
T Consensus 430 ~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWD 460 (503)
T ss_pred eccCceeeEEEcCCC-CeEEeecCCccEEEee
Confidence 3556778999999 7999999999999997
No 67
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=215.52 Aligned_cols=249 Identities=22% Similarity=0.286 Sum_probs=214.1
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC-CEEEEEecCCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG-LFVLSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~ 213 (442)
.+....+++|++.|..+.|.+| ++.|++++.|++|+.||.+++ +....+++|..-|+.+.-+.-| .++.+++.|++
T Consensus 80 ceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 80 CENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred ccceeeeccccceeEeeeeccC-CCEEEEecCCceEEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 3556678899999999999999 999999999999999999554 8888899999999999854434 56778888999
Q ss_pred EEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 214 SRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+++||+++...++++..+..++++.|..++ ..+++|+-|+.|++||++.+...+.+.+|..+|+.+..+++|.++.+-+
T Consensus 157 ~kl~D~R~k~~~~t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred EEEEeecccchhhccccceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc
Confidence 999999999999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccce---eecc--c--cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSK---QVYV--E--AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~---~~~~--~--~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
. |.++++||++....-.. +... + .......+|+|++..+-+|+.|+.+++||......+ +.
T Consensus 236 M-------d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l-----yk 303 (338)
T KOG0265|consen 236 M-------DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL-----YK 303 (338)
T ss_pred c-------cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE-----EE
Confidence 8 99999999987443322 1111 1 234556789999999999999999999999875433 33
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
..+|.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 304 lpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 304 LPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 345568899999999999999999999998744
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=227.23 Aligned_cols=262 Identities=18% Similarity=0.288 Sum_probs=213.1
Q ss_pred hcCCCccCcccccc-CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEe
Q 013475 120 LRHLPKSHVRRSKI-PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKW 198 (442)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 198 (442)
...+.+..+..|.. ...++..|.||++.|.|+.|. .+.+++|+.|.+|+|||+++ .+++.++-+|...|..+.|
T Consensus 211 VSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred hcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEE
Confidence 33344444444433 456788999999999999997 56999999999999999955 4888888899999999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcEEE---eee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC
Q 013475 199 SQQGLFVLSCGYDCSSRLVDVEKGIETQ---SFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274 (442)
Q Consensus 199 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (442)
+. .++++++.|.++.|||+.....+. .+. |...|+.+.|+ .+++++++.|.+|++|++.+++.++++.+|.
T Consensus 286 ~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 286 SN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred eC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhccc
Confidence 64 499999999999999998765332 222 88899999996 3699999999999999999999999999999
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
..|.|+.+ .|+++++|+. |.+|++||+..+.++.... .|..-+.++.|. .+.+++|..||.|++||+.
T Consensus 361 RGIAClQY--r~rlvVSGSS-------DntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 361 RGIACLQY--RDRLVVSGSS-------DNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred ccceehhc--cCeEEEecCC-------CceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecc
Confidence 99999887 5899999998 9999999999998775544 555578888885 6789999999999999998
Q ss_pred CCccccc----ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 355 PPFRLDK----FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 355 ~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
....... +.......+.+.|..+.| |...|++++.|.+|.|||+.++..
T Consensus 429 aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 429 AALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 7654311 111222345577888888 566899999999999999987644
No 69
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-30 Score=210.78 Aligned_cols=272 Identities=18% Similarity=0.275 Sum_probs=221.9
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
+..|..|.|+|. ++.|+.++.||++++||+.. ..+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++..
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~--~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPA--NSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEeccc--hhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 678999999988 66777778999999999944 45666666 999999999987 45789999999999999999998
Q ss_pred EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 225 TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
.+.-.|...+.|+.+++. ...+++|+.|++|++||.+.......+... ..|.++.. .|+.|+.|+. +..
T Consensus 88 ~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~-------~r~ 156 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTS-------DRK 156 (323)
T ss_pred eeeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEeec-------Cce
Confidence 888889999999999986 589999999999999999975555555443 47877766 4778888777 999
Q ss_pred EEEEeCCCCcccc-eeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc-ccceeEeecc-------cccCcE
Q 013475 305 IVVWDVSREVPLS-KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL-DKFKRYESHG-------VSGFPI 375 (442)
Q Consensus 305 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~-------~~~~v~ 375 (442)
+.+||+++..... .....-...+.++++.|++.-+++++-+|.|.+=.++..... .+--.++-|. .-..|.
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN 236 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN 236 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence 9999999865443 233344568999999999999999999999998777665221 1112222221 123477
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
+++|+|-...|++|+.||.|.+||+.+.+.+..+...+..|..++|+.+| ..||.++
T Consensus 237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-~~LAia~ 293 (323)
T KOG1036|consen 237 AIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-SLLAIAS 293 (323)
T ss_pred eeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-CeEEEEe
Confidence 89999999999999999999999999999999998888889999999999 6888876
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2e-30 Score=240.61 Aligned_cols=271 Identities=20% Similarity=0.272 Sum_probs=235.3
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeee-eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV-LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
.|...|.+..|.. .++++++.|++|++||..+ ...+.. +.+|.+.|.+++|...+.+|++|+.|.++++||..+
T Consensus 206 ~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 206 TDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cCcchhhhheeec---CeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 3677899999993 3789999999999999844 455655 999999999999988788999999999999999999
Q ss_pred CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 222 GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 222 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
|++...+. |...+.++...+ .++++|+.|.+|++|++.+++.+..+.+|.++|.++.++ +.++++++.
T Consensus 281 g~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~------ 349 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY------ 349 (537)
T ss_pred CcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec------
Confidence 99999999 888999988864 678889999999999999999999999999999999987 889999998
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC-cccccceeEeecccccCcEEEEE
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP-FRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
|++|++||+.+.+.+..... |...|.++.+... ..++.|+.|+.|++||+++. .++ ..+.+|. ..+. .+
T Consensus 350 -d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~---~tl~~h~--~~v~--~l 419 (537)
T KOG0274|consen 350 -DGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI---HTLQGHT--SLVS--SL 419 (537)
T ss_pred -CceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh---hhhcCCc--cccc--cc
Confidence 99999999999888877665 7789999988776 89999999999999999998 444 4444443 3333 33
Q ss_pred ccCCCEEEEecCCCcEEEEecCCceeeEeeec-cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 380 SLDGEKLVSGSSDGSIYFYNCRSSELERKIKA-YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 380 s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+++|++++.||+|++||..++++++.+.+ |...|..+++. + ..+++++.||.+++||
T Consensus 420 ~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~--~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 420 LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-K--EEILCSSDDGSVKLWD 480 (537)
T ss_pred ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-c--ceEEEEecCCeeEEEe
Confidence 44678999999999999999999999999998 67899999888 2 4788888999999997
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-30 Score=238.99 Aligned_cols=286 Identities=17% Similarity=0.260 Sum_probs=233.2
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
+.++..|..|.++|..++|+|+ +.++++|+.|..|+||+. ...+++.++.+|-..|..+.|++.-.+++++|.|.+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnY--k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNY--KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred hhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEec--ccceehhhhccccceeEEeeccCCCceEEEccCCCeE
Confidence 6788899999999999999999 999999999999999999 5558999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC--------C---------------------
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT--------G--------------------- 264 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~--------------------- 264 (442)
+||+..+.+++..+. |...|.|.+|+|.. .++++++-|.+|++||+.. +
T Consensus 118 rIWNwqsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da 196 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA 196 (1202)
T ss_pred EEEeccCCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence 999999999999998 89999999999984 8999999999999999841 1
Q ss_pred ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc-eeeccccceeeeEEecCCCCeeEEEe
Q 013475 265 KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS-KQVYVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
-..+.+.+|...|+-++|+|.-..|++|++ |..|++|.+...+.-. .....|...+.++.|+|....+++.+
T Consensus 197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~D-------DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGAD-------DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred eeeeeecccccccceEEecCCcceEEecCC-------cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecC
Confidence 012456789999999999999999999999 9999999998754332 23456778999999999999999999
Q ss_pred CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce-------------------
Q 013475 344 NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE------------------- 404 (442)
Q Consensus 344 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~------------------- 404 (442)
.|+.|++||+.....+..++ . .....+.++-+|..+++++|...| +.||.++...
T Consensus 270 EDksirVwDm~kRt~v~tfr---r--endRFW~laahP~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~ 343 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFR---R--ENDRFWILAAHPELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIR 343 (1202)
T ss_pred CCccEEEEecccccceeeee---c--cCCeEEEEEecCCcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEE
Confidence 99999999999876664333 2 224577889999998888876554 5555544211
Q ss_pred ----------eeEeeecc---CCceeEEEEcCCCCCEEEEeeCCCc
Q 013475 405 ----------LERKIKAY---EQACIDVAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 405 ----------~~~~~~~~---~~~v~~~~~~p~~~~~l~s~~~dg~ 437 (442)
.+..++.. ..++.++.++|..+..|++...|+.
T Consensus 344 ~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~ 389 (1202)
T KOG0292|consen 344 SYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG 389 (1202)
T ss_pred eeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence 11112211 2467789999987556666555543
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=220.09 Aligned_cols=279 Identities=16% Similarity=0.216 Sum_probs=241.0
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
..|+++...+. ...+++|+.|..+.++|. ..+..+.+++||...|+.+.|+++...+++++.|..|+||......+.
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~--~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDK--PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEec--chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 57889999887 778999999999999998 556889999999999999999999999999999999999999887766
Q ss_pred Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC--CCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 226 QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS--LGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 226 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
.... |...|+.+..+|.| .||+++++|++..+.|++++..+...... .-.+++.+|+|||..|.+|.. |
T Consensus 297 ~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-------d 368 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-------D 368 (506)
T ss_pred cccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC-------C
Confidence 6665 99999999999996 89999999999999999999887665542 346899999999999999998 9
Q ss_pred CeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC
Q 013475 303 NSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD 382 (442)
Q Consensus 303 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 382 (442)
+.|+|||+.....+..+. .|...|..+.|+.+|-+++++++|+.|++||++..... +++..... ..+..+.|...
T Consensus 369 ~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~---kt~~l~~~-~~v~s~~fD~S 443 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF---KTIQLDEK-KEVNSLSFDQS 443 (506)
T ss_pred ceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc---ceeecccc-ccceeEEEcCC
Confidence 999999999988655554 48889999999999999999999999999999987654 33333322 24789999999
Q ss_pred CCEEEEecCCCcEEEEecC--CceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 383 GEKLVSGSSDGSIYFYNCR--SSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 383 g~~l~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
|.||+.++.|=.|++++-. +..++..+..|.+..+++.|..+. ++++++|.|..++++
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLY 503 (506)
T ss_pred CCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc-eEEeeccchhheEEe
Confidence 9999999888666666633 457788888889899999999998 899999999999886
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-29 Score=194.04 Aligned_cols=289 Identities=17% Similarity=0.221 Sum_probs=231.8
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc------C----C---cceeeeeccCCCceeEEEeCCCCC
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS------R----D---QKLARVLNFHSAAVNDVKWSQQGL 203 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~------~----~---~~~~~~~~~h~~~v~~l~~~~~~~ 203 (442)
.+..|. .+..|.+++|+|. |.+.+.|+..++++|..... . . ..+.+.-+.|.+.|+|.+|+|+|.
T Consensus 25 ~i~~l~-dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 25 AINILE-DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEec-chhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 344443 5678999999999 88999999999999886411 0 0 112233456899999999999999
Q ss_pred EEEEEecCCcEEEEECCCCcEE-----Eeee-CCcceEEEEEccC---CCCEEEEee-CCCcEEEEECCCCceEEEeccC
Q 013475 204 FVLSCGYDCSSRLVDVEKGIET-----QSFR-EELAVRVVKFHPE---NSNLFLSGG-SKGLLRLWDIRTGKVAHEYIQS 273 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~~~-----~~~~-~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 273 (442)
+|++|+.|.+|++.-++...+. ..|. |.+.|..++|..+ +..+|++++ .|..|++-|...++..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 9999999999999876543221 2333 8999999999643 346666654 4778999999999999999999
Q ss_pred CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc------ccceeeeEEecCCCCeeEEEeCCCe
Q 013475 274 LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV------EAYTCPCVRHHPFDPYFVAQSNGNY 347 (442)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (442)
.+.|..+ ++-+|.+|++++. |.+|++||++-...+...... +...+..++..|.|+++++|-.|..
T Consensus 183 tghilal-yswn~~m~~sgsq-------dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQ-------DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred cccEEEE-EEecCcEEEccCC-------CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 9999876 3557899999998 999999999988776654432 2357899999999999999999999
Q ss_pred EEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc----eeeEeeeccCCceeEEEEcC
Q 013475 348 IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS----ELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 348 i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~p 423 (442)
..+||++.+..+. .+ +.|...|.++.|||.-.|+++++.|.+|++-|++.. -.+..+..|...+..+.|+|
T Consensus 255 c~lydirg~r~iq---~f--~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQ---RF--HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred eEEEEeeCCceee---ee--CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 9999999987653 33 455677999999999999999999999999998742 22344557899999999999
Q ss_pred CCCCEEEEeeCCCcEEEc
Q 013475 424 ILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iw 441 (442)
.. .-+++.+.|.++.+|
T Consensus 330 ~d-~sfisssadkt~tlw 346 (350)
T KOG0641|consen 330 QD-FSFISSSADKTATLW 346 (350)
T ss_pred cc-ceeeeccCcceEEEe
Confidence 98 788999999999999
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=221.03 Aligned_cols=252 Identities=19% Similarity=0.346 Sum_probs=219.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
.+.+.+|+||+..|+.+.|+++ ...+++++.|..|+||.... .........|.++|+.+..+|.|.||++++.|++.
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~--~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPL--SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred hhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecccc--ccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence 4567789999999999999999 88899999999999999844 34556667799999999999999999999999999
Q ss_pred EEEECCCCcEEEeeeCC---cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 215 RLVDVEKGIETQSFREE---LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
.+.|++++..+....++ -.+++.+||||| .+|.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|-+|++
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT 406 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE
Confidence 99999999998887754 458999999997 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
+.+ |+.|++||+|..+...++.......+.++.|...|.+++.++.+=.|++++..+..- ..+..+ +.+.
T Consensus 407 ~ad-------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W-~~~~~~--~~~s 476 (506)
T KOG0289|consen 407 AAD-------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW-TEIKEL--ADHS 476 (506)
T ss_pred Eec-------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc-eeeehh--hhcc
Confidence 998 999999999999988888888888999999999999999997777777776544321 122323 3334
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
+..+.+.|..+.+++++++.|..++++.+
T Consensus 477 g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 477 GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeeecccceEEeeccchhheEEeec
Confidence 66788999999999999999999888754
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.8e-30 Score=221.82 Aligned_cols=286 Identities=16% Similarity=0.208 Sum_probs=234.8
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc--e-------------eeee-ccCCCceeEEEeCCC
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK--L-------------ARVL-NFHSAAVNDVKWSQQ 201 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~--~-------------~~~~-~~h~~~v~~l~~~~~ 201 (442)
...+..|.-+|+||+++|+ .++.++++.||+|.=|++.++... . ...- +.|...|.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 5677889999999999999 899999999999999998665321 0 0111 368899999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEE
Q 013475 202 GLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 202 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 280 (442)
++||++|+.|..|.||+.++.+.++.+. |.+.|.+++|-.. .+.+++++.|+.|++|++.....+.++.+|.+.|..|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999999999999988 8999999999875 6889999999999999999988899999999999999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD 360 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 360 (442)
....-++.+.+++. |+++++|++.... +.+...+...+.|++|-. ...|++|+.+|.|.+|++-....+.
T Consensus 293 daL~reR~vtVGgr-------DrT~rlwKi~ees--qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 293 DALSRERCVTVGGR-------DRTVRLWKIPEES--QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred chhcccceEEeccc-------cceeEEEeccccc--eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCcee
Confidence 99888888888877 9999999995543 334445566788888764 5688999999999999998766553
Q ss_pred cceeEeec-------ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc----eeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 361 KFKRYESH-------GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS----ELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 361 ~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
....-.+. .+..+|++++..+..+++++|+.+|.|++|-+..+ +++..+. ..+.|++++|+.+|..++
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEE
Confidence 32222111 11238999999999999999999999999999876 4555555 578999999999994455
Q ss_pred EEeeCCC
Q 013475 430 GSCSWNG 436 (442)
Q Consensus 430 ~s~~~dg 436 (442)
+..+...
T Consensus 442 agiGkEh 448 (479)
T KOG0299|consen 442 AGIGKEH 448 (479)
T ss_pred Eeccccc
Confidence 5555443
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-29 Score=206.44 Aligned_cols=249 Identities=17% Similarity=0.278 Sum_probs=208.2
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeC--CCcEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGS--KGLLR 257 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~--dg~i~ 257 (442)
+..+.+......|+++.|+.+|.+|++++.|.++++||..+++.++.+. .+..+..++|.... +.++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceE
Confidence 4445566567899999999999999999999999999999999999988 67788999997764 55565555 88999
Q ss_pred EEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC
Q 013475 258 LWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP 337 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (442)
..++.+.+.++-|.+|...|++|+.+|-+..+++++. |++|++||++..++...+... .-...++.|+|-
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~-------D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GL 153 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL-------DKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGL 153 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc-------CCeEEeeEecCCCCceEEecC---CCcceeECCCCc
Confidence 9999999999999999999999999999999999998 999999999976655443322 345689999999
Q ss_pred eeEEEeCCCeEEEeeCCCCcccccceeEeec-ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCce
Q 013475 338 YFVAQSNGNYIAIFSSTPPFRLDKFKRYESH-GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQAC 416 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v 416 (442)
+++++...+.|++||++.-..- .+..+... ......+.+.||+||++|+.+...+.+++.|.-+|..+.++..+...-
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred EEEEecCCCeEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 9999999999999999864321 11222211 333557889999999999999999999999999999999998774432
Q ss_pred ---eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 417 ---IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 417 ---~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+..|.||+ +++++|+.||+|.||+
T Consensus 233 ~~~~~a~ftPds-~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 233 NLPLSATFTPDS-KFVLSGSDDGTIHVWN 260 (311)
T ss_pred CcceeEEECCCC-cEEEEecCCCcEEEEE
Confidence 577899999 8999999999999996
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=7.6e-32 Score=212.73 Aligned_cols=255 Identities=23% Similarity=0.317 Sum_probs=220.3
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
-..+.-+.+|.||++.|+...++.+ ....|+++.|-+-+|||.-++ ..+..+. |..-|..++|+.|.++|++|+.+
T Consensus 46 g~tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tg--delhsf~-hkhivk~~af~~ds~~lltgg~e 121 (334)
T KOG0278|consen 46 GDTGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTG--DELHSFE-HKHIVKAVAFSQDSNYLLTGGQE 121 (334)
T ss_pred CCCCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhh--hhhhhhh-hhheeeeEEecccchhhhccchH
Confidence 3457778999999999999999998 788899999999999998554 6677777 99999999999999999999999
Q ss_pred CcEEEEECCCCc-EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 212 CSSRLVDVEKGI-ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 212 ~~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
..++|||++..+ ....+. |.+.|..+.|...+ +.|++...|++|++||.+++..++++... .+|+++.++++|++|
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRIL 199 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEE
Confidence 999999998753 344555 89999999999874 78888899999999999999999988754 789999999999999
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
.++. .+.|++||..+...++....+ ..|.+...+|+...+++|++|..++.||..++..+..+ ...
T Consensus 200 Tia~--------gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~----nkg 265 (334)
T KOG0278|consen 200 TIAY--------GSSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY----NKG 265 (334)
T ss_pred EEec--------CceeEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeec----ccC
Confidence 8887 699999999988777665443 45888999999999999999999999999998776442 235
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceee
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE 406 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~ 406 (442)
+.+.|.++.|+|+|...++|++||+|++|.+..++..
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 5688999999999999999999999999998765543
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=207.08 Aligned_cols=241 Identities=17% Similarity=0.279 Sum_probs=207.4
Q ss_pred eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEE
Q 013475 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWD 260 (442)
Q Consensus 184 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 260 (442)
+.+.+|...|.+++|+.+|..|++++.|+++++|+++..+...... |.+.|..++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567799999999999999999999999999999999886655544 7788999999999899999999999999999
Q ss_pred CCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE
Q 013475 261 IRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (442)
++.++++..+....+.| .+.|+|+|.+++.+.. |..|.+.|.++.+...... ....+..+.|+-++.+++
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k-------dD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNK-------DDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFF 163 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecC-------cccEEEEEecccceeehhc--ccceeeeeeecCCCCEEE
Confidence 99999988877655554 5889999999999998 9999999999876654433 233567788998888888
Q ss_pred EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEE
Q 013475 341 AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVA 420 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 420 (442)
..+..|+|.|........+ ..++.| ...+.++.|+|+|+|||+|+.|-.+.+||++..-+++.+..+.-+|..+.
T Consensus 164 lt~GlG~v~ILsypsLkpv---~si~AH--~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPV---QSIKAH--PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred EecCCceEEEEeccccccc---cccccC--CcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE
Confidence 8888899999988754443 444444 46688999999999999999999999999999889999999999999999
Q ss_pred EcCCCCCEEEEeeCCCcEEE
Q 013475 421 FHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~i 440 (442)
|+.+| ++||++++|..|-|
T Consensus 239 FS~dg-~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 239 FSHDG-RMLASASEDHFIDI 257 (313)
T ss_pred eccCc-ceeeccCccceEEe
Confidence 99999 89999999988755
No 79
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.2e-30 Score=209.51 Aligned_cols=297 Identities=18% Similarity=0.242 Sum_probs=234.3
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
..|.++.++|..-. -.|+.|++. |.+||+|+.||.|.|||+.+. ...+.+.+|..+|++++|+++|+.|++++.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 44566667776333 789999999 999999999999999999554 6778899999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC----CCEeEEEEeeCCC
Q 013475 212 CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL----GPILDVEFTINGK 287 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~ 287 (442)
..|++||+..|.+++.+....+|+...|+|...+.+++.-.+..-.+.++.......--.... ....+..|.+.|+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 999999999999999999999999999999877777777666666666665432111111111 1223346889999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc------cc
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL------DK 361 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~------~~ 361 (442)
++++|.. .|.+.+||..+.+.+..........|..+.++-.|.+|+..+.|+.|+.|+....... ..
T Consensus 167 yIitGts-------KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 167 YIITGTS-------KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred EEEEecC-------cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence 9999998 9999999999988777766666678899999999999999999999999998742221 11
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecC-CCcEEEEecCCceeeEeeeccC-CceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSS-DGSIYFYNCRSSELERKIKAYE-QACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
..++..-.....-.+++||.+|.|++.|+. ...++||.-..|.+++.+.|.. ....++.|+|-. -++++- ..|.++
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~ 317 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR-PIIASI-ASGVVY 317 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce-eeeeec-cCCceE
Confidence 111111111222346899999999998874 4569999999999999998876 578899999997 477776 789999
Q ss_pred EcC
Q 013475 440 VYE 442 (442)
Q Consensus 440 iwd 442 (442)
||.
T Consensus 318 iw~ 320 (405)
T KOG1273|consen 318 IWA 320 (405)
T ss_pred EEE
Confidence 994
No 80
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=2.8e-29 Score=232.83 Aligned_cols=235 Identities=13% Similarity=0.105 Sum_probs=185.4
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-----cceeeeeccCCCceeEEEeCCCC-CEEEEEecCCc
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-----QKLARVLNFHSAAVNDVKWSQQG-LFVLSCGYDCS 213 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~ 213 (442)
.+.+|.+.|++++|+|.++++|++|+.|++|+|||+.+.. ...+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999338899999999999999996542 13566788999999999999975 79999999999
Q ss_pred EEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCC-EeEEEEeeCCCEEEe
Q 013475 214 SRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGP-ILDVEFTINGKQFVS 291 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~ 291 (442)
|+|||+++++.+..+. |...|.+++|+|++ .+|++++.|+.|++||+++++.+..+..|.+. +..+.|.+++..+++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999888887 88899999999996 89999999999999999999999888888764 456788988888876
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccce-eeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCcccccceeEeecc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSK-QVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
++. ....|+.|++||+++...... ........+....|++++.++++++ .|+.|++||+.+...... .. ..
T Consensus 229 ~G~---s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~---~~-~~ 301 (493)
T PTZ00421 229 LGC---SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC---SS-YS 301 (493)
T ss_pred Eec---CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE---ee-cc
Confidence 542 112379999999987543322 2223334455667899999988877 599999999987654321 11 12
Q ss_pred cccCcEEEEEccC
Q 013475 370 VSGFPIKCSFSLD 382 (442)
Q Consensus 370 ~~~~v~~~~~s~~ 382 (442)
.......++|.|.
T Consensus 302 s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 SVEPHKGLCMMPK 314 (493)
T ss_pred CCCCCcceEeccc
Confidence 2234556777774
No 81
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=5.3e-29 Score=231.89 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=190.4
Q ss_pred ecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEEECCCCc--------EEEeee-CCcc
Q 013475 164 AGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLVDVEKGI--------ETQSFR-EELA 233 (442)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~--------~~~~~~-~~~~ 233 (442)
|+.++.|++|+. .....+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+. |...
T Consensus 50 GG~~gvI~L~~~--~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQ--MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeec--CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 667889999998 444677888999999999999996 7899999999999999998642 223344 7889
Q ss_pred eEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC
Q 013475 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE 313 (442)
Q Consensus 234 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~ 313 (442)
|.+++|+|++..+|++++.|+.|++||+++++.+..+. +...|.+++|+++|.+|++++. |+.|+|||++++
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~-------D~~IrIwD~Rsg 199 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV-------GKHMHIIDPRKQ 199 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec-------CCEEEEEECCCC
Confidence 99999999976677899999999999999998777775 5578999999999999999988 999999999998
Q ss_pred cccceeeccccce----eeeEEecCCCCeeEEEeCCC----eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE
Q 013475 314 VPLSKQVYVEAYT----CPCVRHHPFDPYFVAQSNGN----YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK 385 (442)
Q Consensus 314 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 385 (442)
..+.....+.... +....|++++.++++++.++ .|++||++...... .........+.+......++|.+
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl--~~~~ld~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL--VTMSIDNASAPLIPHYDESTGLI 277 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce--EEEEecCCccceEEeeeCCCCCE
Confidence 7776554333211 12234568889999877664 79999998643321 22222332333333344556899
Q ss_pred EEEecCCCcEEEEecCCceeeEeeec--cCCceeEEEEcCCC
Q 013475 386 LVSGSSDGSIYFYNCRSSELERKIKA--YEQACIDVAFHPIL 425 (442)
Q Consensus 386 l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~ 425 (442)
+++|+.|+.|++|++..+.. ..+.. +..++.+++|.|+.
T Consensus 278 ~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 99999999999999987642 22322 46788899999975
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.3e-30 Score=221.94 Aligned_cols=247 Identities=21% Similarity=0.314 Sum_probs=213.2
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSR 215 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~ 215 (442)
..+++.-.+..|+++.|-.| |++||.|...|.|+|||+ .....+..+.+|+.+|..+.|+| ++..|++|+.|+.++
T Consensus 60 ~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~--k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDM--KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecc--ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 34456667899999999999 999999999999999996 43567888999999999999999 567788889999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+||+.+......+. |...|.|.+|+|.+..++++|+.||.|++||++.. ..+.++ .|..+|.++.+-|.|..+++++
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC
Confidence 99999988654555 99999999999988889999999999999999987 555555 4778999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
...|++||+.++.........|...++|+.+..++..|++++-|+.+++||..+- +........+.
T Consensus 216 --------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------Kvv~s~~~~~p 281 (487)
T KOG0310|consen 216 --------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------KVVHSWKYPGP 281 (487)
T ss_pred --------CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce------EEEEeeecccc
Confidence 6999999999877776666668889999999999999999999999999996653 33334455578
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
|.+++.+|++..++.|..||.+.+-+..
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeehhh
Confidence 9999999999999999999988877543
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=208.87 Aligned_cols=256 Identities=14% Similarity=0.254 Sum_probs=202.5
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.+.....+.+|++.|+|+.|+.+ |.+||||+.+|.|+||+..++ .....+...-+.|.-+.|+|.+..|++|+.||.
T Consensus 95 ~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs 171 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS 171 (399)
T ss_pred CCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccC--ceEEEeecccCceEEEEecccccEEEeecCCCc
Confidence 35577889999999999999999 999999999999999999554 555555556678899999999999999999999
Q ss_pred EEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-CCEeEEEEeeCCCEEEe
Q 013475 214 SRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-GPILDVEFTINGKQFVS 291 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~ 291 (442)
+.+|.+.++...+.+. |...+++=.|.|+| +.++++..||+|++||+.+++++..+.... ....++.++..+..++.
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred EEEEECCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 9999999987777777 89999999999996 899999999999999999998887765211 11122222211111111
Q ss_pred ccC----------------------------------------------CCCCcCCCCeEEEEeCCCCcccceeeccccc
Q 013475 292 SSD----------------------------------------------VSGSNMSENSIVVWDVSREVPLSKQVYVEAY 325 (442)
Q Consensus 292 ~~~----------------------------------------------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 325 (442)
|.. +.+.++-||+|.|||+..... +....+..
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~ 328 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHED 328 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCC
Confidence 110 112223499999999987543 33345556
Q ss_pred eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 326 TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
.|..+.|.+ ..+|++++.+|.|+.||.+++... ..+.+| ...|.+++++|+++++++++.|++.+||++.
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~---~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK---FTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceE---EEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 799999999 899999999999999999998765 444444 4779999999999999999999999999864
No 84
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.5e-29 Score=221.45 Aligned_cols=318 Identities=18% Similarity=0.263 Sum_probs=250.2
Q ss_pred hcccccchhhhHhhhhhhcCCCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce
Q 013475 103 VLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL 182 (442)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 182 (442)
+..+.....+.+++.++++.+|.+...+ ++|..+...+.||++.|.||...|. |.+|++|+.||+|+||.+.++ .+
T Consensus 359 L~PR~rK~rlniDpe~LiPkLPsp~dLr-PFPt~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~Tg--Rc 434 (733)
T KOG0650|consen 359 LAPRVRKMRLNIDPESLIPKLPSPKDLR-PFPTRCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATG--RC 434 (733)
T ss_pred hCcccccceecCCHHHhcccCCChhhcC-CCcceeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecc--eE
Confidence 3344455567778888999999988777 8899999999999999999999998 999999999999999999554 77
Q ss_pred eeeeccCCCceeEEEeCCCCC--EEEEEecCCcEEEEEC---------------------------------CCC-----
Q 013475 183 ARVLNFHSAAVNDVKWSQQGL--FVLSCGYDCSSRLVDV---------------------------------EKG----- 222 (442)
Q Consensus 183 ~~~~~~h~~~v~~l~~~~~~~--~l~s~~~d~~v~vwd~---------------------------------~~~----- 222 (442)
+.++. ..+.|.||+|+|.+. .|+++. +..+.|.+. ...
T Consensus 435 vr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~ 512 (733)
T KOG0650|consen 435 VRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEK 512 (733)
T ss_pred EEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhcc
Confidence 77777 567999999999654 344333 333444332 210
Q ss_pred cEEEeeeCCcceEEEEEccCCCCEEEEeeCC---CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 223 IETQSFREELAVRVVKFHPENSNLFLSGGSK---GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
.....+.|...|..+.||..| .+|++..-+ ..|.|+++.......-|....+.|.++.|+|...+|++++
T Consensus 513 ~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT------ 585 (733)
T KOG0650|consen 513 GVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT------ 585 (733)
T ss_pred ceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe------
Confidence 012345588899999999997 777776543 4699999987766666766678899999999999999998
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
...|+|||+.....+++.. .....+..++.+|.|..+++++.++.+..||+.-..... +.+..| ...++.++|
T Consensus 586 --q~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy--k~lr~H--~~avr~Va~ 658 (733)
T KOG0650|consen 586 --QRSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY--KTLRLH--EKAVRSVAF 658 (733)
T ss_pred --ccceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh--HHhhhh--hhhhhhhhh
Confidence 6999999998865554443 444578999999999999999999999999998664432 333333 356889999
Q ss_pred ccCCCEEEEecCCCcEEEEecC------Cc---eeeEeeeccCCc----eeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 380 SLDGEKLVSGSSDGSIYFYNCR------SS---ELERKIKAYEQA----CIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 380 s~~g~~l~~g~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
++.-.++++|+.||++.||.-. .. -++..+++|... |.++.|+|..+ +|++++.||+|++|
T Consensus 659 H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 659 HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLF 732 (733)
T ss_pred ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEee
Confidence 9999999999999999998522 11 246778888654 99999999985 88999999999998
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-30 Score=237.07 Aligned_cols=246 Identities=18% Similarity=0.226 Sum_probs=198.9
Q ss_pred eeeec-cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC---------------------------------------
Q 013475 183 ARVLN-FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--------------------------------------- 222 (442)
Q Consensus 183 ~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~--------------------------------------- 222 (442)
.+.+. .|.+.|.++.|++||+|||+||.|+.|+||.+...
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 33455 79999999999999999999999999999987550
Q ss_pred ---------------------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEE
Q 013475 223 ---------------------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 223 ---------------------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 280 (442)
+++..|. |.+.|..+.|+.+ ++|++++.|.+|++|++...+++..|. |...|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 0112222 6778999999986 699999999999999999988988875 77999999
Q ss_pred EEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 281 EFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 281 ~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
+|+| |.+||++|+- |+.|+||++...+.+.-.. -..-|+++++.|+|++.++|+.+|.+++|+..+....
T Consensus 416 aFnPvDDryFiSGSL-------D~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSL-------DGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred EecccCCCcEeeccc-------ccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 9999 7899999998 9999999998765442222 2257999999999999999999999999999876544
Q ss_pred ccceeE----eecccccCcEEEEEccC-CCEEEEecCCCcEEEEecCCceeeEeeeccCC--ceeEEEEcCCCCCEEEEe
Q 013475 360 DKFKRY----ESHGVSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ--ACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 360 ~~~~~~----~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~ 432 (442)
...... +...+ ..|+.+.|.|. -..+++.+.|..|+|||.++.+++..|+++.. .-....|+.|| ++|+++
T Consensus 487 ~~~~I~~~~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~ 564 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-KHIVSA 564 (712)
T ss_pred EeeeEeeccCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-CEEEEe
Confidence 222111 11112 36999999983 44677888999999999998899999998643 33456899998 899999
Q ss_pred eCCCcEEEcC
Q 013475 433 SWNGDVSVYE 442 (442)
Q Consensus 433 ~~dg~i~iwd 442 (442)
++|..|+||+
T Consensus 565 seDs~VYiW~ 574 (712)
T KOG0283|consen 565 SEDSWVYIWK 574 (712)
T ss_pred ecCceEEEEe
Confidence 9999999995
No 86
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.8e-29 Score=232.85 Aligned_cols=240 Identities=13% Similarity=0.186 Sum_probs=185.0
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc------ceeeeeccCCCceeEEEeCCCCCE-EEEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ------KLARVLNFHSAAVNDVKWSQQGLF-VLSC 208 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~-l~s~ 208 (442)
..+..+.+|.+.|.+++|+|+++++|++|+.||+|+|||+.+... .....+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 456788999999999999997678999999999999999965321 234467889999999999998875 5688
Q ss_pred ecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEE-----Ee
Q 013475 209 GYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVE-----FT 283 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~-----~~ 283 (442)
+.|++|+|||+.+++....+.+...|.+++|+++| .+|++++.|+.|+|||+++++.+.++.+|.+.+.... |+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 99999999999999988888888889999999996 8899999999999999999999999999987654333 45
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCC-Ccccceeeccccc-eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVEAY-TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
+++.+|++++.. ...+++|+|||++. ...+......... .+......+++.++++|+.|+.|++|++.... +
T Consensus 224 ~d~~~IlTtG~d---~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~-- 297 (568)
T PTZ00420 224 GDDNYILSTGFS---KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-I-- 297 (568)
T ss_pred CCCCEEEEEEcC---CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-E--
Confidence 788898887750 00124799999996 4444433332222 22333345568889999999999999997653 2
Q ss_pred ceeEeecccccCcEEEEEccCC
Q 013475 362 FKRYESHGVSGFPIKCSFSLDG 383 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g 383 (442)
..+...........++|.|+.
T Consensus 298 -~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 -RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred -EeecccccCCCccceEEcccc
Confidence 223333344556788898864
No 87
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=2.1e-29 Score=203.67 Aligned_cols=291 Identities=19% Similarity=0.258 Sum_probs=231.3
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc----------e---eeeeccCCCceeEEEeCC-CCCEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK----------L---ARVLNFHSAAVNDVKWSQ-QGLFVLS 207 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~---~~~~~~h~~~v~~l~~~~-~~~~l~s 207 (442)
..|.+.|+++...+..|+|+++|+.||.|.|||+++.... + ...-.+|...|..+.|.| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999999998999999999999999999654311 1 112246888999999999 6778889
Q ss_pred EecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCC--CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC
Q 013475 208 CGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPEN--SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
++.|.+++|||.++.+....|+.++.|..-+++|-. ..++++|..+-.|++.|+.+|...+.+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999999999999999999999998853 257788888889999999999999999999999999999998
Q ss_pred CCEE-EeccCCCCCcCCCCeEEEEeCCCCc-cc-------------ceeeccccceeeeEEecCCCCeeEEEeCCCeEEE
Q 013475 286 GKQF-VSSSDVSGSNMSENSIVVWDVSREV-PL-------------SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAI 350 (442)
Q Consensus 286 ~~~l-~~~~~~~~~~~~d~~i~iwd~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 350 (442)
..++ ++++. ||.|++||++... +. .+....+.+.+..++|..++.++++++.|..+++
T Consensus 200 ~e~vLatgsa-------Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 200 SEWVLATGSA-------DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred ceeEEEecCC-------CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 7765 56666 9999999998641 11 1122345678899999999999999999999999
Q ss_pred eeCCCCccccc-ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 351 FSSTPPFRLDK-FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 351 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
|+...+..... +...........-..+. +-+...++.--.++.+.++++-.++.+..+..|...|.+.++.|+- +..
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f-q~~ 350 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF-EQC 350 (397)
T ss_pred eecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCch-hhh
Confidence 99987654321 11111111011111122 3344444444456889999999999999999999999999999998 689
Q ss_pred EEeeCCCcEEEc
Q 013475 430 GSCSWNGDVSVY 441 (442)
Q Consensus 430 ~s~~~dg~i~iw 441 (442)
.++..|+.|..|
T Consensus 351 ~tg~~d~ni~~w 362 (397)
T KOG4283|consen 351 FTGDMNGNIYMW 362 (397)
T ss_pred hccccCCccccc
Confidence 999999999988
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6e-30 Score=202.51 Aligned_cols=238 Identities=21% Similarity=0.319 Sum_probs=194.8
Q ss_pred EEEEeeCCCCCEEEEec-------CCCcEEEEEcccC-CcceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEEEC
Q 013475 149 NSINWSPTHAHLLASAG-------MDQSICIWNVWSR-DQKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~-------~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~ 219 (442)
+++.|||--.++||.+. ..|++.|-++... .......+. -...+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 67889996445555442 4689999998532 223333444 5688999999994 577888999999999996
Q ss_pred CC-CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCEEEeccCCC
Q 013475 220 EK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVS 296 (442)
Q Consensus 220 ~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~ 296 (442)
.. ..++..++ |+..|.++.|++.....+++++.|++|++|+....+.+.++.+|..-|....|+| ..+.|++++.
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg-- 168 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG-- 168 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC--
Confidence 53 35677777 9999999999998878899999999999999999999999999999999999999 5788999998
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
|+++++||++....... +. .|...+.+
T Consensus 169 -----d~~l~lwdvr~~gk~~~----------------------------------------------i~--ah~~Eil~ 195 (311)
T KOG0277|consen 169 -----DGTLRLWDVRSPGKFMS----------------------------------------------IE--AHNSEILC 195 (311)
T ss_pred -----CceEEEEEecCCCceeE----------------------------------------------EE--eccceeEe
Confidence 99999999986432111 11 22245788
Q ss_pred EEEcc-CCCEEEEecCCCcEEEEecCCc-eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSL-DGEKLVSGSSDGSIYFYNCRSS-ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~-~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|+. +.+.|++|+.|+.|++||+++- .++.++.+|.-.|..++|||....+|++++.|-+++|||
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 88888 6788999999999999999874 568889999999999999999888999999999999997
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=7.2e-30 Score=218.18 Aligned_cols=247 Identities=21% Similarity=0.297 Sum_probs=202.1
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc--------eeeeeccCCCceeEEEeCC-CCCEEEEEecCC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK--------LARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDC 212 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~ 212 (442)
-.|.+.|+.+++-|++..++|+++..+.|.|||....... +...+.+|.+.-++|+|++ ..-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4599999999999998899999999999999998543322 2337888999889999999 455799999999
Q ss_pred cEEEEECCCCcE-------EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC--CCceEEEeccCCCCEeEEEE
Q 013475 213 SSRLVDVEKGIE-------TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR--TGKVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 213 ~v~vwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~ 282 (442)
+|++||+..... ...+. |...|..++|++....+|.+++.|+.+.|||+| +.+......+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999976432 23344 899999999999988999999999999999999 55666778899999999999
Q ss_pred ee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 283 TI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 283 ~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
+| ++..|++++. |++|.+||+|+-....
T Consensus 281 np~~~~ilAT~S~-------D~tV~LwDlRnL~~~l-------------------------------------------- 309 (422)
T KOG0264|consen 281 NPFNEFILATGSA-------DKTVALWDLRNLNKPL-------------------------------------------- 309 (422)
T ss_pred CCCCCceEEeccC-------CCcEEEeechhcccCc--------------------------------------------
Confidence 99 4566778887 9999999999854321
Q ss_pred ceeEeecccccCcEEEEEccC-CCEEEEecCCCcEEEEecCCc--------------eeeEeeeccCCceeEEEEcCCCC
Q 013475 362 FKRYESHGVSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCRSS--------------ELERKIKAYEQACIDVAFHPILP 426 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~p~~~ 426 (442)
..+. .|...|.++.|||+ ...|++++.|+.+.|||+..- +++..-.||...|..+.|+|+.+
T Consensus 310 -h~~e--~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 310 -HTFE--GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred -eecc--CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC
Confidence 2223 33366888889884 467888889999999998641 23344468999999999999999
Q ss_pred CEEEEeeCCCcEEEcC
Q 013475 427 NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 427 ~~l~s~~~dg~i~iwd 442 (442)
..|+|.+.|+.+.||+
T Consensus 387 W~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQ 402 (422)
T ss_pred eEEEEecCCceEEEee
Confidence 9999999999999995
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.3e-29 Score=202.62 Aligned_cols=292 Identities=14% Similarity=0.204 Sum_probs=219.0
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec--cCCCceeEEEeCCCCCEEEEE-ecCCc
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN--FHSAAVNDVKWSQQGLFVLSC-GYDCS 213 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~-~~d~~ 213 (442)
.+..|++|.+.|++++|+.| |++|+|++.|++|+||++++-..+..+.+. -.-+.-+.+.|.||-+-++.. -...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 45688999999999999999 999999999999999998654332222221 112356789999987665544 44668
Q ss_pred EEEEECCCCc---EEE--------eee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEE
Q 013475 214 SRLVDVEKGI---ETQ--------SFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 214 v~vwd~~~~~---~~~--------~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 280 (442)
+++|.+...+ ... .|. |.-.+..+-.... ..+|++++.|..|.+|+++ |+.+..+......-...
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 9999875432 111 111 3444555555554 5899999999999999998 89998888777777888
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-----ccc--eeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeC
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-----PLS--KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~ 353 (442)
+.+|+|+++++++. .-.|++|.+--.+ .+. .....|...+..++|+++...+++.+.||.+++||.
T Consensus 235 avSP~GRFia~~gF-------TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGF-------TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred eeCCCCcEEEEecC-------CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 99999999999998 8899999874321 111 123467778999999999999999999999999998
Q ss_pred CCCcccc----cceeE--eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee-ccCCceeEEEEcCCCC
Q 013475 354 TPPFRLD----KFKRY--ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK-AYEQACIDVAFHPILP 426 (442)
Q Consensus 354 ~~~~~~~----~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 426 (442)
+-..... .++.. ..+...+....+.++|+|+.|+.... ..|++|..++++...++. .|+..|.+++|+++|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g- 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG- 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC-
Confidence 7543321 11211 22334455679999999999988653 469999999988776664 689999999999999
Q ss_pred CEEEEeeCCCcEEEc
Q 013475 427 NIIGSCSWNGDVSVY 441 (442)
Q Consensus 427 ~~l~s~~~dg~i~iw 441 (442)
++++||| |..+++.
T Consensus 386 ~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVI 399 (420)
T ss_pred cEEeeec-ceeeeee
Confidence 7999997 6677664
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-30 Score=228.89 Aligned_cols=284 Identities=19% Similarity=0.257 Sum_probs=235.1
Q ss_pred ccccceE---EEEeeCCCCCEEEEecCCCcEEEEEcccCCcc----eeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 143 HHTKAVN---SINWSPTHAHLLASAGMDQSICIWNVWSRDQK----LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 143 ~h~~~V~---~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.|...|. .+..+..+++||+||+.||.|++|++...... ....++.|...|+.+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555666 66677767889999999999999998654332 4667888999999999999999999999999999
Q ss_pred EEECCCC--cEEEeee-CCcceEEEEE-ccCCCCEEEEeeCCCcEEEEECCCC--ceEE--------Eec-cCCCCEeEE
Q 013475 216 LVDVEKG--IETQSFR-EELAVRVVKF-HPENSNLFLSGGSKGLLRLWDIRTG--KVAH--------EYI-QSLGPILDV 280 (442)
Q Consensus 216 vwd~~~~--~~~~~~~-~~~~v~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~--------~~~-~~~~~i~~~ 280 (442)
+|+...+ -+..++. |...|.|+++ .++ ..++++||.|+.|++||++++ +.+. .+. ++...|.++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 9999887 5667776 9999999999 555 589999999999999999977 2222 223 677899999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD 360 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 360 (442)
+.++.|..|++|+. ++.|++||.++.+.+..+. .|...|..+..+.+|..+++++.|++|++||+....++
T Consensus 178 A~N~t~t~ivsGgt-------ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl- 248 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGT-------EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL- 248 (735)
T ss_pred ecCCcceEEEecCc-------ccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccccee-
Confidence 99999999999998 9999999999998887777 78889999999999999999999999999999987766
Q ss_pred cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 361 KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 361 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.++..|. ..++++..+++-.++++|+.||.|+.=|+.+......+-....+|..+..+.+. +-+-+++.|+.|+-
T Consensus 249 --~T~~vH~--e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 249 --ATYIVHK--EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKR 323 (735)
T ss_pred --eeEEecc--CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc-CCceeeecccccee
Confidence 4455454 448899999999999999999999999998854333333346678888777655 34466677888887
Q ss_pred c
Q 013475 441 Y 441 (442)
Q Consensus 441 w 441 (442)
|
T Consensus 324 W 324 (735)
T KOG0308|consen 324 W 324 (735)
T ss_pred c
Confidence 7
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=205.54 Aligned_cols=291 Identities=13% Similarity=0.197 Sum_probs=240.7
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
..++++.|.||++.|+.++.... ..++.+++.|.+-+||.+++ ..++..+.+|.+.|++++|++.+.++++++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Es--g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSLES--GACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcC-CcceeecccccceeEEeecc--ccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 45678889999999999999887 77999999999999999955 5899999999999999999999999999999999
Q ss_pred EEEEEC------CCC----------------------------------cEEEeee-CCcceEEEEEccCCCCEEEEeeC
Q 013475 214 SRLVDV------EKG----------------------------------IETQSFR-EELAVRVVKFHPENSNLFLSGGS 252 (442)
Q Consensus 214 v~vwd~------~~~----------------------------------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~ 252 (442)
..||.. ... .++..+. |...|.+..|...| ..+++++.
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeec
Confidence 999972 110 0122333 66778888888765 88999999
Q ss_pred CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEe
Q 013475 253 KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRH 332 (442)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 332 (442)
|.+..+||+++++.+..+.+|....+.++-+|..+++++.+. |.+.++||++....-......|...++++.|
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-------DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-------DTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-------CceeEeccchhhcceeeeecccccceeEEEE
Confidence 999999999999999999999999999999999999999998 9999999999655555556677788999888
Q ss_pred cCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee---
Q 013475 333 HPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI--- 409 (442)
Q Consensus 333 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~--- 409 (442)
.-+ ..+++|+.|.+|++||+++.... +.+. .....+..++.+..+..|+.--.+..|++||+.... +..+
T Consensus 366 ~~d-d~vVSgSDDrTvKvWdLrNMRsp--lATI---RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrt 438 (481)
T KOG0300|consen 366 NTD-DRVVSGSDDRTVKVWDLRNMRSP--LATI---RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRT 438 (481)
T ss_pred ecC-CceeecCCCceEEEeeeccccCc--ceee---ecCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcc
Confidence 765 46889999999999999875432 1222 223557889999989999999999999999987543 3333
Q ss_pred --eccCCceeEEEEcCCCC-CEEEEeeCCCcEEEcC
Q 013475 410 --KAYEQACIDVAFHPILP-NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 410 --~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd 442 (442)
++|..-|+|++|..+.+ .-|++||.|..+.=|+
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred cccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 58899999999986543 3578999999988774
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=199.34 Aligned_cols=250 Identities=19% Similarity=0.264 Sum_probs=207.0
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-ceeeeeccCCCceeEEEeCC--CCCEEEEEecCCcEEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-KLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~v~vwd 218 (442)
..|++.|.++...-- |+.|||++.|++|+|+.+++... +++.++.+|.++|..++|.. -|.+|+++++||.|.||.
T Consensus 8 t~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 579999999988888 99999999999999999987765 78899999999999999976 799999999999999999
Q ss_pred CCCCcEEEeee---CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCC-c--eEEEeccCCCCEeEEEEeeC---C--
Q 013475 219 VEKGIETQSFR---EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTG-K--VAHEYIQSLGPILDVEFTIN---G-- 286 (442)
Q Consensus 219 ~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~~~i~~~~~~~~---~-- 286 (442)
-++++-.+... |...|++++|.|.+ +-+|++++.||.|.|++.+.. . .......|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 99885544444 88999999999875 356888999999999998764 1 23445678889999999886 4
Q ss_pred ---------CEEEeccCCCCCcCCCCeEEEEeCCCCccc-ceeeccccceeeeEEecCCC----CeeEEEeCCCeEEEee
Q 013475 287 ---------KQFVSSSDVSGSNMSENSIVVWDVSREVPL-SKQVYVEAYTCPCVRHHPFD----PYFVAQSNGNYIAIFS 352 (442)
Q Consensus 287 ---------~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~i~i~~ 352 (442)
+.|++++. |+.|+||+.....-+ ......|..-++.++|.|.- .+|++++.|+++.||.
T Consensus 167 ~~~~~~~~~krlvSgGc-------Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGC-------DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccCcccccceeeccCC-------ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56899998 999999999886432 23356777889999999975 4789999999999999
Q ss_pred CCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 353 STPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
.+......+...++ .....+.++.||..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tll~--~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLE--EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccc--cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 88554444333333 345678899999999999999999999999743
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.5e-29 Score=212.44 Aligned_cols=285 Identities=16% Similarity=0.272 Sum_probs=240.5
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCC-EEEEEecCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL-FVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~~~ 223 (442)
.+.|++|.|+|. ..+|++++.||+++||.++......++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 578999999999 9999999999999999998777777777777788999999999998 88999999999999999887
Q ss_pred EEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 224 ETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 224 ~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
..+.-. ....+.....++++ ++|+..+..|.|.+....+++.+..++-. +.|..++|+.+++.|++++.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~----- 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGG----- 364 (514)
T ss_pred cccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcC-----
Confidence 654433 23457778889996 89999999999999999999998888754 78999999999999998887
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc---ccceeEeecccccCcEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL---DKFKRYESHGVSGFPIK 376 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~~~~~~v~~ 376 (442)
+|.|.+||++...++.+........-++++.+.++.+|++|+..|.|.|||.++...- ..++.+. .....|+.
T Consensus 365 --~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~Its 440 (514)
T KOG2055|consen 365 --TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAITS 440 (514)
T ss_pred --CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheeeee
Confidence 9999999999998888888877777888999999999999999999999997654322 1112221 22355889
Q ss_pred EEEccCCCEEEEecC--CCcEEEEecCCceeeEeeecc---CCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSLDGEKLVSGSS--DGSIYFYNCRSSELERKIKAY---EQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.|++|..+||.++. +..+++-.+.+......+... -+.|+|++|+|.+ -+|+.|..+|.+.+|.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEe
Confidence 999999999998875 667999998887777666543 3578999999998 5999999999999993
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.9e-30 Score=214.74 Aligned_cols=246 Identities=19% Similarity=0.245 Sum_probs=215.5
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
..+.+|.|-.+.|+.+.|.++ ++.+++++.|+.+++|++ ....+..++.+|++.|+++.|......+++|+.|.+|+
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnv--d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNV--DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred hhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeec--cchhhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 367889999999999999999 888999999999999999 55689999999999999999998777799999999999
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
+||+.+..|.+++-....+..++.+ ...+++|-.|+.|++||.++.........+ +.|+++..+.++..+++++.
T Consensus 287 ~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssR- 361 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSR- 361 (459)
T ss_pred hhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecC-
Confidence 9999999999988888888888887 267899999999999999999998888777 59999999999999999998
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeec---cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccccc
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVY---VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSG 372 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
|.++.++|+++......... ......+.+.|+|++.|+++|+.||.|+||++.++..... +.......
T Consensus 362 ------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~---l~~s~s~~ 432 (459)
T KOG0288|consen 362 ------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV---LSLSTSNA 432 (459)
T ss_pred ------CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE---eccCCCCc
Confidence 99999999999775544332 2344578899999999999999999999999998876533 33333334
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEE
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFY 398 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iw 398 (442)
.|++++|++.|.+|++++.++.+.+|
T Consensus 433 aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 433 AITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceEEEEEcCCCchhhcccCCcceEec
Confidence 69999999999999999999999999
No 96
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9.7e-29 Score=229.42 Aligned_cols=254 Identities=20% Similarity=0.311 Sum_probs=213.2
Q ss_pred CCcceec-ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 134 PGRLSTA-LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 134 ~~~~~~~-l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
.+..+.. |.||.+.|.+++|..- +.+|++|+.|.+++|||. ....+...+.+|.+.|.++... ..++++|+.|.
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~--~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~ 311 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDC--STGECTHSLQGHTSSVRCLTID--PFLLVSGSRDN 311 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEec--CCCcEEEEecCCCceEEEEEcc--CceEeeccCCc
Confidence 4555566 9999999999999984 889999999999999998 4559999999999999999874 45788899999
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
+|++|+++++.++..+. |...|.++.++ ..++++|+.|++|++||..++++++.+.+|...|.++.+... ..+++
T Consensus 312 tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S 387 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS 387 (537)
T ss_pred eEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe
Confidence 99999999999999999 99999999998 379999999999999999999999999999999999987654 89999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCC-cccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc
Q 013475 292 SSDVSGSNMSENSIVVWDVSRE-VPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
|+. |++|++||+++. +++..... +...+ -.....++++++++.|+.|++||...+.....+. +. +
T Consensus 388 gs~-------D~~IkvWdl~~~~~c~~tl~~-h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~---~~-~ 453 (537)
T KOG0274|consen 388 GSL-------DTTIKVWDLRTKRKCIHTLQG-HTSLV--SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLE---GR-H 453 (537)
T ss_pred eee-------ccceEeecCCchhhhhhhhcC-Ccccc--cccccccceeEeccccccEEEeecccCceeeeec---cC-C
Confidence 998 999999999998 55544433 32233 3344567899999999999999999887764433 32 3
Q ss_pred ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY 412 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 412 (442)
...+..+++. ...+++++.||.+++||++++++...+-.+
T Consensus 454 ~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 454 VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 3456666655 468889999999999999999988876433
No 97
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.5e-29 Score=206.44 Aligned_cols=263 Identities=19% Similarity=0.322 Sum_probs=215.4
Q ss_pred CccCccccccCCcceecccccccceEEEEeeCCC--CCEEEEecCCCcEEEEEcccCCcce--eeeeccCCCceeEEEeC
Q 013475 124 PKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTH--AHLLASAGMDQSICIWNVWSRDQKL--ARVLNFHSAAVNDVKWS 199 (442)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~~ 199 (442)
-++-.+.|...++..+++.||.++|.+++|.-.+ ...|++++.|.++++|.++.+.... +....||...|-+++..
T Consensus 123 YDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred cCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence 3444556677899999999999999998885541 2369999999999999997665433 33344999999999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCC-------------------------cEEEeee-CCcceEEEEEccCCCCEEEEeeCC
Q 013475 200 QQGLFVLSCGYDCSSRLVDVEKG-------------------------IETQSFR-EELAVRVVKFHPENSNLFLSGGSK 253 (442)
Q Consensus 200 ~~~~~l~s~~~d~~v~vwd~~~~-------------------------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 253 (442)
+++..+++|+.|..|+||+..+. ..+..+. |...|.++.|++. ..+++++.|
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwD 280 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWD 280 (423)
T ss_pred CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeeccc
Confidence 99999999999999999993221 1233444 8889999999984 689999999
Q ss_pred CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC--cccceeeccccceeeeEE
Q 013475 254 GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE--VPLSKQVYVEAYTCPCVR 331 (442)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 331 (442)
.+|+.||+.++..+.++... ..+.++.+++..++|++|+. |..|++||.+++ ..+......|...+..+.
T Consensus 281 HTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss-------dr~irl~DPR~~~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS-------DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred ceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC-------CCceeecCCCCCCCceeEEeeecchhhhhhee
Confidence 99999999999988887765 67899999999999999998 999999999884 455666677888999999
Q ss_pred ecCCCCe-eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 332 HHPFDPY-FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 332 ~~~~~~~-l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
|+|...+ |++++.|+++++||++.... ..+..+.|...|.++.|+ ++.+|++|+.|++|+|+...
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~----plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKA----PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCC----cceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9998775 55699999999999998652 223344556889999997 56699999999999998743
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-29 Score=221.49 Aligned_cols=246 Identities=19% Similarity=0.311 Sum_probs=210.2
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc-CCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-HSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
...-++..|+++.|+++ |.+|++|..+|.|.|||. .+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|
T Consensus 212 l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~--~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDV--KEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD 286 (484)
T ss_pred eEecCCCceEEEEECCC-CCEEEEeecCCeEEEEeh--hhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence 33344899999999999 999999999999999999 44566777777 99999999997 66899999999999999
Q ss_pred CCCCcEEEe-ee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCEEEeccCC
Q 013475 219 VEKGIETQS-FR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSDV 295 (442)
Q Consensus 219 ~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~ 295 (442)
++..+.... +. |...|..+.|++++ .++++|+.|+.+.|||....+++..+..|...|..++|+| ....|++|+.
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG- 364 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG- 364 (484)
T ss_pred EecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC-
Confidence 998766555 55 89999999999996 9999999999999999988889999999999999999999 4566777664
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE--EeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA--QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
..|+.|++||..++..+..+. ....|.++.|++..+.|++ |..++.|.||+..+.... ..+.+| ...
T Consensus 365 ----s~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~~l~gH--~~R 433 (484)
T KOG0305|consen 365 ----SADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---AELLGH--TSR 433 (484)
T ss_pred ----CcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---eeecCC--cce
Confidence 349999999999887765543 4567999999999987777 677889999999874433 444444 466
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
|..++++|||..|++|+.|.++++|++-..
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999998764
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=211.99 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=206.8
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE---EEeee-CCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE---TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
...+.+..|+..|.-+.|+++|++||+++.|.+..+|++..... .+++. |..+|..+.|+||+ +++++|+.|..+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~ 293 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVL 293 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHhe
Confidence 34556778999999999999999999999999999999876544 33333 88999999999995 888999999999
Q ss_pred EEEECCCCceEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC
Q 013475 257 RLWDIRTGKVAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF 335 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (442)
.+||..+|...+.+.. +...+.+++|.|||..+++|+. |+++..||+... ............+.+++..+|
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~-------dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP-------DRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC-------CCcEEEecCCcc-hhhcccccccceeEEEEEcCC
Confidence 9999999988777754 3568999999999999999998 999999999754 344444445567899999999
Q ss_pred CCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC-
Q 013475 336 DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ- 414 (442)
Q Consensus 336 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~- 414 (442)
|+++++.+.|..|++|+.+.......+ .....++++++|.||+++++.-.+..|++||++..+.+..+.||..
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~li------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLI------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG 439 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhccc------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence 999999999999999998876543211 2235589999999999999999999999999999899999999854
Q ss_pred -ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 415 -ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 415 -~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+..-+|-.....++++|++|+.|+||+
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 4555567655447999999999999996
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.5e-28 Score=220.24 Aligned_cols=279 Identities=15% Similarity=0.182 Sum_probs=233.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeE-EEeCC-CCCEEEEEecCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVND-VKWSQ-QGLFVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~~~-~~~~l~s~~~d~ 212 (442)
.++.+.+.||...|..+++.+. -.+++++.||++++|+-..+.......+.+|.+-|.+ ++|-+ ++-.|++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4677899999999999998765 4789999999999999765555555677778888877 88876 555699999999
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
+|.+|...+...+..++ |+..|.++....++ . +++|+.|.++++|-. +++...+.+|...|..+...|++ .+++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEe
Confidence 99999999999999988 99999999988775 3 899999999999964 56777799999999999999988 7888
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
|+. |.+|++|.- ++.+..+. .|...++.+++-+++ .|+++++||.|+.|++.+. ..++.++|.
T Consensus 157 gsa-------DKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge------~l~~~~ght 219 (745)
T KOG0301|consen 157 GSA-------DKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE------VLLEMHGHT 219 (745)
T ss_pred ccC-------cceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccCc------eeeeeeccc
Confidence 888 999999986 33444443 477788888887754 5788899999999999654 334455667
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.++.++....++..|+++++|++++||+.. ++.+.+.-....|+++.+-++| -+++|+.||.||||
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG--DIVVGGSDGRVRVF 285 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC--CEEEeccCceEEEE
Confidence 889999988889999999999999999976 7888887556689999999998 47888889999998
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.6e-29 Score=234.13 Aligned_cols=259 Identities=19% Similarity=0.281 Sum_probs=213.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc----------------CCcceeeeeccCCCceeEEEe
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS----------------RDQKLARVLNFHSAAVNDVKW 198 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~h~~~v~~l~~ 198 (442)
.+.+.+...|.+.|+|+.|++| |++||+|+.|+.|.||+... +..+....+.+|...|..++|
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred chhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 5677888899999999999999 99999999999999999752 112467788899999999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC---
Q 013475 199 SQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL--- 274 (442)
Q Consensus 199 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 274 (442)
+|++.+|++++.|++|.|||..+.+.+..++ |.+.|..+.|.|-| ++|++-+.|++|++|++.+....+.+..+.
T Consensus 138 sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 138 SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred CCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 9999999999999999999999999999988 99999999999997 999999999999999987766766665543
Q ss_pred ---CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC-----CC---------
Q 013475 275 ---GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF-----DP--------- 337 (442)
Q Consensus 275 ---~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------- 337 (442)
..+..+.|+|||++|++..... ..-..+.|.+-.+-+.- .....|..++.++.|+|. .+
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n---~~~~~~~IieR~tWk~~-~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVN---GGKSTIAIIERGTWKVD-KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred CCcceeeecccCCCcCeecchhhcc---CCcceeEEEecCCceee-eeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 3578899999999999986532 22457778777554433 344466669999999872 11
Q ss_pred ---eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 338 ---YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 338 ---~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
.+++|+.|+.|.||.......+.....+.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~----~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN----KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhc----CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 466799999999999876665544443333 44899999999999999999999999998754
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.5e-28 Score=222.71 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=226.6
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
.+|+..-+.|+|.++ |++|++++.||.|++|+.......+. ++.-+...|.+++.. +.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 479999999999999 88999999999999999755422222 222277888888774 45999999999999999999
Q ss_pred CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 222 GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 222 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
++.-..+. ..-++.+++|+-+| .+++.|+.|-.|++.++.+......+.+|.++|.++.|+|++++|++.+.
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~------ 158 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC------ 158 (933)
T ss_pred CCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec------
Confidence 87664444 67889999999986 89999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEEeCCCCcccceeec-------cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 301 SENSIVVWDVSREVPLSKQVY-------VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
||.|++||+.++.....+.. .....+..++|+|++..+++...++.|.+|+..+...... +....+...
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~~~~ss~ 234 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRDKLSSSK 234 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---ecccccccc
Confidence 99999999998766554332 1244677899999999999999999999999988766533 333333444
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
+..+.|+|+|+|||+++.||.|.|||+++-+. ......|.+++|.|+.+ .+-.-..-|...+
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGTLGV 296 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeecccccc
Confidence 88999999999999999999999999987221 23357899999999984 4443334444433
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6.4e-29 Score=223.18 Aligned_cols=293 Identities=17% Similarity=0.207 Sum_probs=235.2
Q ss_pred cccccccceEEEEeeCCC----------CCEEEEecCCCcEEEEEcccCCccee-----------ee-------------
Q 013475 140 ALCHHTKAVNSINWSPTH----------AHLLASAGMDQSICIWNVWSRDQKLA-----------RV------------- 185 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~----------~~~l~s~~~dg~i~iwd~~~~~~~~~-----------~~------------- 185 (442)
.+-.|...|+.+.--|-+ ...+.|++.|++|++|++.......+ +.
T Consensus 364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 444688888888876621 23588999999999999854211100 00
Q ss_pred -----------eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccC--CCCEEEEee
Q 013475 186 -----------LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPE--NSNLFLSGG 251 (442)
Q Consensus 186 -----------~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~l~~~~ 251 (442)
.-+....+.+++.+|++++|++|..-|+++||++.+.+....++ |+..|.|+.|+.. +.++|++++
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 00123568999999999999999999999999999988887777 9999999999753 347899999
Q ss_pred CCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCC--CEEEeccCCCCCcCCCCeEEEEeCCCCccc----ceeecccc
Q 013475 252 SKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTING--KQFVSSSDVSGSNMSENSIVVWDVSREVPL----SKQVYVEA 324 (442)
Q Consensus 252 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~ 324 (442)
.|..|++||.... .+++++.+|...|+++.|--+| ..+++++. |+.|.+--.+..... ........
T Consensus 524 rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA-------DksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA-------DKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC-------chhhheehhccccCceecccccccccc
Confidence 9999999998644 5678899999999999998877 67778776 777655433321111 11222334
Q ss_pred ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 325 YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
..+..+...|..+++++++.|+.|+||++..+.....++.-. .+.+....+...|.|.||++.+.|.++.|+|+.+|+
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~--~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR--DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc--cCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 578889999999999999999999999999998775544433 344778899999999999999999999999999999
Q ss_pred eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 405 LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++.++.+|...|+.+.|.+|- +.|++.+.||.|.||.
T Consensus 675 cvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 675 CVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhhhhcCcchheeeeeecccc-hhheeecCCceEEEEE
Confidence 999999999999999999999 7999999999999994
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-27 Score=190.19 Aligned_cols=240 Identities=20% Similarity=0.310 Sum_probs=203.7
Q ss_pred eeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 185 VLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 185 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
.+++|+.+++.+.|+.+|.+|++|+.|.+..||-..+|+.+.++. |.+.|+|+..+-+ ...+++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCC
Confidence 467899999999999999999999999999999999999999999 9999999999988 58999999999999999999
Q ss_pred CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC-------cccceeeccccceeeeEEecCCC
Q 013475 264 GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE-------VPLSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 336 (442)
|+++..++.. .+|..+.|+.+|++++.+.+ ......+.|.++|++.. .+...+. .....++.+.|.|.+
T Consensus 84 Gk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD--~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 84 GKQLATWKTN-SPVKRVDFSFGGNLILASTD--KQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLG 159 (327)
T ss_pred CcEEEEeecC-CeeEEEeeccCCcEEEEEeh--hhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccC
Confidence 9999988755 78999999999999988775 22223678999999842 3333333 334689999999999
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCce
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQAC 416 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v 416 (442)
++|++|..+|.|.+||.+++....... ..|...|+.+++++|..++++++.|.+-++||+.+.++++++.. ..+|
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~----~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~Pv 234 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSD----EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPV 234 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeech----hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccc
Confidence 999999999999999999876543222 23345799999999999999999999999999999999999885 7899
Q ss_pred eEEEEcCCCCCEEEEeeC
Q 013475 417 IDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 417 ~~~~~~p~~~~~l~s~~~ 434 (442)
++.+++|.....+..|+.
T Consensus 235 N~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQ 252 (327)
T ss_pred cceecccccceEEecCCc
Confidence 999999987434444443
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=200.55 Aligned_cols=253 Identities=19% Similarity=0.263 Sum_probs=207.7
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce-eeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL-ARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
..++++|-.|.+.|+++.|+|. ..+|++|+.|++|++||+.....+. .+.+. ...+|.++.|+|.|.+|+.|....+
T Consensus 162 hPvIRTlYDH~devn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred CceEeehhhccCcccceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCc
Confidence 3678999999999999999999 9999999999999999995443322 23333 6789999999999999999999999
Q ss_pred EEEEECCCCcEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec-cCC-CCEeEEEEeeCCC
Q 013475 214 SRLVDVEKGIETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI-QSL-GPILDVEFTINGK 287 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~~~~~~~~~ 287 (442)
+++||+++.++...-. |.+.|+++.+++.+ ++.++++.||.|++||--+++++.++. .|. ..|.+..|..+|+
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 9999999988876543 78899999999996 899999999999999998999988874 343 4799999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc----ceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCcccccc
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA----YTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPFRLDKF 362 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~ 362 (442)
++++.+. |..+++|.+.++..+........ .--+...|+....+++.- -..+.+.-||.++..+...
T Consensus 319 yiLsSG~-------DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l- 390 (430)
T KOG0640|consen 319 YILSSGK-------DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL- 390 (430)
T ss_pred EEeecCC-------cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh-
Confidence 9999998 99999999999988776554321 112234456666666653 3457899999988766433
Q ss_pred eeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 363 KRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 363 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
...+|.+.+..+.-||.+.-+++|+.|..+++|--+
T Consensus 391 ---~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 391 ---LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ---cccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 234667889999999999999999999999999643
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=193.88 Aligned_cols=238 Identities=16% Similarity=0.236 Sum_probs=191.2
Q ss_pred cCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCC-CcEEEe--eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 188 FHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEK-GIETQS--FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 188 ~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
..+..|.+|+||| ...++++++.||+||+|+++. |...-+ ..+.++|.+++|+.+| ..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC
Confidence 3568899999999 556666889999999999987 344332 2389999999999997 8889999999999999999
Q ss_pred CceEEEeccCCCCEeEEEEeeCCC--EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE
Q 013475 264 GKVAHEYIQSLGPILDVEFTINGK--QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (442)
+ .+..+..|.++|..+.|-+... .|++|+. |++|++||.+...++.++...+.. .+..-...++++
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW-------DKTlKfWD~R~~~pv~t~~LPeRv----Ya~Dv~~pm~vV 171 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSW-------DKTLKFWDTRSSNPVATLQLPERV----YAADVLYPMAVV 171 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEeccc-------ccceeecccCCCCeeeeeecccee----eehhccCceeEE
Confidence 8 4567788999999999987665 8999998 999999999998888877766542 233334678899
Q ss_pred EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc--eeeEeeeccCC-----
Q 013475 342 QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS--ELERKIKAYEQ----- 414 (442)
Q Consensus 342 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~----- 414 (442)
+..++.|.+|++++.....+.. .....-.+.+++...|....+.|+-+|.+.|..++.+ +.-..|+.|..
T Consensus 172 ata~r~i~vynL~n~~te~k~~---~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRI---ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhh---cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 9999999999997654332111 1112234678888888888899999999999999876 44456677752
Q ss_pred ----ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 415 ----ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 415 ----~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|++|+|+|.. ..|+|+|.||++.+||
T Consensus 249 ~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWD 279 (347)
T ss_pred CceEEecceEeeccc-ceEEEecCCceEEEec
Confidence 57889999988 6999999999999998
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=221.50 Aligned_cols=281 Identities=19% Similarity=0.298 Sum_probs=225.2
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc--eeeeeccC---CCceeEEEeCC-CCCEEEEEecCCcEEEEEC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK--LARVLNFH---SAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~h---~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~ 219 (442)
....+|..+++ -..++.++. ..++||.+...... +...++.. ...+..+.|+. +.++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 44567778888 556666664 47888887543322 22222211 12456778876 5789999999999999999
Q ss_pred CC---CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCEEEeccC
Q 013475 220 EK---GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSD 294 (442)
Q Consensus 220 ~~---~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 294 (442)
.. .+.+..|. |...++++.|++...++|++|+.||.|++||++..+...++.+....|+++.|+| .+.+|+++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 88 55556666 9999999999999999999999999999999999988888888889999999998 5788999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
.|.+.+||++...........|.+.+.|+.|+|++.+|++|+.|+.|+||+..+........ . .....+
T Consensus 198 -------sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-I---nTiapv 266 (839)
T KOG0269|consen 198 -------SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-I---NTIAPV 266 (839)
T ss_pred -------CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-E---eeccee
Confidence 99999999999888888888999999999999999999999999999999999754432211 1 223557
Q ss_pred EEEEEccCCCE-EEEec--CCCcEEEEecCCc-eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 375 IKCSFSLDGEK-LVSGS--SDGSIYFYNCRSS-ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 375 ~~~~~s~~g~~-l~~g~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
.++.|-|+..+ |++++ .|-.|+|||++.. -+..++..|...++.++|.......|.+++.||+|.
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 89999997654 55554 4778999999764 456788899999999999875557999999999864
No 108
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=9.2e-28 Score=213.22 Aligned_cols=285 Identities=21% Similarity=0.296 Sum_probs=220.5
Q ss_pred EEeeCC--CCCEEEEecCCCcEEEEEcccCCcc----eeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 151 INWSPT--HAHLLASAGMDQSICIWNVWSRDQK----LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 151 ~~~s~~--~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
..|++. ..++||.+..||.|.++|....... .......|.+.|..+.|.|....|++++.|.++++||+++.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 556543 3678999999999999998543222 2344567999999999999878899999999999999999887
Q ss_pred EEe---eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc---------------------------eEEEeccCC
Q 013475 225 TQS---FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK---------------------------VAHEYIQSL 274 (442)
Q Consensus 225 ~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~ 274 (442)
+.. +.|.+.|.+++|.+.+...|++|+.||.|.|||++-.. .+...+.+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 765 44999999999999999999999999999999997321 011122344
Q ss_pred CCEeE---EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec----------cccceeeeEEecCCCCeeEE
Q 013475 275 GPILD---VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY----------VEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 275 ~~i~~---~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~ 341 (442)
..|.+ +.+..|...|++++. .|+.|++||+++......... .....+.++.....|.++++
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga------~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGA------ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred CceeeeeEEEEEeccceeeeccC------CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 44555 566678888988886 399999999998553322211 12346788888889999999
Q ss_pred EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce-eeEeeeccCCceeEEE
Q 013475 342 QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE-LERKIKAYEQACIDVA 420 (442)
Q Consensus 342 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~ 420 (442)
.+.|+.|+.|++.....- ....+.++.....-..-..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++
T Consensus 289 sCtD~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred EecCCcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 999999999999865432 22333344333444456789999999999999999999998864 4566789999999999
Q ss_pred EcCCCCCEEEEeeCCCcEEEcC
Q 013475 421 FHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.|..-.-+++|++|-.++||+
T Consensus 368 w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 368 WLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred eccccCCCceeeccCcceEEEe
Confidence 9887655788999999999996
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=3e-26 Score=205.26 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=200.9
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE-EEEecCCcEEEEECCCCcEEEeeeCCcceEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV-LSCGYDCSSRLVDVEKGIETQSFREELAVRV 236 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~ 236 (442)
++++++++.|+.|++||+.++ +....+..+ ..+.+++|+++++.+ ++++.++.|++||+.+++....+.....+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC--ceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE
Confidence 357889999999999998544 566666644 447789999999876 5566789999999999988877765555678
Q ss_pred EEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC-eEEEEeCCCCcc
Q 013475 237 VKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN-SIVVWDVSREVP 315 (442)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~-~i~iwd~~~~~~ 315 (442)
++|+|++..++++++.++.|++||+++.+.+..+..+ ..+.+++|+|+|++++++.. ++ .+.+||..+...
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~-------~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSE-------TTNMAHFIDTKTYEI 149 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEec-------CCCeEEEEeCCCCeE
Confidence 9999997545556667899999999988777766533 34688999999999998876 54 577789887665
Q ss_pred cceeeccccceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCcccccceeEe--ecccccCcEEEEEccCCCEEEE-ecC
Q 013475 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPFRLDKFKRYE--SHGVSGFPIKCSFSLDGEKLVS-GSS 391 (442)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~-g~~ 391 (442)
...... ......+.|++++.+++++ ..++.|++||+.+......+.... .+........++|+++|+++++ .+.
T Consensus 150 ~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 150 VDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred EEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 443322 2345678999999988655 468999999998875443222100 0111123456889999998655 355
Q ss_pred CCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe-eCCCcEEEcC
Q 013475 392 DGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC-SWNGDVSVYE 442 (442)
Q Consensus 392 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd 442 (442)
++.|.+||+++++.+..+. +...+.+++|+|++ .+|+++ +.+|.|+|||
T Consensus 228 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE-KYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCeEEEEECCCCcEEEEEE-eCCCcceEEECCCC-CEEEEEcCCCCeEEEEE
Confidence 6789999999888776554 45579999999999 566665 5699999997
No 110
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=199.37 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=205.4
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee---------CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR---------EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
....+.|..|+|||++|++|+.||.|.+||..+|+..+.++ ++..|.|+.|+.| ..++++|+.||.|++|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIKVW 290 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEEEE
Confidence 55678899999999999999999999999999997765443 5788999999998 5899999999999999
Q ss_pred ECCCCceEEEec-cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCe
Q 013475 260 DIRTGKVAHEYI-QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 260 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (442)
.+++|.+++.|. .|...|+++.|+.|+..+++++. |.++++.-+..++.++.+. .|...+....|.++|.+
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-------D~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-------DQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHH 362 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-------cceEEEeccccchhHHHhc-CccccccceEEcCCCCe
Confidence 999999999996 79999999999999999999998 9999999999998876654 56668899999999999
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeec---cCC
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKA---YEQ 414 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~ 414 (442)
+++++.|++|++|+..+..+...++.. .....|..+..-| +...++++...++|+|.++. |+.++.+.. ..+
T Consensus 363 iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTTECLSTFKPL---GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGG 438 (508)
T ss_pred EEEecCCccEEEecCcchhhhhhccCC---CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCC
Confidence 999999999999999998887554433 3445677777666 56789999999999999986 777777753 245
Q ss_pred ceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 415 ACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 415 ~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
...+...+|.| .++.+.+.|+.++.|
T Consensus 439 dFi~~~lSpkG-ewiYcigED~vlYCF 464 (508)
T KOG0275|consen 439 DFINAILSPKG-EWIYCIGEDGVLYCF 464 (508)
T ss_pred ceEEEEecCCC-cEEEEEccCcEEEEE
Confidence 66677899999 799999999988765
No 111
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=203.27 Aligned_cols=298 Identities=18% Similarity=0.268 Sum_probs=225.4
Q ss_pred cceecccccccceEEEEeeCCCC-CEEEEecCCCcEEEEEcc--cCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecC
Q 013475 136 RLSTALCHHTKAVNSINWSPTHA-HLLASAGMDQSICIWNVW--SRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYD 211 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d 211 (442)
......+-|.+.|++++|+|... +++|+|..-|.|-+||+. .....-+..+..|..+|.+|.|+| +...+++.++|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 33455677899999999999855 789999999999999995 233445566778999999999999 56789999999
Q ss_pred CcEEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEeeCC-
Q 013475 212 CSSRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTING- 286 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~- 286 (442)
|+|++-|++++.....+. ....+..+.|+.+. ..++.+..=|...+||++++.. ...+..|...|.+++++|..
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 999999999875433333 34456778888875 5566666667999999998654 66677788899999999965
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccc---eeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC----CCccc
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLS---KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST----PPFRL 359 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~----~~~~~ 359 (442)
.+|++++. |++++|||++.-.... .....|...|.+..|+|.+..|++.+.|+.|+|||.. .....
T Consensus 336 ~~laT~s~-------D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 336 WFLATASL-------DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred hheeeccc-------CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 56778887 9999999998743322 3455778899999999999999999999999999984 11111
Q ss_pred ccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC-CceeE-EEEcCCCCCEEEEeeCCCc
Q 013475 360 DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE-QACID-VAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~-~~~~p~~~~~l~s~~~dg~ 437 (442)
..+.....+...-......|.|+..+|++|..-..|-|+|-..++.+..+.... ..|.+ ..|+|-+..+++.++..|.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccce
Confidence 111111111111223457999999999999999999999998888888775433 25555 4799987325555667788
Q ss_pred EEEc
Q 013475 438 VSVY 441 (442)
Q Consensus 438 i~iw 441 (442)
|+||
T Consensus 489 i~vf 492 (498)
T KOG4328|consen 489 IYVF 492 (498)
T ss_pred EEEE
Confidence 8887
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.6e-28 Score=208.30 Aligned_cols=252 Identities=13% Similarity=0.136 Sum_probs=195.4
Q ss_pred eeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc----EEEeee--CCcceEEEEEccCCCCEEEEeeCCCc
Q 013475 182 LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI----ETQSFR--EELAVRVVKFHPENSNLFLSGGSKGL 255 (442)
Q Consensus 182 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~ 255 (442)
....+++|+..|.++++.|.|..|++|+.|.+|++||+.... ..+.+. ....|.+++|++.| ..|++.+....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCcc
Confidence 345677899999999999999999999999999999997642 223333 46789999999997 66666677788
Q ss_pred EEEEECCCCceE------------EEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-
Q 013475 256 LRLWDIRTGKVA------------HEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY- 321 (442)
Q Consensus 256 i~iwd~~~~~~~------------~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~- 321 (442)
.+|+|-...+.. ...++|...++|.+|+|+. ..|++++. ||+++|||+.+.+.......
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------DGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC-------CCcEEEEecCCchhheeEEee
Confidence 999995432222 2235788899999999965 56888888 99999999988653333222
Q ss_pred ----cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEE
Q 013475 322 ----VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYF 397 (442)
Q Consensus 322 ----~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i 397 (442)
.....++..+|+++++.|++|+.||.|.+|+..+......+.....|.....|+++.||+||++|++-+.|+++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3345788999999999999999999999999866555555555555665568999999999999999999999999
Q ss_pred EecCCc-eeeEeeecc--CCceeEEEEcCCCCCEEEEeeC------CCcEEEcC
Q 013475 398 YNCRSS-ELERKIKAY--EQACIDVAFHPILPNIIGSCSW------NGDVSVYE 442 (442)
Q Consensus 398 wd~~~~-~~~~~~~~~--~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd 442 (442)
||++.. +++....+. ...-+.++|||+. ++|++|.. -|.+.+||
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEe
Confidence 999875 445544443 3356789999998 79988863 35666664
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=203.64 Aligned_cols=256 Identities=16% Similarity=0.244 Sum_probs=212.9
Q ss_pred cccccc-CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEE
Q 013475 128 VRRSKI-PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVL 206 (442)
Q Consensus 128 ~~~~~~-~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 206 (442)
+..|.+ ...+..+|++|.+.|..|++.. ..+++++.|++|+.|.++. ....++. ....+..+.-+..+..++
T Consensus 91 VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~---~p~~til-g~s~~~gIdh~~~~~~Fa 163 (433)
T KOG0268|consen 91 VKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG---PPLHTIL-GKSVYLGIDHHRKNSVFA 163 (433)
T ss_pred EEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccC---Ccceeee-cccccccccccccccccc
Confidence 333333 3567889999999999999986 3578889999999999844 3666665 356677787777778889
Q ss_pred EEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC
Q 013475 207 SCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
||+. .|.|||.....+++.+. ....|.++.|+|....+|++|+.|+.|.+||++++.+++.+... ..-+.|+|+|+
T Consensus 164 TcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPe 240 (433)
T KOG0268|consen 164 TCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPE 240 (433)
T ss_pred ccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccceecCcc
Confidence 8875 49999999999999999 67789999999998899999999999999999999988776543 34478999999
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
+-.|+++.. |..++.||++.-.........+...+..+.|+|.|+.|++|+.|++|+||..+.+.....+.+.
T Consensus 241 afnF~~a~E-------D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 241 AFNFVAANE-------DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ccceeeccc-------cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 888999998 9999999999877666677778889999999999999999999999999999877655443332
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
.. ..|.++.||.|.+||++|+.|+.|++|.....+
T Consensus 314 RM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 RM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hh----heeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 22 348899999999999999999999999876544
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=216.34 Aligned_cols=314 Identities=18% Similarity=0.212 Sum_probs=243.4
Q ss_pred hcccccchhhhHhhhhhhcCCCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce
Q 013475 103 VLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL 182 (442)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 182 (442)
++.+-.|..++.|....... ......+..++.|.+.|+.+...-+ ++.|++++.|-+|++|+......-+
T Consensus 40 LfTgGRDg~i~~W~~~~d~~---------~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSN---------EPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred EEecCCCceEEEeccccccC---------CcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchh
Confidence 45555677777777543332 1122367889999999999999998 8899999999999999997665578
Q ss_pred eeeeccCCCceeEEEe-CCCCCEEEEEecCCcEEEEECCCCc--EEEee----------eCCcceEEEEEccCCCCEEEE
Q 013475 183 ARVLNFHSAAVNDVKW-SQQGLFVLSCGYDCSSRLVDVEKGI--ETQSF----------REELAVRVVKFHPENSNLFLS 249 (442)
Q Consensus 183 ~~~~~~h~~~v~~l~~-~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~----------~~~~~v~~~~~~~~~~~~l~~ 249 (442)
..++..|...|.|+++ .++...+++|+-|+.|.+||++++. .+..+ .+...|.+++.++.| ..|++
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivs 188 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVS 188 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEe
Confidence 8889999999999999 7788999999999999999999872 22222 256689999999986 89999
Q ss_pred eeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeee
Q 013475 250 GGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPC 329 (442)
Q Consensus 250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 329 (442)
|+..+.+++||.++++.+..+.+|...|..+..+.||..+++++. ||+|++||+....++.+...+.. .+.+
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-------DgtIrlWdLgqQrCl~T~~vH~e-~VWa 260 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-------DGTIRLWDLGQQRCLATYIVHKE-GVWA 260 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-------CceEEeeeccccceeeeEEeccC-ceEE
Confidence 999999999999999999999999999999999999999999998 99999999999999888666555 4999
Q ss_pred EEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc------
Q 013475 330 VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS------ 403 (442)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~------ 403 (442)
+..+|+-..+.+|+.++.|..-|+++......+. .....+..+..+.+.+-+-+++.|+.|+-|...-.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-----k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s 335 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-----KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVS 335 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEee-----cCCCchhhhhhccccCCceeeeccccceecCCccccccccC
Confidence 9999999999999999999999998853321111 11123445555544444566677788888865421
Q ss_pred -eeeE------------------eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 404 -ELER------------------KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 404 -~~~~------------------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+.. .++| ...|...+.-.|. +.++|=...|.+.+||
T Consensus 336 ~~~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dk-RhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 336 GDLDFFSTDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLNDK-RHVLTKDAKGNVALWD 391 (735)
T ss_pred CCCCcccccCCCccccccCCCceeccC-chhhhhhhhhcCc-ceEeeecCCCCEEEEE
Confidence 1100 0111 1123334444555 7899999999999998
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=5.7e-26 Score=207.77 Aligned_cols=283 Identities=16% Similarity=0.234 Sum_probs=228.0
Q ss_pred cceEEEEeeCC-CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 146 KAVNSINWSPT-HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 146 ~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
+.|+++ ++|. --+.++.|+.+|.+.||++. ..+.+.+++++...|+++.=+|--..++.|..+|+|.+++++.++.
T Consensus 160 ~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki 236 (910)
T KOG1539|consen 160 DFITAL-LHPSTYLNKIVVGSSQGRLQLWNVR--TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI 236 (910)
T ss_pred CceeeE-ecchhheeeEEEeecCCcEEEEEec--cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE
Confidence 337777 4554 23457889999999999994 4599999999999999999999777999999999999999999999
Q ss_pred EEeeeCC-cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec-cCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 225 TQSFREE-LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI-QSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 225 ~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
+..|++. +.|+.++|..||..++++|+..|.+.+||++..+.+..+. .|.+.|..+.|.+....+++.+. |
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~-------D 309 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA-------D 309 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC-------C
Confidence 9999986 9999999999999999999999999999999887766554 67777777777777777777776 6
Q ss_pred CeEEEEeCCC----------------------------------------------------------------------
Q 013475 303 NSIVVWDVSR---------------------------------------------------------------------- 312 (442)
Q Consensus 303 ~~i~iwd~~~---------------------------------------------------------------------- 312 (442)
+.+++|=..+
T Consensus 310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence 6665553221
Q ss_pred ------------------------------------------Ccccceeecc------ccceeeeEEecCCCCeeEEEeC
Q 013475 313 ------------------------------------------EVPLSKQVYV------EAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 313 ------------------------------------------~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
...- ..... ....+.+++.++.|++.+.|+.
T Consensus 390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc-cEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 0000 00000 1235778889999999999999
Q ss_pred CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce--------------------
Q 013475 345 GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE-------------------- 404 (442)
Q Consensus 345 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-------------------- 404 (442)
.|.|-+|++.++.....+. ....+...|+.++...-++.+++++.+|.+.+||+.+..
