Query 013475
Match_columns 442
No_of_seqs 895 out of 2362
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 11:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.6E-49 5.4E-54 357.4 38.8 294 134-442 21-318 (321)
2 1vyh_C Platelet-activating fac 100.0 2.5E-49 8.4E-54 368.7 39.9 289 136-442 99-408 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 2E-48 6.8E-53 353.7 42.3 292 134-442 44-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 1.3E-47 4.5E-52 342.6 39.1 289 135-439 3-297 (304)
5 2pbi_B Guanine nucleotide-bind 100.0 3.2E-47 1.1E-51 347.3 41.5 294 133-442 52-354 (354)
6 4ery_A WD repeat-containing pr 100.0 6E-47 2E-51 340.1 41.9 293 135-442 13-309 (312)
7 3iz6_a 40S ribosomal protein R 100.0 5.5E-48 1.9E-52 356.2 31.6 298 134-442 55-372 (380)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.3E-47 3.2E-51 343.3 36.9 298 135-442 5-332 (345)
9 4gqb_B Methylosome protein 50; 100.0 1E-46 3.5E-51 341.5 35.5 283 143-442 28-328 (344)
10 3frx_A Guanine nucleotide-bind 100.0 1.9E-45 6.4E-50 330.9 40.7 290 135-442 7-314 (319)
11 4g56_B MGC81050 protein; prote 100.0 1.6E-45 5.4E-50 336.4 34.1 285 142-442 39-340 (357)
12 1nr0_A Actin interacting prote 100.0 6.9E-45 2.4E-49 356.0 39.8 293 135-442 137-564 (611)
13 2xzm_R RACK1; ribosome, transl 100.0 2.4E-44 8.1E-49 327.3 39.7 290 134-442 10-337 (343)
14 2hes_X YDR267CP; beta-propelle 100.0 2.6E-44 8.8E-49 325.1 37.7 294 135-442 4-325 (330)
15 1erj_A Transcriptional repress 100.0 4E-44 1.4E-48 331.9 39.3 286 143-442 62-386 (393)
16 1nr0_A Actin interacting prote 100.0 2.7E-44 9.2E-49 351.8 38.4 296 135-442 49-394 (611)
17 3zwl_B Eukaryotic translation 100.0 1E-42 3.5E-47 319.7 39.9 289 136-442 23-343 (369)
18 2ymu_A WD-40 repeat protein; u 100.0 1E-42 3.6E-47 339.3 41.3 292 127-442 285-577 (577)
19 4aow_A Guanine nucleotide-bind 100.0 5.1E-42 1.8E-46 311.7 41.0 290 136-442 29-334 (340)
20 3gre_A Serine/threonine-protei 100.0 3.1E-43 1.1E-47 331.1 32.7 300 131-442 48-437 (437)
21 3ei3_B DNA damage-binding prot 100.0 2.2E-42 7.7E-47 319.5 36.8 290 134-442 62-379 (383)
22 3i2n_A WD repeat-containing pr 100.0 1.5E-42 5.3E-47 317.2 33.1 297 134-442 7-350 (357)
23 1gxr_A ESG1, transducin-like e 100.0 2.8E-41 9.5E-46 306.3 40.8 282 141-442 47-334 (337)
24 3dm0_A Maltose-binding peripla 100.0 7.6E-42 2.6E-46 339.8 40.1 290 136-442 373-690 (694)
25 2ynn_A Coatomer subunit beta'; 100.0 6.4E-42 2.2E-46 305.8 35.1 249 181-442 4-256 (304)
26 4e54_B DNA damage-binding prot 100.0 1.2E-42 4.1E-47 326.5 31.5 296 136-442 110-427 (435)
27 2ymu_A WD-40 repeat protein; u 100.0 3.4E-41 1.2E-45 328.6 42.0 294 126-442 243-536 (577)
28 1sq9_A Antiviral protein SKI8; 100.0 4.6E-42 1.6E-46 318.9 32.8 292 136-442 7-392 (397)
29 3k26_A Polycomb protein EED; W 100.0 1.2E-41 3.9E-46 312.5 33.3 289 140-442 13-363 (366)
30 1k8k_C P40, ARP2/3 complex 41 100.0 3.2E-41 1.1E-45 310.3 34.8 286 141-442 4-358 (372)
31 4a11_B DNA excision repair pro 100.0 1.7E-40 5.7E-45 309.4 38.8 299 135-442 33-362 (408)
32 3odt_A Protein DOA1; ubiquitin 100.0 3E-40 1E-44 296.4 37.4 282 134-442 7-293 (313)
33 2pm9_A Protein WEB1, protein t 100.0 1.4E-41 4.6E-46 317.7 29.5 286 143-442 65-411 (416)
34 3mmy_A MRNA export factor; mRN 100.0 2.1E-40 7.1E-45 304.3 35.2 297 133-441 27-342 (368)
35 3dwl_C Actin-related protein 2 100.0 4.9E-42 1.7E-46 316.5 24.2 288 141-442 7-376 (377)
36 1vyh_C Platelet-activating fac 100.0 1.2E-40 4.1E-45 310.1 33.2 251 134-401 139-410 (410)
37 2pm9_A Protein WEB1, protein t 100.0 1.4E-41 4.9E-46 317.6 26.8 288 144-442 11-334 (416)
38 1r5m_A SIR4-interacting protei 100.0 2.4E-40 8.2E-45 309.9 33.9 279 143-442 106-422 (425)
39 4h5i_A Guanine nucleotide-exch 100.0 6E-41 2.1E-45 306.9 28.1 283 145-442 14-340 (365)
40 3ow8_A WD repeat-containing pr 100.0 1E-39 3.5E-44 293.4 34.4 248 137-401 72-320 (321)
41 4gqb_B Methylosome protein 50; 100.0 1.7E-39 5.7E-44 294.2 35.7 249 141-405 78-334 (344)
42 2pm7_B Protein transport prote 100.0 7.8E-40 2.7E-44 291.3 32.0 256 138-401 2-284 (297)
43 1r5m_A SIR4-interacting protei 100.0 3E-39 1E-43 302.5 37.3 282 142-442 42-358 (425)
44 4gga_A P55CDC, cell division c 100.0 5.5E-39 1.9E-43 300.3 38.9 276 147-442 107-392 (420)
45 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-39 6.1E-44 329.2 38.0 291 136-442 4-299 (814)
46 1got_B GT-beta; complex (GTP-b 100.0 1.4E-39 4.8E-44 295.4 33.2 251 134-399 86-340 (340)
47 3vl1_A 26S proteasome regulato 100.0 2.3E-39 8E-44 303.0 33.8 290 136-442 89-416 (420)
48 1yfq_A Cell cycle arrest prote 100.0 1.2E-39 4.1E-44 296.4 30.5 283 139-437 5-315 (342)
49 4aez_A CDC20, WD repeat-contai 100.0 7.4E-39 2.5E-43 297.6 36.2 284 138-442 84-377 (401)
50 4ggc_A P55CDC, cell division c 100.0 2.9E-38 9.8E-43 284.2 38.7 275 148-442 28-312 (318)
51 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-38 4.2E-43 337.1 41.7 291 136-442 606-910 (1249)
52 3frx_A Guanine nucleotide-bind 100.0 4.8E-39 1.6E-43 289.2 32.8 256 135-403 55-318 (319)
53 3vl1_A 26S proteasome regulato 100.0 6.9E-40 2.4E-44 306.6 28.0 279 146-442 57-362 (420)
54 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.3E-39 2.5E-43 291.2 33.2 260 141-409 57-342 (345)
55 3bg1_A Protein SEC13 homolog; 100.0 6.1E-40 2.1E-44 294.6 25.5 267 139-442 7-290 (316)
56 1gxr_A ESG1, transducin-like e 100.0 1.8E-38 6E-43 287.8 32.2 278 144-442 8-293 (337)
57 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-39 8E-44 307.7 27.4 291 139-442 201-514 (524)
58 3dw8_B Serine/threonine-protei 100.0 4E-38 1.4E-42 297.1 35.5 282 143-441 26-442 (447)
59 2pbi_B Guanine nucleotide-bind 100.0 2.7E-38 9.3E-43 288.3 33.1 253 134-399 95-354 (354)
60 3iz6_a 40S ribosomal protein R 100.0 3.3E-39 1.1E-43 297.5 25.8 262 134-404 97-377 (380)
61 4g56_B MGC81050 protein; prote 100.0 3.4E-38 1.2E-42 287.9 31.3 252 137-404 86-345 (357)
62 1pgu_A Actin interacting prote 100.0 5.5E-38 1.9E-42 308.2 35.1 287 136-442 54-363 (615)
63 2oaj_A Protein SNI1; WD40 repe 100.0 6.8E-38 2.3E-42 317.4 36.2 285 142-442 55-602 (902)
64 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-38 4.5E-43 296.1 28.4 283 147-442 36-339 (402)
65 2pm7_B Protein transport prote 100.0 9.4E-38 3.2E-42 277.8 32.0 249 184-442 3-282 (297)
66 2hes_X YDR267CP; beta-propelle 100.0 4.7E-38 1.6E-42 284.1 30.6 254 137-402 48-328 (330)
67 3jrp_A Fusion protein of prote 100.0 8.5E-38 2.9E-42 288.1 31.8 259 136-402 2-287 (379)
68 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-37 1.2E-41 289.6 36.1 273 138-442 126-411 (435)
69 2xzm_R RACK1; ribosome, transl 100.0 2.1E-37 7.3E-42 281.5 33.6 256 135-404 66-342 (343)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.1E-37 1.7E-41 289.3 37.1 281 134-442 148-439 (445)
71 1erj_A Transcriptional repress 100.0 3.1E-37 1.1E-41 285.6 34.6 243 145-402 123-389 (393)
72 3v7d_B Cell division control p 100.0 1.1E-36 3.8E-41 288.7 38.0 281 136-442 112-418 (464)
73 4ery_A WD repeat-containing pr 100.0 8.1E-37 2.8E-41 274.1 34.8 250 180-442 13-265 (312)
74 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-37 4.1E-42 283.5 29.5 290 138-442 4-334 (351)
75 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-37 4.9E-42 328.9 34.5 296 134-442 646-1031(1249)
76 3v7d_B Cell division control p 100.0 1.1E-36 3.9E-41 288.6 36.4 282 134-441 151-459 (464)
77 1pgu_A Actin interacting prote 100.0 1.5E-36 5.3E-41 297.9 37.9 295 134-442 149-569 (615)
78 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-37 6.3E-42 314.2 30.1 204 141-358 13-245 (902)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-36 1.8E-40 282.4 37.0 275 136-442 109-388 (445)
80 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-36 4E-41 289.2 25.2 270 134-442 123-425 (524)
81 3jrp_A Fusion protein of prote 100.0 1.2E-35 4.1E-40 273.7 30.3 252 181-442 2-284 (379)
82 3dm0_A Maltose-binding peripla 100.0 1.4E-35 4.7E-40 294.9 32.9 253 136-401 421-692 (694)
83 4aez_A CDC20, WD repeat-contai 100.0 3.9E-35 1.3E-39 272.5 33.6 258 135-410 123-388 (401)
84 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.1E-35 3.1E-39 274.2 34.8 283 145-441 4-387 (450)
85 2xyi_A Probable histone-bindin 100.0 2.4E-35 8.2E-40 276.3 30.3 251 138-442 121-407 (430)
86 4aow_A Guanine nucleotide-bind 100.0 7.6E-35 2.6E-39 264.3 31.5 257 135-404 76-339 (340)
87 3k26_A Polycomb protein EED; W 100.0 2.3E-35 8E-40 270.4 27.6 246 144-401 68-365 (366)
88 3ei3_B DNA damage-binding prot 100.0 4E-35 1.4E-39 270.9 29.2 247 141-402 114-382 (383)
89 3jro_A Fusion protein of prote 100.0 1.6E-35 5.4E-40 296.1 27.4 257 138-402 2-285 (753)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 5.1E-35 1.7E-39 271.9 28.8 258 136-405 72-345 (402)
91 3dwl_C Actin-related protein 2 100.0 3.4E-36 1.2E-40 277.4 20.0 246 186-441 7-277 (377)
92 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-35 7.3E-40 273.7 25.0 266 142-442 12-294 (588)
93 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-34 4.2E-39 266.4 30.0 245 186-442 4-271 (372)
94 1sq9_A Antiviral protein SKI8; 100.0 1E-34 3.4E-39 269.5 28.2 257 136-404 53-397 (397)
95 4e54_B DNA damage-binding prot 100.0 3.9E-35 1.3E-39 275.4 25.0 257 136-405 155-433 (435)
96 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-34 3.9E-39 263.6 26.5 268 152-441 43-329 (343)
97 3mkq_A Coatomer beta'-subunit; 100.0 4.4E-34 1.5E-38 289.7 33.6 249 181-442 4-256 (814)
98 3zwl_B Eukaryotic translation 100.0 2.2E-33 7.4E-38 257.6 34.8 248 180-442 22-301 (369)
99 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-33 5.6E-38 256.8 33.0 282 135-442 9-333 (355)
100 3gre_A Serine/threonine-protei 100.0 3.3E-35 1.1E-39 276.3 22.2 267 152-442 34-356 (437)
101 3i2n_A WD repeat-containing pr 100.0 5.2E-34 1.8E-38 260.6 29.0 249 181-442 9-288 (357)
102 4a11_B DNA excision repair pro 100.0 1.4E-33 4.8E-38 262.5 32.3 283 142-442 96-402 (408)
103 4gga_A P55CDC, cell division c 100.0 1.5E-33 5.1E-38 263.4 32.1 267 135-421 135-414 (420)
104 1yfq_A Cell cycle arrest prote 100.0 6.5E-34 2.2E-38 258.5 28.7 241 184-442 5-279 (342)
105 3bws_A Protein LP49; two-domai 100.0 4.1E-33 1.4E-37 261.7 34.7 292 136-442 114-429 (433)
106 3dw8_B Serine/threonine-protei 100.0 2.4E-34 8.4E-39 271.2 25.6 244 189-442 27-370 (447)
107 1l0q_A Surface layer protein; 100.0 1.4E-32 4.8E-37 254.5 36.3 265 158-442 2-272 (391)
108 4gq1_A NUP37; propeller, trans 100.0 2.6E-34 8.8E-39 265.9 23.9 259 141-438 85-383 (393)
109 3jro_A Fusion protein of prote 100.0 9.1E-34 3.1E-38 283.4 27.2 250 183-442 2-282 (753)
110 3odt_A Protein DOA1; ubiquitin 100.0 2E-32 6.9E-37 245.3 32.1 240 180-442 8-252 (313)
111 4h5i_A Guanine nucleotide-exch 100.0 1E-32 3.6E-37 252.3 30.2 248 139-402 67-343 (365)
112 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-33 1.1E-37 259.2 25.8 260 139-433 46-349 (588)
113 1l0q_A Surface layer protein; 100.0 1.4E-30 4.9E-35 241.0 40.0 287 135-442 22-339 (391)
114 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-31 3.6E-36 244.8 29.2 247 172-442 3-268 (355)
115 3mmy_A MRNA export factor; mRN 100.0 1.9E-31 6.6E-36 244.4 29.4 247 179-442 28-301 (368)