T Consensus 469 ~G~Id~fNmQSGi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred CCeEEEEEcccCeeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 9999999999987664443 223455779999999888999999999999999987433
Q ss_pred ---------------------eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 405 ---------------------LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 405 ---------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.++.|.+|.+.|++++||||| ++|++++.|++|++||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEe
Confidence 234455899999999999999 8999999999999998
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-25 Score=175.39 Aligned_cols=254 Identities=17% Similarity=0.317 Sum_probs=206.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc---eeeeeccCCCceeEEEeCCC----CCEEEE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK---LARVLNFHSAAVNDVKWSQQ----GLFVLS 207 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~----~~~l~s 207 (442)
..+.+.-+.|++.|+|.+|+|+ |++|++|+.|++|++.-++..... ....+..|.+.|..++|..+ +.+|++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 4445556789999999999999 999999999999999887554332 23456779999999999753 567777
Q ss_pred Eec-CCcEEEEECCCCcEEEeee-CCcceEEE-EEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-------CCCCE
Q 013475 208 CGY-DCSSRLVDVEKGIETQSFR-EELAVRVV-KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-------SLGPI 277 (442)
Q Consensus 208 ~~~-d~~v~vwd~~~~~~~~~~~-~~~~v~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i 277 (442)
++. |..|++-|..+|+....+. |.+.|.++ .|+ ..+|++|+.|.+|++||++-..++.++.. ..+.|
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 654 7888888999999988888 77777665 343 48999999999999999998887776632 23578
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
..++..|.|++|+++.. |....+||++.+..++.+ ..+...+.++.|+|...++++++.|..|++-|+....
T Consensus 235 aav~vdpsgrll~sg~~-------dssc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHA-------DSSCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEEEECCCcceeeeccC-------CCceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 99999999999999998 999999999998877554 5677799999999999999999999999999998754
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
.. .+.......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 307 a~-el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AH-ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hh-cCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 32 22333334555778899999999889999999999999764
No 117
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-26 Score=207.73 Aligned_cols=288 Identities=16% Similarity=0.279 Sum_probs=228.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee-ccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL-NFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.+.+.+|+.-.+.|+.++|..||...+++|+..|.+.+||++.. +++..+ ..|.+.|....|.+....+++++.|+.
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 45667777557999999999997778899999999999999543 433333 357677777777777677777777776
Q ss_pred EEEEECCCCc----------------------------------------------------------------------
Q 013475 214 SRLVDVEKGI---------------------------------------------------------------------- 223 (442)
Q Consensus 214 v~vwd~~~~~---------------------------------------------------------------------- 223 (442)
+++|=.+++.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 6666332110
Q ss_pred ------------------------------------------E-EEeeeC------CcceEEEEEccCCCCEEEEeeCCC
Q 013475 224 ------------------------------------------E-TQSFRE------ELAVRVVKFHPENSNLFLSGGSKG 254 (442)
Q Consensus 224 ------------------------------------------~-~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg 254 (442)
. ...+.+ ...+++++.++-| ++.+.|+..|
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G 470 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKG 470 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCC
Confidence 0 000011 1457788888876 8889999999
Q ss_pred cEEEEECCCCceEEEe---ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEE
Q 013475 255 LLRLWDIRTGKVAHEY---IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVR 331 (442)
Q Consensus 255 ~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 331 (442)
.|-+|++.+|-....+ ..|.++|+.++...-++.+++++. +|.+++||..+...+..... ...+.++.
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~-------~Gilkfw~f~~k~l~~~l~l--~~~~~~iv 541 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA-------DGILKFWDFKKKVLKKSLRL--GSSITGIV 541 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC-------cceEEEEecCCcceeeeecc--CCCcceee
Confidence 9999999999888888 579999999999988999999998 99999999998775544433 34577788
Q ss_pred ecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec
Q 013475 332 HHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA 411 (442)
Q Consensus 332 ~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 411 (442)
.+-....++++..+-.|+++|..+.... +.+.+|. ..+++++|||||++|++++.|++|++||+.++.++-.+.-
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvv---R~f~gh~--nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVV---REFWGHG--NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhh---HHhhccc--cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 8888889999999999999999876554 4455444 7799999999999999999999999999999999887763
Q ss_pred cCCceeEEEEcCCCCCEEEEeeCC-CcEEEc
Q 013475 412 YEQACIDVAFHPILPNIIGSCSWN-GDVSVY 441 (442)
Q Consensus 412 ~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iw 441 (442)
..+++.+.|+|+| .+|||...| .-|++|
T Consensus 617 -d~~~~sls~SPng-D~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 617 -DSPCTSLSFSPNG-DFLATVHVDQNGIYLW 645 (910)
T ss_pred -CCcceeeEECCCC-CEEEEEEecCceEEEE
Confidence 7889999999999 799999988 678988
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3e-26 Score=186.76 Aligned_cols=236 Identities=19% Similarity=0.236 Sum_probs=194.0
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH 268 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 268 (442)
....|..|.|++.++.|++++.||++++||+........+++..++.+++|.++ ..+++|+.||.|+.+|+++++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc-e
Confidence 357899999999989999999999999999999999999999999999999985 6889999999999999988765 4
Q ss_pred EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeE
Q 013475 269 EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYI 348 (442)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 348 (442)
.+..|..+|.+|.+++....+++|+. |++|++||.+............ .|.++ +-.+..|++|+.+..+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsW-------D~~ik~wD~R~~~~~~~~d~~k--kVy~~--~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSW-------DKTIKFWDPRNKVVVGTFDQGK--KVYCM--DVSGNRLVVGTSDRKV 157 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEccc-------CccEEEEeccccccccccccCc--eEEEE--eccCCEEEEeecCceE
Confidence 55678899999999999999999998 9999999999744443333222 34443 4468899999999999
Q ss_pred EEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc----eeeEeeeccC---------Cc
Q 013475 349 AIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS----ELERKIKAYE---------QA 415 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~---------~~ 415 (442)
.+||+++...... .........+.++++-|++.=+++++-||.|.+=.++.. +....|+.|. .+
T Consensus 158 ~iyDLRn~~~~~q---~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQ---RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred EEEEcccccchhh---hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 9999997654431 112233345778999999888999999999998776655 4455677773 27
Q ss_pred eeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 416 CIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|++|+|+|-. ..|+|||.||.|.+||
T Consensus 235 VNai~Fhp~~-~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 235 VNAIAFHPIH-GTFATGGSDGIVNIWD 260 (323)
T ss_pred eceeEecccc-ceEEecCCCceEEEcc
Confidence 9999999997 6999999999999998
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.2e-27 Score=200.35 Aligned_cols=255 Identities=17% Similarity=0.252 Sum_probs=211.0
Q ss_pred CEEEEec-CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEE
Q 013475 159 HLLASAG-MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRV 236 (442)
Q Consensus 159 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~ 236 (442)
.+++++. ....|.+|.+... ........-.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+. |-..|+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~--~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKK--DQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCch--hhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeE
Confidence 4555554 3458999998433 2222222356889999999999999998899999999999999998888 8999999
Q ss_pred EEEccCCCCEEEEeeCCCcEEEEECC---------CCceEEEeccCCCCEeEEEEeeC--CCEEEeccCCCCCcCCCCeE
Q 013475 237 VKFHPENSNLFLSGGSKGLLRLWDIR---------TGKVAHEYIQSLGPILDVEFTIN--GKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i 305 (442)
+.|+-|| .+|++|++||.|.+|++. +-++++.|..|.-+|+++...+. ..++++++. |.++
T Consensus 129 L~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~-------D~t~ 200 (476)
T KOG0646|consen 129 LKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE-------DRTI 200 (476)
T ss_pred EEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC-------CceE
Confidence 9999996 899999999999999874 23567889999999999998765 467899998 9999
Q ss_pred EEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc-------------cccceeEeeccccc
Q 013475 306 VVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR-------------LDKFKRYESHGVSG 372 (442)
Q Consensus 306 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-------------~~~~~~~~~~~~~~ 372 (442)
++||+..+..+..+..+ ..+.+++.+|.+..+.+|+.+|.|.+.++..... ...+..+.+|....
T Consensus 201 k~wdlS~g~LLlti~fp--~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFP--SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEEeccceeeEEEecC--CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 99999999877666544 4689999999999999999999999988765431 12334556666556
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCC
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 425 (442)
.|+|++++-||.+|++|+.||.|.|||+.+.++++++....++|+.+.+.|-.
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 89999999999999999999999999999999999988678899999986543
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=197.39 Aligned_cols=234 Identities=21% Similarity=0.316 Sum_probs=198.7
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
++|...|.+++.|+| |+||++|+.|..|.||+.++ .+.++.+.+|.+.|.+++|-.....|++++.|+.|++|+++.
T Consensus 199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 489999999999999 99999999999999999954 477888999999999999999889999999999999999998
Q ss_pred CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 222 GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 222 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
...+.++- |...|..+.....+ ..+-+|+.|+++++|++.. +....+.++.+.+.|++|- +...|++|+.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSd------ 346 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSD------ 346 (479)
T ss_pred hHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccC------
Confidence 87776665 99999999888774 7777788999999999954 3445677888899999997 5567899998
Q ss_pred CCCeEEEEeCCCCcccceeecccc-----------ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEA-----------YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+|.|.+|++.+.+++......|. ..+++++..|...++++|+.+|.|++|-+..+.+. +..+....
T Consensus 347 -nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~~ls 423 (479)
T KOG0299|consen 347 -NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLYSLS 423 (479)
T ss_pred -CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--cceeeecc
Confidence 99999999999888776554332 26889999999999999999999999999887553 23333344
Q ss_pred cccCcEEEEEccCCCEEEEec
Q 013475 370 VSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~ 390 (442)
..+.|+.++|+.+|+.|++|.
T Consensus 424 ~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccEEEEEEEccCCCEEEEec
Confidence 568899999999999777663
No 121
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=3.4e-26 Score=187.83 Aligned_cols=292 Identities=18% Similarity=0.335 Sum_probs=219.0
Q ss_pred cccccccceEEEEeeC----CCCCEEEEecCCCcEEEEEcccCCc-ceeeeec--cCCCceeEEEeCCC----CCEEEEE
Q 013475 140 ALCHHTKAVNSINWSP----THAHLLASAGMDQSICIWNVWSRDQ-KLARVLN--FHSAAVNDVKWSQQ----GLFVLSC 208 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~----~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~--~h~~~v~~l~~~~~----~~~l~s~ 208 (442)
....|+.+|..++|++ +..+.+++++. ..+.+|+...... ..++.+. .|.+..+.++|+-+ .-+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457899999999984 23567788775 4889998754321 2233322 37778888999764 4578899
Q ss_pred ecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCCCEeEEEEee
Q 013475 209 GYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLGPILDVEFTI 284 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~ 284 (442)
+.-|.|+|.|+.++++...+. |...|+.+.|+|+..+++++++.|..|++||+++..++..+ .+|.+.|.++.|+.
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 999999999999999998888 99999999999998899999999999999999999988777 56889999999999
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCccccee---------------------------eccccceeeeEEecCCCC
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ---------------------------VYVEAYTCPCVRHHPFDP 337 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 337 (442)
+|.+|++++. |.+|++|++...+....+ ...|...+.|+.|. |.
T Consensus 192 ~gd~i~ScGm-------Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd 262 (385)
T KOG1034|consen 192 DGDRIASCGM-------DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD 262 (385)
T ss_pred CCCeeeccCC-------cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence 9999999999 999999999843211111 11222334444443 57
Q ss_pred eeEEEeCCCeEEEeeCC-CCccc----------ccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceee
Q 013475 338 YFVAQSNGNYIAIFSST-PPFRL----------DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE 406 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~-~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~ 406 (442)
++++-+.++.|..|..- -...+ ..+..+....-..+....+|.+-++.|+.|...|.|++||++..+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 88888889999999872 11111 11122222222223345677888999999999999999999887652
Q ss_pred --Eeeecc--CCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 407 --RKIKAY--EQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 407 --~~~~~~--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.++..+ ...|...+|+.|+ .+|+...+|++|.-||
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWD 381 (385)
T ss_pred cCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEE
Confidence 222222 4579999999999 7888889999999886
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=189.32 Aligned_cols=257 Identities=21% Similarity=0.318 Sum_probs=213.5
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEc------ccC----------------------------C
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNV------WSR----------------------------D 179 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~------~~~----------------------------~ 179 (442)
.++++.++.||.+.|++++|++. +.++++++.|++-.||.. ... .
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred cccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 57899999999999999999999 999999999999999972 000 0
Q ss_pred ----cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCC
Q 013475 180 ----QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKG 254 (442)
Q Consensus 180 ----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg 254 (442)
..++..+.+|.+.|.+..|...|+.+++++.|.+..+||+++++.+..+. |+...+.++-+|. ..++++.+.|.
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvTsSrDt 336 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVTSSRDT 336 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-ceEEEEeccCc
Confidence 12455678899999999999999999999999999999999999999998 8999999999998 59999999999
Q ss_pred cEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc-cceeeccccceeeeEEe
Q 013475 255 LLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP-LSKQVYVEAYTCPCVRH 332 (442)
Q Consensus 255 ~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 332 (442)
+.++||++.. ..+..|.+|...|+++.|.-+ ..++++++ |.+|++||+++... +.++. ....+..++.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSD-------DrTvKvWdLrNMRsplATIR--tdS~~NRvav 406 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSD-------DRTVKVWDLRNMRSPLATIR--TDSPANRVAV 406 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecC-CceeecCC-------CceEEEeeeccccCcceeee--cCCccceeEe
Confidence 9999999853 456789999999999999865 46788888 99999999998543 33332 3446788888
Q ss_pred cCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC--CEEEEecCCCcEEEEecCCc
Q 013475 333 HPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG--EKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 333 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~iwd~~~~ 403 (442)
+..++.++.-..+..|++||+++.... .+.......|...|++++|..+. .-|++++.|..+.=|++...
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~Rla-RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGNRLA-RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCCccc-cCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 888889999999999999999876433 33333344566779999998754 45788889999999998653
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=214.08 Aligned_cols=246 Identities=20% Similarity=0.381 Sum_probs=206.5
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEccc-CCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCCcE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWS-RDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
.+..|.|..-..++|||++..|.|.+||+.. ...+++..|..|+..|+++.|++ ..++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4667888865578999999999999999954 12567778899999999999998 568999999999999999999988
Q ss_pred EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 225 TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
..++. ....|..+.|+|...+.|+++.+.|.+++||++.. ++...+..|.++|.++.|+|++.+|++|+. |
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-------D 241 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-------D 241 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC-------C
Confidence 88887 67789999999988899999999999999999975 456788999999999999999999999998 9
Q ss_pred CeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE-e--CCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 303 NSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ-S--NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 303 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
+.|+|||+...+...........++.++.|-|...+.++. + .|..|+|||++..... +..+..| ...++.++|
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP--~~t~~eH--~~~vt~i~W 317 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP--YATFLEH--TDSVTGIAW 317 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc--ceeeecc--Cccccceec
Confidence 9999999998777767777777899999999998876553 2 4678999999876543 3444444 466888999
Q ss_pred cc-CCCEEEEecCCCcEEEEecCCc
Q 013475 380 SL-DGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 380 s~-~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
.. |...|.+++.||+|..-.++++
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhcc
Confidence 76 5567889999998876665544
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-25 Score=180.29 Aligned_cols=245 Identities=17% Similarity=0.278 Sum_probs=191.3
Q ss_pred ccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC----cEEEeee-CCcceEEEEEc-cCCCCEEEEeeCCCcEEEEE
Q 013475 187 NFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG----IETQSFR-EELAVRVVKFH-PENSNLFLSGGSKGLLRLWD 260 (442)
Q Consensus 187 ~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~-~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd 260 (442)
.+|..-|+++.|.+.|+.+++|+.|++|+|||.+.. .+....+ |.+.|..+.|. |.-+..+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468899999999999999999999999999997543 3444455 89999999995 44468999999999999997
Q ss_pred CCCC---------ceEEEeccCCCCEeEEEEeeC--CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec--------
Q 013475 261 IRTG---------KVAHEYIQSLGPILDVEFTIN--GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-------- 321 (442)
Q Consensus 261 ~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------- 321 (442)
-... ....++....+.|++++|.|. |-.+++++. ||.++||+.-....+.....
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a-------DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA-------DGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc-------CcEEEEEecCCccccccchhhhhhhhcc
Confidence 5211 234556677789999999984 678888888 99999999876443333221
Q ss_pred ----cccceeeeEEecCC---CCeeEEEeCC-----CeEEEeeCCCCc-ccccceeEeecccccCcEEEEEccC----CC
Q 013475 322 ----VEAYTCPCVRHHPF---DPYFVAQSNG-----NYIAIFSSTPPF-RLDKFKRYESHGVSGFPIKCSFSLD----GE 384 (442)
Q Consensus 322 ----~~~~~~~~~~~~~~---~~~l~~~~~~-----~~i~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~----g~ 384 (442)
.....+.|+.|++. .++|++|+.+ +.++||...... +...+..+. .+...|+.++|.|+ ..
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCcee
Confidence 23456788999874 3578887766 588888877665 444445554 45588999999995 35
Q ss_pred EEEEecCCCcEEEEecCCc--------------------eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 385 KLVSGSSDGSIYFYNCRSS--------------------ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 385 ~l~~g~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+||+++.|| |+||++... +.+..+..|.+.|+.+.|+-.| .+|++.|.||.||+|.
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehh
Confidence 789999999 999998731 3455677899999999999999 7999999999999994
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-26 Score=180.94 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=197.4
Q ss_pred eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc---EEEeee-CCcceEEEEEc-cCCCCEEEEeeCCCcEEEEE
Q 013475 186 LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI---ETQSFR-EELAVRVVKFH-PENSNLFLSGGSKGLLRLWD 260 (442)
Q Consensus 186 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~-~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd 260 (442)
-..|...|.++...--|+.|+||+.|++|+|+.++++. .+.++. |.++|..++|. |.-+.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34688999998888889999999999999999998764 445555 99999999995 44458999999999999999
Q ss_pred CCCCc--eEEEeccCCCCEeEEEEeeC--CCEEEeccCCCCCcCCCCeEEEEeCCCC--cccceeeccccceeeeEEecC
Q 013475 261 IRTGK--VAHEYIQSLGPILDVEFTIN--GKQFVSSSDVSGSNMSENSIVVWDVSRE--VPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 261 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~ 334 (442)
-.+++ ....+..|...|++++|-|. |-.|++++. ||.|.|.+++.. ....++...|...+.+++|.|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS-------DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS-------DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeC-------CCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 88774 45667789999999999885 567788887 999999998875 344556667888899999998
Q ss_pred C---C-----------CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC----CEEEEecCCCcEE
Q 013475 335 F---D-----------PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG----EKLVSGSSDGSIY 396 (442)
Q Consensus 335 ~---~-----------~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~g~~dg~i~ 396 (442)
. | +.|++|+.|+.|+||+.+...-. .-..+. .|.+.|..++|.|.- .+|++++.||++.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-~e~~l~--~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-LERTLE--GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchh-hhhhhh--hcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 6 4 56999999999999999886221 112244 455889999999953 6899999999999
Q ss_pred EEecCCc-e--eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 397 FYNCRSS-E--LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 397 iwd~~~~-~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
||..... + ....++.....+..+.|+..| ++|+.++.|+.|.+|
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLW 283 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEE
Confidence 9986521 1 122233456789999999999 799999999999999
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.2e-24 Score=192.15 Aligned_cols=268 Identities=14% Similarity=0.139 Sum_probs=198.5
Q ss_pred CcceecccccccceEEEEeeCCCCCEE-EEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE-ecCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLL-ASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC-GYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~ 212 (442)
++.+..+.+|.. +.+++|+|+ ++.+ ++++.++.|++||..+. +....+..+. .+..++|+++++.++++ +.++
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDLATG--EVIGTLPSGP-DPELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEECCCC--cEEEeccCCC-CccEEEECCCCCEEEEEcCCCC
Confidence 456666766544 678999999 6655 67788999999998544 4555555443 35788999999877655 4589
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC-cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG-LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
.|++||+.+++.+..+.....+.+++|+|++ .+++++..++ .+.+||.++++....+... ..+..+.|++++++|+.
T Consensus 96 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWV 173 (300)
T ss_pred eEEEEECCCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEE
Confidence 9999999998888888766667899999997 6777777654 5778899887766554333 34578999999998855
Q ss_pred c-cCCCCCcCCCCeEEEEeCCCCcccceeecc------ccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccce
Q 013475 292 S-SDVSGSNMSENSIVVWDVSREVPLSKQVYV------EAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 292 ~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~ 363 (442)
+ .. ++.|.+||+++++.+..+... .......+.++|+++++++ ...++.+.+||..+.....
T Consensus 174 ~~~~-------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--- 243 (300)
T TIGR03866 174 SSEI-------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--- 243 (300)
T ss_pred EcCC-------CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE---
Confidence 4 44 899999999987765544321 1112346889999998655 4556789999997654331
Q ss_pred eEeecccccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 364 RYESHGVSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 364 ~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
.. . ....+.+++|+|+|++|+++ ..+|.|.+||+.+++++..++. ....++++++|
T Consensus 244 ~~-~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 244 YL-L--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EE-E--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 11 1 12357899999999999886 4689999999999999999975 45668888875
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.3e-27 Score=215.05 Aligned_cols=237 Identities=20% Similarity=0.348 Sum_probs=208.5
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
+.+..|...|.|+..-.. ++.+++|+.|-.+-+|.+ .+...+..+.+|..+|.++.|+.+..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i--~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAI--GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeecc-ceeeccCCCceeeccccc--cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 455679999999998555 899999999999999998 54566667899999999999999999999999999999999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
++..+.++.+. |...+..+.|+|-+ .+++.|+.|+.+++||++...+.+.+.+|...|..+.|+|+|++++.+++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 99999888887 88999999999996 88899999999999999988899999999999999999999999999998
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEE
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
|..++|||+..++.... |.. +.+.+..+
T Consensus 175 ----d~tvki~d~~agk~~~e----------------------------------------------f~~--~e~~v~sl 202 (825)
T KOG0267|consen 175 ----DNTVKIWDLTAGKLSKE----------------------------------------------FKS--HEGKVQSL 202 (825)
T ss_pred ----cceeeeecccccccccc----------------------------------------------ccc--cccccccc
Confidence 99999999988765432 222 22446677
Q ss_pred EEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
.|+|..-+++.|+.|++|++||+++.+.+.........|.+++|++++ ..+.+|..+
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~ 259 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG-KIVLSGEQI 259 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc-eeeecCchh
Confidence 899988899999999999999999999999888888899999999998 677776544
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=190.96 Aligned_cols=261 Identities=13% Similarity=0.134 Sum_probs=203.5
Q ss_pred ecCC-CcEEEEEcccCCcceeeeeccC-CCceeEEEeCCCCCEEEEEec-CCcEEEEECCCCcEEE-eeeCCcceEEEEE
Q 013475 164 AGMD-QSICIWNVWSRDQKLARVLNFH-SAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEKGIETQ-SFREELAVRVVKF 239 (442)
Q Consensus 164 ~~~d-g~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~-~~~~~~~v~~~~~ 239 (442)
++.| .++.+||+.++ .....+++. ...-.++..- ++.+++++.. -..|.+|.+....... .+...+.|.+++-
T Consensus 13 sS~d~~~~~~~dl~TG--t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTG--TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred cCCCCcceeEEecCCC--ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 3444 45999999665 555555543 1111222211 3356666654 4578999998765555 4447899999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC------
Q 013475 240 HPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE------ 313 (442)
Q Consensus 240 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~------ 313 (442)
+|.| .+++.|+..|.|++|.+.+|..+..+..|-..|+++.|+.||.+|++++. ||.|.+|++..-
T Consensus 90 ~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk-------Dg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 90 SNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK-------DGAVLVWLLTDLVSADND 161 (476)
T ss_pred CCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-------CccEEEEEEEeecccccC
Confidence 9996 88888889999999999999999999999999999999999999999998 999999987531
Q ss_pred --cccceeeccccceeeeEEecCC--CCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe
Q 013475 314 --VPLSKQVYVEAYTCPCVRHHPF--DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG 389 (442)
Q Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 389 (442)
.........|...|+.+...+. ..++++++.|.++++||+..+..+.. ......+.+++.+|-++.+++|
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt------i~fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT------ITFPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE------EecCCcceeEEEcccccEEEec
Confidence 1122334466778888887765 46899999999999999998855422 2233568899999999999999
Q ss_pred cCCCcEEEEecCCc----------------eeeEeeeccCC--ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 390 SSDGSIYFYNCRSS----------------ELERKIKAYEQ--ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 390 ~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+++|.|.+.++... ..+..+.+|.+ .|+|++.+-|| .+|++|+.||.++|||
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWD 305 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEe
Confidence 99999999887532 34556778877 99999999999 8999999999999998
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=8.3e-26 Score=193.44 Aligned_cols=214 Identities=22% Similarity=0.367 Sum_probs=177.6
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-----ceeeeeccCCCceeEEEeCC-CCCEEEEE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-----KLARVLNFHSAAVNDVKWSQ-QGLFVLSC 208 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~ 208 (442)
...-.+|.||++.=+.|+|++...-.|++++.|++|++||+..... .....+.+|+..|..++|++ +..+|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 3455688999998899999998666899999999999999964432 45667889999999999999 66789999
Q ss_pred ecCCcEEEEECCC--CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEee
Q 013475 209 GYDCSSRLVDVEK--GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 209 ~~d~~v~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~ 284 (442)
+.|+.+.|||+++ .+...... |...|+|++|+|-+..+|++|+.|++|.+||+|+. ++++++.+|...|.++.|+|
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 9999999999995 34444444 89999999999999999999999999999999975 47899999999999999999
Q ss_pred CC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccc-------------eeeccccceeeeEEecCCCCeeEE-EeCCCeEE
Q 013475 285 NG-KQFVSSSDVSGSNMSENSIVVWDVSREVPLS-------------KQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIA 349 (442)
Q Consensus 285 ~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~ 349 (442)
.. ..|++++. |+.+.+||+..-.... .+-..|...|..+.|+|....+++ .+.|+.+.
T Consensus 327 h~etvLASSg~-------D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 327 HNETVLASSGT-------DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred CCCceeEeccc-------CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 75 45666666 9999999997632221 233456678999999999987555 88999999
Q ss_pred EeeCCC
Q 013475 350 IFSSTP 355 (442)
Q Consensus 350 i~~~~~ 355 (442)
||.+..
T Consensus 400 IW~~s~ 405 (422)
T KOG0264|consen 400 IWQMAE 405 (422)
T ss_pred Eeeccc
Confidence 999864
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=199.72 Aligned_cols=285 Identities=18% Similarity=0.212 Sum_probs=224.6
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-ceeeeeccCCCceeEEEeCC-C----------CCEEEEEecCCcEE
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-KLARVLNFHSAAVNDVKWSQ-Q----------GLFVLSCGYDCSSR 215 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~-~----------~~~l~s~~~d~~v~ 215 (442)
..++.|++. ...|.+...|..++|||+++-+. .....+-.|...|+.+.-.| + ...|++|+.|++|+
T Consensus 327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 456789998 77888889999999999965432 12223344888888887766 1 13589999999999
Q ss_pred EEECCCCcEEEe--------------------------------------eeCCcceEEEEEccCCCCEEEEeeCCCcEE
Q 013475 216 LVDVEKGIETQS--------------------------------------FREELAVRVVKFHPENSNLFLSGGSKGLLR 257 (442)
Q Consensus 216 vwd~~~~~~~~~--------------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 257 (442)
+||++.+..-.. +.....+.+++.+|+| .+|++|..-|.++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLR 484 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceE
Confidence 999976311100 0123468999999997 8999999999999
Q ss_pred EEECCCCceEEEeccCCCCEeEEEEee---CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC
Q 013475 258 LWDIRTGKVAHEYIQSLGPILDVEFTI---NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
+|++.+.+....+..|...|.|+.|+. ..++|++++. |.-|++||+.....+......|...|+++.|.-
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr-------dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR-------DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC-------CceEEEEecccccchhhhhcccccceeEEEEee
Confidence 999999888888899999999999985 3578888888 999999999988888888888899999999988
Q ss_pred CC--CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec-
Q 013475 335 FD--PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA- 411 (442)
Q Consensus 335 ~~--~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 411 (442)
.| ..+++++.|+.|.+-.......-..+..-........+..++..|.-+++++++.|..|+|||+.+++..+.|++
T Consensus 558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 77 678888888877654433221111111111111234578899999999999999999999999999999999975
Q ss_pred --cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 412 --YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 412 --~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|++....+...|.| .+|++...|.+|.++|
T Consensus 638 ~~~eG~lIKv~lDPSg-iY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSG-IYLATSCSDKTLCFVD 669 (1080)
T ss_pred ccCCCceEEEEECCCc-cEEEEeecCCceEEEE
Confidence 56788899999999 8999999999999987
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=9.1e-25 Score=189.19 Aligned_cols=292 Identities=17% Similarity=0.156 Sum_probs=228.4
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC------------------------------------
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD------------------------------------ 179 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------ 179 (442)
+..+....|.+.|.+++.-.+ |.+ ++|+.|..|..||-.-.+
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr~-Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLRD-GTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred eEEeEeeecCCceEEEEEecC-ccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 444555599999999999999 864 569999999999831100
Q ss_pred --cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEE
Q 013475 180 --QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLR 257 (442)
Q Consensus 180 --~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 257 (442)
........+|......++.+|+...+++++.|+.+++|+ ..+.+.......++.|+.|+|.| .++.|...|...
T Consensus 356 ~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 356 LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWF 431 (626)
T ss_pred ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEE
Confidence 001122345888899999999999999999999999999 66677777788999999999986 889999999999
Q ss_pred EEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeeccccceeeeEEecCCC
Q 013475 258 LWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 336 (442)
+.|.++...+..-.. ..+++++.|+|+|.+|+.++. |+.|+||.+.... ........+...++.+.|++|+
T Consensus 432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~-------d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH-------DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecC-------CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 999998665555444 789999999999999999999 9999999997644 3333333445789999999999
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeE-------------eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRY-------------ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
+++.+.+.|-.|..|...........+.. .+..+...+..++-+.+++++++|...|+|++|...-.
T Consensus 504 ~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC
Confidence 99999999999999954432222111111 11122334555677788899999999999999987532
Q ss_pred ---eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 404 ---ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 404 ---~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
....++.+|.+-|++++|.-+. ..|++.+.|.+|..|+
T Consensus 584 s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 584 SPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWR 624 (626)
T ss_pred CCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEE
Confidence 3456778999999999999887 6777777999999995
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=6.5e-24 Score=183.94 Aligned_cols=284 Identities=12% Similarity=0.204 Sum_probs=215.4
Q ss_pred CCcceecccccccceEEEEeeCCC-CCEEEEe--cCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC-CEEEEEe
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTH-AHLLASA--GMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG-LFVLSCG 209 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~-~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~ 209 (442)
.-..++.+......|+|++|++-+ |.+|+.- +.+..+.|||... +......+..++.|....|+|.+ +++++++
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk--~~~~~~vk~sne~v~~a~FHPtd~nliit~G 220 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQK--KAKLGPVKTSNEVVFLATFHPTDPNLIITCG 220 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchh--hhccCcceeccceEEEEEeccCCCcEEEEeC
Confidence 344556666778899999999863 5555544 4556889999943 35555555567889999999955 5555554
Q ss_pred cCCcEEEEECCCCcEEEee---e--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee
Q 013475 210 YDCSSRLVDVEKGIETQSF---R--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 284 (442)
.+.+..|+.+.+...+.. + .+..|.|++|.++| -+++|..+|.|.||+..+.+..+....|.+.|.+++...
T Consensus 221 -k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 221 -KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred -CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence 888999999988665443 2 45779999999986 478999999999999988887777779999999999999
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc-----------cc----------------------------eeeccccc
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVP-----------LS----------------------------KQVYVEAY 325 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~-----------~~----------------------------~~~~~~~~ 325 (442)
+|.+|- |+. |..|..||-.-.+. +. .....|..
T Consensus 298 ~GtllS-GgK-------DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d 369 (626)
T KOG2106|consen 298 DGTLLS-GGK-------DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD 369 (626)
T ss_pred CccEee-cCc-------cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence 997666 887 99999998321110 00 01112333
Q ss_pred eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 326 TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
....++.+|+...+++++.|+.+++|+ .. ...+ .. .....+.++.|+|.| .++.|...|...+.|.++...
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~-~~-k~~w--t~----~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWN-DH-KLEW--TK----IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEcc-CC-ceeE--EE----EecCceeEeeccCcc-eEEEeeccceEEEEeccccee
Confidence 456678899999999999999999999 21 1111 11 112446789999999 999999999999999998655
Q ss_pred eEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 406 ERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 406 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+..-. ...+++.++|+|+| .+||.|+.|+.|+||
T Consensus 441 v~~~~-d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 441 VTIHT-DNEQLSVVRYSPDG-AFLAVGSHDNHIYIY 474 (626)
T ss_pred EEEEe-cCCceEEEEEcCCC-CEEEEecCCCeEEEE
Confidence 54444 48899999999999 899999999999997
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.1e-24 Score=189.34 Aligned_cols=279 Identities=16% Similarity=0.203 Sum_probs=224.7
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccC-CCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFH-SAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
.---..|++|+|+.+ .+.||.+-.||.|.||++... .-+...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.
T Consensus 22 d~~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eeeccceEEEEEecc-CCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 334578999999999 777999999999999999764 4455555554 46899999994 5578888899999999999
Q ss_pred CCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE--EeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 221 KGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH--EYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 221 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
+++.+..+. ..+.|++++.+|.+ ..++.|+.||.++.++...++... .+....+.|.++.|++++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 999999988 78899999999985 889999999988888888776543 34455689999999999999999998
Q ss_pred CcCCCCeEEEEeCCCCcccceee-------ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc
Q 013475 298 SNMSENSIVVWDVSREVPLSKQV-------YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
||.|++||...+..+.... .....-+.++.+- ....+++|...|.|.+||...+....... .+
T Consensus 175 ----Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~-----~h 244 (691)
T KOG2048|consen 175 ----DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHS-----CH 244 (691)
T ss_pred ----CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhh-----hh
Confidence 9999999999887665211 1123345666666 56689999999999999998876664433 23
Q ss_pred ccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee----eEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL----ERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
...|.+++..++++++++++.|+.|.-|...+++. ......|...|.+++..++ .|++||.|..+.+
T Consensus 245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAI 315 (691)
T ss_pred hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEE
Confidence 35589999999999999999999999998776532 2233467888999999876 7999999988765
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.4e-24 Score=193.34 Aligned_cols=297 Identities=20% Similarity=0.325 Sum_probs=228.8
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--------------------------------------
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-------------------------------------- 180 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------------------- 180 (442)
..+.||.+.|+++.|+|. +..|++++.|+++.+|.-.+..+
T Consensus 261 all~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 345699999999999999 88899999999999997532200
Q ss_pred ------------ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC-CCcEEEee---e-CCcceEEEEEccCC
Q 013475 181 ------------KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE-KGIETQSF---R-EELAVRVVKFHPEN 243 (442)
Q Consensus 181 ------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~---~-~~~~v~~~~~~~~~ 243 (442)
.....+.||.+.|.+++|.|.|.+|++.+.|.+-|++--- ....-..+ + |...++|++|-+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence 1222355799999999999999999999999999998765 22222222 2 8889999999985
Q ss_pred CCEEEEeeCCCcEEEEECC-------------------------------------------CCce--------------
Q 013475 244 SNLFLSGGSKGLLRLWDIR-------------------------------------------TGKV-------------- 266 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~-------------------------------------------~~~~-------------- 266 (442)
...|++|.....+++|+.. +|..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 4789999999999999871 0000
Q ss_pred -------------------EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccccee
Q 013475 267 -------------------AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTC 327 (442)
Q Consensus 267 -------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 327 (442)
++++.+|...|.+++.+|+|++++++.. ........|++|+..+-.... ....|...|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCK--S~~~ehAvI~lw~t~~W~~~~-~L~~HsLTV 575 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACK--SSLKEHAVIRLWNTANWLQVQ-ELEGHSLTV 575 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhh--hCCccceEEEEEeccchhhhh-eecccceEE
Confidence 0123467778999999999999999986 222235679999998876665 455677899
Q ss_pred eeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc-cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc--e
Q 013475 328 PCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD-KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS--E 404 (442)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~--~ 404 (442)
+.++|+|++++|++.+.|+++.+|......... .+.. ...|...|.++.|+|++.++++++.|.+|+||..... +
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~ 653 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK 653 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh
Confidence 999999999999999999999999875443321 1122 3455677999999999999999999999999998876 4
Q ss_pred eeEe--eeccCCceeEEEEcCCC----CCEEEEeeCCCcEEEcC
Q 013475 405 LERK--IKAYEQACIDVAFHPIL----PNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 405 ~~~~--~~~~~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd 442 (442)
.+.. ...+...|+.++|.|-. ..+++.|-..|.|.||.
T Consensus 654 ~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 654 YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 4433 23468899999997732 23778888999999984
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=3.6e-25 Score=191.57 Aligned_cols=238 Identities=16% Similarity=0.297 Sum_probs=204.4
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
..-|.++.++|| |+.|++|+.-.++.|||+..........+....-.++.++.+||.+..++|..||.|.|||+.+...
T Consensus 465 dnyiRSckL~pd-grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecCC-CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 457889999999 8999999999999999998776666666665556788999999999999999999999999999999
Q ss_pred EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 225 TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
++.|+ |...+.||.++++| ..|.+|+-|.+|+-||+++++.+.... ..+.|.++.++|++.+++.|-. ++
T Consensus 544 VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe-------ns 614 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME-------NS 614 (705)
T ss_pred eecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc-------cC
Confidence 99999 89999999999997 788999999999999999987765543 2368999999999999999998 88
Q ss_pred eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG 383 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 383 (442)
.+-+..... ..+.....+..-|.++.|.+.|+++++.+.|+.+..|..--+..+... .....|+++.+|.|.
T Consensus 615 ~vevlh~sk--p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs------kE~SsVlsCDIS~dd 686 (705)
T KOG0639|consen 615 NVEVLHTSK--PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------KESSSVLSCDISFDD 686 (705)
T ss_pred cEEEEecCC--ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec------cccCcceeeeeccCc
Confidence 887776654 344556677888999999999999999999999999998766544322 234668999999999
Q ss_pred CEEEEecCCCcEEEEec
Q 013475 384 EKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 384 ~~l~~g~~dg~i~iwd~ 400 (442)
+||++|+.|..-.||.+
T Consensus 687 kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 687 KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eEEEecCCCcceEEEEE
Confidence 99999999998888865
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=178.46 Aligned_cols=250 Identities=16% Similarity=0.247 Sum_probs=188.1
Q ss_pred cceecccccccceEEEEeeCCC-CCEEEEecCCCcEEEEEccc--------------CCcceeeeeccCCCceeEEEeCC
Q 013475 136 RLSTALCHHTKAVNSINWSPTH-AHLLASAGMDQSICIWNVWS--------------RDQKLARVLNFHSAAVNDVKWSQ 200 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~-~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~h~~~v~~l~~~~ 200 (442)
......-+|.+.|+-+.-++-+ ..+.++-+..|.|.||++.. .....+.++.+|...=+.|+|||
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 3344455788999999888862 45667778899999999831 23467788889999999999999
Q ss_pred -CCCEEEEEecCCcEEEEECCCCcEEEe----eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc--eEEEeccC
Q 013475 201 -QGLFVLSCGYDCSSRLVDVEKGIETQS----FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK--VAHEYIQS 273 (442)
Q Consensus 201 -~~~~l~s~~~d~~v~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~ 273 (442)
....|++|..-+.|++|...++.-..- ..|...|..++|+|....+|++|+-||+|+|||+|.+. .....+.|
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH 301 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence 233588888888999999988754322 22889999999999999999999999999999999873 22334889
Q ss_pred CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeC
Q 013475 274 LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~ 353 (442)
.+.|+-|.|+..-.+|++|++ ||+++|||++..+.-. +
T Consensus 302 ~sDVNVISWnr~~~lLasG~D-------dGt~~iwDLR~~~~~~--------p--------------------------- 339 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGD-------DGTLSIWDLRQFKSGQ--------P--------------------------- 339 (440)
T ss_pred CCceeeEEccCCcceeeecCC-------CceEEEEEhhhccCCC--------c---------------------------
Confidence 999999999998889999999 9999999999743220 0
Q ss_pred CCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCce----------------eeEeeecc--CC
Q 013475 354 TPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSE----------------LERKIKAY--EQ 414 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~----------------~~~~~~~~--~~ 414 (442)
+..+..| ...|+++.|+| +...|++++.|..|.|||+.... +.+.+--| ..
T Consensus 340 --------VA~fk~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk 409 (440)
T KOG0302|consen 340 --------VATFKYH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK 409 (440)
T ss_pred --------ceeEEec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh
Confidence 1223333 25577888887 34567777778888888874211 11122234 45
Q ss_pred ceeEEEEcCCCCCEEEEeeCCCc
Q 013475 415 ACIDVAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 415 ~v~~~~~~p~~~~~l~s~~~dg~ 437 (442)
.+..+.|++.-+-+|++.+.||.
T Consensus 410 e~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 410 EVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred HhhhheeccCCCCeEEEecccce
Confidence 78899999998889999999984
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=7e-24 Score=190.44 Aligned_cols=297 Identities=16% Similarity=0.158 Sum_probs=219.0
Q ss_pred CCcceecccccccceEEEEeeCCCCC---EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAH---LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY 210 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 210 (442)
....+.++.||.+.|+|+.|-|+ .+ ++++|+.|+.|.+|.++......+..+.+|...+.|+. .....+...+.
T Consensus 43 k~~i~t~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a~~~~~~~~~a 119 (764)
T KOG1063|consen 43 KILIVTTLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--ARSSVMTCKAA 119 (764)
T ss_pred cceeEEeccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--eeeeEEEeecc
Confidence 34567889999999999999998 55 79999999999999998665677777887766666554 22222323367
Q ss_pred CCcEEEEECCCCc--EEEeee---CCcceEEEEEccC-CCCEEEEeeCCCcEEEEECCCC--ceEEEeccCCCCEeEEEE
Q 013475 211 DCSSRLVDVEKGI--ETQSFR---EELAVRVVKFHPE-NSNLFLSGGSKGLLRLWDIRTG--KVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 211 d~~v~vwd~~~~~--~~~~~~---~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~ 282 (442)
|+.+.+||.+..+ +...+. ...-..|+++.++ +..+++.|+.+..|.++.-... +.+..+.+|...|.+++|
T Consensus 120 d~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f 199 (764)
T KOG1063|consen 120 DGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAF 199 (764)
T ss_pred CceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhh
Confidence 9999999996555 223333 2223456666663 3445666777778888865533 467788999999999999
Q ss_pred eeCCC---EEEeccCCCCCcCCCCeEEEEeCCCCccc------------------------c------eeeccccceeee
Q 013475 283 TINGK---QFVSSSDVSGSNMSENSIVVWDVSREVPL------------------------S------KQVYVEAYTCPC 329 (442)
Q Consensus 283 ~~~~~---~l~~~~~~~~~~~~d~~i~iwd~~~~~~~------------------------~------~~~~~~~~~~~~ 329 (442)
...+. +|++++. |..|+||.+.-.... . .....|...+.+
T Consensus 200 ~~~~~~~~~laS~SQ-------D~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 200 ARLGGDDLLLASSSQ-------DRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS 272 (764)
T ss_pred hccCCCcEEEEecCC-------ceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence 87544 6777887 999999987533200 0 112356778999
Q ss_pred EEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec--ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc---e
Q 013475 330 VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH--GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS---E 404 (442)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~---~ 404 (442)
+.|+|.+..|++++.|+++.+|......-++.-....+. +..+......|+++++.|++-+.-|..++|..... .
T Consensus 273 v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWT 352 (764)
T ss_pred EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcccee
Confidence 999999999999999999999998776443322111111 22344678899999999999999999999983321 3
Q ss_pred eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 405 LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
....+.+|-+.|.+++|+|.| .+|++.|.|.+-|||
T Consensus 353 ~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLF 388 (764)
T ss_pred eccccccccccceeeeecCCC-CEEEEeccccceeee
Confidence 344567899999999999999 799999999998886
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=194.93 Aligned_cols=243 Identities=16% Similarity=0.252 Sum_probs=202.6
Q ss_pred cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC-cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc
Q 013475 188 FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG-IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK 265 (442)
Q Consensus 188 ~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (442)
.|+..-+.|+|.++|.+|++|+.||.|++|+.... +.-..+. +...|.+++.. .++|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCCC
Confidence 48888999999999999999999999999998766 4444555 67778777765 3589999999999999998887
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
.-..+....-++++++|+.+|++++.|+. |-.|++.++...... .....+..++.++.++|.+.+|++.+.|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsd-------D~~vK~~~~~D~s~~-~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSD-------DTAVKLLNLDDSSQE-KVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecC-------ceeEEEEeccccchh-eeecccCCceeeeeEcCCCCEEEEEecC
Confidence 65455555678999999999999999998 999999999876554 4455677899999999999999999999
Q ss_pred CeEEEeeCCCCcccccceeEeec---ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec--cCCceeEEE
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESH---GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA--YEQACIDVA 420 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 420 (442)
|.|++|++.++.....+...... .....+..++|+|+|..|+..+.|+.|++|+..+++....+.. +...+.+++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999999987665443332211 1134567899999988898889999999999999988777753 345599999
Q ss_pred EcCCCCCEEEEeeCCCcEEEcC
Q 013475 421 FHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+|+| .|||+++.||.|.|||
T Consensus 240 wsPnG-~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 240 WSPNG-KYIAASTLDGQILVWN 260 (933)
T ss_pred EcCCC-cEEeeeccCCcEEEEe
Confidence 99998 8999999999999997
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.8e-24 Score=193.04 Aligned_cols=240 Identities=14% Similarity=0.203 Sum_probs=200.5
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe--ee-CCcceEE-EEEccCCCCEEEEeeCCCc
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS--FR-EELAVRV-VKFHPENSNLFLSGGSKGL 255 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~-~~~~v~~-~~~~~~~~~~l~~~~~dg~ 255 (442)
.++...+.+|...|..+++... ..+++++.||++++|+-..++.+.. +. +.+-|.. ++|.+.+...+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 4667889999999999987755 4799999999999999877665542 33 5565655 7887644467999999999
Q ss_pred EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC
Q 013475 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF 335 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (442)
|.+|.+....++..+++|...|.++....++. +++++. |.++++|-...-. .....|...+..+..-|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW-------D~TakvW~~~~l~---~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW-------DSTAKVWRIGELV---YSLQGHTASVWAVASLPE 151 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc-------ccceEEecchhhh---cccCCcchheeeeeecCC
Confidence 99999999999999999999999999887777 899998 9999999876432 235677888999999998
Q ss_pred CCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCc
Q 013475 336 DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQA 415 (442)
Q Consensus 336 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 415 (442)
+ .+++|+.|+.|++|.-... ++.+.+| ...|..+++-+++ .|++++.||.|++|++ +|+++.++.+|...
T Consensus 152 ~-~~vTgsaDKtIklWk~~~~-----l~tf~gH--tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~ 221 (745)
T KOG0301|consen 152 N-TYVTGSADKTIKLWKGGTL-----LKTFSGH--TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF 221 (745)
T ss_pred C-cEEeccCcceeeeccCCch-----hhhhccc--hhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceE
Confidence 8 8999999999999987543 2556654 4778899887764 6888999999999998 79999999999999
Q ss_pred eeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 416 CIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.++....++ ..++++|+|++++||+
T Consensus 222 vYsis~~~~~-~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 222 VYSISMALSD-GLIVSTGEDRTLRIWK 247 (745)
T ss_pred EEEEEecCCC-CeEEEecCCceEEEee
Confidence 9999966555 5999999999999995
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.4e-25 Score=209.87 Aligned_cols=281 Identities=22% Similarity=0.344 Sum_probs=216.2
Q ss_pred EEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCc----ceeeeeccCCCceeEEEeCCCCCE----EEEEec
Q 013475 149 NSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQ----KLARVLNFHSAAVNDVKWSQQGLF----VLSCGY 210 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~----l~s~~~ 210 (442)
-.++|+|++-.++++|. .+.++.||.+..... +.+..+. .....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 35789998433666553 355667776643322 3344444 4577899999986655 888889
Q ss_pred CCcEEEEECCC---Cc---EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec--cCCCCEeEEE
Q 013475 211 DCSSRLVDVEK---GI---ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI--QSLGPILDVE 281 (442)
Q Consensus 211 d~~v~vwd~~~---~~---~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~ 281 (442)
||.|.+||... +. .+..+. |.+.|..+.|++...++|++|+.||.|.|||+++-+.-..+. ...+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999876 22 223333 899999999999988899999999999999998755444432 2456899999
Q ss_pred EeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc-ceeeeEEecCCCC-eeEEEeCC---CeEEEeeCCC
Q 013475 282 FTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA-YTCPCVRHHPFDP-YFVAQSNG---NYIAIFSSTP 355 (442)
Q Consensus 282 ~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~---~~i~i~~~~~ 355 (442)
|+.. .+.|++++. +|++.|||++..+.+..+..... ..+..+.|+|+.. .+++++.| -.|.+||++.
T Consensus 169 WNrkvqhILAS~s~-------sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 169 WNRKVSHILASGSP-------SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred cchhhhHHhhccCC-------CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 9875 456677776 89999999999887766665544 5588999999875 45555554 3699999876
Q ss_pred CcccccceeEeecccccCcEEEEEccCC-CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 356 PFRLDKFKRYESHGVSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
.... ++.+++| ...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+......+..+.|+|..+.+++.++.
T Consensus 242 assP--~k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 242 ASSP--LKILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred cCCc--hhhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee
Confidence 5433 2444444 4668999999965 899999999999999999999999999888999999999999889999999
Q ss_pred CCcEEEc
Q 013475 435 NGDVSVY 441 (442)
Q Consensus 435 dg~i~iw 441 (442)
||.|.||
T Consensus 318 dgkI~I~ 324 (1049)
T KOG0307|consen 318 DGKISIY 324 (1049)
T ss_pred ccceeee
Confidence 9999987
No 141
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=176.86 Aligned_cols=291 Identities=16% Similarity=0.130 Sum_probs=221.8
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC----Ccceeeeec-cCCCceeEEEeCCCCCEEEEEecC
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR----DQKLARVLN-FHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
+.+-+.+|.+.|+++.|+.+ +++|++|+.|..++||+++.. ..+++.... .|...|.|++|...+.+|++|+.+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 44567899999999999999 999999999999999998421 223444333 355899999999999999999999
Q ss_pred CcEEEEECCCCcEEEeeeCCc---ceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-e--EEEeccCCCCEeEEEEeeC
Q 013475 212 CSSRLVDVEKGIETQSFREEL---AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-V--AHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~~i~~~~~~~~ 285 (442)
++|.+.|+++.+.+..+.+.. .|..+..+|. .+.|++.+.++.|.+||.+... . ...+.........+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999999999988654 8999999999 4999999999999999998754 2 2222333456778889996
Q ss_pred C-CEEEeccCCCCCcCCCCeEEEEeCCCCcccc-eee-----ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 286 G-KQFVSSSDVSGSNMSENSIVVWDVSREVPLS-KQV-----YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 286 ~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
. .+|++.+. .+.+.+||++...... +.. ..+......+.|+|.|..|++.-....-.+||+....+
T Consensus 206 ~P~Li~~~~~-------~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 206 TPALILVNSE-------TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CceeEEeccc-------cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 5 55666666 8899999998754221 111 11123346789999999999988888888888776433
Q ss_pred cccceeEeeccc-----ccCcEEEEEccCCCEEEEecCCCcEEEEecCCc-----------------------eeeEeee
Q 013475 359 LDKFKRYESHGV-----SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS-----------------------ELERKIK 410 (442)
Q Consensus 359 ~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-----------------------~~~~~~~ 410 (442)
.. ....|.. ...+.+++|.-|. .+++|+.+-.|++|.+... +.+..++
T Consensus 279 ~V---~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 279 FV---LKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred ee---EeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 21 0111122 2234567776554 4999999999999987521 2345678
Q ss_pred ccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 411 AYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 411 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+|..-++.+.|+|.. ++|++.+-.+.++||
T Consensus 355 GHRSv~NQVRF~~H~-~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHN-NLLVSSGVENSFKLW 384 (609)
T ss_pred cccccccceeecCCc-ceEeccchhhheecc
Confidence 999999999999998 799999999999999
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-23 Score=168.04 Aligned_cols=275 Identities=16% Similarity=0.279 Sum_probs=199.6
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc--CCcceeeeeccCCCceeEEEeCC--CCCEEEEEecCCcEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--RDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~v~vw 217 (442)
.+|.+-|+|+.|.+. |+.+|+|+.|++|+|||... ++..+....+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 479999999999999 99999999999999999743 34567777889999999999976 58999999999999999
Q ss_pred ECCCC---------cEEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCc------eEEEec-------cC
Q 013475 218 DVEKG---------IETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGK------VAHEYI-------QS 273 (442)
Q Consensus 218 d~~~~---------~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~~-------~~ 273 (442)
.-... ....++. ....|+.++|.|.. +-.+++++.||.++||+.-.-- ..+++. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75211 1222333 67889999999863 3678899999999999875432 223333 35
Q ss_pred CCCEeEEEEeeC---CCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccce--eeccccceeeeEEecCCC----CeeEEEe
Q 013475 274 LGPILDVEFTIN---GKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSK--QVYVEAYTCPCVRHHPFD----PYFVAQS 343 (442)
Q Consensus 274 ~~~i~~~~~~~~---~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~~~----~~l~~~~ 343 (442)
..+..|+.|++. ..+|+.|+.. ....-+.++||...... .... ....+...|..++|.|+- ..+++++
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e--~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDE--DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cCcceEEeeccccccCceEEEEccc--CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 567889999874 4678888851 11113589999876644 2111 223667789999999964 3678899
Q ss_pred CCCeEEEeeCCCCc-----------------ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC---c
Q 013475 344 NGNYIAIFSSTPPF-----------------RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS---S 403 (442)
Q Consensus 344 ~~~~i~i~~~~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~---~ 403 (442)
.|| |+||.+.... .+..+.. ...|.+.|..+.|+-.|..|++.+.||.|++|...- .
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~--~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE--LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee--ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 999 9999987311 1112222 234567899999999999999999999999997542 3
Q ss_pred eeeEeeeccCCceeEEEEcC
Q 013475 404 ELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 404 ~~~~~~~~~~~~v~~~~~~p 423 (442)
++...++. ++.+....|++
T Consensus 324 kC~sv~~~-e~~~~~~~~~~ 342 (361)
T KOG2445|consen 324 KCTSVLKA-EGSVTKPDFSQ 342 (361)
T ss_pred eeeeEEec-cCCCCCccccc
Confidence 45555553 34444444543
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.1e-23 Score=186.21 Aligned_cols=249 Identities=20% Similarity=0.254 Sum_probs=199.0
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWD 260 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 260 (442)
.+...+.+|++.|.+|...+.|.+|++|+.||+|+||.+.+|.|++.+...+.|.|++|+|.+..-+++......+.|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 45567889999999999999999999999999999999999999999999999999999998755555544444455544
Q ss_pred CCCC-------------------------------------ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 261 IRTG-------------------------------------KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 261 ~~~~-------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
..-| .-+.....|...|..+.|+..|.||++..... ...
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~----~~~ 546 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS----GNK 546 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC----Ccc
Confidence 3211 00123345677899999999999999876511 157
Q ss_pred eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG 383 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 383 (442)
.|.|+++.......- .....+.+.++.|+|...+|++++ ...|++||+.......++.. ....+..++.+|.|
T Consensus 547 ~VliHQLSK~~sQ~P-F~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~t-----g~kwiS~msihp~G 619 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSP-FRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLT-----GSKWISSMSIHPNG 619 (733)
T ss_pred eEEEEecccccccCc-hhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhc-----CCeeeeeeeecCCC
Confidence 899999987654422 223456789999999999998875 56899999988655544332 23457889999999
Q ss_pred CEEEEecCCCcEEEEecCCc-eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 384 EKLVSGSSDGSIYFYNCRSS-ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 384 ~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
..|+.|+.|+.+..||+.-. ++.+++..|...+++|+|++.. -+|++|+.||++.|+
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVF 677 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEE
Confidence 99999999999999999754 6788899999999999999999 599999999999886
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=6.2e-24 Score=183.75 Aligned_cols=263 Identities=19% Similarity=0.254 Sum_probs=207.9
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
.|.++.|+..+.-.+++.+.|+.|++|.-..... ..+....+ ..-.|++......|+++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 4899999987323344556788999998533211 22222222 2344555555568999999999999999997777
Q ss_pred EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-CEeEEEEeeCCCEE-EeccCCCCCcCC
Q 013475 225 TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-PILDVEFTINGKQF-VSSSDVSGSNMS 301 (442)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~~~~~~~~~~~~ 301 (442)
.+.++ |...|+++.++-.+ .+|++++..|.|.|..+.++.....|....+ .|.-+.|++..+.+ .++++
T Consensus 114 hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd------- 185 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD------- 185 (673)
T ss_pred hhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc-------
Confidence 77777 89999999999875 8999999999999999999888777766544 56689999977654 55666
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
+|.|.+||+....++......|..++..++|+|... +|++.+.|..|.+||.........+ ........++|+
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l------~y~~Plstvaf~ 259 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL------TYSHPLSTVAFS 259 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee------eecCCcceeeec
Confidence 999999999999999899899999999999999776 5566899999999999865443221 122446789999
Q ss_pred cCCCEEEEecCCCcEEEEecCCc-eeeEeeeccCCceeEEEEcCCC
Q 013475 381 LDGEKLVSGSSDGSIYFYNCRSS-ELERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~ 425 (442)
++|.+|++|...|.|+.||++.. .++..+..|...|++++|.+..
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999864 5788889999999999998873
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=180.63 Aligned_cols=252 Identities=13% Similarity=0.225 Sum_probs=202.5
Q ss_pred eecccccccceEEEEeeCCCCC-EEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEeCCCCCEEEEEecCCcEE
Q 013475 138 STALCHHTKAVNSINWSPTHAH-LLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
++.+.--..+|.+.+|.|+ |. .+++++....++.||+.+.+...+....++. ..+.....++++++|+..+..|.|.
T Consensus 250 lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred heeeeeccCccceeeecCC-CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 3444445678999999999 55 9999999999999999777666565555555 4567788899999999999999999
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-CEeEEEEeeCCCEEEeccC
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-PILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~ 294 (442)
+....+++.+..++..+.|..++|+.++ ..|++++.+|.|++||++...+++.+....+ .-++++.+.++.+|++|+.
T Consensus 329 lLhakT~eli~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 329 LLHAKTKELITSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred eehhhhhhhhheeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 9999999999999999999999999986 7777788889999999999999988875422 3356778899999999998
Q ss_pred CCCCcCCCCeEEEEeCCC------CcccceeeccccceeeeEEecCCCCeeEEEeC--CCeEEEeeCCCCcccccceeEe
Q 013475 295 VSGSNMSENSIVVWDVSR------EVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN--GNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
.|.|.|||..+ .+++..+ ..-...|.++.|+++.+.|+.++. .+.+++..+-+......+...
T Consensus 408 -------~GiVNIYd~~s~~~s~~PkPik~~-dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~- 478 (514)
T KOG2055|consen 408 -------SGIVNIYDGNSCFASTNPKPIKTV-DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS- 478 (514)
T ss_pred -------cceEEEeccchhhccCCCCchhhh-hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-
Confidence 99999999765 2223222 223457999999999999988775 467888776655444333332
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
...-+.+++++|||.|.+||.|..+|.+.+|.+.
T Consensus 479 -n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 -NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2233679999999999999999999999999874
No 146
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-24 Score=186.01 Aligned_cols=296 Identities=19% Similarity=0.241 Sum_probs=236.9
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--CCCEEEEEecCCc
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCS 213 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~ 213 (442)
.+...|.+|.+.|+.|.|+.. |..|++|+.|..|.+||+... ........+|...|..-.|.| +.+.+++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~-~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSG-SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhcc-CcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 455678899999999999999 999999999999999999665 334445567999999999988 4678999999999
Q ss_pred EEEEECCCCcE-E---EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCC---CEeEEEEe
Q 013475 214 SRLVDVEKGIE-T---QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLG---PILDVEFT 283 (442)
Q Consensus 214 v~vwd~~~~~~-~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~---~i~~~~~~ 283 (442)
|++=.+..... . ...+|.+.|..++.-|+..+-|.+++.|+.+.-+|++.+.....+ ..+.. ....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99987754332 2 233499999999999998899999999999999999987543333 22222 45678888
Q ss_pred eCCC-EEEeccCCCCCcCCCCeEEEEeCCCCccc------ce-----eeccccceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 284 INGK-QFVSSSDVSGSNMSENSIVVWDVSREVPL------SK-----QVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 284 ~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
|... .+++++. |..+++||.+.-... .+ ........|+++.++.++.-+++...|-.|++|
T Consensus 291 P~nt~~faVgG~-------dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 291 PRNTNEFAVGGS-------DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred CCCccccccCCh-------hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 8654 7888887 999999998763211 11 222345679999999999999999999999999
Q ss_pred eCCCCcc----------cccceeEeecccccCcEEEEE-ccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEE
Q 013475 352 SSTPPFR----------LDKFKRYESHGVSGFPIKCSF-SLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVA 420 (442)
Q Consensus 352 ~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 420 (442)
....+.- ......+++|.....|..+-| -|...|+++|+..|.|.||+-.+++.+..+.+...-|+||.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence 6543322 111233788887777887754 67889999999999999999999999999998777999999
Q ss_pred EcCCCCCEEEEeeCCCcEEEc
Q 013475 421 FHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iw 441 (442)
-+|.-+ +||++|-|..|+||
T Consensus 444 pHP~~P-vLAsSGid~DVKIW 463 (559)
T KOG1334|consen 444 PHPHLP-VLASSGIDHDVKIW 463 (559)
T ss_pred CCCCCc-hhhccCCccceeee
Confidence 999995 99999999999999
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=6.6e-23 Score=168.33 Aligned_cols=273 Identities=19% Similarity=0.248 Sum_probs=205.3
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCC------------cceeeeeccCCCceeEEEeC-------CCCCEEEEE
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRD------------QKLARVLNFHSAAVNDVKWS-------QQGLFVLSC 208 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~l~~~-------~~~~~l~s~ 208 (442)
...+.|+|| |..|++-+.|..+++|++-... ......+. ....|+..+|. |+..++++.
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeec
Confidence 346889999 8999999999999999983210 01111111 34678888886 567899999
Q ss_pred ecCCcEEEEECCCCcEEEeee---CC---cceEEEEEccCCCCEEEEeeCCCcEEEEEC-CCCceEE--Ee-----ccCC
Q 013475 209 GYDCSSRLVDVEKGIETQSFR---EE---LAVRVVKFHPENSNLFLSGGSKGLLRLWDI-RTGKVAH--EY-----IQSL 274 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~--~~-----~~~~ 274 (442)
+.+.-|++||.-+|+....+. |. ....+++|+||| ..|++|. ...|++||+ +.|+... .. .+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999999999887776 33 345789999998 6666655 568999999 5554221 11 1235
Q ss_pred CCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC-CCeEEEee
Q 013475 275 GPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN-GNYIAIFS 352 (442)
Q Consensus 275 ~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~i~i~~ 352 (442)
+-|.+++|+|-. +.++.++. ..++-||.-....++... ..+...|+.+.|+++|+.|++|.. +..|..||
T Consensus 208 giisc~a~sP~~~~~~a~gsY-------~q~~giy~~~~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSY-------GQRVGIYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred ceeeeeeccCCCCcceeeecc-------cceeeeEecCCCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 678899999954 58888888 888888887777666544 478889999999999999999765 77999999
Q ss_pred CCCCcccccceeEeeccc-ccCcEEEEEccCCCEEEEecCCCcEEEEecCC-ceeeEeeeccCCceeEEEEcCCCCCEEE
Q 013475 353 STPPFRLDKFKRYESHGV-SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS-SELERKIKAYEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 430 (442)
++...... -.+..|.. ...-.-....|+|++|++|+.||.|++||+++ ++.+..+..|+..|+.++++|-- .+++
T Consensus 280 iR~~~~pv--~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pila 356 (406)
T KOG2919|consen 280 IRYSRDPV--YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILA 356 (406)
T ss_pred ehhccchh--hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceee
Confidence 98754331 22222221 12223456678999999999999999999998 77788888899999999999997 4888
Q ss_pred EeeCC
Q 013475 431 SCSWN 435 (442)
Q Consensus 431 s~~~d 435 (442)
+++..
T Consensus 357 tssGq 361 (406)
T KOG2919|consen 357 TSSGQ 361 (406)
T ss_pred eccCc
Confidence 87643
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=185.92 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=213.8
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 226 (442)
.|+.++|-|| |..|+.+. +..+.|||. .++.+..++++|...|+|++|+.||+.+++|+.|..|.+|+-.- +-+.
T Consensus 14 ci~d~afkPD-GsqL~lAA-g~rlliyD~--ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAA-GSRLLVYDT--SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL 88 (1081)
T ss_pred chheeEECCC-CceEEEec-CCEEEEEeC--CCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee
Confidence 8999999999 55555554 348999999 45588999999999999999999999999999999999998543 3345
Q ss_pred eeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEE
Q 013475 227 SFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIV 306 (442)
Q Consensus 227 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 306 (442)
.+.|...|.|+.|+|-. ..|++++-. ..-+|....... ...+ ....|.+++|..||.+|+.|-. +|+|.
T Consensus 89 kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~-------nGTIs 157 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMF-------NGTIS 157 (1081)
T ss_pred eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEecc-------CceEE
Confidence 66799999999999984 788887764 467887654322 2211 2357899999999999999998 99999
Q ss_pred EEeCCCCccccee-eccccceeeeEEecCCC-----CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 307 VWDVSREVPLSKQ-VYVEAYTCPCVRHHPFD-----PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 307 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
+-+-......... ......++.+++|+|.. ..+++...+.++.+|.+.+...-. .....-...++.+-
T Consensus 158 iRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk------~r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 158 IRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK------DRALNFDPCCISYF 231 (1081)
T ss_pred eecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc------cccCCCCchhheec
Confidence 9876544333222 22356789999999964 467888888899998887643211 11112335688999
Q ss_pred cCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 381 LDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++|.|++.|+.|+.+++|. +.|-.+.++......|+.++..|++ +.++.|+.||+|.-||
T Consensus 232 ~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYN 291 (1081)
T ss_pred cCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhh
Confidence 9999999999999999997 4577788887788999999999999 7999999999997764
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=7e-24 Score=188.71 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=109.5
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce----eeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL----ARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
+-+..|.+|.+.|+.+.|+|-...+||+|+.|..|+||.+..+-... ...+.+..-.|.++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 45677899999999999999767899999999999999996332221 22344445578899999965555555668
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-CceEEEeccC
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKVAHEYIQS 273 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 273 (442)
|+++|||+.+++.+..+. |...|.+..|+.|| .++++.+.|..|+|||.+. ++.++...+|
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccCCCcccccccc
Confidence 999999999999988887 89999999999997 8999999999999999874 3444444443
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-22 Score=180.69 Aligned_cols=242 Identities=12% Similarity=0.161 Sum_probs=202.3
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe-ee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS-FR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK 265 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (442)
....|.+|+|+.+.+.||.+-.||.|.+|++..+-.... +. ....|.+++|.+. ..|++.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCc
Confidence 457899999999999999999999999999998644333 22 5678999999964 578888999999999999999
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-cceeeeEEecCCCCeeEEEeC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-AYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 344 (442)
+...+....+.|.+++.+|.+..++.+++ ||.+.+++...++......... ..++.++.|++++..++.|+.
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~Igcd-------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCD-------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecC-------CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 99999999999999999999999999998 9988888888877665554443 489999999999999999999
Q ss_pred CCeEEEeeCCCCcccccce--eEeecc-cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEE
Q 013475 345 GNYIAIFSSTPPFRLDKFK--RYESHG-VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF 421 (442)
Q Consensus 345 ~~~i~i~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 421 (442)
|+.|++||...+....... ...... ....|+++.|-.+ ..|++|++.|+|.+||...+.+++.+..|...|.+++.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 9999999999876654111 001111 2234666766645 48999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEeeCCCcEEEc
Q 013475 422 HPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 422 ~p~~~~~l~s~~~dg~i~iw 441 (442)
.+++ ..++++|.|+.|.-|
T Consensus 254 ~~~~-d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 254 ADNE-DRVFSAGVDPKIIQY 272 (691)
T ss_pred cCCC-CeEEEccCCCceEEE
Confidence 9998 799999999987643
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-22 Score=171.85 Aligned_cols=282 Identities=19% Similarity=0.225 Sum_probs=203.5
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-------cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-------QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
..+|..+.|.++..+.|+||+.|..|+||.++... ......+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999856599999999999999985332 23456778899999999999999999999999999999
Q ss_pred ECC--------C-----C---cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEE
Q 013475 218 DVE--------K-----G---IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 218 d~~--------~-----~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 280 (442)
-.. + . ...+.+. |...+..++|++++ .++++++.|..+++||+..|+....+..|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 876 2 1 1122233 78899999999996 999999999999999999999999999999999999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee------------------ccc----cceeeeEEecCCCCe
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV------------------YVE----AYTCPCVRHHPFDPY 338 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------------------~~~----~~~~~~~~~~~~~~~ 338 (442)
+|.|-++++++-+. |...+.+++.....+.... ..+ ..-...++|+|+|..
T Consensus 172 awDpl~qyv~s~s~-------dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 172 AWDPLNQYVASKSS-------DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ecchhhhhhhhhcc-------CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 99999999999887 7767776665433222211 000 112345678999999
Q ss_pred eEEEeC---------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEc------------------cCCCEEEEecC
Q 013475 339 FVAQSN---------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS------------------LDGEKLVSGSS 391 (442)
Q Consensus 339 l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------------------~~g~~l~~g~~ 391 (442)
+++... -+..++|+-....+. .............+.|+ |-+..++.++
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP----~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt- 319 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRP----AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT- 319 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCc----eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence 887321 234455554422211 00001111111222222 2233444555
Q ss_pred CCcEEEEecCCceeeEeee-ccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 392 DGSIYFYNCRSSELERKIK-AYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 392 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.+.|+|||.++-+++..+. -|-..|++++|+++| .+|+..+.||...+
T Consensus 320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEeccccccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEE
Confidence 4579999999877776554 578899999999999 78888889987543
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.1e-25 Score=198.58 Aligned_cols=199 Identities=20% Similarity=0.383 Sum_probs=179.6
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
.+..|.+|.++|.+|.|+.+ ..+|+.|+.+|+|++||++ ..+.++++.+|...+..+.|+|-+.+++.++.|+.+++
T Consensus 62 ~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDle--eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLE--EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred hhheeeccCCcceeeecCcc-hhhhcccccCCceeeeehh--hhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 34458999999999999999 8899999999999999995 45888899999999999999999999999999999999
Q ss_pred EECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 217 VDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 217 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
||++...|...++ |...+.++.|+|+| .+++.|++|..+++||+..|+...+|..|.+.+.++.|+|..-.++.|+.
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~- 216 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS- 216 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC-
Confidence 9999888888888 88889999999996 89999999999999999999999999999999999999999999999998
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCe
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY 347 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (442)
|+++++||+++...+..... ....+.+..|++++..+++|.....
T Consensus 217 ------d~tv~f~dletfe~I~s~~~-~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 217 ------DRTVRFWDLETFEVISSGKP-ETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ------CceeeeeccceeEEeeccCC-ccCCceeeeecCCceeeecCchhhh
Confidence 99999999998665544433 3668999999999999988766543
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-23 Score=179.15 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=200.4
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE--ecCCcEEEEECCCC--cEE-EeeeCCcceEEEEEccC
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC--GYDCSSRLVDVEKG--IET-QSFREELAVRVVKFHPE 242 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~~d~~v~vwd~~~~--~~~-~~~~~~~~v~~~~~~~~ 242 (442)
..++|||+...+......-......+.++.|+.... |+++ +.|..|++|.-... +.. ........-.|+.....
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~ 90 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ 90 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc
Confidence 479999995543322211111223489999987654 5444 44788899975443 111 11113335566666555
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc
Q 013475 243 NSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV 322 (442)
Q Consensus 243 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 322 (442)
..++++|+..+.|+|||++...+.+.+++|...|+++.++-...+|++++. .|.|.|..+.++.....+...
T Consensus 91 -S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~-------gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 91 -SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD-------GGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred -ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc-------CCcEEEEecccCccccceecC
Confidence 488999999999999999977777888999999999999999999999998 999999999998877777777
Q ss_pred ccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEec
Q 013475 323 EAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~ 400 (442)
....+.-+.+++..++++. ++.+|.|.+||.........+. ..|......++|+| +..+|++.+.|..|++||.
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh----hhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 7778889999998887665 8889999999999876543322 23456677899999 5678889999999999999
Q ss_pred CCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 401 RSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+....+. .+.+...++|.++| .+|+.|...|.|..||
T Consensus 239 ~s~~s~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 239 RSQASTDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYD 278 (673)
T ss_pred ccccccceee-ecCCcceeeecCCc-eEEEeecCCceEEEEe
Confidence 9877776665 47789999999999 8999999999999987
No 154
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=165.69 Aligned_cols=224 Identities=21% Similarity=0.309 Sum_probs=170.1
Q ss_pred CcceecccccccceEEEEeeCCCCC--EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAH--LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
.+.+..+-.|.+.|+++.|.+. -. .|++|+.||.|.+|+. +...++..+++|.+.|+.++.+|.+++-++.+.|+
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~-~S~shLlS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~ 149 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPP-LSKSHLLSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ 149 (362)
T ss_pred hhhhcceeccccceEEEEecCC-cchhheeeecCCCcEEEEEc--CCeEEeeeecccccccceeEecCCCceEEEEcCCc
Confidence 4556677889999999999987 43 7899999999999999 77899999999999999999999999999999999
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (442)
.+++||+-+|+.-....-....+.+.|+|.| .+|+.++.+ .|-+|.+.+......+... ..+.++.|. ++..|++|
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG 225 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVG 225 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEe
Confidence 9999999999887777766666779999997 666666654 6999999876655444333 567777776 66778888
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccccc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSG 372 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
.+ |+.|.+||.....+...+. .|. .
T Consensus 226 ~d-------~~~i~~~D~ds~~~~~~~~-AH~-----------------------------------------------~ 250 (362)
T KOG0294|consen 226 GD-------NEWISLKDTDSDTPLTEFL-AHE-----------------------------------------------N 250 (362)
T ss_pred cC-------CceEEEeccCCCccceeee-cch-----------------------------------------------h
Confidence 87 9999999988754432221 222 2
Q ss_pred CcEEEE--EccCCCEEEEecCCCcEEEEecCCc-----eeeEeeeccCCceeEEEE
Q 013475 373 FPIKCS--FSLDGEKLVSGSSDGSIYFYNCRSS-----ELERKIKAYEQACIDVAF 421 (442)
Q Consensus 373 ~v~~~~--~s~~g~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~ 421 (442)
.|..+. -.|++.||++.++||.|+|||++.. +++..+.. ...++|+..
T Consensus 251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred heeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 233333 2346678888888888888887754 34444443 455566544
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.5e-23 Score=176.14 Aligned_cols=238 Identities=17% Similarity=0.217 Sum_probs=180.9
Q ss_pred CCEEEEecCCCcEEEEEcccCCc-------------------ceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQ-------------------KLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLV 217 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~-------------------~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vw 217 (442)
|+|+|.|+.|..|.|||+.-.+. +.-..-.+|+..|..|+|+.. .+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999999842211 011112369999999999884 5689999999999999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCC-CEEEeccCC
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTING-KQFVSSSDV 295 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~ 295 (442)
|+.++++...+. |...|.++.|+|....+|++|+.|++|.+.|.|........-...+.|-.+.|.+.. ..++++..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td- 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD- 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC-
Confidence 999999999999 899999999999999999999999999999999533322222334788999998854 45666676
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCcccccc-eeEeecccccC
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDKF-KRYESHGVSGF 373 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~ 373 (442)
||+|+-+|+|......-....|...|.++.++.... ++++++.++.+++|++......... +.+. -+.
T Consensus 351 ------dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~----~~r 420 (463)
T KOG0270|consen 351 ------DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK----LGR 420 (463)
T ss_pred ------CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc----ccc
Confidence 999999999997544445556777999999998766 4666999999999998765432111 1111 122
Q ss_pred cEEEEEccCC-CEEEEecCCCcEEEEecCCceee
Q 013475 374 PIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELE 406 (442)
Q Consensus 374 v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~ 406 (442)
..|+++.|+- -+++.|+..+.++|||+.+...+
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 4466677754 46677888889999999876544
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=164.75 Aligned_cols=248 Identities=17% Similarity=0.159 Sum_probs=179.0
Q ss_pred eeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc-----EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEE
Q 013475 183 ARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI-----ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLR 257 (442)
Q Consensus 183 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 257 (442)
...+++|.+.|++++|+.||++|++++.|+.|++|+++... +++.--.-+..+.+.|.||-..++++.-....++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34678999999999999999999999999999999998642 2221113346789999999877777777777899
Q ss_pred EEECCCCc---eEE---------EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccc
Q 013475 258 LWDIRTGK---VAH---------EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAY 325 (442)
Q Consensus 258 iwd~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 325 (442)
+|.+...+ ... --..|.-.|.++-...++++|++++. |..|.+|+++ ++.+..+.... .
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-------dt~i~lw~lk-Gq~L~~idtnq-~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-------DTKICLWDLK-GQLLQSIDTNQ-S 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-------CCcEEEEecC-Cceeeeecccc-c
Confidence 99875322 111 11235556777777788999999998 9999999999 55555544332 3
Q ss_pred eeeeEEecCCCCeeEEEeCCCeEEEeeCC---CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 326 TCPCVRHHPFDPYFVAQSNGNYIAIFSST---PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~i~i~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
.-...+.+|+|+++++++-.-.+++|..- .+......+.+...+|...|..++||++...+++.+.||+++|||.+-
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 45567899999999999999999999853 222223334445556668899999999999999999999999999752
Q ss_pred ----c---eeeEeee--cc--CCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 403 ----S---ELERKIK--AY--EQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 403 ----~---~~~~~~~--~~--~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+ +.+.+.. .| .+.-..++.+|.+ +.|+.+. ...|++|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVF 357 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEE
Confidence 1 2222221 11 2334478999998 5666543 3345544
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=1.2e-22 Score=171.03 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=176.5
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-----cceeeeeccCCCceeEEEeCCC-CCEEEEEecC
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-----QKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYD 211 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d 211 (442)
.-.+.||+++|..++|+|-+.+.||+|+.|.+|.||++-... .+.+..+.+|...|.-++|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345679999999999999989999999999999999984332 2456778899999999999994 5789999999
Q ss_pred CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-CEeEEEEeeCCCEEE
Q 013475 212 CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-PILDVEFTINGKQFV 290 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~ 290 (442)
++|.+||+.+++.+..+.|...|.++.|+.+| .+|++.+.|..|+|||.++++.+.+-..|.+ .-..+.|-.+|..+.
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 99999999999999999999999999999997 8999999999999999999999988877766 445567888998555
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCc-ccceeeccccceeeeEEecCCCCee-EEEeCCCeEEEeeCCCCc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPFDPYF-VAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~i~i~~~~~~~ 357 (442)
+|.. ..++..+-+||..+-. ++..........+.--.+.++.+.+ ++|-.|+.|+.|.+....
T Consensus 233 TGfs----r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFS----RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccc----cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5543 3348999999987743 3333444455566666777877765 457788999999987754
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=8.4e-23 Score=168.06 Aligned_cols=246 Identities=20% Similarity=0.247 Sum_probs=192.4
Q ss_pred ccccceEEEEeeCC---CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEEE
Q 013475 143 HHTKAVNSINWSPT---HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 143 ~h~~~V~~~~~s~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd 218 (442)
.|....+.++|+-+ +.-+||.|+.-|.|+|.|+. ..++...+.+|...|+.|.|+|+ .+++++++.|..|++||
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~--~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV--SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc--hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 47788899999876 24588899999999999994 45888899999999999999995 58999999999999999
Q ss_pred CCCCcEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE--------------------------
Q 013475 219 VEKGIETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH-------------------------- 268 (442)
Q Consensus 219 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------- 268 (442)
+++..++..|. |...|.++.|+.+| .+|++++.|.+|++|++...+...
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999999987 88999999999997 799999999999999997322100
Q ss_pred --EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC-CCcccceeecc--------------ccceeeeEE
Q 013475 269 --EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS-REVPLSKQVYV--------------EAYTCPCVR 331 (442)
Q Consensus 269 --~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~--------------~~~~~~~~~ 331 (442)
+-.-|...|.|+.|. |+++++-+. ++.|..|... -++.+...... ........+
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSksc-------enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSC-------ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred ccccccccchHHHHHHH--hhheeeccc-------CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 112355566667765 578888777 8999999872 22221111111 011233456
Q ss_pred ecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 332 HHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 332 ~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+.+-++.|++|...|.+++||++..... ...++..+.....|...+||.||.+|+..+.|++|.-||..
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCc-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 7788899999999999999999987654 22444444555678899999999999999999999999854
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=169.91 Aligned_cols=221 Identities=24% Similarity=0.416 Sum_probs=168.4
Q ss_pred hhcCCCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCccee-eeeccCCCceeEEE
Q 013475 119 LLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA-RVLNFHSAAVNDVK 197 (442)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~ 197 (442)
.+..+............+.+.++.+|.+.=+.|+|||-..-.|++|..-+.|++|...++..+.- .-+.+|+..|-.|+
T Consensus 185 ~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 185 HLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQ 264 (440)
T ss_pred hhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhc
Confidence 34445555555555677889999999999999999995334588998889999999877654332 33567999999999
Q ss_pred eCC-CCCEEEEEecCCcEEEEECCCC---cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC---CceEEEe
Q 013475 198 WSQ-QGLFVLSCGYDCSSRLVDVEKG---IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT---GKVAHEY 270 (442)
Q Consensus 198 ~~~-~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~ 270 (442)
|+| ....|++|+.||+|+|||++.+ .++....|.+.|+.+.|+... .+|++|+.||+++|||+++ ++++..|
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 999 4678999999999999999998 455554599999999999985 5999999999999999986 4678899
Q ss_pred ccCCCCEeEEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCccc---------------ceeecc--ccceeeeEEe
Q 013475 271 IQSLGPILDVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPL---------------SKQVYV--EAYTCPCVRH 332 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~---------------~~~~~~--~~~~~~~~~~ 332 (442)
+.|..+|+++.|+|. ...|++++. |.+|.|||+...... .++.+. ....+..+.|
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~-------D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhW 416 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGE-------DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHW 416 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccC-------CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhee
Confidence 999999999999985 455666666 999999999653221 111122 2335666777
Q ss_pred cCCCC-eeEEEeCCCe
Q 013475 333 HPFDP-YFVAQSNGNY 347 (442)
Q Consensus 333 ~~~~~-~l~~~~~~~~ 347 (442)
++.-. ++++.+.+|.
T Consensus 417 H~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccCCCCeEEEecccce
Confidence 77655 3444444443
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.2e-22 Score=179.35 Aligned_cols=253 Identities=17% Similarity=0.200 Sum_probs=180.4
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSR 215 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~ 215 (442)
.+.....|.+.|..+.|-|. ...|++++.|.++++||++.....-...+.+|.+.|.+++|.+ |...|++|+.||.|.
T Consensus 92 ~lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hhcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 34566789999999999995 8899999999999999996654333344889999999999999 556789999999999
Q ss_pred EEECCCCc--------------------EEEee-------e-CCcc----eEEEEEccCCCCEEEEeeC-CCcEEEEECC
Q 013475 216 LVDVEKGI--------------------ETQSF-------R-EELA----VRVVKFHPENSNLFLSGGS-KGLLRLWDIR 262 (442)
Q Consensus 216 vwd~~~~~--------------------~~~~~-------~-~~~~----v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 262 (442)
|||++-.. ..+.. + +... |+.+.| .|+ ..|++++. |+.|+|||++
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe-~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDE-STLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-ecc-ceeeeccCCCcceEEEeec
Confidence 99985321 00000 0 2223 444444 453 67787777 9999999999
Q ss_pred CCceEEE--------eccC---CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc---cceee
Q 013475 263 TGKVAHE--------YIQS---LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE---AYTCP 328 (442)
Q Consensus 263 ~~~~~~~--------~~~~---~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~ 328 (442)
+...... +.-| .-.+.++.....|.+|++.+. |+.|++|++.....-....+.+ .....
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-------D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-------DNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-------CCcEEEEeccccCcCchhhccCcccceeee
Confidence 7643322 1122 235677777777888888777 9999999998754322211111 11223
Q ss_pred eEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC-CCEEEEecCCCcEEEEecCCc
Q 013475 329 CVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~ 403 (442)
.-..+|++.++++|+.+...++|.+....... ..+.+| ...|++++|.|. -.-+++++.|..++||++..+
T Consensus 322 ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~--~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 322 KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP--ALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeecCCCCceEeccCCCcceeeeeecCccCCh--hhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 34578999999999999999999998765432 223333 355888899883 345666699999999998654
No 161
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-21 Score=187.00 Aligned_cols=306 Identities=18% Similarity=0.201 Sum_probs=225.2
Q ss_pred ccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-----ceeeeeccCCCceeEEEeCCCCCE
Q 013475 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-----KLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 130 ~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
.|...+.++..|..|+..|..++.++..+.+++||+.||+|++|+...-.+ ....++......+.++.+.+.++.
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 367889999999999999999999998679999999999999999853222 233344445678999999999999
Q ss_pred EEEEecCCcEEEEECCCC--c-----EEEeee--CCcc-eEEEEEccCCCC-EEEEeeCCCcEEEEECCCCceEEEec--
Q 013475 205 VLSCGYDCSSRLVDVEKG--I-----ETQSFR--EELA-VRVVKFHPENSN-LFLSGGSKGLLRLWDIRTGKVAHEYI-- 271 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~--~-----~~~~~~--~~~~-v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-- 271 (442)
+|.++.||.|++.+++.. . +..... ..+. |...+|...... .++.+...+.|..||+++...+..++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998762 1 111111 2333 444455443334 78888889999999999876555443
Q ss_pred cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC---eeEE-Ee-CCC
Q 013475 272 QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP---YFVA-QS-NGN 346 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~-~~-~~~ 346 (442)
...+.|++++.+|.+.++++|+. .|.+.+||++-+.++.....+....+..+..+|..+ ..++ ++ ..+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts-------~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTS-------RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred ccccceeEEEecCCceEEEEecC-------CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 34578999999999999999998 999999999999999999888888888888877544 4444 44 578
Q ss_pred eEEEeeCCCCcccccceeEee---------c-----ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceee------
Q 013475 347 YIAIFSSTPPFRLDKFKRYES---------H-----GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE------ 406 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~---------~-----~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~------ 406 (442)
.|.+|++.++.+...+..-.+ . ........+.+...+.++++|+.|+.|+.||....+..
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~ 1345 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPG 1345 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccC
Confidence 999999998865432221100 0 11111223445555678999999999999997521100
Q ss_pred ------------------------------------------Eee--------eccCCceeEEEEcCCCCCEEEEeeCCC
Q 013475 407 ------------------------------------------RKI--------KAYEQACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 407 ------------------------------------------~~~--------~~~~~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
..+ ..|.+.|+++++......+|++++.||
T Consensus 1346 ~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG 1425 (1431)
T KOG1240|consen 1346 PSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDG 1425 (1431)
T ss_pred ccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCC
Confidence 000 135667888887766556999999999
Q ss_pred cEEEcC
Q 013475 437 DVSVYE 442 (442)
Q Consensus 437 ~i~iwd 442 (442)
.|+||.
T Consensus 1426 ~IkiWk 1431 (1431)
T KOG1240|consen 1426 VIKIWK 1431 (1431)
T ss_pred eeeecC
Confidence 999994
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=2e-22 Score=172.79 Aligned_cols=256 Identities=16% Similarity=0.197 Sum_probs=197.1
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.-+..+..|.++|.++.|+|.+...+++.+.||+|++-|++......+..+......+..+.|+.+...++++..=|...
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 34566789999999999999988899999999999999997665555555554566788899999888888888888999
Q ss_pred EEECCCCcE-EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce----EEEeccCCCCEeEEEEeeCCCEE
Q 013475 216 LVDVEKGIE-TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV----AHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 216 vwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
+||++++.. ...+. |+..|..++++|....+|++++.|++++|||++.-.. +.....|...|.+..|||.+-.|
T Consensus 305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 305 VIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred EEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence 999998755 44444 7889999999999999999999999999999986432 23345688899999999998889
Q ss_pred EeccCCCCCcCCCCeEEEEeCC----CCcccceeecccc----ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 290 VSSSDVSGSNMSENSIVVWDVS----REVPLSKQVYVEA----YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
++.+. |..|+|||.. .......+...+. .......|.|+..++++|..-..|-+||...+..+..