116 4ggc_A P55CDC, cell division c 100.0 5.8E-31 2E-35 236.4 31.9 251 134-404 54-317 (318)
117 1p22_A F-BOX/WD-repeat protein 100.0 7.6E-31 2.6E-35 246.3 32.7 231 186-442 129-362 (435)
118 2w18_A PALB2, fancn, partner a 100.0 3.6E-31 1.2E-35 230.8 27.8 292 136-442 26-354 (356)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-30 4.1E-35 246.0 31.6 249 140-401 97-390 (450)
120 3lrv_A PRE-mRNA-splicing facto 100.0 9.5E-32 3.2E-36 244.3 20.8 229 197-442 43-289 (343)
121 3bg1_A Protein SEC13 homolog; 100.0 3.2E-31 1.1E-35 237.8 23.5 212 137-355 49-293 (316)
122 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-30 7.1E-35 235.6 26.3 262 136-410 48-345 (351)
123 3bws_A Protein LP49; two-domai 100.0 3.3E-29 1.1E-33 235.1 31.6 279 144-442 59-387 (433)
124 1nir_A Nitrite reductase; hemo 100.0 4.5E-28 1.5E-32 232.1 34.4 294 135-442 169-511 (543)
125 2xyi_A Probable histone-bindin 100.0 5.3E-29 1.8E-33 233.2 26.8 209 225-442 122-350 (430)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.3E-29 1.8E-33 231.5 26.2 281 144-442 61-384 (415)
127 1nir_A Nitrite reductase; hemo 100.0 1.1E-27 3.9E-32 229.3 31.7 276 152-442 144-455 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.4E-28 2.9E-32 223.5 29.7 272 134-425 104-409 (415)
129 2w18_A PALB2, fancn, partner a 100.0 2.1E-27 7.3E-32 207.1 28.4 254 136-400 77-355 (356)
130 1ri6_A Putative isomerase YBHE 100.0 5.5E-27 1.9E-31 212.7 29.2 273 159-442 6-305 (343)
131 2ecf_A Dipeptidyl peptidase IV 100.0 2.9E-27 1E-31 237.1 29.4 279 145-442 36-410 (741)
132 3u4y_A Uncharacterized protein 100.0 5.6E-26 1.9E-30 205.2 31.5 278 151-442 3-301 (331)
133 4gq1_A NUP37; propeller, trans 100.0 1.2E-27 4.2E-32 221.1 20.0 225 136-401 127-388 (393)
134 3vgz_A Uncharacterized protein 100.0 3.2E-25 1.1E-29 202.0 34.7 272 144-435 39-334 (353)
135 2ojh_A Uncharacterized protein 99.9 1.8E-25 6.2E-30 198.1 23.6 253 163-435 17-292 (297)
136 1pby_B Quinohemoprotein amine 99.9 8.6E-25 2.9E-29 197.7 28.2 261 159-442 2-307 (337)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-25 5.2E-30 224.0 23.7 285 147-442 18-390 (723)
138 1ri6_A Putative isomerase YBHE 99.9 4.3E-24 1.5E-28 193.6 30.5 269 143-425 35-334 (343)
139 3hfq_A Uncharacterized protein 99.9 5.3E-24 1.8E-28 193.6 31.1 266 166-441 14-313 (347)
140 3o4h_A Acylamino-acid-releasin 99.9 1.7E-24 5.8E-29 210.8 28.2 270 144-442 20-312 (582)
141 3u4y_A Uncharacterized protein 99.9 3.2E-23 1.1E-27 187.0 33.6 276 135-425 30-326 (331)
142 2z3z_A Dipeptidyl aminopeptida 99.9 2E-24 6.8E-29 215.3 28.0 279 146-442 82-432 (706)
143 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-24 3.7E-29 217.2 25.4 280 148-436 28-378 (706)
144 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-24 8.1E-29 216.0 27.8 283 146-441 109-455 (741)
145 1xfd_A DIP, dipeptidyl aminope 99.9 2.3E-24 7.8E-29 215.5 27.2 290 135-435 47-431 (723)
146 1k32_A Tricorn protease; prote 99.9 5.8E-24 2E-28 220.4 28.3 290 130-442 84-458 (1045)
147 2ojh_A Uncharacterized protein 99.9 5.7E-24 2E-28 188.4 24.4 249 131-393 27-293 (297)
148 1k32_A Tricorn protease; prote 99.9 7.4E-24 2.5E-28 219.6 28.6 280 137-442 195-499 (1045)
149 1pby_B Quinohemoprotein amine 99.9 2.5E-23 8.7E-28 188.0 27.4 246 147-413 35-321 (337)
150 3scy_A Hypothetical bacterial 99.9 1.8E-22 6.2E-27 184.4 30.7 273 158-441 13-333 (361)
151 3vgz_A Uncharacterized protein 99.9 7.6E-23 2.6E-27 186.3 27.9 245 189-442 39-300 (353)
152 3hfq_A Uncharacterized protein 99.9 9.8E-23 3.4E-27 185.2 28.5 254 142-406 36-323 (347)
153 1jmx_B Amine dehydrogenase; ox 99.9 5.5E-23 1.9E-27 186.8 26.6 270 150-442 4-322 (349)
154 3pe7_A Oligogalacturonate lyas 99.9 3.7E-23 1.3E-27 191.0 25.7 301 132-441 17-378 (388)
155 3scy_A Hypothetical bacterial 99.9 6.4E-22 2.2E-26 180.8 31.5 267 144-422 48-360 (361)
156 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.9E-22 6.4E-27 184.5 25.7 275 160-442 4-338 (365)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 5.1E-22 1.7E-26 185.1 28.1 201 145-356 36-279 (434)
158 1z68_A Fibroblast activation p 99.9 1.2E-22 4E-27 203.0 23.0 284 150-442 20-388 (719)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-20 3.7E-25 176.2 28.7 168 143-313 90-279 (434)
160 1z68_A Fibroblast activation p 99.9 1.3E-21 4.6E-26 195.3 21.6 290 135-442 46-440 (719)
161 3o4h_A Acylamino-acid-releasin 99.9 1.1E-21 3.6E-26 191.1 19.6 230 189-442 20-273 (582)
162 3c5m_A Oligogalacturonate lyas 99.9 7.4E-21 2.5E-25 175.9 21.7 291 134-441 19-378 (396)
163 2oiz_A Aromatic amine dehydrog 99.9 1.7E-19 5.8E-24 164.1 29.7 269 135-425 41-359 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 5.8E-20 2E-24 167.9 26.5 248 144-403 38-342 (365)
165 1jmx_B Amine dehydrogenase; ox 99.9 2.1E-19 7E-24 163.2 28.2 257 135-412 31-335 (349)
166 4a5s_A Dipeptidyl peptidase 4 99.9 4E-20 1.4E-24 184.7 25.4 279 146-434 17-383 (740)
167 3azo_A Aminopeptidase; POP fam 99.9 1.4E-19 4.7E-24 179.0 27.8 293 138-441 16-363 (662)
168 1q7f_A NHL, brain tumor CG1071 99.8 6.3E-18 2.2E-22 149.0 31.8 242 142-403 26-281 (286)
169 1q7f_A NHL, brain tumor CG1071 99.8 5.1E-18 1.7E-22 149.6 30.3 237 188-442 27-277 (286)
170 3fvz_A Peptidyl-glycine alpha- 99.8 2.6E-18 9.1E-23 154.5 28.0 240 190-442 23-319 (329)
171 2oiz_A Aromatic amine dehydrog 99.8 1.9E-18 6.3E-23 157.2 26.5 258 166-442 29-331 (361)
172 2dg1_A DRP35, lactonase; beta 99.8 4E-18 1.4E-22 153.8 27.0 278 146-435 6-300 (333)
173 2gop_A Trilobed protease; beta 99.8 9.3E-18 3.2E-22 152.2 27.4 261 146-441 15-327 (347)
174 2z2n_A Virginiamycin B lyase; 99.8 7.6E-16 2.6E-20 136.4 38.2 276 141-439 10-290 (299)
175 4a5s_A Dipeptidyl peptidase 4 99.8 5E-19 1.7E-23 176.9 19.5 237 191-441 17-349 (740)
176 3fvz_A Peptidyl-glycine alpha- 99.8 1.6E-17 5.6E-22 149.3 26.6 245 145-402 23-322 (329)
177 1qks_A Cytochrome CD1 nitrite 99.8 2.6E-16 8.9E-21 150.3 36.1 287 146-442 197-535 (567)
178 1qks_A Cytochrome CD1 nitrite 99.8 4.3E-16 1.5E-20 148.8 34.0 274 158-442 167-474 (567)
179 3pe7_A Oligogalacturonate lyas 99.8 7E-18 2.4E-22 155.5 21.1 256 180-442 20-326 (388)
180 3e5z_A Putative gluconolactona 99.8 2.5E-16 8.7E-21 139.4 30.1 241 135-440 17-282 (296)
181 3azo_A Aminopeptidase; POP fam 99.8 1.9E-17 6.4E-22 163.7 25.2 251 138-407 60-374 (662)
182 3dsm_A Uncharacterized protein 99.8 1.5E-16 5.1E-21 142.8 28.6 257 166-442 15-299 (328)
183 2xdw_A Prolyl endopeptidase; a 99.8 7.3E-17 2.5E-21 160.5 28.5 248 189-442 123-411 (710)
184 3dsm_A Uncharacterized protein 99.8 6.7E-16 2.3E-20 138.6 29.2 261 146-421 44-319 (328)
185 2qc5_A Streptogramin B lactona 99.8 1.9E-14 6.5E-19 127.3 37.1 275 143-441 17-296 (300)
186 2bkl_A Prolyl endopeptidase; m 99.8 6.4E-17 2.2E-21 160.5 22.5 275 153-442 75-394 (695)
187 1rwi_B Serine/threonine-protei 99.8 1.1E-15 3.8E-20 133.3 27.6 235 147-442 25-261 (270)
188 3c5m_A Oligogalacturonate lyas 99.7 4.1E-17 1.4E-21 150.7 17.6 237 193-442 38-326 (396)
189 2xdw_A Prolyl endopeptidase; a 99.7 8.7E-16 3E-20 152.8 27.6 248 143-404 122-416 (710)
190 2dg1_A DRP35, lactonase; beta 99.7 1.2E-14 4.1E-19 130.9 31.8 243 135-393 34-301 (333)
191 3no2_A Uncharacterized protein 99.7 3.6E-15 1.2E-19 129.9 27.2 245 158-419 5-271 (276)
192 2mad_H Methylamine dehydrogena 99.7 3.4E-14 1.2E-18 129.2 34.0 269 153-442 28-347 (373)
193 3sjl_D Methylamine dehydrogena 99.7 3.5E-15 1.2E-19 133.8 25.7 274 151-442 38-360 (386)
194 2gop_A Trilobed protease; beta 99.7 3.2E-15 1.1E-19 135.4 25.6 241 146-414 59-341 (347)
195 2bkl_A Prolyl endopeptidase; m 99.7 7.8E-16 2.7E-20 152.7 22.4 248 143-405 118-400 (695)
196 3sjl_D Methylamine dehydrogena 99.7 1.8E-14 6.1E-19 129.2 27.2 268 134-424 68-384 (386)
197 2mad_H Methylamine dehydrogena 99.7 2.2E-13 7.4E-18 123.9 34.5 252 135-409 57-357 (373)
198 1yr2_A Prolyl oligopeptidase; 99.7 4.1E-15 1.4E-19 148.5 24.3 278 154-442 115-438 (741)
199 2z2n_A Virginiamycin B lyase; 99.7 2.4E-13 8.3E-18 120.1 32.9 237 188-442 12-252 (299)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 4.7E-14 1.6E-18 125.8 26.7 249 189-442 16-296 (314)
201 3no2_A Uncharacterized protein 99.7 5.7E-14 1.9E-18 122.3 26.5 213 201-432 4-230 (276)
202 3c75_H MADH, methylamine dehyd 99.7 2.2E-14 7.4E-19 131.1 24.5 257 168-442 99-399 (426)
203 2qe8_A Uncharacterized protein 99.7 1.9E-14 6.5E-19 130.0 22.9 267 146-438 17-314 (343)
204 3g4e_A Regucalcin; six bladed 99.6 4.8E-13 1.7E-17 118.2 29.7 241 189-435 11-263 (297)
205 1yr2_A Prolyl oligopeptidase; 99.6 6.1E-14 2.1E-18 140.1 23.2 247 143-404 160-443 (741)
206 3hrp_A Uncharacterized protein 99.6 9E-13 3.1E-17 121.5 29.1 235 191-441 131-406 (409)
207 2qc5_A Streptogramin B lactona 99.6 6.5E-12 2.2E-16 110.9 33.8 236 189-442 18-257 (300)
208 3c75_H MADH, methylamine dehyd 99.6 3E-13 1E-17 123.6 25.4 255 134-409 108-409 (426)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.4E-12 4.7E-17 116.2 28.1 243 142-402 14-299 (314)
210 3hrp_A Uncharacterized protein 99.6 2.5E-12 8.4E-17 118.6 30.2 236 146-400 131-408 (409)
211 3e5z_A Putative gluconolactona 99.6 7.7E-13 2.6E-17 116.9 25.3 194 230-442 26-243 (296)
212 3dr2_A Exported gluconolactona 99.6 2.6E-12 9E-17 113.9 28.0 239 189-440 43-302 (305)
213 2ghs_A AGR_C_1268P; regucalcin 99.6 1.6E-11 5.4E-16 109.9 31.2 228 147-435 50-293 (326)
214 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-13 6.1E-18 123.3 17.5 172 192-433 39-232 (388)
215 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-13 6E-18 123.3 17.4 172 147-341 39-230 (388)
216 3g4e_A Regucalcin; six bladed 99.5 1.4E-11 4.8E-16 108.7 28.6 229 143-391 10-261 (297)
217 1rwi_B Serine/threonine-protei 99.5 2.3E-12 7.8E-17 112.1 22.4 200 145-357 66-266 (270)
218 3dr2_A Exported gluconolactona 99.5 7.6E-12 2.6E-16 110.9 25.7 242 137-399 36-303 (305)
219 3iuj_A Prolyl endopeptidase; h 99.5 3.8E-12 1.3E-16 125.9 24.7 246 143-405 126-408 (693)
220 1mda_H Methylamine dehydrogena 99.5 3E-12 1E-16 115.1 21.4 249 169-442 47-343 (368)
221 2ece_A 462AA long hypothetical 99.5 1.3E-10 4.5E-15 104.9 30.2 233 197-433 88-399 (462)
222 3iuj_A Prolyl endopeptidase; h 99.5 5E-12 1.7E-16 125.1 22.9 241 189-442 127-402 (693)
223 1mda_H Methylamine dehydrogena 99.5 6.2E-12 2.1E-16 113.0 20.7 260 134-423 55-366 (368)
224 1yiq_A Quinohemoprotein alcoho 99.4 9E-11 3.1E-15 115.4 28.2 260 158-434 121-538 (689)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2E-10 6.7E-15 105.1 26.9 257 158-442 103-375 (376)
226 1kb0_A Quinohemoprotein alcoho 99.4 3.7E-11 1.3E-15 117.9 21.9 276 159-442 78-504 (677)
227 1kb0_A Quinohemoprotein alcoho 99.4 2.7E-10 9.1E-15 111.9 28.0 257 158-432 128-538 (677)
228 2hz6_A Endoplasmic reticulum t 99.4 4.3E-13 1.5E-17 122.1 7.6 202 201-425 8-215 (369)
229 2ece_A 462AA long hypothetical 99.4 3E-10 1E-14 102.5 25.4 236 152-390 88-399 (462)
230 2iwa_A Glutamine cyclotransfer 99.4 2.9E-10 9.9E-15 96.6 23.7 204 181-440 10-232 (266)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.4 7.1E-10 2.4E-14 101.4 27.7 257 158-442 53-334 (376)
232 2hz6_A Endoplasmic reticulum t 99.4 1.7E-14 5.9E-19 131.3 -3.5 219 158-404 9-238 (369)