T Consensus 385 ~TT~~-------D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 385 LTTCQ-------DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred Eeecc-------CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 99998 9999999984 3333333333222 1344568999999999999999999999988764422
Q ss_pred ceeEeecccccCcEEEEEccCCC-EEEEecCCCcEEEEecC
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGE-KLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~iwd~~ 401 (442)
+..........-..|+|-+. +++.|+..|.|+||--+
T Consensus 458 ---l~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 458 ---LHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ---ccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 22222222233468999887 55555678889988644
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=161.42 Aligned_cols=293 Identities=13% Similarity=0.102 Sum_probs=202.2
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec-cCCCceeEEEeCCCCCEEEEEecCC
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN-FHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
+......|++|.+.|+++.|-.+ ++ |.+|..-|.|++|++.+. .....+. .|...|+.+.-.|+ ..|.+-+.|+
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~-~r-L~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQAN-ER-LMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEeccccchheehhhccc-hh-hhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 34566778899999999999987 54 889999999999999665 3334444 47889999998887 4688889999
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccC-----CC---CEEEEeeCCC-cEEEEECCCCceEEEe----ccCCCCEeE
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPE-----NS---NLFLSGGSKG-LLRLWDIRTGKVAHEY----IQSLGPILD 279 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~---~~l~~~~~dg-~i~iwd~~~~~~~~~~----~~~~~~i~~ 279 (442)
.+.+|++..+..+..-. -.++++.|.+. .+ .+++.-++.. .+.+-|......+... ....+.+.+
T Consensus 78 ~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred eEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 99999998765444322 33344444332 11 1111111110 1222222211122211 122345666
Q ss_pred EEEee-CCC--EEEeccCCCCCcCCCCeEEEEeCCCCcccce---------eeccccceeeeEEecCCCCeeEEEeCCCe
Q 013475 280 VEFTI-NGK--QFVSSSDVSGSNMSENSIVVWDVSREVPLSK---------QVYVEAYTCPCVRHHPFDPYFVAQSNGNY 347 (442)
Q Consensus 280 ~~~~~-~~~--~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (442)
..+.. ++. +++.|.+ +|.+.+||+.++..+.. -...+..++.++.+.+.-..=+.|+.+..
T Consensus 156 ~~~~~~c~s~~lllaGyE-------sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYE-------SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred eeccccccceEEEEEecc-------CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 66432 233 3445555 99999999998632221 12245667888888887777788888899
Q ss_pred EEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCC
Q 013475 348 IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPN 427 (442)
Q Consensus 348 i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 427 (442)
+..|+++.......+.......+ -.+..+.+-||++.+|+++.|+.|+||+.++.+++..++-|...|++++|+|+. .
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~ 306 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-E 306 (323)
T ss_pred ceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-c
Confidence 99998876533222222222121 236678999999999999999999999999999999999999999999999997 6
Q ss_pred EEEEeeCCCcEEEcC
Q 013475 428 IIGSCSWNGDVSVYE 442 (442)
Q Consensus 428 ~l~s~~~dg~i~iwd 442 (442)
++|.++.|++|.+|+
T Consensus 307 lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 307 LMAAASKDARISLWK 321 (323)
T ss_pred hhhhccCCceEEeee
Confidence 999999999999996
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=172.83 Aligned_cols=213 Identities=19% Similarity=0.326 Sum_probs=174.6
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRL 216 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~v 216 (442)
...-.+|++.|.+|+|+....+.||+|+.|.+|++||+.+ .++..++..|.+.|.++.|++ ...+|++|+.|++|.+
T Consensus 236 ~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l 313 (463)
T KOG0270|consen 236 SNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVAL 313 (463)
T ss_pred ccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--CCcceehhhcCCceeEEEecCCCceEEEeccccceEEe
Confidence 3445689999999999998788999999999999999955 588888888999999999999 5789999999999999
Q ss_pred EECCC-CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCC-CEEEecc
Q 013475 217 VDVEK-GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTING-KQFVSSS 293 (442)
Q Consensus 217 wd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 293 (442)
.|.+. ...-..++..+.|..++|++...+.++++..||.|+-+|+|+. +++.+++.|.++|.+|+++..- .++++++
T Consensus 314 ~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 314 KDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred eeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence 99984 3444566678999999999998899999999999999999975 8999999999999999998754 4567777
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCCCe-eEEEeCCCeEEEeeCCCCccc
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFDPY-FVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~i~i~~~~~~~~~ 359 (442)
. |+.|++|++........... ..-....|+++.|+-.+ ++.|+..+.+++||+.+....
T Consensus 394 ~-------d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 394 T-------DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred c-------cceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 6 99999999976443222111 11234677888888765 455777778999998775443
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=165.32 Aligned_cols=273 Identities=12% Similarity=0.149 Sum_probs=198.0
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--CCCEEEEEecCCcEEEEECCCCcEEEeee---C-Cc
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSRLVDVEKGIETQSFR---E-EL 232 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~-~~ 232 (442)
..+|++..+|.|+|||..+ .+.+..++++...++.+.|.. ....+.+|+.||+|++||++.......+. + ..
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 4688888899999999954 588889999999999999987 46789999999999999999887665555 2 23
Q ss_pred ceEEEEEccCCCCEEEEeeC----CCcEEEEECCCCce-EEEe-ccCCCCEeEEEEeeC-CCEEEeccCCCCCcCCCCeE
Q 013475 233 AVRVVKFHPENSNLFLSGGS----KGLLRLWDIRTGKV-AHEY-IQSLGPILDVEFTIN-GKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 233 ~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i 305 (442)
...++..+-.+ +++++|.. +-.|.+||+|..+. +..+ ..|...|++++|+|. -++|++|+- ||.|
T Consensus 119 ~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv-------DGLv 190 (376)
T KOG1188|consen 119 PFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV-------DGLV 190 (376)
T ss_pred cceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc-------cceE
Confidence 56666666553 77777753 56799999998765 5554 568899999999994 578899998 9999
Q ss_pred EEEeCCCCccc--ceeeccccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCcccccceeE-------eecccccCcE
Q 013475 306 VVWDVSREVPL--SKQVYVEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDKFKRY-------ESHGVSGFPI 375 (442)
Q Consensus 306 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~-------~~~~~~~~v~ 375 (442)
.+||+.....- ......+...|.++.|..++ +.+.+-+......+|+++.+.....+... .......++.
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 99999875321 12233456678899998877 56888899999999999877643222111 0111123333
Q ss_pred EEEEccCCCEEEEecC-CCcEEEEecC---C---ceeeEeeec-cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 376 KCSFSLDGEKLVSGSS-DGSIYFYNCR---S---SELERKIKA-YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
......++..++.++. -|+..++-+. + .+.+..+++ |..-|.++.|.-.+ .++.|||.||.+.+|.
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWK 344 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEe
Confidence 3333335555555444 5555555433 2 344556666 67788999998877 7999999999999993
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.4e-22 Score=172.75 Aligned_cols=210 Identities=21% Similarity=0.320 Sum_probs=159.4
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceee-eeccCCCceeEEEeCC--CCCEEEEEecCC
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR-VLNFHSAAVNDVKWSQ--QGLFVLSCGYDC 212 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~l~~~~--~~~~l~s~~~d~ 212 (442)
.+.+.|.||++.|+|+.|+.+ |.+|++|+.|-.+.|||... .+++. .-.+|...|.++.|-| +++.+++|..|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred chhhhhccccceecceeecCC-CCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 455788999999999999999 99999999999999999853 34444 4468999999999999 578899999999
Q ss_pred cEEEEECCCC----------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE----------EEec
Q 013475 213 SSRLVDVEKG----------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA----------HEYI 271 (442)
Q Consensus 213 ~v~vwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~ 271 (442)
.|+++|+... +....+. |...|..++-.|++.+.|.++++||+|+-+|++..... ..+.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999852 2223333 78889999999998899999999999999999863211 1111
Q ss_pred cCCCCEeEEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCc------------------ccceeeccc---------
Q 013475 272 QSLGPILDVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREV------------------PLSKQVYVE--------- 323 (442)
Q Consensus 272 ~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~--------- 323 (442)
...-...++..+|. ..+|++|+. |-..++||.+... ++..+...+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgs-------dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGS-------DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCC-------CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 22235678888885 467788887 9999999954311 111111111
Q ss_pred --cceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 324 --AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 324 --~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
...++-+.|+|+|..+++.-....|++||+..
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 11256688999999999998889999998754
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=3.3e-20 Score=167.69 Aligned_cols=273 Identities=11% Similarity=0.097 Sum_probs=181.7
Q ss_pred EEEecCCCcEEEEEccc-CCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEEECCC-CcE--EEeeeCCcceE
Q 013475 161 LASAGMDQSICIWNVWS-RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEK-GIE--TQSFREELAVR 235 (442)
Q Consensus 161 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~-~~~--~~~~~~~~~v~ 235 (442)
+++...++.|.+|++.+ +....+..+. +.+....++++|++++|++++. ++.|.+|+++. ++. +..........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44446789999999953 2234555555 4567888999999999877654 78899999973 432 23333445678
Q ss_pred EEEEccCCCCEEEEeeCCCcEEEEECCCC----ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 236 VVKFHPENSNLFLSGGSKGLLRLWDIRTG----KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 236 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
.++|+|++..++++...++.|.+|++.+. +.+..+. +......+.++|++++++++.. .++.|.+||+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~ 156 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLS 156 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEEC
Confidence 89999997444444455889999999642 2223222 2234677889999998866554 27999999998
Q ss_pred CCcccce-----eeccccceeeeEEecCCCCeeEEEeC-CCeEEEeeCCCC-cccccceeEeec----ccccCcEEEEEc
Q 013475 312 REVPLSK-----QVYVEAYTCPCVRHHPFDPYFVAQSN-GNYIAIFSSTPP-FRLDKFKRYESH----GVSGFPIKCSFS 380 (442)
Q Consensus 312 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~i~i~~~~~~-~~~~~~~~~~~~----~~~~~v~~~~~s 380 (442)
+...+.. ...........+.|+|+++++++... ++.|.+|+++.. .....+..+... ........+.|+
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 6432221 11122344677999999999988776 899999999742 122222222211 111234468899
Q ss_pred cCCCEEEEecC-CCcEEEEecCCceeeEeeecc---CCceeEEEEcCCCCCEEEEee-CCCcEEEcC
Q 013475 381 LDGEKLVSGSS-DGSIYFYNCRSSELERKIKAY---EQACIDVAFHPILPNIIGSCS-WNGDVSVYE 442 (442)
Q Consensus 381 ~~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 442 (442)
|+|++|+++.. ++.|.+|++.......++.++ ......+.|+|+| ++|+++. .+++|.||+
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSG-KYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCC-CEEEEEEccCCcEEEEE
Confidence 99999999864 789999998653322222222 2345689999999 5665554 589999983
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.9e-22 Score=160.91 Aligned_cols=247 Identities=14% Similarity=0.146 Sum_probs=177.9
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
++..++. |.. ..|+.|++.|.+|++|+.||.|.|||+.+...-+.+. |-.+|++++|+++| ..|++++.|..|.+|
T Consensus 16 el~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lw 92 (405)
T KOG1273|consen 16 ELTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLW 92 (405)
T ss_pred hhceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEE
Confidence 3444454 333 7899999999999999999999999999988777777 89999999999997 899999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc--ccceeec-cccceeeeEEecCCC
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV--PLSKQVY-VEAYTCPCVRHHPFD 336 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 336 (442)
|+..|.+++.+... ++|..+.|+|.....+.++.+ +..-.+.++.... .+..-.. .......+..|.+.|
T Consensus 93 Dl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~------~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIM------EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred eccCCCceeEEEcc-CccceeeeccccCCeEEEEEe------cCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 99999988887654 899999999955433333221 3444555554322 1111111 111223345689999
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc-------e--eeE
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS-------E--LER 407 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-------~--~~~ 407 (442)
+++++|...|.+.+|+..+......++... ...|..+.++..|++|+.-+.|..|+.|+++.- + +.+
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 999999999999999999876553333221 244778999999999999999999999997621 1 112
Q ss_pred eeecc--CCceeEEEEcCCCCCEEEEee-CCCcEEEcC
Q 013475 408 KIKAY--EQACIDVAFHPILPNIIGSCS-WNGDVSVYE 442 (442)
Q Consensus 408 ~~~~~--~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 442 (442)
+++.- ...-.+++|+.+|. +++.++ .-..++||+
T Consensus 242 K~qDvVNk~~Wk~ccfs~dge-Yv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGE-YVCAGSARAHALYIWE 278 (405)
T ss_pred HHHHHHhhhhhhheeecCCcc-EEEeccccceeEEEEe
Confidence 22211 22345788999994 555444 456789985
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=6.4e-21 Score=154.35 Aligned_cols=261 Identities=16% Similarity=0.233 Sum_probs=199.0
Q ss_pred CCCcEEEEEcccCCcce-eeeeccCCCceeEEEeCC-CCCEEEEEecC-------CcEEEEECCCC---------cEEEe
Q 013475 166 MDQSICIWNVWSRDQKL-ARVLNFHSAAVNDVKWSQ-QGLFVLSCGYD-------CSSRLVDVEKG---------IETQS 227 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d-------~~v~vwd~~~~---------~~~~~ 227 (442)
.|+.|.+.+++.+...+ ...|..|.+.|..++-+| +.+.|+++..+ ..+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 46788888886654443 345666889999999999 55566666542 24679988653 22333
Q ss_pred ee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEec-----cCCCCEeEEEEee--CCCEEEeccCCCC
Q 013475 228 FR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYI-----QSLGPILDVEFTI--NGKQFVSSSDVSG 297 (442)
Q Consensus 228 ~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~~~~ 297 (442)
+. +-+.|.|+.|.|++ ..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +|+.+++.+
T Consensus 118 Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~---- 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS---- 191 (370)
T ss_pred CCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC----
Confidence 33 44589999999986 5555544 78999999987654 33332 2345677888988 889999988
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCe-eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY-FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
|+++..||+++.+....+...|...+..+.|+|+.++ |++++.|+.|++||.+..... +..+ +.|.-++.+
T Consensus 192 ----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p--v~el--~~HsHWvW~ 263 (370)
T KOG1007|consen 192 ----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP--VQEL--PGHSHWVWA 263 (370)
T ss_pred ----CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc--cccc--CCCceEEEE
Confidence 8999999999999888899999999999999998875 556889999999999875432 2333 445567999
Q ss_pred EEEcc-CCCEEEEecCCCcEEEEecCCc-----------------------------eeeEeeeccCCceeEEEEcCCCC
Q 013475 377 CSFSL-DGEKLVSGSSDGSIYFYNCRSS-----------------------------ELERKIKAYEQACIDVAFHPILP 426 (442)
Q Consensus 377 ~~~s~-~g~~l~~g~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~~p~~~ 426 (442)
+.|+| ...+|++|+.|..|.+|....- ..+.++..|++.|++++|+.-.+
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999 4578889999999999964310 13456778999999999999989
Q ss_pred CEEEEeeCCCcEEE
Q 013475 427 NIIGSCSWNGDVSV 440 (442)
Q Consensus 427 ~~l~s~~~dg~i~i 440 (442)
.+||+-+.||.+.|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 99999999999876
No 170
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.4e-21 Score=155.74 Aligned_cols=243 Identities=19% Similarity=0.313 Sum_probs=185.8
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC---CCCEEEEEecCCcEEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ---QGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~d~~v~vwd 218 (442)
.+|+-.|.++.|-|-+.-++.+++-|.+++|||..+. +....|+ ..+.|++-+++| ...++++|..|-.|++.|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl--Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL--QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccc--eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 4789999999999976778999999999999999554 5555565 568899999998 345777888889999999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEE--------------eccCCCCEeEEEE
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHE--------------YIQSLGPILDVEF 282 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~i~~~~~ 282 (442)
+.+|.+...+. |...|.++.|+|.....|++|+.||.|++||++.. .+... -..|.+.|..++|
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence 99999999998 99999999999998889999999999999999854 22222 2356778999999
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec----cc-cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY----VE-AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
..++.++++++. |..+++|+..++........ .. ...-..+. +-+...++.--.++.+.++++-.+.
T Consensus 255 tSd~~~l~~~gt-------d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs 326 (397)
T KOG4283|consen 255 TSDARYLASCGT-------DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGS 326 (397)
T ss_pred cccchhhhhccC-------ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCce
Confidence 999999999998 99999999987653211100 00 00001122 2333444444555788888877766
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
.+ ..+..| ...+.+.++-++-....+|..|+.|..|-.
T Consensus 327 ~i---r~l~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 327 FV---RRLSTH--LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EE---Eeeecc--cceeeEEeecCchhhhhccccCCccccccc
Confidence 55 333333 345778899999999999999999999976
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=193.01 Aligned_cols=251 Identities=16% Similarity=0.249 Sum_probs=201.6
Q ss_pred ccceEEEEeeCCCCC---EEEEecCCCcEEEEEccc----CCcceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEE
Q 013475 145 TKAVNSINWSPTHAH---LLASAGMDQSICIWNVWS----RDQKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRL 216 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~---~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~v 216 (442)
....+.++|.+.+.. +||.|..||.|.+||... .....+.....|++.|..+.|++. +++|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999998333 489999999999999743 234566777889999999999995 559999999999999
Q ss_pred EECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC--CEeEEEEeeCC-CEEE
Q 013475 217 VDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG--PILDVEFTING-KQFV 290 (442)
Q Consensus 217 wd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~ 290 (442)
||+.+-+.-..+. ....|.+++|+..-.++|++++.+|.+.|||++..+.+-.+..+.+ .+..+.|+|++ ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9999865544442 5678999999988788999999999999999999888777766544 57889999986 3455
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+++... ..-.|.+||+|......+....|...+.++.|++.+ .++++++.|+.|.+|+.+++..+..+. .
T Consensus 224 ~As~dd----~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-----~ 294 (1049)
T KOG0307|consen 224 VASGDD----SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-----A 294 (1049)
T ss_pred eecCCC----CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-----C
Confidence 555411 245799999998766666667888899999999987 788889999999999999976654333 2
Q ss_pred cccCcEEEEEccCC-CEEEEecCCCcEEEEecCCce
Q 013475 370 VSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 370 ~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~ 404 (442)
...++..+.|.|.. ..|++.+-||.|.||.+....
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 34668899999965 488889999999999987653
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=2.6e-19 Score=168.57 Aligned_cols=287 Identities=25% Similarity=0.425 Sum_probs=222.6
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEe-CCCCC-EEEEEec-CCcEE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKW-SQQGL-FVLSCGY-DCSSR 215 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~-~l~s~~~-d~~v~ 215 (442)
.+..|...|.++.|.+. +..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 56789999999999999 8889999999999999985542 2455555433 37777777 77777 5555455 99999
Q ss_pred EEECCC-CcEEEeee-CCcceEEEEEccCCCCEEEEeeC-CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC-EEEe
Q 013475 216 LVDVEK-GIETQSFR-EELAVRVVKFHPENSNLFLSGGS-KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK-QFVS 291 (442)
Q Consensus 216 vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 291 (442)
+|+... ......+. |...|..+.|++++ ..+++++. |+.+++|++..+..+..+..|...|.++.|++++. .+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 999998 55555555 88999999999997 57777775 99999999998888889999999999999999998 5555
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
++. |+.|.+||...+.........+.... ...|++++.++++++.++.+++|+...... .+... ..+.
T Consensus 217 ~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~--~~~~ 284 (466)
T COG2319 217 GSS-------DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTL--SGHS 284 (466)
T ss_pred ecC-------CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEE--ecCC
Confidence 466 99999999886555542233333332 238999998888999999999999987665 11222 2335
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee--ccCCceeEEEEcCCCCCEEEEe-eCCCcEEEcC
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK--AYEQACIDVAFHPILPNIIGSC-SWNGDVSVYE 442 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd 442 (442)
..+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+++ ..++.+ ..|+.+.+|+
T Consensus 285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWD 357 (466)
T ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC-CEEEEeecCCCcEEeee
Confidence 678899999988899889989999999998887766665 787789999994332 344444 6888898885
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3e-22 Score=176.22 Aligned_cols=254 Identities=18% Similarity=0.218 Sum_probs=186.6
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc------CCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS------RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
..++..|.+.|..+.|.+. ...|++++.||+|++|+++. ...+.+.+|.+|.++|.|+++..++..+++|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3488899999999999999 77899999999999999932 2346788899999999999999999999999999
Q ss_pred CcEEEEECCCC----------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC--CCEe
Q 013475 212 CSSRLVDVEKG----------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL--GPIL 278 (442)
Q Consensus 212 ~~v~vwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~ 278 (442)
|+|+.|++... .....+. |...|+.++++.. ...|++++.||++++|+...... .++.... +.-.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999966422 1122233 8899999999998 47899999999999999876555 3333222 2223
Q ss_pred EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 279 DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
++.+-.. .++.... +..+..+++.+.+............
T Consensus 444 svd~~ss--~~a~~~~-------s~~~~~~~~~~~ev~s~~~~~~s~~-------------------------------- 482 (577)
T KOG0642|consen 444 SVDRTSS--RPAHSLA-------SFRFGYTSIDDMEVVSDLLIFESSA-------------------------------- 482 (577)
T ss_pred eEeeccc--hhHhhhh-------hcccccccchhhhhhhheeeccccC--------------------------------
Confidence 4444322 2111111 3344444444333222211111100
Q ss_pred cccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 359 LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
..+......+..+.++|.+.+.+++..|+.|+++|..+++.+.....|...++++++.|+| -+|++++.||.+
T Consensus 483 ------~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv 555 (577)
T KOG0642|consen 483 ------SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSV 555 (577)
T ss_pred ------CCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC-ceEEeecCCcee
Confidence 0000111235567888999999999999999999999999999999999999999999999 599999999999
Q ss_pred EEcC
Q 013475 439 SVYE 442 (442)
Q Consensus 439 ~iwd 442 (442)
++|.
T Consensus 556 ~l~k 559 (577)
T KOG0642|consen 556 RLWK 559 (577)
T ss_pred ehhh
Confidence 9994
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=4.6e-21 Score=162.20 Aligned_cols=287 Identities=21% Similarity=0.222 Sum_probs=196.7
Q ss_pred ccchhhhHhhhhhhcCCCccCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcc----------
Q 013475 107 ISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVW---------- 176 (442)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~---------- 176 (442)
-.|..+|.|....... ... ...-+.+..|..|...|+++.|+|+ |.+||+|+.+|.|.+|...
T Consensus 33 G~D~~iriW~v~r~~~--~~~----~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 33 GGDKDIRIWKVNRSEP--GGG----DMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred cCccceeeeeeeecCC--CCC----ceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccch
Confidence 3567777777433221 111 1234567789999999999999999 9999999999999999875
Q ss_pred ----cCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEee
Q 013475 177 ----SRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGG 251 (442)
Q Consensus 177 ----~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~ 251 (442)
.+.....+.+.+|...|+.++|++++.++++++.|+.+++||+..|+....+. |...+..++|.|-+ .++++-+
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-qyv~s~s 184 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-QYVASKS 184 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh-hhhhhhc
Confidence 12245566788899999999999999999999999999999999999998887 89999999999985 8888888
Q ss_pred CCCcEEEEECCCCceEEEec----------c---------C----CCCEeEEEEeeCCCEEEeccCCCCCcCC--CCeEE
Q 013475 252 SKGLLRLWDIRTGKVAHEYI----------Q---------S----LGPILDVEFTINGKQFVSSSDVSGSNMS--ENSIV 306 (442)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~----------~---------~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~--d~~i~ 306 (442)
.|...+.+.+...+.++... . | ......++|+|+|..+++.......+.. -+..+
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tY 264 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSY 264 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeE
Confidence 88877777765433222111 0 1 1123567899999999987652221110 12334
Q ss_pred EEeCCCCcccceeeccccceeeeEEecC-----------------CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 307 VWDVSREVPLSKQVYVEAYTCPCVRHHP-----------------FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 307 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+|+-...+...-...........+.++| --+.+++....+.+++||.+....+..+..+.
T Consensus 265 vfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nih--- 341 (434)
T KOG1009|consen 265 VFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIH--- 341 (434)
T ss_pred eeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeee---
Confidence 4443321111111111111122222221 11234445567889999998866554433332
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
-..++.++|+.||.+|+..+.||...+..++..++
T Consensus 342 -y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 342 -YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred -eeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 24588999999999999999999988887776554
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=160.50 Aligned_cols=258 Identities=17% Similarity=0.242 Sum_probs=186.7
Q ss_pred CCcceecccccccceEEEEeeCC-CCCEEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEeCCCCCEEEEEec-
Q 013475 134 PGRLSTALCHHTKAVNSINWSPT-HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQQGLFVLSCGY- 210 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~- 210 (442)
.++.+..+++|...++.++|..+ ....+.+|+.||+|++||++.........+..+. .+..+++.+-+++.+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 36788899999999999999874 5788999999999999999887777777777776 56677777767788887754
Q ss_pred ---CCcEEEEECCCCcE-EEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce---EEEeccCCCCEeEEE
Q 013475 211 ---DCSSRLVDVEKGIE-TQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV---AHEYIQSLGPILDVE 281 (442)
Q Consensus 211 ---d~~v~vwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~ 281 (442)
+-.|.+||++..+. +..+. |...|++++|+|.+.++|++|+.||.|.+||++.... +.....+...|.++.
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 67899999998776 66555 8999999999999999999999999999999975432 222334667899999
Q ss_pred EeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc------------cceeeeEEecC-CCCeeEE-EeCCC
Q 013475 282 FTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE------------AYTCPCVRHHP-FDPYFVA-QSNGN 346 (442)
Q Consensus 282 ~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~l~~-~~~~~ 346 (442)
|..++ +.|.+-+. ..+..+|+++.+.......... ..-|. ..+| +...+++ ++..+
T Consensus 219 w~~~~ykrI~clTH-------~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n 289 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTH-------METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSN 289 (376)
T ss_pred eecCCcceEEEEEc-------cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee--cccCCCcceEEEeccccC
Confidence 99877 34666666 8999999999876443322210 00111 1223 3334444 44355
Q ss_pred eEEEeeCC---CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 347 YIAIFSST---PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 347 ~i~i~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
...++-+. .+........+.+ .+...|.++.|...+.++++|++||.+.+|...
T Consensus 290 ~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 290 KGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 55555433 2222222233333 234557788888899999999999999999853
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=154.85 Aligned_cols=235 Identities=21% Similarity=0.317 Sum_probs=180.0
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEECCCC--------------cEEEeeeCCcceEEEEEc-------cCCCCEEEEee
Q 013475 193 VNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--------------IETQSFREELAVRVVKFH-------PENSNLFLSGG 251 (442)
Q Consensus 193 v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~--------------~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~ 251 (442)
...+.|+|||..|++-+.|..+.+|++... .....+.....|...+|- |+ .+++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeecc
Confidence 457899999999999999999999998431 112223356677777775 55 58999999
Q ss_pred CCCcEEEEECCCCceEEEecc--CCC---CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeC-CCCcccce------e
Q 013475 252 SKGLLRLWDIRTGKVAHEYIQ--SLG---PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDV-SREVPLSK------Q 319 (442)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~-~~~~~~~~------~ 319 (442)
.+.-|++||.-+|+....+.. |.. ...+++|+|||.+|++|. ...|++||+ +.+..... -
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------krcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------KRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------cceEEEeeccCCCCCCcchhhhhcc
Confidence 999999999999988766643 322 457899999999999998 799999999 44332211 1
Q ss_pred eccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC-CCcEEE
Q 013475 320 VYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS-DGSIYF 397 (442)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~i 397 (442)
......-+.+++|+|... .+++++....+-||.-.....+ ..+ +.+.+.|+.+.|.++|+.|++|.. |-.|..
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---~ll--ggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---QLL--GGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce---eee--cccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 223356788999999766 8888999999999887776554 222 355678999999999999999975 678999
Q ss_pred EecCC-ceeeEeeeccCC-ceeE--EEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 398 YNCRS-SELERKIKAYEQ-ACID--VAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 398 wd~~~-~~~~~~~~~~~~-~v~~--~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
||++. ..++..+..|.+ .=.. +...|++ ++|++|+.||.|++||
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWD 325 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEe
Confidence 99986 466777877755 2223 4456888 7999999999999997
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-19 Score=167.73 Aligned_cols=289 Identities=14% Similarity=0.194 Sum_probs=213.0
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc--CCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
.|+-.++|.++||+ ++++|+|..||.|.+|.-.. ........+.=|...|.+++|+++|.+|++|+..+.+.+|.++
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 46777999999999 99999999999999997432 3334455666788999999999999999999999999999999
Q ss_pred CCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-----------CCCCEeEEEEeeCCCEE
Q 013475 221 KGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-----------SLGPILDVEFTINGKQF 289 (442)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l 289 (442)
+++....-+-.+.|..+.++||+ .+.+....|..|.+....+.....++.+ ..+-.+.++++|.-+.+
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 99844444578999999999996 7777778899999998765544333322 23345678888866677
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeec----------cccceeeeEEecCCCCeeEEEe--------C--CCeEE
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVY----------VEAYTCPCVRHHPFDPYFVAQS--------N--GNYIA 349 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~--------~--~~~i~ 349 (442)
+..+. .+.|.+||+-+...+..+.. .....++.++.+-.|.++++.- . ...++
T Consensus 361 vln~~-------~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 361 VLNGH-------PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred eecCC-------CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 77776 89999999988766544322 1123456667777788888742 2 24678
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEcc-CC-CEEEEecCCCcEEEEecCCc----------eeeEeeeccCCcee
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DG-EKLVSGSSDGSIYFYNCRSS----------ELERKIKAYEQACI 417 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g-~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~ 417 (442)
+|-.+.......+.+.....|...+...++.+ .. ...++++.||.++||-+... .+...-.-|..+++
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~ 513 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT 513 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence 89887776666665555555555555544443 33 37899999999999988332 12211113678999
Q ss_pred EEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 418 DVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 418 ~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.++|+.|| -+++++.|++|.|||
T Consensus 514 a~~fs~dG--slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 514 ALCFSQDG--SLLAVSFDDTITIWD 536 (792)
T ss_pred chhhcCCC--cEEEEecCCEEEEec
Confidence 99999999 455566899999998
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-19 Score=141.57 Aligned_cols=272 Identities=15% Similarity=0.206 Sum_probs=195.4
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEccc--------CCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWS--------RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
..|.+-+|+|. +++|+.|+.+|.|.+..+.+ ..+..+..+++|.++|+.++|+ ..+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 45677789999 99999999999999999842 2234455568899999999998 34777777 6999999
Q ss_pred ECCCCcE------EEeee---C-----CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 218 DVEKGIE------TQSFR---E-----ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 218 d~~~~~~------~~~~~---~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
....... +...+ + --.|+++...|.. +-++.++.|+.++-||+++|+..+++++|...|.++.--
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 8754322 11111 1 2358899999986 445555589999999999999999999999999999986
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc---------ceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA---------YTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
.....+++|+. ||++++||.++.+.+..+..... ..|.++ .-+..++++ +.+..+.+|.++
T Consensus 166 ~~~~qilsG~E-------DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvC-GgGp~lslwhLr 235 (325)
T KOG0649|consen 166 NANGQILSGAE-------DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVC-GGGPKLSLWHLR 235 (325)
T ss_pred ccCcceeecCC-------CccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEe-cCCCceeEEecc
Confidence 66677889998 99999999999887766543222 123333 334445554 467789999998
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
.......+. ....+..+.|. .+.+++++..+.|.-|.+. |.+...++......+...|+..--++|..++.
T Consensus 236 sse~t~vfp------ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~ 306 (325)
T KOG0649|consen 236 SSESTCVFP------IPARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGF 306 (325)
T ss_pred CCCceEEEe------cccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEeccc
Confidence 876543221 22345566774 4478888888889999875 66666666555667777775443246666777
Q ss_pred CCcEEEc
Q 013475 435 NGDVSVY 441 (442)
Q Consensus 435 dg~i~iw 441 (442)
.+.+.|+
T Consensus 307 s~~~~i~ 313 (325)
T KOG0649|consen 307 SNKLHIL 313 (325)
T ss_pred ceeeeee
Confidence 7777664
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=4.6e-18 Score=160.08 Aligned_cols=288 Identities=26% Similarity=0.432 Sum_probs=223.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecC-CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCC-EEEEEecCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGM-DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL-FVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~ 212 (442)
......+..|...|.+++|+++ +.++++++. |+.+++|++.. ......+.+|...|.+++|++++. .+++++.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 4778889999999999999999 778888885 99999999844 577778888999999999999987 555558999
Q ss_pred cEEEEECCCCcEEE-eee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEeeCCCEE
Q 013475 213 SSRLVDVEKGIETQ-SFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 213 ~v~vwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
.|++||...+.... .+. |.... ...|++++ .++++++.|+.+++|+++.... ...+..|...|.++.|.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 99999998887777 455 55543 33899986 7888999999999999987664 44446778899999999988888
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceee-ccccceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCcccccceeEee
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQV-YVEAYTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
++++. |+.+.+||........... ..+...+..+.+.+++..++.+ ..++.+.+|+....... .....
T Consensus 300 ~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~ 369 (466)
T COG2319 300 ASGSS-------DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL---KTLEG 369 (466)
T ss_pred EEeeC-------CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee---EEecC
Confidence 88777 8889999988876555544 3344467778883332455555 67788999998876511 11111
Q ss_pred cccccCcEEEEEccCCCEEEE-ecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 368 HGVSGFPIKCSFSLDGEKLVS-GSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
. ..+..+.+++ ...++. +..++.+.+|+.........+..+...+....+.+++ ..+++++.++.+++|+
T Consensus 370 ~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 370 H---SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWD 440 (466)
T ss_pred C---ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEe
Confidence 1 1166788888 544444 6889999999999888777766544788999999998 6888889999999995
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4.3e-20 Score=155.77 Aligned_cols=230 Identities=17% Similarity=0.255 Sum_probs=181.0
Q ss_pred eeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCC-------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCC
Q 013475 184 RVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKG-------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKG 254 (442)
Q Consensus 184 ~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg 254 (442)
-.+.+|+++|..++|+| +.+.|++|+.|.+|.||.+-.+ +.+..+. |...|.-++|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34668999999999999 7788999999999999998765 2344444 8899999999999889999999999
Q ss_pred cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC
Q 013475 255 LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
+|.+||+.+++.+.++. |...|.+++|+.||.+|++++. |..|+|||.++++.+..-..+....-..+.|-.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck-------DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK-------DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc-------cceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 99999999999888887 9999999999999999999998 999999999999988887667777778888888
Q ss_pred CCCeeEEEe---CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEE-EecCCCcEEEEecCCcee-eEee
Q 013475 335 FDPYFVAQS---NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLV-SGSSDGSIYFYNCRSSEL-ERKI 409 (442)
Q Consensus 335 ~~~~l~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~iwd~~~~~~-~~~~ 409 (442)
++..+.+|. .+..+.+||..+......+..+. .+..|.---|.+|.+.|+ +|-.|+.|+-|.+.+..+ ++-+
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEec---cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 888555543 46789999987765543333332 223455556788888776 556799999999876553 2222
Q ss_pred ecc--CCceeEEEEcCC
Q 013475 410 KAY--EQACIDVAFHPI 424 (442)
Q Consensus 410 ~~~--~~~v~~~~~~p~ 424 (442)
... ..+-.++.|.|.
T Consensus 304 n~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 304 NTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cccccCCcccccccccc
Confidence 211 334455666654
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=168.03 Aligned_cols=244 Identities=14% Similarity=0.212 Sum_probs=188.4
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.+.++++|+||++.|+|++|+.| |+.+|+|+.|+.|.||+- +.+-+..+. |+..|.|+.|+|-.+.|++|+-. .
T Consensus 42 dG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~---klEG~LkYS-H~D~IQCMsFNP~~h~LasCsLs-d 115 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTS---KLEGILKYS-HNDAIQCMSFNPITHQLASCSLS-D 115 (1081)
T ss_pred CcccccccccccceEEEEEEccC-CceeccCCCceeEEEecc---cccceeeec-cCCeeeEeecCchHHHhhhcchh-h
Confidence 57889999999999999999999 999999999999999994 223333444 99999999999998999998854 3
Q ss_pred EEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCCCEeEEEEeeCC----
Q 013475 214 SRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLGPILDVEFTING---- 286 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~---- 286 (442)
.-+|..+.. .+.+.+....+.+++|..|| .+|+.|-.+|+|.+-+- +++....+ .+..++|.+++|+|..
T Consensus 116 FglWS~~qK-~V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 116 FGLWSPEQK-SVSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred ccccChhhh-hHHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence 678886653 33444556788999999997 89999999999999874 34433333 3467799999999863
Q ss_pred -CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 287 -KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 287 -~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
..+++... ..++.+|.+.....-.. ..-.....|+.+.++|.+++.|+.++.+.+|.-++-. + .+.
T Consensus 193 ~di~aV~DW-------~qTLSFy~LsG~~Igk~--r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr-L---GTv 259 (1081)
T KOG1538|consen 193 NDILAVADW-------GQTLSFYQLSGKQIGKD--RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR-L---GTV 259 (1081)
T ss_pred cceEEEEec-------cceeEEEEecceeeccc--ccCCCCchhheeccCCcEEEEccCCCceEEEeecCeE-E---eec
Confidence 45666665 77888887764322111 1223456789999999999999999999999866531 1 121
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
. ....+|+.++..|++++++.|+.||+|-.|++.
T Consensus 260 g--~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 260 G--EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred c--ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 1 234679999999999999999999999999875
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=3.4e-21 Score=176.74 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=210.6
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
+.++.|.||...|+|+.|... |+++++|+.|..|+||.. .+..+.....||.+.|+.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~--et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSM--ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeec--cchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 455678899999999999999 999999999999999997 44588999999999999999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE---ec-cCCCCEeEEEEeeCCCEEE
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE---YI-QSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~l~ 290 (442)
+|.+..+..+..+. |.+.|++++|+|-- +.+.||++++||.+-.-.+.. ++ ....-+.++.|..++..++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99999999998887 99999999999962 778899999999872111111 11 1224567788888899999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEec-CCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHH-PFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+++. |+.-..|.+.....-.. .+.-+..+ ....+.+++-.+..+.+|++..+..... +.+|
T Consensus 333 Tgs~-------d~ea~n~e~~~l~~~~~-------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~---l~gh- 394 (1113)
T KOG0644|consen 333 TGSR-------DGEARNHEFEQLAWRSN-------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN---LMGH- 394 (1113)
T ss_pred cccC-------CcccccchhhHhhhhcc-------ceEEEeccccccccceeeeeeeEeeeeecccchhhhh---hccc-
Confidence 9998 88888887654211100 01111111 1124555666778899999988765532 2333
Q ss_pred cccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 370 VSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 370 ~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
...+..+.++| +.+...+++.||.+.|||+-.|.+++.+....+.+.+.+|+++| ..++....-|.++|.
T Consensus 395 -sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 395 -SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYIL 465 (1113)
T ss_pred -ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC-ceEecCCCCCceEEe
Confidence 35567788999 44556688999999999999887776655435667788999998 566666666777764
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=6.3e-19 Score=143.06 Aligned_cols=287 Identities=13% Similarity=0.166 Sum_probs=204.8
Q ss_pred ceecccccccceEEEEee--CCCCCEEEEec----CCCcEEEEEcccCCcceeeee-ccCCCceeEEEeCCCC-----CE
Q 013475 137 LSTALCHHTKAVNSINWS--PTHAHLLASAG----MDQSICIWNVWSRDQKLARVL-NFHSAAVNDVKWSQQG-----LF 204 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s--~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~~~-----~~ 204 (442)
.+..+..+ -.++++.|+ ++.+.+||.|+ ..+.|.|-.+.....+.+..- ..|..+++.+.|.|+. .+
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 34444443 467899998 34456888887 356788887765444433222 2489999999999975 35
Q ss_pred EEEEecCCcEEEEECCCCcEE----------EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc---eEEEec
Q 013475 205 VLSCGYDCSSRLVDVEKGIET----------QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK---VAHEYI 271 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~ 271 (442)
|+++ +..+++|.+...+.. +.-++..++++..|+.-+.++|.+++-|-+..|||++++. ....+.
T Consensus 116 LATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 5554 356999998742111 1112567899999998888999999999999999999863 356778
Q ss_pred cCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cc-cceeeeEEecCCCCe-eEE-EeCCC
Q 013475 272 QSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VE-AYTCPCVRHHPFDPY-FVA-QSNGN 346 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~-l~~-~~~~~ 346 (442)
.|...|.+++|...+ +.|++.+. ||.|++||++....-..+.. .. ......++|++.... +++ +....
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvga-------DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGA-------DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ecCcceeEEEeccCccceEEEecC-------CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 999999999999855 57888887 99999999997543222111 11 346777888887654 444 55667
Q ss_pred eEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCce------eeEeeeccCCceeEE
Q 013475 347 YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSE------LERKIKAYEQACIDV 419 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~ 419 (442)
.|.+.|++..... +..++ .|.+.|..++|.| ....|++++.|..+.|||+...- ++..+. -.+.|+.+
T Consensus 267 ~V~iLDiR~P~tp--va~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi 341 (364)
T KOG0290|consen 267 KVVILDIRVPCTP--VARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQI 341 (364)
T ss_pred eEEEEEecCCCcc--eehhh--cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeee
Confidence 8999999865432 23444 4457799999999 56799999999999999997531 122222 36789999
Q ss_pred EEcCCCCCEEEEeeCCCcEE
Q 013475 420 AFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~dg~i~ 439 (442)
.|++..+..|+.+. ++.+.
T Consensus 342 ~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 342 QWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred eecccCCCEEEEEe-cCeee
Confidence 99988778888886 44443
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=147.05 Aligned_cols=240 Identities=17% Similarity=0.262 Sum_probs=170.0
Q ss_pred ccCCcceeccc-ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee-----ccCCCceeEEEeCC--CCC
Q 013475 132 KIPGRLSTALC-HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL-----NFHSAAVNDVKWSQ--QGL 203 (442)
Q Consensus 132 ~~~~~~~~~l~-~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~~~--~~~ 203 (442)
..+-+++..|. .|-+.|.|+.|.|+ +..|++-. |..|.+|++.+.... ...+ .+|....++-+|+| +++
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccc
Confidence 33456666676 67779999999998 77777765 789999999765432 2222 23566788889999 788
Q ss_pred EEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEE
Q 013475 204 FVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDV 280 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~ 280 (442)
.+++.+ |+++..||+++.++...+. |...|..+.|+|+-..+|++|+.||.|+|||.++- .++.++.+|...|.++
T Consensus 186 qv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 186 QVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred eEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 888765 9999999999999888887 88899999999998899999999999999999864 5788999999999999
Q ss_pred EEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 281 EFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 281 ~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
.|+|.. +++++++. |..|.+|....-.....+.......-. ++.. ....++ ...-
T Consensus 265 Rfn~~hdqLiLs~~S-------Ds~V~Lsca~svSSE~qi~~~~dese~-----e~~d------seer~k------pL~d 320 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGS-------DSAVNLSCASSVSSEQQIEFEDDESES-----EDED------SEERVK------PLQD 320 (370)
T ss_pred EecCccceEEEecCC-------CceeEEEeccccccccccccccccccC-----cchh------hHHhcc------cccc
Confidence 999964 56677776 999999987653322222211110000 0000 000000 0000
Q ss_pred ccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecC
Q 013475 360 DKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~ 401 (442)
..+..+.. +...|.+++||. |--.||+-+.||.+.|=.+.
T Consensus 321 g~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 321 GQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11233333 346789999998 44566778999999887664
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.7e-18 Score=160.04 Aligned_cols=260 Identities=15% Similarity=0.195 Sum_probs=190.2
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCCcE--EEe-----eeCCcceEEEEE
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKGIE--TQS-----FREELAVRVVKF 239 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~--~~~-----~~~~~~v~~~~~ 239 (442)
+.+.||+++.. ......+. -...|.++.|+| +.++|+.|..+|+|.+||+..+.. ... -.|...++.+.|
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999776 45555555 678999999999 677888888999999999988755 222 227889999999
Q ss_pred ccCC-CCEEEEeeCCCcEEEEECCCCce-E-----EEec------cCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeE
Q 013475 240 HPEN-SNLFLSGGSKGLLRLWDIRTGKV-A-----HEYI------QSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 240 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~-~-----~~~~------~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i 305 (442)
..+. ..-|++++.||.|..|+++.-.. . .... .....++++.|.+ +-..|+.|++ +|.|
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe-------~G~v 372 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE-------EGKV 372 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC-------CcEE
Confidence 7652 13488899999999999875322 1 0111 1223678899977 4567888888 8988
Q ss_pred EEEeCCCCccc-------ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC-CCcccccceeEeecccccCcEEE
Q 013475 306 VVWDVSREVPL-------SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST-PPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 306 ~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
.--+-...... ......+...+.++.++|.+..++..+.|.+++||... ....+ +....+..+++++
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl-----~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL-----LSLDSSPDYVTDV 447 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc-----hhhhhccceeeee
Confidence 87443332211 22334566789999999999887777779999999987 33222 1112334568999
Q ss_pred EEccC-CCEEEEecCCCcEEEEecCCc--eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 378 SFSLD-GEKLVSGSSDGSIYFYNCRSS--ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 378 ~~s~~-g~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+|||- -..|+++..||.|.|||+... .++.+.+.+....+.+.|++.| .+|+.|+..|.+++|+
T Consensus 448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEE
Confidence 99995 467888999999999999653 4555555556677788899988 7999999999999985
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.3e-18 Score=157.31 Aligned_cols=301 Identities=18% Similarity=0.193 Sum_probs=220.8
Q ss_pred ccCCcceecccccccceEEEEeeCCCC--CEEEEecCCCcEEEEEcccCCcc----------------------------
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHA--HLLASAGMDQSICIWNVWSRDQK---------------------------- 181 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~--~~l~s~~~dg~i~iwd~~~~~~~---------------------------- 181 (442)
...+.+++.|.+|..+++.+.+.|... .++++++.||.|++||.......
T Consensus 44 ~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s 123 (792)
T KOG1963|consen 44 TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS 123 (792)
T ss_pred cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee
Confidence 345788889999999999999998754 57789999999999997321000
Q ss_pred -----------------------------------------e-----------------e---------ee------ecc
Q 013475 182 -----------------------------------------L-----------------A---------RV------LNF 188 (442)
Q Consensus 182 -----------------------------------------~-----------------~---------~~------~~~ 188 (442)
. . +. -..
T Consensus 124 ~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 203 (792)
T KOG1963|consen 124 VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVH 203 (792)
T ss_pred cccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhh
Confidence 0 0 00 001
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCC--C--cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK--G--IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
|...+++.+++|++++++++..||.|.+|.--. + .....+. |...|+++.|+++| .+|++|+..|.+.+|.+.+
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecC
Confidence 555688999999999999999999999996433 1 2334455 88999999999997 8999999999999999999
Q ss_pred CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce---eecc-------ccceeeeEEec
Q 013475 264 GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK---QVYV-------EAYTCPCVRHH 333 (442)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~---~~~~-------~~~~~~~~~~~ 333 (442)
++ .+-+..-.++|..+.++||+.+.+.... |+.|.+....+...... +... ...-.+.+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~-------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLE-------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEec-------CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 87 3334455689999999999999999888 99999998755332222 1111 23346678889
Q ss_pred CCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccc------cCcEEEEEccCCCEEEEec--------CC--CcEEE
Q 013475 334 PFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS------GFPIKCSFSLDGEKLVSGS--------SD--GSIYF 397 (442)
Q Consensus 334 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~g~~l~~g~--------~d--g~i~i 397 (442)
|.-+.++..+..+.|.+||+.+...+.++.....+... ..++.++.+..|.++++.- .| -.+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 98888899999999999999988777655544433332 3466778888899999863 23 35788
Q ss_pred EecCCce----eeEee-eccCCceeEEEE-cCCCCCEEEEeeCCCcEEEc
Q 013475 398 YNCRSSE----LERKI-KAYEQACIDVAF-HPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 398 wd~~~~~----~~~~~-~~~~~~v~~~~~-~p~~~~~l~s~~~dg~i~iw 441 (442)
|-..... +...+ ..|...+...+| ++.....+++++.||.++||
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 9765432 22222 357665555555 44442389999999999999
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9.6e-19 Score=164.81 Aligned_cols=285 Identities=16% Similarity=0.171 Sum_probs=200.0
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc---CCCceeEEEeCC--CCCEEEEEecCCcEEEE
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF---HSAAVNDVKWSQ--QGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~~~~--~~~~l~s~~~d~~v~vw 217 (442)
+....-..+.|+|- ...++++...-.|+|||.+.+ +....|.. ....|+.+.+-. |..++++|+.||.|+||
T Consensus 1062 ~n~~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPF-EPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred cCCCCCceeeecCC-CceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 33445677889998 777888887779999999443 55544442 245788888876 56789999999999999
Q ss_pred ECC-C----CcEEEeee--------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-CCCCEeEEEEe
Q 013475 218 DVE-K----GIETQSFR--------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-SLGPILDVEFT 283 (442)
Q Consensus 218 d~~-~----~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~ 283 (442)
+-- . .+.+..+. ..+.-.-+.|.... .+|+++|.-..|+|||......+..+.. ...-|+++.-+
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence 642 2 22332222 11111345677764 4555555578999999988877766643 34466766654
Q ss_pred e-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--cceeeccccce--eeeEEecCCCCe-eEEEeCCCeEEEeeCCCCc
Q 013475 284 I-NGKQFVSSSDVSGSNMSENSIVVWDVSREVP--LSKQVYVEAYT--CPCVRHHPFDPY-FVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 284 ~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~~~~i~i~~~~~~~ 357 (442)
- .|+.+++|.. ||.|++||.+.... .......|... |..+.+.+.|-. +++|+.+|.|++||++...
T Consensus 1218 ~~~gn~i~AGfa-------DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFA-------DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ccCCceEEEeec-------CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 3 4689999998 99999999987543 22222233333 888888886654 9999999999999999863
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-------CCceeEEEEcCCCCCEEE
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-------EQACIDVAFHPILPNIIG 430 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~ 430 (442)
....+.........+..+++..+++...||+|+. +.|+||++. |+.+..++.+ .+.+.+++|||.. -+||
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llA 1367 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLA 1367 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh-Hhhh
Confidence 3322222221111234789999999999999998 999999986 5555544432 3567999999997 6899
Q ss_pred EeeCCCcEEEc
Q 013475 431 SCSWNGDVSVY 441 (442)
Q Consensus 431 s~~~dg~i~iw 441 (442)
.|+.|..|.||
T Consensus 1368 aG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1368 AGSADSTVSIY 1378 (1387)
T ss_pred hccCCceEEEe
Confidence 99999999987
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=7.2e-19 Score=162.56 Aligned_cols=248 Identities=17% Similarity=0.223 Sum_probs=184.1
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceee----eeccCCCceeEEEeCCCC--CEEEEEecCCcEEEE
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR----VLNFHSAAVNDVKWSQQG--LFVLSCGYDCSSRLV 217 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~h~~~v~~l~~~~~~--~~l~s~~~d~~v~vw 217 (442)
-...|+|+.|+|.+.++|+.|..+|.|.+||+......+.. ....|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 45789999999998999999999999999999765443222 233588999999998754 449999999999999
Q ss_pred ECCCCcEEE-------------eeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC--------ceEEEeccCCCC
Q 013475 218 DVEKGIETQ-------------SFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG--------KVAHEYIQSLGP 276 (442)
Q Consensus 218 d~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~ 276 (442)
+++.-.... .......++++.|.+...+.|++|+++|.|..-+-... +....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 887543211 11234568999999988899999999999887433221 123355678899
Q ss_pred EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC-CCcccceeeccccceeeeEEecCCCCe-eEEEeCCCeEEEeeCC
Q 013475 277 ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS-REVPLSKQVYVEAYTCPCVRHHPFDPY-FVAQSNGNYIAIFSST 354 (442)
Q Consensus 277 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~i~i~~~~ 354 (442)
|..+.++|-+..++..+. |.+++||... ...++.. ...+...+.+++|+|.... |+++..+|.+.+||+.
T Consensus 401 v~~v~~nPF~~k~fls~g-------DW~vriWs~~~~~~Pl~~-~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-------DWTVRIWSEDVIASPLLS-LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eEeeecCCCccceeeeec-------cceeEeccccCCCCcchh-hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 999999998766666655 9999999988 4443333 3333445899999998764 5567779999999997
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
............. ......+.|+++|+.|++|+..|.+++|++..
T Consensus 473 ~~~~~Pv~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccCCccccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 6544322111111 34456788899999999999999999999863
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=4.5e-19 Score=165.17 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=166.9
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCC
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPEN 243 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (442)
+..|.+||.... . ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++........+....++|+|+|
T Consensus 183 ~~~i~i~d~dg~--~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGF--N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCC--C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 468999998443 2 34556688889999999999999988754 36999999988654333333445578999998
Q ss_pred CCEEEEeeCCCcEEE--EECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec
Q 013475 244 SNLFLSGGSKGLLRL--WDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY 321 (442)
Q Consensus 244 ~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 321 (442)
..++++...+|.+.| ||+.+++ ...+..+...+....|+|||+.|+..+. .++...||++..........
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~------~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD------RSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC------CCCCceEEEEECCCCCeEEe-
Confidence 444445556776555 5665554 4556666677889999999998876653 26778888775432222222
Q ss_pred cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec-
Q 013475 322 VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC- 400 (442)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~- 400 (442)
.+.. ....|+|++++++..+.++ +.+||+.++.... +... .....+.|+|||++|+.++.+|.+.+|++
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~----lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV----LSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE----ecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 1221 4578999999998877754 5568987754321 1111 11235789999999999999998888875
Q ss_pred -CCceeeEeeeccCCceeEEEEcCC
Q 013475 401 -RSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 401 -~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
.+++.+..+..|.+.+...+|+|-
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 357888889888888999999985
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-18 Score=148.44 Aligned_cols=196 Identities=21% Similarity=0.288 Sum_probs=151.2
Q ss_pred EEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 235 RVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
.+++|+.+| ..+++|+.||++|+|+..+...+.....|...|.++.|+|||+.|++.+. | ..+||+.+++.
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-------d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-------D-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-------C-ceEEEEeccCc
Confidence 789999996 89999999999999998888877788889999999999999999999997 7 99999999997
Q ss_pred ccceee-ccccceeeeEEecCCC---CeeEE--EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEE
Q 013475 315 PLSKQV-YVEAYTCPCVRHHPFD---PYFVA--QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVS 388 (442)
Q Consensus 315 ~~~~~~-~~~~~~~~~~~~~~~~---~~l~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 388 (442)
.+.... .........+.|+.++ .+++. ....+.|..|++.....-..++..+.......+.+++.|.+|++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 766655 3444556667777766 33333 34455666666543322111111111122245889999999999999
Q ss_pred ecCCCcEEEEecCCceeeEeee-ccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 389 GSSDGSIYFYNCRSSELERKIK-AYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 389 g~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
|+.||.|-|++..+.+.++-++ .|...|+.+.|+|+. +++++.+.|..+.|
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v 350 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAV 350 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeE
Confidence 9999999999999887776654 789999999999998 78888888877665
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=5.6e-19 Score=157.83 Aligned_cols=237 Identities=11% Similarity=0.183 Sum_probs=171.3
Q ss_pred CCEEEE--ecCCCcEEEEEcccCCcceeeeecc--CCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCCc-------EE
Q 013475 158 AHLLAS--AGMDQSICIWNVWSRDQKLARVLNF--HSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKGI-------ET 225 (442)
Q Consensus 158 ~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~-------~~ 225 (442)
...+|. .+..|.|-||++.......-..+.+ ....|+.+.|.| |...|++++.||.|++|.+..+. ..
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 444443 3557899999996553332222221 456899999999 88899999999999999987642 33
Q ss_pred Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 226 QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 226 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
..+. |...|+.+.|+|--.++|++++.|.+|++||+++++....+.+|.+.|.+++|+|+|+.+++.+. ||+
T Consensus 671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-------Dg~ 743 (1012)
T KOG1445|consen 671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-------DGT 743 (1012)
T ss_pred eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec-------Cce
Confidence 4444 88899999999988899999999999999999999999999999999999999999999999998 999
Q ss_pred EEEEeCCCCcc-cceeeccccceeeeEEecCCCCeeEEEeCC----CeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 305 IVVWDVSREVP-LSKQVYVEAYTCPCVRHHPFDPYFVAQSNG----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 305 i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
|++|+.+.... +..-.......-..+.|.-+|.++++.+.| ..|.+|+........ +...... ..-.+.--.+
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p-l~t~~lD-vaps~LvP~Y 821 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP-LYTQVLD-VAPSPLVPHY 821 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc-ceeeeec-ccCccccccc
Confidence 99999987553 333222333455667888899988886655 467778765432110 0111000 0011111234
Q ss_pred ccCC-CEEEEecCCCcEEEEecCCc
Q 013475 380 SLDG-EKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 380 s~~g-~~l~~g~~dg~i~iwd~~~~ 403 (442)
.+|. -+|++|-.|..|++|.+-..
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEecCC
Confidence 4444 46678888999999987643
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.83 E-value=4.5e-18 Score=149.29 Aligned_cols=245 Identities=18% Similarity=0.217 Sum_probs=165.6
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC--ccee--eeeccCCCceeEEEe-----CCCCCEEEEEecCCcEEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRD--QKLA--RVLNFHSAAVNDVKW-----SQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~--~~~~~h~~~v~~l~~-----~~~~~~l~s~~~d~~v~vw 217 (442)
.++...++-. |.+|+-.- ...+.+|+..... ...+ ..+++ ....|=+| .+.+--|+.+-.-|.|.+.
T Consensus 125 ~~~~~~~~~~-gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 125 IVTNTNQSGK-GDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLI 200 (636)
T ss_pred ceeeccccCC-CCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEe
Confidence 4445555555 55554433 2468888875321 1111 22221 22233344 3456678888888999999
Q ss_pred ECCCCcEEEeee-----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec
Q 013475 218 DVEKGIETQSFR-----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 218 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (442)
|....+..+.+. .+..|+|+.|.|.+..+|+++-.+|.+++||... ...... .+-...+++..|...
T Consensus 201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~-p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATA-PSYQALKDGDQFAIL 272 (636)
T ss_pred cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCC-CcccccCCCCeeEEe
Confidence 987644333332 4578999999998889999999999999999721 111000 111122345444443
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccccc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSG 372 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
.. .+ -.+..++........ .+..++|+|||++|++.+.|+.++||+..+...+..++.+- +
T Consensus 273 t~-------ks------k~~rNPv~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----G 333 (636)
T KOG2394|consen 273 TS-------KS------KKTRNPVARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----G 333 (636)
T ss_pred ee-------ec------cccCCccceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----c
Confidence 32 00 001123333332222 78889999999999999999999999999877665555443 4
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
...|++|||||+||++|++|..|.||.+...+.+..-++|...|+.|+|.
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 47899999999999999999999999999999999999999999999998
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=8.9e-18 Score=151.89 Aligned_cols=252 Identities=13% Similarity=0.152 Sum_probs=168.6
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEe-cCCCcEEEEEccc-CCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCc
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASA-GMDQSICIWNVWS-RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCS 213 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~ 213 (442)
.+.++. +.+....++++|+ +++|+++ ..++.|.+|++.. +......... .......++|+|++++|++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 334443 3466788999999 8877665 4588999999962 2122233332 3345778999999999998875 889
Q ss_pred EEEEECCC-C---cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE-------EeccCCCCEeEEEE
Q 013475 214 SRLVDVEK-G---IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH-------EYIQSLGPILDVEF 282 (442)
Q Consensus 214 v~vwd~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~ 282 (442)
|.+|++++ + +.+..+.+.....+++++|++..++++...++.|.+||+.+...+. .... ......+.|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEE
Confidence 99999974 3 2233333445578889999985555666777999999997633221 1111 234578999
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCC--cc--cceeecc-----ccceeeeEEecCCCCeeEEEeC-CCeEEEee
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSRE--VP--LSKQVYV-----EAYTCPCVRHHPFDPYFVAQSN-GNYIAIFS 352 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~--~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-~~~i~i~~ 352 (442)
+|+|++++++.. .++.|.+|++... .. +...... .......+.++|++++++++.. ++.|.+|+
T Consensus 183 ~pdg~~lyv~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 183 HPNQQYAYCVNE------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CCCCCEEEEEec------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 999999877764 2899999999742 21 1111110 1112235889999999988754 78999999
Q ss_pred CCCCccccc-ceeEeecccccCcEEEEEccCCCEEEEecC-CCcEEEEecC
Q 013475 353 STPPFRLDK-FKRYESHGVSGFPIKCSFSLDGEKLVSGSS-DGSIYFYNCR 401 (442)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~iwd~~ 401 (442)
++....... ..... ....+..+.|+++|++|+++.. +++|.+|+++
T Consensus 257 i~~~~~~~~~~~~~~---~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVLSFEGHQP---TETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeEEEeEEEe---ccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 865432111 11111 1124567899999999998775 8899999875
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=8.3e-19 Score=142.36 Aligned_cols=242 Identities=16% Similarity=0.267 Sum_probs=180.2
Q ss_pred ccccceEEEEeeCCC----CCEEEEecCCCcEEEEEcccCCc--ceeeee-----ccCCCceeEEEeCC-CCCEEEEEec
Q 013475 143 HHTKAVNSINWSPTH----AHLLASAGMDQSICIWNVWSRDQ--KLARVL-----NFHSAAVNDVKWSQ-QGLFVLSCGY 210 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~-----~~h~~~v~~l~~~~-~~~~l~s~~~ 210 (442)
.|.-+++.+.|.|+. ..+|||.+ ..+|||.+...+. .+...+ ..+..++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688899999999983 24677665 3899999863222 222222 23567899999998 7789999999
Q ss_pred CCcEEEEECCCCc----EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE---EEeccCCCCEeEEEEe
Q 013475 211 DCSSRLVDVEKGI----ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA---HEYIQSLGPILDVEFT 283 (442)
Q Consensus 211 d~~v~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~ 283 (442)
|-+..|||++++. ..+.+.|+..|..++|...+..+|++.+.||.|++||++..+.- .+-.....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999973 34455699999999999988899999999999999999976532 2222224578889998
Q ss_pred eCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCccccc
Q 013475 284 ING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 284 ~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
++. +++++-.. ....|.|.|++...........|...+..++|.|... .+++++.|..+.+||+........
T Consensus 252 kqDpnymATf~~------dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 252 KQDPNYMATFAM------DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred cCCchHHhhhhc------CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 855 55555443 2578999999998766666778888999999999764 677799999999999987554211
Q ss_pred ceeEeecccccCcEEEEEcc-CCCEEEEecCC
Q 013475 362 FKRYESHGVSGFPIKCSFSL-DGEKLVSGSSD 392 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d 392 (442)
..........+.|..+.|++ .+.+|+++...
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 11111122345688999996 67788877643
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.1e-16 Score=134.53 Aligned_cols=239 Identities=13% Similarity=0.159 Sum_probs=182.3
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC--CcEEEEECCCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD--CSSRLVDVEKG 222 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~v~vwd~~~~ 222 (442)
...++.+.|+.+ ...|..|+.|| .++|+.+.-. + ..........|..+-|+.. +++..+.+ ..+++++++.+
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~-k-~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFE-K-CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchH-H-hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 456777889998 88888888886 5777764331 2 1111223345666667654 66665554 45999999999
Q ss_pred cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc---CCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 223 IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ---SLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
..+..+.....|.++.++. +.|+++-++ .|+|||+++.+.++++.. +...+..++++..+.+++.-+..
T Consensus 79 ~~ICe~~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~---- 150 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST---- 150 (391)
T ss_pred ceEEEEecCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC----
Confidence 9999999999999999975 445555554 499999999999888754 34456677777777788876531
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCe-EEEeeCCCCcccccceeEeecccccCcEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY-IAIFSSTPPFRLDKFKRYESHGVSGFPIKCS 378 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 378 (442)
..|.|.+||..+-+.+..+. .|...+.+++|+++|.+|++++..|+ |++|.+.++.++..++ .......|.+++
T Consensus 151 -t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR---RG~~~~~IySL~ 225 (391)
T KOG2110|consen 151 -TSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR---RGTYPVSIYSLS 225 (391)
T ss_pred -CCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee---CCceeeEEEEEE
Confidence 27999999999988777766 78889999999999999999998885 7999999887774433 223346688999
Q ss_pred EccCCCEEEEecCCCcEEEEecCC
Q 013475 379 FSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 379 ~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
|++++.+|++.+..++|+||.++.
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999998863
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=4.6e-18 Score=139.99 Aligned_cols=255 Identities=15% Similarity=0.243 Sum_probs=186.7
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
.+.--..+|+|.+|++| +..+|.+..+..|.||.....+ .+...+++.|...|++|+|+|..+.|++|+.|..-+||.
T Consensus 5 ~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 33444679999999999 9999999999999999987776 688899999999999999999999999999999999999
Q ss_pred C-CCCc---EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce----EEEeccCCCCEeEEEEeeCCCEEE
Q 013475 219 V-EKGI---ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV----AHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 219 ~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
. ..++ .+..+++...++++.|+|.+ +.|++|+.-..|.||-++..+. .+.-+.+.+.|.++.|+|++-+|+
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 9 4443 33445589999999999995 9999999999999998765432 122245667899999999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
.|+. |+..++|..--...-.+- +-.| |+.+..+-. .+.++. ..
T Consensus 163 aGs~-------D~k~rVfSayIK~Vdekp-----------ap~p----------------Wgsk~PFG~-lm~E~~--~~ 205 (361)
T KOG1523|consen 163 AGST-------DGKCRVFSAYIKGVDEKP-----------APTP----------------WGSKMPFGQ-LMSEAS--SS 205 (361)
T ss_pred cccc-------CcceeEEEEeeeccccCC-----------CCCC----------------CccCCcHHH-HHHhhc--cC
Confidence 9998 999999875321110000 0001 111110000 001111 33
Q ss_pred ccCcEEEEEccCCCEEEEecCCCcEEEEecCCce-eeEeeeccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE-LERKIKAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
.+.+..+.|+|+|..|+-.+.|..+.+-|..... .+..+..-.-+..++.|-.+. .++.++.|
T Consensus 206 ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~ 269 (361)
T KOG1523|consen 206 GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYD 269 (361)
T ss_pred CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCC
Confidence 4778899999999999999999999999977654 344444334667777776553 34444444
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=3.3e-20 Score=170.40 Aligned_cols=239 Identities=16% Similarity=0.226 Sum_probs=194.6
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
+.++.+.+|.+.|+|+.|...|.++++|+.|..|+||.++++.++.... |.+.++.++.+.++ .++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEE
Confidence 4455667899999999999999999999999999999999999999888 89999999999874 889999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc---cceeeccccceeeeEEecCCC
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP---LSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 336 (442)
.+..+.++..+.+|.+.|++++|+|-. +.+. ||++++||.+-.-. ...........+.++.+...+
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~-------dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSD-------DGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCC-------CCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 999999999999999999999999865 5555 99999999982111 111223344567788888889
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC-CEEEEecCCCcEEEEecCCceeeEeeeccCCc
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELERKIKAYEQA 415 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 415 (442)
..+++++.++.-..|........... +.-+.++.+- .+.++.-.+-.+.+|++.+|.+++.+.+|...
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~-----------lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNL-----------LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccc-----------eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 99999999998888876532211110 1111122222 45666667888999999999999999999999
Q ss_pred eeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 416 CIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+..+.++|-++.+..+++.||...|||
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeee
Confidence 999999999888889999999999997
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.80 E-value=3.8e-16 Score=140.75 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=179.4
Q ss_pred CEE-EEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEE
Q 013475 159 HLL-ASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVV 237 (442)
Q Consensus 159 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~ 237 (442)
+++ ++-..+|.|.|.|.. ..+.+..+......-..+.|++|++++++++.||.|.++|+.+++.+.+++.......+
T Consensus 6 ~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 444 455678999999984 45777777754444455789999999999999999999999999999999988889999
Q ss_pred EEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC-------CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeC
Q 013475 238 KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-------LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDV 310 (442)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 310 (442)
+++++|..++++....+.+.++|.++.+.++.+... ...+..+..++....++..-. ..+.|.+.|.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk------d~~~I~vVdy 157 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK------DTGEIWVVDY 157 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET------TTTEEEEEET
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc------cCCeEEEEEe
Confidence 999998555556667899999999999988877432 346778888888886655543 1588888898
Q ss_pred CCCcccceeeccccceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCccccccee-------------------------
Q 013475 311 SREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPFRLDKFKR------------------------- 364 (442)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~------------------------- 364 (442)
.....+...............|+|++++++++ ...+.|.++|..+......+..
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 87655544444444456678999999987764 5567888888766433211100
Q ss_pred ------------------------EeecccccCcEEEEEccCCCEEEEe----cCCCcEEEEecCCceeeEeeecc-CCc
Q 013475 365 ------------------------YESHGVSGFPIKCSFSLDGEKLVSG----SSDGSIYFYNCRSSELERKIKAY-EQA 415 (442)
Q Consensus 365 ------------------------~~~~~~~~~v~~~~~s~~g~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~-~~~ 415 (442)
...-...+...-+..+|+++++.+. ...+.|.|+|.++.+.+.++... ...
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~ 317 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKR 317 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCc
Confidence 0000001111336779999999987 45688999999999888777543 235
Q ss_pred eeEEEEcCCCCCEEEEeeCCC-cEEEcC
Q 013475 416 CIDVAFHPILPNIIGSCSWNG-DVSVYE 442 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg-~i~iwd 442 (442)
+..+.|+++|..+.+|.-.++ .|.|||
T Consensus 318 ~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 318 VVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 999999999965555554444 798886
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.8e-18 Score=150.53 Aligned_cols=209 Identities=18% Similarity=0.316 Sum_probs=164.7
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVV 237 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~ 237 (442)
...|+.++.||.+.|.+ ...+....+..|.+.|.+-.|++||.-|++++.||.|++|.-...-.....+....|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~---k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN---KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEec---ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEE
Confidence 34677888899999987 456777788899999999999999999999999999999995443333333468889999
Q ss_pred EEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc
Q 013475 238 KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS 317 (442)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 317 (442)
+|.|+..+.+++.+ +.+.|=-+.....+-.++.|.+-|.++.|++..+.+++++. |-..++||-......
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE-------D~kfKvWD~~G~~Lf- 221 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE-------DFRFKIWDAQGANLF- 221 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC-------ceeEEeecccCcccc-
Confidence 99999767766654 45666666666667788999999999999999999999999 999999998654322
Q ss_pred eeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEE
Q 013475 318 KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYF 397 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i 397 (442)
....+...+++++|.|+ +.+++++.+ ++++- ....+.|..++||+||..+++|+..|.+.+
T Consensus 222 -~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~----------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 222 -TSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS----------------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -cCChhccceeeeeeccc-cceeeeeee-eeeec----------------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 33456778999999999 656555432 22211 122366889999999999999999998766
Q ss_pred E
Q 013475 398 Y 398 (442)
Q Consensus 398 w 398 (442)
=
T Consensus 283 A 283 (737)
T KOG1524|consen 283 A 283 (737)
T ss_pred e
Confidence 4
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1e-16 Score=134.62 Aligned_cols=231 Identities=15% Similarity=0.184 Sum_probs=176.5
Q ss_pred CCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE-EeeeCCcceEEEEEccCCCCEEEEeeCC--CcEEEEECCCCce
Q 013475 190 SAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET-QSFREELAVRVVKFHPENSNLFLSGGSK--GLLRLWDIRTGKV 266 (442)
Q Consensus 190 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~ 266 (442)
...+..+.|+.+...|..|+.|| .++|+.+..... ........|..+-|+. .+++..+.+ ..+++++++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34567777999988888888888 788887765432 2222455677777875 455544443 3599999998887
Q ss_pred EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc--ccceeeeEEecCCCCeeEE--E
Q 013475 267 AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV--EAYTCPCVRHHPFDPYFVA--Q 342 (442)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~--~ 342 (442)
+..+.-. ..|.++.++ .+.|+++- ...|+|||+++.+.+.++... +...+..+.++..+.+++. .
T Consensus 81 ICe~~fp-t~IL~VrmN--r~RLvV~L--------ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 81 ICEIFFP-TSILAVRMN--RKRLVVCL--------EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred EEEEecC-CceEEEEEc--cceEEEEE--------cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 7776543 678888885 45666666 456999999999988887766 4445666777777778887 4
Q ss_pred eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCc-EEEEecCCceeeEeeecc--CCceeEE
Q 013475 343 SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGS-IYFYNCRSSELERKIKAY--EQACIDV 419 (442)
Q Consensus 343 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~ 419 (442)
...|.|.+||..+.... ..+. .|.+.+-+++|+++|.+||++++.|+ |+||.+.+|+.+.+|+.- ...|.++
T Consensus 150 ~t~GdV~l~d~~nl~~v---~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL 224 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPV---NTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL 224 (391)
T ss_pred CCCceEEEEEcccceee---eEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence 45789999999876544 3333 55688999999999999999999997 789999999999999743 3468899
Q ss_pred EEcCCCCCEEEEeeCCCcEEEc
Q 013475 420 AFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+|++++ .+|++.|..++|+||
T Consensus 225 ~Fs~ds-~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 225 SFSPDS-QFLAASSNTETVHIF 245 (391)
T ss_pred EECCCC-CeEEEecCCCeEEEE
Confidence 999999 799999999999987
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=147.65 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=158.8
Q ss_pred EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEee
Q 013475 149 NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF 228 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 228 (442)
.+++|+.+ |..|++|+.||++|||++ .....+.....|.+.|.++.|+||+++|++.+.| ..+||+++++..+...
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~--Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEW--PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEec--CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999 899999999999999998 4456666777799999999999999999999999 8999999999776665
Q ss_pred e---CCcceEEEEEccCC---CCEEEEe-eCCCcEEEEECCCCc-----eEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 229 R---EELAVRVVKFHPEN---SNLFLSG-GSKGLLRLWDIRTGK-----VAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 229 ~---~~~~v~~~~~~~~~---~~~l~~~-~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
. .+.....+.|+.++ .-++++. ..-+.|+.||+.... ..++.......|++++.+.+|++++.|+.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~-- 301 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM-- 301 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc--
Confidence 5 34556778888764 2233332 334567776654221 11222233458999999999999999998
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
||.|.|++..+-+.+......|...|+.+.|+|+.++++..+.+....+..+..
T Consensus 302 -----dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 -----DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -----CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999888888888999999999999999999999999888887654
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.8e-17 Score=145.47 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=158.4
Q ss_pred cCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 133 IPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
..++..+...+|.+.|.|-.|+|| |.-|++++.||.|++|. ..+.+..++-....+|+|++|.|+.+.++.|. .+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWS---rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWS---RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEe---ccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 346777888999999999999999 88899999999999999 55677777777889999999999888777765 45
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
.+.|=-+.-...+...+ |++-|.++.|++. .+++++|++|-..++||- .|+.+..-..|..+|++++|+|+ +.++.
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCcc-ccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceee
Confidence 67777776655555555 9999999999998 499999999999999996 57788888889999999999999 77777
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
++. +++++= ....+.+..++|++||..+++|+..|.+.+-
T Consensus 244 ~S~--------nt~R~~------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 244 WSY--------NTARFS------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eee--------eeeeec------------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 774 555532 2334578899999999999999988877653
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.8e-16 Score=147.37 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=163.2
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec---CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCC
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY---DCSSRLVDVEKGIETQSFREELAVRVVKFHPENS 244 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (442)
..|.+||.+.. .. ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++..........+..+.|+|||.
T Consensus 179 ~~l~~~d~dg~--~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGY--NQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCC--CC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 36888887443 22 223336678999999999999987653 4579999999887655444445566789999985
Q ss_pred CEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC--eEEEEeCCCCcccceee
Q 013475 245 NLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN--SIVVWDVSREVPLSKQV 320 (442)
Q Consensus 245 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~ 320 (442)
.++++...+| .|++||+.+++.. .+..+...+....|+|||+.|+..+. .++ .|.++|+.++... .+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~------~~g~~~Iy~~d~~~g~~~-~l- 326 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSD------QAGRPQVYKVNINGGAPQ-RI- 326 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeC------CCCCceEEEEECCCCCeE-Ee-
Confidence 5555555555 4999999887654 34444456788999999999887775 133 4555566655332 22
Q ss_pred ccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCc---
Q 013475 321 YVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGS--- 394 (442)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--- 394 (442)
...........|+|+|++++..+.+ ..|.+||+.++... .+... .......|+|||++|+..+.++.
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~----~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EeCCC---CCCCCceECCCCCEEEEEEcCCCceE
Confidence 2223345678899999998876543 46888998766422 12111 11235789999999998887764
Q ss_pred EEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 395 IYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
++++++ +|+....+.+|.+.+...+|+|-
T Consensus 400 l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 400 LNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 677777 46666778888888999999973
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=1.2e-18 Score=150.12 Aligned_cols=230 Identities=14% Similarity=0.235 Sum_probs=191.4
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
-.-+.+.++.+ |.+|+.|+..|.|..+|+.+. .+...+. -...|.++.|..+.++|+++- ...++||| ..|..+
T Consensus 130 FGPY~~~ytrn-GrhlllgGrKGHlAa~Dw~t~--~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRN-GRHLLLGGRKGHLAAFDWVTK--KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTEL 203 (545)
T ss_pred cCCeeeeecCC-ccEEEecCCccceeeeecccc--eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEE
Confidence 34577889999 999999999999999999554 6666665 568899999999888887764 77899999 567888
Q ss_pred EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 226 QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
..++....|..+.|.|.. .+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|.. .|+|
T Consensus 204 HClk~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs-------nGtV 275 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS-------NGTV 275 (545)
T ss_pred eehhhcCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC-------CceE
Confidence 888888899999999984 88999999999999999999999999888899999999999999999988 9999
Q ss_pred EEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE
Q 013475 306 VVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK 385 (442)
Q Consensus 306 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 385 (442)
.+|.....+++..+. .|.+.|.++++.++|+|
T Consensus 276 SlWSP~skePLvKiL------------------------------------------------cH~g~V~siAv~~~G~Y 307 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKIL------------------------------------------------CHRGPVSSIAVDRGGRY 307 (545)
T ss_pred EecCCCCcchHHHHH------------------------------------------------hcCCCcceEEECCCCcE
Confidence 999998877654432 23466888999999999
Q ss_pred EEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 386 LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 386 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+++.+.|..++|||+++...+.++.. ......++||..| +||.+ ....|.||
T Consensus 308 MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw 359 (545)
T KOG1272|consen 308 MATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALS-YGDHVQIW 359 (545)
T ss_pred EeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeee-cCCeeeee
Confidence 99999999999999998877666655 4567888999886 55544 45567887
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.1e-17 Score=154.84 Aligned_cols=249 Identities=20% Similarity=0.226 Sum_probs=183.9
Q ss_pred cceEEEEeeCC-CCCEEEEecCCCcEEEEEcccC---Ccceeeeecc-------CCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 146 KAVNSINWSPT-HAHLLASAGMDQSICIWNVWSR---DQKLARVLNF-------HSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 146 ~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
..|+.+.+-.+ +..+|++|+.||.|+||+-... +.+++..+.+ ..+.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 46888887543 3668999999999999985332 2233333221 11222456787766677777778899
Q ss_pred EEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc---eEEEeccCCCC--EeEEEEeeCCC
Q 013475 215 RLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK---VAHEYIQSLGP--ILDVEFTINGK 287 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~~~~~~~~~ 287 (442)
+|||.+..+++..+. ....++++.-+..++++|++|..||.|++||.+... .+..++.|... |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 999999988888776 456688887776667999999999999999998643 46777888776 99999998765
Q ss_pred E-EEeccCCCCCcCCCCeEEEEeCCCCcccce--eeccc--cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc-
Q 013475 288 Q-FVSSSDVSGSNMSENSIVVWDVSREVPLSK--QVYVE--AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK- 361 (442)
Q Consensus 288 ~-l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~- 361 (442)
. |++++. +|.|++||++....... +..+- +...+++..|+....+++|+. +.|+||++.+......
T Consensus 1270 ~elvSgs~-------~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1270 GELVSGSQ-------DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred cceeeecc-------CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence 4 899998 99999999998532222 22222 234899999999999999988 9999999987543211
Q ss_pred -ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 362 -FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 362 -~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
...+.+ ...+.+.+++|+|..-++|+|+.|..|.||.....
T Consensus 1342 ~n~~F~~-q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 YNPGFMG-QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCccccc-CcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 111111 12345789999999999999999999999987654
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.3e-18 Score=150.28 Aligned_cols=224 Identities=19% Similarity=0.123 Sum_probs=161.7
Q ss_pred cCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc--------CCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 133 IPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--------RDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
..-+.+.+|.+|.++|.|+++.++ ++.+++|+.||+|+.|++-. ....+...+.||++.|..++++.....
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 346788999999999999999999 99999999999999996631 112456678899999999999999889
Q ss_pred EEEEecCCcEEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC-------C
Q 013475 205 VLSCGYDCSSRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-------L 274 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~ 274 (442)
|++|+.||++++|+...... .+|. ..+....+.+......+.++...-+.-.++++.....+..+... .
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999999887766 3333 34445666665443233344444444445555444443333211 1
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
..+.-+.++|.+...+++.. |+.|+++|..++..+....
T Consensus 490 ~~in~vVs~~~~~~~~~~he-------d~~Ir~~dn~~~~~l~s~~---------------------------------- 528 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHE-------DRSIRFFDNKTGKILHSMV---------------------------------- 528 (577)
T ss_pred CccceEEecCCCCeeEeccc-------CCceecccccccccchhee----------------------------------
Confidence 24566777777777777777 8888888877766543221
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE 413 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 413 (442)
.+...++++++.|+|-+|++|+.||.+++|.+....++.....|.
T Consensus 529 --------------a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 529 --------------AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred --------------eccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 222457788999999999999999999999988777776666553
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.6e-17 Score=153.36 Aligned_cols=233 Identities=14% Similarity=0.153 Sum_probs=157.5
Q ss_pred CccccccCCcceecccccccceEEEEeeCCCCCEEEEecCC---CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCC
Q 013475 127 HVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMD---QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203 (442)
Q Consensus 127 ~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 203 (442)
....+...+...+.+..|...|.+.+|||| |+.|+..+.+ ..|++||+.++....+..+.+| ...++|+|||+
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~ 260 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS 260 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC
Confidence 444455566667778889999999999999 8878776543 3699999976544445445444 34689999999
Q ss_pred EEEEEe-cCCcEEE--EECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeE
Q 013475 204 FVLSCG-YDCSSRL--VDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILD 279 (442)
Q Consensus 204 ~l~s~~-~d~~v~v--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~ 279 (442)
.|+.++ .+|.+.| ||+.+++......+...+....|+|+|..+++++..+|...||++... .....+ .+.. ..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~ 337 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YS 337 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CC
Confidence 888765 5776555 566666655444466678899999998555666667788888876532 222222 3333 45
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC--CCc
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST--PPF 357 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~--~~~ 357 (442)
..|+|||++|+..+. + .+.+||+.++...... .. .......|+|++++++.++.++.+.+|.+. .+.
T Consensus 338 ~~~SpDG~~ia~~~~-------~-~i~~~Dl~~g~~~~lt-~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 338 AQISADGKTLVMING-------D-NVVKQDLTSGSTEVLS-ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred ccCCCCCCEEEEEcC-------C-CEEEEECCCCCeEEec-CC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 789999999988874 4 4666999877543211 11 123567899999999999888877776643 222
Q ss_pred ccccceeEeecccccCcEEEEEccC
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLD 382 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~ 382 (442)
.. ..+. .+.+.+...+|+|-
T Consensus 407 ~~---~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FK---ARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred ce---EEcc--CCCCCCCCcccCCC
Confidence 22 2222 22345667888874
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.9e-17 Score=138.79 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=187.8
Q ss_pred eeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC------CcEEEeee--CCcceEEEEEccCCCCEEEEeeCC
Q 013475 182 LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK------GIETQSFR--EELAVRVVKFHPENSNLFLSGGSK 253 (442)
Q Consensus 182 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~------~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d 253 (442)
+.+.+.+|.+.|++|.|+.++++|++|+.|..+++|+++. .+.+.... |...|.|++|...+ ..+++|+.+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCc
Confidence 3445667999999999999999999999999999999864 24555554 56899999999864 889999999
Q ss_pred CcEEEEECCCCceEEEecc--CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-cccee-eccccceeee
Q 013475 254 GLLRLWDIRTGKVAHEYIQ--SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQ-VYVEAYTCPC 329 (442)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~ 329 (442)
++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+. ++.|.+||++... ..... ..........
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-------~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-------AKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEec-------CceEEEEeccCCCCCCceeeecCCCcccee
Confidence 9999999999888777643 3458999999999999999998 9999999998765 22222 2233445677
Q ss_pred EEecCCCCe-eEEEeCCCeEEEeeCCCCcccc-cceeEeeccc-ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceee
Q 013475 330 VRHHPFDPY-FVAQSNGNYIAIFSSTPPFRLD-KFKRYESHGV-SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE 406 (442)
Q Consensus 330 ~~~~~~~~~-l~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~-~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~ 406 (442)
+.|+|.... |++.+..+-+-+||.+...... ....+.+... ...-..+.|+|+|+.|++--....-.+||+.+..+.
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 889997764 5567788899999988654421 1111111111 112346789999999998877777778898875553
Q ss_pred Eeeecc-------CCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 407 RKIKAY-------EQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 407 ~~~~~~-------~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
..-..| ...+.+++|..+. -+++|+++-.|+||.
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWK 320 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEe
Confidence 322222 2356788898885 699999999999993
No 209
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.8e-16 Score=122.50 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=150.4
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc----ceee--eeccCC-----CceeEEEeCCCCCE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ----KLAR--VLNFHS-----AAVNDVKWSQQGLF 204 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~--~~~~h~-----~~v~~l~~~~~~~~ 204 (442)
..+...++|.++|+.++|..+ +|++|+ ||.|+=|....... +... ....|. -.|++|...|..+.
T Consensus 53 ~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS 128 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS 128 (325)
T ss_pred cceeeccccCCCeeeeeeehh---heeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc
Confidence 445566999999999999944 677776 69999998753321 1111 111222 36889999997777
Q ss_pred EEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC---------C
Q 013475 205 VLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS---------L 274 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~ 274 (442)
+++++.|+.++-||+++|+..+.++ |...+.++.--... ..+++|++||++++||+++++.+..+... .
T Consensus 129 i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 7778889999999999999999999 89999999885443 67899999999999999999988776432 1
Q ss_pred -CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeC
Q 013475 275 -GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 275 -~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~ 353 (442)
..|.+++ -+..++++|+ ...+.+|.++..+....+... ..+..+.|. ...+++++..+.+.-|.+
T Consensus 208 g~wigala--~~edWlvCGg--------Gp~lslwhLrsse~t~vfpip--a~v~~v~F~--~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 208 GKWIGALA--VNEDWLVCGG--------GPKLSLWHLRSSESTCVFPIP--ARVHLVDFV--DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEEEe--ccCceEEecC--------CCceeEEeccCCCceEEEecc--cceeEeeee--cceEEEeccccceeeeee
Confidence 2344444 4677899888 689999999998766554433 234444443 457788888999999988
Q ss_pred CCC
Q 013475 354 TPP 356 (442)
Q Consensus 354 ~~~ 356 (442)
...
T Consensus 274 ~Gv 276 (325)
T KOG0649|consen 274 NGV 276 (325)
T ss_pred ccE
Confidence 764
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=3.4e-16 Score=145.70 Aligned_cols=237 Identities=11% Similarity=0.117 Sum_probs=158.4
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCCC
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPENS 244 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (442)
..|.+||. . ......+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++........+......|+|||.
T Consensus 176 ~~L~~~D~--d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDA--D-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECC--C-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 35666665 2 22233344577889999999999999887753 459999999987665444556677899999986
Q ss_pred CEEEEeeCCCcEEEEE--CCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeC--CCCcccceee
Q 013475 245 NLFLSGGSKGLLRLWD--IRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDV--SREVPLSKQV 320 (442)
Q Consensus 245 ~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~~ 320 (442)
.++++.+.+|...||. +..+. ...+..+........|+|||+.|+..+. .++...+|.+ ..+. ...+.
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~------~~g~~~Iy~~~~~~g~-~~~lt 324 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD------RGGAPQIYRMPASGGA-AQRVT 324 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec------CCCCcEEEEEECCCCc-eEEEe
Confidence 6666777788756554 44443 4555555555677899999999887664 1455566654 4332 22222
Q ss_pred ccccceeeeEEecCCCCeeEEEeCCC---eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC---c
Q 013475 321 YVEAYTCPCVRHHPFDPYFVAQSNGN---YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG---S 394 (442)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~ 394 (442)
. .........|+|+|++++..+.++ .|++|++.++... .+... .......|+|||++|+..+.++ .
T Consensus 325 ~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~----~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~ 396 (427)
T PRK02889 325 F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT----ALTDT---TRDESPSFAPNGRYILYATQQGGRSV 396 (427)
T ss_pred c-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE----EccCC---CCccCceECCCCCEEEEEEecCCCEE
Confidence 1 222344678999999998866543 6999998776432 11111 1234679999999998776544 3
Q ss_pred EEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 395 IYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
+++.++ +++....+..+.+.+...+|+|-
T Consensus 397 l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 666666 46666667667778888899874
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.4e-16 Score=128.85 Aligned_cols=245 Identities=11% Similarity=0.167 Sum_probs=166.0
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec-cCCCceeEEEeCCC-CCEEEEEecCCcEEEEECCCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN-FHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~ 222 (442)
+-.+.-++|++. -..+|++..|-.|++|+-.. .....++ .....|+|++|-|. ++.|+.|+..| |.+|..+..
T Consensus 98 ~~dlr~~aWhqH-~~~fava~nddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRT 172 (445)
T ss_pred hcceeeEeechh-hhhhhhhccCcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcc
Confidence 346778999997 67788999999999999643 3333333 24578999999994 56677777555 999986532
Q ss_pred ----c--------EEEeee--CCcceEEEEEccCCCCEEEEee-CCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475 223 ----I--------ETQSFR--EELAVRVVKFHPENSNLFLSGG-SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 223 ----~--------~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
. ..+.++ ....|++++|++|| ..+++++ .|..|.|||..++..+.......+.++-+.|||||.
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 1 122233 45689999999997 5555554 567899999999877655545567889999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-CeEEEeeCCCCcccc------
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-NYIAIFSSTPPFRLD------ 360 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~i~i~~~~~~~~~~------ 360 (442)
+|+.+.- |+..++|+.....-......... .+....|+|+|.+|+..... ..++-..........
T Consensus 252 ~lfaAt~-------davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 252 VLFAATC-------DAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred EEEEecc-------cceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence 9999998 99999997655433333333333 89999999999988775443 333332222111000
Q ss_pred -------cceeE---ee-cccccCcEEEEEccCCCEEEEecCCC--------cEEEEecCCc
Q 013475 361 -------KFKRY---ES-HGVSGFPIKCSFSLDGEKLVSGSSDG--------SIYFYNCRSS 403 (442)
Q Consensus 361 -------~~~~~---~~-~~~~~~v~~~~~s~~g~~l~~g~~dg--------~i~iwd~~~~ 403 (442)
.+... .+ ....+.+.+++|.|.|.||++.-..+ .|.+||.+..
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 00000 00 01134567899999999999865433 3677877653
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=6.2e-15 Score=121.69 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=167.5
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCC--ceeEEEeCCCCCEEEE-EecC------CcEEEEE
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSA--AVNDVKWSQQGLFVLS-CGYD------CSSRLVD 218 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s-~~~d------~~v~vwd 218 (442)
...++|+.| ...++.|.. .-.+||+.+- .+.......+.+ .+..|-| ..++|+- |+.+ +.|.|||
T Consensus 8 ~lsvs~NQD-~ScFava~~-~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATD-TGFRIYNCDP--FKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccC-CceEEEEec-CceEEEecCc--hhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 445999999 777877765 4689999843 222122221222 2333333 3334443 3332 5799999
Q ss_pred CCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-CCceEEEeccCC--CCEeEEEEeeCCCEEEeccCC
Q 013475 219 VEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKVAHEYIQSL--GPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~ 295 (442)
=...+++.++....+|.++.+.++ . |++.- .+.|++|... +-+.++.+.... ....+++-..+..+|+.-+.
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~--r-iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~- 156 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRD--R-IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF- 156 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCC--e-EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC-
Confidence 888899999999999999999875 3 44433 5689999987 445555554322 33444443334455555444
Q ss_pred CCCcCCCCeEEEEeCCCCcc-cceeeccccceeeeEEecCCCCeeEEEeCCCe-EEEeeCCCCcccccceeEeecccccC
Q 013475 296 SGSNMSENSIVVWDVSREVP-LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY-IAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
.-|.|.|-|+...+. ...+...|...|.|++.+-+|..+++++..|+ |+|||..++..+.. ++.......
T Consensus 157 -----k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E---~RRG~d~A~ 228 (346)
T KOG2111|consen 157 -----KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE---LRRGVDRAD 228 (346)
T ss_pred -----ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee---eecCCchhe
Confidence 379999999987665 45667788899999999999999999998885 89999999987744 333344466
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
+.+++|||+..+|++.+..|+|+||.++.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 89999999999999999999999998865
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=7.1e-18 Score=139.38 Aligned_cols=226 Identities=11% Similarity=0.091 Sum_probs=164.8
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC
Q 013475 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274 (442)
Q Consensus 195 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (442)
-++|+|+|+++++++.- .+.|-|.++-+..+.|..-..|..+.|..+....|.....++.|.+|++...+-..++....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46799999999999855 78899999888877777677788899998865666677889999999999888888888888
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
.++.+++|+|||+.++..+.+ +-.|.+|.+.+.+.... ......+..++|+++|++.+..+.-.....+.+.
T Consensus 92 agls~~~WSPdgrhiL~tseF------~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEF------DLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred CcceeeeECCCcceEeeeecc------eeEEEEEEeccceeEEe--cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 999999999999777766652 89999999988654322 2233456889999999999988776444333333
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
.......++.+.... .-.+.+.|+|||+.|++ ||.--.-.+..+. -.-.+..++|+|.+ ++|+.|+.
T Consensus 164 ~c~~W~ll~~f~~dT--~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~-qflavGsy 230 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCN-QFLAVGSY 230 (447)
T ss_pred hhHHHHHHHhcCCCc--ccccCceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEecccc-ceEEeecc
Confidence 222222223333222 22568999999988775 4421111111111 13468889999988 89999999
Q ss_pred CCcEEEcC
Q 013475 435 NGDVSVYE 442 (442)
Q Consensus 435 dg~i~iwd 442 (442)
|+.+||-|
T Consensus 231 D~~lrvln 238 (447)
T KOG4497|consen 231 DQMLRVLN 238 (447)
T ss_pred chhhhhhc
Confidence 99998854
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=3.3e-16 Score=146.32 Aligned_cols=236 Identities=12% Similarity=0.155 Sum_probs=162.2
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCCC
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPENS 244 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (442)
..|.+||.... . ...+..+...+.+.+|+||++.|+..+.+ ..|++||+.+++........+...+..|+|+|.
T Consensus 184 ~~l~i~D~~g~--~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY--N-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC--C-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 46888987432 2 23344577789999999999999988743 469999999887655444455566889999986
Q ss_pred CEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC--eEEEEeCCCCcccceee
Q 013475 245 NLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN--SIVVWDVSREVPLSKQV 320 (442)
Q Consensus 245 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~ 320 (442)
.++++.+.+| .|++||+.+++. ..+..+.......+|+|||++|+..+. .++ .|.++|+.++... .+.
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd------~~g~~~iy~~dl~~g~~~-~lt 332 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD------RGGRPQIYRVAASGGSAE-RLT 332 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC------CCCCceEEEEECCCCCeE-Eee
Confidence 6666666665 599999988764 445555555577899999999887764 133 4666777665432 222
Q ss_pred ccccceeeeEEecCCCCeeEEEeCCC---eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC---Cc
Q 013475 321 YVEAYTCPCVRHHPFDPYFVAQSNGN---YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD---GS 394 (442)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~ 394 (442)
. .........|+|+|++++..+.++ .|.+|++.++... .+. +. .......|+|||++|+..+.+ +.
T Consensus 333 ~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~----~Lt-~~--~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 333 F-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR----TLT-PG--SLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred c-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----ECC-CC--CCCCCceECCCCCEEEEEEecCCceE
Confidence 2 223345689999999998865432 6999998765432 111 11 123457999999988876653 46
Q ss_pred EEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 395 IYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
|+++++. +.....+..+.+.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 8888875 445566666667788888887
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=2.9e-17 Score=135.33 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=159.0
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEc-ccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNV-WSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.+..++|+.|...|++|+|+|. .+.|++++.|..-+||.. ..+..+....+..++..++++.|+|.++.|++|+.-..
T Consensus 45 w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~ 123 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL 123 (361)
T ss_pred ceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE
Confidence 5778999999999999999999 888999999999999998 56666777777789999999999999999999999999
Q ss_pred EEEEECCCCcEEEe-----eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-----C-------------CceEEEe
Q 013475 214 SRLVDVEKGIETQS-----FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-----T-------------GKVAHEY 270 (442)
Q Consensus 214 v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~ 270 (442)
|.||-++...--.. ......|+++.|+|++ -++++|+.|+..++|..- . |+++.++
T Consensus 124 isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 124 ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred EEEEEEecccceehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 99999887654322 2257789999999985 899999999999998641 1 2233444
Q ss_pred ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC
Q 013475 271 IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
....+.|..+.|+++|..|+-.+. |..+.+-|.....+..........+..++.|-.+...+.+|..
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~H-------ds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGH-------DSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecC-------CCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 455678999999999999999998 9999999988765332222223356666776665554444433
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-17 Score=145.45 Aligned_cols=220 Identities=17% Similarity=0.304 Sum_probs=165.3
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCC-CCEEEEeeCCCcEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPEN-SNLFLSGGSKGLLR 257 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 257 (442)
.+...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||....+.+..+. |...|.++.|.|.. ..++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3445688999999999999999999999999999999999888888887 88999999999853 46788999999999
Q ss_pred EEECCC----------CceEEEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceee------
Q 013475 258 LWDIRT----------GKVAHEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV------ 320 (442)
Q Consensus 258 iwd~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------ 320 (442)
+||+.. ....+.+..|...|..|+-.|++ +.|.+++. ||+|+-||++.......-.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE-------DGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE-------DGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC-------CcceeeecccCCccCCccccccHHH
Confidence 999974 23456667888999999999988 88999998 9999999999843221111
Q ss_pred ---ccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCccc---------------ccceeEe-ecc------cccC-
Q 013475 321 ---YVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRL---------------DKFKRYE-SHG------VSGF- 373 (442)
Q Consensus 321 ---~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~---------------~~~~~~~-~~~------~~~~- 373 (442)
........++..+|... +|++|+.+-..++||.+..... ..+..+. +|. ....
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 11224567888999765 6777999999999994321110 0011111 010 0111
Q ss_pred --cEEEEEccCCCEEEEecCCCcEEEEecCCceeeE
Q 013475 374 --PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELER 407 (442)
Q Consensus 374 --v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~ 407 (442)
++-+.|+|+|.-|++.-..-.|+++|+..++...
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 4567899999887776666679999998776543
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.7e-16 Score=132.25 Aligned_cols=267 Identities=11% Similarity=0.138 Sum_probs=197.5
Q ss_pred cccceEEEEeeCCC-CCEEEEecCCCcEEEEEcccCCccee----eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 144 HTKAVNSINWSPTH-AHLLASAGMDQSICIWNVWSRDQKLA----RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 144 h~~~V~~~~~s~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
-...|..++|.-++ ...|...+.|..+..+.+........ .......+.|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 44678888888763 23444444677777777643321111 1334456677777664 33788888999999999
Q ss_pred CCCCc----EEEeeeCCcceEEEEEccCCCCEEEEeeCC--CcEEEEECCCCceEEEeccCC---------CCEeEEEEe
Q 013475 219 VEKGI----ETQSFREELAVRVVKFHPENSNLFLSGGSK--GLLRLWDIRTGKVAHEYIQSL---------GPILDVEFT 283 (442)
Q Consensus 219 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~ 283 (442)
.+.+. .+..+.....+..+.-++....++++|+.. ..+.+||++..+.+.+-+.-. -.++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 98543 444555667788888888777888889998 889999999886665543221 246788898
Q ss_pred eC--CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 284 IN--GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 284 ~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
+. ...|++++. -+.+++||.+.+.............+.++...|+++++++|...+.+..||.+.......
T Consensus 212 ~g~~~~~fat~T~-------~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 212 EGSPNYKFATITR-------YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred CCCCCceEEEEec-------ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 87 889999998 899999999987655555555677899999999999999999999999999998765532
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
.+. ...+.+.++..+|.+.+|++++-|..|+|+|+++.+++..... ...+++|-+.++
T Consensus 285 --~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 285 --GLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred --ccC--CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 122 3346689999999999999999999999999999777655442 455666666554
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.5e-15 Score=125.33 Aligned_cols=232 Identities=14% Similarity=0.137 Sum_probs=164.3
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCC------CcEEEEECC
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSK------GLLRLWDIR 262 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 262 (442)
...+++|+.|...+++|..+| .+||+.+--+.....+ ..-.+..+-|-.+ .+.++||.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEEEEecc
Confidence 345599999998888887666 9999988643322222 2223334444432 444555544 479999976
Q ss_pred CCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC-Ccccceeeccc-cceeeeEEecCCCCeeE
Q 013475 263 TGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVE-AYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 340 (442)
..+++.++... .+|.++.+.++ .+++.- ++.|.+|...+ .+.+..+.... .....++..+.+..+|+
T Consensus 84 k~~~i~el~f~-~~I~~V~l~r~--riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 84 KERCIIELSFN-SEIKAVKLRRD--RIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred cCcEEEEEEec-cceeeEEEcCC--eEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 67777776544 78999998754 566666 78999999984 44444333322 22344444444444555
Q ss_pred E-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCc-EEEEecCCceeeEeeecc--CCce
Q 013475 341 A-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGS-IYFYNCRSSELERKIKAY--EQAC 416 (442)
Q Consensus 341 ~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~--~~~v 416 (442)
. |..-|.|++-|+.....- .......|...|.+++.+.+|..+|+++..|+ |+|||..+|+++++++.- ...|
T Consensus 153 fPg~k~GqvQi~dL~~~~~~---~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPN---APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred cCCCccceEEEEEhhhcCcC---CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 5 667799999998865442 11223355677999999999999999999997 899999999999999743 4589
Q ss_pred eEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 417 IDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 417 ~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.+++|+|+. .+|+.+|+-|+|+|+
T Consensus 230 y~iaFSp~~-s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 230 YCIAFSPNS-SWLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEeCCCc-cEEEEEcCCCeEEEE
Confidence 999999998 799999999999987
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=131.66 Aligned_cols=274 Identities=12% Similarity=0.230 Sum_probs=186.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE-EEEecCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV-LSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~~~~~ 223 (442)
-+.|.-+.|..|....|.....|+.|.+|++... .-...+.....++..++|+|||+.| .+...|-.|.||.+.+.+
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 3678889999985555666678899999999554 4445566677899999999999555 455569999999999987
Q ss_pred EEEeeeCCcceEEEEEccCCCCEEEEeeCCCc---EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 224 ETQSFREELAVRVVKFHPENSNLFLSGGSKGL---LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
....-..+..+..++|+++| ++.+..+.... +.|.....-..++.+....-..+.+.|+|||..|++-....
T Consensus 126 ~~~~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L---- 200 (447)
T KOG4497|consen 126 GYLLPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL---- 200 (447)
T ss_pred eEEecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh----
Confidence 76655567778999999997 66665554322 22222222334556666666778999999998887765311
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc---------------------
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL--------------------- 359 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--------------------- 359 (442)
+-.|..|. ....+..+.|+|.++++++|+.|+.+++.+--+-..+
T Consensus 201 -eykv~aYe-------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~ 266 (447)
T KOG4497|consen 201 -EYKVYAYE-------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET 266 (447)
T ss_pred -hheeeeee-------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence 23333333 2335777999999999999999988887642110000
Q ss_pred ------------------------------------ccceeEee----cccccCcEEEEEccCCCEEEEecC--CCcEEE
Q 013475 360 ------------------------------------DKFKRYES----HGVSGFPIKCSFSLDGEKLVSGSS--DGSIYF 397 (442)
Q Consensus 360 ------------------------------------~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~--dg~i~i 397 (442)
..+..++. ......+--++|++|..|+++-.. -+.+.+
T Consensus 267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 00000000 001122445899999999998654 367999
Q ss_pred EecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 398 YNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 398 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
||+++.++...+. ...+|....|+|..+ .|+.+.....+++|
T Consensus 347 Wdlq~l~l~avLi-Qk~piraf~WdP~~p-rL~vctg~srLY~W 388 (447)
T KOG4497|consen 347 WDLQNLKLHAVLI-QKHPIRAFEWDPGRP-RLVVCTGKSRLYFW 388 (447)
T ss_pred Eechhhhhhhhhh-hccceeEEEeCCCCc-eEEEEcCCceEEEE
Confidence 9999877655443 467899999999986 55555555668887
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-15 Score=126.58 Aligned_cols=253 Identities=18% Similarity=0.294 Sum_probs=172.6
Q ss_pred cceeccc-ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc------------ceeeeeccCCCceeEEEeCCCC
Q 013475 136 RLSTALC-HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ------------KLARVLNFHSAAVNDVKWSQQG 202 (442)
Q Consensus 136 ~~~~~l~-~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~~~~~~ 202 (442)
++...|+ ..+..|+|++|-|.++.-|+.|+. +-|.||....... ..+....+| ..|++|.|.+||
T Consensus 130 t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC
Confidence 3334443 235789999999998888988886 5699998742211 111223345 789999999999
Q ss_pred CEEEEEec-CCcEEEEECCCCcEEEee-eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEE
Q 013475 203 LFVLSCGY-DCSSRLVDVEKGIETQSF-REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 203 ~~l~s~~~-d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 280 (442)
..+++++. |..|.|||.+++..+... ...+.++-+.|+||| .+|+++.-|+..++|+.....-........+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 99999987 678999999999877666 467889999999997 888888999999999765443333344455699999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc---------e-----------e---eccccceeeeEEecCCCC
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS---------K-----------Q---VYVEAYTCPCVRHHPFDP 337 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~---------~-----------~---~~~~~~~~~~~~~~~~~~ 337 (442)
+|+|+|..|+... .+.-++|.+....... . + ...-.....+++|.|.|.
T Consensus 287 cWspcGsfLLf~~--------sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe 358 (445)
T KOG2139|consen 287 CWSPCGSFLLFAC--------SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE 358 (445)
T ss_pred eecCCCCEEEEEE--------cCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC
Confidence 9999999988776 3555555543211000 0 0 001134678999999999
Q ss_pred eeEEEeCCC--------eEEEeeCCCCcccccceeEeecccccCcEEEEEcc---CCCEEEEecCCCcEEEEecC
Q 013475 338 YFVAQSNGN--------YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL---DGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 338 ~l~~~~~~~--------~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~g~~dg~i~iwd~~ 401 (442)
++++....+ .|.+||.+...... ..+.+.....+...++|+| +|.+|.++=+.|.+.-|++.
T Consensus 359 yLav~fKg~~~v~~~k~~i~~fdtr~sp~ve--ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 359 YLAVIFKGQSFVLLCKLHISRFDTRKSPPVE--LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEEEcCCchhhhhhhhhhhhcccccCceE--EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 999976654 35667665543321 1111222223345567766 56777777777877777653
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.5e-15 Score=140.58 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=163.1
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec---CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCC
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY---DCSSRLVDVEKGIETQSFREELAVRVVKFHPENS 244 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (442)
..|.+||... .....+..|...+.+.+|+|||+.|+..+. +..|++||+.+++........+.+....|+|+|.
T Consensus 182 ~~l~~~d~dg---~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG---ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC---CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC
Confidence 4788888633 233445557889999999999999988764 4689999999987655444666778899999986
Q ss_pred CEEEEeeCCCc--EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc
Q 013475 245 NLFLSGGSKGL--LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV 322 (442)
Q Consensus 245 ~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 322 (442)
.++++.+.++. |++||+.+++. ..+..+........|+|||+.|+..+... ....|.+||+..+.. ..+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~-~~lt~- 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNP-RRISF- 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCe-EEeec-
Confidence 66667766665 77889887654 44555656677899999999998776410 124688888876543 22222
Q ss_pred ccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC------C
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD------G 393 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g 393 (442)
....+....|+|+|+.++....+ ..|.+|+..+... ..+.. . ..+....|+|||++|+..+.+ .
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt~-~--~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----RILTS-G--FLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----EeccC-C--CCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 23345668899999999886543 3688888765432 11111 1 234578999999998765432 3
Q ss_pred cEEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 394 SIYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 394 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
.|+++|+..++. ..+. ..+.+...+|+|-
T Consensus 405 ~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 405 KLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred eEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 588888876544 4444 2455777888874
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.3e-15 Score=132.53 Aligned_cols=279 Identities=14% Similarity=0.118 Sum_probs=204.1
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
+|...-+.|..+||+..++|+|..--.|++||+.+-..+....+. ...|.-.-.+.|-..++.-..|.+|.+...-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD--ae~V~feiLsDD~SK~v~L~~DR~IefHak~G- 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD--AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG- 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc--ccceeEEEeccchhhheEeecCceeeehhhcC-
Confidence 477788999999995556788888999999999544333322222 23455555555655566666677776654322
Q ss_pred cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 223 IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
.-..++....-..++++.-...+ +.++....|+-++++.|+.+..+....+.++++..++...+|++|+. +
T Consensus 126 -~hy~~RIP~~GRDm~y~~~scDl-y~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-------~ 196 (703)
T KOG2321|consen 126 -RHYRTRIPKFGRDMKYHKPSCDL-YLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-------D 196 (703)
T ss_pred -eeeeeecCcCCccccccCCCccE-EEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc-------C
Confidence 12222333444567776554344 44444557999999999999999888899999999999999999998 9
Q ss_pred CeEEEEeCCCCcccceeecccc----------ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccccc
Q 013475 303 NSIVVWDVSREVPLSKQVYVEA----------YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSG 372 (442)
Q Consensus 303 ~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 372 (442)
|.|-+||.+....+..+..... ..++++.|..+|-.+++|+..|.+.|||++....+ ....|....
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl----~~kdh~~e~ 272 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL----LVKDHGYEL 272 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce----eecccCCcc
Confidence 9999999998776655443322 34899999999999999999999999999987654 234455667
Q ss_pred CcEEEEEccC--CCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 373 FPIKCSFSLD--GEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 373 ~v~~~~~s~~--g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.|..+.|.+. ++.|++.. ...++|||-.+|+....+.. ...++.+++-|++ -+++++-.++.+..
T Consensus 273 pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHT 339 (703)
T ss_pred ceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccc-cCCcCceeeecCC-ceEEEecCCCccee
Confidence 7888999774 45565544 56799999999999888875 4559999999998 48888877765543
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=3.2e-14 Score=128.38 Aligned_cols=262 Identities=15% Similarity=0.211 Sum_probs=167.4
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~ 213 (442)
.+.+..+......-..+.|++| |+++++++.||.|.++|+.+. +.+..++ -.....++++++||+++++++. ++.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~--~~v~~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATG--KVVATIK-VGGNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSS--SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred CeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcc--cEEEEEe-cCCCcceEEEcCCCCEEEEEecCCCc
Confidence 4566667655444445789999 899999999999999999554 6777777 4456788999999999998764 899
Q ss_pred EEEEECCCCcEEEeeeC--------CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE-EeccCCCCEeEEEEee
Q 013475 214 SRLVDVEKGIETQSFRE--------ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH-EYIQSLGPILDVEFTI 284 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~ 284 (442)
+.++|.++.+.++.+.. ...+..+..++....++++--+.+.|.+.|....+.+. .............|++
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 99999999999988762 23577888888753344555555889888977654332 2333345678899999
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc--------------c---------------------------
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV--------------E--------------------------- 323 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~--------------------------- 323 (442)
++++++.+.. .++.|.++|..+++.+..+... .
T Consensus 182 dgry~~va~~------~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 182 DGRYFLVAAN------GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp TSSEEEEEEG------GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred ccceeeeccc------ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 9999877543 1667888887765433211100 0
Q ss_pred ------------cceeeeEEecCCCCeeEEE----eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEE
Q 013475 324 ------------AYTCPCVRHHPFDPYFVAQ----SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLV 387 (442)
Q Consensus 324 ------------~~~~~~~~~~~~~~~l~~~----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 387 (442)
...-.-+..+|+++++.+. ...+.|.++|..+......+.. .....+..+.|+++|+++.
T Consensus 256 ~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~----~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP----GPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp TTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH----HHT--EEEEEE-TTSSEEE
T ss_pred hhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec----cCCCcEeccEECCCCCEEE
Confidence 0001234568999998887 4568999999988643322221 1112378899999999877
Q ss_pred EecC--CCcEEEEecCCceeeEeee
Q 013475 388 SGSS--DGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 388 ~g~~--dg~i~iwd~~~~~~~~~~~ 410 (442)
.+.. +|.|.|||..+.+.+.++.
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 6544 4469999999999988887
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=1.6e-13 Score=124.16 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=179.1
Q ss_pred EEEecCC----CcEEEEEcccCCcce--eeeeccCCCceeEEEeCCCCCEEEEEec----CCcEEEEECCCC--c--EEE
Q 013475 161 LASAGMD----QSICIWNVWSRDQKL--ARVLNFHSAAVNDVKWSQQGLFVLSCGY----DCSSRLVDVEKG--I--ETQ 226 (442)
Q Consensus 161 l~s~~~d----g~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d~~v~vwd~~~~--~--~~~ 226 (442)
++.|+.+ +.|.+|+++....++ +.... .......+++++++++|+++.. ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 789999985444433 33322 4456778999999999999987 468999988764 2 233
Q ss_pred eee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-CceEEE---ec----------cCCCCEeEEEEeeCCCEEEe
Q 013475 227 SFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKVAHE---YI----------QSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 227 ~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~ 291 (442)
... .......+++++++..++++...+|.|.++++.. +..... +. .......++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 333 4566778999999855555556789999999986 433222 11 12345789999999998887
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcc-c---ceeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCC-CcccccceeE
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVP-L---SKQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTP-PFRLDKFKRY 365 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~-~~~~~~~~~~ 365 (442)
... ....|.+|++..... + ..........-..+.|+|+++++.+ ...++.|.+|++.. ...+..+...
T Consensus 161 ~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 161 PDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp EET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred Eec------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 654 267899999987552 2 2233455567788999999998766 55678899998882 2222222222
Q ss_pred eec----ccccCcEEEEEccCCCEEEEec-CCCcEEEEecCC--c--eeeEeeeccCCceeEEEEcCCCCCEEEEee-CC
Q 013475 366 ESH----GVSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNCRS--S--ELERKIKAYEQACIDVAFHPILPNIIGSCS-WN 435 (442)
Q Consensus 366 ~~~----~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d 435 (442)
... ........+.++|||++|+++. ..+.|.+|+++. + +.+..+.........++++|+| ++|+++. .+
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s 313 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDS 313 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTT
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCC
Confidence 211 1112567899999999988765 567899999932 3 3444555445568999999999 5666554 66
Q ss_pred CcEEEcC
Q 013475 436 GDVSVYE 442 (442)
Q Consensus 436 g~i~iwd 442 (442)
+.|.+|+
T Consensus 314 ~~v~vf~ 320 (345)
T PF10282_consen 314 NTVSVFD 320 (345)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 7888773
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=5.2e-15 Score=142.20 Aligned_cols=252 Identities=14% Similarity=0.123 Sum_probs=176.4
Q ss_pred CCcceeeeeccCCCceeEEEeCCCC-CEEEEEecCCcEEEEECCCC-------cEEEeee-CCcceEEEEEccCCCCEEE
Q 013475 178 RDQKLARVLNFHSAAVNDVKWSQQG-LFVLSCGYDCSSRLVDVEKG-------IETQSFR-EELAVRVVKFHPENSNLFL 248 (442)
Q Consensus 178 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~l~ 248 (442)
..+.++..+..|...|..++.++.. .+|++|+.||+|++||...- +...++. ....+.++.+.+.+ +.++
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEE
Confidence 3467888888899999999998754 99999999999999998642 2333444 67789999999886 8889
Q ss_pred EeeCCCcEEEEECCCCc-------eEEEeccC-CCCEeEE-EEee-CCC-EEEeccCCCCCcCCCCeEEEEeCCCCcccc
Q 013475 249 SGGSKGLLRLWDIRTGK-------VAHEYIQS-LGPILDV-EFTI-NGK-QFVSSSDVSGSNMSENSIVVWDVSREVPLS 317 (442)
Q Consensus 249 ~~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~i~~~-~~~~-~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 317 (442)
+++.||.|++.++.-.+ ..+....+ .+.+.++ +|.. .+. .++.+.. .+.|..||++......
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~-------~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD-------LSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe-------ccceEEecchhhhhHH
Confidence 99999999999987521 11222222 2333333 3322 233 6777776 8999999999877666
Q ss_pred eeecc-ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc---CCCEEEEec--C
Q 013475 318 KQVYV-EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL---DGEKLVSGS--S 391 (442)
Q Consensus 318 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~g~--~ 391 (442)
..... ..+.+++++.+|.+.+++.|+..|.+.+||++=...+..+. +.+...+..+..+| .....++++ .
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE----HPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc----CcccCCcceEEeeccCCCCceEEEecccC
Confidence 55443 44679999999999999999999999999998655443222 23334566666555 334555444 5
Q ss_pred CCcEEEEecCCceeeEeeeccCC-------------------ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 392 DGSIYFYNCRSSELERKIKAYEQ-------------------ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 392 dg~i~iwd~~~~~~~~~~~~~~~-------------------~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+.|.+|++.+|.+-..+....+ ......+...+ .++.+|+.|+.|+.||
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeecc
Confidence 78899999999876665543200 11112222222 5899999999999998
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=8.9e-15 Score=136.08 Aligned_cols=236 Identities=15% Similarity=0.131 Sum_probs=154.5
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCCEEEEec---CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAG---MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
.......+...+.+..+...+.+.+|||| |+.|+..+ .+..|.+|++.+++...+..+.+ .+..+.|+|||+.
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG~~ 256 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSK 256 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCCCE
Confidence 44444456666667677788999999999 77776543 34579999986654344433443 3457899999998
Q ss_pred EEEE-ecCC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc--EEEEECCCCceEEEeccCCCCEeE
Q 013475 205 VLSC-GYDC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL--LRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 205 l~s~-~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
|+.. +.+| .|++||+++++..+...+...+....|+|+|..++++...++. |+++|+.+++. ..+.........
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~ 335 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 335 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccC
Confidence 8865 3344 5899999988776665566678889999998444444444444 55557766544 334334445667
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCe---EEEeeCCCC
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY---IAIFSSTPP 356 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---i~i~~~~~~ 356 (442)
..|+|||++|+..+... ....|.+||+.++... .+. .........|+|+|++++..+.++. +.+++++..
T Consensus 336 ~~~SpDG~~Ia~~~~~~----g~~~I~~~dl~~g~~~-~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQ-VLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEECCCCCEEEEEEccC----CCceEEEEECCCCCeE-EeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 89999999998765410 1346889999876532 222 1123446789999999999887653 677777554
Q ss_pred cccccceeEeecccccCcEEEEEcc
Q 013475 357 FRLDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 357 ~~~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
.. ..+.. +.+.+...+|+|
T Consensus 409 ~~----~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 409 FK----ARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred Ce----EECcc--CCCCcCCcccCC
Confidence 32 11222 234466677776
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1e-14 Score=136.32 Aligned_cols=217 Identities=12% Similarity=0.101 Sum_probs=144.6
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCCEEEEecC---CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGM---DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
+..+...+...+.+..|...+.+.+|+|| |+.|+..+. +..|.+||+.++....+. .+.+...+++|+|||+.
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCE
Confidence 33444556666777788889999999999 777777653 346999999655333332 23445568899999987
Q ss_pred EEE-EecCC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc--EEEEECCCCceEEEeccCCCCEeE
Q 013475 205 VLS-CGYDC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL--LRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 205 l~s-~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
|+. .+.+| .|++||+.+++......+.......+|+|+|..++++...+|. |+++|+.+++.. .+..+......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~ 340 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNAR 340 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 764 45555 5999999988765544455556778999997444445444554 777777666543 33223334557
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCC
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPP 356 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~ 356 (442)
.+|+|+|++|+..+.. .....|.+||+.++... .+. +........|+|+|++++..+.+ ..|++++..+.
T Consensus 341 ~~~SpDG~~Ia~~~~~----~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 341 ASVSPDGKKIAMVHGS----GGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCCEEEEEECC----CCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8999999999876540 01236999999876543 222 22234567899999988876653 46777777653
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=8.2e-17 Score=139.01 Aligned_cols=234 Identities=16% Similarity=0.227 Sum_probs=185.7
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
..|.++.|-.+ .+++|.+- .+.+.||| ..+..++.++.| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+
T Consensus 171 Etv~Dv~~LHn-eq~~AVAQ-K~y~yvYD---~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 171 ETVRDVTFLHN-EQFFAVAQ-KKYVYVYD---NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV 244 (545)
T ss_pred hhhhhhhhhcc-hHHHHhhh-hceEEEec---CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhh
Confidence 45677777776 77777765 57899999 556777888744 68999999999999999999999999999999999
Q ss_pred Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 226 QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 226 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
..+. ..+.+..++-+|-+ .++-+|..+|+|.+|.....+++..+..|.++|.+|++.++|.|+++++. |..
T Consensus 245 a~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-------Dr~ 316 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-------DRK 316 (545)
T ss_pred HHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-------ccc
Confidence 9888 67788889999985 78889999999999999999999999999999999999999999999998 999
Q ss_pred EEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC
Q 013475 305 IVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE 384 (442)
Q Consensus 305 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 384 (442)
++|||+++...+..... ......++++. +-+++.+.+..+.+|.-.....-.....+..|...+.|..+.|.|-..
T Consensus 317 ~kIWDlR~~~ql~t~~t--p~~a~~ls~Sq--kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRT--PHPASNLSLSQ--KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred eeEeeeccccccceeec--CCCcccccccc--ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 99999999876655544 33444555554 456777888899999643321111223344455566788999999877
Q ss_pred EEEEecCCCcEEE
Q 013475 385 KLVSGSSDGSIYF 397 (442)
Q Consensus 385 ~l~~g~~dg~i~i 397 (442)
.|-+|...|.-.|
T Consensus 393 vLGIGH~~G~tsi 405 (545)
T KOG1272|consen 393 VLGIGHAGGITSI 405 (545)
T ss_pred eeeccccCCceeE
Confidence 7777766664444
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=1.1e-12 Score=118.82 Aligned_cols=268 Identities=14% Similarity=0.193 Sum_probs=174.2
Q ss_pred ccceEEEEeeCCCCCEEEEecC----CCcEEEEEcccC--CcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEE
Q 013475 145 TKAVNSINWSPTHAHLLASAGM----DQSICIWNVWSR--DQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLV 217 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vw 217 (442)
...-..++++|+ +++|++... ++.|..|++... ....+............+++++++++|+++.. +|.|.++
T Consensus 36 ~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 345567889999 788887765 579999998764 22334444434456678999999999999886 8999999
Q ss_pred ECCC-CcEEEe---ee-----------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc--eE--EEec-cCCCCE
Q 013475 218 DVEK-GIETQS---FR-----------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK--VA--HEYI-QSLGPI 277 (442)
Q Consensus 218 d~~~-~~~~~~---~~-----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~--~~~~-~~~~~i 277 (442)
++.. +..... +. ......++.|+|++..++++.-....|++|++.... .. ..+. .....-
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9987 333222 21 234578999999975455554445689999997654 31 2222 233467
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC--CCc--ccceeecc-----ccceeeeEEecCCCCeeEEEe-CCCe
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS--REV--PLSKQVYV-----EAYTCPCVRHHPFDPYFVAQS-NGNY 347 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~-~~~~ 347 (442)
+.+.|+|+++++.+... .++.|.+|++. .+. .+...... .......+.++|++++|.++. ..+.
T Consensus 195 Rh~~f~pdg~~~Yv~~e------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNE------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEEEE-TTSSEEEEEET------TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred cEEEEcCCcCEEEEecC------CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 89999999998877765 38999999998 322 11111111 112567899999999988865 5678
Q ss_pred EEEeeCCCC-cccccceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEEEec--CCceeeEeee-ccCCceeEEEE
Q 013475 348 IAIFSSTPP-FRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNC--RSSELERKIK-AYEQACIDVAF 421 (442)
Q Consensus 348 i~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~ 421 (442)
|.+|+++.. ..+..+..... ....+..++++|+|++|+++. .++.|.+|++ ++|.+...-. ..-....||.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999999432 33333333322 234578999999999999876 5678999976 4666544332 12345666665
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=133.63 Aligned_cols=139 Identities=17% Similarity=0.283 Sum_probs=116.7
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC--------------Cc------------ceeeeeccCCCceeEEEe
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR--------------DQ------------KLARVLNFHSAAVNDVKW 198 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~--------------~~------------~~~~~~~~h~~~v~~l~~ 198 (442)
+..|+|+.|-|.+...++.+-.+|.+.+||.+.. .. .++..+..-.+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3789999999986677777888999999976211 00 111122223457899999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE
Q 013475 199 SQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI 277 (442)
Q Consensus 199 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 277 (442)
++||++||+.+.||.++|+|..+.+.+..++ .-+...|++|+||| ++|++|++|..|.||.+...+.+..-.+|.+.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccce
Confidence 9999999999999999999999998888777 67889999999997 999999999999999999999999999999999
Q ss_pred eEEEEee
Q 013475 278 LDVEFTI 284 (442)
Q Consensus 278 ~~~~~~~ 284 (442)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999983
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=6.6e-14 Score=131.09 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=148.3
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCCEEEEecC---CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGM---DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
.......+...+.+..|...+.+.+|+|| |+.|+..+. +..|.+||+.++... .+..+.+.+...+|+|||+.
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCCCE
Confidence 34445566677778889999999999999 777776643 468999999655332 33345667788999999988
Q ss_pred EE-EEecCCc--EEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeE
Q 013475 205 VL-SCGYDCS--SRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 205 l~-s~~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
|+ +.+.++. |++||+.+++......+........|+|+|..++++...+| .|+++|+..++. ..+..+...+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~ 338 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYST 338 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccC
Confidence 76 4455554 77889988876554445666778999999844444443444 688889876554 344434456677
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC------CeEEEeeC
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG------NYIAIFSS 353 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~i~i~~~ 353 (442)
..|+|+|++|+...... .+..|.+||+..+.. ..+. ....+....|+|+|+.++..+.+ ..++++++
T Consensus 339 ~~~SpdG~~ia~~~~~~----~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGG----GQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred eEECCCCCEEEEEEcCC----CceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 89999999998766410 124788889865432 2221 22346778999999988775442 36778887
Q ss_pred CCC
Q 013475 354 TPP 356 (442)
Q Consensus 354 ~~~ 356 (442)
.+.
T Consensus 412 ~g~ 414 (435)
T PRK05137 412 TGR 414 (435)
T ss_pred CCC
Confidence 654
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.5e-13 Score=128.48 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=154.4
Q ss_pred cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCC
Q 013475 169 SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPENSN 245 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (442)
.|.++|.... .. +.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++...............|+|+|..
T Consensus 199 ~l~i~d~dG~--~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGY--NE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCC--Cc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 5666676333 22 2334467788999999999999877653 3588999988876444333444557899999866
Q ss_pred EEEEeeCCCc--EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 246 LFLSGGSKGL--LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 246 ~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
++++...+|. |+++|+.+++. ..+..+........|+|||++|+..+... ....|.++|+.+++.. .+.. .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~-~Lt~-~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVS-RLTF-E 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEE-EEec-C
Confidence 6666677775 88889887654 44444555667889999999888766410 1245777787766532 2221 2
Q ss_pred cceeeeEEecCCCCeeEEEeCC-C--eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC-C--cEEE
Q 013475 324 AYTCPCVRHHPFDPYFVAQSNG-N--YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD-G--SIYF 397 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g--~i~i 397 (442)
........|+|+|++++..+.+ + .|.++|+.++... .+... .......|+|||++|+..+.+ | .+++
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~----~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ----VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE----EccCC---CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 2223457899999998876543 3 4666777665321 11111 111245899999988765543 3 3777
Q ss_pred EecCCceeeEeeeccCCceeEEEEcCC
Q 013475 398 YNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 398 wd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
++. ++.....+..+.+.+...+|+|-
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCCC
Confidence 786 46666777666677888889873
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-13 Score=121.46 Aligned_cols=277 Identities=13% Similarity=0.145 Sum_probs=179.8
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE-----ec-----CCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC-----GY-----DCSSR 215 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~~-----d~~v~ 215 (442)
..++..++|++ |+++|.+. ++.++|++..... .+.+.. ...++++.|+|-+++|.+= .. .-.++
T Consensus 35 ~~~~v~~~S~~-G~lfA~~~-~~~v~i~~~~~~~--~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNN-GRLFAYSD-NQVVKVFEIATLK--VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCC-CcEEEEEc-CCeEEEEEccCCc--EEEEec--cceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 44677888988 98887765 5799999985543 333333 2388999999999988862 11 23577
Q ss_pred EEECCCCcEEEeeeC-CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 216 LVDVEKGIETQSFRE-ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 216 vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
+|+++++.....+.. ...-++..|+.|+ . +++--..+.+++|++.+.+.+. -+.|...|+.+.++|.+..-..+..
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccch-h-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEE
Confidence 999999766666652 2222789999985 3 3333335679999987643221 1224456667777665322111111
Q ss_pred CCCCcCCCCeEEEEeCCCC-------------------------------------------------------ccccee
Q 013475 295 VSGSNMSENSIVVWDVSRE-------------------------------------------------------VPLSKQ 319 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~-------------------------------------------------------~~~~~~ 319 (442)
..+..+.-..|+||.+... ..-...
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 1122222334444433210 001112
Q ss_pred eccccceeeeEEecCCCCeeEE--EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC---CCc
Q 013475 320 VYVEAYTCPCVRHHPFDPYFVA--QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS---DGS 394 (442)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~ 394 (442)
.....++|.++.|+++++.+++ |..-..+.|||++..... . -..+.-.++-|+|.|++|+.++- .|.
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~------d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF------D--FPEGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE------e--CCCCCccceEECCCCCEEEEeecCCCCCc
Confidence 2234568999999999987766 677889999999875332 1 11244567899999999987664 578
Q ss_pred EEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee------CCCcEEEcC
Q 013475 395 IYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS------WNGDVSVYE 442 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~------~dg~i~iwd 442 (442)
|-|||+.+.+++..+..- .-+-+.|+||| .+|+|+. -|+.++||+
T Consensus 338 mEvwDv~n~K~i~~~~a~--~tt~~eW~PdG-e~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAA--NTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eEEEeccchhhccccccC--CceEEEEcCCC-cEEEEEeccccEEecCCeEEEE
Confidence 999999999998888763 34567899999 6887776 368889985
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=6e-14 Score=130.73 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=137.3
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCCEEEEecCC---CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMD---QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
.......+...+.+..+...+.+.+|+|| |+.|+..+.+ ..|.+||+.++....+ ....+.+...+|+|||+.
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCE
Confidence 34444556666677788899999999999 7777766532 3599999966533322 223345678999999988
Q ss_pred EEE-EecCCcEEEEE--CCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEEC--CCCceEEEeccCCCCEeE
Q 013475 205 VLS-CGYDCSSRLVD--VEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDI--RTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 205 l~s-~~~d~~v~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~ 279 (442)
|+. .+.++...||. +..+.......+........|+|||..+++++..+|...+|.+ .+++. ..+.........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~ 332 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTS 332 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCc
Confidence 874 56677766664 5555433332344556778999998555555544566666654 44433 222222233456
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC---eEEEeeCCC
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN---YIAIFSSTP 355 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~i~i~~~~~ 355 (442)
..|+|||++|+..+... .+..|.+||+.++... .+.. ........|+|+++.++..+.++ .+.+.+...
T Consensus 333 ~~~SpDG~~Ia~~s~~~----g~~~I~v~d~~~g~~~-~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 333 PRISPDGKLLAYISRVG----GAFKLYVQDLATGQVT-ALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred eEECCCCCEEEEEEccC----CcEEEEEEECCCCCeE-EccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 78999999998776510 0236999999876533 2221 12346789999999988866543 355555543
No 235
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=115.82 Aligned_cols=245 Identities=16% Similarity=0.211 Sum_probs=163.6
Q ss_pred ceeccc-ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-----CCC----EEE
Q 013475 137 LSTALC-HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-----QGL----FVL 206 (442)
Q Consensus 137 ~~~~l~-~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~----~l~ 206 (442)
....++ .|...|+.+.--|+ + .|.+-+.|+.+.+|++.......+ |.-.++++-|.+ +++ .++
T Consensus 47 ~~~~~r~~g~~~it~lq~~p~-d-~l~tqgRd~~L~lw~ia~s~~i~i-----~Si~~nslgFCrfSl~~~~k~~eqll~ 119 (323)
T KOG0322|consen 47 DLPLIRLFGRLFITNLQSIPN-D-SLDTQGRDPLLILWTIAYSAFISI-----HSIVVNSLGFCRFSLVKKPKNSEQLLE 119 (323)
T ss_pred cchhhhhhccceeeceeecCC-c-chhhcCCCceEEEEEccCcceEEE-----eeeeccccccccceeccCCCcchhhee
Confidence 344455 57788999999887 4 477889999999999944322222 333344444433 111 111
Q ss_pred EEecCC-cEEEEECCCCcEEEeee-----CCcceEEEEEccCC--CCEEEEeeCCCcEEEEECCCCce----------EE
Q 013475 207 SCGYDC-SSRLVDVEKGIETQSFR-----EELAVRVVKFHPEN--SNLFLSGGSKGLLRLWDIRTGKV----------AH 268 (442)
Q Consensus 207 s~~~d~-~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----------~~ 268 (442)
.-+... .+.+-|......++... ..+.+.|..+..+. ..++++|.++|.|.+||+.++.. +.
T Consensus 120 yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 120 YPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred cCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 111100 01222222211222211 34556666643322 34567888999999999998733 33
Q ss_pred EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc---ccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 269 EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV---PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
....|..+|.++.|.+.-..=++++. +..+..|++.... .+........-.+..+.+-||++.+++++.|
T Consensus 200 ~~ash~qpvlsldyas~~~rGisgga-------~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD 272 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSCDRGISGGA-------DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWD 272 (323)
T ss_pred chhhccCcceeeeechhhcCCcCCCc-------cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccC
Confidence 44568889999999876666667776 8899999987642 2223333445578889999999999999999
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
+.|++|+.++...+.. +..|. ..|.+++|+|+-.++|.++.|+.|.+|++
T Consensus 273 ~RiRVyswrtl~pLAV---LkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 273 HRIRVYSWRTLNPLAV---LKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEEEEeccCCchhh---hhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999998776643 33333 67999999999999999999999999986
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=4.9e-14 Score=115.58 Aligned_cols=156 Identities=18% Similarity=0.378 Sum_probs=111.3
Q ss_pred EEEEeeCCCCCEEEEecC----------CCcEEEEEcccCCcceeeeec-cCCCceeEEEeCCCCCEEEEEe--cCCcEE
Q 013475 149 NSINWSPTHAHLLASAGM----------DQSICIWNVWSRDQKLARVLN-FHSAAVNDVKWSQQGLFVLSCG--YDCSSR 215 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~--~d~~v~ 215 (442)
..+.|+++ |++|+.-.. -|...||.++..+.. ...+. ...+.|.+++|+|+++.|+++. .++.|.
T Consensus 9 ~~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999 665544322 234666766444322 33332 2455799999999999876553 577999
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC---CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS---KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (442)
+||++ ++.+..+. ...++.+.|+|+| ++|++++. .|.|.+||.++.+.+.+... ..++.++|+|+|++|+++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEE
Confidence 99996 66666664 5677899999997 67777654 46799999998888776643 357899999999999998
Q ss_pred cCCCCCcCCCCeEEEEeCCC
Q 013475 293 SDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~ 312 (442)
.... ....|+.++||++..
T Consensus 162 ~t~~-r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 162 TTSP-RLRVDNGFKIWSFQG 180 (194)
T ss_pred Eecc-ceeccccEEEEEecC
Confidence 7521 222489999999864
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=7.2e-14 Score=116.65 Aligned_cols=275 Identities=12% Similarity=0.180 Sum_probs=180.5
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---cceeeeeccC------------CCceeEEEeCCCC--CEEE
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---QKLARVLNFH------------SAAVNDVKWSQQG--LFVL 206 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h------------~~~v~~l~~~~~~--~~l~ 206 (442)
..+-|.++.|..+ |.+||+|..+|.|.++.-.... ......++.| ...|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3467899999999 9999999999999999753221 1233344444 3568899999854 4566
Q ss_pred EEecCCcEEEEECCCCcEEEe---ee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCCEeE
Q 013475 207 SCGYDCSSRLVDVEKGIETQS---FR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGPILD 279 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~~~~~~---~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~ 279 (442)
..+.|.+|++|.+........ +. ....++.+.. .+.+..|-.+. ..+.+.+ ..|.-.|++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-------p~~~~~~~~ve------a~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-------PVEGRHDLEVE------ASPRRVYANAHTYHINS 169 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeec-------eeeccccceee------eeeeeeccccceeEeee
Confidence 677899999999876433220 11 1111222211 11111111110 0122222 357778999
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-------cceeeeEEecCCC-CeeEEEeCCCeEEEe
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-------AYTCPCVRHHPFD-PYFVAQSNGNYIAIF 351 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~l~~~~~~~~i~i~ 351 (442)
+.++.|+..++++. |=.|.+|++.-......+.... ..-|++..|+|.. ..++..+..|.|++.
T Consensus 170 IS~NsD~Et~lSAD--------dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD--------DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeecCccceEeecc--------ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 99999999999988 8899999987644333332211 2347788899965 566668899999999
Q ss_pred eCCCCccccccee-Eeec----------ccccCcEEEEEccCCCEEEEecCCCcEEEEecC-CceeeEeeeccCC-----
Q 013475 352 SSTPPFRLDKFKR-YESH----------GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR-SSELERKIKAYEQ----- 414 (442)
Q Consensus 352 ~~~~~~~~~~~~~-~~~~----------~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~----- 414 (442)
|++.......... +... ..-..|..+.|+.+|+||++-+. -+|++||+. ..+++.+++-|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 9985433321111 1111 11234678999999999999765 579999994 4567777776642
Q ss_pred -------ce---eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 415 -------AC---IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 415 -------~v---~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.| ..++|+.++ .+++||+....+++++
T Consensus 321 c~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHhhccchhheeEEEEcCCc-ceEecccccceEEEec
Confidence 22 357899998 7999999999999885
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.2e-13 Score=126.74 Aligned_cols=238 Identities=11% Similarity=0.085 Sum_probs=156.8
Q ss_pred cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCC
Q 013475 169 SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPENSN 245 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (442)
.|.++|.+.. .. ..+..+...+....|+|||+.|+..+.+ ..|.+||+.+++........+.+....|+|+|..
T Consensus 180 ~l~~~d~~g~--~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGA--RA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCC--Cc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 4666776432 33 3344467789999999999999887654 3699999998876554444555667999999855
Q ss_pred EEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 246 LFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 246 ~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
++++...+| .|++||+.+++. ..+..+........|+|||+.++..+... ....|.++|+.+++.. .+.. .
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~-~lt~-~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAE-RVTF-V 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEE-Eeec-C
Confidence 555665555 588889987764 34555555567789999999887766410 1246777888766532 2221 1
Q ss_pred cceeeeEEecCCCCeeEEEeCC-C--eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC---CcEEE
Q 013475 324 AYTCPCVRHHPFDPYFVAQSNG-N--YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD---GSIYF 397 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~i 397 (442)
........|+|+++.++..... + .|.++|+.++... .+... .......|+|||++|+..+.+ ..|++
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~----~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR----ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE----EccCC---CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 2233457899999998886643 2 5888888765421 11111 112245899999999876543 34777
Q ss_pred EecCCceeeEeeeccCCceeEEEEcCC
Q 013475 398 YNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 398 wd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
+++. +.....+..+.+.+...+|+|-
T Consensus 403 ~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECC-CCceEECcCCCCCcCCCccCCC
Confidence 7875 4444556555667788888874
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.62 E-value=3.3e-13 Score=126.57 Aligned_cols=237 Identities=12% Similarity=0.131 Sum_probs=156.4
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCCC
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPENS 244 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (442)
..|.++|.... . ...+..+...+...+|+|||++|+.+..+ ..|++||+.+++..........+.+++|+|+|.
T Consensus 170 ~~l~~~d~~g~--~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGA--N-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCC--C-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 35777776322 2 23344466778999999999999987754 479999999987665555666677899999985
Q ss_pred CEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc
Q 013475 245 NLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV 322 (442)
Q Consensus 245 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 322 (442)
.++++.+.++ .|++||+.+++. ..+..+........|+++|++|+..+... ....|.++|+.+++.. .+. .
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g~~~iy~~d~~~~~~~-~l~-~ 319 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRG----GSPQIYMMDADGGEVR-RLT-F 319 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCC----CCceEEEEECCCCCEE-Eee-c
Confidence 5656665554 589999987654 34444444556779999999887765410 0236888888765432 222 2
Q ss_pred ccceeeeEEecCCCCeeEEEeCCC---eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC---cEE
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSNGN---YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG---SIY 396 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~ 396 (442)
.........|+|++++++.+..++ .|.+|++.+... ..+... .......|+|+|++|+..+.++ .++
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTDT---GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccCC---CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 334556789999999999887765 788999876432 111111 1233568999999998876654 355
Q ss_pred EEecCCceeeEeeeccCCceeEEEEc
Q 013475 397 FYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 397 iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
+.+.. ++....+..+.+.+..+.|+
T Consensus 393 ~~~~~-g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 393 LVSTD-GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred EEECC-CceeeECCCCCCCcCCCCCC
Confidence 55643 44455555445555555553
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=9.6e-15 Score=127.17 Aligned_cols=254 Identities=20% Similarity=0.295 Sum_probs=190.5
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCC-CCEEEEeeCCCcEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPEN-SNLFLSGGSKGLLR 257 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 257 (442)
.+...+..|.+.|..|.|+..|..|++++.|..|.+||...++....|. |...|....|.|.. ..-+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4455677899999999999999999999999999999999998888887 77778877887752 46789999999999
Q ss_pred EEECCCC-ce--EEEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc---c--cceee
Q 013475 258 LWDIRTG-KV--AHEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV---E--AYTCP 328 (442)
Q Consensus 258 iwd~~~~-~~--~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~--~~~~~ 328 (442)
+=.+... .+ ...+..|.++|..++.-|+. ..|.+++. |+.+.-+|++........... . .....
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge-------D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE-------DAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCccccccc-------ccceeeeeeccCCccceeeeeccCCccceeee
Confidence 8776533 22 34566789999999998865 56778887 999999999986554333221 1 23567
Q ss_pred eEEecCCCC-eeEEEeCCCeEEEeeCCCCcccc---cceeEeec----ccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 329 CVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLD---KFKRYESH----GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 329 ~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~----~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
.++..|... .+++++.+..+++||.+...... .+..+..+ .....|++++|+.++.-|++.-.|-.|++|.-
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 888899776 78889999999999987543220 11111111 33456899999988877777777888999954
Q ss_pred CC--c----------eeeEe-eeccC--CceeEEEE-cCCCCCEEEEeeCCCcEEEcC
Q 013475 401 RS--S----------ELERK-IKAYE--QACIDVAF-HPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 401 ~~--~----------~~~~~-~~~~~--~~v~~~~~-~p~~~~~l~s~~~dg~i~iwd 442 (442)
.- | ..+.. +++|. ..|.++-| -|.. .++++|++-|.|.|||
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWD 422 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEe
Confidence 32 2 22333 77884 35777776 4565 7999999999999997
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.9e-14 Score=118.35 Aligned_cols=209 Identities=15% Similarity=0.172 Sum_probs=164.1
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC--cceeeeeccCCCceeEEEeCCCC-CEEEEEecC--CcE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD--QKLARVLNFHSAAVNDVKWSQQG-LFVLSCGYD--CSS 214 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d--~~v 214 (442)
+....++.|..++.... .|++|-.+|.+.+|..+.+. ......+. ....+..|.-++.. ..+++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccce
Confidence 44456677777777633 67788889999999986443 22333333 23566677777744 455668888 889
Q ss_pred EEEECCCCcEEEeee----------CCcceEEEEEccC-CCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEE
Q 013475 215 RLVDVEKGIETQSFR----------EELAVRVVKFHPE-NSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~ 282 (442)
++||+++.+.+..-+ ..-.++++.|.+. ..+.|+++..-+.+++||.+.+ +++.++.....+|+++..
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 999999986665544 1224678888775 1478999999999999999875 477888888889999999
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
.|+++.++++.. -+.+..||++.++..........+.+.++..+|..+++++++-|..++|+|..+...+
T Consensus 256 ~p~gn~Iy~gn~-------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 256 TPSGNFIYTGNT-------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cCCCcEEEEecc-------cchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 999999999998 9999999999998877767777889999999999999999999999999999985443
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.61 E-value=1.5e-13 Score=114.73 Aligned_cols=252 Identities=12% Similarity=0.173 Sum_probs=177.6
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
...+++.++||.+.|++...-|. ..-+++.+.|.+++||--.+..+.-.........+++++.+..+...|+.+-..|+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 35677889999999999999888 66789999999999997543322222223334578999999999999999999999
Q ss_pred EEEEECCC----CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE
Q 013475 214 SRLVDVEK----GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 214 v~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
+.-+.+.. ....+.+. |...+..+.|+-. ...+++.+.|..+.---.+.+..+..+... ...+++.+.-. +
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~ 167 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--Y 167 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--E
Confidence 99887643 23333333 8889999999877 478888888877655555555443322111 11122222222 4
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCC-cccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSRE-VPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
...|.. .|.|.+-.+... -.+......+...+.++.|.+....+.+|..|..+.+||+-..... .+..
T Consensus 168 ~fvGd~-------~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~----~~el 236 (404)
T KOG1409|consen 168 AFVGDH-------SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT----AYEL 236 (404)
T ss_pred EEeccc-------ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce----eeee
Confidence 444544 666666655432 2333445567778999999999999999999999999998765432 2333
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
..+...+..+..-+--+.+++++.||.|.+||++
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 3444557777777777899999999999999987
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.8e-13 Score=124.88 Aligned_cols=276 Identities=11% Similarity=0.099 Sum_probs=199.9
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-------------ceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-------------KLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
.....|+.|+.. ..|+|+|+.||.++|..+.+... ..-+++.||.+.|.-+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 456789999999 78999999999999998854321 2335678999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEee---eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE-EEeccCCCCEeEEEEeeCCC
Q 013475 212 CSSRLVDVEKGIETQSF---REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA-HEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 287 (442)
|.|.||-+-++.-.... +.++.|.+++|+.+| ..+.....||.|.+=.+...+.- +.+++ .....+.|++|.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 99999999887544333 257789999999997 77788889998888766533221 12222 2345788999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccce----------eeccccceeeeEEe--------cCCCCeeEEEeCCCeEE
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSK----------QVYVEAYTCPCVRH--------HPFDPYFVAQSNGNYIA 349 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~i~ 349 (442)
.++.+-. +|.+.+||....-..+. ........+..+.| -|+...++++..+|.+.
T Consensus 170 ~~Lf~~a-------nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 170 QALFKKA-------NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred HHHhhhc-------CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 9888887 99999999865321111 01111122444444 35788999999999998
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC---------CcEEEEecCCceeeEeeeccCCceeEEE
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD---------GSIYFYNCRSSELERKIKAYEQACIDVA 420 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~ 420 (442)
+....+......+. ..-.++.+.|+++|..|++++.+ +.|.+|. .-|+.+.+++.....|++++
T Consensus 243 iMR~eND~~Pvv~d------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~ls 315 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVD------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLS 315 (1189)
T ss_pred hhhhcCCCCCeEEe------cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeE
Confidence 87665543322111 12447789999999999998754 2566666 34788888988888999999
Q ss_pred EcCCCCCEEEEeeCCCcEEE
Q 013475 421 FHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~i 440 (442)
|-..| -.++-+ .|+.|++
T Consensus 316 WEg~g-LriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 316 WEGTG-LRIAIA-VDSFIYF 333 (1189)
T ss_pred EcCCc-eEEEEE-ecceEEE
Confidence 99887 455554 4666654
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.58 E-value=2.3e-11 Score=107.29 Aligned_cols=258 Identities=7% Similarity=-0.010 Sum_probs=160.0
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec----------CCcEEEEECCCCcEEEeeeCCcc----
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY----------DCSSRLVDVEKGIETQSFREELA---- 233 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~---- 233 (442)
++|.+.|..+ .+.+..+..-..+ ..+ ++||++.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~--~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCC--CEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7999999844 4666666533222 334 9999999888876 78899999999999988874333
Q ss_pred ----eEEEEEccCCCCEEEEee-C-CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEE
Q 013475 234 ----VRVVKFHPENSNLFLSGG-S-KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVV 307 (442)
Q Consensus 234 ----v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 307 (442)
...++++|+| +++++.. . +..|.+.|+.+++.+.++.-... ..-... .+...++.+. ||....
T Consensus 103 ~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t-~e~~~~~~~~--------Dg~~~~ 171 (352)
T TIGR02658 103 VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPT-ANDTFFMHCR--------DGSLAK 171 (352)
T ss_pred ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEe-cCCccEEEee--------cCceEE
Confidence 3478999997 5555444 4 78999999999999888765322 111112 2222222222 444444
Q ss_pred EeCCCCcccce--eec--ccccee-eeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccc--cceeEeec-----ccccCc
Q 013475 308 WDVSREVPLSK--QVY--VEAYTC-PCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLD--KFKRYESH-----GVSGFP 374 (442)
Q Consensus 308 wd~~~~~~~~~--~~~--~~~~~~-~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~-----~~~~~v 374 (442)
..+........ ... .....+ ..-.+.+ +++++.+... |.|++.|+....... .+..+... -..+..
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33322111110 000 000000 0013345 7777777777 999999965432211 11111110 111223
Q ss_pred EEEEEccCCCEEEEec----------CCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEE-EeeCCCcEEEcC
Q 013475 375 IKCSFSLDGEKLVSGS----------SDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIG-SCSWNGDVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd 442 (442)
.-++++++|+.+++.. ..+.|.++|..+++.+..+.. ...+..++++||+..+|+ +...++.|.|.|
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 3489999999888843 225799999999999998875 568999999999941555 444678888875
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=3.2e-13 Score=110.78 Aligned_cols=158 Identities=16% Similarity=0.259 Sum_probs=107.2
Q ss_pred EEEEEccCCCCEEEEeeC---------CCcEEEEECCC-CceEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 235 RVVKFHPENSNLFLSGGS---------KGLLRLWDIRT-GKVAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
..+.|+++|..+++.... -+...+|.++. +.....+.. ..++|.+++|+|+|+.|++... ..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-----~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-----SMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-----cCCc
Confidence 457888888666555541 13355555532 233344432 3457999999999999866532 0167
Q ss_pred eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
.|.+||++ .+.+..+ .......+.|+|+|+++++++.+ |.|.+||.+....+... .+ ..++.++|+
T Consensus 84 ~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~------~~-~~~t~~~Ws 152 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF------EH-SDATDVEWS 152 (194)
T ss_pred ccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc------cc-CcEEEEEEc
Confidence 99999997 3333332 34466789999999999997644 67999999965443221 22 236899999
Q ss_pred cCCCEEEEecC------CCcEEEEecCCceeeEee
Q 013475 381 LDGEKLVSGSS------DGSIYFYNCRSSELERKI 409 (442)
Q Consensus 381 ~~g~~l~~g~~------dg~i~iwd~~~~~~~~~~ 409 (442)
|+|++|+++.. |+.++||++. |+++...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99999998864 7889999985 6665544
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=3.3e-12 Score=113.38 Aligned_cols=273 Identities=14% Similarity=0.219 Sum_probs=176.0
Q ss_pred EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec-----------CCcEEEE
Q 013475 149 NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-----------DCSSRLV 217 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------d~~v~vw 217 (442)
+-+.|||. |.||+|--.- -|.+|-= .+...++.+. | -.|.-+.|||+.+||+|-+. ...++||
T Consensus 214 tyv~wSP~-GTYL~t~Hk~-GI~lWGG--~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFHKQ-GIALWGG--ESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCC-ceEEEEEecc-ceeeecC--ccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 56889999 9999998764 5889974 2234444444 5 46889999999999999764 2579999
Q ss_pred ECCCCcEEEeeeC---Ccce-EEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 218 DVEKGIETQSFRE---ELAV-RVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 218 d~~~~~~~~~~~~---~~~v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
|+.+|...+.|.. ...+ .-..|+.|+ ++++.-.. ..|.||+..+..++..-...-..|....|+|.++.|+.-.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 9999998888873 2222 346899985 77776655 4799999877554433333446788899999988887644
Q ss_pred CCCCCcCCCCeEEEEeCCCCcc---------------------------------------------------cceeecc
Q 013475 294 DVSGSNMSENSIVVWDVSREVP---------------------------------------------------LSKQVYV 322 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~---------------------------------------------------~~~~~~~ 322 (442)
... ...-.++.+..+.+... +......
T Consensus 366 pe~--~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve 443 (698)
T KOG2314|consen 366 PET--NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE 443 (698)
T ss_pred ccc--cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence 310 00011111111111100 0000111
Q ss_pred ccceeeeEEecCCCCeeEEEeC---CCeEEEeeCCC-CcccccceeEeecccccCcEEEEEccCCCEEEEe---cCCCcE
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSN---GNYIAIFSSTP-PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG---SSDGSI 395 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~---~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g---~~dg~i 395 (442)
-...+..++|.|.|..+++-+. ..++.+|..+. ......++.+.. ...+.+.|+|.|++++.+ +..|.+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccce
Confidence 2234667889999988777433 36788888873 333333333322 335689999999999865 467899
Q ss_pred EEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCC
Q 013475 396 YFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 396 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
.++|+....+...-.......+.+.|.|.| +++++++.-+
T Consensus 520 ~F~D~~~a~~k~~~~~eh~~at~veWDPtG-RYvvT~ss~w 559 (698)
T KOG2314|consen 520 EFYDTDYADLKDTASPEHFAATEVEWDPTG-RYVVTSSSSW 559 (698)
T ss_pred EEEecchhhhhhccCccccccccceECCCC-CEEEEeeehh
Confidence 999987533332222223456789999999 7999987543
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.2e-11 Score=114.85 Aligned_cols=241 Identities=12% Similarity=0.107 Sum_probs=147.1
Q ss_pred cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE--EE-EEecC--CcEEEEECCCCcEEEeeeCCcceEEEEEccCC
Q 013475 169 SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF--VL-SCGYD--CSSRLVDVEKGIETQSFREELAVRVVKFHPEN 243 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--l~-s~~~d--~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (442)
.|.+.|.+.. ... .+......+..-+|+|||+. ++ +...+ ..|.+.++.+++..+.....+.....+|+|||
T Consensus 166 ~l~~~d~dG~--~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQ--NLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCC--Cce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 5666665333 222 23334556778899999875 32 33333 35888899888766555556666778999998
Q ss_pred CCEEEEeeCCC----cEEEEECCCC---ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEE--eCCCCc
Q 013475 244 SNLFLSGGSKG----LLRLWDIRTG---KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVW--DVSREV 314 (442)
Q Consensus 244 ~~~l~~~~~dg----~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw--d~~~~~ 314 (442)
..++++...+| .+.+|++..+ +...............+|+|||+.|+..+. .++...+| ++....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~------~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN------KDGRPRIYIMQIDPEG 316 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC------CCCCceEEEEECcccc
Confidence 66555554333 3444676653 322222233234467899999998887663 14544444 543221
Q ss_pred ccceeeccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC
Q 013475 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
............+....|+|+|+.|+....+ ..|.+||+.++... .+... ...+....|+|||++|+....
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~----~Lt~~--~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY----QLTTS--PENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE----EccCC--CCCccceEECCCCCEEEEEEC
Confidence 1112222223355678999999998876543 47999999876432 11111 123457899999998875432
Q ss_pred ---CCcEEEEecCCceeeEeeeccCCceeEEEEcCCC
Q 013475 392 ---DGSIYFYNCRSSELERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 392 ---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 425 (442)
...|+++|+.+++..... ...+.+...+|+|-.
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 356889999877654333 345567788898753
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.2e-12 Score=119.99 Aligned_cols=213 Identities=11% Similarity=0.111 Sum_probs=138.4
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCC---CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEE-
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMD---QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLS- 207 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s- 207 (442)
...+...+.+..+...+...+|+|| |+.|+..+.+ ..|.+|++.++....+.. ..+.+....|+|||+.|+.
T Consensus 185 d~~g~~~~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 185 DYDGARAVTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred CCCCCCceEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEE
Confidence 4445555667678888999999999 7777665433 368889986654333322 3344567899999998874
Q ss_pred EecCC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 208 CGYDC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 208 ~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
.+.++ .|++||+.+++......+........|+|+|..++++...+| .|+++|+.+++... +...........|+
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~S 339 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLS 339 (430)
T ss_pred EccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEEC
Confidence 44444 688889998876554445555677899999855555554444 57778887776432 22222233457899
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCC
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPP 356 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~ 356 (442)
|+|++++...... ....|.+||+.++... .+.. ........|+|+|+.++..+.+ ..+++++....
T Consensus 340 pdg~~i~~~~~~~----~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 340 ADGKTLVMVHRQD----GNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCCEEEEEEccC----CceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9999998876410 0235888998876532 2211 1123356899999998876643 34666676543
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=4e-12 Score=119.21 Aligned_cols=209 Identities=12% Similarity=0.142 Sum_probs=140.3
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCC---CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMD---QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 208 (442)
...+...+.+..+...+...+|+|| |++|+.+..+ ..|++||+.++.... +..+...+.+++|+||++.|+..
T Consensus 176 d~~g~~~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg~~l~~~ 251 (417)
T TIGR02800 176 DYDGANPQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDGSKLAVS 251 (417)
T ss_pred cCCCCCCEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEE
Confidence 3344555666677778999999999 8877776543 479999986553322 22345667789999999877654
Q ss_pred -ecCC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 209 -GYDC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 209 -~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
+.++ .|++||+.+++......+........|+|+|..++++...++ .|+++|+.+++. ..+..+...+....|+
T Consensus 252 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~s 330 (417)
T TIGR02800 252 LSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWS 330 (417)
T ss_pred ECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEEC
Confidence 4343 589999988866555445555567789999744445544444 588888876654 3444444567788999
Q ss_pred eCCCEEEeccCCCCCcCCCC---eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC---eEEEeeCCC
Q 013475 284 INGKQFVSSSDVSGSNMSEN---SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN---YIAIFSSTP 355 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~i~i~~~~~ 355 (442)
|+|++++.+.. ++ .|.+||+.++... .+. .........|+|++++++..+.++ .+++++...
T Consensus 331 pdg~~i~~~~~-------~~~~~~i~~~d~~~~~~~-~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 331 PDGDLIAFVHR-------EGGGFNIAVMDLDGGGER-VLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCCCEEEEEEc-------cCCceEEEEEeCCCCCeE-Ecc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 99999998876 44 7899998874322 111 112334568999999888866543 455555443
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.3e-10 Score=98.66 Aligned_cols=268 Identities=13% Similarity=0.176 Sum_probs=178.6
Q ss_pred CCcEEEEEcccCCccee-eeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCC--CcEEEeee---CCcceEEE
Q 013475 167 DQSICIWNVWSRDQKLA-RVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEK--GIETQSFR---EELAVRVV 237 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~--~~~~~~~~---~~~~v~~~ 237 (442)
++-|.+|++.+...++. ..+-.+.+.++-|+|+++.+.|.++..+ |.|..|.++. |+....-+ .......+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56899999975433322 2223467889999999999999998764 6787777765 54332222 34445889
Q ss_pred EEccCCCCEEEEeeCCCcEEEEECCC-CceE--EEeccCCCC----------EeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 238 KFHPENSNLFLSGGSKGLLRLWDIRT-GKVA--HEYIQSLGP----------ILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~----------i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
+++++|..++.+-...|.|.++-++. |... .....|.+. +....+.|++++|++... ....
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL------G~Dr 168 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL------GTDR 168 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec------CCce
Confidence 99999744444555678999999865 3321 112223333 788999999999998875 2578
Q ss_pred EEEEeCCCCcccce--eeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCC-cccccceeEe----ecccccCcEE
Q 013475 305 IVVWDVSREVPLSK--QVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPP-FRLDKFKRYE----SHGVSGFPIK 376 (442)
Q Consensus 305 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~-~~~~~~~~~~----~~~~~~~v~~ 376 (442)
|.+|++..+..... ........-..+.|+|++++..+ .--+++|.+|..+.. ..+..++... ..........
T Consensus 169 i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 169 IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 99999997653322 22245567889999999998766 456889999998874 2332222211 1122344567
Q ss_pred EEEccCCCEEEEecC-CCcEEEEecCC--cee--eEeeeccCCceeEEEEcCCCCCEEEEeeCC-CcEEEc
Q 013475 377 CSFSLDGEKLVSGSS-DGSIYFYNCRS--SEL--ERKIKAYEQACIDVAFHPILPNIIGSCSWN-GDVSVY 441 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~-dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iw 441 (442)
+.+++||++|+++.. ...|.+|.+.. +++ +.....+...-.++.|++.+ ++|+.+..| ..|.||
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf 318 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVF 318 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEE
Confidence 899999999998764 34788887754 322 22223344457899999999 677777655 456554
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.4e-12 Score=118.64 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=132.6
Q ss_pred cCCcceecccccccceEEEEeeCCCCCEEEEecC-CC--cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE-
Q 013475 133 IPGRLSTALCHHTKAVNSINWSPTHAHLLASAGM-DQ--SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC- 208 (442)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~- 208 (442)
..+...+.+..+...+.+..|+|| |+.|+..+. ++ .|.+||+.+++...+..+. +......|+|||+.|+..
T Consensus 205 ~dG~~~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 205 YDGYNEQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVL 280 (448)
T ss_pred CCCCCceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEE
Confidence 344444555666778889999999 776766543 33 5888888655433333333 334578999999988754
Q ss_pred ecCCc--EEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEee
Q 013475 209 GYDCS--SRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 209 ~~d~~--v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 284 (442)
+.++. |++||+.+++......+........|+|+|..++++...++ .|+++|+.+++... +...........|+|
T Consensus 281 ~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~Sp 359 (448)
T PRK04792 281 SKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITP 359 (448)
T ss_pred eCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECC
Confidence 55564 88889988876554445556678899999855555554444 47777887766433 222222334578999
Q ss_pred CCCEEEeccCCCCCcCCCC--eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-C--eEEEeeCCCC
Q 013475 285 NGKQFVSSSDVSGSNMSEN--SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-N--YIAIFSSTPP 356 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~i~i~~~~~~ 356 (442)
||++|+..+.. ++ .|.++|+.++... .+.. . .......|+|+++.++..... + .+++++.+..
T Consensus 360 DG~~l~~~~~~------~g~~~I~~~dl~~g~~~-~lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 360 DGRSMIMVNRT------NGKFNIARQDLETGAMQ-VLTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCEEEEEEec------CCceEEEEEECCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 99998886641 23 5666787776432 1111 1 122345799999988775543 2 3666776543
No 252
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.6e-13 Score=120.38 Aligned_cols=256 Identities=14% Similarity=0.220 Sum_probs=173.7
Q ss_pred ccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC-----CcceeeeeccCCCceeEEEeCCCCCEEE
Q 013475 132 KIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-----DQKLARVLNFHSAAVNDVKWSQQGLFVL 206 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 206 (442)
.+..-.+..+.||+..|..++--.+ .+-+++++.|++|++|.++.. ...+..++..|..+|.++.|..+.++++
T Consensus 722 n~~~irL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 722 NFDHIRLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred ccceeeeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee
Confidence 3445566788999999999987766 778999999999999998643 2246778889999999999999988887
Q ss_pred EEecCCcEEEEECCCCcEEEeee---CCcceEEEEEccC-CCCEEEEe-eCCCcEEEEECCCCceEEEec-----cCCCC
Q 013475 207 SCGYDCSSRLVDVEKGIETQSFR---EELAVRVVKFHPE-NSNLFLSG-GSKGLLRLWDIRTGKVAHEYI-----QSLGP 276 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~ 276 (442)
++ ||.|.+||.--++.+.... ..+.+..+...++ +..+++.| +...+|+++|.+..+...+++ +...-
T Consensus 801 Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 65 8899999998887766443 2333333333333 23444444 778899999999887666554 33456
Q ss_pred EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc------------------ceeeeEEecC----
Q 013475 277 ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA------------------YTCPCVRHHP---- 334 (442)
Q Consensus 277 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~~~~~~~~~---- 334 (442)
+.+++..+.|++++.+-. +|.|.+.|.++++.+..+...+- .....+.|+.
T Consensus 879 ~R~iaVa~~GN~lAa~LS-------nGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALS-------NGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eeEEEeccCcchhhHHhc-------CCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCe
Confidence 889999999999999987 99999999999886653321110 0011121221
Q ss_pred -----------------CCCeeEEEeCCCeEEEeeCCCCccc-ccceeEeecccccCcEEEEEccCCCEEEEecCCCcEE
Q 013475 335 -----------------FDPYFVAQSNGNYIAIFSSTPPFRL-DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIY 396 (442)
Q Consensus 335 -----------------~~~~l~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 396 (442)
-|..+++..+++.+.+|.-...... ..+.+++.....+..+.++.-|-..-++.|.+.|.|.
T Consensus 952 mh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 952 MHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred eeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCcee
Confidence 1345666777777777754332211 1122333334445566677667666666777777665
Q ss_pred E
Q 013475 397 F 397 (442)
Q Consensus 397 i 397 (442)
+
T Consensus 1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred e
Confidence 4
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=5.8e-12 Score=103.29 Aligned_cols=261 Identities=11% Similarity=0.132 Sum_probs=178.5
Q ss_pred CCCcEEEEEcccCCcceeeee-ccCCCceeEEEeCC---CCC-EEEEEecCCcEEEEECCCCcEEEeeeC-------Ccc
Q 013475 166 MDQSICIWNVWSRDQKLARVL-NFHSAAVNDVKWSQ---QGL-FVLSCGYDCSSRLVDVEKGIETQSFRE-------ELA 233 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~---~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~-------~~~ 233 (442)
.-|.+.+|++...+.....++ ...+..+..+.|.- ++. .++-+-.+|.|.++..........++. ...
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 346788998854432222122 22346677888864 444 456666789999998766554444431 112
Q ss_pred eEEEEEccCCCCEEEEeeCCCcEEEEECCCCce--EEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeC
Q 013475 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV--AHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDV 310 (442)
Q Consensus 234 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~ 310 (442)
..++.|++.+ ..++++..+|.+.+-+...... ++.++.|.-++....|+. +.+.+.+|++ |+.+..||+
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD-------D~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD-------DGSLSCWDI 195 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCC-------CceEEEEEe
Confidence 4567788875 6688888899999666555543 347889999999899976 4467889998 999999999
Q ss_pred CC-CcccceeeccccceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC--CCEE
Q 013475 311 SR-EVPLSKQVYVEAYTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD--GEKL 386 (442)
Q Consensus 311 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l 386 (442)
+. ++.+......|...+.++.-+| .+.++++|+.|..|++||.++..+.. ......+.|.++.++|. +++|
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-----~~~~v~GGVWRi~~~p~~~~~lL 270 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-----FKAKVGGGVWRIKHHPEIFHRLL 270 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-----ccCccccceEEEEecchhhhHHH
Confidence 94 3344444455666788887776 56789999999999999998654321 12233367899999994 4556
Q ss_pred EEecCCCcEEEEecCCc--e---eeEeeeccCCceeEEEEcCCCCCEEEEee-CCCcEE-Ec
Q 013475 387 VSGSSDGSIYFYNCRSS--E---LERKIKAYEQACIDVAFHPILPNIIGSCS-WNGDVS-VY 441 (442)
Q Consensus 387 ~~g~~dg~i~iwd~~~~--~---~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~-iw 441 (442)
+++-.+| .+|-++..+ + .....+.|.+-+..-.|.... .+|+||+ .|+.++ +|
T Consensus 271 ~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 271 AACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHHHhcC-ceEEEecccccchheeeeccccccceeecccccccc-ceeeeeeccccceeeee
Confidence 6666666 677777654 3 344556788888888886654 5899976 577755 66
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.5e-10 Score=96.08 Aligned_cols=271 Identities=16% Similarity=0.218 Sum_probs=182.4
Q ss_pred ccccccceEEEEeeCCCCCEEEEecC---CCcEEEEEcccCCcce--eeeeccCCCceeEEEeCCCCCEEEEEec-CCcE
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGM---DQSICIWNVWSRDQKL--ARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSS 214 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~---dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v 214 (442)
+-.+.+..+-|+|+|+ ++.|+++.. +|.|.-|.++...+.+ +........+-+.+++++++++|+++.. -|.|
T Consensus 35 ~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 35 LVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 3456788899999999 888888754 5789999886543332 2222223344488999999999999987 5889
Q ss_pred EEEECCC-Cc---EEEeeeCCcc----------eEEEEEccCCCCEEEEee-CCCcEEEEECCCCceE----EEeccCCC
Q 013475 215 RLVDVEK-GI---ETQSFREELA----------VRVVKFHPENSNLFLSGG-SKGLLRLWDIRTGKVA----HEYIQSLG 275 (442)
Q Consensus 215 ~vwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~----~~~~~~~~ 275 (442)
.++-+.. |. .+..+.|.+. +....|.|++ ++|++.. .-..|.+|++..++.. ..++ ...
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~ 191 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGA 191 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccC-CCC
Confidence 9999865 42 3344556555 8899999997 5666553 3347999999977543 2222 334
Q ss_pred CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC-cccceee--------ccccceeeeEEecCCCCeeEEEeCC-
Q 013475 276 PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE-VPLSKQV--------YVEAYTCPCVRHHPFDPYFVAQSNG- 345 (442)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~- 345 (442)
.-+.|.|+|++++.....++ +++|.+|..... ..+..+. +........+..+++|++|.++...
T Consensus 192 GPRHi~FHpn~k~aY~v~EL------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNEL------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred CcceEEEcCCCcEEEEEecc------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence 55889999999998888763 899999999874 2222211 2234567789999999999987654
Q ss_pred CeEEEeeCCCCccc-ccceeEeecccccCcEEEEEccCCCEEEEecCCC-cEEEEecC--CceeeEeee-ccCCceeEEE
Q 013475 346 NYIAIFSSTPPFRL-DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG-SIYFYNCR--SSELERKIK-AYEQACIDVA 420 (442)
Q Consensus 346 ~~i~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~iwd~~--~~~~~~~~~-~~~~~v~~~~ 420 (442)
+.|.+|.+...... ..+.... .+........|++.|++|++...++ .|.+|.++ +|++-.... .......||.
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~--teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITP--TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEec--cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEE
Confidence 47888877654332 2111111 2223367899999999999887654 58888664 455433322 2233455666
Q ss_pred Ec
Q 013475 421 FH 422 (442)
Q Consensus 421 ~~ 422 (442)
|.
T Consensus 344 f~ 345 (346)
T COG2706 344 FL 345 (346)
T ss_pred Ec
Confidence 64
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=1.7e-12 Score=108.58 Aligned_cols=247 Identities=13% Similarity=0.168 Sum_probs=183.3
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE-CCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD-VEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
..+...++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+. ....++++.++++ ...|++|-.+|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEEEEEEecceE
Confidence 456677889999999999888888899999999999994 45566555555 4678999999998 5889999999999
Q ss_pred EEEECC----CCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEe
Q 013475 257 RLWDIR----TGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRH 332 (442)
Q Consensus 257 ~iwd~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 332 (442)
.-+.+. +....+.+..|...+..+-|+....++++.+. |..+.---.+.+..+......... ..+.+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~-------dk~~~~hc~e~~~~lg~Y~~~~~~--t~~~~ 163 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK-------DKQFAWHCTESGNRLGGYNFETPA--SALQF 163 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc-------ccceEEEeeccCCcccceEeeccC--CCCce
Confidence 988664 34456777889999999999999999999997 777765555555444332221111 11111
Q ss_pred cCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce-eeEeeec
Q 013475 333 HPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE-LERKIKA 411 (442)
Q Consensus 333 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~ 411 (442)
.-. +..+|...+.|....+...... .+..+. .+.+.++++.|.+....|++|..|..+.+||+--.+ ...++.+
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~-~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQ-LITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCc-eEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 111 4455666666666555433222 223344 445779999999999999999999999999997543 3467789
Q ss_pred cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 412 YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 412 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.+.|..+..-+.- +.|++++.||.|.+||
T Consensus 239 h~~kV~~l~~~~~t-~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 239 HNDKVQALSYAQHT-RQLISCGEDGGIVVWN 268 (404)
T ss_pred chhhhhhhhhhhhh-eeeeeccCCCeEEEEe
Confidence 99999999888876 7999999999999997
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=4.4e-13 Score=133.62 Aligned_cols=225 Identities=17% Similarity=0.218 Sum_probs=175.9
Q ss_pred cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc
Q 013475 188 FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK 265 (442)
Q Consensus 188 ~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (442)
.+-..|.++.=+|...+-++|+.||.|++|....++.+..++ ....|+.+.|+.+| +.+..+..||.+.+|... .+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-Cc
Confidence 356778888889988999999999999999999999998888 45789999999997 777888889999999986 66
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
+....+.|.....++.|-. ..+++.+. +..++.+.+||.........+..-|....+++++.|..+.|++|+.+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~----s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGR----SSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhcccc----CCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 7778888988888888865 55555543 33488999999876544444446778899999999999999999999
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec---cCCc--e--eE
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA---YEQA--C--ID 418 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~--v--~~ 418 (442)
|.|++||++.......++. +. ...+|++|+..|.|+||++....+++++.. |.+. . ..
T Consensus 2358 G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q 2422 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQ 2422 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCce
Confidence 9999999987655433332 33 457999999999999999998877777653 1111 1 22
Q ss_pred EEEcCCCCCEEEEeeCCCc
Q 013475 419 VAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 419 ~~~~p~~~~~l~s~~~dg~ 437 (442)
+...+. ..|.+|+.||+
T Consensus 2423 ~~v~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2423 INVGQC--NRIFSCGADGT 2439 (2439)
T ss_pred eeeccC--ceEEEecCCCC
Confidence 223333 47888888874
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.3e-12 Score=113.71 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=145.9
Q ss_pred CCCCEEEEEecCCcEEEEECCCCcEEEeee----CCcceEEEEEc------c-------------CCCCEEEEeeCCCcE
Q 013475 200 QQGLFVLSCGYDCSSRLVDVEKGIETQSFR----EELAVRVVKFH------P-------------ENSNLFLSGGSKGLL 256 (442)
Q Consensus 200 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 256 (442)
+...+++....||.+++||..+++..+.|. ..+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 446789999999999999999998888876 24445555552 1 134678888889999
Q ss_pred EEEECCCCceEEEec--cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC
Q 013475 257 RLWDIRTGKVAHEYI--QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
.+|++..++....+. .|.+.|+++.++.+-..|.+++. |..+..|+......+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a-------d~~v~~~~~~~~~~~------------------ 137 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA-------DLKVVYILEKEKVII------------------ 137 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCC-------ceeEEEEecccceee------------------
Confidence 999999998887775 68889999999999999999998 999999998865432
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ 414 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 414 (442)
++|.... ..+.+++++|||+.+++++ +.|++||+++++.+..|.+|.+
T Consensus 138 --------------~~~~~~~----------------~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 138 --------------RIWKEQK----------------PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred --------------eeeccCC----------------CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc
Confidence 2232211 2356889999999999987 5699999999999999999999
Q ss_pred ceeEEEEcCC-----CCCEEEEeeCCCcEEEc
Q 013475 415 ACIDVAFHPI-----LPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 415 ~v~~~~~~p~-----~~~~l~s~~~dg~i~iw 441 (442)
.|.+++|--+ |..+|.+...+..+.+|
T Consensus 186 ~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 186 PVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ceEEEEEEEeccccccceeeeccccccceeEE
Confidence 9999999876 53455555555566666
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=3.1e-12 Score=107.07 Aligned_cols=272 Identities=21% Similarity=0.312 Sum_probs=173.1
Q ss_pred cceEEEEeeCCC-CCEEEEecCCCcEEEEEcccCCcce---------------------------------eee-eccCC
Q 013475 146 KAVNSINWSPTH-AHLLASAGMDQSICIWNVWSRDQKL---------------------------------ARV-LNFHS 190 (442)
Q Consensus 146 ~~V~~~~~s~~~-~~~l~s~~~dg~i~iwd~~~~~~~~---------------------------------~~~-~~~h~ 190 (442)
..|+.+.|.+++ ...++..+.|++|++|.+.....+. .+. -..|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 578999999873 3456667789999999986443222 111 12488
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE---EEeee------CCcceEEEEEccCCCCEEEEeeCCCcEEEEEC
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE---TQSFR------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 261 (442)
..|++|.++.|...++++. |=.|.+|+++--.. +..++ ....|++..|+|...++|+-.+..|+|++.|+
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 8899999999999998865 78899999875322 22222 13468999999998889999999999999999
Q ss_pred CCCceEE----Ee------------ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC-Ccccceeecccc
Q 013475 262 RTGKVAH----EY------------IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVEA 324 (442)
Q Consensus 262 ~~~~~~~----~~------------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~ 324 (442)
+...... .+ ..--..|.++.|+.+|+++++-.. -+|++||+.. .+++.+...+..
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--------ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--------LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--------ceeEEEeccccCCcceEEeehHh
Confidence 8543211 11 112246889999999999999874 7999999954 344433332211
Q ss_pred --------------ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec
Q 013475 325 --------------YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 325 --------------~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
..-..++|+-++.++++|+..+.+++|+...+..... ++........+..+ ..-+.+.+++
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~--tl~asr~~~~~~~~---~k~~~V~~~g 390 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF--TLEASRKNMKPRKV---LKLRLVSSSG 390 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceee--cccccccCCccccc---ccceeeecCC
Confidence 1223467888999999999999999999665533211 00000000001110 1123444444
Q ss_pred CCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 391 SDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 391 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
......+| +..+ .....+...+|+|.. +.+|.+..+ .++||
T Consensus 391 ~r~~~~~~-------vd~l-df~kkilh~aWhp~e-n~ia~aatn-nlyif 431 (433)
T KOG1354|consen 391 KRKRDEIS-------VDAL-DFRKKILHTAWHPKE-NSIAVAATN-NLYIF 431 (433)
T ss_pred Cccccccc-------cchh-hhhhHHHhhccCCcc-ceeeeeecC-ceEEe
Confidence 44332111 0111 123456778999998 688777644 45554
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=3.7e-12 Score=121.21 Aligned_cols=193 Identities=13% Similarity=0.163 Sum_probs=155.3
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceE-----EEEEccCCCCEEEEeeCCCcEEEEECCCCc
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVR-----VVKFHPENSNLFLSGGSKGLLRLWDIRTGK 265 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (442)
..|....+.-+...++..+.++.+.+||...+.....+.+...+. -+.++++ .-++++|+.-+.|.+|+....+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccC
Confidence 444445566677889999999999999999988888777554432 2234555 5788999999999999998444
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
.-..+.+|.+.|.++.|+.||.++++.++ |.++++|++.+.+...-
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-------DRsiRlW~i~s~~~~~~--------------------------- 212 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD-------DRSIRLWPIDSREVLGC--------------------------- 212 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEec-------CcceeeeecccccccCc---------------------------
Confidence 44468999999999999999999999999 99999999998764420
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-CCceeEEEEcCC
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-EQACIDVAFHPI 424 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~ 424 (442)
....|...+..++|.++ +|++++.|.+.++|+.+ ++.+..+..| ...|..++..++
T Consensus 213 --------------------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 213 --------------------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred --------------------ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCC
Confidence 11245577888999988 99999999999999765 5556688888 458999999999
Q ss_pred CCCEEEEeeCCCcEEEcC
Q 013475 425 LPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 425 ~~~~l~s~~~dg~i~iwd 442 (442)
. .+++|++.||.+++||
T Consensus 270 ~-~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 270 V-IIKVTGGNDSTLKLWD 286 (967)
T ss_pred c-eEEEeeccCcchhhhh
Confidence 7 7999999999999996
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=3.1e-11 Score=108.36 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=147.2
Q ss_pred CCCEEEEecCCCcEEEEEcccCCcceeeeecc---CCCceeEEEeC--------------------CCCCEEEEEecCCc
Q 013475 157 HAHLLASAGMDQSICIWNVWSRDQKLARVLNF---HSAAVNDVKWS--------------------QQGLFVLSCGYDCS 213 (442)
Q Consensus 157 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~~~--------------------~~~~~l~s~~~d~~ 213 (442)
...|+|....||.++||+...+ ++...+.. -++..++..|. .+...++-|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3779999999999999998554 33333321 23344454442 13346777888999
Q ss_pred EEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 214 SRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
|.+|++..++....+. |.+.|+++.++.+ -..|.+++.|+.+..|+....+.++.++.....+.+++.+|||+.++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999999999988887 8899999999987 58899999999999999999999999999989999999999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC-----CCeeEEE-eCCCeEEEeeCCC
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF-----DPYFVAQ-SNGNYIAIFSSTP 355 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~-~~~~~i~i~~~~~ 355 (442)
+++ +.|++||+++++.+.+ ..+|...+.++.|... |.+++++ ..+..+.+|-.+.