233 1yiq_A Quinohemoprotein alcoho 99.4 1.2E-10 3.9E-15 114.7 23.1 269 158-442 70-502 (689)
234 1npe_A Nidogen, entactin; glyc 99.3 6.3E-09 2.2E-13 90.1 31.2 254 159-425 2-262 (267)
235 2qe8_A Uncharacterized protein 99.3 8.3E-11 2.8E-15 106.0 19.2 223 191-442 17-275 (343)
236 3nol_A Glutamine cyclotransfer 99.3 7.2E-10 2.5E-14 92.9 23.2 196 181-432 32-243 (262)
237 1fwx_A Nitrous oxide reductase 99.3 5.8E-10 2E-14 104.3 22.9 228 201-433 100-406 (595)
238 3hxj_A Pyrrolo-quinoline quino 99.3 8.7E-10 3E-14 98.7 22.5 269 137-441 51-320 (330)
239 2ghs_A AGR_C_1268P; regucalcin 99.2 3.4E-09 1.2E-13 94.7 24.2 186 145-344 89-291 (326)
240 1fwx_A Nitrous oxide reductase 99.2 4.2E-10 1.4E-14 105.3 18.5 237 156-404 100-433 (595)
241 3hxj_A Pyrrolo-quinoline quino 99.2 3.1E-10 1.1E-14 101.6 17.1 258 149-442 23-281 (330)
242 3nok_A Glutaminyl cyclase; bet 99.2 3E-09 1E-13 89.1 21.6 194 223-432 44-253 (268)
243 3mbr_X Glutamine cyclotransfer 99.2 1.1E-08 3.9E-13 84.9 23.8 196 181-432 10-222 (243)
244 2iwa_A Glutamine cyclotransfer 99.2 1.3E-08 4.5E-13 86.4 22.7 205 134-355 8-237 (266)
245 2p4o_A Hypothetical protein; p 99.1 2.2E-07 7.6E-12 82.0 30.9 240 135-393 22-279 (306)
246 2p4o_A Hypothetical protein; p 99.1 4.9E-07 1.7E-11 79.8 31.5 237 181-433 23-277 (306)
247 1npe_A Nidogen, entactin; glyc 99.1 1.7E-07 5.7E-12 81.0 26.8 224 145-384 35-263 (267)
248 1kv9_A Type II quinohemoprotei 99.1 2.1E-08 7.3E-13 98.3 23.3 268 159-442 67-485 (668)
249 2ad6_A Methanol dehydrogenase 99.1 1.4E-07 4.7E-12 90.7 28.3 257 158-432 115-525 (571)
250 3nok_A Glutaminyl cyclase; bet 99.1 2.5E-08 8.4E-13 83.6 20.0 196 181-390 44-253 (268)
251 1kv9_A Type II quinohemoprotei 99.1 1.3E-07 4.4E-12 92.8 27.6 260 158-433 117-520 (668)
252 2fp8_A Strictosidine synthase; 99.1 1.7E-07 5.9E-12 83.4 26.2 239 146-402 19-313 (322)
253 3nol_A Glutamine cyclotransfer 99.0 5.7E-08 1.9E-12 81.5 20.7 192 135-345 31-245 (262)
254 1w6s_A Methanol dehydrogenase 99.0 1.5E-07 5E-12 90.4 24.9 276 160-442 64-500 (599)
255 1w6s_A Methanol dehydrogenase 99.0 3.1E-07 1.1E-11 88.2 27.0 254 161-433 124-535 (599)
256 2fp8_A Strictosidine synthase; 99.0 6.5E-07 2.2E-11 79.7 27.5 241 191-442 19-310 (322)
257 4a2l_A BT_4663, two-component 99.0 1.9E-06 6.6E-11 86.7 33.5 275 148-441 175-476 (795)
258 2ad6_A Methanol dehydrogenase 99.0 1.7E-07 5.8E-12 90.0 24.6 274 160-442 64-491 (571)
259 1k3i_A Galactose oxidase precu 99.0 4.8E-07 1.6E-11 88.9 28.1 280 150-434 190-530 (656)
260 4a2l_A BT_4663, two-component 99.0 4.2E-06 1.4E-10 84.2 35.1 272 145-441 214-522 (795)
261 3mbr_X Glutamine cyclotransfer 98.9 6.3E-07 2.1E-11 74.5 23.2 191 135-344 9-223 (243)
262 3v64_C Agrin; beta propeller, 98.9 1E-05 3.5E-10 72.6 32.6 247 145-410 33-283 (349)
263 3tc9_A Hypothetical hydrolase; 98.9 8.8E-07 3E-11 81.9 25.7 240 192-441 138-426 (430)
264 1flg_A Protein (quinoprotein e 98.9 1.6E-06 5.4E-11 83.4 28.0 260 158-433 117-548 (582)
265 1ijq_A LDL receptor, low-densi 98.9 1.7E-05 5.8E-10 70.2 32.6 235 161-410 4-246 (316)
266 1flg_A Protein (quinoprotein e 98.9 8.6E-07 2.9E-11 85.2 25.8 278 158-442 69-513 (582)
267 2xzh_A Clathrin heavy chain 1; 98.9 5.2E-06 1.8E-10 71.1 26.6 260 167-438 48-325 (365)
268 3v65_B Low-density lipoprotein 98.8 1.5E-05 5E-10 72.7 31.1 256 147-421 78-337 (386)
269 4hw6_A Hypothetical protein, I 98.8 5.6E-06 1.9E-10 76.6 27.8 238 192-441 140-429 (433)
270 3v64_C Agrin; beta propeller, 98.8 1.4E-05 4.6E-10 71.8 29.6 230 194-440 37-270 (349)
271 3v9f_A Two-component system se 98.8 1.3E-05 4.5E-10 80.5 32.2 275 145-442 257-565 (781)
272 3qqz_A Putative uncharacterize 98.8 7E-06 2.4E-10 69.3 25.2 200 231-441 26-249 (255)
273 3p5b_L Low density lipoprotein 98.8 3.7E-05 1.3E-09 70.3 31.8 166 141-312 107-277 (400)
274 1ijq_A LDL receptor, low-densi 98.8 2.6E-05 8.8E-10 69.0 29.8 221 204-441 3-234 (316)
275 3v65_B Low-density lipoprotein 98.8 1.3E-05 4.3E-10 73.1 27.8 231 194-441 80-314 (386)
276 2xbg_A YCF48-like protein; pho 98.8 9.5E-05 3.2E-09 65.7 34.4 274 145-442 35-319 (327)
277 3v9f_A Two-component system se 98.8 4.2E-05 1.5E-09 76.8 33.8 274 146-442 211-521 (781)
278 3tc9_A Hypothetical hydrolase; 98.7 5.6E-06 1.9E-10 76.5 24.8 238 147-401 138-429 (430)
279 1bpo_A Protein (clathrin); cla 98.7 3.8E-05 1.3E-09 68.6 28.1 261 166-438 46-324 (494)
280 3qqz_A Putative uncharacterize 98.7 2E-05 6.7E-10 66.5 24.9 203 140-354 21-252 (255)
281 3kya_A Putative phosphatase; s 98.7 5.2E-06 1.8E-10 76.9 23.1 248 147-408 140-481 (496)
282 3sov_A LRP-6, low-density lipo 98.7 5.6E-05 1.9E-09 66.7 28.6 231 167-410 12-246 (318)
283 2xe4_A Oligopeptidase B; hydro 98.7 1E-05 3.4E-10 80.7 26.2 198 147-353 175-398 (751)
284 4hw6_A Hypothetical protein, I 98.7 2E-05 6.9E-10 72.8 26.3 238 147-401 140-432 (433)
285 3p5b_L Low density lipoprotein 98.6 0.00011 3.7E-09 67.2 30.0 222 204-441 85-316 (400)
286 1k3i_A Galactose oxidase precu 98.6 2.3E-06 7.7E-11 84.1 18.5 238 148-391 245-530 (656)
287 3s94_A LRP-6, low-density lipo 98.6 0.00034 1.2E-08 67.7 33.1 282 146-440 84-418 (619)
288 3m0c_C LDL receptor, low-densi 98.6 0.00015 5.1E-09 71.9 30.5 237 160-410 397-640 (791)
289 2xe4_A Oligopeptidase B; hydro 98.5 7.6E-06 2.6E-10 81.5 20.1 200 233-441 175-394 (751)
290 3sov_A LRP-6, low-density lipo 98.5 0.00011 3.7E-09 64.9 25.4 222 204-441 6-234 (318)
291 1n7d_A LDL receptor, low-densi 98.5 4E-06 1.4E-10 82.4 16.4 242 167-421 385-633 (699)
292 2p9w_A MAL S 1 allergenic prot 98.4 0.00022 7.7E-09 61.9 24.4 198 147-355 14-265 (334)
293 2ism_A Putative oxidoreductase 98.4 0.00055 1.9E-08 61.3 28.2 237 191-436 31-337 (352)