T Consensus 161 ~as---------~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS---------RQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc---------ceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 987 6999999999877654 4567778999988776 6777663 3455566665554
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.4e-11 Score=111.81 Aligned_cols=218 Identities=12% Similarity=0.069 Sum_probs=136.6
Q ss_pred ccccCCcceecccccccceEEEEeeCCCCC---EEEEecCCC--cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 130 RSKIPGRLSTALCHHTKAVNSINWSPTHAH---LLASAGMDQ--SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 130 ~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~---~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
.....+...+.|......+.+-+|||| |+ ++++...+| .|.+.++.++....+..+. +.....+|+|||+.
T Consensus 169 ~~d~dG~~~~~lt~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPDG~~ 244 (428)
T PRK01029 169 SVDYDGQNLRPLTQEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPRKKL 244 (428)
T ss_pred EEcCCCCCceEcccCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCCCCE
Confidence 344455555566666677788899999 54 333554444 5667777655444444443 44557899999998
Q ss_pred EEEEec-CC----cEEEEECCCC---cEEEeeeCC-cceEEEEEccCCCCEEEEeeCCCcEEEE--ECCC-CceEEEecc
Q 013475 205 VLSCGY-DC----SSRLVDVEKG---IETQSFREE-LAVRVVKFHPENSNLFLSGGSKGLLRLW--DIRT-GKVAHEYIQ 272 (442)
Q Consensus 205 l~s~~~-d~----~v~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~-~~~~~~~~~ 272 (442)
|+..+. +| .+.+|++..+ +..+..... ......+|+|||..++++...+|...+| ++.. +.....+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 887663 22 3444777653 333333322 3446789999985555555556654555 4432 233444555
Q ss_pred CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC---CCeEE
Q 013475 273 SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN---GNYIA 349 (442)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~i~ 349 (442)
+...+....|+|||+.|+...... ....|.+||+.+++.... . .....+....|+|+|+.|+.... ...|+
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~~L-t-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDYQL-T-TSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeEEc-c-CCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 555677899999999998776410 135799999988754322 1 22335667899999998876443 35688
Q ss_pred EeeCCCCc
Q 013475 350 IFSSTPPF 357 (442)
Q Consensus 350 i~~~~~~~ 357 (442)
++++.++.
T Consensus 399 ~vdl~~g~ 406 (428)
T PRK01029 399 LISLITKK 406 (428)
T ss_pred EEECCCCC
Confidence 88887654
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=6.8e-10 Score=98.11 Aligned_cols=254 Identities=11% Similarity=0.066 Sum_probs=157.6
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeeccC-------CCceeEEE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNFH-------SAAVNDVK 197 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~l~ 197 (442)
.+.+.++..-..+-. + +||| ++.|+.+. .+..|.+||..+. +.+..+.-- ......++
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEE
Confidence 344444443333322 4 9999 66665554 4789999999554 555555421 22344789
Q ss_pred eCCCCCEEEEEec--CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-Cce-EEE---e
Q 013475 198 WSQQGLFVLSCGY--DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKV-AHE---Y 270 (442)
Q Consensus 198 ~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~---~ 270 (442)
+++||++|++... +..|.+.|+.+++.+.++.......-...+.+ .++ +-+.||......+.+ ++. ... +
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~-~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND-TFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC-ccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence 9999999998773 68999999999999998886444333333332 122 223345444433322 221 111 1
Q ss_pred ccCCCCEe-EEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc-----cceeecc------ccceeeeEEecCCCC
Q 013475 271 IQSLGPIL-DVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVP-----LSKQVYV------EAYTCPCVRHHPFDP 337 (442)
Q Consensus 271 ~~~~~~i~-~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~ 337 (442)
.....++. .-.|.+ +|+++.... .|.|.+.|+..... ....... ......-++++++++
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~--------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTY--------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEec--------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11001110 004455 788887777 69999999654322 1111111 122334499999999
Q ss_pred eeEEEe----------CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC-EEEEec-CCCcEEEEecCCcee
Q 013475 338 YFVAQS----------NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVSGS-SDGSIYFYNCRSSEL 405 (442)
Q Consensus 338 ~l~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~-~dg~i~iwd~~~~~~ 405 (442)
.+++.. ..+.|.++|..+......+. ....+..+++++||+ +|++.+ .++.|.++|..+++.
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 888743 23689999998876553322 123577999999999 887666 578899999999999
Q ss_pred eEeee
Q 013475 406 ERKIK 410 (442)
Q Consensus 406 ~~~~~ 410 (442)
+.++.
T Consensus 335 i~~i~ 339 (352)
T TIGR02658 335 LSSVN 339 (352)
T ss_pred Eeeec
Confidence 98873
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.46 E-value=3.5e-11 Score=97.49 Aligned_cols=247 Identities=11% Similarity=-0.020 Sum_probs=165.7
Q ss_pred CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-----CCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEE
Q 013475 166 MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-----QGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVK 238 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~ 238 (442)
....|-+|++....+..+..+. .+.|.| ...+|+.|+.-|...+|...+.+....+- +...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 3446778887665444444443 344444 34589999999999999998765443332 333333222
Q ss_pred EccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc--
Q 013475 239 FHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL-- 316 (442)
Q Consensus 239 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-- 316 (442)
=.-+....+..++.|.++++.++.-+..........-.+.++.+++|++++++.++ ...|..|.+......
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgd-------s~~Vf~y~id~~sey~~ 195 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGD-------SRRVFRYAIDDESEYIE 195 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecC-------CCcceEEEeCCccceee
Confidence 22222345667788888888887644322222111123789999999999999998 899999998764332
Q ss_pred ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC--CEEEEecCCCc
Q 013475 317 SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG--EKLVSGSSDGS 394 (442)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~ 394 (442)
..........-.+..|+.....++++..||.+.|||++...............+.+.+..+.|++.| .+|+..-.-+.
T Consensus 196 ~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 196 NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR 275 (344)
T ss_pred eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce
Confidence 2233333445567889999999999999999999999987655444444445578899999999866 45666666778
Q ss_pred EEEEecCCceeeEeeec-------cC-CceeEEEEcCCCC
Q 013475 395 IYFYNCRSSELERKIKA-------YE-QACIDVAFHPILP 426 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~~-------~~-~~v~~~~~~p~~~ 426 (442)
+.+.|++++.-.+.+.. |. ..|..-.|+.++.
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 99999999866555432 22 2377777777763
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=6.9e-11 Score=104.21 Aligned_cols=277 Identities=14% Similarity=0.180 Sum_probs=182.6
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC------------
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD------------ 211 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------------ 211 (442)
-.-++..++|||. |.+|++... ..|.+|.-.... ++. .+. ...|..+.|+|+++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~-~~V~~~~g~~~~-~l~-~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHA-AGVECWGGPSKA-KLV-RFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCc-chheehhhc-cceEEccccchh-hee-eee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 4567889999999 999988765 469999974442 333 333 3679999999999999986543
Q ss_pred ---CcEEEEECCCCcEEEeeeC-Ccc--eE-EEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEecc-CCCCEeEEEE
Q 013475 212 ---CSSRLVDVEKGIETQSFRE-ELA--VR-VVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQ-SLGPILDVEF 282 (442)
Q Consensus 212 ---~~v~vwd~~~~~~~~~~~~-~~~--v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~i~~~~~ 282 (442)
+.+.+||+.++..+..+.. ... .+ -+.|+-++ .+++-- ....++|+++ +... ...+.. ....|....|
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 3599999999999988873 222 34 67888875 554433 2346999997 3322 111111 1356888889
Q ss_pred eeCCC--EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe-----------CCCeEE
Q 013475 283 TINGK--QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-----------NGNYIA 349 (442)
Q Consensus 283 ~~~~~--~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~i~ 349 (442)
+|.++ .|+.-. ......++.+++|.+.....+........ .-..+.|++.|+++++-. ....++
T Consensus 182 sP~~n~~~la~~t--PEk~~kpa~~~i~sIp~~s~l~tk~lfk~-~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 182 SPEGNHDELAYWT--PEKLNKPAMVRILSIPKNSVLVTKNLFKV-SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred cCCCCCceEEEEc--cccCCCCcEEEEEEccCCCeeeeeeeEee-cccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 98643 333322 23334489999999987665554433332 345688999999887621 125677
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe--cCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCC
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG--SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPN 427 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 427 (442)
++++...... ... ...+.|...+|.|.++.+++. -.+-.+.++|++.. +...+ .+..=+.+.|+|.+ +
T Consensus 259 l~~~~e~~i~----V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~-r 328 (561)
T COG5354 259 LLRITERSIP----VEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHE-R 328 (561)
T ss_pred EEeecccccc----eec--cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcc-c
Confidence 7877632211 111 224678899999988877654 46788999998854 33333 34555667888888 6
Q ss_pred EEEEeeCC---CcEEEcC
Q 013475 428 IIGSCSWN---GDVSVYE 442 (442)
Q Consensus 428 ~l~s~~~d---g~i~iwd 442 (442)
+++.++-| |.+-|||
T Consensus 329 ~il~agF~nl~gni~i~~ 346 (561)
T COG5354 329 YILFAGFDNLQGNIEIFD 346 (561)
T ss_pred EEEEecCCccccceEEec
Confidence 77776655 5677765
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=3.9e-10 Score=115.26 Aligned_cols=245 Identities=11% Similarity=0.086 Sum_probs=163.7
Q ss_pred EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc--------------CCCceeEEEeCCCCCEEEEEec-CCc
Q 013475 149 NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF--------------HSAAVNDVKWSQQGLFVLSCGY-DCS 213 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~~l~s~~~-d~~ 213 (442)
..+++++++++++++-+.++.|++||... ..+..+.+ +-.....|++.++++.|+++.. .+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G---~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG---NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC---CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46788886577888888889999999732 22322221 1123578999998887666654 567
Q ss_pred EEEEECCCCcEEEeeeC------------------CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC--
Q 013475 214 SRLVDVEKGIETQSFRE------------------ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-- 273 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 273 (442)
|+++|+.++... .+.. -.....++|++++..++++...++.|++||..++... .+.+.
T Consensus 648 Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 648 LREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 999998876532 2210 1234689999965578888888899999998776432 22111
Q ss_pred -------------CCCEeEEEEeeCCCEEE-eccCCCCCcCCCCeEEEEeCCCCccccee-----------ecc------
Q 013475 274 -------------LGPILDVEFTINGKQFV-SSSDVSGSNMSENSIVVWDVSREVPLSKQ-----------VYV------ 322 (442)
Q Consensus 274 -------------~~~i~~~~~~~~~~~l~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-----------~~~------ 322 (442)
......|+++++++.|+ +-.. ++.|++||+.++...... ...
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 12346799999998554 4444 799999999865421100 000
Q ss_pred ---ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe--------ecccccCcEEEEEccCCCEEEEecC
Q 013475 323 ---EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE--------SHGVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 323 ---~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
.......++++++|..+++...++.|++||..+.........-. ....-..+..++++++|+++++-+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 01123578899999999999999999999987654321110000 0011124678999999999999899
Q ss_pred CCcEEEEecCCcee
Q 013475 392 DGSIYFYNCRSSEL 405 (442)
Q Consensus 392 dg~i~iwd~~~~~~ 405 (442)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999988754
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.6e-11 Score=109.53 Aligned_cols=196 Identities=14% Similarity=0.208 Sum_probs=154.3
Q ss_pred eeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec
Q 013475 193 VNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 193 v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (442)
-..|+++.-..-|+.++....|+-++++.|..+..|. ..+.++++..++.+ .+|++|+.+|.|.+||.++...+..+.
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeee
Confidence 3456665534445556667779999999999999999 45889999999985 899999999999999999876655543
Q ss_pred c------CCC-----CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-ee
Q 013475 272 Q------SLG-----PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-YF 339 (442)
Q Consensus 272 ~------~~~-----~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 339 (442)
. |.+ .|+++.|+.+|-.+++|+. +|.+.|||++..+++.........++..+.|.+.+. --
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-------~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-------TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeecc-------CCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 2 222 4999999999999999998 999999999999988887777788899999977643 34
Q ss_pred EEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 340 VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 340 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
++......++|||-.++.....+ .....+..+++-|++.+++++..++.+..|=+..
T Consensus 288 v~S~Dk~~~kiWd~~~Gk~~asi------Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 288 VVSMDKRILKIWDECTGKPMASI------EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred EEecchHHhhhcccccCCceeec------cccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 55556678999999887654322 2223477889999999999999998887776553
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=2.2e-10 Score=101.13 Aligned_cols=280 Identities=12% Similarity=0.135 Sum_probs=187.0
Q ss_pred cceEEEEeeCCCCCEEEEecCCC---------------cEEEEEcccCCcceeeeeccCCCc--ee-EEEeCCCCCEEEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQ---------------SICIWNVWSRDQKLARVLNFHSAA--VN-DVKWSQQGLFVLS 207 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~s 207 (442)
..|..+.|||. ++||.+-+..+ .+.+||+.+ +.++..+.+...+ .. -+.|+-+.++++-
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s--g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS--GMIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccC--ceeEeeccccCCcccccceeeeeecchhhhh
Confidence 56899999999 99999876543 489999954 4777777765555 44 6788988887775
Q ss_pred EecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCC-CCEEEE-----eeCCCcEEEEECCCCceEEEeccCCCCEeE
Q 013475 208 CGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPEN-SNLFLS-----GGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
.. ...++|+++...-....+. ....+....|+|.+ ...|+. .+..+++++|.+..+..+.+-......=..
T Consensus 149 vv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 149 VV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred hc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 53 4569999973222222222 24668888899873 233332 466789999999877665443332233356
Q ss_pred EEEeeCCCEEEeccCCCC----CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE--EeCCCeEEEeeC
Q 013475 280 VEFTINGKQFVSSSDVSG----SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA--QSNGNYIAIFSS 353 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~i~~~ 353 (442)
+.|.+.|++|+.-..... +...+..+.|++++..... ... .....|..++|.|.++.+++ |...-.+.++|+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eec-cccccceeeeecccCCceeEEecccccceeeccc
Confidence 889999988765332111 1112467889998843322 221 44668999999999988776 457888999999
Q ss_pred CCCcccccceeEeecccccCcEEEEEccCCCEEEEecC---CCcEEEEecCCceeeE-eeeccCCceeEEEEcCCCCCEE
Q 013475 354 TPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS---DGSIYFYNCRSSELER-KIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l 429 (442)
+....... . ...-..+.|+|.+++++.++- .|.|.+||......+. .+.+ ....-+.|+|++ +++
T Consensus 306 r~Nl~~~~------P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~-qF~ 374 (561)
T COG5354 306 RGNLRFYF------P--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDG-QFY 374 (561)
T ss_pred ccceEEec------C--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCc-eEE
Confidence 87633211 1 112245789999999998765 4679999987654433 5554 345567899999 566
Q ss_pred EEee------CCCcEEEcC
Q 013475 430 GSCS------WNGDVSVYE 442 (442)
Q Consensus 430 ~s~~------~dg~i~iwd 442 (442)
.+.. .|..|+|||
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EecCCCcccccCcceEEEE
Confidence 6553 478899986
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6e-11 Score=105.81 Aligned_cols=252 Identities=14% Similarity=0.201 Sum_probs=164.8
Q ss_pred EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC--CEEEE-----EecCCcEEEEECCC
Q 013475 149 NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG--LFVLS-----CGYDCSSRLVDVEK 221 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s-----~~~d~~v~vwd~~~ 221 (442)
++..|+.| ..+. .=-..+.+.+|++.+. ...... -|...|+.+.++|.+ ..+++ .+.-..|+||....
T Consensus 129 W~~qfs~d-Esl~-arlv~nev~f~~~~~f-~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSID-ESLA-ARLVSNEVQFYDLGSF-KTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccc-hhhh-hhhhcceEEEEecCCc-cceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 68899998 5433 3333568999998542 222222 267889999999963 33443 24456899998873
Q ss_pred CcEEEeee----CCcceEEEEEccCCCCEEEEeeC-----------CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCC
Q 013475 222 GIETQSFR----EELAVRVVKFHPENSNLFLSGGS-----------KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 222 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (442)
...-..+. ....-..+.|++.|..+|+..+. +.+++++++........+. ..++|.++.|++++
T Consensus 204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSG 282 (566)
T ss_pred ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCC
Confidence 32221111 22233457888887666665543 2368888887333333333 45899999999999
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccce
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~ 363 (442)
+.|+++.... -..+.|||++..- +. ....+.-.++.|+|.|.+++.++-+ |.+.+||..+...+..+.
T Consensus 283 ~EF~VvyGfM-----PAkvtifnlr~~~-v~---df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 283 REFAVVYGFM-----PAKVTIFNLRGKP-VF---DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred CEEEEEEecc-----cceEEEEcCCCCE-eE---eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 8887765422 6789999998542 22 2233456789999999999886654 789999998855443222
Q ss_pred eEeecccccCcEEEEEccCCCEEEEecC------CCcEEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 364 RYESHGVSGFPIKCSFSLDGEKLVSGSS------DGSIYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 364 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
. ...+-+.|+|||.+|+++.. |+.++||++. |..+....- ......+.|-|-
T Consensus 354 ---a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 354 ---A----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred ---c----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh-hHhHhheeeeec
Confidence 1 22456899999999998864 7889999975 555443221 225677777754
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=2.7e-10 Score=105.16 Aligned_cols=254 Identities=14% Similarity=0.061 Sum_probs=161.9
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEE-
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRV- 236 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~- 236 (442)
+..++.++.+|.+..+|..++ +.+..... ...+.+.-.. .+..++.++.++.|..||.++|+.+..+........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDG--KELWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCC--cEeeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 456778888999999998555 44444332 1222211111 345677778899999999999998887764332211
Q ss_pred -----EEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC----C------E-eEEEEeeCCCEEEeccCCCCCcC
Q 013475 237 -----VKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG----P------I-LDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 237 -----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------i-~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
..+. + ..++.+..+|.+..+|.++++.+........ . + ....+ .+..++.++.
T Consensus 181 ~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~------ 249 (377)
T TIGR03300 181 RGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY------ 249 (377)
T ss_pred cCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc------
Confidence 1121 2 3677788889999999999987655431100 0 1 01111 2446666666
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
++.+..||..+++.+....... .. .....+..+++++.++.+..+|..++..++....+... .......
T Consensus 250 -~g~l~a~d~~tG~~~W~~~~~~---~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~----~~ssp~i- 318 (377)
T TIGR03300 250 -QGRVAALDLRSGRVLWKRDASS---YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR----QLTAPAV- 318 (377)
T ss_pred -CCEEEEEECCCCcEEEeeccCC---cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC----ccccCEE-
Confidence 8999999999887655443211 11 11234677888889999999999887665443222111 1111122
Q ss_pred cCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeE-EEEcCCCCCEEEEeeCCCcEEEc
Q 013475 381 LDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACID-VAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.+.+|++++.+|.|+++|..+++.+.+++.+...+.. ..+. ++ .|+.++.||.|+.|
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 4678999999999999999999999988876654333 2333 33 47777889999875
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=7.7e-11 Score=96.79 Aligned_cols=247 Identities=17% Similarity=0.129 Sum_probs=161.1
Q ss_pred cccceEEEEeeC--CCCC-EEEEecCCCcEEEEEcccCCcceeeeeccC---C---CceeEEEeCCCCCEEEEEecCCcE
Q 013475 144 HTKAVNSINWSP--THAH-LLASAGMDQSICIWNVWSRDQKLARVLNFH---S---AAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 144 h~~~V~~~~~s~--~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h---~---~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
-++.++.+.|.- .+|. .|+-+..+|.|.++..... .....+.+- . ....++.|++.+..++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcE
Confidence 346677788864 2344 5667778899999987432 222222221 1 124578899989899999999999
Q ss_pred EEEECCCCcEEE--eee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-CCceEEE-eccCCCCEeEEEEee-CCCE
Q 013475 215 RLVDVEKGIETQ--SFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKVAHE-YIQSLGPILDVEFTI-NGKQ 288 (442)
Q Consensus 215 ~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~i~~~~~~~-~~~~ 288 (442)
.+-+........ ..+ |+.+++...|+..+.+++++|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 977666554433 555 888999999998888999999999999999999 3344433 466888999998876 5789
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCC-CcccceeeccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
+++|+. |..|++||.++ ++++.... ..+.+..+.++|.-. .+++++.-+-.++.+..............
T Consensus 226 I~TGsY-------De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s 296 (339)
T KOG0280|consen 226 IATGSY-------DECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPS 296 (339)
T ss_pred EEEecc-------ccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeec
Confidence 999998 99999999995 44443332 236788899998654 33334444455555555443321111111
Q ss_pred ecccccCcEEEEEccCCCEEEEec-CCCcEE-EEecC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGS-SDGSIY-FYNCR 401 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~-iwd~~ 401 (442)
...+..-+..-.|.....+|++++ .|..++ +|-.-
T Consensus 297 ~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 297 DKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred cccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 222233344445544445677764 355544 55433
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=7.2e-12 Score=114.98 Aligned_cols=283 Identities=11% Similarity=0.149 Sum_probs=189.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC---CCEEEEEecCCcEEEEECCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ---GLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~v~vwd~~~ 221 (442)
.+.+.++..+|. |+-++.++.-| +.+-|+...-........-..-.|-.+.|++. ...+++.+ ...-.+|++..
T Consensus 24 ~~~~~a~si~p~-grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPS-GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccc-cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhc
Confidence 467889999999 77788888765 55667765533333322222235677888874 23444444 55567898754
Q ss_pred C--cEE--EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-eEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 222 G--IET--QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-VAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 222 ~--~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
. +.+ ....|...|+.+.|++....++++++.|-.+..||+++.. .+..+..-......+.|+...-.+++.+.
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh-- 178 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH-- 178 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc--
Confidence 2 222 2233888999999999999999999999999999999754 45555444456678899875555555555
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC-CCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF-DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
.+.|.+||++.+.........+-..+..+.|... ...+...+.|++|+.|+............ .....+.
T Consensus 179 -----g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v----tt~~piw 249 (1081)
T KOG0309|consen 179 -----GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV----TTNFPIW 249 (1081)
T ss_pred -----CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec----cccCcce
Confidence 7899999999877655554455556666666543 34677789999999999887654332211 1123355
Q ss_pred EEEEcc--CCCEEEEecCCCcEEEEe---------cCC-ceeeEeeeccCCceeEEEEcCCC---------CCEEEEeeC
Q 013475 376 KCSFSL--DGEKLVSGSSDGSIYFYN---------CRS-SELERKIKAYEQACIDVAFHPIL---------PNIIGSCSW 434 (442)
Q Consensus 376 ~~~~s~--~g~~l~~g~~dg~i~iwd---------~~~-~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~s~~~ 434 (442)
.-.+-| +|.++.---.+..+.+++ ..+ .+.+++|.+|.+.|..+.|-..+ ...|+|-+.
T Consensus 250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 556666 333333222233444443 333 36789999999999887775432 257999999
Q ss_pred CCcEEEc
Q 013475 435 NGDVSVY 441 (442)
Q Consensus 435 dg~i~iw 441 (442)
|..+++|
T Consensus 330 D~~lrlW 336 (1081)
T KOG0309|consen 330 DQTLRLW 336 (1081)
T ss_pred CCceEee
Confidence 9999999
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.38 E-value=1.3e-09 Score=109.47 Aligned_cols=284 Identities=12% Similarity=0.139 Sum_probs=183.0
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEE----EcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEEC
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIW----NVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~ 219 (442)
..+.|.++.|.++ ...++.+..+|.|.+. +..+. .......-...|.+++||||+..|+....+++|.+-+-
T Consensus 74 ~~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~~~~---~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLAD-SESLCIALASGDIILVREDPDPDED---EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccC-CCcEEEEECCceEEEEEccCCCCCc---eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 4578999999999 7778888889999999 54333 33333335689999999999999999998988887542
Q ss_pred C---------------C--------CcEEEeee-------------------------CCcceEEEEEccCCCCEEEEee
Q 013475 220 E---------------K--------GIETQSFR-------------------------EELAVRVVKFHPENSNLFLSGG 251 (442)
Q Consensus 220 ~---------------~--------~~~~~~~~-------------------------~~~~v~~~~~~~~~~~~l~~~~ 251 (442)
+ . |+...+|+ ....-..++|-.|| .+|++.+
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-~yFAVss 228 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG-EYFAVSS 228 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC-cEEEEEE
Confidence 1 0 11111111 12234568899997 7777765
Q ss_pred C---C---CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec---c
Q 013475 252 S---K---GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY---V 322 (442)
Q Consensus 252 ~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~ 322 (442)
. . ..|+||+- .|....+-..-.+--.+++|.|.|+++++..... ....|.+|.-+. .....+.. .
T Consensus 229 ~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~----~~~~VvFfErNG-LrhgeF~l~~~~ 302 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLP----DRHDVVFFERNG-LRHGEFTLRFDP 302 (928)
T ss_pred EEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcC----CCcEEEEEecCC-cEeeeEecCCCC
Confidence 4 2 47999985 4665444433334446789999999999887421 135666676443 22222222 3
Q ss_pred ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC-CCEEEEecCCCcEEEEecC
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~ 401 (442)
....+..+.|+.++..|++...+. |.+|...+-.-..+ ..+. ......+..+.|+|. ...|...+.+|.+..+++.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK-qei~-~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK-QEIR-FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE-EEEE-ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 456789999999999999977555 99998776432211 1111 111223445889984 4556666666666655432
Q ss_pred ----Cc--------eeeEeee-----------------------ccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 402 ----SS--------ELERKIK-----------------------AYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 402 ----~~--------~~~~~~~-----------------------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+ -.+..+. .....|.+++|++++ ..+++-..||.|.+|+
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEE
Confidence 11 0011111 124689999999998 5688888999998874
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=5.3e-10 Score=103.24 Aligned_cols=258 Identities=16% Similarity=0.079 Sum_probs=162.0
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVV 237 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~ 237 (442)
+..++.++.+|.|..+|..++ +.+............... ++..++.++.++.+..+|..+|+.+........+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 456788888999999998555 444444322221122222 4667888888999999999999998877754444332
Q ss_pred EEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE-----eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 238 KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI-----LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
-... + ..++.+..+|.|+.||.++++.+.++......+ .+.... + ..++.+.. ++.+..+|.++
T Consensus 141 p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~-------~g~v~ald~~t 209 (377)
T TIGR03300 141 PLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFA-------GGKLVALDLQT 209 (377)
T ss_pred CEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECC-------CCEEEEEEccC
Confidence 2222 2 456777889999999999999887765432211 111121 3 35666665 89999999998
Q ss_pred Ccccceeeccccc---e---eeeEEecC--CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC
Q 013475 313 EVPLSKQVYVEAY---T---CPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE 384 (442)
Q Consensus 313 ~~~~~~~~~~~~~---~---~~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 384 (442)
++.+......... . ...+.-+| .+..+++++.++.++.+|..++...+.... . . .. ....++.
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~--~-~~--~p~~~~~ 280 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----S--S-YQ--GPAVDDN 280 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----C--C-cc--CceEeCC
Confidence 8765443221110 0 00000111 356778888899999999988765543321 0 1 11 1223567
Q ss_pred EEEEecCCCcEEEEecCCceeeEeeeccCC-ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 385 KLVSGSSDGSIYFYNCRSSELERKIKAYEQ-ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 385 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|++++.+|.|+.+|..+++.+........ ....... .+ ..|++++.||.|++||
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEE
Confidence 888889999999999999987765532222 2222222 23 4778888899998875
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-09 Score=100.38 Aligned_cols=211 Identities=14% Similarity=0.098 Sum_probs=135.1
Q ss_pred ceeEEEeCCCCCE-EEEEecC---CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCC--CcEEEEECCCCc
Q 013475 192 AVNDVKWSQQGLF-VLSCGYD---CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK--GLLRLWDIRTGK 265 (442)
Q Consensus 192 ~v~~l~~~~~~~~-l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~ 265 (442)
.+....|+|||+. ++..+.+ ..|.++|+.+++........+......|+|||..++++.+.+ ..|+++|+.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7788999999985 5544443 569999999987776666666677788999986676666544 468888987775
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
. ..+..+........|+|||+.|+..+... ....|.++|+.++.... +..... ....|+|+|++++.....
T Consensus 269 ~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~r-lt~~g~---~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 269 L-TQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQ-VVFHGK---NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred E-EEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEe-CccCCC---cCceECCCCCEEEEEEcC
Confidence 4 44444433344568999999888877411 12378888887765422 222111 124899999998876543
Q ss_pred ---------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC---CcEEEEecCCceeeEeeeccC
Q 013475 346 ---------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD---GSIYFYNCRSSELERKIKAYE 413 (442)
Q Consensus 346 ---------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~ 413 (442)
..|.+.++.++... .+... .......|+|||+.|+....+ ..|.+.++.. .....+....
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~----~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~ 411 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIR----RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKV 411 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeE----ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCC
Confidence 36888888766432 11111 112357899999988765533 2366777754 3334444334
Q ss_pred CceeEE
Q 013475 414 QACIDV 419 (442)
Q Consensus 414 ~~v~~~ 419 (442)
+.+...
T Consensus 412 g~~~~p 417 (419)
T PRK04043 412 GKIQSI 417 (419)
T ss_pred CccCCC
Confidence 444433
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=6.8e-12 Score=125.46 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=152.4
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
++.|-..|.++.=+|. ..+.+||+.||.|++|....+.........+. ..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 3445677888888898 77888999999999999854433333333334 899999999999999999999999999988
Q ss_pred CCcEEEeee-CCcceEEEEEccCCCCEEEEee---CCCcEEEEECCCC---ceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 221 KGIETQSFR-EELAVRVVKFHPENSNLFLSGG---SKGLLRLWDIRTG---KVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 221 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
. +.....+ |....+.+.|.. .++++++ .++.+.+||.... ..+. ..|.+.++++++-|..+.|++|+
T Consensus 2282 p-k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2282 P-KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC
Confidence 3 3444444 788888888874 4566654 4678999997532 2333 78999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
. +|.|++||++..+...++.. ++ ...+|+.++..|.++||++.....+..
T Consensus 2356 r-------~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2356 R-------KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred C-------cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 8 99999999998776655433 33 567899999999999999988755543
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=3.6e-10 Score=104.70 Aligned_cols=210 Identities=17% Similarity=0.189 Sum_probs=145.6
Q ss_pred CCcceecccccccceEEEEeeCCC-----------CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTH-----------AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-- 200 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-- 200 (442)
..+.++++.-|+..|+.+.|.|-. .-+||++...|.|.|||+... ..+..+..|..+|..++|.+
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhhhhhcCCCcchhheeeeecc
Confidence 467788889999999999998741 236788888999999999543 66667788899999999987
Q ss_pred -CC-CEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-------CceEEEe
Q 013475 201 -QG-LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-------GKVAHEY 270 (442)
Q Consensus 201 -~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~ 270 (442)
+. ..|++-....+|.+|+..+|+...++. ......|+.+.|-+...|..-+..|.+.+-+.-. ++..+.-
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 466666778899999999999998888 4556677999997777777777777777766531 2222222
Q ss_pred ccCCC------------C-------------EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccc
Q 013475 271 IQSLG------------P-------------ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAY 325 (442)
Q Consensus 271 ~~~~~------------~-------------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 325 (442)
..|.. . ...++|+|.-+.++.... ...+.++|++-...+....... .
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-------prellv~dle~~~~l~vvpier-~ 273 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-------PRELLVFDLEYECCLAVVPIER-G 273 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-------ccceEEEcchhhceeEEEEecc-C
Confidence 22211 0 112456775554444444 7899999998776665544332 2
Q ss_pred eeeeEEecC--CCCeeEEEeCCCeEEEeeC
Q 013475 326 TCPCVRHHP--FDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 326 ~~~~~~~~~--~~~~l~~~~~~~~i~i~~~ 353 (442)
.+.-+.+-| ....+++...+|.+.+|-.
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 333344444 4457888888888888853
No 277
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.4e-10 Score=110.67 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=152.6
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCce-----eEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAV-----NDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
+.|....+.-+ .+.++.++.++.+.+||.... .....+. +...+ .-+-++++.-++++|+.-+.|.+|+..
T Consensus 88 ~wi~g~~l~~e-~k~i~l~~~~ns~~i~d~~~~--~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 88 DWIFGAKLFEE-NKKIALVTSRNSLLIRDSKNS--SVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred ccccccchhhh-cceEEEEEcCceEEEEecccC--ceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 44444555556 667888888899999998433 4444343 33222 223356677789999999999999987
Q ss_pred CC-cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE-EeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 221 KG-IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH-EYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 221 ~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
.. .......|++.+..+.|+-+| .++++.++|.++++|++.+.+... ..-+|...|..++|.++ .+++++.
T Consensus 164 ~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge---- 236 (967)
T KOG0974|consen 164 EDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE---- 236 (967)
T ss_pred ccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc----
Confidence 43 333344599999999999996 999999999999999999987765 66789999999999988 8999998
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 356 (442)
|-+.++|+.... .+..+..+....+..+...+.....++++.|+.+++|++...
T Consensus 237 ---dctcrvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 237 ---DCTCRVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---ceEEEEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999976543 344555556678899999999999999999999999998764
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=2.6e-09 Score=93.74 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=135.3
Q ss_pred eeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC-cEEEEECCCCcEEEeeeCC
Q 013475 153 WSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC-SSRLVDVEKGIETQSFREE 231 (442)
Q Consensus 153 ~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~ 231 (442)
|++-+|.+++..|. |...|.+... .....+ +|...|.-..+.-+++-++.|..|| .+-|+|.++++..+....-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~---~~~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWD---GYSIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCC---CeeEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc
Confidence 44445888888875 6777777522 223333 3778899999988888999999999 8999999999887777788
Q ss_pred cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 232 LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 232 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
+.|.++..+++| +.++++.....|.+.|+.+++....-+...+-|+.+.|+|++++++.+-. .+.....|+++|+.
T Consensus 402 g~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP---~gy~tq~Iklydm~ 477 (668)
T COG4946 402 GNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP---EGYYTQSIKLYDMD 477 (668)
T ss_pred cceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecC---cceeeeeEEEEecC
Confidence 999999999997 88888888889999999999875555566678999999999999998875 11124579999999
Q ss_pred CCcccceeeccccceeeeEEecCCCCeeEEE
Q 013475 312 REVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (442)
.++...... ....-.+-+|.|++++|..-
T Consensus 478 ~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 478 GGKIYDVTT--PTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CCeEEEecC--CcccccCcccCCCCcEEEEE
Confidence 876443221 11223446788888876653
No 279
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.8e-11 Score=101.97 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=184.9
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEccc-CCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEEECCC
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS-RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEK 221 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~ 221 (442)
|++.|+.+.-.. .+++.+++.||.++.|.-.. ...+.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 888888887665 47899999999999998533 234556667779999999999999999999887 99999999998
Q ss_pred CcEEEeeeCCcceEEEEEccCCC----CEEEEeeCCCcEEEEECCCCc--eEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 222 GIETQSFREELAVRVVKFHPENS----NLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
-..+.-++...-...+.|....+ .+.++.-.++.+.++|-.... ....-..|..+|..+.+++-++.+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~- 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI- 164 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc-
Confidence 77665555333333333332211 233334567899999976543 33444568899999999999999999987
Q ss_pred CCCcCCCCeEEEEeCCCCc------cccee--------eccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 296 SGSNMSENSIVVWDVSREV------PLSKQ--------VYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
.|.|..|.....- ..... .........++.|+|++..+..-+.|..|+++...++.....
T Consensus 165 ------~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 165 ------SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ------cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 8999999987311 00000 112234578899999999999999999999999887655432
Q ss_pred ceeE-----------------------------eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee
Q 013475 362 FKRY-----------------------------ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 362 ~~~~-----------------------------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
+... ..+ ....-+.+.|...|++|+-|+-=| |+|.++.++++++.+-
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 2111 111 112234678999999999998877 9999999988776653
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=2.1e-09 Score=109.99 Aligned_cols=239 Identities=12% Similarity=0.060 Sum_probs=154.9
Q ss_pred eEEEeCCC-CCEEEEEecCCcEEEEECCCCcEEEeeeC---------------CcceEEEEEccCCCCEEEEeeCCCcEE
Q 013475 194 NDVKWSQQ-GLFVLSCGYDCSSRLVDVEKGIETQSFRE---------------ELAVRVVKFHPENSNLFLSGGSKGLLR 257 (442)
Q Consensus 194 ~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~~~~~dg~i~ 257 (442)
..++++++ +.++++-..++.|++||... ..+..+.. -.....+++.+++..++++-..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788764 55666666788899999864 44433331 123578999988633445555567899
Q ss_pred EEECCCCceEEEeccC-----------------CCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCccccee
Q 013475 258 LWDIRTGKVAHEYIQS-----------------LGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ 319 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 319 (442)
++|+.++. +.++.+. ...-..+++++ ++..+++... ++.|++||..++......
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCCCeEEEEe
Confidence 99987654 3333210 11235789999 5666666666 899999998775432110
Q ss_pred ec-------------cccceeeeEEecCCCCe-eEEEeCCCeEEEeeCCCCcccccc----------eeEeec------c
Q 013475 320 VY-------------VEAYTCPCVRHHPFDPY-FVAQSNGNYIAIFSSTPPFRLDKF----------KRYESH------G 369 (442)
Q Consensus 320 ~~-------------~~~~~~~~~~~~~~~~~-l~~~~~~~~i~i~~~~~~~~~~~~----------~~~~~~------~ 369 (442)
.. ........++++|++.. +++.+.++.|++||+.++...... ..+... .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 00 01123456899999884 455666799999998764321000 000000 0
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee-------------ccCCceeEEEEcCCCCCEEEEeeCCC
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK-------------AYEQACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
.-.....++++++|+++++-..++.|++||..++....... +.-....+++++++| +++++-+.++
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn 880 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNS 880 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCC
Confidence 11235688999999998998999999999998776543221 111256789999999 7888888999
Q ss_pred cEEEcC
Q 013475 437 DVSVYE 442 (442)
Q Consensus 437 ~i~iwd 442 (442)
.|++||
T Consensus 881 ~Irvid 886 (1057)
T PLN02919 881 LIRYLD 886 (1057)
T ss_pred EEEEEE
Confidence 999996
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-10 Score=96.54 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=170.7
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---cceeeeeccCC------------CceeEEEeCCCC--CEEE
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---QKLARVLNFHS------------AAVNDVKWSQQG--LFVL 206 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~------------~~v~~l~~~~~~--~~l~ 206 (442)
....|+++.|... |.||++|...|.|.+|.-+... .+....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4567999999999 9999999999999999854332 22333455553 458888887743 3566
Q ss_pred EEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC------CceEEEe-ccCCCCEeE
Q 013475 207 SCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT------GKVAHEY-IQSLGPILD 279 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~-~~~~~~i~~ 279 (442)
..+.|.+|++|.+.........+ ...+.---+|-++.+ .+. ..+++=.+.. .++.+.+ ..|.-.|++
T Consensus 104 lstNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~-~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPL-TST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred EecCCceeeeeeeecccchhhhc--cccccccccccCCCc-CCH---HHhhcccccccceEEEeccceeccccceeEeee
Confidence 66779999999987643221111 000000001111110 000 0011111100 0111122 457778999
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-------cceeeeEEecCCCC-eeEEEeCCCeEEEe
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-------AYTCPCVRHHPFDP-YFVAQSNGNYIAIF 351 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~l~~~~~~~~i~i~ 351 (442)
+.|+.|...++++. |-.|.+|++........+.... ..-|++..|+|... .+...+..|.|++-
T Consensus 178 iS~NsD~et~lSaD--------dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 178 ISFNSDKETLLSAD--------DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eeecCchheeeecc--------ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 99999999998887 7899999987643332222211 23477888999755 45557888999999
Q ss_pred eCCCCcccccceeE-----ee------cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc-eeeEeeeccC------
Q 013475 352 SSTPPFRLDKFKRY-----ES------HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS-ELERKIKAYE------ 413 (442)
Q Consensus 352 ~~~~~~~~~~~~~~-----~~------~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~------ 413 (442)
|++.......-..+ .+ ......|..+.|+++|+||++-+. .+|+|||++.. .++.++.-|.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHH
Confidence 99854322111110 00 011234678999999999998775 47999999764 5667765442
Q ss_pred ------Cce---eEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 414 ------QAC---IDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 414 ------~~v---~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
..| ..+.|+.+. ..+.+|+..+..-||
T Consensus 329 ~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiy 364 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIY 364 (460)
T ss_pred HhhhhccceeeeEEEEecCCc-ccccccccccceeee
Confidence 223 347788887 677888776655443
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=8.1e-09 Score=103.81 Aligned_cols=288 Identities=11% Similarity=0.074 Sum_probs=183.0
Q ss_pred cceEEEEeeCCCCCEEEE-ecCCC--cEEEEEcccCC-cceeeeec-----cCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 146 KAVNSINWSPTHAHLLAS-AGMDQ--SICIWNVWSRD-QKLARVLN-----FHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s-~~~dg--~i~iwd~~~~~-~~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
..+...+|.......++. +.... .|.+....... ...+..+. .....|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356777887773443333 33222 23443332221 12233332 24578999999999999999999999999
Q ss_pred E----ECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE------------------------E
Q 013475 217 V----DVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA------------------------H 268 (442)
Q Consensus 217 w----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------~ 268 (442)
. +..+......-..+..|.+++|+||+ .+|+..+.+++|.+.+- +...+ .
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccC
Confidence 9 66555444444468899999999996 77777777888777542 11111 0
Q ss_pred Eecc------------------------CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc
Q 013475 269 EYIQ------------------------SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA 324 (442)
Q Consensus 269 ~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 324 (442)
.|.+ ....-..|+|-.||.+|++.+.....+ .-..++||+-+ +. +........
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~-~~R~iRVy~Re-G~-L~stSE~v~ 256 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG-SRRVIRVYSRE-GE-LQSTSEPVD 256 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC-ceeEEEEECCC-ce-EEeccccCC
Confidence 1100 112345788999999999887411111 13689999976 33 223223334
Q ss_pred ceeeeEEecCCCCeeEEEeC---CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 325 YTCPCVRHHPFDPYFVAQSN---GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+--.+++|-|.|.++++... ...|.+|.-++...-. +. +........+..+.|+.|+..||....|. |.+|-..
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge-F~-l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE-FT-LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee-Ee-cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 45567999999999998654 4567777766543321 11 11112335678999999999999987665 9999987
Q ss_pred Cce--eeEeeecc-CCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 402 SSE--LERKIKAY-EQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 402 ~~~--~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+.. +.+++... ...+..+.|+|..+..|.....+|.+..+
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 753 33344322 33455699999887778888776777654
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=8.4e-09 Score=90.59 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=120.6
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCC-cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQ-SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
+|.+.|.-..+.-+ ++-++.|..|| .+-|+|..++ ..+.+...-+.|.++..+++|++++.+.....|.+.|+++
T Consensus 357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 67888999999888 66788999999 9999997443 4445555778999999999999999999999999999999
Q ss_pred CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCC----cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 222 GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKG----LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 222 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
+.....-+ ..+-|+.+.|||++ .+|+-+--+| .|+++|+..++...... ..+.=.+-+|.||+++|..-+...
T Consensus 433 gnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred CCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEeccc
Confidence 97655444 57789999999985 8888765554 69999998877654332 223334567889999887766533
Q ss_pred CCcCCCCeEEEE
Q 013475 297 GSNMSENSIVVW 308 (442)
Q Consensus 297 ~~~~~d~~i~iw 308 (442)
...+.|..+.-+
T Consensus 511 LdPs~Drv~fnf 522 (668)
T COG4946 511 LDPSNDRVIFNF 522 (668)
T ss_pred cCCCCCeeEEEE
Confidence 333445544433
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.28 E-value=9e-09 Score=85.07 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=145.7
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec---cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN---FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 226 (442)
.++.+.+ |++||.-- |..|.|-..+++-...+.... ...-.-+.++|+||+.+||.+...|+|+++|+.... +.
T Consensus 2 ~~~~~~~-Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 2 HLALSSD-GKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred ceeecCC-CcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 3566777 88887764 678888776544333333322 223345789999999999999999999999997643 22
Q ss_pred eee--------CCcceEEEEEccCC-----CCEEEEeeCCCcEEEEECCC-----CceEEEecc---CCCCEeEEEEeeC
Q 013475 227 SFR--------EELAVRVVKFHPEN-----SNLFLSGGSKGLLRLWDIRT-----GKVAHEYIQ---SLGPILDVEFTIN 285 (442)
Q Consensus 227 ~~~--------~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~---~~~~i~~~~~~~~ 285 (442)
.+. ....|..+.|.... ...|++-..+|.++-|-+.. .+..+.+.. ....|.++.|+|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 332 23456777775432 23566677788888776532 233344332 3568999999999
Q ss_pred CCEEEeccCCCCCc----CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 286 GKQFVSSSDVSGSN----MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 286 ~~~l~~~~~~~~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
.+.|++++...... ..+..+.-|.+-++.+..+........+ -......+ ++.+-+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~-----------~~~~~~~~---~~~~~~------ 218 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI-----------TASSKRRG---LLRIPS------ 218 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc-----------cccccccc---eeeccc------
Confidence 99988887632210 1122455666555443332221111111 00000111 111111
Q ss_pred ceeEee-cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc
Q 013475 362 FKRYES-HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY 412 (442)
Q Consensus 362 ~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 412 (442)
++.+.. ......|..|..||||+.|++...+|.|.+|++.+-++...+..+
T Consensus 219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 111111 123356889999999999999999999999999988777766544
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=9.9e-10 Score=100.97 Aligned_cols=246 Identities=12% Similarity=0.134 Sum_probs=165.3
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
-..-++|.||++.|.-+.|+.+ .+.|-|...+|.|.||-+..+.......-....+-|.+++|+.||..++..-.||.|
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred cchhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 3455789999999999999998 778999999999999999777654444444466789999999999999999999999
Q ss_pred EEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-------ceEEE----eccCCCCEeEEEEe
Q 013475 215 RLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-------KVAHE----YIQSLGPILDVEFT 283 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~----~~~~~~~i~~~~~~ 283 (442)
.|=.++.++...+--.......+.|++|. ..++.+-.+|.+.+||.... .+... +......|..+.|.
T Consensus 140 IVGsvdGNRIwgKeLkg~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKGQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEEeeccceecchhcchheccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 98888765433222123345578999985 77777888899999997532 11111 11122246666664
Q ss_pred --------eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC---------C
Q 013475 284 --------INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---------N 346 (442)
Q Consensus 284 --------~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~ 346 (442)
|+.-.|+.+.. +|.+.|..-.+.... ........+....|+++|..+++++.+ +
T Consensus 219 ~g~~~~v~pdrP~lavcy~-------nGr~QiMR~eND~~P--vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYA-------NGRMQIMRSENDPEP--VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred cCccccCCCCCCEEEEEEc-------CceehhhhhcCCCCC--eEEecccEeecceecCCCcEEEEccCcccccCccccc
Confidence 46678888887 888887654443222 222333578889999999999997764 3
Q ss_pred eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEE
Q 013475 347 YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFY 398 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iw 398 (442)
.|.+|..-+.. +..++.. ..-|+.++|-..|-.++.+- |+.|++=
T Consensus 290 ~v~Fysp~G~i----~gtlkvp--g~~It~lsWEg~gLriA~Av-dsfiyfa 334 (1189)
T KOG2041|consen 290 KVHFYSPYGHI----VGTLKVP--GSCITGLSWEGTGLRIAIAV-DSFIYFA 334 (1189)
T ss_pred eEEEeccchhh----eEEEecC--CceeeeeEEcCCceEEEEEe-cceEEEE
Confidence 45555543321 1222222 23467777766665544432 3444443
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.24 E-value=3.6e-08 Score=85.14 Aligned_cols=229 Identities=18% Similarity=0.121 Sum_probs=147.4
Q ss_pred EEEeCC-CCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEc-cCCCCEEEEeeCCCcEEEEECCCCceEEEecc
Q 013475 195 DVKWSQ-QGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFH-PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ 272 (442)
Q Consensus 195 ~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 272 (442)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+++. ++ ..|+.+... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~--g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD--GRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT--SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC--CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578887 66666666568999999998875543 33333 7778888 55 344555554 456669988854333322
Q ss_pred -----CCCCEeEEEEeeCCCEEEeccCCCCCcCC-CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE-EEeCC
Q 013475 273 -----SLGPILDVEFTINGKQFVSSSDVSGSNMS-ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV-AQSNG 345 (442)
Q Consensus 273 -----~~~~i~~~~~~~~~~~l~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 345 (442)
.....+++++.++|++.++.......... .+.|..++.. ++ +... ...-.....++|+|+++.|+ +-+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVV-ADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEE-EEEESSEEEEEEETTSSEEEEEETTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEE-ecCcccccceEECCcchheeeccccc
Confidence 34577899999999977776541111000 1567777777 33 2222 22234567899999998765 56778
Q ss_pred CeEEEeeCCCCcc-cccceeEee-cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc-
Q 013475 346 NYIAIFSSTPPFR-LDKFKRYES-HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH- 422 (442)
Q Consensus 346 ~~i~i~~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~- 422 (442)
+.|..|++..... +.....+.. ....+.+-.+++..+|++.++....+.|.++|.+ |+.+..+......+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8999999864433 222222211 1212346789999999988888888999999977 88888887665689999994
Q ss_pred CCCCCEEEEe
Q 013475 423 PILPNIIGSC 432 (442)
Q Consensus 423 p~~~~~l~s~ 432 (442)
++...+++|.
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 5654566654
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.3e-08 Score=94.09 Aligned_cols=218 Identities=8% Similarity=0.011 Sum_probs=132.2
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCC-EEEEecC---CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCC
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAH-LLASAGM---DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 203 (442)
.......+...+.+.... .+....|+|| |+ .++..+. +..|.++|+.++....+.. ..+......|+|||+
T Consensus 171 l~~~d~dg~~~~~~~~~~-~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 171 IVLADYTLTYQKVIVKGG-LNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGS 245 (419)
T ss_pred EEEECCCCCceeEEccCC-CeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCC
Confidence 333444555445444443 7788999999 65 3554333 3568888886554333332 345566788999998
Q ss_pred EEEEEec---CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEe
Q 013475 204 FVLSCGY---DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPIL 278 (442)
Q Consensus 204 ~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~ 278 (442)
.|+.... +..|.++|+.+++......+........|+|||..++++....+ .|+++|+.+++..+..... . .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--N 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--c
Confidence 7765432 35688889888875544334443456689999866666665544 5888888877653332211 1 1
Q ss_pred EEEEeeCCCEEEeccCCCCCcC--CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC---CeEEEeeC
Q 013475 279 DVEFTINGKQFVSSSDVSGSNM--SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSS 353 (442)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~ 353 (442)
...|+|||++++.......... ....|.+.|+.++... .+... .......|+|+|+.++..... ..+.++++
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 2489999999987765110000 0147888898776532 22221 233468899999988775532 23555565
Q ss_pred CCC
Q 013475 354 TPP 356 (442)
Q Consensus 354 ~~~ 356 (442)
+..
T Consensus 400 ~g~ 402 (419)
T PRK04043 400 NYN 402 (419)
T ss_pred CCC
Confidence 543
No 288
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1e-09 Score=94.17 Aligned_cols=253 Identities=12% Similarity=0.166 Sum_probs=156.5
Q ss_pred CCcceeeeeccCCCceeEEEeCCCCC-EEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 178 RDQKLARVLNFHSAAVNDVKWSQQGL-FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 178 ~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
.+.+....+.+|...|.+++|+|..+ ++..++.+..|+|.|+++..++..+.....+++++|.-++.++|+.|..+|.|
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceE
Confidence 33444556777889999999999766 78889999999999999999999988779999999999988999999999999
Q ss_pred EEEECCCCc-eEEEecc--CCCCEeEEEEee------CCCEEEeccCCCCCcCCCCeEEEEeCCCCc--ccceeeccccc
Q 013475 257 RLWDIRTGK-VAHEYIQ--SLGPILDVEFTI------NGKQFVSSSDVSGSNMSENSIVVWDVSREV--PLSKQVYVEAY 325 (442)
Q Consensus 257 ~iwd~~~~~-~~~~~~~--~~~~i~~~~~~~------~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 325 (442)
.+||++..+ .+..+.. ...+|..++.-+ .|..++... -.+..|++.... ..........+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l---------t~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL---------TVLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee---------hhhhhhhhhccccCCCcccccCCCc
Confidence 999998653 2222222 234555544332 333333333 245566665422 22223333345
Q ss_pred eeeeEEecCCCCeeEEEeCCC-------eEEE-eeCCCCcccccceeEe-eccc-ccCcEEEEE-ccCCCEEE-EecCCC
Q 013475 326 TCPCVRHHPFDPYFVAQSNGN-------YIAI-FSSTPPFRLDKFKRYE-SHGV-SGFPIKCSF-SLDGEKLV-SGSSDG 393 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~-------~i~i-~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~-s~~g~~l~-~g~~dg 393 (442)
.+.++..++..+.+++....+ .+.. .|..++..+...+... +... ...-+...+ .++.++|+ +|+..+
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 666777777666666544331 1111 1111221111100000 0000 000011122 33445555 566678
Q ss_pred cEEEEecCCceeeEeeeccCCceeEEEEcC-CCCCEEEEeeCCCcEEEc
Q 013475 394 SIYFYNCRSSELERKIKAYEQACIDVAFHP-ILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 394 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iw 441 (442)
.+.+||..+++.++++.- ..+|.++.... +++.+|+.-. |..++||
T Consensus 412 ~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred eeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEE
Confidence 899999999999999875 57888887654 4446777765 5567665
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.21 E-value=4.3e-08 Score=83.66 Aligned_cols=240 Identities=13% Similarity=0.072 Sum_probs=162.7
Q ss_pred ceeEEEeCC-CCCEEEEEecCC-cEEEEECCCCcEEEeeeCCc---ceEEEEEccCCCCEEEEeeC-----CCcEEEEEC
Q 013475 192 AVNDVKWSQ-QGLFVLSCGYDC-SSRLVDVEKGIETQSFREEL---AVRVVKFHPENSNLFLSGGS-----KGLLRLWDI 261 (442)
Q Consensus 192 ~v~~l~~~~-~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~ 261 (442)
....++.+| +...++.+-.-| ...+||..+++....+.... -.-.-.|++|| .+|++.-+ .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEEC
Confidence 445788888 556666666655 46899999999888776222 22357899997 66666533 478999999
Q ss_pred C-CCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc-----------CCCCeEEEEeCCCCcccceeec---cccce
Q 013475 262 R-TGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN-----------MSENSIVVWDVSREVPLSKQVY---VEAYT 326 (442)
Q Consensus 262 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~-----------~~d~~i~iwd~~~~~~~~~~~~---~~~~~ 326 (442)
. ..+.+.++..+.-.-..+.+.|||+.|+++-.-+..- ..+-.+.+.|..+++.+.+... .+...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 5677888887766678899999998877764321111 1244666777788877766443 35567
Q ss_pred eeeEEecCCCCeeEEEeCC-------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEEE
Q 013475 327 CPCVRHHPFDPYFVAQSNG-------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYFY 398 (442)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iw 398 (442)
+..+++..+|..++..-.. -.+.+++............-.......++-+++++.+|.++++.+ ..|.+.+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999998877764332 234555544432221111111223447788999999998886555 57789999
Q ss_pred ecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCC
Q 013475 399 NCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 399 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
|..+++.+....- ..+..++-.+++ +++|.+...
T Consensus 245 d~~tg~~~~~~~l--~D~cGva~~~~~--f~~ssG~G~ 278 (305)
T PF07433_consen 245 DAATGRLLGSVPL--PDACGVAPTDDG--FLVSSGQGQ 278 (305)
T ss_pred ECCCCCEeecccc--CceeeeeecCCc--eEEeCCCcc
Confidence 9999998877653 347777777775 677666443
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.3e-09 Score=99.51 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=164.4
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC------------CEEEEEecCCc
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG------------LFVLSCGYDCS 213 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~l~s~~~d~~ 213 (442)
..-.++.|+|. | ++|-|+. ..|.|-|. ...+.++.+..|...|+.+.|.|-. -.|+++...|.
T Consensus 16 sN~~A~Dw~~~-G-LiAygsh-slV~VVDs--~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPS-G-LIAYGSH-SLVSVVDS--RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCcc-c-eEEEecC-ceEEEEeh--hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34678899998 5 6777775 47888887 5568888899999999999998721 24666777899
Q ss_pred EEEEECCCCcEEEeee-CCcceEEEEEccC---CCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCE
Q 013475 214 SRLVDVEKGIETQSFR-EELAVRVVKFHPE---NSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQ 288 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 288 (442)
|.+||...+..+..+. +...+..++|-+. ...+|++-.....|.+|+..+|+...++........|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 9999999998888888 6778888988653 225667767778999999999999888776667777788877 3344
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCc------ccceeecccc-------------------------ceeeeEEecCCCC
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREV------PLSKQVYVEA-------------------------YTCPCVRHHPFDP 337 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 337 (442)
|...+. .|.+.+-+.-... ...++...+. ..+..++|+|.-+
T Consensus 171 ~~~l~s-------~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 171 FCVLGS-------KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred EEEEcc-------CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 433333 4555554432110 0000000000 0133466788888
Q ss_pred eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC--CCEEEEecCCCcEEEEecCC
Q 013475 338 YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD--GEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~iwd~~~ 402 (442)
.++...-...+.++|++-...+..+.. .. +.+.-+.+-|+ ...|++...||.+.||-.+.
T Consensus 244 n~lfi~~prellv~dle~~~~l~vvpi---er--~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 244 NILFITFPRELLVFDLEYECCLAVVPI---ER--GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEEeccceEEEcchhhceeEEEEe---cc--CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 888888889999999886655433221 11 22334555554 46899999999999997553
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.7e-11 Score=106.99 Aligned_cols=199 Identities=16% Similarity=0.243 Sum_probs=141.5
Q ss_pred CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-------CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 230 EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-------GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 230 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
|...|..+.-..+ .+-|++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++++ |
T Consensus 734 H~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc---------D 803 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC---------D 803 (1034)
T ss_pred cHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec---------c
Confidence 5666666655554 57899999999999999874 23667889999999999999998888876 7
Q ss_pred CeEEEEeCCCCcccceeecc-ccceeeeEEecC--CCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEE
Q 013475 303 NSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHP--FDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCS 378 (442)
Q Consensus 303 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 378 (442)
+.|.+||.--+..+.+.... ..+....+..-+ +...+++ ++...+++++|.+.......++..........+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 89999998777666543322 222233333333 3334444 4778899999999877666556555555556788999
Q ss_pred EccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 379 FSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 379 ~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
..+.|++++++-++|.|.+.|.++|+.+..+...+-....++--.| +.|+....|.++.|
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsd--q~L~~saldHslaV 943 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSD--QALAQSALDHSLAV 943 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchh--HHHHhhcccceeEe
Confidence 9999999999999999999999999988877654443333332222 34554445555544
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.15 E-value=5.8e-10 Score=90.19 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=108.1
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-----cCCc
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-----YDCS 213 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-----~d~~ 213 (442)
+.+..|++.-.+-+.+-. ++-++++..||.+.+++.+.. ......+..-...-.+.++...++.+.++. .-+.
T Consensus 83 ~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCccccccc-CCceEecCCCceEEEEechHH-HhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 344455554444444444 667999999999999997441 222222211111111222333444444432 1344
Q ss_pred EEEEECCCCcEEEe-eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEee-CCCEEE
Q 013475 214 SRLVDVEKGIETQS-FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTI-NGKQFV 290 (442)
Q Consensus 214 v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~ 290 (442)
.+.|+++..+.+.. .+....|++++-+|...+++++|+.||.+-+||.++... ...++.|..+|..+-|+| ++..|+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 66666654432222 223445999999998888999999999999999998743 445678999999999998 678899
Q ss_pred eccCCCCCcCCCCeEEEEeCCC
Q 013475 291 SSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
+++. ||.+..||..+
T Consensus 241 t~se-------dGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSE-------DGSLWHWDAST 255 (319)
T ss_pred EecC-------CCcEEEEcCCC
Confidence 9998 99999999875
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.15 E-value=3.9e-08 Score=91.18 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=156.2
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeE-EEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceE-
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVND-VKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVR- 235 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~- 235 (442)
+..++.++.+|.+..+|.+++ +.+...... ..+.+ ... .+..++.+..++.|..+|.++|+.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG--EVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC--CCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 345667788899999998655 444444322 22221 111 23467777789999999999999988876432211
Q ss_pred -----EEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-------CEeEEEEee--CCCEEEeccCCCCCcCC
Q 013475 236 -----VVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-------PILDVEFTI--NGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 236 -----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~~~~~~~~ 301 (442)
.-... + ..++.++.+|.+..+|..+++.+.+...... ....+..+| .+..++.++.
T Consensus 195 ~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~------- 264 (394)
T PRK11138 195 LRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY------- 264 (394)
T ss_pred ccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-------
Confidence 11111 2 3466677889999999999887655432110 000111111 2345555555
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
++.+..+|..+++.+.+...... ..+ ...+..+++++.++.+..+|..++...+......... .....+
T Consensus 265 ~g~l~ald~~tG~~~W~~~~~~~---~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v-- 333 (394)
T PRK11138 265 NGNLVALDLRSGQIVWKREYGSV---NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL-- 333 (394)
T ss_pred CCeEEEEECCCCCEEEeecCCCc---cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE--
Confidence 89999999999876654432211 111 1246677788889999999998876655432221111 111122
Q ss_pred CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeE-EEEcCCCCCEEEEeeCCCcEEEc
Q 013475 382 DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACID-VAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 382 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.+.+|+.++.+|.|+++|..+|+.+.+.+.....+.+ ..+. + ..|+.++.||.|+.+
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~--~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-D--DKLLIQARDGTVYAI 391 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-C--CEEEEEeCCceEEEE
Confidence 3567888999999999999999988877644333332 2222 3 367778899998865
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=3.5e-10 Score=106.29 Aligned_cols=217 Identities=17% Similarity=0.266 Sum_probs=160.6
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCC-cEE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKG-LLR 257 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg-~i~ 257 (442)
.+..+.+..|+...+|++|+-+.++|+.|+..|.|+++++.+|....... |...|+.+.-+-+|..+|.+.+... ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34566777899999999999999999999999999999999998887777 8999999999999865555555544 577
Q ss_pred EEECCC-CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc---cceeeeEEec
Q 013475 258 LWDIRT-GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE---AYTCPCVRHH 333 (442)
Q Consensus 258 iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~ 333 (442)
+|++.+ +...++|.. -.++.|+..-..-+.|.. .....+||+.+...+.+..... ...-.+..|+
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~-------~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTE-------ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhccc-------ccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 999864 445555543 356788876555555665 6789999999988776643322 2234678899
Q ss_pred CCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC
Q 013475 334 PFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE 413 (442)
Q Consensus 334 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 413 (442)
|+...++- || .+||.+....+..+..+.... .-.|+|+|..++.-++ |||+++.++++.+..-
T Consensus 1240 P~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~------~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1240 PCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG------GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL- 1302 (1516)
T ss_pred CCcceEee---Cc--eeeeeccHHHHhhhhhheecc------cccccCCCceEEeech-----hhhhHHHHHHhcCccc-
Confidence 98887763 33 579998887776666555332 2379999999998664 9999998887766542
Q ss_pred CceeEEEEcCCC
Q 013475 414 QACIDVAFHPIL 425 (442)
Q Consensus 414 ~~v~~~~~~p~~ 425 (442)
.-..+.|+..|
T Consensus 1303 -dqc~VtFNstG 1313 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTG 1313 (1516)
T ss_pred -cceEEEeccCc
Confidence 23456677766
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=4.2e-08 Score=84.49 Aligned_cols=219 Identities=18% Similarity=0.125 Sum_probs=136.8
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEE--eCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCC
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVK--WSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENS 244 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 244 (442)
+|+|..||..++ +.+....- ...+.... ...++..+++++.++.|..||..+|+.+..+.....+....... +
T Consensus 2 ~g~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~- 76 (238)
T PF13360_consen 2 DGTLSALDPRTG--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD-G- 76 (238)
T ss_dssp TSEEEEEETTTT--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE-T-
T ss_pred CCEEEEEECCCC--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec-c-
Confidence 678888888544 55544432 11122222 23356678888899999999999999998887443322222222 2
Q ss_pred CEEEEeeCCCcEEEEECCCCceEEEe-ccCC---CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee
Q 013475 245 NLFLSGGSKGLLRLWDIRTGKVAHEY-IQSL---GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV 320 (442)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 320 (442)
..++++..++.|+.+|..+|+.+.+. .... ..........+++.++.+.. ++.|..+|+++++.+....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEE
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEee
Confidence 45666678889999999999998874 3221 11222333334777777776 8999999999998876665
Q ss_pred ccccce---------eeeEEecCCCCeeEEEeCCCe-EEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec
Q 013475 321 YVEAYT---------CPCVRHHPFDPYFVAQSNGNY-IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 321 ~~~~~~---------~~~~~~~~~~~~l~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
...... ...-....++ .++++..++. +.+ |..++...+. .. .. . +. .....++..|++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~-~~--~~---~-~~-~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWS-KP--IS---G-IY-SLPSVDGGTLYVTS 219 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEE-EC--SS-----EC-ECEECCCTEEEEEE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEE-ec--CC---C-cc-CCceeeCCEEEEEe
Confidence 533111 1122222244 6666666664 555 8888764421 11 11 1 11 12456778888888
Q ss_pred CCCcEEEEecCCceeeE
Q 013475 391 SDGSIYFYNCRSSELER 407 (442)
Q Consensus 391 ~dg~i~iwd~~~~~~~~ 407 (442)
.++.|..||+.+|+.+-
T Consensus 220 ~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCCEEe
Confidence 99999999999998764
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.09 E-value=6.2e-09 Score=89.54 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=116.3
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCC--cceeeeeccCCCceeEEEeCCCCCEEEEE---ecCCcEEEEECCCC
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRD--QKLARVLNFHSAAVNDVKWSQQGLFVLSC---GYDCSSRLVDVEKG 222 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---~~d~~v~vwd~~~~ 222 (442)
+..+.+++. +++||.+..++...++++.... .++..... -...-+.+.|..+......+ +....+.+|....+
T Consensus 65 ~~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556677 8999999888887777775443 23333333 22333455555544444443 44566677777767
Q ss_pred cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCCEeEEEEeeCCCEEEeccCCCCCcCC
Q 013475 223 IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGPILDVEFTINGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 301 (442)
.+.-.+.|-..++.++|+||+ .+|+++..|..|++-....-..+..| -+|...|..++.-++ ..|++++.
T Consensus 143 ~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG------- 213 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG------- 213 (390)
T ss_pred CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC-------
Confidence 777778899999999999996 99999999999999887665555555 469999999998754 55888887
Q ss_pred CCeEEEEeCCCCcccce
Q 013475 302 ENSIVVWDVSREVPLSK 318 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~ 318 (442)
|++|++||+++++.+..
T Consensus 214 D~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDT 230 (390)
T ss_pred CCcEEEEecccCCcccc
Confidence 99999999999987744
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.7e-08 Score=89.12 Aligned_cols=226 Identities=14% Similarity=0.189 Sum_probs=148.8
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC-----------CCcEEEEE
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS-----------KGLLRLWD 260 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd 260 (442)
.=+-+.|||.|.||++--..| |.+|--.+...++.|.|.+ |.-+.|+|.. ++|++=+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEE
Confidence 346789999999999987666 9999888877777777654 7889999985 88887532 24799999
Q ss_pred CCCCceEEEeccCCC--C-EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC
Q 013475 261 IRTGKVAHEYIQSLG--P-ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP 337 (442)
Q Consensus 261 ~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (442)
+++|...+.|....+ . -.-+.||.|+++++... ...|.||+......+.. ....-..|..+.|+|.+.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~--------~~sisIyEtpsf~lld~-Kslki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT--------GNSISIYETPSFMLLDK-KSLKISGIRDFSWSPTSN 359 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEec--------cceEEEEecCceeeecc-cccCCccccCcccCCCcc
Confidence 999998877765222 2 23468999999999888 58899999876433322 222334688899999877
Q ss_pred eeEEEeC-----CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec----------CCCcEEEEecCC
Q 013475 338 YFVAQSN-----GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS----------SDGSIYFYNCRS 402 (442)
Q Consensus 338 ~l~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~dg~i~iwd~~~ 402 (442)
.|+.-.. -..+.+..+-....+.....+ . ..=..+-|-.+|.||+.-- .-..+.|+.++.
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlf---n--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLF---N--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccce---e--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 7765321 123444444444333221111 1 1123467788899987531 122356666655
Q ss_pred ceeeEeeeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 403 SELERKIKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
.......-.....|..++|-|.|.++.+..+.
T Consensus 435 KdIpve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 435 KDIPVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred cCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence 44333333346789999999999544444433
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.07 E-value=8.3e-08 Score=93.94 Aligned_cols=279 Identities=10% Similarity=0.068 Sum_probs=163.0
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
.+.|.++.|.-+ .+-++.+..+|.|.+-|.++.. ......-...|.+++|+||...++..+.++++.+-+- +...
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc
Confidence 368999999999 7777788888999999875443 3333345689999999999999999988777765432 2222
Q ss_pred EEeee------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE-EEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 225 TQSFR------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA-HEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 225 ~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
+.... ..+..-.+-|-... .. +-| ..|.....+....... .....+ +.=++|+|-.||++|++......
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrke-Tq-frg-s~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKE-TQ-FRG-SEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hhccccccccccccccceecccccc-ee-eec-chhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEecc
Confidence 21111 12223333343221 11 111 1122222211111110 001112 22356899999999998543111
Q ss_pred CcCCC-CeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE---eCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 298 SNMSE-NSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ---SNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 298 ~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
.+ +.|++||-+ ..+..........-.+++|-|.|..+++- .+++.|.+|..++...-.....+. .....
T Consensus 219 ---~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p--~de~~ 291 (1265)
T KOG1920|consen 219 ---TGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP--LDEKE 291 (1265)
T ss_pred ---CCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc--ccccc
Confidence 14 899999987 33444444455566789999999998883 345679999877644321111111 11123
Q ss_pred cEEEEEccCCCEEEE---ecCCCcEEEEecCCce--eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 374 PIKCSFSLDGEKLVS---GSSDGSIYFYNCRSSE--LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 374 v~~~~~s~~g~~l~~---g~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+..++|+.++..|++ ......|++|-+.+.. +.+.+.-..... +.|+|..+..|..-..+|...++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 789999999999987 4455559999887643 223333222222 77777654444444455555443
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.07 E-value=7.7e-10 Score=89.48 Aligned_cols=195 Identities=12% Similarity=0.158 Sum_probs=119.2
Q ss_pred eEEEEEccCCCCEEEEeeCCCcEEEEECCCCce------------EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCC
Q 013475 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV------------AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 234 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 301 (442)
++.+.+.-+ ..|+++..++.+..+....+.+ .+.+..+.++-.+-..+--+..++++..
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~------- 109 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA------- 109 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC-------
Confidence 566666653 5667776666665554433222 2333333333233333445677888887
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe-----CCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-----NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
||.+.+++.+....+............+.+....++.+.++. .-+..+.|+++....+..- +.....+.+
T Consensus 110 dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-----~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-----KKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc-----ccccccchh
Confidence 999999998873332222221111222223333444444432 2234555665543322111 111223778
Q ss_pred EEEccC-CCEEEEecCCCcEEEEecCCcee-eEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSLD-GEKLVSGSSDGSIYFYNCRSSEL-ERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++-+|. ...+++|+.||.+-+||.++... ...++.|+.+|+.+-|+|..+..|++++.||.+..||
T Consensus 185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 888885 45677889999999999988643 4456789999999999999999999999999999997
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.06 E-value=6.9e-08 Score=78.78 Aligned_cols=242 Identities=11% Similarity=0.046 Sum_probs=156.2
Q ss_pred EEEeeCC----CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCCcE
Q 013475 150 SINWSPT----HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 150 ~~~~s~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
.+.|-|. ..-+||.|+.-|...+|...+.+. .......|...|+-+.=.- ....+..++.|.++++.+++.+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 4555553 145799999999999999865533 3333333555443332222 223466778899999999876654
Q ss_pred EEeeeC-CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ce-EE-EeccCCCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 225 TQSFRE-ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KV-AH-EYIQSLGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 225 ~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
...... .-.+.++.+++++ .++++.+....|..|.+... +. +. ........-.+..|+.....++++..
T Consensus 151 ~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q------ 223 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ------ 223 (344)
T ss_pred cceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec------
Confidence 433332 2348899999996 88888888889999988753 22 23 12223344467889999999999998
Q ss_pred CCCeEEEEeCCCCccc----ceeeccccceeeeEEecCCCC--eeEEEeCCCeEEEeeCCCCcccccceeEeec--cc-c
Q 013475 301 SENSIVVWDVSREVPL----SKQVYVEAYTCPCVRHHPFDP--YFVAQSNGNYIAIFSSTPPFRLDKFKRYESH--GV-S 371 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~-~ 371 (442)
||++.|||++..... ......+.+.+..+.|++.|. +|+..-.-+.+.+.|+++....+.+...... .+ .
T Consensus 224 -dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~t 302 (344)
T KOG4532|consen 224 -DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNT 302 (344)
T ss_pred -CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccc
Confidence 999999999974422 223445778899999998765 4555666678999999887665433222111 11 1
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
..+....|+.++.-+.+.+++. +.=|++.
T Consensus 303 q~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 303 QHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred cccccccccCCCcccccccchh-hheeecc
Confidence 2255566777666666555432 4445544
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=3.1e-09 Score=98.09 Aligned_cols=246 Identities=19% Similarity=0.285 Sum_probs=166.6
Q ss_pred ceEEEEeeCCC-CCEEEEecCCCcEEEEEcccCC-cceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEEECCCCc
Q 013475 147 AVNSINWSPTH-AHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 147 ~V~~~~~s~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
.|-.+.|++.. ..+-+.......-.+|++.... ......+.+|...|+.+-|++. -..+++++.|..+..||+++-.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 35667787752 2233334445567789986443 3455567789999999999994 4678999999999999998864
Q ss_pred -EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeC-CCEEEeccCCCCCc
Q 013475 224 -ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTIN-GKQFVSSSDVSGSN 299 (442)
Q Consensus 224 -~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~ 299 (442)
.+..+. -......+.|+-.+.+.++ .+....|++||++.+ .++..+++|...|+.+.|+.- ...+.+++.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----- 222 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----- 222 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC-----
Confidence 344443 4556678999887655554 455567999999976 577888999889999988652 345666676
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE--EeCCCeEEEeeCCCCccc-------ccceeEeeccc
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA--QSNGNYIAIFSSTPPFRL-------DKFKRYESHGV 370 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~i~~~~~~~~~-------~~~~~~~~~~~ 370 (442)
|++|++||..+..............+..-.+.|-|.-..+ .-.++.+.+++.++.... ..+..+.+|.
T Consensus 223 --d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~- 299 (1081)
T KOG0309|consen 223 --DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD- 299 (1081)
T ss_pred --CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcc-
Confidence 9999999998876666666666667777777786654333 222334555544433222 2234555553
Q ss_pred ccCcEEEEEccCC----------CEEEEecCCCcEEEEecCC
Q 013475 371 SGFPIKCSFSLDG----------EKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 371 ~~~v~~~~~s~~g----------~~l~~g~~dg~i~iwd~~~ 402 (442)
..|....|-..+ -.|++=+.|..+++|-+.+
T Consensus 300 -D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 300 -DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 445444443322 2689999999999998764
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=1.7e-07 Score=80.66 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=132.6
Q ss_pred CCcEEEEECCCCcEEEeeeCC---cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475 211 DCSSRLVDVEKGIETQSFREE---LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
+|+|..||..+|+.+...... ....+..+. ++ ..+++++.++.|+.||..+|+.+.++... +.+.......++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DG-GRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ET-TEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eC-CEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeecccc
Confidence 789999999999999888742 222222232 33 56777789999999999999998877653 3322222333444
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCccccee-eccc-c-ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccccee
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ-VYVE-A-YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKR 364 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 364 (442)
++.+.. ++.|..+|..+++.+... .... . ...........+..++++..++.|..+|..++..++....
T Consensus 79 -v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 79 -VYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp -EEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred -cccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 444444 789999999999887763 3221 1 1112222233388888898899999999998877654433
Q ss_pred Eeeccccc------Cc-EEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCc
Q 013475 365 YESHGVSG------FP-IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 365 ~~~~~~~~------~v-~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 437 (442)
....... .+ ..+.+. ++ .++.++.+|.+.-+|+.+++.+.... ...+..+ ...++ ..|+.++.++.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~ 223 (238)
T PF13360_consen 151 -GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGR 223 (238)
T ss_dssp -STT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTE
T ss_pred -CCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCE
Confidence 1111001 01 122222 44 77777778864444999998664333 2333332 33444 46777768999
Q ss_pred EEEcC
Q 013475 438 VSVYE 442 (442)
Q Consensus 438 i~iwd 442 (442)
|..||
T Consensus 224 l~~~d 228 (238)
T PF13360_consen 224 LYALD 228 (238)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=3.7e-10 Score=106.17 Aligned_cols=263 Identities=20% Similarity=0.203 Sum_probs=176.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC--
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC-- 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-- 212 (442)
.+..++|+.|+...+|++|+-+ .+.|+.|+..|.|++|++.++ .......+|...|+.+.=+.+|..+++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCc
Confidence 3556788899999999999999 889999999999999999655 66677888999999999999998888766543
Q ss_pred cEEEEECCC-CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec-c---CCCCEeEEEEeeCCC
Q 013475 213 SSRLVDVEK-GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI-Q---SLGPILDVEFTINGK 287 (442)
Q Consensus 213 ~v~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~---~~~~i~~~~~~~~~~ 287 (442)
-..+|++.. +.....|. .-.++.|+..- ..-+.|.......+||+.++..+.++- + ....-++..|+|+..
T Consensus 1168 lsaLW~~~s~~~~~Hsf~---ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD---EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred hHHHhccccccCcccccc---ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 467899865 33444443 34567787653 333445555679999999988766632 1 112336788999988
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
+++- || .+||++..+.+..+.... ....-.|+|.|..++..+ .|||+++-..+..+..+.
T Consensus 1244 LIln----------dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld- 1303 (1516)
T KOG1832|consen 1244 LILN----------DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD- 1303 (1516)
T ss_pred eEee----------Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc-
Confidence 7764 44 479999876655443222 233456899999888865 478888765544333322
Q ss_pred cccccCcEEEEEccCCCEEEEecC------C-----------CcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEE
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSS------D-----------GSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~------d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 430 (442)
-+.+.|+..|..++..-. | ...+-||....+.+.++.. ...|.+++-.+.. .+|.
T Consensus 1304 ------qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D-~~l~ 1375 (1516)
T KOG1832|consen 1304 ------QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTD-SFLG 1375 (1516)
T ss_pred ------ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCcc-ceEE
Confidence 346788888877664330 0 0123333334445555543 4456677777766 4655
Q ss_pred Ee
Q 013475 431 SC 432 (442)
Q Consensus 431 s~ 432 (442)
..
T Consensus 1376 vI 1377 (1516)
T KOG1832|consen 1376 VI 1377 (1516)
T ss_pred EE
Confidence 44
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=1.4e-07 Score=87.59 Aligned_cols=260 Identities=10% Similarity=-0.002 Sum_probs=152.4
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCC--Ccee-----EEEeCC--CCCEEEEEecCCcEEEEECCCCcEEEee
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHS--AAVN-----DVKWSQ--QGLFVLSCGYDCSSRLVDVEKGIETQSF 228 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~--~~v~-----~l~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 228 (442)
+..++.++.+|.|.-+|..++ +.+....... .... .+.-.+ ++..++.++.++.+..+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTG--KEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 446777777888888888655 3333332111 0000 000011 3456777888999999999999998888
Q ss_pred eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE-----eEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 229 REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI-----LDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 229 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
.....+.+--...+ ..++.+..++.|..+|.++|+.+..+......+ .+-... ++ .++.++. ++
T Consensus 147 ~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~~-------~g 215 (394)
T PRK11138 147 KVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGGD-------NG 215 (394)
T ss_pred cCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEcC-------CC
Confidence 75444332111112 456677888999999999999887775431110 111111 33 4455555 89
Q ss_pred eEEEEeCCCCcccceeeccccc------eeeeEEecC--CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 304 SIVVWDVSREVPLSKQVYVEAY------TCPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
.+..+|..+++.+......... ....+..+| .+..+++++.++.+..+|..++...+.... ....
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------~~~~ 288 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-------GSVN 288 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-------CCcc
Confidence 9999999888766543321110 000111122 255677777889999999988876554221 0111
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC-ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ-ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+. ..+..|+.++.+|.++.+|..+|+.+-....... ...+.... + ..|+.++.||.|.+.|
T Consensus 289 ~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~--g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 289 DFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N--GYLVVGDSEGYLHWIN 351 (394)
T ss_pred CcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-C--CEEEEEeCCCEEEEEE
Confidence 122 2566888888999999999999887654332111 11222222 2 3566777788777653
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=2.2e-06 Score=74.01 Aligned_cols=217 Identities=20% Similarity=0.214 Sum_probs=139.2
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeC-CCCCEEEEEecCCcEEEEECCCCcEEEee
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWS-QQGLFVLSCGYDCSSRLVDVEKGIETQSF 228 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 228 (442)
++.|.+.++.++++--..+.|..|+..+. . ...+... . ...+.+. +++ .|+.+..++ +.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~-~~~~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--E-VEVIDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT--E-EEEEESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC--e-EEEEecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEe
Confidence 57899854888888878899999998544 2 2222212 2 6777787 564 555555444 666699988655444
Q ss_pred e------CCcceEEEEEccCCCCEEEEeeCC--------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe-cc
Q 013475 229 R------EELAVRVVKFHPENSNLFLSGGSK--------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS-SS 293 (442)
Q Consensus 229 ~------~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~ 293 (442)
. .....+.+++.++| ++.++.... |.|..++.. ++... +.......+.|+|+++++.|+. -+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeeccc
Confidence 3 23568899999997 666665433 557777776 44333 3333456789999999987764 44
Q ss_pred CCCCCcCCCCeEEEEeCCCCcc-cc---eeecccc--ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 294 DVSGSNMSENSIVVWDVSREVP-LS---KQVYVEA--YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
. .+.|..|++..... +. ....... .....+++..+|+.+++....+.|.+++.+. ..+ ..+..
T Consensus 154 ~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~~~---~~i~~ 222 (246)
T PF08450_consen 154 F-------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-KLL---REIEL 222 (246)
T ss_dssp T-------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-CEE---EEEE-
T ss_pred c-------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-cEE---EEEcC
Confidence 4 78899999864332 11 1111111 2467899999999999988999999999884 333 22222
Q ss_pred cccccCcEEEEEc-cCCCEEEEe
Q 013475 368 HGVSGFPIKCSFS-LDGEKLVSG 389 (442)
Q Consensus 368 ~~~~~~v~~~~~s-~~g~~l~~g 389 (442)
. ...+++++|. ++.+.|++.
T Consensus 223 p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 P--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S--SSSEEEEEEESTTSSEEEEE
T ss_pred C--CCCEEEEEEECCCCCEEEEE
Confidence 2 2358899994 565655543
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.03 E-value=3.8e-07 Score=75.65 Aligned_cols=220 Identities=12% Similarity=0.072 Sum_probs=125.4
Q ss_pred EEeCCCCCEEEEEecCCcEEEEECCCC--cEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 196 VKWSQQGLFVLSCGYDCSSRLVDVEKG--IETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 196 l~~~~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
++.+.+|+.||.. .|..|.|-..+.. ..+.+.+ ..-.=..++|+||+ .+|+.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccc-ceeEE
Confidence 5667788877764 4777777665543 1222222 22345679999996 8999999999999999964 44444
Q ss_pred eccC-------CCCEeEEEEeeCC------CEEEeccCCCCCcCCCCeEEEEeCCCC--cc---cc--eeeccccceeee
Q 013475 270 YIQS-------LGPILDVEFTING------KQFVSSSDVSGSNMSENSIVVWDVSRE--VP---LS--KQVYVEAYTCPC 329 (442)
Q Consensus 270 ~~~~-------~~~i~~~~~~~~~------~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~---~~--~~~~~~~~~~~~ 329 (442)
+... ...|..+.|.... ..|++... +|.++-|-+..+ +. .. .........+.+
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-------~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-------RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEec-------cceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 4322 2356677775432 13444443 777777765322 11 11 122234568999
Q ss_pred EEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE---ccCCCEEEEecCCCc------EEEEec
Q 013475 330 VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF---SLDGEKLVSGSSDGS------IYFYNC 400 (442)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~g~~l~~g~~dg~------i~iwd~ 400 (442)
+.++|..+.|++|+....=.-... .....+++-.. +|..+.+ +...|+. ..+|.+
T Consensus 153 ~vy~p~h~LLlVgG~~~~~~~~s~---------------a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 153 AVYHPKHRLLLVGGCEQNQDGMSK---------------ASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEEcCCCCEEEEeccCCCCCcccc---------------ccccCceEEEEcCCCCcEEEc-cccCccccccccccceeec
Confidence 999999998888665432000000 00001111111 1221111 1222221 234444
Q ss_pred CCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 401 RSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
-+.+...........|..|..|||| .+||+...+|.|.+|+
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWE 257 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEe
Confidence 4333322222346789999999999 7999999999999996
No 307
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=4.8e-09 Score=90.22 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=102.5
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce--eeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK--QVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
..+..++.+++++.+.. +....+++++......+ ....-......+.+..+.....++...|.++.+|.-.
T Consensus 66 ~~~~~s~~~~llAv~~~-------~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATS-------SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccCCCceEEEEEeC-------CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 44556778888888876 77776777665443111 1111122344555555666666555444444444332
Q ss_pred CcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee-ccCCceeEEEEcCCCCCEEEEeeC
Q 013475 356 PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK-AYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
... ...... -+|-..++.++|+||+++|+++..|..|+|-.+..-..+..+- ||...|..++.-++. .|+++|.
T Consensus 139 ~~~-~~~~~~--lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sG 213 (390)
T KOG3914|consen 139 ADS-GRCEPI--LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSG 213 (390)
T ss_pred ccc-cCcchh--hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCC
Confidence 111 111222 2444678899999999999999999999998887766666554 699999999999984 7999999
Q ss_pred CCcEEEcC
Q 013475 435 NGDVSVYE 442 (442)
Q Consensus 435 dg~i~iwd 442 (442)
|++|++||
T Consensus 214 D~tlr~Wd 221 (390)
T KOG3914|consen 214 DKTLRLWD 221 (390)
T ss_pred CCcEEEEe
Confidence 99999997
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=5.2e-09 Score=86.95 Aligned_cols=200 Identities=22% Similarity=0.392 Sum_probs=138.1
Q ss_pred cceEEEEeeCCCC-CEEEEecCCCcEEEEEcccCCcce----------------------------------------ee
Q 013475 146 KAVNSINWSPTHA-HLLASAGMDQSICIWNVWSRDQKL----------------------------------------AR 184 (442)
Q Consensus 146 ~~V~~~~~s~~~~-~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------------~~ 184 (442)
..|..+.|..+++ ..++..+.|++|++|.+...+.+. .+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 5688999987733 345556679999999985431110 11
Q ss_pred ee-ccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE---EEeee-C-----CcceEEEEEccCCCCEEEEeeCCC
Q 013475 185 VL-NFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE---TQSFR-E-----ELAVRVVKFHPENSNLFLSGGSKG 254 (442)
Q Consensus 185 ~~-~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~dg 254 (442)
.+ ..|...|+++.|+.|...++++. |-.|.+|+++--.. +..++ | ...|++..|+|...++|.-.+..|
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred eccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 11 34777889999999988888764 77899999875322 22222 2 245889999998878888888899
Q ss_pred cEEEEECCCCceE------EE----------eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccc
Q 013475 255 LLRLWDIRTGKVA------HE----------YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLS 317 (442)
Q Consensus 255 ~i~iwd~~~~~~~------~~----------~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~ 317 (442)
.|++-|++..... .. +.+-...|..+.|+++|+++++-.. -+|+|||.+..+ ++.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--------ltvkiwDvnm~k~pik 316 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--------LTVKIWDVNMAKNPIK 316 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--------ceEEEEecccccCCce
Confidence 9999999843211 11 1122346889999999999999884 899999998754 333
Q ss_pred eeeccc-----------c---ceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 318 KQVYVE-----------A---YTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 318 ~~~~~~-----------~---~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
++..+. . ..-..+.|+-+.+.+++|+..+..-+|-..