294 3kya_A Putative phosphatase; s 98.4 0.00021 7.2E-09 66.3 25.2 239 192-441 140-471 (496)
295 3m0c_C LDL receptor, low-densi 98.4 0.00059 2E-08 67.7 29.9 208 142-356 420-633 (791)
296 2p9w_A MAL S 1 allergenic prot 98.4 9.1E-05 3.1E-09 64.3 21.0 172 231-402 12-215 (334)
297 3ei3_A DNA damage-binding prot 98.4 0.00067 2.3E-08 70.3 31.2 259 167-440 714-1057(1158)
298 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00083 2.8E-08 65.1 29.7 235 160-410 8-245 (628)
299 1n7d_A LDL receptor, low-densi 98.3 1.3E-05 4.5E-10 78.8 14.6 217 210-441 384-610 (699)
300 2xbg_A YCF48-like protein; pho 98.3 0.00083 2.9E-08 59.5 25.1 231 145-399 79-319 (327)
301 3s94_A LRP-6, low-density lipo 98.2 0.0011 3.7E-08 64.2 27.4 230 167-409 17-250 (619)
302 3amr_A 3-phytase; beta-propell 98.2 0.00031 1.1E-08 61.5 21.2 197 202-410 40-272 (355)
303 2vpj_A Kelch-like protein 12; 98.1 0.00072 2.5E-08 59.1 22.1 234 158-404 15-280 (301)
304 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0069 2.4E-07 58.6 36.9 158 146-314 80-239 (628)
305 2ism_A Putative oxidoreductase 98.1 0.0014 4.9E-08 58.6 24.1 228 146-390 31-333 (352)
306 3ei3_A DNA damage-binding prot 98.1 0.0092 3.1E-07 61.9 32.8 222 147-389 515-754 (1158)
307 3amr_A 3-phytase; beta-propell 98.1 0.00077 2.6E-08 59.1 21.1 188 244-442 40-260 (355)
308 3a9g_A Putative uncharacterize 98.1 0.0045 1.5E-07 55.4 27.7 234 145-390 28-330 (354)
309 3ii7_A Kelch-like protein 7; p 98.1 0.0012 4.3E-08 57.7 22.5 236 158-404 12-274 (306)
310 3a9g_A Putative uncharacterize 98.1 0.0053 1.8E-07 54.9 26.9 240 191-433 29-330 (354)
311 2g8s_A Glucose/sorbosone dehyd 98.0 0.0047 1.6E-07 55.3 25.5 245 191-438 18-347 (353)
312 2xn4_A Kelch-like protein 2; s 98.0 0.0019 6.6E-08 56.4 22.4 237 158-404 16-278 (302)
313 1xi4_A Clathrin heavy chain; a 98.0 0.00069 2.3E-08 69.7 20.8 244 167-421 47-308 (1630)
314 3sre_A PON1, serum paraoxonase 98.0 0.0035 1.2E-07 55.6 22.7 183 210-399 81-295 (355)
315 1zgk_A Kelch-like ECH-associat 97.9 0.0028 9.7E-08 55.5 21.3 234 158-404 25-289 (308)
316 2g8s_A Glucose/sorbosone dehyd 97.9 0.0056 1.9E-07 54.8 23.0 239 145-395 17-347 (353)
317 4asc_A Kelch repeat and BTB do 97.8 0.0074 2.5E-07 53.0 22.6 233 160-404 7-279 (315)
318 1cru_A Protein (soluble quinop 97.7 0.033 1.1E-06 51.6 29.1 105 145-251 26-162 (454)
319 2vpj_A Kelch-like protein 12; 97.7 0.0075 2.5E-07 52.5 20.1 192 158-356 63-279 (301)
320 2woz_A Kelch repeat and BTB do 97.6 0.022 7.4E-07 50.0 21.7 235 159-405 17-290 (318)
321 2xn4_A Kelch-like protein 2; s 97.6 0.0082 2.8E-07 52.3 18.8 192 158-356 62-277 (302)
322 3ott_A Two-component system se 97.6 0.037 1.3E-06 55.2 25.7 230 190-441 21-256 (758)
323 3ii7_A Kelch-like protein 7; p 97.5 0.009 3.1E-07 52.2 18.8 191 158-356 56-273 (306)
324 3sre_A PON1, serum paraoxonase 97.5 0.047 1.6E-06 48.4 28.9 203 141-354 45-297 (355)
325 1zgk_A Kelch-like ECH-associat 97.5 0.014 4.9E-07 50.9 19.4 223 201-436 24-273 (308)
326 2be1_A Serine/threonine-protei 97.5 0.0048 1.7E-07 54.2 15.4 195 203-407 11-236 (339)
327 3das_A Putative oxidoreductase 97.4 0.055 1.9E-06 47.8 26.9 242 137-390 23-326 (347)
328 3das_A Putative oxidoreductase 97.4 0.062 2.1E-06 47.5 29.1 241 189-432 30-325 (347)
329 3pbp_A Nucleoporin NUP82; beta 97.4 0.014 4.8E-07 52.4 17.4 138 253-398 40-208 (452)
330 3pbp_A Nucleoporin NUP82; beta 97.3 0.043 1.5E-06 49.3 19.6 146 283-439 29-206 (452)
331 1tl2_A L10, protein (tachylect 97.3 0.018 6E-07 46.7 15.4 177 202-395 4-203 (236)
332 3sbq_A Nitrous-oxide reductase 97.3 0.11 3.9E-06 48.2 25.7 239 160-403 72-409 (638)
333 2uvk_A YJHT; unknown function, 97.1 0.054 1.9E-06 48.3 19.3 241 158-409 20-349 (357)
334 1tl2_A L10, protein (tachylect 97.1 0.075 2.6E-06 43.1 19.3 178 245-439 5-204 (236)
335 2xzh_A Clathrin heavy chain 1; 97.1 0.11 3.8E-06 44.8 27.4 197 151-359 72-294 (365)
336 3sbq_A Nitrous-oxide reductase 97.1 0.021 7.3E-07 52.9 15.6 190 158-355 142-408 (638)
337 2be1_A Serine/threonine-protei 97.1 0.021 7.3E-07 50.2 15.3 112 159-273 11-140 (339)
338 1bpo_A Protein (clathrin); cla 97.0 0.18 6.2E-06 45.4 26.7 198 150-359 70-293 (494)
339 2uvk_A YJHT; unknown function, 97.0 0.033 1.1E-06 49.7 16.7 92 201-294 19-127 (357)
340 2zwa_A Leucine carboxyl methyl 97.0 0.15 5E-06 50.2 22.0 198 158-357 398-637 (695)
341 4asc_A Kelch repeat and BTB do 96.9 0.081 2.8E-06 46.2 18.3 151 158-314 46-223 (315)
342 1cru_A Protein (soluble quinop 96.9 0.25 8.4E-06 45.7 28.0 104 191-294 27-163 (454)
343 3s25_A Hypothetical 7-bladed b 96.9 0.2 6.7E-06 43.5 24.1 177 197-403 59-256 (302)
344 2woz_A Kelch repeat and BTB do 96.8 0.17 5.7E-06 44.3 19.0 150 158-314 57-233 (318)
345 3ott_A Two-component system se 96.8 0.51 1.8E-05 46.9 34.2 269 146-441 146-444 (758)
346 2zwa_A Leucine carboxyl methyl 96.7 0.28 9.5E-06 48.2 21.2 200 200-405 396-638 (695)
347 3s25_A Hypothetical 7-bladed b 96.6 0.31 1.1E-05 42.2 23.7 180 151-357 58-257 (302)
348 1xi4_A Clathrin heavy chain; a 96.0 0.34 1.2E-05 50.6 17.6 211 211-442 47-286 (1630)
349 3b7f_A Glycosyl hydrolase, BNR 95.7 1.1 3.8E-05 40.4 26.7 217 192-422 116-391 (394)
350 2wg3_C Hedgehog-interacting pr 95.1 2 6.9E-05 39.6 25.1 104 191-294 14-158 (463)
351 3qhy_B Beta-lactamase inhibito 94.4 2.1 7.2E-05 36.5 20.1 218 191-441 24-242 (282)
352 3b7f_A Glycosyl hydrolase, BNR 93.9 3.4 0.00012 37.1 27.0 99 159-260 23-144 (394)
353 2wg3_C Hedgehog-interacting pr 93.8 4.2 0.00014 37.5 28.0 105 146-252 14-158 (463)
354 3q6k_A 43.2 kDa salivary prote 92.4 5.7 0.0002 35.4 25.4 187 213-433 124-342 (381)