T Consensus 317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 331111 0 122346788888899999888887777643
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.97 E-value=2.2e-06 Score=73.42 Aligned_cols=237 Identities=11% Similarity=0.058 Sum_probs=148.0
Q ss_pred eEEEEeeCCCCCEEEEecCCC-cEEEEEcccCCcceeeeeccCCCc--eeEEEeCCCCCEEEEEec-----CCcEEEEEC
Q 013475 148 VNSINWSPTHAHLLASAGMDQ-SICIWNVWSRDQKLARVLNFHSAA--VNDVKWSQQGLFVLSCGY-----DCSSRLVDV 219 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~~~-----d~~v~vwd~ 219 (442)
...++.+|+.+..++.+-.-| ...+||..++ .....+....+. --.-.|++||++|++.-. .|.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 456788886577777776665 4567888554 333333322221 124589999999998644 588999999
Q ss_pred C-CCcEEEeee-CCcceEEEEEccCCCCEEEEee------------------CCCcEEEEECCCCceEEE--e--ccCCC
Q 013475 220 E-KGIETQSFR-EELAVRVVKFHPENSNLFLSGG------------------SKGLLRLWDIRTGKVAHE--Y--IQSLG 275 (442)
Q Consensus 220 ~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~ 275 (442)
. +.+.+.++. +.-....+.+.|||. .|+++. .+-.+.+.|..+|+.+.+ + ..|..
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 9 556777777 566678899999974 444431 234577778888887766 3 33777
Q ss_pred CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee------ccccceeeeEEecCCCCeeEE-EeCCCeE
Q 013475 276 PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV------YVEAYTCPCVRHHPFDPYFVA-QSNGNYI 348 (442)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~-~~~~~~i 348 (442)
.|..+++..+|..++..-........---|-+++.... +.... ......+-+|+++.++..+++ +-..+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 89999999998877665541111111123444443332 21111 122457889999999987755 5578899
Q ss_pred EEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEE
Q 013475 349 AIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFY 398 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iw 398 (442)
.+||..++..+.... -.-+..++-..++ ++++. ..|.+...
T Consensus 242 ~~~d~~tg~~~~~~~-------l~D~cGva~~~~~-f~~ss-G~G~~~~~ 282 (305)
T PF07433_consen 242 AVWDAATGRLLGSVP-------LPDACGVAPTDDG-FLVSS-GQGQLIRL 282 (305)
T ss_pred EEEECCCCCEeeccc-------cCceeeeeecCCc-eEEeC-CCccEEEc
Confidence 999998875543221 1224456666666 45544 44554333
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=1.9e-09 Score=63.19 Aligned_cols=38 Identities=34% Similarity=0.726 Sum_probs=36.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWN 174 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd 174 (442)
++++++++|.+.|++|+|+|+ +++|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 578899999999999999999 99999999999999997
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.6e-09 Score=87.98 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=131.0
Q ss_pred EEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc---ccceeecccc
Q 013475 248 LSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV---PLSKQVYVEA 324 (442)
Q Consensus 248 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~ 324 (442)
++.+.+..|-+-|++++.. +.|. ..+.|.++.|...+..+..|.. +|.|..+|++... .......-|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcR-------ngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCR-------NGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEeccc-------CCcEEEEEeeecccCCCcceEEEEcC
Confidence 5556677888999988743 3333 5578889999988999999998 9999999999752 2333445567
Q ss_pred ceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 325 YTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 325 ~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
..++++..-. ++++|++.+.+|.|.+||.+...+...+..+++|.......-+-..+....|++++.|...+||.++.+
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 7888888777 788999999999999999998877666788888876655556667777889999999999999999999
Q ss_pred eeeEeeecc----CCceeEEEEcC
Q 013475 404 ELERKIKAY----EQACIDVAFHP 423 (442)
Q Consensus 404 ~~~~~~~~~----~~~v~~~~~~p 423 (442)
.++.+++-. +..+.+++|..
T Consensus 379 hLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 379 HLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ceeeccCCCCccccccccceehhc
Confidence 999888743 23456666653
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8.1e-08 Score=90.02 Aligned_cols=184 Identities=18% Similarity=0.229 Sum_probs=134.5
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
...++|++++ +++|+-|..+|.|++++.. +.. .....|... ..+|.++++|+.||+|.|-.+.+.+.
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~---~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQ---GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecC---Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4678888888 6799999999999999973 233 233335444 55899999999999999999999999
Q ss_pred EEeeeCCcceEEEEEccC----CCCEEEEeeCCCcEEEEECCCC--ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 225 TQSFREELAVRVVKFHPE----NSNLFLSGGSKGLLRLWDIRTG--KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
..++..+.++.+++++|+ ....+++||.-| +.++.-+-. +.-..+....++|.++.|. |++++-+.
T Consensus 106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan----- 177 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN----- 177 (846)
T ss_pred ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-----
Confidence 999999999999999997 346799999988 777754311 1112355667899999995 88888888
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccc-----eeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAY-----TCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
|-.|++||..+.+.+..+...+.. --..+.|.++...+ -+...+|.+..++
T Consensus 178 ---d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV--IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 ---DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV--IGWGDSVKICSIK 233 (846)
T ss_pred ---CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE--EecCCeEEEEEEe
Confidence 677999999988776655544321 12345555544333 3355566666665
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.92 E-value=5.5e-08 Score=92.26 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=142.1
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeE
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
++..++.|+....+..+|+.+.+..+... ....|+-++.+ ..++++|...|+|.+-|.++.+.++++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 45567788888889999999998887777 34357766664 478999999999999999999999999999999976
Q ss_pred EEEeeCCCEEEeccCCC--CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCC
Q 013475 280 VEFTINGKQFVSSSDVS--GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~--~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~ 356 (442)
+.. .|+.|++++.-. +.-..|..|++||++..+.+..+..... ..-+.|+|.- ..+++++..|...+.|..+.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeecccccc
Confidence 654 688999887521 1122478899999998776655444333 2446677753 46777888999998884332
Q ss_pred cccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 357 FRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 357 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
.... ...+..+.....+..+.+|++|+.++.|..+|.|.+|-
T Consensus 299 sNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2211 12233334445588999999999999999999999997
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=5.6e-09 Score=87.98 Aligned_cols=160 Identities=14% Similarity=0.197 Sum_probs=121.3
Q ss_pred EeeCCC-CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC-----cEE
Q 013475 152 NWSPTH-AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG-----IET 225 (442)
Q Consensus 152 ~~s~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-----~~~ 225 (442)
+|+-+- +.. ++.+.+..|-+-|++++ ..+.|. ..+.|.++.|...++++..|+.+|.|.++|++.. .+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 555431 333 45556778888888655 233344 5688999999998999999999999999999764 567
Q ss_pred EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce---EEEeccCCCCEeEE--EEeeCCCEEEeccCCCCCcC
Q 013475 226 QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV---AHEYIQSLGPILDV--EFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~--~~~~~~~~l~~~~~~~~~~~ 300 (442)
..+-|+..|+++........+|++.+.+|+|++||++.-++ +..+.+|-..-..+ -..+....++++++
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------ 366 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------ 366 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------
Confidence 77889999999998873458888999999999999997666 88888885533333 33556677788887
Q ss_pred CCCeEEEEeCCCCcccceeeccc
Q 013475 301 SENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
|...+||.++.+..+.++....
T Consensus 367 -DcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 367 -DCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred -eeEEEEEecccCceeeccCCCC
Confidence 9999999999988777665543
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=5e-09 Score=61.33 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=36.7
Q ss_pred ceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 403 SELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++++.++.+|.+.|++++|+|++ .+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46889999999999999999998 7999999999999997
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=2.7e-06 Score=69.51 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=83.3
Q ss_pred eeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCc
Q 013475 153 WSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREEL 232 (442)
Q Consensus 153 ~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 232 (442)
..+|...+++.|+..+.+.--|..+++..-...+. ..|.+-+.- -|++++.|+..|.+++.+.++|.....+...+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 44454668888999999888888665333222222 333332222 35679999999999999999999888888555
Q ss_pred ceEEE-EEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC
Q 013475 233 AVRVV-KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274 (442)
Q Consensus 233 ~v~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (442)
.|.+- ...++ ..++..|+.|++.+..|.++...+.+.+...
T Consensus 94 ~vk~~a~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 94 TVKVRAQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred hhccceEEcCC-CceEEEecCCCcEEEecccccceEEecccCC
Confidence 55433 34555 4899999999999999999888877765443
No 317
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.86 E-value=1.7e-05 Score=70.30 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=138.2
Q ss_pred CCcceecccccccceEE-----EEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE
Q 013475 134 PGRLSTALCHHTKAVNS-----INWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~-----~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 208 (442)
++..+..|..+...-.. =+|..|+.++|+.+..||.-.+|-++-.+.+..+...+-........++++++.++-.
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEE
Confidence 44445555443333333 3567785567777777776666655434445444444322334456778888888776
Q ss_pred ecCCcEEEEECCCCcEEEeee-CCcceEEEEEc--cCCCCEEEEee----------------------CCCcEEEEECCC
Q 013475 209 GYDCSSRLVDVEKGIETQSFR-EELAVRVVKFH--PENSNLFLSGG----------------------SKGLLRLWDIRT 263 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~~~~----------------------~dg~i~iwd~~~ 263 (442)
.....|+-.|+++.+....+. ...-+-...|. .++ ..++-.- -...|.-.|+.+
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 667789999999988777666 33334345553 333 3332211 123466667777
Q ss_pred CceEEEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCe-EEEEeCCC--CcccceeeccccceeeeEEecCCCCee
Q 013475 264 GKVAHEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENS-IVVWDVSR--EVPLSKQVYVEAYTCPCVRHHPFDPYF 339 (442)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~-i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 339 (442)
|+....+. ....+..+.|+|.. ..|+.|.+- ..+.. -+||-+++ ..............+..=-|.++|..+
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEG----pw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEG----PWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-----TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccC----CcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 76544443 34677888999854 444444430 01221 25565544 221111112234455666789999877
Q ss_pred EEE-----eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC----------------CcEEEE
Q 013475 340 VAQ-----SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD----------------GSIYFY 398 (442)
Q Consensus 340 ~~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------------g~i~iw 398 (442)
..- ..+..|.-++..+..... + ... .....+-.++||++++-=+.| --|+++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~-~--~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRR-L--MEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEE-E--EEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred EEEeecCCCCceEEEeeCCCCCCceE-E--EeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 652 234467777777654321 1 111 123455667899888743332 146778
Q ss_pred ecCCceeeEeeeccC---------C--ceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 399 NCRSSELERKIKAYE---------Q--ACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 399 d~~~~~~~~~~~~~~---------~--~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
++..++... +..|. . .=-...|+||+..+|.++...|...||
T Consensus 326 ~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 326 DVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 887665421 22221 1 124679999998788888888877765
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.9e-08 Score=85.91 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=148.8
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC---cEEEeee-CCcceEEEEEccCCCCEEEEeeC-CCcEEEEECCC
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG---IETQSFR-EELAVRVVKFHPENSNLFLSGGS-KGLLRLWDIRT 263 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 263 (442)
|...|+.+.-. -.+++++++.||.++.|.-..- +.+..+. |...+.+++.+-++ .++.+.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeec
Confidence 77777776544 4569999999999999986542 2233333 77788889999886 88888777 99999999987
Q ss_pred CceEEEeccCCCCEeEEEEee-CC--C-EEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeeccccceeeeEEecCCCCe
Q 013475 264 GKVAHEYIQSLGPILDVEFTI-NG--K-QFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~-~~--~-~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 338 (442)
-..+..++...-+ ..+.|.. .| . .++.+.. .++.+.++|-.... +.......+..++.++.+.+.+..
T Consensus 86 ~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~------~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLF------KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCC-CceEEecCCCCeeeeEEeecc------cCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 6554333322111 1122221 22 1 3333332 38999999987755 455566677889999999999999
Q ss_pred eEEEeCCCeEEEeeCCCCccc------cccee----EeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEe
Q 013475 339 FVAQSNGNYIAIFSSTPPFRL------DKFKR----YESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERK 408 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~------~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~ 408 (442)
+++....|.|..|........ ..++. +..........++.|+|+|..+.+-+.|..|+++++.+|++++.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 999999999999998852211 11110 11112345678899999999999999999999999999876655
Q ss_pred e
Q 013475 409 I 409 (442)
Q Consensus 409 ~ 409 (442)
+
T Consensus 239 i 239 (558)
T KOG0882|consen 239 I 239 (558)
T ss_pred h
Confidence 4
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.7e-06 Score=80.79 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=134.8
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCc-eeEEEeCCCCCEEEEEecCCc-----EEEEECC
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAA-VNDVKWSQQGLFVLSCGYDCS-----SRLVDVE 220 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~~~d~~-----v~vwd~~ 220 (442)
.|+| |++. +..++.|+.+|.|.+.+ ...+....++.+... |..+....+..+|++.+.|+. |+||+++
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln---~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILN---SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEec---ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4444 5666 77899999999999988 445666778877777 554444444478888877654 8999987
Q ss_pred CC------cEE---Eeee-----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----CceEEEeccCCCCEeEEEE
Q 013475 221 KG------IET---QSFR-----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----GKVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 221 ~~------~~~---~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~ 282 (442)
.- +++ +.+. ...++.+++.+.+ -..+++|-.+|.|..+.-.- +....-......+|+.+.+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 43 233 2222 2456888999988 58999999999999985321 1111112234579999999
Q ss_pred eeCCCE-EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 283 TINGKQ-FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 283 ~~~~~~-l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
..+++. +.+++ ...|.+|.+....+.......++....|..+++....++++ .+..+.+|+......
T Consensus 180 ~~d~~s~lFv~T--------t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 180 RSDGKSVLFVAT--------TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGP 247 (933)
T ss_pred ecCCceeEEEEe--------cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcce
Confidence 999887 33333 57899999986554444466677788888888766644444 566789998876543
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=1.3e-07 Score=89.86 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=122.0
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec---------CCcEEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY---------DCSSRLV 217 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---------d~~v~vw 217 (442)
.|+-++.+ +++|.+|...|+|.+-|. ...+.++++..|++.|.++.. .|+.|++|+. |..|+||
T Consensus 179 ~v~imR~N---nr~lf~G~t~G~V~LrD~--~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRYN---NRNLFCGDTRGTVFLRDP--NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEec---CcEEEeecccceEEeecC--CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhh
Confidence 45555543 789999999999999998 556899999999999988776 6789999985 6678999
Q ss_pred ECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEEC---CCC-ceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 218 DVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDI---RTG-KVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 218 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
|++..+.+.-+.......-+.|+|.=...+++++..|...+-|. .+. .-+..+......+..++++++++.++.+.
T Consensus 252 DLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd 331 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD 331 (1118)
T ss_pred hhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec
Confidence 99998888877755556788999987788999999999999993 332 12333344445699999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCC
Q 013475 294 DVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~ 311 (442)
. +|.|.+|--+
T Consensus 332 ~-------~g~v~~wa~~ 342 (1118)
T KOG1275|consen 332 H-------EGHVNLWADR 342 (1118)
T ss_pred c-------cCcEeeecCC
Confidence 8 9999999843
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=1.1e-08 Score=93.21 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=135.4
Q ss_pred ccceEEEEeeCCCC-CEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEec----CCcEEEEE
Q 013475 145 TKAVNSINWSPTHA-HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGY----DCSSRLVD 218 (442)
Q Consensus 145 ~~~V~~~~~s~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~----d~~v~vwd 218 (442)
...+.|++++-+.. .+++.|..+|.|.+-.+......-.....+|...+++++|++ |.+.|++|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45677888776533 578889999999999986554443456667889999999998 6667776632 67899999
Q ss_pred CCCC--cEE--Eeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCEEEe
Q 013475 219 VEKG--IET--QSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVS 291 (442)
Q Consensus 219 ~~~~--~~~--~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 291 (442)
+.++ .+. ..|. .......++|..+ .+++++|.....+.++|++.... .........+..+...| .++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceec
Confidence 9887 221 1222 2345568889866 58889999989999999984321 11111223556677788 7778877
Q ss_pred ccCCCCCcCCCCeEEEEe-CCCCc-ccceeec---cccceeeeEEecCCCCe--eEEEeCCCeEEEeeCCC
Q 013475 292 SSDVSGSNMSENSIVVWD-VSREV-PLSKQVY---VEAYTCPCVRHHPFDPY--FVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd-~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~--l~~~~~~~~i~i~~~~~ 355 (442)
-. |+.|.+|| .++-+ .+..+.. .....+..++|+|...- .+..-..++|+.|++..
T Consensus 214 ~~--------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS--------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cc--------cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 76 89999999 44432 2222211 11235788999996543 33345567899998753
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.2e-06 Score=79.52 Aligned_cols=207 Identities=12% Similarity=0.110 Sum_probs=135.1
Q ss_pred EeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCC-----cEEEEECCCC------
Q 013475 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKG-----LLRLWDIRTG------ 264 (442)
Q Consensus 197 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~------ 264 (442)
+|++++..++.|+.+|.|.+.+-. .+.++.|+ +...+...-+.-++.++|++.+.|+ .|++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 357788899999999988887732 33335555 3444333334444457888877765 4999999742
Q ss_pred ceE--EEecc-----CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC---CCcccceeeccccceeeeEEecC
Q 013475 265 KVA--HEYIQ-----SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS---REVPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 265 ~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
+++ +.+.. ...++.+++.+.+-+.+++|-. +|.|.++.-. ..............+|+.+.+..
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~-------nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT-------NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEec-------CcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 223 12222 3457899999999999999998 9999998532 22222334455677899999999
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee-ccC
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK-AYE 413 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~ 413 (442)
+++.++.......|.+|.+.+.. ........ +...+.|..|++....+++++.+ .|.+|+.........+. +|.
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRT--PSLKVLDN--NGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred CCceeEEEEecceeEEEEecCCC--cceeeecc--CCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCe
Confidence 99986666677788888888543 11222332 33456677777655546666544 49999987666555665 555
Q ss_pred Cce
Q 013475 414 QAC 416 (442)
Q Consensus 414 ~~v 416 (442)
...
T Consensus 257 k~~ 259 (933)
T KOG2114|consen 257 KEM 259 (933)
T ss_pred EEE
Confidence 443
No 323
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.67 E-value=5.3e-05 Score=66.70 Aligned_cols=228 Identities=13% Similarity=0.125 Sum_probs=132.3
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE-----------
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ----------- 226 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~----------- 226 (442)
++.|+.|..+| +.+++.... ....... +...|..+...++-+.|++-+ |+.+.++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~-~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDP-SKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCC-ccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 67899998888 899998222 2333333 233499999999877777765 6999999987654433
Q ss_pred ----eeeCCcceEEEE--EccCCCCEEEEeeCCCcEEEEECCCC-----ceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 227 ----SFREELAVRVVK--FHPENSNLFLSGGSKGLLRLWDIRTG-----KVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 227 ----~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
.+.....+...+ -...+...|+++ ....|.+|..... +..+++... ..+.+++|. ++.++.+.
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~-- 155 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGT-- 155 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEe--
Confidence 222333444444 122333444444 4458888877653 345555444 678899998 66777776
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccc----------cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVE----------AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
.+...+.|+.++.......... ......+..-+++.+|++. ++.-.+.+..+. ... ...+
T Consensus 156 ------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~-~~r-~~~i 225 (275)
T PF00780_consen 156 ------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGE-PSR-KSTI 225 (275)
T ss_pred ------CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCC-cCc-ccEE
Confidence 4668889998654332221111 1112223333345555542 333333344332 111 0111
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY 412 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 412 (442)
.- ...+..+++ ...||++...++ |.||++.++++++.+...
T Consensus 226 ~W---~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 226 QW---SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred Ec---CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 11 123455555 345787777654 999999999999988753
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.67 E-value=1.2e-05 Score=75.62 Aligned_cols=177 Identities=14% Similarity=0.025 Sum_probs=111.2
Q ss_pred CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEee---CC-CcEEEEECCCCceEEEeccCCCCEeEEEEeeCC
Q 013475 211 DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGG---SK-GLLRLWDIRTGKVAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (442)
.+.+.+.|.++.+...++........+.++++| .++++.+ +. ..+...+..+...+..+... .+ -.+.++|
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdG 288 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAG 288 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCC
Confidence 466778888888888888767777888999997 4554443 22 23333333322222222111 01 1334578
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCC----CcccceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCccccc
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSR----EVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~ 361 (442)
++...+ ++.|.+.|.++ +..+.. ..........+.++|||+++++++ .++.+.++|+........
T Consensus 289 K~~~V~---------gn~V~VID~~t~~~~~~~v~~-yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 289 KFKTIG---------GSKVPVVDGRKAANAGSALTR-YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred CEEEEC---------CCEEEEEECCccccCCcceEE-EEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 776652 67999999987 222222 223344567799999999988855 589999999987543110
Q ss_pred ----c-e-eEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 362 ----F-K-RYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 362 ----~-~-~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
. . ..............+|..+|+...+-.-|..|..||+.+
T Consensus 359 ~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0 0 011111223356789999998888888899999999876
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1e-05 Score=75.32 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=99.2
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
..|.--+++.. +++++.|+.-|.+++|+-..+ ........+-.+.+..+..+++..++|.|+..|.|.++-+..+...
T Consensus 34 ~~v~lTc~dst-~~~l~~GsS~G~lyl~~R~~~-~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDAT-EEYLAMGSSAGSVYLYNRHTG-EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecC-CceEEEecccceEEEEecCch-hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34444445555 889999999999999996433 2222233334566677788888889999999999999988764321
Q ss_pred -----Eeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC----ceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 226 -----QSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG----KVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 226 -----~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
.... |+..|++++|++++ ..+++|...|+|.+-.+... ...+.+....+.|..+.+. ++..|++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 1111 67889999999996 88999999999999888762 1223334445677777765 344444433
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.66 E-value=6.2e-06 Score=75.94 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=125.5
Q ss_pred eeccCCCceeEEEeCCCCCEEEEEec---C-CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc--EEE
Q 013475 185 VLNFHSAAVNDVKWSQQGLFVLSCGY---D-CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL--LRL 258 (442)
Q Consensus 185 ~~~~h~~~v~~l~~~~~~~~l~s~~~---d-~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i 258 (442)
.+..-...+..-+|+++++.++.... . ..+.++++++++........+.-...+|+|||..++++...||. |++
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 33334556777789998887665532 2 45999999999888877777777788999999888888888875 667
Q ss_pred EECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC--eEEEEeCCCCcccceeeccccceeeeEEecCCC
Q 013475 259 WDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN--SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (442)
+|+..++ +..+....+.-..=.|+|||++++..++. .| .|.++|...... ..+.. .......-.++|+|
T Consensus 267 ~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr------~G~p~I~~~~~~g~~~-~riT~-~~~~~~~p~~SpdG 337 (425)
T COG0823 267 MDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDR------GGRPQIYLYDLEGSQV-TRLTF-SGGGNSNPVWSPDG 337 (425)
T ss_pred EcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCC------CCCcceEEECCCCCce-eEeec-cCCCCcCccCCCCC
Confidence 7877665 33354444444467899999999988762 34 455666665543 22222 22233378899999
Q ss_pred CeeEEEeCC-Ce--EEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC
Q 013475 337 PYFVAQSNG-NY--IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 337 ~~l~~~~~~-~~--i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
++++..+.. +. |.+++...+... ..+.. ......-.|.++|+.|+..+.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~---~~lt~---~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKI---RILTS---TYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcE---EEccc---cccCCCCCcCCCCceEEEecc
Confidence 999886642 33 666666554431 11111 112224578888888876544
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.5e-06 Score=79.42 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=100.0
Q ss_pred CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC-----CCEEEEEecCCcEEEEECC---CCcEEEee
Q 013475 157 HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ-----GLFVLSCGYDCSSRLVDVE---KGIETQSF 228 (442)
Q Consensus 157 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s~~~d~~v~vwd~~---~~~~~~~~ 228 (442)
.|.+++||+.||+|.|-.+.+........+ ..++.+++++|+ .+.+++|+.-| +.++.-. +...+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 389999999999999999966644444444 478999999997 57899999888 7776532 22222222
Q ss_pred eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE------eEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 229 REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI------LDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 229 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
...+.|.++.|. +++++-++.+| |++||+.+++.+..+......+ ..+.|.++.+ |+.|= .
T Consensus 158 ~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW--------~ 224 (846)
T KOG2066|consen 158 EGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW--------G 224 (846)
T ss_pred cCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec--------C
Confidence 378899999997 37888887766 9999999988877665433332 3577775554 44443 4
Q ss_pred CeEEEEeCCC
Q 013475 303 NSIVVWDVSR 312 (442)
Q Consensus 303 ~~i~iwd~~~ 312 (442)
.+|+|..++.
T Consensus 225 d~v~i~~I~~ 234 (846)
T KOG2066|consen 225 DSVKICSIKK 234 (846)
T ss_pred CeEEEEEEec
Confidence 6888888873
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.64 E-value=2.1e-05 Score=71.76 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=142.1
Q ss_pred eCCCCCEEEEe---------cCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 154 SPTHAHLLASA---------GMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 154 s~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
||| +++++.. +..+.+.|||+.++ ....... ....+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d-~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPD-GKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TT-SSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCC-CCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 567 6665553 23467889998554 3222222 257889999999999999876 78899999888744
Q ss_pred EEeeeCC------------------cceEEEEEccCCCCEEEEeeCCCc-------------------------------
Q 013475 225 TQSFREE------------------LAVRVVKFHPENSNLFLSGGSKGL------------------------------- 255 (442)
Q Consensus 225 ~~~~~~~------------------~~v~~~~~~~~~~~~l~~~~~dg~------------------------------- 255 (442)
.+..... ..-..+-|+||+..+++.--++..
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 4332211 123568899997444433332322
Q ss_pred ----EEEEECCCCceEE-E-e---ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccce
Q 013475 256 ----LRLWDIRTGKVAH-E-Y---IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYT 326 (442)
Q Consensus 256 ----i~iwd~~~~~~~~-~-~---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 326 (442)
+.++|+.+++... . . .....-+..+.|.++++.|+..-. .+......+.++|..++.............
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~--nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL--NRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE--ETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc--ccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 3334444443211 1 1 122345778999999884443321 111224567777887654432222222222
Q ss_pred ---eeeEEec-CCCC-eeEEEeCCC--eEEEeeCCCCcccccceeEeecccccCcE-EEEEccCCCEEE-EecC----CC
Q 013475 327 ---CPCVRHH-PFDP-YFVAQSNGN--YIAIFSSTPPFRLDKFKRYESHGVSGFPI-KCSFSLDGEKLV-SGSS----DG 393 (442)
Q Consensus 327 ---~~~~~~~-~~~~-~l~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~-~g~~----dg 393 (442)
.....+. +++. ++.....+| .|++++..++... .+ ....-.|. -+.++++++.|+ ++.. ..
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~----~l--T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR----QL--TSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE----ES--S-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee----cc--ccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 2234443 5555 444455555 4566666655311 11 11112243 367888876654 4444 23
Q ss_pred cEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 394 SIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 394 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
.|+.-++..+..+..+.........+.|+|++..++.+++.-
T Consensus 308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 466667662333455554333336899999996666666543
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=1.3e-05 Score=79.19 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=140.8
Q ss_pred CCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 190 SAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 190 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
...|.++.|..+...++.+..+|.|.+-|.++......-.....|.+++|+||+ ..++..+..+++.+-+ .+..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe-ccccchhc
Confidence 368999999999999999999999999999887666555578899999999996 7777777666665543 33333222
Q ss_pred ecc-----CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE---
Q 013475 270 YIQ-----SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA--- 341 (442)
Q Consensus 270 ~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 341 (442)
... ..+....+-|-.....|- |+ .|.....+........... .....-..+.|--+|+++++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfr-gs--------~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFR-GS--------EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred cccccccccccccceecccccceeee-cc--------hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEE
Confidence 111 112222333322211111 11 1222222211111100000 11223456899999999988
Q ss_pred --EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe---cCCCcEEEEecCC---ceeeEeeeccC
Q 013475 342 --QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG---SSDGSIYFYNCRS---SELERKIKAYE 413 (442)
Q Consensus 342 --~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g---~~dg~i~iwd~~~---~~~~~~~~~~~ 413 (442)
....+.|++||.+..... .. ....+.-.+++|-|.|..+++- .+|+.|.+|.-+. |+....+....
T Consensus 216 ~~~~~~RkirV~drEg~Lns--~s----e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREGALNS--TS----EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred eccCCceeEEEecccchhhc--cc----CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 333389999998832211 11 1111223478999999999875 3566899998432 22222333334
Q ss_pred CceeEEEEcCCCCCEEEE---eeCCCcEEEc
Q 013475 414 QACIDVAFHPILPNIIGS---CSWNGDVSVY 441 (442)
Q Consensus 414 ~~v~~~~~~p~~~~~l~s---~~~dg~i~iw 441 (442)
..|..++|+.++ .+|+. ......|++|
T Consensus 290 ~~ve~L~Wns~s-diLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 290 KEVEELAWNSNS-DILAVVTSNLENSLVQLW 319 (1265)
T ss_pred cchheeeecCCC-CceeeeecccccceEEEE
Confidence 559999999998 68887 4445558888
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.63 E-value=5.6e-05 Score=72.05 Aligned_cols=257 Identities=14% Similarity=0.106 Sum_probs=145.9
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCCc--eeEEEeCC--CCCEEEEEe---------cCCcEEEEECCCCcEE
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAA--VNDVKWSQ--QGLFVLSCG---------YDCSSRLVDVEKGIET 225 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~~~--~~~~l~s~~---------~d~~v~vwd~~~~~~~ 225 (442)
..++.++.+|.|.-+|.+++ +.+..+...... -..+.-+| .+..++.++ .++.|..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 46777888999999998665 444444322110 01111122 123455543 3678999999999998
Q ss_pred EeeeCC-cc--------------------e-EEEEEccCCCCEEEEeeCCC------------------cEEEEECCCCc
Q 013475 226 QSFREE-LA--------------------V-RVVKFHPENSNLFLSGGSKG------------------LLRLWDIRTGK 265 (442)
Q Consensus 226 ~~~~~~-~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~ 265 (442)
..++.. .. + ....+.+.+ .+++.++.++ .|.-+|.++++
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 887632 10 0 123344433 5666676554 79999999999
Q ss_pred eEEEeccCCCCE------eEEEEe----eCCC---EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEe
Q 013475 266 VAHEYIQSLGPI------LDVEFT----INGK---QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRH 332 (442)
Q Consensus 266 ~~~~~~~~~~~i------~~~~~~----~~~~---~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 332 (442)
.+..+....... ....+. -++. .++.++. +|.+...|.++++.+...... ...+..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-------~G~l~ald~~tG~~~W~~~~~----~~~~~~ 336 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-------NGFFYVLDRTTGKLISARPEV----EQPMAY 336 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC-------CceEEEEECCCCcEeeEeEee----cccccc
Confidence 887764321111 001111 1333 5666776 899999999999877665432 111223
Q ss_pred cCCCCeeEEE------------------eCCCeEEEeeCCCCcccccceeEeeccc---ccCcEEEEEccCCCEEEEecC
Q 013475 333 HPFDPYFVAQ------------------SNGNYIAIFSSTPPFRLDKFKRYESHGV---SGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 333 ~~~~~~l~~~------------------~~~~~i~i~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~g~~ 391 (442)
.+ ..+.++ ..++.+.-+|..++..++.......... ......-...-.+.+|++++.
T Consensus 337 ~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~ 414 (488)
T cd00216 337 DP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA 414 (488)
T ss_pred CC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECC
Confidence 33 222221 2357788888888877665432200000 000100111125678999999
Q ss_pred CCcEEEEecCCceeeEeeeccCCceeE--EEEcCCCCCEEEEe
Q 013475 392 DGSIYFYNCRSSELERKIKAYEQACID--VAFHPILPNIIGSC 432 (442)
Q Consensus 392 dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~~p~~~~~l~s~ 432 (442)
||.|+.+|.++|+.+.+++. ...+.. +.+..++..++++.
T Consensus 415 dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 415 DGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred CCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEEEEEEE
Confidence 99999999999999888764 233322 23444553344443
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.61 E-value=0.00017 Score=62.84 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=146.8
Q ss_pred EEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeeccC-C----CceeEEEeCCCCCEEEEEec--CC
Q 013475 150 SINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNFH-S----AAVNDVKWSQQGLFVLSCGY--DC 212 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h-~----~~v~~l~~~~~~~~l~s~~~--d~ 212 (442)
.+..+|+ ++.+++++ ..-.|.+||..+-.......+..- . .....++++.|+++++.... -.
T Consensus 40 ~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 4668999 88777653 234799999865533333333321 1 23345688899999888765 46
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-CCceEEEe----ccCCCCE-eEEEEeeCC
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKVAHEY----IQSLGPI-LDVEFTING 286 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~----~~~~~~i-~~~~~~~~~ 286 (442)
.|.|.|+..++.+..+...+...- -|.++.-|.+-+.||.+.-..+. .|+...+. .....++ ..-.+...+
T Consensus 119 SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 799999999999988875553332 23344568888899999999887 45544222 1222222 233445455
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccce--eecc---------ccceeeeEEecCCCCeeEEEeC--------C--
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSK--QVYV---------EAYTCPCVRHHPFDPYFVAQSN--------G-- 345 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~l~~~~~--------~-- 345 (442)
..++-.+. +|.|+--|+........ .... ..+...-+++++....|.+... +
T Consensus 196 ~~~~F~Sy-------~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 196 GRLYFVSY-------EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp TEEEEEBT-------TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred CeEEEEec-------CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 54544555 89999988877542211 1100 1123455778776655544211 1
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC-EEEE-ecCCCcEEEEecCCceeeEeeecc
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVS-GSSDGSIYFYNCRSSELERKIKAY 412 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~-g~~dg~i~iwd~~~~~~~~~~~~~ 412 (442)
..|-+||+.+..++..+..- ..+.++..+.+.+ +|++ ...++.|.+||..+|+.+.++..-
T Consensus 269 teVWv~D~~t~krv~Ri~l~------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLE------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred eEEEEEECCCCeEEEEEeCC------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 35777888887776544321 2255788888765 5544 456899999999999999988753
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.61 E-value=4.4e-05 Score=72.78 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=149.9
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCC------cee--EEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeC
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSA------AVN--DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE 230 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 230 (442)
..++.++.++.|.-.|..++ +.+..+..... .+. .+... ++..++.++.++.|..+|.++|+.+..+..
T Consensus 62 g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 62 GDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 34666777899999898655 43333332111 010 11111 225788888899999999999999988874
Q ss_pred Ccc------eE-EEEEccCCCCEEEEee---------CCCcEEEEECCCCceEEEeccCCC-------------------
Q 013475 231 ELA------VR-VVKFHPENSNLFLSGG---------SKGLLRLWDIRTGKVAHEYIQSLG------------------- 275 (442)
Q Consensus 231 ~~~------v~-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~------------------- 275 (442)
... +. ...+.. .+++.++ .+|.|..+|..+++.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~---~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK---KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC---CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 332 11 122221 3444443 367899999999998877654211
Q ss_pred -CE-eEEEEeeCCCEEEeccCCC-----------CCcCCCCeEEEEeCCCCcccceeeccccc-----eeeeEEec----
Q 013475 276 -PI-LDVEFTINGKQFVSSSDVS-----------GSNMSENSIVVWDVSREVPLSKQVYVEAY-----TCPCVRHH---- 333 (442)
Q Consensus 276 -~i-~~~~~~~~~~~l~~~~~~~-----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~---- 333 (442)
.| ....+.+.+..++.++... .....++.|.-+|..+++..-+....... ......+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 01 1234444455566665300 00011247999999998877665432210 00000111
Q ss_pred CCCC---eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe------------------cCC
Q 013475 334 PFDP---YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG------------------SSD 392 (442)
Q Consensus 334 ~~~~---~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g------------------~~d 392 (442)
-++. .+++++.++.+..+|..++..++...... ..++.++ ..++.+ ..+
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--------cccccCC--ceEEEccccccccCcccccCCCCCCCc
Confidence 1232 57778889999999999998776543220 1123333 233332 246
Q ss_pred CcEEEEecCCceeeEeeeccC--------Cce--eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 393 GSIYFYNCRSSELERKIKAYE--------QAC--IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 393 g~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.|.-.|+.+|+.+-+..... ... ..+.. .+ .+|+.++.||.|+.+|
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald 422 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFD 422 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEE
Confidence 788888988888776654321 111 11222 23 4777778889887664
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=2.1e-06 Score=81.34 Aligned_cols=109 Identities=13% Similarity=0.271 Sum_probs=88.3
Q ss_pred eEEEeCCCCCEEEEEec----CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 194 NDVKWSQQGLFVLSCGY----DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 194 ~~l~~~~~~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
+-..|+|...+|++++. .|.|.||- ++|++-......-.+++++|+|. ..+|+.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChH-HHHHhhccccceeEEEecCCceeeee
Confidence 44579999889888875 57788874 56665554444555778999998 47888888899999999877666556
Q ss_pred eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 270 YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
...|..+|..+.||++|..++++.. -|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~-------~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDN-------PGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCC-------CceeEEEEee
Confidence 6778999999999999999999998 8999999876
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.58 E-value=4e-05 Score=64.89 Aligned_cols=200 Identities=12% Similarity=0.128 Sum_probs=118.2
Q ss_pred CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC-CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEe
Q 013475 231 ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWD 309 (442)
Q Consensus 231 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 309 (442)
...+..++|+|+...++++....+.|..++. +|+.++++... .+..-.|++..++.++++.-. ++.+.+++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er-------~~~L~~~~ 92 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER-------DQRLYIFT 92 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT-------TTEEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC-------CCcEEEEE
Confidence 4459999999987678888888999999997 57887776543 356788999888877777665 89999999
Q ss_pred CCCCccc------ceee--c--cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC---Ccccccce--eEe-ecccccC
Q 013475 310 VSREVPL------SKQV--Y--VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP---PFRLDKFK--RYE-SHGVSGF 373 (442)
Q Consensus 310 ~~~~~~~------~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~---~~~~~~~~--~~~-~~~~~~~ 373 (442)
+...... ..+. . ........++|.+.+..|+++....-..+|.... ........ .+. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 8442211 1111 1 2334578999999988888888777777776654 11110000 000 0111233
Q ss_pred cEEEEEccC-CCEEEEecCCCcEEEEecCCceeeEeeeccC---------CceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 374 PIKCSFSLD-GEKLVSGSSDGSIYFYNCRSSELERKIKAYE---------QACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 374 v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+..++++|. |.+++.......|.++| .+|+.+..+.-.. ..--.|+|.++| .+.++. .-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEc-CCceEEEe
Confidence 667899984 56777788888999999 5677666554222 246789999998 455554 56655554
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.57 E-value=5.8e-05 Score=68.00 Aligned_cols=215 Identities=17% Similarity=0.232 Sum_probs=128.7
Q ss_pred CcEEEEECCCCcEEEeee--CCcceEEEEEcc---C---CCCEEEEeeC----------CCcEEEEECCCC----ceEEE
Q 013475 212 CSSRLVDVEKGIETQSFR--EELAVRVVKFHP---E---NSNLFLSGGS----------KGLLRLWDIRTG----KVAHE 269 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~---~---~~~~l~~~~~----------dg~i~iwd~~~~----~~~~~ 269 (442)
+.|++.|..+.+.+..+. ....+.+++... + ...+|++|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358899988888777666 455566554432 2 1467777643 288999999884 12221
Q ss_pred e--ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeeccccceeeeEEecCCCCeeEEEeCCC
Q 013475 270 Y--IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN 346 (442)
Q Consensus 270 ~--~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (442)
+ ....++|++++-. ++ +|+.+. ++.|.+|++...+ ....-.......+.++... +.++++|...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--------g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--------GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--------TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--------cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEccc
Confidence 1 2346789988866 44 466666 6899999999887 3333333333344444444 66999999888
Q ss_pred eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC-------c--eeeEeeecc-CCce
Q 013475 347 YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS-------S--ELERKIKAY-EQAC 416 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~-------~--~~~~~~~~~-~~~v 416 (442)
.+.++..+.... .+...........++++.|-.+++.+++++.+|.|.++.... + ++.....-| ...|
T Consensus 150 sv~~~~~~~~~~--~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v 227 (321)
T PF03178_consen 150 SVSLLRYDEENN--KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV 227 (321)
T ss_dssp SEEEEEEETTTE---EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred CEEEEEEEccCC--EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence 888875543211 123333333345678888887778999999999999998762 1 222222222 5677
Q ss_pred eEE---EEcC--CCCC-----EEEEeeCCCcEEE
Q 013475 417 IDV---AFHP--ILPN-----IIGSCSWNGDVSV 440 (442)
Q Consensus 417 ~~~---~~~p--~~~~-----~l~s~~~dg~i~i 440 (442)
+++ .+.| .+.. .++-++.+|.|.+
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 777 5555 2212 3777778998863
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.7e-06 Score=71.33 Aligned_cols=254 Identities=12% Similarity=0.088 Sum_probs=138.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC-CEEEEEecCCcE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG-LFVLSCGYDCSS 214 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~d~~v 214 (442)
+....+.+|...|..++|||.+.-++..++.+..|+|.|+++. ..+..+..+ ..+.+++|.-|. ++|+.|-..|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 4455777899999999999995558889999999999999554 667777766 899999998854 567777779999
Q ss_pred EEEECCCCcEE-Eeee---CCcceEEEEEccCC-----CCEEEEeeCCCcEEEEECCCC--ceEEEec-cCCCCEeEEEE
Q 013475 215 RLVDVEKGIET-QSFR---EELAVRVVKFHPEN-----SNLFLSGGSKGLLRLWDIRTG--KVAHEYI-QSLGPILDVEF 282 (442)
Q Consensus 215 ~vwd~~~~~~~-~~~~---~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~--~~~~~~~-~~~~~i~~~~~ 282 (442)
.|||++..+-. ..+. ...+|..++..+-+ +.+++....+ +..|++.-. .....+. +..+...++++
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 99999875322 2221 23344444433221 1334433332 556655422 1111111 22455666666
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEE-EeCCCCcccceeeccc-c------ceeeeEEecCCCCeeEE-EeCCCeEEEeeC
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVV-WDVSREVPLSKQVYVE-A------YTCPCVRHHPFDPYFVA-QSNGNYIAIFSS 353 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~i-wd~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~ 353 (442)
.+..+.++........-..-..|.. -|...+..+....... + ..-..+.-.++.++++. +...+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 6655555554431000000001111 1112222222111111 0 01112223344455544 566789999999
Q ss_pred CCCcccccceeEeecccccCcEEEEEcc-CC-CEEEEecCCCcEEEEecC
Q 013475 354 TPPFRLDKFKRYESHGVSGFPIKCSFSL-DG-EKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g-~~l~~g~~dg~i~iwd~~ 401 (442)
........+.. ...+.+++... +| .||++- .|..++||..+
T Consensus 419 ~s~evvQ~l~~------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSFEVVQTLAL------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred chhheeeeccc------CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 88765543322 13344444333 33 455544 45668888654
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.56 E-value=2.1e-05 Score=72.68 Aligned_cols=227 Identities=13% Similarity=0.088 Sum_probs=116.9
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
+.+....-....+.++|+ |++++.+ .||...|+.. ...... ..+.-....|..++ .+++-...++|.|+.
T Consensus 26 k~lg~~~~~p~~ls~npn-gr~v~V~-g~geY~iyt~--~~~r~k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPN-GRFVLVC-GDGEYEIYTA--LAWRNK-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TT-SSEEEEE-ETTEEEEEET--TTTEEE-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCC-CCEEEEE-cCCEEEEEEc--cCCccc-----ccCceeEEEEecCc-cEEEEECCCeEEEEE
Confidence 334444556789999999 8888774 4788888883 211211 12344578898855 466666688899974
Q ss_pred CCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 219 VEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
--+.+....++....+..+-. | .+|...+.+ .|.+||+.+++.++++... +|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp TTEE-TT-----SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred cCccccceEEcCCcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 333333344554444554443 5 566665554 8999999999999998754 489999999999999998
Q ss_pred cCCCCeEEEEeCCCC---------cccceeeccc-cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475 299 NMSENSIVVWDVSRE---------VPLSKQVYVE-AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
+..+.|++.... ..-......+ ...|.+..|..+ .++-.+.. .++.+-...... +..+
T Consensus 164 ---~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~---i~~l--- 231 (443)
T PF04053_consen 164 ---KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLVNGETGI---IAHL--- 231 (443)
T ss_dssp ---S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEETTEEEE---EEE----
T ss_pred ---CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcce---EEEc---
Confidence 578888876543 0001111122 456777888766 44444443 555532111100 1111
Q ss_pred ccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
...+.-+.+.++.+.++....|+.|..+.+.
T Consensus 232 --d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 232 --DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred --CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1223445566666777777788888777665
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00029 Score=64.81 Aligned_cols=265 Identities=12% Similarity=0.147 Sum_probs=170.2
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEE-EecCCcEEEEECCCCcEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLS-CGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~ 225 (442)
....+...+++.+..++-.....+.+.+. ...........-...-..+++++.+..++. ...++.|.+.|..+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~--~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA--TSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc--ccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 45567777873243333333334555444 211111111111133457788887775444 444689999998888888
Q ss_pred EeeeCCcceEEEEEccCCCCEEEEee--CCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 226 QSFREELAVRVVKFHPENSNLFLSGG--SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
...........+++++++..+.++-. .++.+.+.|-.+++.+........+ ..++++|+|..++.... .++
T Consensus 110 ~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~------~~~ 182 (381)
T COG3391 110 GSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS------DDN 182 (381)
T ss_pred eEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec------CCC
Confidence 88876668889999999856655555 3789999999988888776554445 88999999997666652 289
Q ss_pred eEEEEeCCCCcccc-ee--eccccceeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccceeEeecccccCcEEE
Q 013475 304 SIVVWDVSREVPLS-KQ--VYVEAYTCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 304 ~i~iwd~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
.|.+.|........ .. .......-..+.+.+++.++.+.... +.+...|............ .... ....+
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~---~~~~-~~~~v 258 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP---VGSG-APRGV 258 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc---cccC-CCCce
Confidence 99999977655442 10 12222344668899999977665444 5888888887654322110 1111 34568
Q ss_pred EEccCCCEEEEecC-CCcEEEEecCCceeeEeeeccC---CceeEEEEcCC
Q 013475 378 SFSLDGEKLVSGSS-DGSIYFYNCRSSELERKIKAYE---QACIDVAFHPI 424 (442)
Q Consensus 378 ~~s~~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~ 424 (442)
.++|+|+++.+... .+.+.+.|..+......+.... ..+..+++.+.
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 99999999988844 4889999988877766654332 23444554443
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.53 E-value=5e-05 Score=69.34 Aligned_cols=240 Identities=17% Similarity=0.150 Sum_probs=134.4
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-----------------------------------------ceeee
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-----------------------------------------KLARV 185 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------------------------~~~~~ 185 (442)
.|+++.|+++ ..-|+.|...|.|.||.+...+. .....
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999 56688888899999998742211 01112
Q ss_pred eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee---------CCcceEEEEEcc-----CC--CCEEEE
Q 013475 186 LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR---------EELAVRVVKFHP-----EN--SNLFLS 249 (442)
Q Consensus 186 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------~~~~v~~~~~~~-----~~--~~~l~~ 249 (442)
+....++|++++.+. =-+++.|..+|.+.|.|++....+..-. ....++++.|.- |+ .-++++
T Consensus 82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 233468899999974 4489999999999999998877766533 233577888852 11 246889
Q ss_pred eeCCCcEEEEECC-C--Cce----EEEeccCCCCEeEEEEe-eC---------------------CCEEEeccCCCCCcC
Q 013475 250 GGSKGLLRLWDIR-T--GKV----AHEYIQSLGPILDVEFT-IN---------------------GKQFVSSSDVSGSNM 300 (442)
Q Consensus 250 ~~~dg~i~iwd~~-~--~~~----~~~~~~~~~~i~~~~~~-~~---------------------~~~l~~~~~~~~~~~ 300 (442)
|.+.|.+.+|.+. . +.. ......+.++|..+..- .+ ..++++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS------- 233 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS------- 233 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--------
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-------
Confidence 9999999999875 1 211 12222455666666532 22 12555555
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEe-----cCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRH-----HPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
+..++++...+.+...+.. .....+..+.+ ...+..|++-..+|.+++|.+-....+..+..... .....+.
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~-~d~~~~~ 310 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP-LDSRRLS 310 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc-ccccccc
Confidence 7899999998877655544 33234444444 23567788899999999999987655533322110 1112244
Q ss_pred EEEEccCCCEEEEecCCCcEEEEe
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
...++++|..++-.+.. .+.++.
T Consensus 311 ~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 311 SSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp T-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred ccEECCCCCEEEEeCcc-cEEEEE
Confidence 56788888877665432 344443
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=1.2e-05 Score=73.64 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=83.0
Q ss_pred CCceeEEEeCC-CCCEEEEEe----cCCc----EEEEECCCCcE----EEeeeCCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 190 SAAVNDVKWSQ-QGLFVLSCG----YDCS----SRLVDVEKGIE----TQSFREELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 190 ~~~v~~l~~~~-~~~~l~s~~----~d~~----v~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
+....++.|+. +...+.+.. .+|. -.+|++..++. +..+.....+.+++++|+. ..++.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCeE
Confidence 34456777876 445555542 2443 34566655432 2233478899999999995 889999999999
Q ss_pred EEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 257 RLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
.+||...+... +....-..+.++|+|+|..+++++. .|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~-------qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSE-------QGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcC-------CceEEEEEeecCc
Confidence 99998766332 3333456788999999999999998 8999999987543
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=6.4e-06 Score=77.31 Aligned_cols=173 Identities=10% Similarity=0.021 Sum_probs=106.0
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC----cEEEEECCCCcEEEeeeCCcceEEEEEccC
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC----SSRLVDVEKGIETQSFREELAVRVVKFHPE 242 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 242 (442)
.+.+.+.|.++ .+....+. -.+....++++++|+++++.+.+. ++..-+..+...+..|.-.. + -++.++
T Consensus 214 ~~~vSvID~et--meV~~qV~-Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-i--ea~vkd 287 (635)
T PRK02888 214 RSLFTAVDAET--MEVAWQVM-VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-I--EEAVKA 287 (635)
T ss_pred eEEEEEEECcc--ceEEEEEE-eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-H--HHhhhC
Confidence 45566666633 34444443 233556788999999998886422 23333322222222221110 0 023445
Q ss_pred CCCEEEEeeCCCcEEEEECCC----C-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc
Q 013475 243 NSNLFLSGGSKGLLRLWDIRT----G-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS 317 (442)
Q Consensus 243 ~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 317 (442)
| ++... .++.|.++|.++ + +.+..+. -......+.++|||+++++++. .+.+|.++|+.+.+...
T Consensus 288 G-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVank------lS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 288 G-KFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGK------LSPTVTVIDVRKLDDLF 357 (635)
T ss_pred C-CEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCC------CCCcEEEEEChhhhhhh
Confidence 5 44444 256899999988 3 4444443 3355688999999999988876 38999999998855311
Q ss_pred e----------eeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 318 K----------QVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 318 ~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
. -...-...-...+|.++|..+.+..-|..|..|++..
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0 0011123345678899999888899999999999876
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=6.5e-06 Score=75.39 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=85.0
Q ss_pred cceEEEEeeCCCCCEEEEe----cCCCc----EEEEEcccCCccee--eeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASA----GMDQS----ICIWNVWSRDQKLA--RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~----~~dg~----i~iwd~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
....++.||-...+.+.|. +.+|. -.+|++...+.+.+ ..+. ....|.+++++|+...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip-L~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP-LPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe-cCCcceEEecCcccceEEEEecCCeEE
Confidence 3446777887546666554 33443 34666643322222 2233 678999999999999999999999999
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG 264 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 264 (442)
+||...+... ..+..-.++.++|||+| .+|++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~-~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL-LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee-eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 9999877433 33566778999999996 89999999999999998644
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=0.00026 Score=58.28 Aligned_cols=143 Identities=12% Similarity=0.040 Sum_probs=100.5
Q ss_pred CCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEE
Q 013475 202 GLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVE 281 (442)
Q Consensus 202 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 281 (442)
..+++.|+..+.+.-.|..+|+.+........+.+-+..- | ++++.|...|.+++.+.++|.....+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv-g-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV-G-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE-C-CEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678888889999999999999887776666666555543 3 6799999999999999999988777754432222345
Q ss_pred EeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 282 FTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
..+++..+..++. |++.+..|.++...+.+...... ...+-...+....|.++...|.+.-.+.+
T Consensus 101 ~d~~~glIycgsh-------d~~~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSH-------DGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecC-------CCcEEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceEEEEccC
Confidence 5778999999998 99999999999887766444332 22334445533444444455554444433
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00067 Score=62.47 Aligned_cols=240 Identities=15% Similarity=0.136 Sum_probs=154.4
Q ss_pred ceeEEEeCCCCCEEEEEec-CCcEEEEECCCCcEEEeeeCC-cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 192 AVNDVKWSQQGLFVLSCGY-DCSSRLVDVEKGIETQSFREE-LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
....+...+++..+..... ...+...+............. .....+.+++.+.+.++....+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 5567788888755555443 224555555522222222222 45567888888866777777788999999887777666
Q ss_pred eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe-CCCeE
Q 013475 270 YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYI 348 (442)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i 348 (442)
..... ....+.++++++.+..+.... .++++.+.|-.+.+..... .....+ ..+++.|++..+.+.. .++.+
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~~~~~~-~vG~~P-~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNKVTATI-PVGNTP-TGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCeEEEEE-ecCCCc-ceEEECCCCCeEEEEecCCCeE
Confidence 65443 457899999998777665410 1688999999888877763 333233 8899999999666654 78999
Q ss_pred EEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC---CcEEEEecCCceeeEeeeccCC-ceeEEEEcCC
Q 013475 349 AIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD---GSIYFYNCRSSELERKIKAYEQ-ACIDVAFHPI 424 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~ 424 (442)
.++|........ -..............+.++++|.++++.... +.+.+.|..++.....-..-.. ....+..+|+
T Consensus 185 ~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~ 263 (381)
T COG3391 185 SVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPA 263 (381)
T ss_pred EEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCC
Confidence 999976654331 0100011222345678999999977665443 5899999988877665221122 5667889999
Q ss_pred CCCEEEEe-eCCCcEEE
Q 013475 425 LPNIIGSC-SWNGDVSV 440 (442)
Q Consensus 425 ~~~~l~s~-~~dg~i~i 440 (442)
+ ..+... +..+.+.+
T Consensus 264 g-~~~yv~~~~~~~V~v 279 (381)
T COG3391 264 G-KAAYVANSQGGTVSV 279 (381)
T ss_pred C-CEEEEEecCCCeEEE
Confidence 8 454444 33344443
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.44 E-value=1.6e-05 Score=73.26 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=122.0
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEe---cCC-CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASA---GMD-QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG 209 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~---~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 209 (442)
.+.....+..-...+..-+|+++ ++.++.. ... ..+.+++++++....+..+.++. ..-+|+|||++|+.+.
T Consensus 181 dg~~~~~l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~ 256 (425)
T COG0823 181 DGYNQQKLTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSS 256 (425)
T ss_pred CCcceeEecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEE
Confidence 35556666666778888899999 5544333 222 35999999877666666666554 4568999999888765
Q ss_pred c-CC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc--EEEEECCCCceEEEeccCCCCEeEEEEee
Q 013475 210 Y-DC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL--LRLWDIRTGKVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 210 ~-d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 284 (442)
. || .|.+.|+..+...+.....+.-..-.|+|+|..++++.+..|. |.++|.+.+.. ..+....+.-..-.|+|
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC
Confidence 4 44 4667788877744422333444467899999777777777775 66666655543 33333323323678999
Q ss_pred CCCEEEeccCCCCCcCCCCe--EEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE
Q 013475 285 NGKQFVSSSDVSGSNMSENS--IVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (442)
||++|+..+. .+|. |.+.|+.++.. ............-.+.+++..++..
T Consensus 336 dG~~i~~~~~------~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 336 DGDKIVFESS------SGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCEEEEEec------cCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEe
Confidence 9999998874 1233 66666655443 1111222233344556666655543
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=6.1e-06 Score=78.28 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=142.5
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
+++++|+|. .-.|+.|-.-|.+.+|...+ .+.......|..+|..+.|+++|..|+++..-|.|.+|....-..++.
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~~~--~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKTNT--TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEecCC--ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 466999999 88899999999999999733 355555566999999999999999999999999999998874322222
Q ss_pred ---eeC--Ccce--EEEEEccCCCCE-----EEEeeCCCcEE-EEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 228 ---FRE--ELAV--RVVKFHPENSNL-----FLSGGSKGLLR-LWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 228 ---~~~--~~~v--~~~~~~~~~~~~-----l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
++| ...+ .|...++++... .++.+.+..+- .++.+.....+... +. -.++|..|+.++.
T Consensus 139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~ 210 (1416)
T KOG3617|consen 139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGK 210 (1416)
T ss_pred chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcC
Confidence 222 2333 344445553211 22333333222 44433211111111 11 1357777777777
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----------------------------
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG----------------------------- 345 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------- 345 (442)
+|+|+..|-..... ....... ...+.|.+....+++...+
T Consensus 211 -------~GtVyyvdq~g~~~-~V~k~dS---~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Ggr 279 (1416)
T KOG3617|consen 211 -------SGTVYYVDQNGRQR-TVHKLDS---EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGR 279 (1416)
T ss_pred -------CceEEEEcCCCcEE-EEEEccc---hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCc
Confidence 88888877543221 1100000 0111222222222222222
Q ss_pred -CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec-CC---c---eeeEeeec---cCC
Q 013475 346 -NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC-RS---S---ELERKIKA---YEQ 414 (442)
Q Consensus 346 -~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~-~~---~---~~~~~~~~---~~~ 414 (442)
|.|.+-...+ .+.+-.++ +......+++++++..+..|..|...|.+.+|-- .+ | +-...+.+ ..+
T Consensus 280 qGgiA~sEssG--vLr~~eKy-g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g 356 (1416)
T KOG3617|consen 280 QGGIACSESSG--VLRKSEKY-GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLG 356 (1416)
T ss_pred cCccccccccc--cccCCcch-hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhcc
Confidence 2222211111 00000111 1123345889999999999999999999999953 22 1 22233332 356
Q ss_pred ceeEEEEcCCC
Q 013475 415 ACIDVAFHPIL 425 (442)
Q Consensus 415 ~v~~~~~~p~~ 425 (442)
.|+.+.|.|-.
T Consensus 357 ~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 357 KISLIRWGPIK 367 (1416)
T ss_pred ceEEEEecccc
Confidence 89999999976
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=0.00063 Score=59.90 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=137.4
Q ss_pred EeCCCCCEEEEE-ecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc---
Q 013475 197 KWSQQGLFVLSC-GYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ--- 272 (442)
Q Consensus 197 ~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 272 (442)
.|.++...|+-+ -..+.|.-|+..+++. ..+.....+.++.....+ ..|+++.. .+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCC-CeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 566766644444 3477888898886643 344444445555544443 44554432 467777765554333211
Q ss_pred --CCCCEeEEEEeeCCCEEEeccC---C-CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC-C
Q 013475 273 --SLGPILDVEFTINGKQFVSSSD---V-SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN-G 345 (442)
Q Consensus 273 --~~~~i~~~~~~~~~~~l~~~~~---~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 345 (442)
.....+.+...++|.+.++... . ......-|.|+.+|. .+ ...+....+-.....++|+|+++.+..+.. .
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1235577888999987776554 1 111112344444443 22 223333333445678999999987766554 5
Q ss_pred CeEEEeeCCC-Cccc-ccceeEeecccccCcEEEEEccCCCEEEEecCCC-cEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 346 NYIAIFSSTP-PFRL-DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG-SIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 346 ~~i~i~~~~~-~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
+.|.-|+... .... ............+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+.-....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 8888888763 1111 1111111222345566788888998886555554 89999988 99999888776888999995
Q ss_pred C-CCCCEEEEeeCC
Q 013475 423 P-ILPNIIGSCSWN 435 (442)
Q Consensus 423 p-~~~~~l~s~~~d 435 (442)
- +...+++|+...
T Consensus 264 G~~~~~L~iTs~~~ 277 (307)
T COG3386 264 GPDLNTLYITSARS 277 (307)
T ss_pred CCCcCEEEEEecCC
Confidence 4 443566666544
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.40 E-value=0.00042 Score=64.20 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=104.0
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-------ccCCCCEeEEEEee
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-------IQSLGPILDVEFTI 284 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~ 284 (442)
.|.||+.. |+.+..+. ..+.+.++.|..+ ..|++-..||.+++||+. |+....+ .-....+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 36666643 34444444 3478999999886 455667789999999986 3331111 11112222223333
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEe-CCCCcccceeecc-------ccc-eee-eEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWD-VSREVPLSKQVYV-------EAY-TCP-CVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd-~~~~~~~~~~~~~-------~~~-~~~-~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
+|-.+++. ++.+.+.+ ............. +.. ... ...++.+....+....++.+.+.+..
T Consensus 138 ~GivvLt~---------~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 138 NGIVVLTG---------NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDEN 208 (410)
T ss_pred CCEEEECC---------CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcc
Confidence 55444443 34444432 2222111111000 000 000 02344455555555566666644433
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-CCceeEEEEcCCC
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-EQACIDVAFHPIL 425 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~ 425 (442)
.... -...+.+..+++||+|++||.-..+|.+.|.+.+-.+.+.++... ......+.|.-+.
T Consensus 209 ~~~~---------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 209 SFKQ---------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred cccc---------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 2111 112256889999999999999999999999987666666666543 3456677777654
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.0015 Score=57.13 Aligned_cols=258 Identities=11% Similarity=0.040 Sum_probs=147.9
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec----------CCcEEEEECCCCcEEEeeeCCc--c--
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY----------DCSSRLVDVEKGIETQSFREEL--A-- 233 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~--~-- 233 (442)
+.+.|+|.++ .+.+-.+. .+-.-.+..+|+++.+++++. .-.|.+||..+-.....+.-.. .
T Consensus 17 ~rv~viD~d~--~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADS--GKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTT--TEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCC--CcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4788888744 35555554 233445678999999987643 3469999999998887766211 1
Q ss_pred ----eEEEEEccCCCCEEEEeeC--CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEE
Q 013475 234 ----VRVVKFHPENSNLFLSGGS--KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVV 307 (442)
Q Consensus 234 ----v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 307 (442)
...++++.+| +++++... -..|.|.|+..++.+.++... .+..+--+.+.. |.+.+. ||.+.-
T Consensus 93 ~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~~-F~~lC~-------DGsl~~ 161 (342)
T PF06433_consen 93 VVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNRG-FSMLCG-------DGSLLT 161 (342)
T ss_dssp BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETTE-EEEEET-------TSCEEE
T ss_pred ecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCCc-eEEEec-------CCceEE
Confidence 1235667775 44444322 346888888888877776543 122222233444 444444 999999
Q ss_pred EeCCC-Ccccceee---ccccc-eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc--------cccCc
Q 013475 308 WDVSR-EVPLSKQV---YVEAY-TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG--------VSGFP 374 (442)
Q Consensus 308 wd~~~-~~~~~~~~---~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--------~~~~v 374 (442)
..+.. ++...+.. ..... ....-.+...+..++.-+..|.|+-.++....... ........ ..+.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccCcCCcce
Confidence 98884 33321111 11111 11222333444556667788888888877654221 11111000 00112
Q ss_pred EEEEEccCCCEEEEecC---CC-------cEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEE-eeCCCcEEEcC
Q 013475 375 IKCSFSLDGEKLVSGSS---DG-------SIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGS-CSWNGDVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~---dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg~i~iwd 442 (442)
.-+++++..+.|++--. +| .|.++|+.+++.+.++.. ...+.+|..+.+..-+|.+ ...++.|.|||
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 23677775555554321 22 388889999999999875 4568899999887445654 44688999987
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.35 E-value=0.001 Score=56.42 Aligned_cols=200 Identities=12% Similarity=0.174 Sum_probs=110.9
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccC-CCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFH-SAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
+.+.+-...+..++|+|+++.++++....+.|...+. . ++.+..+... .+..-.|++..++.++++--.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--D-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--C-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 3455666779999999986777788888888877775 2 3445544422 3567889998888777766568999999
Q ss_pred ECCCCc------EEEeee------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC---CceEEE--e------ccCC
Q 013475 218 DVEKGI------ETQSFR------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT---GKVAHE--Y------IQSL 274 (442)
Q Consensus 218 d~~~~~------~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~--~------~~~~ 274 (442)
++.... ....+. +...+..++|.+.+ +.|+.+-+..-..+|.++. ...+.. . ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 884321 112222 34568999999986 4555556665666666653 211111 1 1233
Q ss_pred CCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc--------cceeeeEEecCCCCeeEEEeCC
Q 013475 275 GPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE--------AYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 275 ~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
..+.++.++|.. ++++.+.. +..|..+| ..++.+....... -.....+++.++|.++++. .-
T Consensus 171 ~d~S~l~~~p~t~~lliLS~e-------s~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-Ep 241 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDE-------SRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EP 241 (248)
T ss_dssp S---EEEEETTTTEEEEEETT-------TTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TT
T ss_pred ccccceEEcCCCCeEEEEECC-------CCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CC
Confidence 467889999865 44555554 78888888 4455444433322 1246778999988655554 55
Q ss_pred CeEEEe
Q 013475 346 NYIAIF 351 (442)
Q Consensus 346 ~~i~i~ 351 (442)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555554
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.34 E-value=0.0001 Score=67.32 Aligned_cols=229 Identities=16% Similarity=0.140 Sum_probs=126.4
Q ss_pred CCCCCEEEEEe---------cCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 199 SQQGLFVLSCG---------YDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 199 ~~~~~~l~s~~---------~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
|||+++++... ..+.+.|||+++++..........+....|+|+| +.++... ++.|+++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777777642 2467999999998766555556778899999997 5555544 46899999877744322
Q ss_pred eccC-----------------CCCEeEEEEeeCCCEEEeccCC-----------------------------CCCcCCCC
Q 013475 270 YIQS-----------------LGPILDVEFTINGKQFVSSSDV-----------------------------SGSNMSEN 303 (442)
Q Consensus 270 ~~~~-----------------~~~i~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~d~ 303 (442)
-... .+.-..+-||||+++|+..... .+.....-
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2111 1223568899999998865430 00110112
Q ss_pred eEEEEeCCCCcccceee----ccccceeeeEEecCCCCeeEE--EeCC---CeEEEeeCCCCcccccceeEeecccccCc
Q 013475 304 SIVVWDVSREVPLSKQV----YVEAYTCPCVRHHPFDPYFVA--QSNG---NYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~--~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
.+.++|+.+++...... ......+..+.|.+++..+++ .+.+ -.+.++|..++....... ....+++
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~----e~~~~Wv 234 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE----ETSDGWV 234 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE----EESSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE----ecCCcce
Confidence 45567776665432111 234556788999999884444 2222 245566665543322211 1112222
Q ss_pred ---EEEEEc-cCCC-EEEEecCCCc--EEEEecCCceeeEeeeccCCceeE-EEEcCCCCCEEEEeeC
Q 013475 375 ---IKCSFS-LDGE-KLVSGSSDGS--IYFYNCRSSELERKIKAYEQACID-VAFHPILPNIIGSCSW 434 (442)
Q Consensus 375 ---~~~~~s-~~g~-~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~ 434 (442)
....|. +++. +|.....+|. |++++...+. ...+....-.|.. +.|++++..+++++..
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 244554 5554 4445556675 5555655555 3455544556755 6788887556666654
No 352
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.31 E-value=0.0014 Score=55.26 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=121.3
Q ss_pred cEEEeeeCCc--ceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCC-CCEeEEEEeeCCCEEEeccCCCC
Q 013475 223 IETQSFREEL--AVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSL-GPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 223 ~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
+.+..+.|+. -...+.|..+| .++-+.+.-| .|+.+|+.+++......... ---..+.... ++.+...=.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk--- 108 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWK--- 108 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESS---
T ss_pred EEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEec---
Confidence 3455666543 35678886665 7777777766 69999999998776554332 2223445443 333333333
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEE
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
++...+||..+-+.+.+......+ ..++ .+++.|+.......++++|..+......+........-..+..+
T Consensus 109 ----~~~~f~yd~~tl~~~~~~~y~~EG--WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 109 ----EGTGFVYDPNTLKKIGTFPYPGEG--WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp ----SSEEEEEETTTTEEEEEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred ----CCeEEEEccccceEEEEEecCCcc--eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 899999999988777776655332 2233 67888999888999999998876555444433332223345566
Q ss_pred EEccCCCEEEEecCCCcEEEEecCCceeeEeeec------------c---CCceeEEEEcCCCCCEEEEe
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA------------Y---EQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~~p~~~~~l~s~ 432 (442)
.|- +|...|=.=....|...|..+|+.+..+.. + ..-.+.|+|+|....+++||
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 665 666666566677788999999988776531 1 24578999999887777777
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.29 E-value=0.00013 Score=52.31 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=75.8
Q ss_pred eEEEEeeC---CCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 148 VNSINWSP---THAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 148 V~~~~~s~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
|++|++.. |+.+.|+.|+.|..|+||+- ...+..+. -.+.|+++.-... ..|+.+-.+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~----~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG----DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC----CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cce
Confidence 66777655 44578999999999999983 35566666 4577888877665 57888999999999975 445
Q ss_pred EEeeeCCcceEEEEEcc---CCCCEEEEeeCCCcEEE
Q 013475 225 TQSFREELAVRVVKFHP---ENSNLFLSGGSKGLLRL 258 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i 258 (442)
+...+.+..+.++.+.. +|...|++|-.+|.|-+
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 56666666677777653 44457889988887743
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.29 E-value=0.00056 Score=61.64 Aligned_cols=216 Identities=12% Similarity=0.072 Sum_probs=119.2
Q ss_pred cEEEEEcccCCcceeeeeccCCCceeEEE---eCCC----CCEEEEEec----------CCcEEEEECCCC-----c--E
Q 013475 169 SICIWNVWSRDQKLARVLNFHSAAVNDVK---WSQQ----GLFVLSCGY----------DCSSRLVDVEKG-----I--E 224 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~---~~~~----~~~l~s~~~----------d~~v~vwd~~~~-----~--~ 224 (442)
.|+|.|..+.+......+. ....+.+++ |..+ ..+|+.|.. .|.|.++++.+. + .
T Consensus 3 ~i~l~d~~~~~~~~~~~l~-~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE-PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE-TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEEEEECC-CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 5677776443222222333 233444443 3332 467777654 288999999884 2 2
Q ss_pred EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-eEEEec-cCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 225 TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-VAHEYI-QSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
+......+.|++++-.. + . |+++. ++.|.+|++...+ ....-. .....+.++... +++++.+.. .
T Consensus 82 i~~~~~~g~V~ai~~~~-~-~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~-------~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN-G-R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA-------M 148 (321)
T ss_dssp EEEEEESS-EEEEEEET-T-E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES-------S
T ss_pred EEEEeecCcceEhhhhC-C-E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc-------c
Confidence 23334688899988772 2 4 44333 4689999998877 433222 122355555544 668888887 7
Q ss_pred CeEEEEeCCCC-cccceee-ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc----cc-cceeEeecccccCcE
Q 013475 303 NSIVVWDVSRE-VPLSKQV-YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR----LD-KFKRYESHGVSGFPI 375 (442)
Q Consensus 303 ~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~----~~-~~~~~~~~~~~~~v~ 375 (442)
..+.++..+.. ..+.... ......+.++.+-.++..++++..++.+.++....... .. .+...........++
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 77887755432 2122222 22345678888886667999999999999998763211 11 222222223334566
Q ss_pred EE---EEcc--CCC------EEEEecCCCcEEEE
Q 013475 376 KC---SFSL--DGE------KLVSGSSDGSIYFY 398 (442)
Q Consensus 376 ~~---~~s~--~g~------~l~~g~~dg~i~iw 398 (442)
++ .+.+ .+. .++.++.+|.|.+.
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 66 4445 222 47788889988843
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.00066 Score=63.03 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=116.3
Q ss_pred cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE
Q 013475 188 FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267 (442)
Q Consensus 188 ~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (442)
........+.++|++++++.++ ||...|+.....+... .+.....+|... +.+++-...+.|.++.--+.+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc----cCceeEEEEecC--ccEEEEECCCeEEEEEcCccccc
Confidence 3445678999999999999855 8888888844433322 234456788885 45677777888999732222222
Q ss_pred EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCe
Q 013475 268 HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY 347 (442)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (442)
..+... ..+..|-. |..|...+ ++.|.+||..+++.+.++... .+..+.|++++.+++..+.+ .
T Consensus 103 k~i~~~-~~~~~If~---G~LL~~~~--------~~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG---GNLLGVKS--------SDFICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp -----S-S-EEEEE----SSSEEEEE--------TTEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--S
T ss_pred eEEcCC-cccceEEc---CcEEEEEC--------CCCEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-e
Confidence 233322 22333332 88887777 568999999999887776543 37899999999999988755 5
Q ss_pred EEEeeCCCC--------cccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEE
Q 013475 348 IAIFSSTPP--------FRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDV 419 (442)
Q Consensus 348 i~i~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 419 (442)
+.+++.+.. .....+.... .....|.+.+|..+ .++-.+.. .|+. +-.|+. ..+..-..++.=+
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yll 238 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLL 238 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEE
T ss_pred EEEEEecchhcccccccCchhceEEEE--EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEE
Confidence 555554322 0000112221 11355778888766 44433433 5665 334432 2333335567777
Q ss_pred EEcCCCCCEEEEeeCCCcEEEc
Q 013475 420 AFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.+.+.. ..+.....|+.+..+
T Consensus 239 gy~~~~-~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 239 GYLPKE-NRLYLIDRDGNVISY 259 (443)
T ss_dssp EEETTT-TEEEEE-TT--EEEE
T ss_pred EEEccC-CEEEEEECCCCEEEE
Confidence 777765 577777788777643
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=0.0013 Score=55.13 Aligned_cols=244 Identities=11% Similarity=0.103 Sum_probs=138.4
Q ss_pred CceeEEEeCCC-CCEEEEEecCCc-EEEEECCCCcEEEeeeC---CcceEEEEEccCCCCEEEEeeCC-----CcEEEEE
Q 013475 191 AAVNDVKWSQQ-GLFVLSCGYDCS-SRLVDVEKGIETQSFRE---ELAVRVVKFHPENSNLFLSGGSK-----GLLRLWD 260 (442)
Q Consensus 191 ~~v~~l~~~~~-~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd 260 (442)
.....|+|+|. ..-++.+-.-|+ ..++|....+....+.. ..-.-.=.|++|| .+|+..-+| |.|-|||
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEe
Confidence 34456788884 445666655555 56889988877666651 2223345799997 666655433 7899999
Q ss_pred CCCC-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC-----------CcCCCCeEEEEeCCCCcccceeecc---ccc
Q 013475 261 IRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG-----------SNMSENSIVVWDVSREVPLSKQVYV---EAY 325 (442)
Q Consensus 261 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-----------~~~~d~~i~iwd~~~~~~~~~~~~~---~~~ 325 (442)
.+.+ +.+.++..|.-.-..+.|.+||+.++.+..-+. .....-.+.+.|..++..+.+.... ...
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 9854 456777777777788999999999988753110 0011235556666666666555443 345
Q ss_pred eeeeEEecCCCCeeEEEeCCC-------eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEE
Q 013475 326 TCPCVRHHPFDPYFVAQSNGN-------YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYF 397 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~-------~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~i 397 (442)
.+..+...++|..++.+-..| .+-.+..........+..-.......++-+++.+.+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 677778888777665542211 11111111111110000000011234566778776555555444 5556789
Q ss_pred EecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 398 YNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 398 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
||..+|..+..-.- ..+..++-...+ +.+| +.+|.+.+
T Consensus 307 ~da~tG~vv~~a~l--~daaGva~~~~g--f~vs-sg~G~~~~ 344 (366)
T COG3490 307 WDAATGAVVSEAAL--PDAAGVAAAKGG--FAVS-SGQGRIIF 344 (366)
T ss_pred EEcCCCcEEecccc--cccccceeccCc--eEEe-cCCceEEe
Confidence 99999987754332 123344444443 4444 34666653
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=5.2e-07 Score=82.67 Aligned_cols=201 Identities=14% Similarity=0.228 Sum_probs=132.1
Q ss_pred CcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCceE--EEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEE
Q 013475 231 ELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKVA--HEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIV 306 (442)
Q Consensus 231 ~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~ 306 (442)
...+.|+++.-+. ..++++|..+|.|-+-.++....- ....++..+.++++|++ |.++|++|-. .-..|..+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagld---khrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLD---KHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhh---hhcccCCcc
Confidence 4456666665443 367888999999999988754322 23355677899999988 4566666643 111267899
Q ss_pred EEeCCCCc--ccceeec--cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc-cccceeEeecccccCcEEEEEcc
Q 013475 307 VWDVSREV--PLSKQVY--VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR-LDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 307 iwd~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
|||+.+.. +...... .......+++|..+.+.+++|...+.+.++|++.... ...+. ...+..+..+|
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-------Tk~vqG~tVdp 205 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-------TKYVQGITVDP 205 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh-------hhhcccceecC
Confidence 99998862 2211111 1223445788888889999999999999999984322 11111 12345677788
Q ss_pred -CCCEEEEecCCCcEEEEe-cCCc-eeeEeeeccC----CceeEEEEcCCCCCEEEEeeCC-CcEEEcC
Q 013475 382 -DGEKLVSGSSDGSIYFYN-CRSS-ELERKIKAYE----QACIDVAFHPILPNIIGSCSWN-GDVSVYE 442 (442)
Q Consensus 382 -~g~~l~~g~~dg~i~iwd-~~~~-~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd 442 (442)
.++|+++-. ||.|.+|| ..+- +++..+.... ..+..++|.|....++++...| ++|+++|
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 778888766 99999999 3332 3333333222 2489999999876688887765 6777765
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.18 E-value=3.9e-05 Score=71.61 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=89.3
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV 266 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 266 (442)
|...|.--++...+++++.|+.-|.+++|+-..++....-. ..+.+..+..+++ ..+++.|+..|.|.++.++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 44556556667788999999999999999987776544433 3445556667777 48889999999999998876432
Q ss_pred E-----EEe-ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 267 A-----HEY-IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 267 ~-----~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
- ... +.|...|++++|++++..+.+|.. .|.|.+-.+..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-------~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-------QGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCC-------CceEEEEEech
Confidence 1 111 236779999999999999999998 99999988877
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.17 E-value=0.0032 Score=59.09 Aligned_cols=234 Identities=14% Similarity=0.086 Sum_probs=122.7
Q ss_pred eeEEEeCCCCCEEEEE-ecCC----cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCC----------CcEE
Q 013475 193 VNDVKWSQQGLFVLSC-GYDC----SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK----------GLLR 257 (442)
Q Consensus 193 v~~l~~~~~~~~l~s~-~~d~----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~ 257 (442)
+....++|++++|+.+ +..| .|+++|+++++.+...-.......+.|.+++..++.+...+ ..|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3467899999998866 3333 59999999997765432222223499999975555555333 2378
Q ss_pred EEECCCCce--EEEeccCCCC--EeEEEEeeCCCEEEeccCCCCCcCCC-CeEEEEeCCCC---c-ccceeeccccceee
Q 013475 258 LWDIRTGKV--AHEYIQSLGP--ILDVEFTINGKQFVSSSDVSGSNMSE-NSIVVWDVSRE---V-PLSKQVYVEAYTCP 328 (442)
Q Consensus 258 iwd~~~~~~--~~~~~~~~~~--i~~~~~~~~~~~l~~~~~~~~~~~~d-~~i~iwd~~~~---~-~~~~~~~~~~~~~~ 328 (442)
.|.+.+... ...+...... ...+..+.|+++++...... .+ ..+.+.|+... . ....+.........
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~----~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG----TSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS----SSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc----ccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 888876542 2333333322 66888999999987654311 13 67888888874 1 22222222222222
Q ss_pred eEEecCCCCeeEEE---eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe-cCCC--cEEEEecCC
Q 013475 329 CVRHHPFDPYFVAQ---SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG-SSDG--SIYFYNCRS 402 (442)
Q Consensus 329 ~~~~~~~~~~l~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg--~i~iwd~~~ 402 (442)
.+... .+.+++.. ...+.|...++...........+..+.....+..+. ..+++|+.. ..++ .|+++++..
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEECCC
Confidence 23333 34444433 234567777777655321111233232222333333 344455543 3343 588999883
Q ss_pred ceeeEeeec-cCCceeEEEEcCCCCCEEEEee
Q 013475 403 SELERKIKA-YEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 403 ~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
+.....+.. -.+.|..+...++++.++++.+
T Consensus 359 ~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 359 GKESREIPLPEAGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp TEEEEEEESSSSSEEEEEES-TT-SEEEEEEE
T ss_pred CcEEeeecCCcceEEeccCCCCCCCEEEEEEe
Confidence 444343332 2445666666666645555443
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.15 E-value=0.001 Score=61.64 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=129.3
Q ss_pred ccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC----cceeeeeccCCCceeEEEeCCCCC
Q 013475 128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD----QKLARVLNFHSAAVNDVKWSQQGL 203 (442)
Q Consensus 128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~ 203 (442)
...-...++++.++.--.+.|.++.|+.+ .+ |+.-..||.+++||+.... ........-....+....+..+|-
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCC-Ce-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence 33344556666666544489999999887 55 4556679999999984221 001111111222233334444553
Q ss_pred EEEEEecCCcEEEEECCCCc-EEEeee-CCc---------ceEE-EEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec
Q 013475 204 FVLSCGYDCSSRLVDVEKGI-ETQSFR-EEL---------AVRV-VKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~-~~~~~~-~~~---------~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (442)
.+++ .++.+.+.+-.... ..+.+. ... .... ..+..+. ...+....++.+.+.+-...+. +
T Consensus 141 vvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 141 VVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred EEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc---c-
Confidence 3333 34444443322211 111111 000 0000 1233332 3333334444555443222111 1
Q ss_pred cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 272 QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
...+++..|+.||+|++++.-.. +|.+.+.+..-.+.+.............+.|.-++..++.- ...+.++
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~-------~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lv 284 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTD-------SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLV 284 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEEC-------CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEE
Confidence 12468999999999999999887 89999988766655555555544455666666543322222 2333333
Q ss_pred eCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec
Q 013475 352 SSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA 411 (442)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 411 (442)
.... ..+.|.-++..++..-.|| ++|+.-..-+.++.+..
T Consensus 285 g~~~-------------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 285 GPDG-------------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred CCCC-------------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 3211 1234545555666666677 88887666666666654
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.12 E-value=0.0091 Score=57.40 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=110.8
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccC-CCcee----------EEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFH-SAAVN----------DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~----------~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
..|+.++.++.|.-.|..++ +.+..+... ...+. .+++ .+..++.++.|+.|.-.|.++|+.+..
T Consensus 70 g~vyv~s~~g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CEEEEECCCCcEEEEECCCC--ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 35666667788888887554 444443311 01111 1122 234677788899999999999999887
Q ss_pred eeCCc-----ceEE-EEEccCCCCEEEEee------CCCcEEEEECCCCceEEEeccCCC--------------------
Q 013475 228 FREEL-----AVRV-VKFHPENSNLFLSGG------SKGLLRLWDIRTGKVAHEYIQSLG-------------------- 275 (442)
Q Consensus 228 ~~~~~-----~v~~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 275 (442)
+.... .+++ -.+. + ..++++. .+|.|..+|.++|+.+.++..-..
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-K--GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred cccccccccccccCCcEEE-C--CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 76211 1211 1111 2 2344443 268999999999988766532111
Q ss_pred -----------CE-eEEEEeeCCCEEEeccCC-----C----CCcCCCCeEEEEeCCCCcccceeecccc--------ce
Q 013475 276 -----------PI-LDVEFTINGKQFVSSSDV-----S----GSNMSENSIVVWDVSREVPLSKQVYVEA--------YT 326 (442)
Q Consensus 276 -----------~i-~~~~~~~~~~~l~~~~~~-----~----~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~ 326 (442)
.+ ..+.+.++..++..+... . +.+.....|.-.|+++++..-.....+. ..
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 11 123555555555555421 0 0011123778888998887655444221 11
Q ss_pred eeeEEecCCCC---eeEEEeCCCeEEEeeCCCCccc
Q 013475 327 CPCVRHHPFDP---YFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 327 ~~~~~~~~~~~---~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
..-+....+|+ .++.+..+|.++++|..++..+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12222334565 6778999999999999887654
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=6.1e-05 Score=73.63 Aligned_cols=130 Identities=11% Similarity=0.050 Sum_probs=90.4
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecC-----CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP-----FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
...|+-.|+..++.+..+.......+..++-.. ...-.++|-.++.+..||.+-....................+
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 688999999999999888887766555554332 134567788999999999986431111011111122334567
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
++-+.+| +||+|+.+|.|++||-...+....+.+...+|.+|..+.||..+|+||
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 7777676 899999999999999543344445667789999999999996566665
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.0012 Score=60.45 Aligned_cols=232 Identities=14% Similarity=0.061 Sum_probs=117.5
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC--------
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-------- 263 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 263 (442)
.|+.+.|.++...|+++...|.|.||.....+... -+....-..+.+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF-------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S---------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc-------cccCCCcceEEehhhCCccccc
Confidence 58899999998899999999999999877654332 000111111111111 01111222333322
Q ss_pred C-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-------cceeeeEEec--
Q 013475 264 G-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-------AYTCPCVRHH-- 333 (442)
Q Consensus 264 ~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~-- 333 (442)
+ .+...+....++|++++.| |=-+++.+.. +|.+.|.|+|....+......+ ...++++.|.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~-------~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYE-------SGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEET-------TSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEec-------CCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence 1 2334445567899999997 5558899998 9999999999887665533222 2345566664
Q ss_pred ---CCC---CeeEEEeCCCeEEEeeCCC-CcccccceeEeec-ccccCcEEEE-EccC-C--------------------
Q 013475 334 ---PFD---PYFVAQSNGNYIAIFSSTP-PFRLDKFKRYESH-GVSGFPIKCS-FSLD-G-------------------- 383 (442)
Q Consensus 334 ---~~~---~~l~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~-~~~~~v~~~~-~s~~-g-------------------- 383 (442)
.|+ -.+++|++.|.+.+|.+.. ............. .+.+.+..+. |+.+ |
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 233 4688899999999998752 1111111111111 1223333332 3211 1
Q ss_pred CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc-----CCCCCEEEEeeCCCcEEEc
Q 013475 384 EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH-----PILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 384 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~s~~~dg~i~iw 441 (442)
.+++++ .+..++|+...+.+..++.....-.+..+.+- ..+ ..|++-..||.|++|
T Consensus 227 g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 227 GYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEE
T ss_pred cEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEE
Confidence 134443 45679999998877765554322233344452 234 678888899999986
No 364
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=98.04 E-value=0.01 Score=54.49 Aligned_cols=269 Identities=12% Similarity=0.094 Sum_probs=139.9
Q ss_pred CCCCCEEEEecCCCcEEEEEcccCCcc---eeeeeccCCCceeEEEeCC-----CCCEEEEEecCCcEEEEECCCC----
Q 013475 155 PTHAHLLASAGMDQSICIWNVWSRDQK---LARVLNFHSAAVNDVKWSQ-----QGLFVLSCGYDCSSRLVDVEKG---- 222 (442)
Q Consensus 155 ~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~d~~v~vwd~~~~---- 222 (442)
+++...++.|+..|.++||+....... ++...+ -..+|..|..-. +...|++ =.-..+.||.+...
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 344678999999999999998544322 222222 457888887542 2234444 55777888887321
Q ss_pred ------cEEEeeeC--CcceEEEEEccC----CCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 223 ------IETQSFRE--ELAVRVVKFHPE----NSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 223 ------~~~~~~~~--~~~v~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
+....++| ......+++-+- +..+|.+-+.||.+.+|+-+.....+.+.. .--...+.|.+.-+.|+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 11122222 333444444332 247888899999999999765443333333 12223467888888888
Q ss_pred eccCCCCCcCCCCeEEEEeCCCC---------------------cccceeeccccce---eeeEEecCCCCeeEEEeCCC
Q 013475 291 SSSDVSGSNMSENSIVVWDVSRE---------------------VPLSKQVYVEAYT---CPCVRHHPFDPYFVAQSNGN 346 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~---------------------~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ 346 (442)
+++. +..+..|....- +....+...-+.. +..+.++.....+++- ...
T Consensus 191 t~ss-------s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL-ger 262 (418)
T PF14727_consen 191 TASS-------SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL-GER 262 (418)
T ss_pred EecC-------ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE-ecc
Confidence 8886 778888865320 0111111111112 2223333233333333 233
Q ss_pred eEEEeeCCCCcccccceeEeecccccCcEEEEEccCC---CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEE---
Q 013475 347 YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG---EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVA--- 420 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--- 420 (442)
.+.+.+..+. +...+.+......-.+..+.+..++ ..+++++.++.+.||. ..+++..-+....+| ++.
T Consensus 263 ~Lf~l~~~G~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~ 337 (418)
T PF14727_consen 263 SLFCLKDNGS--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVAN 337 (418)
T ss_pred eEEEEcCCCe--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecc
Confidence 4444444432 2212222221111111112111222 2588889999999996 334444333322333 222
Q ss_pred EcCCCCCEEEEeeCCCcEEE
Q 013475 421 FHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~i 440 (442)
|.... -+|++-+.+|.|.+
T Consensus 338 ~~~~~-G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 338 FNGLK-GLIVSLSDEGQLSV 356 (418)
T ss_pred cCCCC-ceEEEEcCCCcEEE
Confidence 32222 48888888998865
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.7e-05 Score=70.86 Aligned_cols=93 Identities=22% Similarity=0.291 Sum_probs=81.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCcee-EEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVN-DVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
...|.-+.|+|. ..++|++..+|.|.+..+. ...+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++.