355 3uc1_A DNA gyrase subunit A; D 92.1 5.6 0.00019 34.7 25.8 270 158-436 3-321 (327)
356 1zi0_A DNA gyrase subunit A; b 90.3 8.2 0.00028 33.3 25.6 236 158-402 3-277 (307)
357 3qhy_B Beta-lactamase inhibito 90.2 7.8 0.00027 32.9 22.2 240 147-425 25-265 (282)
358 3l6v_A GYRA, DNA gyrase subuni 90.1 9.7 0.00033 33.8 24.6 148 198-354 3-179 (370)
359 4gq2_M Nucleoporin NUP120; bet 90.0 8 0.00027 39.5 15.5 38 192-229 237-274 (950)
360 4hvt_A Ritya.17583.B, post-pro 88.9 18 0.00063 35.4 23.0 232 194-434 132-416 (711)
361 3no0_A DNA gyrase subunit A; D 88.1 11 0.00038 31.8 20.5 154 146-312 24-196 (276)
362 3kci_A Probable E3 ubiquitin-p 86.2 18 0.00062 32.3 29.6 238 147-401 54-344 (389)
363 1wp5_A Topoisomerase IV; broke 85.4 18 0.0006 31.4 23.9 235 158-401 5-276 (323)
364 1suu_A DNA gyrase subunit A; t 85.4 17 0.00059 31.3 24.1 193 200-402 6-231 (312)
365 4gq2_M Nucleoporin NUP120; bet 84.9 16 0.00054 37.3 14.1 38 373-410 237-274 (950)
366 3l6v_A GYRA, DNA gyrase subuni 83.0 25 0.00084 31.2 26.7 148 154-311 4-179 (370)
367 3uc1_A DNA gyrase subunit A; D 82.8 23 0.00079 30.8 23.2 156 146-312 42-228 (327)
368 1sqj_A OXG-RCBH, oligoxylogluc 82.0 43 0.0015 33.3 27.2 144 145-293 14-188 (789)
369 3no0_A DNA gyrase subunit A; D 81.6 23 0.00078 29.9 19.5 157 145-312 67-246 (276)
370 1sqj_A OXG-RCBH, oligoxylogluc 80.4 49 0.0017 32.9 25.1 61 190-251 14-83 (789)
371 3q6k_A 43.2 kDa salivary prote 79.6 33 0.0011 30.5 23.0 190 169-390 124-342 (381)
372 4hvt_A Ritya.17583.B, post-pro 79.6 49 0.0017 32.4 23.8 243 148-401 131-429 (711)
373 1zi0_A DNA gyrase subunit A; b 78.4 32 0.0011 29.6 24.6 191 201-401 2-225 (307)
374 1suu_A DNA gyrase subunit A; t 78.3 32 0.0011 29.6 26.8 189 158-355 8-231 (312)
375 3zwu_A Alkaline phosphatase PH 74.2 12 0.00041 35.6 8.6 58 374-431 478-548 (592)
376 4fhn_B Nucleoporin NUP120; pro 72.1 16 0.00055 38.1 9.8 38 192-229 239-276 (1139)
377 3kci_A Probable E3 ubiquitin-p 71.5 55 0.0019 29.1 29.9 265 160-441 12-341 (389)
378 2cn3_A Xyloglucanase, beta-1,4 71.3 82 0.0028 31.0 31.4 106 146-253 23-153 (737)
379 4fhn_B Nucleoporin NUP120; pro 70.3 11 0.00038 39.4 8.1 38 373-410 239-276 (1139)
380 4a9v_A PHOX; hydrolase, beta-p 61.3 44 0.0015 31.6 9.2 60 373-432 477-549 (592)
381 3zwu_A Alkaline phosphatase PH 59.3 35 0.0012 32.4 8.5 57 193-249 478-548 (592)
382 3f7f_A Nucleoporin NUP120; nuc 57.8 17 0.0006 35.2 6.2 37 192-230 223-259 (729)
383 2cn3_A Xyloglucanase, beta-1,4 53.5 1.7E+02 0.0059 28.7 24.3 60 191-251 23-91 (737)
384 4a9v_A PHOX; hydrolase, beta-p 51.4 74 0.0025 30.1 9.0 60 191-250 476-549 (592)
385 3f7f_A Nucleoporin NUP120; nuc 46.0 23 0.00079 34.4 4.9 30 382-411 230-259 (729)
386 1zvt_A Topoisomerase IV subuni 44.3 1.3E+02 0.0046 24.8 14.2 149 245-402 3-163 (256)
387 1wp5_A Topoisomerase IV; broke 42.8 1.6E+02 0.0056 25.3 23.1 156 147-312 40-225 (323)
388 3mvd_K Regulator of chromosome 41.1 2E+02 0.0067 25.7 33.2 108 191-312 75-207 (423)
389 3mvd_K Regulator of chromosome 32.8 2.7E+02 0.0091 24.8 29.9 234 147-401 76-373 (423)
390 1zvt_A Topoisomerase IV subuni 30.4 2.3E+02 0.0078 23.3 14.3 137 302-441 11-159 (256)
391 4d9s_A UVB-resistance protein 29.4 3E+02 0.01 24.4 36.9 272 146-441 16-353 (406)
392 4gz8_A Semaphorin-3A; multi-do 26.6 4.1E+02 0.014 25.7 10.1 70 146-216 412-495 (667)
393 1q47_A Semaphorin 3A; beta pro 25.7 2E+02 0.0068 26.6 7.6 60 338-397 423-487 (495)
394 1q47_A Semaphorin 3A; beta pro 25.5 3.2E+02 0.011 25.2 8.9 70 147-216 405-487 (495)
395 3ol2_B Plexin-B1; beta-propell 25.0 2.2E+02 0.0075 26.6 7.7 59 338-397 402-461 (528)
396 3oky_B Putative uncharacterize 25.0 3.6E+02 0.012 25.4 9.1 71 146-216 403-495 (565)
397 3al9_A Plexin-A2; beta-propell 22.8 1.3E+02 0.0043 28.3 5.7 60 338-397 415-476 (539)
398 3mez_B Mannose-specific lectin 21.6 2.1E+02 0.0071 19.8 10.9 26 278-312 59-84 (113)
399 3nvq_A Semaphorin-7A; beta-pro 20.5 3E+02 0.01 26.1 7.7 58 159-216 381-444 (590)
400 1a12_A RCC1, regulator of chro 20.3 4.5E+02 0.015 23.2 28.3 236 146-398 59-361 (413)
401 3al9_A Plexin-A2; beta-propell 20.2 2.8E+02 0.0095 26.0 7.5 71 146-216 400-476 (539)
402 2krg_A Na(+)/H(+) exchange reg 20.1 3.3E+02 0.011 21.6 7.9 7 4-10 117-123 (216)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=357.42 Aligned_cols=294 Identities=19% Similarity=0.286 Sum_probs=263.5
Q ss_pred CCcceecccccccceEEEEeeCC---CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec
Q 013475 134 PGRLSTALCHHTKAVNSINWSPT---HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY 210 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 210 (442)
.+.+.+.+++|.+.|++++|+++ ++.+|++|+.|++|+||++..........+.+|...|.+++|++++.++++++.
T Consensus 21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 35566788899999999999985 267999999999999999976655566778999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 211 DCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
|++|++||+.+++.+..+. +...+.+++|+|++ .+|++++.||.|++||+++++....+..+...|.+++|+|++++|
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 9999999999999988887 67789999999996 899999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
++++. |+.|++||+++++.+..+ ..+...+.+++|+|++++|++++.|+.|++||+...... ..+. .
T Consensus 180 asg~~-------dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~---~~~~--~ 246 (321)
T 3ow8_A 180 ASGAI-------DGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA---GTLS--G 246 (321)
T ss_dssp EEEET-------TSCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE---EEEC--C