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 356888999999 8999999999999999973 567777877888888 99999999999999999999999999998
Q ss_pred EEEe--eeCCcceEEEEEcc
Q 013475 224 ETQS--FREELAVRVVKFHP 241 (442)
Q Consensus 224 ~~~~--~~~~~~v~~~~~~~ 241 (442)
.+.. +.....|.++.|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 8887 55677888888864
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.98 E-value=0.015 Score=54.54 Aligned_cols=245 Identities=15% Similarity=0.176 Sum_probs=125.5
Q ss_pred ceEEEEeeCCCCCEEEEe-cCCC----cEEEEEcccCCcceee-eeccCCCceeEEEeCCCCCEEEEEecCC--------
Q 013475 147 AVNSINWSPTHAHLLASA-GMDQ----SICIWNVWSRDQKLAR-VLNFHSAAVNDVKWSQQGLFVLSCGYDC-------- 212 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d~-------- 212 (442)
.+....+||+ +++||.+ +..| .|+++|+.++ +.+. .+.. .....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCC--cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 4446789999 7766654 4444 5999999665 3322 2221 1223499999988877765433
Q ss_pred ---cEEEEECCCCcEE--Eeee--CCcc-eEEEEEccCCCCEEEEeeCC---CcEEEEECCCC----ceEEEeccCCCCE
Q 013475 213 ---SSRLVDVEKGIET--QSFR--EELA-VRVVKFHPENSNLFLSGGSK---GLLRLWDIRTG----KVAHEYIQSLGPI 277 (442)
Q Consensus 213 ---~v~vwd~~~~~~~--~~~~--~~~~-v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~----~~~~~~~~~~~~i 277 (442)
.|+.|.+.+.... ..++ .... ...+..++++..+++..... ..+++.|+..+ .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 3788888776432 4444 2333 66788899975445444333 35888888774 2333343333344
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--cceeeccccceeeeEEecCCCCeeEEE-eCC--CeEEEee
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP--LSKQVYVEAYTCPCVRHHPFDPYFVAQ-SNG--NYIAIFS 352 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~i~i~~ 352 (442)
....-+..+.+++.... ....+.|...++..... .......+...+.-..+...+.+|++. ..+ ..|++++
T Consensus 280 ~~~v~~~~~~~yi~Tn~----~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTND----DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEEETTEEEEEE-T----T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEccCCEEEEeeCC----CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 33333334444443332 12267888888887653 122333333322222333345555553 333 3678888
Q ss_pred CC-CCcccccceeEeecccccCcEEEEEccCCCEEEEe--c--CCCcEEEEecCCcee
Q 013475 353 ST-PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG--S--SDGSIYFYNCRSSEL 405 (442)
Q Consensus 353 ~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g--~--~dg~i~iwd~~~~~~ 405 (442)
+. +.... .... ...+.+..+...++++.+... + .-++++.||+.+++.
T Consensus 356 ~~~~~~~~----~~~~-p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESR----EIPL-PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEE----EEES-SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCcEEe----eecC-CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 87 32111 1111 112223444444555444322 1 235688888888765
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.96 E-value=0.0093 Score=58.66 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=159.0
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee--ccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL--NFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
.|.-..|--| ..+|.++..||.+.-|.++..+..+...- .--..++.--.|+..++.-+.+..|.-..+|.-+..-+
T Consensus 585 SIl~~~~e~d-~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGD-IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred heeeEEeecc-ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence 4555556655 78999999999998887755443332221 22345666666766544444444566666666544333
Q ss_pred EEeeeCCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCce--EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc--
Q 013475 225 TQSFREELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKV--AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN-- 299 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~-- 299 (442)
...+..+..-..+.|+.+. ...++.+. .+.+++.-+..-+. ++++..+ .....+++.+....+.+.+......
T Consensus 664 ~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 664 YSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred EeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchh
Confidence 3323222222223343332 23344444 45677776654322 2333333 4556677776444444444311111
Q ss_pred -----CCCCeEEEEeCCCCcccceeecccc---ceeeeEEecCC-CCeeEEEeC----------CCeEEEeeCCCCcccc
Q 013475 300 -----MSENSIVVWDVSREVPLSKQVYVEA---YTCPCVRHHPF-DPYFVAQSN----------GNYIAIFSSTPPFRLD 360 (442)
Q Consensus 300 -----~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~----------~~~i~i~~~~~~~~~~ 360 (442)
..-..++++|-++.+.+........ ..+.+..|..+ +.++++|+. .|.|.+|.......+
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L- 820 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL- 820 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-
Confidence 1123566777776655444333332 34555568777 677777653 478888888774333
Q ss_pred cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 361 KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 361 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
+....+...+.+.++.. -+|++||.-+ ..|++|++.+.+.++.-..|...+..+...-.+ ..++.|..-+++.+
T Consensus 821 --~~v~e~~v~Gav~aL~~-fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 821 --ELVAETVVKGAVYALVE-FNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITL 894 (1096)
T ss_pred --eeeeeeeeccceeehhh-hCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEE
Confidence 33333333444444432 2677777654 569999998886666666677788888777777 67777765555543
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=2.4e-05 Score=63.14 Aligned_cols=134 Identities=7% Similarity=-0.003 Sum_probs=83.8
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
++.|.-++++..+........+... .....-+..+++|+.++.|++|............... .....+.+.--.
T Consensus 39 ~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~ 112 (238)
T KOG2444|consen 39 DGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGR 112 (238)
T ss_pred Ccccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcc---cccceecccccc
Confidence 8899888887654333222221111 2333346788999999999999887332221111111 111122233334
Q ss_pred CCCEEEEecCCCcEEEEecCCceeeEeeeccC-CceeEEEEcCCCCCEEEEe--eCCCcEEEcC
Q 013475 382 DGEKLVSGSSDGSIYFYNCRSSELERKIKAYE-QACIDVAFHPILPNIIGSC--SWNGDVSVYE 442 (442)
Q Consensus 382 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd 442 (442)
++.+..+++.||.|+.|++.-.+.+.....|. ..+..+..+..+ .+++.. |.|..++.||
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcc
Confidence 56688999999999999999888887777776 455555555555 577777 7788888885
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.022 Score=54.81 Aligned_cols=254 Identities=14% Similarity=0.095 Sum_probs=138.4
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeec--cCCCceeEEEeCC---CCCEEEEEec------CCcEEEEECCCCcEEEe
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLN--FHSAAVNDVKWSQ---QGLFVLSCGY------DCSSRLVDVEKGIETQS 227 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~---~~~~l~s~~~------d~~v~vwd~~~~~~~~~ 227 (442)
..++.++.|+.|.-.|..++ +.+.... .+... ..+.-+| ++ .++++.. +|.|..+|.++|+.+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TG--k~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTG--KVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CEEEEEcCCCEEEEEECCCC--CEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 35667778899988888555 4443332 11110 1111122 34 4555432 68999999999998877
Q ss_pred eeCC--c------------------------------ceE-EEEEccCCCCEEEEeeC-----CC-----------cEEE
Q 013475 228 FREE--L------------------------------AVR-VVKFHPENSNLFLSGGS-----KG-----------LLRL 258 (442)
Q Consensus 228 ~~~~--~------------------------------~v~-~~~~~~~~~~~l~~~~~-----dg-----------~i~i 258 (442)
+... . .+. .+.+.+.. .+++.+.. ++ .|.-
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 6511 1 011 23555553 45554431 12 6788
Q ss_pred EECCCCceEEEeccCCCCEe---------EEEEeeCCC---EEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-----
Q 013475 259 WDIRTGKVAHEYIQSLGPIL---------DVEFTINGK---QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY----- 321 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~---------~~~~~~~~~---~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----- 321 (442)
.|+++|+....++.....+. -+.+..+|+ .++.+.. +|.+.+.|-++++.+.....
T Consensus 276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K-------~G~~~vlDr~tG~~i~~~~~~~~~~ 348 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR-------NGFFYVLDRTNGKLLSAEPFVDTVN 348 (527)
T ss_pred EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC-------CceEEEEECCCCceeccccccCCcc
Confidence 89999998877654222221 122224665 6667777 99999999999876421100
Q ss_pred -----c-cc-----------------------------ceeeeEEecCCCCeeEEEeCC---------------------
Q 013475 322 -----V-EA-----------------------------YTCPCVRHHPFDPYFVAQSNG--------------------- 345 (442)
Q Consensus 322 -----~-~~-----------------------------~~~~~~~~~~~~~~l~~~~~~--------------------- 345 (442)
. .. ..-..++++|+..++.+...+
T Consensus 349 w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~ 428 (527)
T TIGR03075 349 WATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGA 428 (527)
T ss_pred cccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecc
Confidence 0 00 000124556655555543333
Q ss_pred ------------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC
Q 013475 346 ------------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE 413 (442)
Q Consensus 346 ------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 413 (442)
+.|.-+|+.++...+....- .....-.+.-.|.+++.++.+|.++.+|.++|+.+.+++...
T Consensus 429 ~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~------~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 429 GLTIKPPPDDHMGSLIAWDPITGKIVWEHKED------FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred ccccCCCCCCCceeEEEEeCCCCceeeEecCC------CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 23444555554443322210 000011112255677888889999999999999998887542
Q ss_pred CceeE--EEEcCCCCCEEEE
Q 013475 414 QACID--VAFHPILPNIIGS 431 (442)
Q Consensus 414 ~~v~~--~~~~p~~~~~l~s 431 (442)
.+.. +.|.-+|.++++.
T Consensus 503 -~~~a~P~ty~~~G~qYv~~ 521 (527)
T TIGR03075 503 -GIVGPPVTYEQDGKQYVAV 521 (527)
T ss_pred -CceecCEEEEeCCEEEEEE
Confidence 2222 3334456445544
No 370
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.89 E-value=0.011 Score=58.31 Aligned_cols=282 Identities=12% Similarity=0.117 Sum_probs=151.9
Q ss_pred cccceEEEEeeCC--CCC---EEEEecCCCcEEEEEcccCCcceeee-ecc--CCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 144 HTKAVNSINWSPT--HAH---LLASAGMDQSICIWNVWSRDQKLARV-LNF--HSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 144 h~~~V~~~~~s~~--~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~--h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
....|.|+.++|- +.+ +++.|..+..+.+--........... +.+ -...|.-..|-.|..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3578999999975 334 88888877766554432121111111 211 123455556666788999999999987
Q ss_pred EEEC--CCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeE-EEEee--CCC
Q 013475 216 LVDV--EKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILD-VEFTI--NGK 287 (442)
Q Consensus 216 vwd~--~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~~--~~~ 287 (442)
.+.+ .+++.-..-+ ...++.--.|+..+...+++++ |.-..+|.. +++.+.+--.- ..+.. +.|+. -..
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv~spls~-kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLVYSPLSL-KEVNHMCPFNSDAYPD 685 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEEEeccch-HHhhhhcccccccCCc
Confidence 6654 4443322221 4566666777776655655554 455555554 34433221110 11111 12222 234
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC--------------CeEEEeeC
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG--------------NYIAIFSS 353 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~i~i~~~ 353 (442)
.++++. .+.+++.-+..-..+.............+++.+....+.+.+.. ..++++|.
T Consensus 686 ~l~~~~--------~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~ 757 (1096)
T KOG1897|consen 686 SLASAN--------GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ 757 (1096)
T ss_pred eEEEec--------CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence 566666 67888887776544444444555566667777744444443221 23555555
Q ss_pred CCCcccccceeEeecccccCcEEEEEccC-CCEEEEecC----------CCcEEEEecCCceeeEeeecc--CCceeEEE
Q 013475 354 TPPFRLDKFKRYESHGVSGFPIKCSFSLD-GEKLVSGSS----------DGSIYFYNCRSSELERKIKAY--EQACIDVA 420 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~ 420 (442)
++-..+.. ..+........+.++.|..| +.++++|.. .|.|.||.+..++.++.+..+ ++.+.++.
T Consensus 758 nTf~vl~~-hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~ 836 (1096)
T KOG1897|consen 758 NTFEVLSS-HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV 836 (1096)
T ss_pred CceeEEee-ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh
Confidence 54322211 11111122233555668877 778888753 588999988774444444332 45566654
Q ss_pred EcCCCCCEEEEeeCCCcEEEc
Q 013475 421 FHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iw 441 (442)
--. | ++||.- ...|++|
T Consensus 837 ~fn-g-kllA~I--n~~vrLy 853 (1096)
T KOG1897|consen 837 EFN-G-KLLAGI--NQSVRLY 853 (1096)
T ss_pred hhC-C-eEEEec--CcEEEEE
Confidence 433 3 466654 4456665
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=5.6e-05 Score=43.28 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=34.3
Q ss_pred ceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 403 SELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++++..+..|...|.++.|++++ .++++++.||.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 35566777888999999999998 7999999999999997
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.87 E-value=0.018 Score=51.65 Aligned_cols=254 Identities=15% Similarity=0.152 Sum_probs=123.2
Q ss_pred Ccceecccccc-cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeC--CCCCEEEEEec-
Q 013475 135 GRLSTALCHHT-KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWS--QQGLFVLSCGY- 210 (442)
Q Consensus 135 ~~~~~~l~~h~-~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~- 210 (442)
...+..|..+. .......++++ .+.++-...+..|+-.|+.+.+...+..+. ...+-...|. .|+..++-.-.
T Consensus 69 t~~i~QLTdg~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~ 145 (386)
T PF14583_consen 69 TGEITQLTDGPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDCTKLVGIEIS 145 (386)
T ss_dssp T-EEEE---SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEE
T ss_pred cCEEEECccCCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCccEEEEEEEe
Confidence 33444444433 22334566777 555544444467777788666444444443 4444445553 35665543321
Q ss_pred ---------------------CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC---CCc-EEEEECCC-C
Q 013475 211 ---------------------DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS---KGL-LRLWDIRT-G 264 (442)
Q Consensus 211 ---------------------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~-i~iwd~~~-~ 264 (442)
...|.-.|+.+|+....+....-+..+.|+|.+..+|+-|-+ +.. -+||-+++ +
T Consensus 146 ~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 146 REDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp GGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred ehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 235667788999888888888889999999988777777643 221 25565543 3
Q ss_pred ceEEEeccCC--CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE
Q 013475 265 KVAHEYIQSL--GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 265 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (442)
.....+..+. ..+..=-|.+||..|..-+.. .+..+..|.-+|+.+...... .....+..+..++++++++--
T Consensus 226 ~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~--~~~~~~~i~~~d~~t~~~~~~---~~~p~~~H~~ss~Dg~L~vGD 300 (386)
T PF14583_consen 226 SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT--PGGQDFWIAGYDPDTGERRRL---MEMPWCSHFMSSPDGKLFVGD 300 (386)
T ss_dssp ---EESS---TTEEEEEEEE-TTSS-EEEEEEE--TTT--EEEEEE-TTT--EEEE---EEE-SEEEEEE-TTSSEEEEE
T ss_pred CcceeeecCCCCcccccccccCCCCEEEEEeec--CCCCceEEEeeCCCCCCceEE---EeCCceeeeEEcCCCCEEEec
Confidence 3334443332 233444578999887764431 122366788888887654321 111235567778888888773
Q ss_pred eCC----------------CeEEEeeCCCCcccccceeEeecc-------cccC--cEEEEEccCCCEEEE-ecCCCcEE
Q 013475 343 SNG----------------NYIAIFSSTPPFRLDKFKRYESHG-------VSGF--PIKCSFSLDGEKLVS-GSSDGSIY 396 (442)
Q Consensus 343 ~~~----------------~~i~i~~~~~~~~~~~~~~~~~~~-------~~~~--v~~~~~s~~g~~l~~-g~~dg~i~ 396 (442)
+.| ..|++++....... .+..|. +... =-...|+|||++|+. ....|...
T Consensus 301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~----~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~ 376 (386)
T PF14583_consen 301 GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR----KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPA 376 (386)
T ss_dssp E-------------------EEEEEETTTTEEE----EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-E
T ss_pred CCCCCccccccccceecCCcEEEEeccccCcee----eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCcc
Confidence 333 25666777654322 111111 0011 125799999998765 45577766
Q ss_pred EEec
Q 013475 397 FYNC 400 (442)
Q Consensus 397 iwd~ 400 (442)
||=+
T Consensus 377 vY~v 380 (386)
T PF14583_consen 377 VYLV 380 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.017 Score=50.94 Aligned_cols=219 Identities=16% Similarity=0.120 Sum_probs=127.1
Q ss_pred EEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-
Q 013475 151 INWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR- 229 (442)
Q Consensus 151 ~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~- 229 (442)
-.|.++.+.++.+--..+.|.-|+..++ ....+. +.+.+.++.....+..|+++. .-+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g---~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETG---KKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcC---ceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 3577774556666667788999987433 223333 334445555544555555543 347778877666533332
Q ss_pred -----CCcceEEEEEccCCCCEEEEeeC-----------CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 230 -----EELAVRVVKFHPENSNLFLSGGS-----------KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 230 -----~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
.....+.+...|+| .+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|..+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 23456788889987 44443322 133555554 4566666665555668899999998877766
Q ss_pred CCCCCcCCCCeEEEEeCCC--Cc---c-cceeeccccceeeeEEecCCCCeeEEEeCC-CeEEEeeCCCCcccccceeEe
Q 013475 294 DVSGSNMSENSIVVWDVSR--EV---P-LSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-NYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~--~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~i~i~~~~~~~~~~~~~~~~ 366 (442)
. ..+.|.-|++.. .. . .......+....-.++...+|.+.+++..+ +.|.+|+.+ +..+.. ..
T Consensus 182 T------~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~---i~ 251 (307)
T COG3386 182 T------PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE---IK 251 (307)
T ss_pred C------CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE---EE
Confidence 4 258888888762 11 1 111111234556667788888888655444 499999988 433322 22
Q ss_pred ecccccCcEEEEEcc-CCCEEEEe
Q 013475 367 SHGVSGFPIKCSFSL-DGEKLVSG 389 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~-~g~~l~~g 389 (442)
... ..+++++|-- +.+.|++.
T Consensus 252 lP~--~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 252 LPV--KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCC--CCCccceEeCCCcCEEEEE
Confidence 211 4466777754 44544443
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=3.4e-05 Score=44.26 Aligned_cols=38 Identities=39% Similarity=0.596 Sum_probs=33.8
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWN 174 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd 174 (442)
+....+..|...|+++.|+++ +.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 456677889999999999998 78999999999999996
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.80 E-value=0.0037 Score=44.96 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=70.6
Q ss_pred eeEEEeCC---C-CCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE
Q 013475 193 VNDVKWSQ---Q-GLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH 268 (442)
Q Consensus 193 v~~l~~~~---~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 268 (442)
|++|++.. + .+.|++|+.|..|++|+-+ +.+..+.....|++++-... ..|+.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 3 2689999999999999854 67888888889999988875 57899999999999975 34445
Q ss_pred EeccCCCCEeEEEEee-C--C-CEEEeccCCCCCcCCCCeEE
Q 013475 269 EYIQSLGPILDVEFTI-N--G-KQFVSSSDVSGSNMSENSIV 306 (442)
Q Consensus 269 ~~~~~~~~i~~~~~~~-~--~-~~l~~~~~~~~~~~~d~~i~ 306 (442)
..+.. ..+.++.+.. + | ..|++|-. +|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~Gws-------nGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWS-------NGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEec-------CCeEE
Confidence 55543 3366666543 2 2 24566654 77664
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.80 E-value=0.00081 Score=66.04 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=92.8
Q ss_pred CCCcEEEEEcccCCcceeeeeccCCCc-eeEEEeCC-----CCCEEEEEecCCcEEEEECCCCc--EEE----eeeCCcc
Q 013475 166 MDQSICIWNVWSRDQKLARVLNFHSAA-VNDVKWSQ-----QGLFVLSCGYDCSSRLVDVEKGI--ETQ----SFREELA 233 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~-----~~~~l~s~~~d~~v~vwd~~~~~--~~~----~~~~~~~ 233 (442)
....|+-.|+ ..++.+..+..|... |..++=.. +....+.|-.++.+..||.+-.. ++. .+.....
T Consensus 502 ~~~~ly~mDL--e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDL--ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEec--CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4466777777 445777777766644 55543221 13345667778889999987532 221 2234566
Q ss_pred eEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE-EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH-EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 234 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
.+|++-..+| +|++|+.+|.|++||- .++..+ .+.+-..+|..|..+.||+++++.+ +..|.+++..
T Consensus 580 Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--------~tyLlLi~t~ 647 (794)
T PF08553_consen 580 FSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--------KTYLLLIDTL 647 (794)
T ss_pred ceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--------cceEEEEEEe
Confidence 7788777664 8899999999999994 444333 3445568999999999999999988 7889998863
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.79 E-value=0.0032 Score=60.93 Aligned_cols=188 Identities=11% Similarity=0.055 Sum_probs=101.5
Q ss_pred CCCceeEEEeCCCCCEEEEEe------cCC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC--------
Q 013475 189 HSAAVNDVKWSQQGLFVLSCG------YDC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS-------- 252 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~------~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------- 252 (442)
....+...+++++|+.++... .|+ .|.+++.. +.. ..+......+.-.|+|+|..+.+....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 335678999999999888765 243 45555542 222 333333348889999996433333211
Q ss_pred ---CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEE---EeCCCCc-cc---ceeecc
Q 013475 253 ---KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVV---WDVSREV-PL---SKQVYV 322 (442)
Q Consensus 253 ---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i---wd~~~~~-~~---~~~~~~ 322 (442)
.+.+.+.++..++... ...+.|..+.|++||..++... ++.|.+ -....+. .+ ......
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--------GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--------CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 2334444444333322 2245799999999999999877 577777 3333332 11 001111
Q ss_pred ccceeeeEEecCCCCeeEEEeCCC--eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEE
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSNGN--YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIY 396 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 396 (442)
.......+.|..++.++ ++..+. .+...++...... .+........+..++-++ ..|+....+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAASP--STVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc----ccCCCCccCceEEEecCC--ceEEEEcCCceEE
Confidence 22235778999999865 444443 3444445433221 111111223345555554 2455556666333
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00013 Score=67.44 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=79.9
Q ss_pred CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEe-EEEEeeCCCEEEeccCCCCCcCCCCeEEEE
Q 013475 230 EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPIL-DVEFTINGKQFVSSSDVSGSNMSENSIVVW 308 (442)
Q Consensus 230 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 308 (442)
....+.-+.|+|. ..+|+.+..+|.|.+..++ .+.+.++.-+...++ +++|.|||+.|+.|-. ||+|++.
T Consensus 19 l~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k-------dG~I~L~ 89 (665)
T KOG4640|consen 19 LPINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK-------DGTIRLH 89 (665)
T ss_pred cccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec-------CCeEEEE
Confidence 4556888999998 5999999999999999987 777888886767777 9999999999999998 9999999
Q ss_pred eCCCCcccceeeccccceeeeEEec
Q 013475 309 DVSREVPLSKQVYVEAYTCPCVRHH 333 (442)
Q Consensus 309 d~~~~~~~~~~~~~~~~~~~~~~~~ 333 (442)
|+.++..+..........+.++.|.
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EccCCCceeccccccccchheeecc
Confidence 9999887776555555566667665
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.015 Score=49.37 Aligned_cols=118 Identities=8% Similarity=0.108 Sum_probs=85.2
Q ss_pred eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 186 LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 186 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
+.+-...+.++.|+|+.+.|++......-.||=..+|+.+..+. .-.....+.+..+| .+.++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcC
Confidence 34455669999999999999998888888888888899998887 34455677887764 6666667788888888765
Q ss_pred CceEEE-----e-----ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 264 GKVAHE-----Y-----IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 264 ~~~~~~-----~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
...+.. + ...+.....++|.+.++.|..+-+ .+-+.||...
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-------r~P~~I~~~~ 210 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-------RNPIGIFEVT 210 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-------cCCcEEEEEe
Confidence 432211 1 111446678899998888888776 6666666655
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0014 Score=59.71 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=85.9
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-------eeEEEeCCCeEEEeeCCCCcccccceeEeec--cccc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-------YFVAQSNGNYIAIFSSTPPFRLDKFKRYESH--GVSG 372 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~~~ 372 (442)
...++-.|++.++.+........ |.-+.+.|+.+ .-++|-.++.|.-||.+-.... .+...+.+ ....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYSTKN 431 (644)
T ss_pred cCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeecccccccc
Confidence 67788889999998888777665 55666666554 2355778889999998844331 11111111 1112
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
...|.+-..+| +|++|+.+|.|++||--.......+.+...+|..|..+.+|..+|+||
T Consensus 432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 432 NFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred ccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 23444444455 899999999999999743344456778889999999999996555555
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.71 E-value=0.022 Score=52.27 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=58.4
Q ss_pred EEEeCCCCCEEEEEecCCcEEE---EECCC-----CcEEEee----eCC--cceEEEEEccC----------CCCEEEEe
Q 013475 195 DVKWSQQGLFVLSCGYDCSSRL---VDVEK-----GIETQSF----REE--LAVRVVKFHPE----------NSNLFLSG 250 (442)
Q Consensus 195 ~l~~~~~~~~l~s~~~d~~v~v---wd~~~-----~~~~~~~----~~~--~~v~~~~~~~~----------~~~~l~~~ 250 (442)
.++.++++.+|+.+..+..+.+ |+... +...... .++ ..|+++.+-|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677889999998877766555 54311 1121111 122 46777776543 13789999
Q ss_pred eCCCcEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 251 GSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 251 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
..+|.|++|.. +|..+..-..|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999986 677666666677788777764
No 382
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.025 Score=48.04 Aligned_cols=275 Identities=13% Similarity=0.050 Sum_probs=151.4
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
-.+-+..+.++ +++...+..+.-++|.|+.+........+-...+--+++.. .|++...+..|.-+.+.|+.+.+
T Consensus 85 ~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCC
Confidence 34567778888 45788888888999999977654433332212244455555 57788888867778889987754
Q ss_pred EE---Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce---EEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 224 ET---QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV---AHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 224 ~~---~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
.- ..+. .......++.+ | ++...+..|+-+.+.|+.+... +.... ....+.++..+++..+++..
T Consensus 160 sP~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy---- 231 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY---- 231 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc----
Confidence 32 2233 23334667776 3 6667777888999999976432 22222 12267777777666666555
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeE-EecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCV-RHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
+..+.+-|....+....+..-+...+.++ .+.-.+++..+...++.+.+.|..+.........+.... ..-.
T Consensus 232 -----~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g--~~a~ 304 (370)
T COG5276 232 -----DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAG--YQAA 304 (370)
T ss_pred -----ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCC--cccc
Confidence 44677777777664444333333333332 233345666666666666666665543221111111000 0111
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+. --|.++.....+ ...+-+....+......+....+.+.+.+-+. +.+.+...++.+.|||
T Consensus 305 gi~--ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~-q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 305 GIR--AYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDT-QIIYSTDYNGGLSIIE 367 (370)
T ss_pred ceE--EecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEe-eEEEEeecCCCEEEEE
Confidence 111 124455554444 34444443333222222222233444444444 4777888888888886
No 383
>PRK10115 protease 2; Provisional
Probab=97.67 E-value=0.076 Score=53.05 Aligned_cols=199 Identities=7% Similarity=0.015 Sum_probs=101.6
Q ss_pred CceeEEEeCCCCCEEEEEec-----CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCC-----CcEEEEE
Q 013475 191 AAVNDVKWSQQGLFVLSCGY-----DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK-----GLLRLWD 260 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd 260 (442)
-.+..+.|+||+++|+.+.. ...|++.|+.++..+...-.... ..++|.+++..++++...+ ..|+.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 34667889999998887643 24688999988864322111112 4599999975566655432 3688888
Q ss_pred CCCC--ceEEEeccCCCCEe-EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC--CcccceeeccccceeeeEEecCC
Q 013475 261 IRTG--KVAHEYIQSLGPIL-DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR--EVPLSKQVYVEAYTCPCVRHHPF 335 (442)
Q Consensus 261 ~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 335 (442)
+.++ +....+........ .+..+.++++++..+. ...++.+.+++... +.............+ .+. +..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 279 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA----SATTSEVLLLDAELADAEPFVFLPRRKDHEY-SLD-HYQ 279 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE----CCccccEEEEECcCCCCCceEEEECCCCCEE-EEE-eCC
Confidence 8877 33333333323333 3333447887765443 11256888988533 221111111222122 122 222
Q ss_pred CCeeEEEeC---CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 336 DPYFVAQSN---GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 336 ~~~l~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
+.+++.... ...|...++... .....+..+.....+..+.+. .+.++++...+|.-+++-+
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 333333222 123433444321 122333333223346667776 3345556666776555433
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.67 E-value=0.034 Score=48.85 Aligned_cols=274 Identities=12% Similarity=0.060 Sum_probs=128.9
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceee-eeccC---CCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR-VLNFH---SAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~h---~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
...+.+|.|..+ .+-+++|. .+.| +...++...-.. ..... .-...+|.|..+ ..++ ++..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~-~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDP-NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSS-S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESS
T ss_pred CCceEEEEEecC-CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecC
Confidence 457899999955 56666665 4543 333333221111 11111 124667777643 3344 44455 5555555
Q ss_pred CCcEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 221 KGIETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 221 ~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
.|+.-..+. .......+....++ ..++ .+..|.|+.=. ..++. ........+.+..+.-+++|++++++..
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~- 164 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR- 164 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETT-
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECc-
Confidence 565444433 23334444444442 3333 34445443321 22322 2223444577888889999999999985
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
...+.-||--... -..........+..+.|.+++...+++ .++.|+.-+...................-.+.
T Consensus 165 ------G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~l 236 (302)
T PF14870_consen 165 ------GNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGIL 236 (302)
T ss_dssp ------SSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EE
T ss_pred ------ccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeE
Confidence 4555567754321 222233345689999999997776655 88899888722221111111111111122378
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecCCceeeEeee---ccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK---AYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.++|.+++...++|+.. . .+...+.|+.-+... .-...++.|.|.... +-++. +.+|.|.-|
T Consensus 237 d~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVL-GQDGVLLRY 301 (302)
T ss_dssp EEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE--STTEEEEE
T ss_pred EEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEE-CCCcEEEEe
Confidence 89999998888877754 3 344455565444433 224568888887664 34444 578887665
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.67 E-value=0.0061 Score=59.06 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=79.9
Q ss_pred cceEEEEeeCCCCCEEEEec------CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC--------
Q 013475 146 KAVNSINWSPTHAHLLASAG------MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-------- 211 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-------- 211 (442)
..+...+++|+ |+.++... .|+.-.||-...+... .....+ .....-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 46788999999 66555443 2444445543223222 222332 247888999998888777532
Q ss_pred ----CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEE---EECCCCce-E---EEecc-CCCCEeE
Q 013475 212 ----CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRL---WDIRTGKV-A---HEYIQ-SLGPILD 279 (442)
Q Consensus 212 ----~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~-~---~~~~~-~~~~i~~ 279 (442)
+.+.+.+++.+.... .....|..+.|+|||..+++.. +|.|++ -....|.. + ..+.. -...+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333444433322 3356799999999985555544 467777 44344431 1 11222 2234688
Q ss_pred EEEeeCCCEEEe
Q 013475 280 VEFTINGKQFVS 291 (442)
Q Consensus 280 ~~~~~~~~~l~~ 291 (442)
+.|..++.+++.
T Consensus 502 l~W~~~~~L~V~ 513 (591)
T PRK13616 502 LDWRTGDSLVVG 513 (591)
T ss_pred ceEecCCEEEEE
Confidence 999999886544
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.0081 Score=50.60 Aligned_cols=219 Identities=10% Similarity=0.036 Sum_probs=122.4
Q ss_pred CCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc-EEEEECCCCceEEEeccCCC--CEeEEEEeeCCCEEEeccCCCC
Q 013475 221 KGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL-LRLWDIRTGKVAHEYIQSLG--PILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
.|+++...........++|+|.-..-++.+-.-|+ ..+||....+....+....+ ..-.-.|++||.+|...-...
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf- 135 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF- 135 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC-
Confidence 45666666666777788999986666666666565 67889888776555433222 122346899999998876522
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC------------------CeEEEeeCCCCccc
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG------------------NYIAIFSSTPPFRL 359 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~i~i~~~~~~~~~ 359 (442)
...-|.|-|||.+.+-...-....+......+.+.+||+.++++..+ -.+.+.|..++..+
T Consensus 136 -d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 136 -DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred -CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 22258999999986543333333445556678899999999886442 22333443333333
Q ss_pred ccceeEeecccccCcEEEEEccCCCEEEEecCCCc-----EEEEecCCceeeEeeec-------cCCceeEEEEcCCCCC
Q 013475 360 DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGS-----IYFYNCRSSELERKIKA-------YEQACIDVAFHPILPN 427 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~ 427 (442)
.+ ..+........+..++..+||..++.+-..|. -.|=-...++.+.-+.. ....|-+|+.+.+.+.
T Consensus 215 ek-h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl 293 (366)
T COG3490 215 EK-HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL 293 (366)
T ss_pred hh-ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence 22 11111112234566777777776665433221 11111123343333321 2234666777755534
Q ss_pred EEEEeeCCCcEEEcC
Q 013475 428 IIGSCSWNGDVSVYE 442 (442)
Q Consensus 428 ~l~s~~~dg~i~iwd 442 (442)
..+|+-..+...+||
T Consensus 294 V~lTSP~GN~~vi~d 308 (366)
T COG3490 294 VALTSPRGNRAVIWD 308 (366)
T ss_pred EEEecCCCCeEEEEE
Confidence 444444455556665
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.65 E-value=0.038 Score=50.12 Aligned_cols=232 Identities=16% Similarity=0.083 Sum_probs=108.0
Q ss_pred CCCEEEEEe-cCCcEEEEECCCC----cEEEeeeC--------CcceEEEEEccCCCCEEEEee------CCCcEEEEEC
Q 013475 201 QGLFVLSCG-YDCSSRLVDVEKG----IETQSFRE--------ELAVRVVKFHPENSNLFLSGG------SKGLLRLWDI 261 (442)
Q Consensus 201 ~~~~l~s~~-~d~~v~vwd~~~~----~~~~~~~~--------~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~ 261 (442)
+.++|+..+ ..+.|+|.|+.+. +..+.++. -.....+..-|+| .+++++- .-|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 456777776 5789999999843 44444431 1233445556775 6777642 2246888998
Q ss_pred CCCceEEEeccCCC---CEeEEEEeeCCCEEEeccCC-------------CCCcCCCCeEEEEeCCCCcccceeeccccc
Q 013475 262 RTGKVAHEYIQSLG---PILDVEFTINGKQFVSSSDV-------------SGSNMSENSIVVWDVSREVPLSKQVYVEAY 325 (442)
Q Consensus 262 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~~-------------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 325 (442)
++.+....+..... .-..+-|.|..+.++++.-. ........++.+||+.+.+.++.+......
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88887777654322 34567788888888876531 001113579999999999998888877654
Q ss_pred e-eeeEEe--cCCCCeeEE-EeCCCeEEEeeCCCCccc--ccceeEeec--------c-------cccCcEEEEEccCCC
Q 013475 326 T-CPCVRH--HPFDPYFVA-QSNGNYIAIFSSTPPFRL--DKFKRYESH--------G-------VSGFPIKCSFSLDGE 384 (442)
Q Consensus 326 ~-~~~~~~--~~~~~~l~~-~~~~~~i~i~~~~~~~~~--~~~~~~~~~--------~-------~~~~v~~~~~s~~g~ 384 (442)
. ...+.| .|+..+-++ +.-...|..|-....... +++...... . ....++.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3 334544 455554333 334555555543222111 111111100 0 024578999999999
Q ss_pred EEEEec-CCCcEEEEecCCc---eeeEeeec----------------cCCceeEEEEcCCCCCEEEEee
Q 013475 385 KLVSGS-SDGSIYFYNCRSS---ELERKIKA----------------YEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 385 ~l~~g~-~dg~i~iwd~~~~---~~~~~~~~----------------~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
+|+..+ ..|.|+.||+... +++.++.- -.+...-+..|-||.++.+|.|
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 998765 5899999999763 33333321 0123356778888865555544
No 388
>PHA02713 hypothetical protein; Provisional
Probab=97.61 E-value=0.0098 Score=57.76 Aligned_cols=226 Identities=11% Similarity=0.097 Sum_probs=106.6
Q ss_pred cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC------CcEEEEECCCCcEEEeee--CCcceEEEEEc
Q 013475 169 SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD------CSSRLVDVEKGIETQSFR--EELAVRVVKFH 240 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~ 240 (442)
.+..||..+.....+..+...... .+++. -++...+.||.+ ..+..||..++.-...-. ....-.+++..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 577788765544433333321111 12222 256677777753 347788887765322211 11111122222
Q ss_pred cCCCCEEEEeeCCC-----cEEEEECCCCceEE--EeccCCCCEeEEEEeeCCCEEEeccCCCCC---------------
Q 013475 241 PENSNLFLSGGSKG-----LLRLWDIRTGKVAH--EYIQSLGPILDVEFTINGKQFVSSSDVSGS--------------- 298 (442)
Q Consensus 241 ~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~--------------- 298 (442)
+ +.+.+.||.++ .+..||..+.+-.. .+.........+ .-+|+..+.|+.....
T Consensus 351 -~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 -D-DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred -C-CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence 2 37778887754 48889987654221 111111111112 2367777777641000
Q ss_pred -cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC------CeEEEeeCCCCcccccceeEeecccc
Q 013475 299 -NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG------NYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 299 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
...-..+..||..+.+-........ .....-...-+++.+++|+.+ ..+..||..+......+..+....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-- 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-- 503 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--
Confidence 0001357788887653211111111 111111222345666666543 246778877621121112211111
Q ss_pred cCcEEEEEccCCCEEEEecCCC--cEEEEecCCcee
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDG--SIYFYNCRSSEL 405 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg--~i~iwd~~~~~~ 405 (442)
... .+ -.-+|++.++|+.+| .+..||..+.+-
T Consensus 504 ~~~-~~-~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 504 SAL-HT-ILHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ccc-ee-EEECCEEEEEeeecceeehhhcCcccccc
Confidence 111 11 122788888999888 677777776543
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.61 E-value=0.018 Score=50.66 Aligned_cols=147 Identities=17% Similarity=0.254 Sum_probs=92.8
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccccee----
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ---- 319 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---- 319 (442)
++.|+.|.++| |+++++........+. +...|..+...++-+.+++-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc--------CCccEEEEchhhcccccccccc
Confidence 47788888888 9999983322222222 223499999999888888887 899999999874433311
Q ss_pred ---------eccccceeeeEE--ecCCCCeeEEEeCCCeEEEeeCCCCccc--ccceeEeecccccCcEEEEEccCCCEE
Q 013475 320 ---------VYVEAYTCPCVR--HHPFDPYFVAQSNGNYIAIFSSTPPFRL--DKFKRYESHGVSGFPIKCSFSLDGEKL 386 (442)
Q Consensus 320 ---------~~~~~~~~~~~~--~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l 386 (442)
.......+..++ -...+...++....+.|.+|........ ..++.+ .....+..++|. ++.|
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~---~lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI---SLPDPPSSIAFL--GNKI 151 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE---EcCCCcEEEEEe--CCEE
Confidence 112222344444 2344555555666668888887764221 222333 334667888888 5678
Q ss_pred EEecCCCcEEEEecCCceee
Q 013475 387 VSGSSDGSIYFYNCRSSELE 406 (442)
Q Consensus 387 ~~g~~dg~i~iwd~~~~~~~ 406 (442)
+.|..++ ..+.|+.++...
T Consensus 152 ~v~~~~~-f~~idl~~~~~~ 170 (275)
T PF00780_consen 152 CVGTSKG-FYLIDLNTGSPS 170 (275)
T ss_pred EEEeCCc-eEEEecCCCCce
Confidence 8877554 788888866543
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0024 Score=63.15 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCCEEEEEecCCcEEEEECCCCcE--EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEe
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIE--TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPIL 278 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 278 (442)
.+..++.|+..|.+...|+...-. .+.....++|++++|+.+| .+++.|-.+|.|.+||+..++.++.+..+..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455788888899999888876532 2333367899999999996 8899999999999999999999888887776665
Q ss_pred EEEE---eeCCCEEEeccC
Q 013475 279 DVEF---TINGKQFVSSSD 294 (442)
Q Consensus 279 ~~~~---~~~~~~l~~~~~ 294 (442)
.+-+ ..++..++++..
T Consensus 177 ~vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred eEEEEEEeCCCcEEEEccC
Confidence 5543 445566666665
No 391
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.50 E-value=0.052 Score=46.60 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=132.1
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcc-----cCCcceeeeecc-----CCCceeEEEeCCCCC------------E
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVW-----SRDQKLARVLNF-----HSAAVNDVKWSQQGL------------F 204 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~-----h~~~v~~l~~~~~~~------------~ 204 (442)
.-+.|+|+|. +.+-++....+...+||.. .-...++..+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3478999998 7777787788999999985 112234444442 234577788775332 3
Q ss_pred EEEEecCCcEEEEECCCCcE-----EEeee--C-CcceEEEEEccC--CCCEEEEeeCCCcEEEEECCCCceEEEeccCC
Q 013475 205 VLSCGYDCSSRLVDVEKGIE-----TQSFR--E-ELAVRVVKFHPE--NSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~-----~~~~~--~-~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (442)
++.+++||+|.-|...-+.. ...+. . ......+++... +..+.++--..++|.+||-.- +.+..-....
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCcc
Confidence 67788999999998543322 12222 1 222345555533 334444445577888887532 2211100000
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEE-EeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeC
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVV-WDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~ 353 (442)
.+-.-..|.|-+- -.. .+.+.+ |=.+ .++...=+.+..-+.|-+||.
T Consensus 182 DP~iPagyAPFnI-qni----------g~~lyVtYA~q---------------------d~~~~d~v~G~G~G~VdvFd~ 229 (336)
T TIGR03118 182 DPALPAGYAPFNV-QNL----------GGTLYVTYAQQ---------------------DADRNDEVAGAGLGYVNVFTL 229 (336)
T ss_pred CCCCCCCCCCcce-EEE----------CCeEEEEEEec---------------------CCcccccccCCCcceEEEEcC
Confidence 0100001111110 000 111111 1111 111112223344567777777
Q ss_pred CCCcccccceeEeecccccCcEEEEEcc------CCCEEEEecCCCcEEEEecCCceeeEeeeccC------CceeEEEE
Q 013475 354 TPPFRLDKFKRYESHGVSGFPIKCSFSL------DGEKLVSGSSDGSIYFYNCRSSELERKIKAYE------QACIDVAF 421 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~ 421 (442)
..... +.+.....-...+.++..| .|.+|+---.||+|..||..+++.+..+.... ..++.|+|
T Consensus 230 ~G~l~----~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 230 NGQLL----RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred CCcEE----EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeee
Confidence 66433 2222222223455666655 46777777779999999999998887776543 35678888
Q ss_pred cCC-----CCCEEEEeeCC
Q 013475 422 HPI-----LPNIIGSCSWN 435 (442)
Q Consensus 422 ~p~-----~~~~l~s~~~d 435 (442)
... ...++++++-+
T Consensus 306 Gng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 306 GNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred CCCcCCCCcceEEEEeCCC
Confidence 752 12455555533
No 392
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.013 Score=46.99 Aligned_cols=176 Identities=12% Similarity=0.042 Sum_probs=98.0
Q ss_pred CCEEEEeeCC--CcEEEEECCCCceEEEeccCCCCEe--EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccccee
Q 013475 244 SNLFLSGGSK--GLLRLWDIRTGKVAHEYIQSLGPIL--DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ 319 (442)
Q Consensus 244 ~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 319 (442)
..++.+.+.- ..|++||+++++.+.+-.-....+. .+.-..|.-+.++-. ++.-..||.++-+.+...
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--------egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--------EGVAFKYDADTLEELGRF 127 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec--------cceeEEEChHHhhhhccc
Confidence 3667666553 4699999999988765543311111 111111222333333 899999999887777665
Q ss_pred eccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 320 VYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
.+...+ .....+++.++.+....+++.-|..+-.....+........-..+..+.|- +|...|-.-.+..|...|
T Consensus 128 ~y~GeG----WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 128 SYEGEG----WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ccCCcc----eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 554432 334456667777777777777776554333222221111111112223332 455554444445555666
Q ss_pred cCCceeeEeee------------ccCCceeEEEEcCCCCCEEEEe
Q 013475 400 CRSSELERKIK------------AYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 400 ~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
.++|+.+..+. .|..-.+.+++.|++.++++||
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66666554432 2345678899999987788876
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0033 Score=57.38 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=94.5
Q ss_pred EEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCC-------EEEEEecCCcEEEEECCCCcE--E-----E
Q 013475 161 LASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL-------FVLSCGYDCSSRLVDVEKGIE--T-----Q 226 (442)
Q Consensus 161 l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~s~~~d~~v~vwd~~~~~~--~-----~ 226 (442)
|.++.....++-.|+ ..++.+...+.|.. |+-+.+.|+.+ .-+.|-.|+.|.-||.+-... + +
T Consensus 349 l~~~~~~~~l~klDI--E~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDI--ERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeec--ccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 344445556666677 44577777776655 78888888642 223455688899999874322 1 1
Q ss_pred eeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE-EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 227 SFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA-HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 227 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
.+.......|.+-..+ -+|++|+.+|.|++||- .+... ..+.+-..+|..+..+.+|++|+..+ +..+
T Consensus 426 qy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--------~tyL 494 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--------KTYL 494 (644)
T ss_pred ccccccccceeeecCC--ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--------ccEE
Confidence 2224455666666554 58999999999999996 44433 34566677999999999999999888 7888
Q ss_pred EEEeCC
Q 013475 306 VVWDVS 311 (442)
Q Consensus 306 ~iwd~~ 311 (442)
.+.++.
T Consensus 495 lLi~t~ 500 (644)
T KOG2395|consen 495 LLIDTL 500 (644)
T ss_pred EEEEEe
Confidence 888764
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.47 E-value=0.054 Score=54.19 Aligned_cols=235 Identities=14% Similarity=0.149 Sum_probs=115.7
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCC--------ceeEEEeCC----------------CCCEEEEEecCCcE
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSA--------AVNDVKWSQ----------------QGLFVLSCGYDCSS 214 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~--------~v~~l~~~~----------------~~~~l~s~~~d~~v 214 (442)
..|+.++.++.|.-.|..++ +.+..+..... ....+.+.. .+..++.++.|+.|
T Consensus 195 g~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 35666666777777777544 44444331111 112233321 23478888889999
Q ss_pred EEEECCCCcEEEeeeCCcceE-------------EEEEccC-CCCEEEEeeC----------CCcEEEEECCCCceEEEe
Q 013475 215 RLVDVEKGIETQSFREELAVR-------------VVKFHPE-NSNLFLSGGS----------KGLLRLWDIRTGKVAHEY 270 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 270 (442)
.-.|.++|+.+..|..++.+. .+.-.|- -...+++|+. +|.|+-+|.++|+.+..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999998876544331 0011110 0135556642 688999999999998877
Q ss_pred ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC-eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEE
Q 013475 271 IQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN-SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIA 349 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 349 (442)
....-..... ...++....++. +. ...-+|.+.+....-. .. .. ..+....+........+.|.
T Consensus 353 ~~g~p~~~~~--~~~g~~~~~gg~-------n~W~~~s~D~~~glvy~pt--Gn--~~--pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 353 DPGNPDPTAP--PAPGETYTRNTP-------NSWSVASYDEKLGLVYLPM--GN--QT--PDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred ecCCCCcccC--CCCCCEeccCCC-------CccCceEEcCCCCeEEEeC--CC--cc--ccccCCccccCcccccceEE
Confidence 5321111100 013332222221 11 2223333332211000 00 00 00000000000011234555
Q ss_pred EeeCCCCcccccceeEeec----ccccCcEEEEEcc-CCC---EEEEecCCCcEEEEecCCceeeEeee
Q 013475 350 IFSSTPPFRLDKFKRYESH----GVSGFPIKCSFSL-DGE---KLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~-~g~---~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
-.|.++++..+.++..... .......-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 5666666555444331110 0011112223333 553 88999999999999999998876543
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.41 E-value=0.032 Score=54.23 Aligned_cols=236 Identities=14% Similarity=0.065 Sum_probs=118.8
Q ss_pred CCEEEEecCC------CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC------CcEEEEECCCCcEE
Q 013475 158 AHLLASAGMD------QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD------CSSRLVDVEKGIET 225 (442)
Q Consensus 158 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~ 225 (442)
+.+++.|+.+ ..+..||..++.......+. +...-.++++. ++...++|+.| .++..||..+++-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 6677777776 36788888666444444444 22333444444 45778888888 35778888887644
Q ss_pred EeeeCCcceEEEEEccCCCCEEEEeeCCCc-----EEEEECCCCceEEEeccCCCCEeE-EEEeeCCCEEEeccCCCCCc
Q 013475 226 QSFREELAVRVVKFHPENSNLFLSGGSKGL-----LRLWDIRTGKVAHEYIQSLGPILD-VEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~~~~~ 299 (442)
..-.-...-..+....-++.+.++||.||. |..||..+.+-...-.-.. .... -...-+|+..++|+.... .
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~-~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS-S 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCC-c
Confidence 322211111111111113488889998864 7778877654211111111 1111 122336777787774111 0
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC-----eEEEeeCCCCcccccceeEeecccccCc
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN-----YIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
..-..+..||..+..-...-.......... ...-++..+++|+.++ .+..||..+..-... ....... ..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~r--s~~ 516 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPR--SAV 516 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCcccc--ccc
Confidence 013678889988754222111111111111 2223466667776654 366677765432211 1011011 001
Q ss_pred EEEEEccCCCEEEEecCCCc-----EEEEecCCc
Q 013475 375 IKCSFSLDGEKLVSGSSDGS-----IYFYNCRSS 403 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~-----i~iwd~~~~ 403 (442)
. ...-+++..++|+.||. |..||..+.
T Consensus 517 -g-~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 517 -G-VVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred -c-EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 1 11226677788887764 555665443
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.38 E-value=0.056 Score=44.35 Aligned_cols=218 Identities=13% Similarity=0.081 Sum_probs=116.0
Q ss_pred EEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEcc-CCCCEEEEe-eCCCcEEEEECCC--CceEEEec-----cCC
Q 013475 204 FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHP-ENSNLFLSG-GSKGLLRLWDIRT--GKVAHEYI-----QSL 274 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~-~~dg~i~iwd~~~--~~~~~~~~-----~~~ 274 (442)
++.+--..+.|.-||+.+.+..+.--.......+.+-- ++...++++ +..-.|.-||... .....++. ...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kk 108 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKK 108 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHh
Confidence 44443445667778888765443322222233333322 222333333 3333455576332 22223321 113
Q ss_pred CCEeEEEEeeCCCEEEeccCCCC--CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE-EEeCCCeEEEe
Q 013475 275 GPILDVEFTINGKQFVSSSDVSG--SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV-AQSNGNYIAIF 351 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~i~ 351 (442)
...++-..+|+|+++.-.-.... .-...|.++.|-....-.. ....-.-...++|+.+.+.+. +-+.+-.|.-|
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~---i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVEL---IWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCcee---eehhccCCccccccccCcEEEEEccCceEEeee
Confidence 35566677899998543322100 0011355566654432111 111112234577887766554 45667778777
Q ss_pred e--CCCCcccccceeEeecc----cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCC
Q 013475 352 S--STPPFRLDKFKRYESHG----VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 352 ~--~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 424 (442)
| ..++.....-..+.... ..-..-.+++..+|++.++.-..|+|..+|..+|+.+.+++-....|++++|--.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 7 44433222111111110 1122334666778998888888999999999999999999988899999999654
No 397
>PHA02713 hypothetical protein; Provisional
Probab=97.35 E-value=0.0098 Score=57.76 Aligned_cols=192 Identities=7% Similarity=-0.031 Sum_probs=90.8
Q ss_pred CCEEEEecCC------CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC-----cEEEEECCCCcEEE
Q 013475 158 AHLLASAGMD------QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC-----SSRLVDVEKGIETQ 226 (442)
Q Consensus 158 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~ 226 (442)
+.+++.|+.+ ..+..||..+........+.........+. -+++..+.||.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 6677777753 347778875553333332221111222222 2677777787654 47889988764332
Q ss_pred eee--CCc-ceEEEEEccCCCCEEEEeeCCC-----------------------cEEEEECCCCceEEEeccCCCCEeEE
Q 013475 227 SFR--EEL-AVRVVKFHPENSNLFLSGGSKG-----------------------LLRLWDIRTGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 227 ~~~--~~~-~v~~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~i~~~ 280 (442)
.-. ... ....+.+ + +.+.+.||.++ .+..||..+.+-...-..........
T Consensus 382 ~~~mp~~r~~~~~~~~--~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 382 LPDMPIALSSYGMCVL--D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred CCCCCcccccccEEEE--C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 212 111 1112222 3 36777777542 47778877654321111111111111
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC-CcccceeeccccceeeeEEecCCCCeeEEEeCCC--eEEEeeCCCC
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN--YIAIFSSTPP 356 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~i~~~~~~ 356 (442)
...-+++..+.|+... .......+..||..+ .+-. ............-...-+++.+++|+.++ .+..||..+.
T Consensus 459 ~~~~~~~IYv~GG~~~-~~~~~~~ve~Ydp~~~~~W~-~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 459 VVSHKDDIYVVCDIKD-EKNVKTCIFRYNTNTYNGWE-LITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEECCEEEEEeCCCC-CCccceeEEEecCCCCCCee-EccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 2233677777776410 000013467899886 3311 11111111111111222677778887777 5556665543
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0012 Score=65.16 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=78.9
Q ss_pred eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 326 TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
.+..++..-.+..+++|+..|.+..+|..+.... ...+....+.|++++|+.+|+.++.|-.+|.|.+||+..++.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~----~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP----LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccch----hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence 3334444445667888999999999998876332 122334457799999999999999999999999999999999
Q ss_pred eEeeeccCCceeE---EEEcCCCCCEEEEeeCCCc
Q 013475 406 ERKIKAYEQACID---VAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 406 ~~~~~~~~~~v~~---~~~~p~~~~~l~s~~~dg~ 437 (442)
++.+..|..+.++ +.+..++ ..+.++...|.
T Consensus 165 l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs 198 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS 198 (1206)
T ss_pred eeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc
Confidence 8888776655444 4445555 57888777775
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.018 Score=48.97 Aligned_cols=162 Identities=5% Similarity=-0.001 Sum_probs=109.3
Q ss_pred ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEE
Q 013475 271 IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAI 350 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 350 (442)
.+....+.++.|+|+.+.|++... ...-.++=-..+..+.++....-.....+.+.-++.+.++--.++.+++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n-------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN-------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred ccccccccceeeCCCcceEEEecC-------CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEE
Confidence 444556999999999999998886 5666666556677777777666666777888889999999889999999
Q ss_pred eeCCCCcccccceeE----eeccc-ccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee---eEeeecc-------CCc
Q 013475 351 FSSTPPFRLDKFKRY----ESHGV-SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL---ERKIKAY-------EQA 415 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~-------~~~ 415 (442)
+.++........+.. ..... +...-.++|++....|+..-+-.-+.||.+..... +.....+ -..
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 888766443222221 11111 23356799999988888888877777877653321 1111111 235
Q ss_pred eeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 416 CIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
|.++.|++..+.+|+-+.+++.+.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLL 258 (316)
T ss_pred cccceecCCCCcEEEEecCCceEE
Confidence 778889876656777766665543
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.25 E-value=0.099 Score=44.47 Aligned_cols=194 Identities=11% Similarity=0.031 Sum_probs=113.9
Q ss_pred cceeccccc-ccceEEEEeeCCCCCEEEEecCCC--cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 136 RLSTALCHH-TKAVNSINWSPTHAHLLASAGMDQ--SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 136 ~~~~~l~~h-~~~V~~~~~s~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
+.+.++... ..-...+.|..+ +.++-+.+.-| .|+.+|+.+++......+.. .----.++...| +...-.=.++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d-~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGD-KLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETT-EEEEEESSSS
T ss_pred EEEEECCCCCcccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECC-EEEEEEecCC
Confidence 344444322 233445777666 77777777666 78889986664333333331 112223333333 3333334588
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC-----CCCEeEEEEeeCCC
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-----LGPILDVEFTINGK 287 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~ 287 (442)
...+||.++.+.+.++...+.-+.++. ++..+ +.......|+++|..+.+....+... -..++.+.|- +|.
T Consensus 111 ~~f~yd~~tl~~~~~~~y~~EGWGLt~--dg~~L-i~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYPGEGWGLTS--DGKRL-IMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEEETTTTEEEEEEE-SSS--EEEE--CSSCE-EEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred eEEEEccccceEEEEEecCCcceEEEc--CCCEE-EEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999999999997777788884 44444 44444568999999888776665432 2256677776 777
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeec--------------cccceeeeEEecCCCCeeEEEe
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY--------------VEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
..+-.-. ...|...|..++.....+.. ....-...+++.|....|.+.+
T Consensus 187 IyANVW~-------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQ-------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETT-------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCC-------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7776665 78888889888875543321 1134577899988777666544
No 401
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.0011 Score=53.82 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=80.1
Q ss_pred EecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE-Eeee-CCcceEEEEEc
Q 013475 163 SAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET-QSFR-EELAVRVVKFH 240 (442)
Q Consensus 163 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~-~~~~v~~~~~~ 240 (442)
.-+.||.|+-+++......+.... .|...-.- ..-+..++.|+.+|.|++|+....-.. ..+. ....+.++.-.
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~-~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSER-FIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhh-hhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 335578888777743322222211 13332112 223457888999999999988732111 1111 22333333323
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-CCEeEEEEeeCCCEEEec--cCCCCCcCCCCeEEEEeCCC
Q 013475 241 PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-GPILDVEFTINGKQFVSS--SDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 241 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~~~~~~~~d~~i~iwd~~~ 312 (442)
-+...+..+++.||.|+.|++.-++.+.....|. .++..+..+..++.+..+ +. |..++.|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-------d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-------DRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-------chhhhhcchhh
Confidence 2223588999999999999998887776666665 455555555555555555 44 66666666654
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.18 E-value=0.18 Score=45.98 Aligned_cols=227 Identities=16% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCEEEEec-CCCcEEEEEcccCC--cceeeeecc---CC----CceeEEEeCCCCCEEEEEec------CCcEEEEECCC
Q 013475 158 AHLLASAG-MDQSICIWNVWSRD--QKLARVLNF---HS----AAVNDVKWSQQGLFVLSCGY------DCSSRLVDVEK 221 (442)
Q Consensus 158 ~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~---h~----~~v~~l~~~~~~~~l~s~~~------d~~v~vwd~~~ 221 (442)
.++|+..+ ..+.|.|.|+.+.. .++.+++.. +. ..-..+---|+|..++++-. -|-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56666655 77899999996432 234444432 11 12223334568888888633 25688888888
Q ss_pred CcEEEeeeC----CcceEEEEEccCCCCEEEEee--------------------CCCcEEEEECCCCceEEEeccCCC--
Q 013475 222 GIETQSFRE----ELAVRVVKFHPENSNLFLSGG--------------------SKGLLRLWDIRTGKVAHEYIQSLG-- 275 (442)
Q Consensus 222 ~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~-- 275 (442)
.+.....+. ...-..+-|.|. .+.+++.. ...++.+||+.+.+.++++.....
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp --EEEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777776663 223456778886 47777753 235799999999999998875543
Q ss_pred CEeEEEEeeC--CCEEEeccCCCCCcCCCCeEEEEeC-CCCcc----cceeec--------cc--------cceeeeEEe
Q 013475 276 PILDVEFTIN--GKQFVSSSDVSGSNMSENSIVVWDV-SREVP----LSKQVY--------VE--------AYTCPCVRH 332 (442)
Q Consensus 276 ~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~-~~~~~----~~~~~~--------~~--------~~~~~~~~~ 332 (442)
....+.|..+ ..+=+++..+ ..+|..|-- ..+.- +..+.. .. ..-++.+..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aL------ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCAL------SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred ceEEEEecCCCCccceEEEEec------cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 3456777543 3333333221 445544433 33221 111100 01 235788999
Q ss_pred cCCCCeeEEEe-CCCeEEEeeCCCCcccccceeEe--------------ecccccCcEEEEEccCCCEEEEecC
Q 013475 333 HPFDPYFVAQS-NGNYIAIFSSTPPFRLDKFKRYE--------------SHGVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 333 ~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
+.|.++|.+.+ ..|.|+.||+............. +....+...-+..|.||+.|+..++
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999987755 67999999999876654332221 1111223456788999998887653
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.12 E-value=0.25 Score=46.49 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=75.4
Q ss_pred cceEEEEeeCCC----CCEEEEecCCCcEEEEEcccC---Ccceeeeec-cCCC----ceeEEEeCCCCCEEEEEecCCc
Q 013475 146 KAVNSINWSPTH----AHLLASAGMDQSICIWNVWSR---DQKLARVLN-FHSA----AVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 146 ~~V~~~~~s~~~----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~h~~----~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.-|..+.|.|-+ ..+|| ....+.|.||.+.-. ..+....-. .... --..+.|+|....|++-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEE-EeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 458899999851 23454 455789999998521 112221111 1111 1246789998888777665554
Q ss_pred EEEEECCC--CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 214 SRLVDVEK--GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 214 v~vwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
-.++++.. .+....++..+-|.|.+|..||.+++++.+..=.-++||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 45566543 344455668899999999999977777666666788998643
No 404
>PRK13684 Ycf48-like protein; Provisional
Probab=97.11 E-value=0.2 Score=45.32 Aligned_cols=274 Identities=9% Similarity=0.006 Sum_probs=134.6
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeee---eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV---LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
...+++|.|..+ .+-++.|. +|.| |...++...-... +......+.++.|..+ ..+++ +..+.|.. ..+.
T Consensus 45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 567899999855 66676665 4543 3332221111111 1112334778888643 33443 44554332 2233
Q ss_pred CcEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 222 GIETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 222 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
|+.-..+. .......+.....+ ..+++ +..|.|..=+ ..++.=..+ ....+.+.++.+.+++.+++++.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~--- 191 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPG-TAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS--- 191 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCC-cceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC---
Confidence 33322221 11122222222221 33333 3444443321 122221111 22245788899999988877776
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
.|.+..-.-..++............+..+.+.+++..++++ ..+.+++-..+.+........ ........+..
T Consensus 192 -----~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~ 264 (334)
T PRK13684 192 -----RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII-PEITNGYGYLD 264 (334)
T ss_pred -----CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC-Cccccccceee
Confidence 56554321111222223333445678889999998877765 456654433333332221111 00011233667
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCCceeeEeeec---cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA---YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.+.+++..+++| .+|.|. .....++.-..... -....+.+.|..++ ..+++| ..|.|.-|+
T Consensus 265 v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 265 LAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KGFVLG-QRGVLLRYV 329 (334)
T ss_pred EEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC-ceEEEC-CCceEEEec
Confidence 8899888766655 466554 44455554443322 22357788887765 465554 688877653
No 405
>PHA03098 kelch-like protein; Provisional
Probab=97.09 E-value=0.047 Score=53.22 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=72.9
Q ss_pred CCEEEEecCCC------cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-----CcEEEEECCCCcEEE
Q 013475 158 AHLLASAGMDQ------SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-----CSSRLVDVEKGIETQ 226 (442)
Q Consensus 158 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~ 226 (442)
+.+++.|+.++ .+..||..+........+.........+.+ +++.++.||.+ ..+..||..+++-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 56667776543 567788755544333222211122222222 66777777765 357788887765332
Q ss_pred eee--CCcceEEEEEccCCCCEEEEeeCC------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 227 SFR--EELAVRVVKFHPENSNLFLSGGSK------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 227 ~~~--~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
.-. ....-.+++.. + +.+++.||.+ ..+..||+.+++-...-..............+++.++.|+.....
T Consensus 373 ~~~lp~~r~~~~~~~~-~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 373 EPPLIFPRYNPCVVNV-N-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred CCCcCcCCccceEEEE-C-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 221 11111222222 3 3677777632 358889987654321111010111111223466677777641100
Q ss_pred c-CCCCeEEEEeCCCCc
Q 013475 299 N-MSENSIVVWDVSREV 314 (442)
Q Consensus 299 ~-~~d~~i~iwd~~~~~ 314 (442)
. ..-..+.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCcccceEEEecCCCCc
Confidence 0 001238888987654
No 406
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.96 E-value=0.003 Score=37.81 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=29.8
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3355889999999999999999999999998 4543
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.95 E-value=0.11 Score=50.62 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=113.3
Q ss_pred CCCEEEEEecC------CcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCC-C-----cEEEEECCCCce
Q 013475 201 QGLFVLSCGYD------CSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSK-G-----LLRLWDIRTGKV 266 (442)
Q Consensus 201 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~ 266 (442)
.+.+++.|+.+ ..+..||..+++...... ....-.++++.. ..++++||.| | .+..||.++++-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 45566677766 367888988875444333 333445555554 3788899988 3 577888887653
Q ss_pred EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-
Q 013475 267 AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG- 345 (442)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 345 (442)
...-.-.......-.-.-+|...++|+.. + ...-.++-.||..+.+-...-... ......-...-++...++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~d-g-~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFD-G-EKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccc-c-ccccccEEEecCCCCcccccCCCC-cceeeeEEEEECCEEEEEcCcCC
Confidence 22111111111111112367888888861 0 001235777887765421111111 1122222233356677776644
Q ss_pred -----CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCc-----EEEEecCCcee--eEeeeccC
Q 013475 346 -----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGS-----IYFYNCRSSEL--ERKIKAYE 413 (442)
Q Consensus 346 -----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-----i~iwd~~~~~~--~~~~~~~~ 413 (442)
+.+..||..+..-... ....... ... . .-.-++.+.+.|+.|+. |..||..+.+- +..+....
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~-~~M~~~R--~~~-g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLI-APMNTRR--SGF-G-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CccccceEEEEcCCCCceeec-CCccccc--ccc-e-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 4567777766533211 1111100 111 1 22236778888887763 67788766442 22222222
Q ss_pred CceeEEEEcCCCCCEEEEeeCCCc
Q 013475 414 QACIDVAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 414 ~~v~~~~~~p~~~~~l~s~~~dg~ 437 (442)
..+..+.+. ..+.+.|+.||.
T Consensus 514 s~~g~~~~~---~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 514 SAVGVVVLG---GKLYAVGGFDGN 534 (571)
T ss_pred ccccEEEEC---CEEEEEecccCc
Confidence 222222222 257888888864
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.88 E-value=0.33 Score=43.92 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=42.5
Q ss_pred cCcEEEEEcc-------CCCEEEEecCCCcEEEEecCCceeeE---e-eeccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 372 GFPIKCSFSL-------DGEKLVSGSSDGSIYFYNCRSSELER---K-IKAYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 372 ~~v~~~~~s~-------~g~~l~~g~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
..++.+.|-. +|.+|++.-..+.|....++.+..+. . +......+.+|++.||| .++++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-eEEEEECCCCeEe
Confidence 3355555542 45677777777788888886543222 1 22344589999999999 6888877888874
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.79 E-value=0.072 Score=49.89 Aligned_cols=154 Identities=14% Similarity=0.221 Sum_probs=92.7
Q ss_pred cccccccceEEEEeeCCCCCEEEEec--CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC----CCEEEEEecCCc
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAG--MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ----GLFVLSCGYDCS 213 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~~~d~~ 213 (442)
.|..--.+|..++|... .+.++|.- .+|.+++=| ...+. .-+.|..+.|.|- ...|++......
T Consensus 14 aL~qAiHPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd-----s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 14 ALHQAIHPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD-----SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred HHHhhhccccceEecCC-CEEEEEeeeeeCCccccCC-----ccEee----ccceeeeeeecCcccCCCCceEEEeccce
Confidence 34444568889999854 55555542 344444422 23333 3356899999983 335666677899
Q ss_pred EEEEECCC-----CcEEE----eeeCCc--ceEEEEEccCCCCEEEEeeCCCcEEEEECCCC--ceEEEeccCCCCEeEE
Q 013475 214 SRLVDVEK-----GIETQ----SFREEL--AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG--KVAHEYIQSLGPILDV 280 (442)
Q Consensus 214 v~vwd~~~-----~~~~~----~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~ 280 (442)
|.||.+.- ++.+. .+...- -...+.|||.. .+|++-.....-.+++++.. +....+ ...+.|.|.
T Consensus 84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCA 161 (671)
T PF15390_consen 84 VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCA 161 (671)
T ss_pred EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEE
Confidence 99998852 22221 111111 23567899984 66665555444455565533 233334 455899999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
+|..||+.|+.+-. +.=.-++||-.
T Consensus 162 CWT~DG~RLVVAvG------SsLHSyiWd~~ 186 (671)
T PF15390_consen 162 CWTKDGQRLVVAVG------SSLHSYIWDSA 186 (671)
T ss_pred EecCcCCEEEEEeC------CeEEEEEecCc
Confidence 99999999887653 13455677754
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.016 Score=57.94 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=95.8
Q ss_pred CceeEEEeCCCCCEEEEE--ecCCcEEEEECCCCcEEE-----ee-------eCCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 191 AAVNDVKWSQQGLFVLSC--GYDCSSRLVDVEKGIETQ-----SF-------REELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~--~~d~~v~vwd~~~~~~~~-----~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
-.|..+...+|+...++. +.+-.|..||+++-.... -+ .......++.|+|.-....+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345556666676554443 334478899987642211 11 1234467888998766667788889999
Q ss_pred EEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC--cccceeeccccceeeeEEecC
Q 013475 257 RLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE--VPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~ 334 (442)
++..+........--.-....++++|+|.|+.++.|.. .|++.-|...-. ..+......+...+.++.|-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n-------nGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN-------NGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC-------CCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence 99877543322111123357899999999999999998 999999876543 233333334467899999988
Q ss_pred CCCeeEEE
Q 013475 335 FDPYFVAQ 342 (442)
Q Consensus 335 ~~~~l~~~ 342 (442)
...++++-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 88877763
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.75 E-value=0.45 Score=43.79 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=79.0
Q ss_pred cceEEEEeeCCCCCEEEEec-----------CCC-cEEEEEcccCCcc--eeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 146 KAVNSINWSPTHAHLLASAG-----------MDQ-SICIWNVWSRDQK--LARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~-----------~dg-~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
.....|+|.++ |+++++-. ..+ .|.+++-.++..+ ....+.........|++.+++ +++ ++..
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 44578999999 88776642 223 6777764333222 223343334456889999888 444 4444
Q ss_pred CcEEEEECCCC-----cEE---EeeeC-----CcceEEEEEccCCCCEEEEeeC-------------------CCcEEEE
Q 013475 212 CSSRLVDVEKG-----IET---QSFRE-----ELAVRVVKFHPENSNLFLSGGS-------------------KGLLRLW 259 (442)
Q Consensus 212 ~~v~vwd~~~~-----~~~---~~~~~-----~~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~iw 259 (442)
...++.|.+.. +.. ..+.. ......++|.|+| .+.++-+. .|.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 43334354321 211 11222 2447789999997 55444331 1445566
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
|...++. ..+.........++|+++|+++++-.
T Consensus 170 ~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 6554443 22322223456899999998887654
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.70 E-value=0.006 Score=36.51 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=29.9
Q ss_pred CCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 190 SAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 190 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
...|.+++|+|...+|+.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999999 5443
No 413
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.69 E-value=0.36 Score=42.51 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=95.1
Q ss_pred cEEEEECCCCcEEEeee-------CCcceEEEEEccCCC-----CEEEEeeCCCcEEEEECCCCceEEEeccCCC-----
Q 013475 213 SSRLVDVEKGIETQSFR-------EELAVRVVKFHPENS-----NLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG----- 275 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 275 (442)
+|.+||+.+++.++.+. ..+.+..+.+..... ...++-...+.|.++|+.+++.-+.+..+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 57889999998888776 245677888876321 2334444456899999998876544432211
Q ss_pred --------------CEeEEEEee---CCCEEEeccCCCCCcCCCCeEEEEeCCC-----Ccccc------e-eeccc-cc
Q 013475 276 --------------PILDVEFTI---NGKQFVSSSDVSGSNMSENSIVVWDVSR-----EVPLS------K-QVYVE-AY 325 (442)
Q Consensus 276 --------------~i~~~~~~~---~~~~l~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~------~-~~~~~-~~ 325 (442)
.+..++.++ ++++|..... ..-++|.+.+ ..... . ..... ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l--------ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL--------SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET--------T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeC--------CCCcEEEEEHHHhhCccccccccccccceeccccCC
Confidence 133334333 3334433321 1122333221 11000 0 01111 23
Q ss_pred eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc-ccCcEEEEEcc--CCCEEEEe
Q 013475 326 TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV-SGFPIKCSFSL--DGEKLVSG 389 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~g~~l~~g 389 (442)
....+..+++|..+++--..+.|..|+..+......+..+..... -.++..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 567788899999999999999999999998665555454444333 45677888888 66655544
No 414
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.66 E-value=0.94 Score=46.18 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=101.9
Q ss_pred cCCCceeEEEeC---C----CCCEEEEEecCCcEEEEECC------CC---------cEEEeee----CCcceEEEEEcc
Q 013475 188 FHSAAVNDVKWS---Q----QGLFVLSCGYDCSSRLVDVE------KG---------IETQSFR----EELAVRVVKFHP 241 (442)
Q Consensus 188 ~h~~~v~~l~~~---~----~~~~l~s~~~d~~v~vwd~~------~~---------~~~~~~~----~~~~v~~~~~~~ 241 (442)
.-..+|..|+|. . ..++|++ -....+.|+... .. ..+..+. .......++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356889999998 2 1235554 445667777621 11 2333444 355778999999
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCc-----eEEEeccCC----------CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEE
Q 013475 242 ENSNLFLSGGSKGLLRLWDIRTGK-----VAHEYIQSL----------GPILDVEFTINGKQFVSSSDVSGSNMSENSIV 306 (442)
Q Consensus 242 ~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~ 306 (442)
.....|++....|...|||+.... ......... ..-..+.|..+.+.|+.+. ...+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--------r~~l~ 227 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--------RSKLM 227 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--------CCceE
Confidence 888899999999999999992111 111111111 2234788988888888888 58899
Q ss_pred EEeCCCCcccc-eeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 307 VWDVSREVPLS-KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 307 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
++|+++..... .........+..+.-++.....+.--....|..++...
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 99999876644 33333456788888888743222222447777777766
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.62 E-value=0.45 Score=41.97 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=76.4
Q ss_pred CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEe
Q 013475 230 EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWD 309 (442)
Q Consensus 230 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 309 (442)
....+..+..+++| .+++++.......-||--...-...-......|..|.|.+++...+.+. .|.|++=+
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~--------Gg~~~~s~ 213 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR--------GGQIQFSD 213 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET--------TTEEEEEE
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC--------CcEEEEcc
Confidence 45678888889986 7777766555556777543222222223457899999999988877664 78888877
Q ss_pred CC-CCcccce--e-eccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE
Q 013475 310 VS-REVPLSK--Q-VYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK 385 (442)
Q Consensus 310 ~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 385 (442)
.. ....... . .......+..+++.+++...++|+.+..++- .+.+....+.. ........+..+.|..+.+-
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S--~DgGktW~~~~--~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS--TDGGKTWQKDR--VGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE--SSTTSS-EE-G--GGTTSSS---EEEEEETTEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe--CCCCccceECc--cccCCCCceEEEEEcCCCce
Confidence 22 2221111 1 1123445788999999888887766644333 33332221111 11122345678888776555
Q ss_pred EEEecCCCcEEEE
Q 013475 386 LVSGSSDGSIYFY 398 (442)
Q Consensus 386 l~~g~~dg~i~iw 398 (442)
++.| .+|.|.-|
T Consensus 290 f~lG-~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLG-QDGVLLRY 301 (302)
T ss_dssp EEE--STTEEEEE
T ss_pred EEEC-CCcEEEEe
Confidence 5554 57766544
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.59 E-value=0.28 Score=42.36 Aligned_cols=150 Identities=13% Similarity=0.045 Sum_probs=90.7
Q ss_pred ceeEEEeCCCCCEEEEEe-cCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEE-CCCCceE-E
Q 013475 192 AVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWD-IRTGKVA-H 268 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~-~ 268 (442)
.+.+.+++++++.++... .++.-.+|-...+...........+..-.|.+++ .+.+....+...+++. ..+++.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeE
Confidence 788999999998887766 2333333333344333333344578888999995 6666666666666663 3333321 1
Q ss_pred Eecc--CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc--------ceeeccccceeeeEEecCCCCe
Q 013475 269 EYIQ--SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL--------SKQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 269 ~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 338 (442)
.... ..+.|..+.++|||..++...... .++.|.+--+.....- ..........+..+.|.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDG----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecC----CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 1211 112899999999999988766310 1567777655321111 1111223457889999999998
Q ss_pred eEEEeCCC
Q 013475 339 FVAQSNGN 346 (442)
Q Consensus 339 l~~~~~~~ 346 (442)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 88765544
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.54 E-value=0.96 Score=45.63 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=74.0
Q ss_pred CCEEEEEecCCcEEEEECCCCcEEEeeeCCcce---------EEEEEccC---------------CCCEEEEeeCCCcEE
Q 013475 202 GLFVLSCGYDCSSRLVDVEKGIETQSFREELAV---------RVVKFHPE---------------NSNLFLSGGSKGLLR 257 (442)
Q Consensus 202 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v---------~~~~~~~~---------------~~~~l~~~~~dg~i~ 257 (442)
+..|+.++.++.|.-.|..+|+.+.++..+..+ ..+.+... ....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777888999999999999999888743322 22333211 124778888999999
Q ss_pred EEECCCCceEEEeccCCCCEe-------------EEEEee--CCCEEEeccCC---CCCcCCCCeEEEEeCCCCccccee
Q 013475 258 LWDIRTGKVAHEYIQSLGPIL-------------DVEFTI--NGKQFVSSSDV---SGSNMSENSIVVWDVSREVPLSKQ 319 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~~---~~~~~~d~~i~iwd~~~~~~~~~~ 319 (442)
-.|.++|+.+..+... +.|. .+.-.| .+..+++++.. ......+|.|+-+|.++++.+-..
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988766321 1110 001111 13344444310 001112689999999999887665
Q ss_pred ec
Q 013475 320 VY 321 (442)
Q Consensus 320 ~~ 321 (442)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 43
No 418
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.46 E-value=0.73 Score=42.54 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=108.4
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEEEeeeCC---cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-CC
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFREE---LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-GP 276 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 276 (442)
++ .++.+..+|.|.-.|.++++.+...... ..+..-.+..+| .++.++.+|.++.+|.++++.+....... -.
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 44 4555577889999999999877655433 233333344454 37788888999999998999888776654 11
Q ss_pred EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc--cceeeeEEecCCCCeeEEEeC--CCeEEEee
Q 013475 277 ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE--AYTCPCVRHHPFDPYFVAQSN--GNYIAIFS 352 (442)
Q Consensus 277 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--~~~i~i~~ 352 (442)
+..-....++..++.. . ++.+...|..++.......... ...+..-.. .....+..+.. ++.+.-++
T Consensus 145 ~~~~~v~~~~~v~~~s-~-------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 145 YASPPVVGDGTVYVGT-D-------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred EecCcEEcCcEEEEec-C-------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEE
Confidence 2222223344333333 4 7888888888776654433322 111111111 22333444444 55677777
Q ss_pred CCCCcccccceeEeecccccC-----cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec
Q 013475 353 STPPFRLDKFKRYESHGVSGF-----PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA 411 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 411 (442)
...+...+..+.......... +..-...-+ .-++.++.+|.+...|..+++.+-++..
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 766655543221111111000 000000011 2235666677788888888888777765
No 419
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.44 E-value=0.21 Score=37.40 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=74.3
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccC------CcceeeeeccCCCceeEEEeCC-----CCCEEEEEecCCcEEEEE
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSR------DQKLARVLNFHSAAVNDVKWSQ-----QGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~d~~v~vwd 218 (442)
.-+|... ...|++++.-|+|.|++.... ....+..+. -...|++|+-.+ +...|+.|+ ...+..||
T Consensus 3 iGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3456655 557888888899999986433 223344454 567788876433 234566655 67799999
Q ss_pred CCCCcEEEeeeCCcceEEEEEccC---CCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 219 VEKGIETQSFREELAVRVVKFHPE---NSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
+++...+...+....|+++.+-.- ...++++|+ +..|.-||..-.+...+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 999877766666777888877322 134555554 56788787654444333
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.094 Score=50.49 Aligned_cols=197 Identities=10% Similarity=0.122 Sum_probs=105.3
Q ss_pred cCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCccee-eeeccCCCceeEEEeCCCCCE
Q 013475 126 SHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA-RVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~ 204 (442)
+..+.....++++..+.-..+.+-.+.|+.+ . -|++...||+++||++........ .-+......|..+.|..+|-.
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~-e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDD-E-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCC-c-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 3344556667777777666668999999988 4 466778899999999843311111 011223345666666666644
Q ss_pred EEEEecCCcEEEEECCCCcEEEeee--CCc--ceEEEEEccCCC--CEEEEee-CCCcEEEEECCCC-ceEEEeccCCCC
Q 013475 205 VLSCGYDCSSRLVDVEKGIETQSFR--EEL--AVRVVKFHPENS--NLFLSGG-SKGLLRLWDIRTG-KVAHEYIQSLGP 276 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~~~~~--~~~--~v~~~~~~~~~~--~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~ 276 (442)
+++. +|.+.+-+-.......++. ... ...|-...+++. ..++-.. ..+ ..++..... .....+....+.
T Consensus 142 vlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 142 VLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred EEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 4443 4555544322222222222 111 112222222211 1111111 011 112222221 122333333467
Q ss_pred EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC
Q 013475 277 ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 277 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
+..+..|++.++|+.-.. .|.|.+-++...+............-..++|.-
T Consensus 219 ~~ki~VS~n~~~laLyt~-------~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTE-------TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEEEEEcCCcceEEEEec-------CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 888999999999998887 999999988877766655544433333455543
No 421
>PHA03098 kelch-like protein; Provisional
Probab=96.28 E-value=0.35 Score=47.17 Aligned_cols=194 Identities=10% Similarity=0.062 Sum_probs=89.5
Q ss_pred CCCEEEEEecCC------cEEEEECCCCcEEEeeeC--CcceEEEEEccCCCCEEEEeeCC-----CcEEEEECCCCceE
Q 013475 201 QGLFVLSCGYDC------SSRLVDVEKGIETQSFRE--ELAVRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTGKVA 267 (442)
Q Consensus 201 ~~~~l~s~~~d~------~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 267 (442)
++..++.|+.++ .+..||..+++....-.. ...-.+++.. + +.+++.||.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-N-NRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-C-CEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556667776542 577888877655332211 1111122222 3 4777778765 34778888765422
Q ss_pred EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC--
Q 013475 268 HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-- 345 (442)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 345 (442)
..-.............-+++.++.|+.... ...-+.+..||..+.+-.............+ ...-++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKN-DELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCC-CcccceEEEEeCCCCeeeecCCCCccccCce-EEEECCEEEEECCccCC
Confidence 111101011111112336777777763110 0012568889987643221111111111111 222345566666532
Q ss_pred ------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC-----CcEEEEecCCc
Q 013475 346 ------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD-----GSIYFYNCRSS 403 (442)
Q Consensus 346 ------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~ 403 (442)
..+.+||..+..-.. +....... .....+. -++++++.|+.+ +.|.+||..+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTE-LSSLNFPR--INASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceee-CCCCCccc--ccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 237788877643221 11111000 1111222 267777777754 46788887764
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=96.28 E-value=0.4 Score=43.41 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=88.4
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEE-EEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICI-WNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
.+.++++.+.++ +.+++++. .|.+.. ++- +...-......-...++++.+.++++.++++ ..|.+++=..+.+.
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g~-~G~i~~s~~~--gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVSS-RGNFYSTWEP--GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCC-CeEEEEeC-CceEEEEcCC--CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 456889999998 77776655 455443 221 2111222223345688999999998876664 46766533345554
Q ss_pred EEEeee-----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec---cCCCCEeEEEEeeCCCEEEeccCC
Q 013475 224 ETQSFR-----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI---QSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 224 ~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
.-.... ....+..+.+.+++ .++ .++.+|.|.. ....++.-.... .-......+.|..+++.++++.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-- 321 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPG-EIW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-- 321 (334)
T ss_pred ccccccCCccccccceeeEEEcCCC-CEE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC--
Confidence 333222 12457888998874 544 4555675543 334443322221 2223577888887888877776
Q ss_pred CCCcCCCCeEEEEeC
Q 013475 296 SGSNMSENSIVVWDV 310 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~ 310 (442)
.|.|..|+-
T Consensus 322 ------~G~il~~~~ 330 (334)
T PRK13684 322 ------RGVLLRYVG 330 (334)
T ss_pred ------CceEEEecC
Confidence 688887764
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.20 E-value=0.12 Score=49.98 Aligned_cols=118 Identities=13% Similarity=0.232 Sum_probs=77.5
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--CCCEEEEEecCCcEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSRL 216 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~v~v 216 (442)
.++..-.....-+.-|.- ++..+.-+....+.|||......+....+. ..+.|.++.|.. +++.+++.|..+.|.+
T Consensus 23 ~~~~T~i~~~~li~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~-~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 23 STFETGISNPSLISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESFS-EDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEecCCCCcceEeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeeec-CCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334333445555555555 555555555568999999666444444453 578999999964 8999999999999999
Q ss_pred EECCC---------CcEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEEC
Q 013475 217 VDVEK---------GIETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261 (442)
Q Consensus 217 wd~~~---------~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 261 (442)
|.-.. ...++.+. ...+|.+..|..+| .+++.++ +.+.|+|-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECC
Confidence 86421 12334443 34689999999986 4444333 46888874
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=96.19 E-value=0.62 Score=44.66 Aligned_cols=142 Identities=8% Similarity=-0.058 Sum_probs=68.6
Q ss_pred CCEEEEecCCC-----cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC--CcEEEEECCCCcEEEeeeC
Q 013475 158 AHLLASAGMDQ-----SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD--CSSRLVDVEKGIETQSFRE 230 (442)
Q Consensus 158 ~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~ 230 (442)
+.+++.|+.++ .+..||..+.....+..+.........+. -++...+.|+.+ ..+..||..+++-...-.-
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 56667777543 46677875543333333321111122222 366677777753 4578888766543322221
Q ss_pred Ccce--EEEEEccCCCCEEEEeeCCC---cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 231 ELAV--RVVKFHPENSNLFLSGGSKG---LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 231 ~~~v--~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
.... .+++. -+ +.+.+.||.++ .+..||.++.+-...-......-......-+|+..+.|+ .+
T Consensus 350 ~~~r~~~~~~~-~~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG----------~~ 417 (480)
T PHA02790 350 LKPRCNPAVAS-IN-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR----------NA 417 (480)
T ss_pred CCCCcccEEEE-EC-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC----------ce
Confidence 1111 12222 23 37777777653 477888876543221110001001112234566666654 35
Q ss_pred EEEeCCCC
Q 013475 306 VVWDVSRE 313 (442)
Q Consensus 306 ~iwd~~~~ 313 (442)
.+||.++.
T Consensus 418 e~ydp~~~ 425 (480)
T PHA02790 418 EFYCESSN 425 (480)
T ss_pred EEecCCCC
Confidence 67887654
No 425
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.79 Score=39.35 Aligned_cols=194 Identities=15% Similarity=0.149 Sum_probs=111.9
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK 265 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (442)
-.+-+..+.++. ++...+..+.-++|.|+.+...-..+. ..+-..++..+ | ++..++..|.-+.+.|+.+.+
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence 345667777764 477777788889999998765444333 33445555554 4 777777766667888887543
Q ss_pred ---eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCCCeeEE
Q 013475 266 ---VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 266 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 341 (442)
....+......-..+..| |++-..+.. |+.+.+-|+.+......+.. .....+.++..+++..+++.
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-------d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-------DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEe-------CCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE
Confidence 334444444444566665 556555555 89999999988654433322 22225666666666555555
Q ss_pred EeCCCeEEEeeCCCCcccccceeEeecccccCcEEE-EEccCCCEEEEecCCCcEEEEecCC
Q 013475 342 QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC-SFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 342 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
. +.-+.+.|..+......+..++... +.++ .+.-.|++......+.-+.+-|+.+
T Consensus 231 y--~egvlivd~s~~ssp~~~gsyet~~----p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 231 Y--DEGVLIVDVSGPSSPTVFGSYETSN----PVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred c--ccceEEEecCCCCCceEeeccccCC----cccccceecccceeeeeccccCceeEeccC
Confidence 4 3345566666555443333332221 1111 2333455555555555556666543
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.05 E-value=0.57 Score=43.14 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=78.7
Q ss_pred CCEeEEEEeeCCCEEEeccCCC----CCcCCCC-eEEEEeCCCC--cccc-eeeccccceeeeEEecCCCCeeEEEeCCC
Q 013475 275 GPILDVEFTINGKQFVSSSDVS----GSNMSEN-SIVVWDVSRE--VPLS-KQVYVEAYTCPCVRHHPFDPYFVAQSNGN 346 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~----~~~~~d~-~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (442)
.....|+|.++|+++++..... ......+ .|.+++-.++ +... +...........+++.+++ ++++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456788888888877753100 0000023 6777765432 2211 1222223345778888888 44444444
Q ss_pred eEEEeeCCCCcccc-c----ceeEeecc--cccCcEEEEEccCCCEEEEecCC-------------------CcEEEEec
Q 013475 347 YIAIFSSTPPFRLD-K----FKRYESHG--VSGFPIKCSFSLDGEKLVSGSSD-------------------GSIYFYNC 400 (442)
Q Consensus 347 ~i~i~~~~~~~~~~-~----~~~~~~~~--~~~~v~~~~~s~~g~~l~~g~~d-------------------g~i~iwd~ 400 (442)
..++.+.+...... . +..+.... .......+.|.|||++.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 44444554322111 1 11111110 12335679999999876654421 44566665
Q ss_pred CCceeeEeeeccCCceeEEEEcCCCCCEEEEee
Q 013475 401 RSSELERKIKAYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
.+++. ..+...-.....++|++++ .++++-.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCC-CEEEEcc
Confidence 55443 2222223345789999998 6766543
No 427
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.12 Score=47.57 Aligned_cols=123 Identities=12% Similarity=0.159 Sum_probs=76.1
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-------eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-------YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
...++-.|+..++.+......... .+.+.|..+ .-++|-.+..|.-.|.+-........... .+.
T Consensus 489 ~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK-----dY~ 560 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK-----DYK 560 (776)
T ss_pred cccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-----hcc
Confidence 566777777777777666555443 455666432 23445556666666655433111111111 222
Q ss_pred EEEEEc----cCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 375 IKCSFS----LDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 375 ~~~~~s----~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
+.-.|| ....||++++..|.|++||.-.-+....+.+....|..+..+.+|..+|+||
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 222222 2345999999999999999765555566777788999999999996666666
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.03 E-value=0.3 Score=47.39 Aligned_cols=117 Identities=10% Similarity=0.102 Sum_probs=74.8
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEe--cCCCCeeEEEeCCCeEEEee
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRH--HPFDPYFVAQSNGNYIAIFS 352 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~i~i~~ 352 (442)
....-+.-+.-++.-++.+. ...+.|||.+.+.............|..+.| .|+++.+++.+-.+.|.+|.
T Consensus 30 ~~~~li~gss~~k~a~V~~~-------~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSS-------RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CCcceEeecccCcEEEEECC-------CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 34444555555555555554 7789999999887666655556667777776 56888999999999999886
Q ss_pred CCC------CcccccceeEeecccc-cCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 353 STP------PFRLDKFKRYESHGVS-GFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 353 ~~~------~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
-.. ......++......+. ..|.+..|.++|.+++..+ +.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 421 1111222222222222 3477889999997666544 45888874
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.00 E-value=0.0011 Score=59.86 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=95.1
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEE-EEecCCcEEEEECCCCcEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVL-SCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~ 225 (442)
.-....|-+.+++ ++.++.+..+..||- .++...... ..+....++|..++..++ .+-..+.+.+||+.+....
T Consensus 36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~---agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 36 GPIIHRWRPEGHN-LAVACANTIVIYYDK---AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccceeeEecCCCc-eehhhhhhHHHhhhh---hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 3345568888455 777777889999994 334443343 456677888988766544 4455789999999865321
Q ss_pred Eeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 226 QSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 226 ~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+++ ....-.-+.|++. ...++.+...|.+.|++..+.+.+-..-.|...+++++|.+.+..+....
T Consensus 111 -qLE~gg~~s~sll~wsKg-~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 111 -QLESGGTSSKSLLAWSKG-TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred -HHhccCcchHHHHhhccC-CccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 222 2222223678875 47778888899999999888776655555888999999998876555444
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.22 Score=48.17 Aligned_cols=196 Identities=11% Similarity=0.088 Sum_probs=100.7
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe----ccCCCCEeEEEEeeCC
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY----IQSLGPILDVEFTING 286 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~ 286 (442)
-.|+|+++. |+.+..+. ....+-.+.|+.+ ..|++...+|++++|++- |+.+... ......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 347777754 44444444 3448889999986 467778899999999985 3332221 2223457777777777
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-c-ccceeeeEEecCCCC--eeEEEeC-CCeEEEeeCCCCccccc
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-V-EAYTCPCVRHHPFDP--YFVAQSN-GNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~--~l~~~~~-~~~i~i~~~~~~~~~~~ 361 (442)
-.+++.+ +..+.+-+...... .+... + ......|....+.+. .++..-. .-...++-.....
T Consensus 140 Vavlt~~--------g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~---- 206 (829)
T KOG2280|consen 140 VAVLTVS--------GQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR---- 206 (829)
T ss_pred eEEEecC--------CcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc----
Confidence 7666665 33444444433221 11111 0 011112222222211 1111100 0000001000000
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-CCceeEEEEcCC
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-EQACIDVAFHPI 424 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~ 424 (442)
............+..+..|+++++|+-=...|.|.+-+.+..+.+..+... ...-..++|..+
T Consensus 207 ~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 207 VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 000000111244678999999999999999999999988877776666521 122225555544
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.93 E-value=1.4 Score=40.76 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=81.4
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEE-EeCCCCcc-cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVV-WDVSREVP-LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i-wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
..+..++++.+++.+. .|.+.. ||- +.. -..........+..+.+.+++..++++.. +.+..-+...
T Consensus 242 ~~v~~~~dG~~~~vg~--------~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G 310 (398)
T PLN00033 242 STVNRSPDGDYVAVSS--------RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTG 310 (398)
T ss_pred eeEEEcCCCCEEEEEC--------CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCC-ceEEEecCCC
Confidence 3445567777777776 354332 332 211 12233344556788889988888877644 4444332222
Q ss_pred C-cccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee---ccCCceeEEEEcCCCCCEEEE
Q 013475 356 P-FRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK---AYEQACIDVAFHPILPNIIGS 431 (442)
Q Consensus 356 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s 431 (442)
. .....+...........+..+.|..++..+++|. .|.+.... ..|+.-.... .-....+.+.|.+++ +.+++
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~g~~~ 387 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK-KGFVL 387 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC-ceEEE
Confidence 1 1000112111111123477888998887766654 67655553 4455433332 224568899998876 45555
Q ss_pred eeCCCcEEEc
Q 013475 432 CSWNGDVSVY 441 (442)
Q Consensus 432 ~~~dg~i~iw 441 (442)
| .+|.|.-|
T Consensus 388 G-~~G~il~~ 396 (398)
T PLN00033 388 G-NDGVLLRY 396 (398)
T ss_pred e-CCcEEEEe
Confidence 5 68887665
No 432
>PRK10115 protease 2; Provisional
Probab=95.91 E-value=2.2 Score=42.91 Aligned_cols=244 Identities=8% Similarity=0.020 Sum_probs=115.5
Q ss_pred cceEEEEeeCCCCCEEEEecC-CC----cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC------CcE
Q 013475 146 KAVNSINWSPTHAHLLASAGM-DQ----SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD------CSS 214 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------~~v 214 (442)
-.+..+.|+|| +++|+.+.. +| .|++-|+.++. .+...+.+ .. ..++|.+|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~-~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGN-WYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCC-CCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34777889999 777766532 23 57788885542 11222221 11 569999998877666542 368
Q ss_pred EEEECCCC--cEEEeeeC-CcceE-EEEEccCCCCEEEEee--CCCcEEEEECC--CCceEEEeccCCCCEeEEEEeeCC
Q 013475 215 RLVDVEKG--IETQSFRE-ELAVR-VVKFHPENSNLFLSGG--SKGLLRLWDIR--TGKVAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 215 ~vwd~~~~--~~~~~~~~-~~~v~-~~~~~~~~~~~l~~~~--~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~ 286 (442)
+.+++.++ +....+.. ..... ....+.++..+++... .++.+.+++.. ++.....+....+....+. + .+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H-YQ 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-CC
Confidence 88888887 33444442 22233 2233335533443332 23578888843 3332222222222222222 2 23
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC-ccccccee
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP-FRLDKFKR 364 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~~~~~~ 364 (442)
..|...+... .....|...++........+... ....+..+.+. .+..++....++.-+++-+... ... ..
T Consensus 280 ~~ly~~tn~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~---~~ 352 (686)
T PRK10115 280 HRFYLRSNRH---GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREV---IG 352 (686)
T ss_pred CEEEEEEcCC---CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCce---EE
Confidence 3333333210 01334555555432222233333 23466777776 3344555555665544443321 111 11
Q ss_pred EeecccccCcEEEEEc--cCCC-EEEEec---CCCcEEEEecCCce
Q 013475 365 YESHGVSGFPIKCSFS--LDGE-KLVSGS---SDGSIYFYNCRSSE 404 (442)
Q Consensus 365 ~~~~~~~~~v~~~~~s--~~g~-~l~~g~---~dg~i~iwd~~~~~ 404 (442)
+.. .....+..+.++ +++. ++++.+ .-+.++.+|+.+++
T Consensus 353 l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 353 IAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 110 111112223344 3333 444333 34678888887654
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.91 E-value=0.77 Score=37.69 Aligned_cols=139 Identities=11% Similarity=0.133 Sum_probs=84.8
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---C---cEEEE---ECC--CCcEE--
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---C---SSRLV---DVE--KGIET-- 225 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~---~v~vw---d~~--~~~~~-- 225 (442)
+.|+.+.....|.+|++..........+. .-+.|..+.++..|+||+|--.+ . .+|+| +.. ..+.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 44544455678999999866677777887 45899999999999999986442 2 56664 221 11111
Q ss_pred ---------------------EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EE-----Eec-----cC
Q 013475 226 ---------------------QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AH-----EYI-----QS 273 (442)
Q Consensus 226 ---------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~-----~~~-----~~ 273 (442)
.++.....+.+++..|..+++++.+ ++.+.+|.+..... .. .|. .+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1112345677888888765665543 45788998764322 11 111 11
Q ss_pred CC-CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeC
Q 013475 274 LG-PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDV 310 (442)
Q Consensus 274 ~~-~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~ 310 (442)
.+ ....+++. +.+++..+ +..++++.+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s--------~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS--------DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec--------CCEEEEEEE
Confidence 11 23444443 66888877 677777665
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.85 E-value=0.42 Score=46.87 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=89.5
Q ss_pred CCEEEEecCCCcEEEEEcccCCccee----eeec----------------cCCCceeEEEeCC--CCCEEEEEecCCcEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLA----RVLN----------------FHSAAVNDVKWSQ--QGLFVLSCGYDCSSR 215 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~----------------~h~~~v~~l~~~~--~~~~l~s~~~d~~v~ 215 (442)
.++|+.+. .+.|.||+...-..... ..+. .....|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 45666665 67999999853322110 0000 0123455555443 557889999999999
Q ss_pred EEECCC-------C-------------cEEEeeeCCcceEEEEEc--cCCCCEEEEeeCCCcEEEEECCCC--ceE-EEe
Q 013475 216 LVDVEK-------G-------------IETQSFREELAVRVVKFH--PENSNLFLSGGSKGLLRLWDIRTG--KVA-HEY 270 (442)
Q Consensus 216 vwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~--~~~-~~~ 270 (442)
+|.+++ . ++...+.....+++++++ .. .++||++++...|.||-+... +.. ..-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEEEecCCceEEEEEEeccccccccccc
Confidence 997632 0 122333456789999998 55 588888888888887755432 111 111
Q ss_pred ccCCCCEeEEEEeeCC-----C-EEEeccCCCCCcCCCCeEEEEeC
Q 013475 271 IQSLGPILDVEFTING-----K-QFVSSSDVSGSNMSENSIVVWDV 310 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~-----~-~l~~~~~~~~~~~~d~~i~iwd~ 310 (442)
..+...|-+|+|-++. . ++++++- .|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI-------~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDI-------SGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEec-------cCcEEEEEE
Confidence 1245678899997643 2 6666776 899999888
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.81 E-value=0.55 Score=35.21 Aligned_cols=111 Identities=7% Similarity=-0.003 Sum_probs=73.9
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEECCCC--------cEEEeeeCCcceEEEEEcc----CCCCEEEEeeCCCcEEEEECC
Q 013475 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKG--------IETQSFREELAVRVVKFHP----ENSNLFLSGGSKGLLRLWDIR 262 (442)
Q Consensus 195 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~iwd~~ 262 (442)
.-.|......|+.++.-|+|.|++.... ..+..+.....|++++--+ ++...|+.|+. ..|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 3456556667888888999999987633 3556666778888886544 23466777665 579999998
Q ss_pred CCceEEEeccCCCCEeEEEEee----CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc
Q 013475 263 TGKVAHEYIQSLGPILDVEFTI----NGKQFVSSSDVSGSNMSENSIVVWDVSREVP 315 (442)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 315 (442)
+...+.- +.-...|+++.+-. +..++++|+ +..|.-||....+.
T Consensus 82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG--------ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG--------NCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhhh-hhCccceeEEEEEecCCCCCcEEEECc--------eEEEEEeCCCCcEE
Confidence 7765432 23336677777643 345566666 67888887765543
No 436
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.77 E-value=1.2 Score=38.60 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=88.2
Q ss_pred cceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEe
Q 013475 232 LAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWD 309 (442)
Q Consensus 232 ~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 309 (442)
..+...++++++..+.++...++ .++++. .+....... ....+..-.|++++...+.... +....++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~-------~~~~~~~~ 93 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDG-------SGGVRVVR 93 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcC-------CCceEEEE
Confidence 36889999999855555552333 455554 333333322 2236788899999877766665 56666663
Q ss_pred -CCCCcccceee-ccccc-eeeeEEecCCCCeeEEEe---CCCeEEEeeCCCCccc--ccc--eeEeecccccCcEEEEE
Q 013475 310 -VSREVPLSKQV-YVEAY-TCPCVRHHPFDPYFVAQS---NGNYIAIFSSTPPFRL--DKF--KRYESHGVSGFPIKCSF 379 (442)
Q Consensus 310 -~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~~~~---~~~~i~i~~~~~~~~~--~~~--~~~~~~~~~~~v~~~~~ 379 (442)
...+....... ..... .|..+.++|||..++... .++.|.+--+.....- ..+ ...........++.+.|
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 33332222211 12122 799999999999888755 3567777644321111 000 00111122356789999
Q ss_pred ccCCCEEEEecCCCc
Q 013475 380 SLDGEKLVSGSSDGS 394 (442)
Q Consensus 380 s~~g~~l~~g~~dg~ 394 (442)
..++.+++.+...+.
T Consensus 174 ~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 174 SDDSTLVVLGRSAGG 188 (253)
T ss_pred cCCCEEEEEeCCCCC
Confidence 999998887765443
No 437
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.75 E-value=0.37 Score=40.88 Aligned_cols=153 Identities=10% Similarity=0.104 Sum_probs=85.3
Q ss_pred EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC---Cccccee--eccccceeeeE
Q 013475 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR---EVPLSKQ--VYVEAYTCPCV 330 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~--~~~~~~~~~~~ 330 (442)
-.+||+.+++....-........+-.+.+||+++.+|+...+ ...+++++... ....... ...........
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 457888877543222222233444567789999999987321 45688888654 1111111 12233455667
Q ss_pred EecCCCCeeEEEeCCCe-EEEeeCCCC-cccccceeEe---ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 331 RHHPFDPYFVAQSNGNY-IAIFSSTPP-FRLDKFKRYE---SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 331 ~~~~~~~~l~~~~~~~~-i~i~~~~~~-~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
..-++|+.|++|+.... ..+|..... .....+..+. .......--.+...|+|++|+.+..+. .|||..+.+.
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 77889999999877743 344443211 1111111111 011111122467789999999988764 5778888877
Q ss_pred eEeeeccCC
Q 013475 406 ERKIKAYEQ 414 (442)
Q Consensus 406 ~~~~~~~~~ 414 (442)
+..+..-.+
T Consensus 202 ~~~lP~lPg 210 (243)
T PF07250_consen 202 VRTLPDLPG 210 (243)
T ss_pred EeeCCCCCC
Confidence 776654333
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.15 Score=51.50 Aligned_cols=148 Identities=7% Similarity=-0.012 Sum_probs=87.8
Q ss_pred CcceEEEEEccCCCCEEEEe-eCCCcEEEEECCCCceE-----EEe------ccCCCCEeEEEEeeCCC-EEEeccCCCC
Q 013475 231 ELAVRVVKFHPENSNLFLSG-GSKGLLRLWDIRTGKVA-----HEY------IQSLGPILDVEFTINGK-QFVSSSDVSG 297 (442)
Q Consensus 231 ~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~-----~~~------~~~~~~i~~~~~~~~~~-~l~~~~~~~~ 297 (442)
.-.+..+...+|+....+.- +++-.|..||+++...- .-+ ........++.|+|.-- ..+.+..
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~--- 176 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS--- 176 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc---
Confidence 34455566666643333333 33346889999754211 111 11223456778887532 2333443
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEE
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
|+.|.+..+......... .......++++|+|.|+.+++|..+|++.-|.......... ..... .....|.++
T Consensus 177 ----dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~i-p~Pp~-~e~yrvl~v 249 (1405)
T KOG3630|consen 177 ----DLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEI-PEPPV-EENYRVLSV 249 (1405)
T ss_pred ----ccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecc-cCCCc-CCCcceeEE
Confidence 888888877653332222 33445789999999999999999999999998765422211 10000 113668899
Q ss_pred EEccCCCEEEE
Q 013475 378 SFSLDGEKLVS 388 (442)
Q Consensus 378 ~~s~~g~~l~~ 388 (442)
+|-....++++
T Consensus 250 ~Wl~t~eflvv 260 (1405)
T KOG3630|consen 250 TWLSTQEFLVV 260 (1405)
T ss_pred EEecceeEEEE
Confidence 99877777664
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.60 E-value=0.48 Score=47.26 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=26.6
Q ss_pred cCcEEEEEccC---CCEEEEecCCCcEEEEecCCc
Q 013475 372 GFPIKCSFSLD---GEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 372 ~~v~~~~~s~~---g~~l~~g~~dg~i~iwd~~~~ 403 (442)
..|..+.|+|. +.+|++=.+|+++++||+...
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 45778899985 588999999999999998753
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.54 E-value=0.054 Score=31.39 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=27.3
Q ss_pred cceEEEEeeCCCC--CEEEEecCCCcEEEEEccc
Q 013475 146 KAVNSINWSPTHA--HLLASAGMDQSICIWNVWS 177 (442)
Q Consensus 146 ~~V~~~~~s~~~~--~~l~s~~~dg~i~iwd~~~ 177 (442)
+.|.+++|||+++ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998756 7899888889999999853
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.43 E-value=0.13 Score=46.52 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCC----cee-EEEeCCCCCEEEEEe
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSA----AVN-DVKWSQQGLFVLSCG 209 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~l~s~~ 209 (442)
.+.+..+..--..|..+-..|| |+.|+.-+. ..+.|+++.+...+..+......+ .|+ .+..-..|..|+.+.
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 3445556666778889999999 887777654 689999986654433333322122 222 222234567788889
Q ss_pred cCCcEEEE-ECCCCc-----EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEE
Q 013475 210 YDCSSRLV-DVEKGI-----ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 210 ~d~~v~vw-d~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 282 (442)
.||-|.-| |+..+. .++.++ ....+..+.-..+ .+-|++-+.+|++.++.....+.+-. ..--..+.-+++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~ 365 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAM 365 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeee
Confidence 99999877 554331 223333 2234443333332 46678888889998887655443322 222235567899
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVP 315 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 315 (442)
||++.++++-. .|.++++.+++..+
T Consensus 366 Sp~~~~Ll~e~--------~gki~~~~l~Nr~P 390 (733)
T COG4590 366 SPNQAYLLSED--------QGKIRLAQLENRNP 390 (733)
T ss_pred Ccccchheeec--------CCceEEEEecCCCC
Confidence 99999998876 68999999987553
No 442
>PLN02153 epithiospecifier protein
Probab=95.41 E-value=2.1 Score=39.05 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCEEEEecCC-------CcEEEEEcccCCcceeeeecc-CCC---ceeEEEeCCCCCEEEEEecC-----CcEEEEECCC
Q 013475 158 AHLLASAGMD-------QSICIWNVWSRDQKLARVLNF-HSA---AVNDVKWSQQGLFVLSCGYD-----CSSRLVDVEK 221 (442)
Q Consensus 158 ~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~-h~~---~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~ 221 (442)
+++++.|+.+ ..+.+||+.+........... ... ....+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 5666667653 257788875543332222110 000 1122222 55677777653 3578889877
Q ss_pred CcEEEeeeC-----C-c-ceEEEEEccCCCCEEEEeeCC-----------CcEEEEECCCCc
Q 013475 222 GIETQSFRE-----E-L-AVRVVKFHPENSNLFLSGGSK-----------GLLRLWDIRTGK 265 (442)
Q Consensus 222 ~~~~~~~~~-----~-~-~v~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~ 265 (442)
.+-...-.. . . .-.+++.. + ..+++.|+.+ ..|.+||..+.+
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASD-E-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEE-C-CEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 643321110 1 1 11222222 3 3667777653 247788887654
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.36 E-value=3.5 Score=41.41 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=43.7
Q ss_pred CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----------Cc---eEEEe--------ccCCCCEeEEEEeeC---
Q 013475 230 EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----------GK---VAHEY--------IQSLGPILDVEFTIN--- 285 (442)
Q Consensus 230 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~---~~~~~--------~~~~~~i~~~~~~~~--- 285 (442)
..-.|..+.++++| .+++..|..| |.|..+.. ++ ..+++ ......|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 34578899999997 6666666554 44444421 11 11111 122346777888775
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
+..|+.-.. |+.+++||+..
T Consensus 161 ~~~l~vLts-------dn~lR~y~~~~ 180 (717)
T PF10168_consen 161 DSHLVVLTS-------DNTLRLYDISD 180 (717)
T ss_pred CCeEEEEec-------CCEEEEEecCC
Confidence 356665555 88888888854
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.33 E-value=0.011 Score=53.62 Aligned_cols=140 Identities=10% Similarity=0.091 Sum_probs=96.2
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (442)
......|.+.+.-++.++.+..+..||-. ++........+....++|.-++...++.+-..+.+.+||+.+..- .++.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 33455677877778888889999999944 445555556777788999988877888888899999999976421 1111
Q ss_pred -cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE
Q 013475 272 -QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 272 -~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (442)
+....-.-+.|++.+..++.+.. .+.+.|++..+...+.... .+..++.++++.+.+..+..
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~-------~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNN-------AGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred ccCcchHHHHhhccCCcccccccc-------ccceEEEeccchhhhhhhc-ccccceeEEEecccceeeec
Confidence 11111122678888888888877 9999999988765443322 24456778888876654443
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.16 E-value=0.37 Score=44.42 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=61.4
Q ss_pred eeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeC--CcceEEEEEccCCC-----------------C
Q 013475 185 VLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE--ELAVRVVKFHPENS-----------------N 245 (442)
Q Consensus 185 ~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~-----------------~ 245 (442)
.+......+.+|..+|++++.++...-|.|.++|+.++..++.++. +..+.-+.....+. .
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3444556788999999999888877779999999999988877762 22332222222111 2
Q ss_pred EEEEeeCCCcEEEEECCCCceEEEecc
Q 013475 246 LFLSGGSKGLLRLWDIRTGKVAHEYIQ 272 (442)
Q Consensus 246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~ 272 (442)
+++-.-.-|.|.||+++.+..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 344556788999999999887766653
No 446
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.00 E-value=1.2 Score=43.77 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=68.4
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCccc--------------ccce-eEeecccccCcEEEEEc--cCCCEEEEecCCCcEEE
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRL--------------DKFK-RYESHGVSGFPIKCSFS--LDGEKLVSGSSDGSIYF 397 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~~~s--~~g~~l~~g~~dg~i~i 397 (442)
....|+++..||.|.+|....-... ..++ .+.. .....++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3457888999999999965321100 0000 1111 223457888998 78889999998888888
Q ss_pred EecCCc--ee-eEeeeccCCceeEEEEcCCC--CC---EEEEeeCCCcEEEcC
Q 013475 398 YNCRSS--EL-ERKIKAYEQACIDVAFHPIL--PN---IIGSCSWNGDVSVYE 442 (442)
Q Consensus 398 wd~~~~--~~-~~~~~~~~~~v~~~~~~p~~--~~---~l~s~~~dg~i~iwd 442 (442)
|-+... +. ...-..|...|-+|+|-++. +. .|++++-.|.+.+|+
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 865432 11 11111256789999997754 22 778888899888764
No 447
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.98 E-value=2.5 Score=37.67 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=112.8
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEEECCCCcE------------
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEKGIE------------ 224 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~------------ 224 (442)
+++|+.|+.+|...+. +........+.+ +...|+++...+.-+.|++-+. ...++++++..-..
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 3689999988865554 532212344433 4678999999987777666552 33499999843221
Q ss_pred ----EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC----ceEEEe---c-cCCCCEeEEEEeeC--CCEEE
Q 013475 225 ----TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG----KVAHEY---I-QSLGPILDVEFTIN--GKQFV 290 (442)
Q Consensus 225 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~---~-~~~~~i~~~~~~~~--~~~l~ 290 (442)
...+.+................++++....+|.++..... .....+ . ....++..+..+.+ ...+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 1222233333333333222234455555667777654322 111110 0 11123333333332 45677
Q ss_pred eccCCCCCcCCCCeEEEEeCCC--Cccc----ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccccee
Q 013475 291 SSSDVSGSNMSENSIVVWDVSR--EVPL----SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKR 364 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 364 (442)
.|+. .+...++++.. .... ............++..-+++.++++ ..+ ...+.|..+.... .-..
T Consensus 170 vG~~-------~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc-~~~-~~v~Vn~~G~~~~-r~~~ 239 (302)
T smart00036 170 IGSD-------KGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLC-YDE-FGVFVNLYGKRRS-RNPI 239 (302)
T ss_pred EEEc-------CCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEE-ECc-EEEEEeCCCCccc-cceE
Confidence 7764 22444555432 1000 0000011102223333334444433 232 2333444431111 0011
Q ss_pred EeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec
Q 013475 365 YESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA 411 (442)
Q Consensus 365 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 411 (442)
+. -...+.++++. ..||+.-..++ |.|+++.+++.++++..
T Consensus 240 l~---w~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 240 LH---WEFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQELAD 280 (302)
T ss_pred EE---cCCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEEec
Confidence 11 12335566665 35777666554 99999999998888863
No 448
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.84 E-value=2 Score=35.75 Aligned_cols=135 Identities=9% Similarity=-0.007 Sum_probs=84.6
Q ss_pred CCceeEEEeCCCCCEEEEEec----------CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 190 SAAVNDVKWSQQGLFVLSCGY----------DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 190 ~~~v~~l~~~~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
....+.-..+|+|++++ |.. .|.++.|-... +....+..-.--+.++|+.+...+.++-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 34566667889999844 332 23444444322 1222222334456788988766666777778888778
Q ss_pred E--CCCCc-----eEEEecc----CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceee
Q 013475 260 D--IRTGK-----VAHEYIQ----SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCP 328 (442)
Q Consensus 260 d--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 328 (442)
| ..+|. .+..++. ..-.--.++...+|++++++-. .++|...|..+++.+.++.... ..++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-------g~~V~~~dp~tGK~L~eiklPt-~qit 257 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-------GGTVQKVDPTTGKILLEIKLPT-PQIT 257 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-------CcEEEEECCCCCcEEEEEEcCC-CceE
Confidence 7 55543 2333322 1112234556678888888887 8999999999999998887774 4677
Q ss_pred eEEecC
Q 013475 329 CVRHHP 334 (442)
Q Consensus 329 ~~~~~~ 334 (442)
+.+|--
T Consensus 258 sccFgG 263 (310)
T KOG4499|consen 258 SCCFGG 263 (310)
T ss_pred EEEecC
Confidence 777654
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.79 E-value=0.18 Score=29.31 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=27.1
Q ss_pred cceEEEEEccCCC--CEEEEeeCCCcEEEEECCC
Q 013475 232 LAVRVVKFHPENS--NLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 232 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 263 (442)
+.+.++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998754 6888888889999999995
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.78 E-value=0.032 Score=54.60 Aligned_cols=168 Identities=13% Similarity=0.172 Sum_probs=99.0
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce-----eeeeccCCCceeEEEeCC---CCCEEEEEec
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL-----ARVLNFHSAAVNDVKWSQ---QGLFVLSCGY 210 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~l~~~~---~~~~l~s~~~ 210 (442)
..++|..+.|-.+.|-..+...++ -.-|.+.||++.--++++ +.........+.-+.|.| +.-++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 456788899999999654222232 334788999985433322 222222334455566665 6667777777
Q ss_pred CCcEEEEECCCCcEEEeee-CCcceEEE-----------EEccCCCCEEEEeeCCCcEEEEECC-----CCceEEEeccC
Q 013475 211 DCSSRLVDVEKGIETQSFR-EELAVRVV-----------KFHPENSNLFLSGGSKGLLRLWDIR-----TGKVAHEYIQS 273 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~-~~~~v~~~-----------~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~ 273 (442)
++.|++.++++... ..+. |...+..+ ..+||| ..|+....||.+++|.+. ..++++.++.|
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 88998887765432 1111 44333332 268886 889999999988888653 23456677777
Q ss_pred CC-CEeEEEEeeCC---------CEEEeccCCCCCcCCCCeEEEEeCCCCccc
Q 013475 274 LG-PILDVEFTING---------KQFVSSSDVSGSNMSENSIVVWDVSREVPL 316 (442)
Q Consensus 274 ~~-~i~~~~~~~~~---------~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~ 316 (442)
.+ +-.|.-|..+. .+++++++ .+..+++|.....+++
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd------~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTD------VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEeccc------CCcceeEeeccchhhh
Confidence 63 33333343322 13344443 2677888877655544
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.71 E-value=0.18 Score=48.63 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=55.7
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
..-++++.-+|. ++-++.+..||+|++|++.......+... ..+-..+.|...| |+++..|..+.-|.- +|..
T Consensus 14 ~e~~~aiqshp~-~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnhg--l~~~tsdrr~la~~~-dgvv 86 (1636)
T KOG3616|consen 14 DEFTTAIQSHPG-GQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNHG--LVTATSDRRALAWKE-DGVV 86 (1636)
T ss_pred cceeeeeeecCC-CceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeeccc--eEEEeccchhheeec-cCcc
Confidence 345678888888 88999999999999999855433223222 2344456665544 666667887777763 3433
Q ss_pred EEeee----CCcceEEEEEccC
Q 013475 225 TQSFR----EELAVRVVKFHPE 242 (442)
Q Consensus 225 ~~~~~----~~~~v~~~~~~~~ 242 (442)
.+.|. ......++...|.
T Consensus 87 qqqfdyndqsekefss~~cdpt 108 (1636)
T KOG3616|consen 87 QQQFDYNDQSEKEFSSILCDPT 108 (1636)
T ss_pred hhhccccchhhhhccceecCch
Confidence 33333 2233444445554
No 452
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.66 E-value=3 Score=37.12 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCCEEEEEecCCcEEEEECCCC-cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKG-IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR 262 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (442)
++++|+.|.++| +.+.++... .....+-....|+++...+..+.+++.++....++++++.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 336899999888 556666542 2344444567899999998754445555555569999984
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=94.44 E-value=1.9 Score=41.40 Aligned_cols=145 Identities=10% Similarity=-0.006 Sum_probs=71.0
Q ss_pred CCEEEEecCC--CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeee--C
Q 013475 158 AHLLASAGMD--QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFR--E 230 (442)
Q Consensus 158 ~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~--~ 230 (442)
+++.+.|+.+ ..+..||..++.......+.........+. -+++..+.|+.+ ..+..||.++++-...-. .
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 6777777754 357788865443333333331111111222 267777777754 347788887764433211 1
Q ss_pred CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE--EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEE
Q 013475 231 ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA--HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVW 308 (442)
Q Consensus 231 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw 308 (442)
...-.+++ .-+ +.+.+.|+ .+.+||.++++-. ..+....... +++ .-+|+.++.|+... ...-..+..|
T Consensus 397 ~r~~~~~~-~~~-~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~--~~~~~~ve~Y 467 (480)
T PHA02790 397 PHYKSCAL-VFG-RRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYR--GSYIDTIEVY 467 (480)
T ss_pred ccccceEE-EEC-CEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCC--CcccceEEEE
Confidence 11111222 222 36666663 5778998766432 1121111122 222 33677888877510 0001456677
Q ss_pred eCCCC
Q 013475 309 DVSRE 313 (442)
Q Consensus 309 d~~~~ 313 (442)
|..+.
T Consensus 468 d~~~~ 472 (480)
T PHA02790 468 NNRTY 472 (480)
T ss_pred ECCCC
Confidence 76654
No 454
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.43 E-value=4.5 Score=38.08 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=39.8
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec-----cCCCceeEEEeCCCC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN-----FHSAAVNDVKWSQQG 202 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~ 202 (442)
+...-..-+.|+|.|| +++|++--..|.|++++-.+.....+..+. .-......|+|+|+-
T Consensus 25 va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3334456789999999 887776554699999975433222222221 135778999999873
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.43 E-value=3.8 Score=37.32 Aligned_cols=190 Identities=18% Similarity=0.247 Sum_probs=100.7
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEe----eCCCE--EEeccCCCCCcCCCCeEEEEeCCCCc-cc
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT----INGKQ--FVSSSDVSGSNMSENSIVVWDVSREV-PL 316 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~~~~~~~~~d~~i~iwd~~~~~-~~ 316 (442)
..+++...+++-+.+||+. |+.++.+.. +.++.+..- -+|+. |+.++... .....|++|.+.... .+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~---~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRS---DGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-C---CCT-EEEEEEEETTTTEE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCc---CCCCeEEEEEecCCCCcc
Confidence 4678888888999999995 666666642 445544432 23443 44444300 001579999876321 22
Q ss_pred ceeec------cccceeeeEEe--cC-CCC-eeEEEeCCCeEEEeeCCCCc----ccccceeEeecccccCcEEEEEccC
Q 013475 317 SKQVY------VEAYTCPCVRH--HP-FDP-YFVAQSNGNYIAIFSSTPPF----RLDKFKRYESHGVSGFPIKCSFSLD 382 (442)
Q Consensus 317 ~~~~~------~~~~~~~~~~~--~~-~~~-~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~ 382 (442)
..+.. .....+..+++ ++ ++. +.++...+|.+..|.+.... .-..++.+.. ...+-.|.....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe 218 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDE 218 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecc
Confidence 22111 11112334443 44 344 55667788988888775321 1122333332 345678888888
Q ss_pred CCEEEEecCCCcEEEEecCC-----ceeeEeeec--cCCceeEEEEc--CCCC-CEEEEeeCCCcEEEcC
Q 013475 383 GEKLVSGSSDGSIYFYNCRS-----SELERKIKA--YEQACIDVAFH--PILP-NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 383 g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~~--p~~~-~~l~s~~~dg~i~iwd 442 (442)
..+|+.+-++--|.-|+.+- ++.+....+ ....|-.|++- .++. .+|+|.=.+++..|||
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 88999999998787777652 233333322 34567777764 3332 4555555677788775
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.41 E-value=4.2 Score=37.69 Aligned_cols=144 Identities=15% Similarity=0.231 Sum_probs=82.7
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce-eeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc---
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL-ARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI--- 223 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~--- 223 (442)
...+..+++ +.+++.+..-..++-||- + ... ...-......+..+.|.+++..++++ .+|.+ +|....++
T Consensus 241 f~~v~~~~d-G~~~~vg~~G~~~~s~d~--G-~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPD-GDYVAVSSRGNFYLTWEP--G-QPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCC-CCEEEEECCccEEEecCC--C-CcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 444556677 776666654333333442 2 111 11112235678999999998877765 46654 44444543
Q ss_pred --EEEeeeC---CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 224 --ETQSFRE---ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 224 --~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
....... ...+..+.|.+++ .. +.++..|.+.... ..++.-... ..-......+.|..+++.++++.
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~-~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-- 389 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKK-EA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-- 389 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCC-cE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC--
Confidence 2222222 2358889998774 44 5556677666653 334332221 22235678999988888888887
Q ss_pred CCCcCCCCeEEEE
Q 013475 296 SGSNMSENSIVVW 308 (442)
Q Consensus 296 ~~~~~~d~~i~iw 308 (442)
+|.|.-|
T Consensus 390 ------~G~il~~ 396 (398)
T PLN00033 390 ------DGVLLRY 396 (398)
T ss_pred ------CcEEEEe
Confidence 6877655
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.38 E-value=0.29 Score=41.07 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=47.9
Q ss_pred EEccCCCEEEEecCCCcEEEEecCCceeeEee-------e-------ccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRSSELERKI-------K-------AYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+| .-|++-+ +|..+.||
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEec
Confidence 35567889999999999999999988754332 1 245678899999888 6777665 67788875
No 458
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.36 E-value=5.3 Score=38.67 Aligned_cols=241 Identities=9% Similarity=0.077 Sum_probs=114.2
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccC-CCceeEEEeCCCC-CEEEEEec--CCcEEEEECCCCcEEEeeeCCcc
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFH-SAAVNDVKWSQQG-LFVLSCGY--DCSSRLVDVEKGIETQSFREELA 233 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~ 233 (442)
+..++.+..+|.+....+...........-+. .....++.+..++ .+|+.|+. |+.+..|....-+.+..+..-++
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~P 301 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGP 301 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----S
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCC
Confidence 66788888999999888855432112222222 4556677776655 46777776 55666666556667777778889
Q ss_pred eEEEEEccC---CCC------EEEEee---CCCcEEEEECCCCceEE--E--eccCCCCEeEEEEeeC----CCEEEecc
Q 013475 234 VRVVKFHPE---NSN------LFLSGG---SKGLLRLWDIRTGKVAH--E--YIQSLGPILDVEFTIN----GKQFVSSS 293 (442)
Q Consensus 234 v~~~~~~~~---~~~------~l~~~~---~dg~i~iwd~~~~~~~~--~--~~~~~~~i~~~~~~~~----~~~l~~~~ 293 (442)
|..+++... +.. .|++++ .+|.+++.. .|-... . ...-.+ +..+=--+. +.+|+.+.
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEE
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEc
Confidence 999988532 222 445443 467888874 332222 1 111112 333322222 45666666
Q ss_pred CCCCCcCCCCeEEEEeCC---CCcccceeeccccceeeeEEecCCCCeeEEEe---------CCCeEEEeeCCCCccccc
Q 013475 294 DVSGSNMSENSIVVWDVS---REVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS---------NGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~i~i~~~~~~~~~~~ 361 (442)
...-+++.+. ....+..... . .|..+...++++. ..+.|++.+........
T Consensus 379 --------~~~T~vl~~~~~d~~e~~~e~~~-------~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~- 441 (504)
T PF10433_consen 379 --------PNETRVLQISEGDDGEEVEEVEE-------D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQ- 441 (504)
T ss_dssp --------SSEEEEEEES----SSEEEEE-----------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEE-
T ss_pred --------CCceEEEEEecccCCcchhhhhh-------c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEE-
Confidence 3455565554 1222211100 0 1222233333322 23446666654432221
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee-----ccCCceeEEEEcC
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK-----AYEQACIDVAFHP 423 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~p 423 (442)
... ......|...+. ++.+++.+..++.+..+.++......... .....|.|+...|
T Consensus 442 --~w~-~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 442 --EWK-PPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp --EEE--TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred --EEe-CCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 111 112233444443 44677777778889999887765543322 1467888888776
No 459
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=6.9 Score=39.88 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeee---------ccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVL---------NFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
|+.|..|+.||.+.+|.+........... ..+..+|..+...+.-.++++- .|+.|.++++.+-+.
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEP 100 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccc
Confidence 67899999999999999865422111111 1135677777766654455543 478898888877655
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=1 Score=41.14 Aligned_cols=133 Identities=13% Similarity=0.084 Sum_probs=84.6
Q ss_pred CCCEEEEEecCCcEEEEECCCC--cEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce----EEEecc
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKG--IETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV----AHEYIQ 272 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~ 272 (442)
|.+..+.|...|.+.-|-+... ...-.+. ..+.|.++.|++|+ +.+++--.+..|.+++....+. ..+.+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 3333333444555555554432 2222232 57799999999995 8999999999999999843322 122233
Q ss_pred CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe
Q 013475 273 SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
....|....|+.+ .-++... +..+-+|-....+...+....+...+....|.++...++.++
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~--------~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFIT--------DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred CcceeEEEEEecC-eeEEEEe--------cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 4456889999865 5555555 566777777665544455555666777888888877655544
No 461
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.17 E-value=5.5 Score=38.14 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=70.1
Q ss_pred CEEEEe---cCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcc--
Q 013475 159 HLLASA---GMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELA-- 233 (442)
Q Consensus 159 ~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-- 233 (442)
-++++. ...+...+.|. ++..+..+.........+...++|.+++... ..++.+|+. |+.+..+.....
T Consensus 116 l~~~~~~~~~~~~~~~~iD~---~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLIDN---NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEET---TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEECC---CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 345554 23445666663 2344444442222222266778888776554 778888885 666666663332
Q ss_pred --eEEEEEccCCCCEEEEeeC-------------CCcEEEEECCCCceEEEec--cCC----------------------
Q 013475 234 --VRVVKFHPENSNLFLSGGS-------------KGLLRLWDIRTGKVAHEYI--QSL---------------------- 274 (442)
Q Consensus 234 --v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~--~~~---------------------- 274 (442)
-..+...|+| ++|+.+.. ...|..+| .+|+.+..+. .|-
T Consensus 190 ~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 190 DFHHDIDELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp -B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred ccccccEECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 2567778886 66666551 12366666 6676665531 110
Q ss_pred ---CCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCccc
Q 013475 275 ---GPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPL 316 (442)
Q Consensus 275 ---~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~ 316 (442)
-.++++.+.+ ++.+++++-. -..|...|.++++..
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~-------~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRH-------QSAVIKIDYRTGKIK 306 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETT-------T-EEEEEE-TTS-EE
T ss_pred CCccccCccEEeCCCCeEEEEcCc-------ceEEEEEECCCCcEE
Confidence 1478899998 5555555544 557888887666544
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.03 E-value=2.9 Score=34.43 Aligned_cols=118 Identities=12% Similarity=0.209 Sum_probs=66.3
Q ss_pred ceEEEEEccCCCCEEEEeeCCCcEEEEECCC--CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEE--
Q 013475 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIRT--GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVW-- 308 (442)
Q Consensus 233 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iw-- 308 (442)
....++-... ..|+.+...+.|.+|++.. .+...+|..- +.|..+.++..|+++++--....... ...+++|
T Consensus 19 EP~~~c~~g~--d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~-~~fvR~Y~N 94 (215)
T PF14761_consen 19 EPTAVCCGGP--DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSP-VDFVRAYFN 94 (215)
T ss_pred CcceeeccCC--ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCcc-ceEEEEEEE
Confidence 3444444432 3444435567899999983 3455666544 78999999999999999765211110 1255654
Q ss_pred -eCCC--Ccc---------------------cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 309 -DVSR--EVP---------------------LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 309 -d~~~--~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
+... ..+ +..+..+-.....+++..|....|++|+ ++.+.+|.+..
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 2221 111 1112222234566777777666666664 45666666543
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.02 E-value=4.5 Score=36.51 Aligned_cols=108 Identities=9% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcEE---Eeee-CCcc--eEEEEEccCCCCEEEEeeCC-----CcEEEEECCCC
Q 013475 201 QGLFVLSCGYD-----CSSRLVDVEKGIET---QSFR-EELA--VRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTG 264 (442)
Q Consensus 201 ~~~~l~s~~~d-----~~v~vwd~~~~~~~---~~~~-~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 264 (442)
++.+++.|+.+ ..+..+|+.+.+.. ..+. .... -.+++.. + ..+++.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55666777654 35667777766531 2221 1111 1222232 2 3666777642 35888898765
Q ss_pred ceEE--EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 265 KVAH--EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 265 ~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
+-.. .+... ..........++++++.|+... ..-..+.+||..+.+
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~---~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSN---IAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCC---ccccceEEEecCCCe
Confidence 4321 11111 1122223344677777777510 001235688887654
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=2.2 Score=44.41 Aligned_cols=168 Identities=14% Similarity=0.217 Sum_probs=100.9
Q ss_pred cccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEe--------CCCC
Q 013475 131 SKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKW--------SQQG 202 (442)
Q Consensus 131 ~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~ 202 (442)
+++|..++..+. |...=+.+-+-|.=++.-+| .|+.+.+|+.+++ .....+.+-...|..+.. .+.=
T Consensus 65 ~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~--~e~~~~d~~shtIl~V~LvkPkpgvFv~~I 139 (1311)
T KOG1900|consen 65 VNIPDELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESD--NELAEYDGLSHTILKVGLVKPKPGVFVPEI 139 (1311)
T ss_pred ccCCHHHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCC--CccccccchhhhheeeeeecCCCCcchhhh
Confidence 577788887777 55555566666663444443 4789999999663 444455555566666653 2333
Q ss_pred CEEEEEecCCcEEEEECCCCc-------EE--Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEE--EECCCC---c-e
Q 013475 203 LFVLSCGYDCSSRLVDVEKGI-------ET--QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRL--WDIRTG---K-V 266 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~-------~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~---~-~ 266 (442)
++++..+.--.|.++-+.-.+ .. .++. ....|.|+....+| ++|++ |.||.|+- |....+ + +
T Consensus 140 qhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~-G~dg~lyEl~Yq~~~gWf~~rc 217 (1311)
T KOG1900|consen 140 QHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-RIFFA-GRDGNLYELVYQAEDGWFGSRC 217 (1311)
T ss_pred heeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCC-cEEEe-ecCCCEEEEEEeccCchhhccc
Confidence 444444445556666443211 11 1122 35678899866665 66555 45554432 222211 1 0
Q ss_pred ----------------EEEec-cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 267 ----------------AHEYI-QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 267 ----------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
+..+. .+..+|..+......+.+.+-+. .++|.+||+..
T Consensus 218 ~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lse-------k~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 218 RKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSE-------KGTVSAYDIGG 273 (1311)
T ss_pred ccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeecc-------CceEEEEEccC
Confidence 01122 45668999999888888888887 99999999987
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.82 E-value=0.73 Score=41.99 Aligned_cols=227 Identities=10% Similarity=0.022 Sum_probs=116.7
Q ss_pred CCCEEEEEecCCcEEEEECCCCc----EEEeeeCCcceEEEEEccCC-------CCEEEEeeCCCcEEEEECCC------
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGI----ETQSFREELAVRVVKFHPEN-------SNLFLSGGSKGLLRLWDIRT------ 263 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~------ 263 (442)
...+++.+..||.+.+....-.. .-..|... -.-++..+.| ..+.+....+....++|...
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g--~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~ 203 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPG--LEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILR 203 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCCCC--CCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhh
Confidence 45678888889999887643211 11122111 1111111111 12333444444444444321
Q ss_pred ------CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce-eecccc----ceee-eEE
Q 013475 264 ------GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK-QVYVEA----YTCP-CVR 331 (442)
Q Consensus 264 ------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~----~~~~-~~~ 331 (442)
++.+..+......|..+-..|||+.+..-+ ..++.++++.+.....+ ...... ..+. .+.
T Consensus 204 g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~--------g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~ 275 (733)
T COG4590 204 GDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRT--------GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLY 275 (733)
T ss_pred cccCchhhhhhhcCCCccchHhhEECCCCCEEEEec--------CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHH
Confidence 122333444556778888999999998887 57889998876432222 111111 1122 222
Q ss_pred ecCCCCeeEEEeCCCeEEEe-eCCCCcccccceeEeecccc-cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee
Q 013475 332 HHPFDPYFVAQSNGNYIAIF-SSTPPFRLDKFKRYESHGVS-GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI 409 (442)
Q Consensus 332 ~~~~~~~l~~~~~~~~i~i~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 409 (442)
.-..+..++++..||.|.-| |.+.... ..+...+..... ..+..+.-..+.+-+++-+.+|++.++.....+.+- +
T Consensus 276 lL~Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~ 353 (733)
T COG4590 276 LLSGGFSLLVVHEDGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-F 353 (733)
T ss_pred HHhCceeEEEEcCCCceeeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-h
Confidence 33456678888888888776 4443322 111111111111 112222222244567777888888887754433322 2
Q ss_pred eccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 410 KAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 410 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
..-...+..+++||.+ .+|++- +.|.++++
T Consensus 354 ~~~~~~~~~~~~Sp~~-~~Ll~e-~~gki~~~ 383 (733)
T COG4590 354 ERAYQAPQLVAMSPNQ-AYLLSE-DQGKIRLA 383 (733)
T ss_pred hhhhcCcceeeeCccc-chheee-cCCceEEE
Confidence 2223467778999998 576664 34566654
No 466
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.76 E-value=2.6 Score=39.29 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=87.6
Q ss_pred EEeeCCCCCEEEE-ecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC--------CEEEEEecCCcEEEEECCC
Q 013475 151 INWSPTHAHLLAS-AGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG--------LFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 151 ~~~s~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~d~~v~vwd~~~ 221 (442)
+..+.++..+|+. |+....++-.|+ ..++.+....-|..- -+.|.|+. +.|+ |-.+..|.-.|.+-
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDI--ErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~ 546 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDI--ERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRA 546 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeec--ccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccc
Confidence 3333332444443 444445555555 445777777756544 56677742 3344 44455565555542
Q ss_pred -CcEEEeeeC-----CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 222 -GIETQSFRE-----ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 222 -~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
|..+...+. .....+..-.. ..++++++..|-|++||--.-+-...+.+-...|..+..+.+|+++++.+
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-- 622 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-- 622 (776)
T ss_pred cCCceeeeeehhcccccccccccccc--CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--
Confidence 333333222 23333333333 35899999999999999533233334455567899999999999999888
Q ss_pred CCCcCCCCeEEEEeCCC
Q 013475 296 SGSNMSENSIVVWDVSR 312 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~ 312 (442)
...+.+-|++-
T Consensus 623 ------k~yllL~d~~i 633 (776)
T COG5167 623 ------KNYLLLTDVPI 633 (776)
T ss_pred ------cceEEEEeccc
Confidence 68888888754
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.70 E-value=0.57 Score=39.33 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=45.4
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcEEEee---------------eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 199 SQQGLFVLSCGYDCSSRLVDVEKGIETQSF---------------REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 199 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
..++++|++...+|.+++||+.+++.+..- .....|..+.++.+| .-+++- .+|..+.||..-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCCEEEecccc
Confidence 346788999999999999999998765433 233567778888765 444443 357788887654
Q ss_pred C
Q 013475 264 G 264 (442)
Q Consensus 264 ~ 264 (442)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 468
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=93.65 E-value=7.3 Score=37.74 Aligned_cols=228 Identities=11% Similarity=0.129 Sum_probs=104.3
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCc---EEEeeeC-CcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEecc
Q 013475 199 SQQGLFVLSCGYDCSSRLVDVEKGI---ETQSFRE-ELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYIQ 272 (442)
Q Consensus 199 ~~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~ 272 (442)
..++..++.+..+|.+....+.... .+..+.. ....+++.+..+|..+++.|+.-| .+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 4467788889999999988877644 2333333 455667777766434788887655 455555433445555543
Q ss_pred CCCCEeEEEEeeC---CC-------EEEeccCCCCCcCCCCeEEEEeCCCCcccc--eeeccc---cceeeeEEecC-CC
Q 013475 273 SLGPILDVEFTIN---GK-------QFVSSSDVSGSNMSENSIVVWDVSREVPLS--KQVYVE---AYTCPCVRHHP-FD 336 (442)
Q Consensus 273 ~~~~i~~~~~~~~---~~-------~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~---~~~~~~~~~~~-~~ 336 (442)
-++|.++++-.. +. .|++++. .+.+|.+++..- +-... ...... -..+..+.... ++
T Consensus 299 -~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG----~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~ 371 (504)
T PF10433_consen 299 -WGPIVDFCVVDSSNSGQPSNPSSDQLVACSG----AGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDH 371 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEES----SGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSB
T ss_pred -cCCccceEEeccccCCCCcccccceEEEEEC----cCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCc
Confidence 478999988532 11 4444432 113788888743 22222 111111 22333333322 24
Q ss_pred CeeEEEeCCCeEEEeeCC---CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-
Q 013475 337 PYFVAQSNGNYIAIFSST---PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY- 412 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~- 412 (442)
.++++...+. -.++.+. ....+..+. ..+......-..+..-. +.+++=.... .|++.+...++....+...
T Consensus 372 ~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~-~~~f~~~~~Tl~~~~~~-~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~ 447 (504)
T PF10433_consen 372 SYLVLSFPNE-TRVLQISEGDDGEEVEEVE-EDGFDTDEPTLAAGNVG-DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPA 447 (504)
T ss_dssp SEEEEEESSE-EEEEEES----SSEEEEE----TS-SSS-EEEEEEET-TTEEEEEESS-EEEEEESSSTSEEEEEE-TT
T ss_pred eEEEEEcCCc-eEEEEEecccCCcchhhhh-hccCCCCCCCeEEEEcC-CCeEEEEecC-eEEEEECCCCeEEEEEeCCC
Confidence 4555555443 3344442 121111110 00111111111111111 3444444433 3888887777766665432
Q ss_pred CCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 413 EQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 413 ~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
...|.+.+.+.. +++++. .++.+.+
T Consensus 448 ~~~I~~a~~~~~--~v~v~~-~~~~~~~ 472 (504)
T PF10433_consen 448 GSIIVAASINDP--QVLVAL-SGGELVY 472 (504)
T ss_dssp S---SEEEESSS--EEEEEE--TTEEEE
T ss_pred CCeEEEEEECCC--EEEEEE-eCCcEEE
Confidence 445666556543 344443 4555544
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.40 E-value=8.8 Score=40.37 Aligned_cols=283 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred ccccccceEEEEeeCCCCC---------EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC----CCCEEEE
Q 013475 141 LCHHTKAVNSINWSPTHAH---------LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ----QGLFVLS 207 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s 207 (442)
..||+..|.|.... |+ .-+..+-||++.| +....++.+.....-.+-+.... ..-+++.
T Consensus 343 gdG~qR~veC~~C~---G~a~~~~L~aPvala~a~DGSl~V-----GDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~Av 414 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCE---GKADSISLFAPVALAYAPDGSLIV-----GDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAV 414 (1899)
T ss_pred cCcccccccCCCCC---CccccceeeceeeEEEcCCCcEEE-----ccchheeeecCCCceEEEEEecCCCccceeEEEe
Q ss_pred EecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475 208 CGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
.--||++.|=|..+.+..+.-.... ....-+-+ +++|+.+.++-.=+. -|.-.......-..-..|+|+.+|.
T Consensus 415 sPvdgtlyvSdp~s~qv~rv~sl~~--~d~~~N~e----vvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~ 487 (1899)
T KOG4659|consen 415 SPVDGTLYVSDPLSKQVWRVSSLEP--QDSRNNYE----VVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGN 487 (1899)
T ss_pred cCcCceEEecCCCcceEEEeccCCc--cccccCee----EEeccCcCccccccc-cCcchhcccceeccCCceeEccCCc
Q ss_pred EEEeccCCCCCcCCCCeEEE--------EeCCCCcccceeeccccceeeeEEecCCCCeeEE--------EeCCCeEEEe
Q 013475 288 QFVSSSDVSGSNMSENSIVV--------WDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA--------QSNGNYIAIF 351 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~i--------wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~i~i~ 351 (442)
+.++-+..+.....+|.|.- |...+-.....+...+-...+.++.+|-.+.+.+ -+.++.|+|.
T Consensus 488 lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii 567 (1899)
T KOG4659|consen 488 LYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRII 567 (1899)
T ss_pred EEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEE
Q ss_pred eCCCCccc-----ccceeEeecccccCcEEEEEccCCCEEEEecC------------CCcEEEE---------------e
Q 013475 352 SSTPPFRL-----DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS------------DGSIYFY---------------N 399 (442)
Q Consensus 352 ~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------------dg~i~iw---------------d 399 (442)
.-+...+. ....++..|..-....+++++++|.+.++-+. ||.|.++ |
T Consensus 568 ~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cd 647 (1899)
T KOG4659|consen 568 LGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCD 647 (1899)
T ss_pred cCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCc
Q ss_pred cCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 400 CRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
.-+++-...-.+|-..+.+++.+|+| .+++.-..+-.|+
T Consensus 648 cfs~~~~~At~A~lnsp~alaVsPdg-~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 648 CFSLRDVAATQAKLNSPYALAVSPDG-DVIIADSGNSRIR 686 (1899)
T ss_pred cccccchhhhccccCCcceEEECCCC-cEEEecCCchhhh
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.39 E-value=5.8 Score=35.77 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCEEEEecCCC-----cEEEEEcccCCcc----eeeeeccCCCceeEEEeCCCCCEEEEEec-----CCcEEEEECCCCc
Q 013475 158 AHLLASAGMDQ-----SICIWNVWSRDQK----LARVLNFHSAAVNDVKWSQQGLFVLSCGY-----DCSSRLVDVEKGI 223 (442)
Q Consensus 158 ~~~l~s~~~dg-----~i~iwd~~~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~~~~ 223 (442)
+++++.|+.++ .+..+|+.+.... ....+...... .+++.. ++++.+.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56667776543 5666776554321 11111111111 122222 5566666664 2468888988765
Q ss_pred EEEee--eCCcceEEEEEccCCCCEEEEeeCCC----cEEEEECCCCc
Q 013475 224 ETQSF--REELAVRVVKFHPENSNLFLSGGSKG----LLRLWDIRTGK 265 (442)
Q Consensus 224 ~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~ 265 (442)
-...- .........+..-+ .++++.|+.++ .+..||+++.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCe
Confidence 33321 11112222222233 36777777654 35688887754
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=1.3 Score=45.96 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=81.3
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEE--------ecCCCCeeEEEeCCCeEEEeeCCCCcccccce----eEeecc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVR--------HHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFK----RYESHG 369 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~~ 369 (442)
|+.+.+|+++++.....+.... +.|..+. |.|.=+++++-.+--.|.++-+.-........ .+....
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~s-htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLS-HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred CCeEEEEEcCCCCccccccchh-hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 8999999999865444333222 2222222 33444566666666667766543322221111 122224
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecC--Cc---e-e----------------eEeee-ccCCceeEEEEcCCCC
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR--SS---E-L----------------ERKIK-AYEQACIDVAFHPILP 426 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~--~~---~-~----------------~~~~~-~~~~~v~~~~~~p~~~ 426 (442)
....|.++....+|+.+++|-.+ .|+=.-++ .+ + + +-.+. .+.++|..++.....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 45668888888899888877654 33322111 11 1 0 11122 456799999999887
Q ss_pred CEEEEeeCCCcEEEcC
Q 013475 427 NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 427 ~~l~s~~~dg~i~iwd 442 (442)
.++.+-+.-|+|.+||
T Consensus 255 ~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYD 270 (1311)
T ss_pred ceeeeeccCceEEEEE
Confidence 7999999999999996
No 472
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.27 E-value=6.4 Score=35.91 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=25.3
Q ss_pred CCEEEEeeCC-----------CcEEEEECCCCceEEEeccCCCCEeEE-EE-eeCCCEEEeccC
Q 013475 244 SNLFLSGGSK-----------GLLRLWDIRTGKVAHEYIQSLGPILDV-EF-TINGKQFVSSSD 294 (442)
Q Consensus 244 ~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~~~-~~-~~~~~~l~~~~~ 294 (442)
..+.+.|+.+ ..+..||..+.+-...-.......... .. .-+++.++.|+.
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGV 127 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCc
Confidence 3677777653 247778887654222111111111111 12 347778887775
No 473
>PLN02193 nitrile-specifier protein
Probab=92.98 E-value=8.9 Score=36.75 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcEEEeeeC---C--cceEEEEEccCCCCEEEEeeCCC-----cEEEEECCCCc
Q 013475 201 QGLFVLSCGYD-----CSSRLVDVEKGIETQSFRE---E--LAVRVVKFHPENSNLFLSGGSKG-----LLRLWDIRTGK 265 (442)
Q Consensus 201 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~---~--~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 265 (442)
++++.+.|+.+ +.+.+||+.+.+-...... . ..-.++... + ..+++.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~-~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-E-ENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-C-CEEEEECCCCCCCCcceEEEEECCCCE
Confidence 55666666654 4588889887644332111 1 111222222 2 36777777543 46778887654
Q ss_pred eEEEec-----cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 266 VAHEYI-----QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 266 ~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
-...-. ..... ..+. .-+++.++.++.. ...-..+.+||+.+.+
T Consensus 306 W~~~~~~~~~~~~R~~-~~~~-~~~gkiyviGG~~---g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 306 WFHCSTPGDSFSIRGG-AGLE-VVQGKVWVVYGFN---GCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEeCCCCCCCCCCCCC-cEEE-EECCcEEEEECCC---CCccCceEEEECCCCE
Confidence 321110 00111 1122 2366777766641 0112568999998754
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.95 E-value=7.6 Score=35.92 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCEEEEeeCC-----------CcEEEEECCCCceEEEeccCCCCEe-EEEEe-eCCCEEEeccC
Q 013475 244 SNLFLSGGSK-----------GLLRLWDIRTGKVAHEYIQSLGPIL-DVEFT-INGKQFVSSSD 294 (442)
Q Consensus 244 ~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~l~~~~~ 294 (442)
..+++.|+.+ ..+..||..+.+-...-........ ..... -+++.++.|+.
T Consensus 85 ~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCC
Confidence 3666777643 2477888876543221110011111 11222 46777777774
No 475
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.82 E-value=13 Score=38.22 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred cEEEEECCCCcEEEeeeCCc-----ceEEEEEccCCCC-EEEEee-----------CCCcEEEEECC-CCceEEEec--c
Q 013475 213 SSRLVDVEKGIETQSFREEL-----AVRVVKFHPENSN-LFLSGG-----------SKGLLRLWDIR-TGKVAHEYI--Q 272 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~-~l~~~~-----------~dg~i~iwd~~-~~~~~~~~~--~ 272 (442)
.|++.|..+++.+..+.+.. .+..+.|+..+.. ++++|. .+|.++.|++- +++.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 48889988888777776332 3566677665433 333332 23456677653 333222221 1
Q ss_pred CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-cceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 273 SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-AYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
-.+.| .+..|...+++++- ...+++||+...+.+.+..... ...|..+.+ .+..+++|.....+.++
T Consensus 934 ~~~~v--~Ai~~f~~~~Lagv--------G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQGRVLAGV--------GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCccc--eEEeccCCEEEEec--------ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEE
Confidence 22344 34456666777776 6899999999877766554443 334444443 45677777766665554
Q ss_pred eCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 352 SSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
..+.... .+..+.......+++.+.+ -|...++.+..-|.+.+..+
T Consensus 1002 ~y~~~~n--~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1002 RYRREDN--QLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEecCCC--eEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 4433211 1233333344444555444 35557777777777777654
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.73 E-value=5.8 Score=33.99 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=142.9
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
+.-+.|+-.+| |..-+++...+.|--.|-.++ +....--+....-..|..-||+..-++-+.. -|.-.|-++.+..
T Consensus 62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tG--ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATG--EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCC-CceEEecCccccceecCCCCC--ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 34567888899 888888888788777776444 4443334455666778888888766653322 4555565554332
Q ss_pred Eeee-----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC-CCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 226 QSFR-----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-LGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 226 ~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
.|. .........|.+.| ++.+++... .---.|... ..+..+... ...-..|+..|+|...++.-.
T Consensus 138 -~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G-~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasla----- 208 (353)
T COG4257 138 -RFPLPLEHADANLETAVFDPWG-NLWFTGQIG-AYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLA----- 208 (353)
T ss_pred -EeecccccCCCcccceeeCCCc-cEEEeeccc-cceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEecc-----
Confidence 222 35667888999986 787777531 111111111 122333222 124467888999998888776
Q ss_pred CCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCS 378 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 378 (442)
++.|-..|...+........ ........+..+|.+..-++....+.+..||..... ...+..........++.
T Consensus 209 --gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s----W~eypLPgs~arpys~r 282 (353)
T COG4257 209 --GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS----WIEYPLPGSKARPYSMR 282 (353)
T ss_pred --ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc----ceeeeCCCCCCCcceee
Confidence 78888888776532211111 113345566677888888887788888888876543 12333333333344566
Q ss_pred EccCCCEEEEecCCCcEEEEecCC
Q 013475 379 FSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 379 ~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
....|+.-.+--..|.|.-||-++
T Consensus 283 VD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 283 VDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eccCCcEEeeccccCceeecCccc
Confidence 666666655555556677777654
No 477
>PLN02153 epithiospecifier protein
Probab=92.68 E-value=7.7 Score=35.30 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCEEEEeeCC-----CcEEEEECCCCceE--EEecc---CCCCEeEEEEeeCCCEEEeccCCCCCc----CCCCeEEEEe
Q 013475 244 SNLFLSGGSK-----GLLRLWDIRTGKVA--HEYIQ---SLGPILDVEFTINGKQFVSSSDVSGSN----MSENSIVVWD 309 (442)
Q Consensus 244 ~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~~~----~~d~~i~iwd 309 (442)
..+++.|+.+ ..+.+||+.+.+-. ..+.. ...........-+++.++.|+...... ..-..+.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4677777753 25788998765432 11110 111111122234567777776411000 0013577888
Q ss_pred CCCCc
Q 013475 310 VSREV 314 (442)
Q Consensus 310 ~~~~~ 314 (442)
..+..
T Consensus 166 ~~~~~ 170 (341)
T PLN02153 166 IADGK 170 (341)
T ss_pred CCCCe
Confidence 87653
No 478
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.66 E-value=13 Score=37.94 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=49.1
Q ss_pred ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee----e-----------cc----CCceeEEEEcCCCCCEEEE
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI----K-----------AY----EQACIDVAFHPILPNIIGS 431 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~----~-----------~~----~~~v~~~~~~p~~~~~l~s 431 (442)
...|.++....-+.+++..-.||+|.++|-.+.+.+... . |. ...+..++|||++ ..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEEE
Confidence 355777777778889999999999999998876554433 1 00 1133458899998 68888
Q ss_pred eeCCCcEE
Q 013475 432 CSWNGDVS 439 (442)
Q Consensus 432 ~~~dg~i~ 439 (442)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888743
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=5 Score=32.82 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCCEEEEEec--CCcEEEEECCCCcEEEeeeCC-cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE
Q 013475 201 QGLFVLSCGY--DCSSRLVDVEKGIETQSFREE-LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI 277 (442)
Q Consensus 201 ~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 277 (442)
++.++.+.+. ...|++||+.+++.+..-.-. ..+..=-...-+..+..-.-.+|.-..+|.++.+.+..+.-. +.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-Ccc
Confidence 4566666665 457999999999887766532 222221112223344445567888899999887776665432 222
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL 316 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~ 316 (442)
..++ .|++.|+.+.. ..++..-|.++....
T Consensus 134 WgLt--~d~~~LimsdG-------satL~frdP~tfa~~ 163 (262)
T COG3823 134 WGLT--SDDKNLIMSDG-------SATLQFRDPKTFAEL 163 (262)
T ss_pred eeee--cCCcceEeeCC-------ceEEEecCHHHhhhc
Confidence 3333 35555666554 566777676654433
No 480
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.51 E-value=10 Score=36.19 Aligned_cols=270 Identities=9% Similarity=-0.014 Sum_probs=125.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc-CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
...|..+.+... |. |..|+.|| +..||. ...+....-.. ....|..+.-.-.+. |..|+.+| |++.+.+..+
T Consensus 164 d~~V~aLv~D~~-g~-lWvgT~dG-L~~fd~--~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 164 DTPVVALVFDAN-GR-LWVGTPDG-LSYFDA--GRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred Cccceeeeeecc-Cc-EEEecCCc-ceEEcc--ccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcc
Confidence 457888888887 54 55677776 455565 32333333222 225666666555554 66677666 8888776633
Q ss_pred EEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC--CCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 224 ETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS--LGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 224 ~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
...... ....|..+.-..+ ..+-.|+.+|..+.---+.+-.....+.| .+.|.++....+|..-+...
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~q--G~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~------ 308 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQ--GELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTY------ 308 (671)
T ss_pred ccccCCCCcchheeeeecccC--CCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeecc------
Confidence 222222 3444554444444 34566676665443322222111122222 24566676666776544433
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecC--CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC 377 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 377 (442)
++.+.+-+-. -.....+.......+......| .+..+-....-+.+.+-+-.++.........++ ..|+.+
T Consensus 309 --~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg----~nit~~ 381 (671)
T COG3292 309 --GGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG----MNITTT 381 (671)
T ss_pred --CceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc----cccchh
Confidence 4555443321 1111111111011111111111 111111122222233333333322222111111 235555
Q ss_pred EEccCCCEEEEecCCCcEEEEecCC-ceeeEeeec-cCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRS-SELERKIKA-YEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
++..+|+.- .|+...-+..|+.++ +..+....+ ..+.|..+.=.|++ + |..|+.+|.++
T Consensus 382 ~~d~~g~lW-lgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dn-s-LWIGTs~Glvk 442 (671)
T COG3292 382 LEDSRGRLW-LGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDN-S-LWIGTSGGLVK 442 (671)
T ss_pred hhccCCcEE-EEecccchhhhccCCcccccccccCCcccceeeeeecCCC-C-EEEeccCCeEe
Confidence 666655444 444443356666555 333333332 25678888888887 4 67777787665
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.41 E-value=0.87 Score=26.23 Aligned_cols=40 Identities=8% Similarity=-0.074 Sum_probs=29.1
Q ss_pred CCCCEEEEEe-cCCcEEEEECCCCcEEEeeeCCcceEEEEE
Q 013475 200 QQGLFVLSCG-YDCSSRLVDVEKGIETQSFREELAVRVVKF 239 (442)
Q Consensus 200 ~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~ 239 (442)
|++++|+++. .+++|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4667666655 478999999999988888875555555554
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.35 E-value=8.3 Score=34.85 Aligned_cols=147 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCe------EEEEeCCC--------Ccccceeeccccceee--------eEEe
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENS------IVVWDVSR--------EVPLSKQVYVEAYTCP--------CVRH 332 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~------i~iwd~~~--------~~~~~~~~~~~~~~~~--------~~~~ 332 (442)
+.+..|.+.+++..+++.++ ++. +..+++.. ...-............ ++++
T Consensus 20 GGlSgl~~~~~~~~~~avSD-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~ 92 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSD-------RGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV 92 (326)
T ss_pred CcEeeEEEeCCCCEEEEEEC-------CCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE
Q ss_pred cCCCCeeEEEeCC------CeEEEeeCCCCcccccc---eeE-------eecccccCcEEEEEccCCCEEEEecCCC---
Q 013475 333 HPFDPYFVAQSNG------NYIAIFSSTPPFRLDKF---KRY-------ESHGVSGFPIKCSFSLDGEKLVSGSSDG--- 393 (442)
Q Consensus 333 ~~~~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~-------~~~~~~~~v~~~~~s~~g~~l~~g~~dg--- 393 (442)
.+++.++++.-.+ ..|+.++.. +.....+ ..+ .....+...-.++++++|+.|++..+..
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Q ss_pred -------------cEEEEecC-----CceeeEeeec-----cCCceeEEEEcCCCCCEEE
Q 013475 394 -------------SIYFYNCR-----SSELERKIKA-----YEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 394 -------------~i~iwd~~-----~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~ 430 (442)
.|..||.. ..+....+.. ....|..+.+-+++ ++|+
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLv 230 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLV 230 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEE
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=9.9 Score=35.13 Aligned_cols=140 Identities=5% Similarity=-0.026 Sum_probs=85.1
Q ss_pred EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce-eeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 149 NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL-ARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
+.+-|... ++.|++ -..|.+.=|-+...+... ...-....++|.++.|++|.+.|++--.+++|.+++....+....
T Consensus 26 ngvFfDDa-Nkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDA-NKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccC-cceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 33444443 333332 234566667664333222 222223567999999999999999999999999999854433322
Q ss_pred ee-----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 228 FR-----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 228 ~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+. ....|....|..+ .-++.-...| +.+|..... +.++..+.+...|+-..|.++.+.++.++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22 2345888999876 3344444433 566654432 33455566777788888888877665554
No 484
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.00 E-value=10 Score=35.28 Aligned_cols=143 Identities=8% Similarity=-0.015 Sum_probs=84.9
Q ss_pred CCCEEEEEecCCcEEEEECCCCc-----EEEeeeCCcceEEEEEc---cC-CCCEEEEeeCCCcEEEEECCC--Cc----
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGI-----ETQSFREELAVRVVKFH---PE-NSNLFLSGGSKGLLRLWDIRT--GK---- 265 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~---~~-~~~~l~~~~~dg~i~iwd~~~--~~---- 265 (442)
+...|++|+..|.++||+...+. .+.+.+...+|..+..- +. +...|++ -.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986543 34444567777777653 21 1233333 4455677777631 11
Q ss_pred ---eEEEeccCC--CCEeEEEEee----C-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC
Q 013475 266 ---VAHEYIQSL--GPILDVEFTI----N-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF 335 (442)
Q Consensus 266 ---~~~~~~~~~--~~i~~~~~~~----~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (442)
.+..+..|. .....+++-+ . ..++.+-+. ||.+.+|+-+...- ........-...+.+.+.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~-------DG~L~~feqe~~~f--~~~lp~~llPgPl~Y~~~ 185 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSM-------DGSLSFFEQESFAF--SRFLPDFLLPGPLCYCPR 185 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEec-------CceEEEEeCCcEEE--EEEcCCCCCCcCeEEeec
Confidence 112222221 1223333333 2 355666666 99999999775331 111122223345788888
Q ss_pred CCeeEEEeCCCeEEEeeC
Q 013475 336 DPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 336 ~~~l~~~~~~~~i~i~~~ 353 (442)
...|++++.+..+..|..
T Consensus 186 tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCEEEEecCceeEEEecH
Confidence 889999999989888865
No 485
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.86 E-value=1.1 Score=43.77 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=44.0
Q ss_pred CCEEEEecCCCcEEEEEccc---CCcceeee-ecc--------------------CCCceeEEEeCC----CCCEEEEEe
Q 013475 158 AHLLASAGMDQSICIWNVWS---RDQKLARV-LNF--------------------HSAAVNDVKWSQ----QGLFVLSCG 209 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~---~~~~~~~~-~~~--------------------h~~~v~~l~~~~----~~~~l~s~~ 209 (442)
...|+.+..||.+....... ........ +.. ....+..++++. +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 55677778889888887643 11111111 110 123455666666 678999999
Q ss_pred cCCcEEEEECCCCcEEEeee
Q 013475 210 YDCSSRLVDVEKGIETQSFR 229 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~~ 229 (442)
.|+++|+||+.+++++....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEec
Confidence 99999999999999966553
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.67 E-value=15 Score=37.80 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=83.0
Q ss_pred CCcceeccccc---ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc---ceeeeeccCC----------CceeEEE
Q 013475 134 PGRLSTALCHH---TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ---KLARVLNFHS----------AAVNDVK 197 (442)
Q Consensus 134 ~~~~~~~l~~h---~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~h~----------~~v~~l~ 197 (442)
...++..+..+ .....+++|+|...+.||.....|.-.||++..... ........+. ..-..+.
T Consensus 131 ~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~ 210 (765)
T PF10214_consen 131 DPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRIL 210 (765)
T ss_pred ccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeE
Confidence 33444455432 246789999998778999999999999999921111 1111111111 2334788
Q ss_pred eCCCCCEEEEEecCCcEEEEECCCCcEEE---eeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC
Q 013475 198 WSQQGLFVLSCGYDCSSRLVDVEKGIETQ---SFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263 (442)
Q Consensus 198 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 263 (442)
|..+-+.|+.++ ...+.++|+++..... ..+....|..+.-++.+..+++.-. ...|...++..
T Consensus 211 W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 211 WVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ecCCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 988888888876 5669999999876533 3335677888888887444444433 24688888876
No 487
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.64 E-value=6.1 Score=34.60 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=65.2
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe------cCCcEEEEECCCCcEEEeee-----CCcceEE
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG------YDCSSRLVDVEKGIETQSFR-----EELAVRV 236 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~-----~~~~v~~ 236 (442)
..|++||..+. +-...-.+-.+.|+.|.|..+.++++.|. ....+..||..+..-...-. -.++|+.
T Consensus 16 ~~lC~yd~~~~--qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNS--QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCC--EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 46999998544 22222333568899999997776777664 24568889988775322222 2367888
Q ss_pred EEEccCC-CCEEEEee-CCC--cEEEEECCCCceEEE-eccCCCCEeEEEEee
Q 013475 237 VKFHPEN-SNLFLSGG-SKG--LLRLWDIRTGKVAHE-YIQSLGPILDVEFTI 284 (442)
Q Consensus 237 ~~~~~~~-~~~l~~~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~ 284 (442)
+.+...+ .++++.|. .+| .|..||=.+-..+.. .......|..+.+-+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 8875433 34554443 233 466665443333322 222234555555543
No 488
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=18 Score=38.23 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=25.7
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNV 175 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~ 175 (442)
......++|+|. .+++|.+..+|.|++|-.
T Consensus 35 ~~~~~~~afD~~-q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 35 PSTPSALAFDPT-QGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCCcceeeccc-cceEEEEEecccEEEecc
Confidence 345677899999 889999999999999975
No 489
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.86 E-value=11 Score=33.12 Aligned_cols=201 Identities=12% Similarity=0.173 Sum_probs=109.9
Q ss_pred ceEEEEEccCCCCEEEEeeCCCcEEEEECC------CC-ceEEEecc-----CCCCEeEEEEeeCCCE------------
Q 013475 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIR------TG-KVAHEYIQ-----SLGPILDVEFTINGKQ------------ 288 (442)
Q Consensus 233 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~~~~~~~~~~------------ 288 (442)
..+.|+++|.+ .+.++....+...+||.. .. ..+.++.. .....+.+.|+....+
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45789999985 777777778899999986 12 22333331 2235677777754333
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcc---cceeecc---ccceeeeEEecCC--CCee-EEEeCCCeEEEeeCCCCccc
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVP---LSKQVYV---EAYTCPCVRHHPF--DPYF-VAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~---~~~~~~~~~~~~~--~~~l-~~~~~~~~i~i~~~~~~~~~ 359 (442)
++.+++ ||+|.-|...-... ...+... ...-...+++... +.+| ++-...++|.+||..-....
T Consensus 103 Fif~tE-------dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 103 FLFVTE-------DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred EEEEeC-------CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 455555 99999998543222 1111111 1223344444432 3444 34456788888875432111
Q ss_pred cc-----------ceeE--eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec--cCCceeEEEEcCC
Q 013475 360 DK-----------FKRY--ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA--YEQACIDVAFHPI 424 (442)
Q Consensus 360 ~~-----------~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~ 424 (442)
.. +..+ ......-+|+-..-.++++.=+.|..-|.|-+||.. |++++++.. .-..-+.|+..|-
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChh
Confidence 00 0000 000111122222333334344455566899999975 788887742 2234566776542
Q ss_pred C-----CCEEEEeeCCCcEEEcC
Q 013475 425 L-----PNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 425 ~-----~~~l~s~~~dg~i~iwd 442 (442)
. +.+|+---.||+|.+||
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYD 277 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEec
Confidence 1 25677666799999887
No 490
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.85 E-value=11 Score=33.26 Aligned_cols=83 Identities=20% Similarity=0.098 Sum_probs=57.7
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC--------------------CCcEEEEE
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS--------------------KGLLRLWD 260 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--------------------dg~i~iwd 260 (442)
++++.++-+..|.|..+|.++|+........+....+.|. | .++++|-. ..-|.+.|
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G-~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid 288 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--G-DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID 288 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--C-CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence 5777777778899999999988877777777888899998 5 55555421 13467778
Q ss_pred CCCCceEEEec--cCCCCEeEEEEeeCC
Q 013475 261 IRTGKVAHEYI--QSLGPILDVEFTING 286 (442)
Q Consensus 261 ~~~~~~~~~~~--~~~~~i~~~~~~~~~ 286 (442)
+++|..+..++ +.-..+.+++.-|.-
T Consensus 289 l~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 289 LNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred CCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 88877665543 333456666666653
No 491
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.73 E-value=0.4 Score=47.47 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=49.0
Q ss_pred ceEEEEeeC---CCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEE-----------eCCCCCEEEEEecCC
Q 013475 147 AVNSINWSP---THAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVK-----------WSQQGLFVLSCGYDC 212 (442)
Q Consensus 147 ~V~~~~~s~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~l~s~~~d~ 212 (442)
.+.-|.|.| + .-++..+-.++.|++.+++.. ....+.+|...+..++ .+|||+.|+.++.||
T Consensus 182 ~~~~V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra---~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVN-KVYICYGLKGGEIRLLNINRA---LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred Ccceeeecccccc-cceeeeccCCCceeEeeechH---HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 344455554 4 567778888899998887433 2245556777666554 478999999999999
Q ss_pred cEEEEECC
Q 013475 213 SSRLVDVE 220 (442)
Q Consensus 213 ~v~vwd~~ 220 (442)
.++.|.+.
T Consensus 258 ~v~f~Qiy 265 (1283)
T KOG1916|consen 258 SVGFYQIY 265 (1283)
T ss_pred ccceeeee
Confidence 88888653
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.28 E-value=1.4 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=24.6
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCCceEEEeccC
Q 013475 241 PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS 273 (442)
Q Consensus 241 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 273 (442)
|++..++++...++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 455456666667889999999988887777654
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.90 E-value=10 Score=35.77 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=24.8
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
..+..+...+..+.|++-+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3388889988889999999999999999974
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.90 E-value=15 Score=33.45 Aligned_cols=25 Identities=16% Similarity=0.031 Sum_probs=15.9
Q ss_pred CCCEEEEEecC-----------CcEEEEECCCCcEE
Q 013475 201 QGLFVLSCGYD-----------CSSRLVDVEKGIET 225 (442)
Q Consensus 201 ~~~~l~s~~~d-----------~~v~vwd~~~~~~~ 225 (442)
++++.+.|+.+ ..+..||..+.+-.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 56677777653 24777888776433
No 495
>PLN02193 nitrile-specifier protein
Probab=89.66 E-value=20 Score=34.42 Aligned_cols=197 Identities=8% Similarity=-0.024 Sum_probs=88.5
Q ss_pred CCCEEEEEecC-------CcEEEEECCCCcEEEeeeC---Cc--ce-EEEEEccCCCCEEEEeeCC-----CcEEEEECC
Q 013475 201 QGLFVLSCGYD-------CSSRLVDVEKGIETQSFRE---EL--AV-RVVKFHPENSNLFLSGGSK-----GLLRLWDIR 262 (442)
Q Consensus 201 ~~~~l~s~~~d-------~~v~vwd~~~~~~~~~~~~---~~--~v-~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 262 (442)
++.+++.|+.+ ..+.+||+.+.+-...-.. .. .. .+++.. +..+++.|+.+ ..+..||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34555666642 3477888877643321111 01 01 112222 24677777754 358889988
Q ss_pred CCceEEEecc---CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec--cccce-eeeEEecCCC
Q 013475 263 TGKVAHEYIQ---SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY--VEAYT-CPCVRHHPFD 336 (442)
Q Consensus 263 ~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~-~~~~~~~~~~ 336 (442)
+.+-...-.. ....-......-++++++.++... ......+..||+.+.+-...... ..... ...+.. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA--TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC--CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECC
Confidence 7643221111 111111112223566667666410 01124577888876432111000 00001 111222 246
Q ss_pred CeeEEEeCC----CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC--------------CcEEEE
Q 013475 337 PYFVAQSNG----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD--------------GSIYFY 398 (442)
Q Consensus 337 ~~l~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--------------g~i~iw 398 (442)
+.++.++.+ +.+.+||..+..-.. +... +..........+..-++++++.|+.+ +.+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~-~~~~-g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQ-VETF-GVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEE-eccC-CCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 666666544 568888887643211 1110 00000011111223366777777753 247888
Q ss_pred ecCCce
Q 013475 399 NCRSSE 404 (442)
Q Consensus 399 d~~~~~ 404 (442)
|..+.+
T Consensus 408 D~~t~~ 413 (470)
T PLN02193 408 DTETLQ 413 (470)
T ss_pred EcCcCE
Confidence 887654
No 496
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.52 E-value=9.8 Score=35.82 Aligned_cols=125 Identities=22% Similarity=0.124 Sum_probs=0.0
Q ss_pred CEEEEEecCCcEEEEECCCCcEEEee-----------------------eCCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 203 LFVLSCGYDCSSRLVDVEKGIETQSF-----------------------REELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
+.++.+-.| .+..||-+.......- ...-.|..+..++.| ..++-.|.+|.+..+
T Consensus 53 rN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~G-S~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 53 RNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTG-SHVALIGIKGLMVME 130 (741)
T ss_pred cchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCC-ceEEEecCCeeEEEE
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC---
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD--- 336 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 336 (442)
=.+....-..+......|+|=.+.-+.+++.+.+. ..+..++|+|+.
T Consensus 131 Lp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~------------------------------ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 131 LPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS------------------------------LTLKQAAWHPSSILD 180 (741)
T ss_pred chhhcCccceecCCCceEEEEeecccceeeccCCc------------------------------eeeeeccccCCccCC
Q ss_pred CeeEEEeCCCeEEEeeCCCCccc
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
..++.-+.|+.|++|+......+
T Consensus 181 ~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchh
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.32 E-value=3.3 Score=33.36 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
.+++||.||+..+.+ +..|.|.+.............................+-.... ...-|-.....
T Consensus 8 ~~l~WS~Dg~laV~t---------~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~ 76 (173)
T PF12657_consen 8 NALAWSEDGQLAVAT---------GESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLF--TSSEWPTESPR 76 (173)
T ss_pred cCeeECCCCCEEEEc---------CCeEEEEeccCCcccccccccCCcccccccCCCccceEecCcc--ccccCceeccc
Q ss_pred ccccceeEeecccccCcEEEEEccCC------CEEEEecCCCcEEEE
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDG------EKLVSGSSDGSIYFY 398 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~g~~dg~i~iw 398 (442)
.... .......+..++|||.| -+|++-+.+|.|.||
T Consensus 77 ~~~~-----~~~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 77 SMDD-----EEISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred cccc-----cccccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
No 498
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.29 E-value=14 Score=32.91 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred eeCCCcEEEEECCCCceEEEeccCC------------CCEeEEEEeeCCCEEE------------eccCCCCCcCCCCeE
Q 013475 250 GGSKGLLRLWDIRTGKVAHEYIQSL------------GPILDVEFTINGKQFV------------SSSDVSGSNMSENSI 305 (442)
Q Consensus 250 ~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~------------~~~~~~~~~~~d~~i 305 (442)
|-..|.+.+.| .+.+.+.++.... .....+.+.++|..|+ .++. ...-..|+.+
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~-~~g~i~d~~~ 98 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGP-EDGWILDDVF 98 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcC-CCccEeccee
Q ss_pred EEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE
Q 013475 306 VVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK 385 (442)
Q Consensus 306 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 385 (442)
.-.|+.+++.+.+................ .-..+.....-..||. -.+.++....+|.|
T Consensus 99 ~EiDi~TgevlfeW~a~DH~~~~~~~~~~---~~~~~~g~~~~~~~D~------------------~HiNsV~~~~~G~y 157 (299)
T PF14269_consen 99 QEIDIETGEVLFEWSASDHVDPNDSYDSQ---DPLPGSGGSSSFPWDY------------------FHINSVDKDDDGDY 157 (299)
T ss_pred EEeccCCCCEEEEEEhhheeccccccccc---ccccCCCcCCCCCCCc------------------cEeeeeeecCCccE
Q ss_pred EEEecCCCcEEEEecCCceeeEeeeccCCceeE-----EEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 386 LVSGSSDGSIYFYNCRSSELERKIKAYEQACID-----VAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 386 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|++.-.-..|.+.|-.+|+.+-.+.+....=.. ++|..+- +++-.+..++.|.|+|
T Consensus 158 LiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHda-r~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 158 LISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDA-RFLNESNDDGTISLFD 218 (299)
T ss_pred EEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCC-EEeccCCCCCEEEEEc
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.20 E-value=1.7 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred eEeeeccCCceeEEEEcCCCCCEEEEeeCC--CcEEEc
Q 013475 406 ERKIKAYEQACIDVAFHPILPNIIGSCSWN--GDVSVY 441 (442)
Q Consensus 406 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iw 441 (442)
+..+......-....|+|||..++.++..+ |...||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.17 E-value=24 Score=34.81 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred ccceEEEEeeCCCC---CEEEEecCCCcEEEEEcccC----------CcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 145 TKAVNSINWSPTHA---HLLASAGMDQSICIWNVWSR----------DQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 145 ~~~V~~~~~s~~~~---~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
+..|.||....... .|++.-...+..++-.+..+ .......--.-.+.|..+.|..+++.+++.-.+
T Consensus 71 t~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~n 150 (670)
T PF10395_consen 71 TTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLEN 150 (670)
T ss_pred CceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcC
Q ss_pred CcEEEEEC--CCCcEEEeee--CCcceEEEEEccCCC-----CEEEEeeC-CCc---EEEEEC-CCCceEEEec---cCC
Q 013475 212 CSSRLVDV--EKGIETQSFR--EELAVRVVKFHPENS-----NLFLSGGS-KGL---LRLWDI-RTGKVAHEYI---QSL 274 (442)
Q Consensus 212 ~~v~vwd~--~~~~~~~~~~--~~~~v~~~~~~~~~~-----~~l~~~~~-dg~---i~iwd~-~~~~~~~~~~---~~~ 274 (442)
|.|.+||. ...+.+..++ +...+.--+|.++.. .++++-+. ++. .+++.+ .....+.++. .+.
T Consensus 151 G~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~ 230 (670)
T PF10395_consen 151 GSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILEN 230 (670)
T ss_pred CcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheecc
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccccee---eeEEecCCCCeeEEEeCCCeEEEe
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTC---PCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
.......|.-+...|.--. +++|.+|++..-+....+....-..- ..+.+.+-..--+.-+.++.|++.
T Consensus 231 ~~~~~s~f~Y~~G~LY~l~--------~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLl 302 (670)
T PF10395_consen 231 FGLEDSKFCYQFGKLYQLS--------KKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLL 302 (670)
T ss_pred CCcccceEEEeCCEEEEEe--------CCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEE
Q ss_pred eC
Q 013475 352 SS 353 (442)
Q Consensus 352 ~~ 353 (442)
|+
T Consensus 303 d~ 304 (670)
T PF10395_consen 303 DL 304 (670)
T ss_pred ee
Done!