T ss_pred EEEcC-------CCeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee---EEEc--C
Confidence 99998 999999999988766544 346668999999999999999999999999999876543 3333 3
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+...|.+++|+|++++|++++.||.|+|||+.+++++.++.+|...|.+++|+|++ .+|++++.||.|+|||
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYD 318 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEe
Confidence 45779999999999999999999999999999999999999999999999999998 7999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-49 Score=368.69 Aligned_cols=289 Identities=18% Similarity=0.330 Sum_probs=263.8
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.....+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+.+ ......+.+|...|.+++|++++++|++|+.|++|+
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred CceEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 345678899999999999999 99999999999999999954 467788999999999999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
+||+.+++++..+. |...|.+++|+|++ .+|++|+.|+.|++||+++++.+..+.+|...|.++.|++++.+|++++.
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 99999999998887 88999999999996 89999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC--------------------CCeeEEEeCCCeEEEeeCC
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF--------------------DPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~~~~i~i~~~~ 354 (442)
|+.|++||++++.....+ ..+...+.++.|+|+ +.++++++.|+.|++||+.
T Consensus 255 -------D~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 255 -------DQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp -------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred -------CCeEEEEECCCCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 999999999987665443 456678999999996 6689999999999999998
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
.+... ..+.+ |...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++ .+|++|+.
T Consensus 327 ~~~~~---~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sgs~ 400 (410)
T 1vyh_C 327 TGMCL---MTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSV 400 (410)
T ss_dssp TTEEE---EEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SCEEEEET
T ss_pred CCceE---EEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC-CEEEEEeC
Confidence 87654 33444 45779999999999999999999999999999999999999999999999999998 79999999
Q ss_pred CCcEEEcC
Q 013475 435 NGDVSVYE 442 (442)
Q Consensus 435 dg~i~iwd 442 (442)
||.|+|||
T Consensus 401 D~~i~vW~ 408 (410)
T 1vyh_C 401 DQTVKVWE 408 (410)
T ss_dssp TSEEEEEC
T ss_pred CCcEEEEe
Confidence 99999997
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-48 Score=353.69 Aligned_cols=292 Identities=16% Similarity=0.285 Sum_probs=259.9
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
..+...+|.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+ ......+..|...|.+++|+|++++|++++.|+.
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTT--CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred cchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCC--CCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 45667889999999999999999 99999999999999999954 4677788889999999999999999999999999
Q ss_pred EEEEECCCCc----EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE
Q 013475 214 SRLVDVEKGI----ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 214 v~vwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
|++||+.+.. ....+. |...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 9999998763 334444 88899999999874 5899999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
|++++. |+.|++||++++.....+ ..+...+.+++|+|++.+|++++.|+.|++||++..... ..+...
T Consensus 199 l~sg~~-------d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~---~~~~~~ 267 (340)
T 1got_B 199 FVSGAC-------DASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL---MTYSHD 267 (340)
T ss_dssp EEEEET-------TSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---EEECCT
T ss_pred EEEEeC-------CCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE---EEEccC
Confidence 999998 999999999987765443 346678999999999999999999999999999876543 222222
Q ss_pred ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.....+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.||.|+|||
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 333468999999999999999999999999999999999999999999999999998 7999999999999998
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-47 Score=342.65 Aligned_cols=289 Identities=18% Similarity=0.275 Sum_probs=256.2
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
.+..++|.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+ ...+..+..|...|.+++|++++++|++|+.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 3567789999999999999999 99999999999999999954 47778888999999999999999999999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEee-CCCEEEe
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTI-NGKQFVS 291 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 291 (442)
++||+.+++.+..+. |...|.+++|+|++ .+|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 999999999998888 88999999999996 89999999999999999887 45677889999999999999 6789999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC--CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
++. |+.|++||++...........+...+..+.+++ ++.++++++.|+.|++||+++.... ..+.+|
T Consensus 159 gs~-------D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~~h- 227 (304)
T 2ynn_A 159 GCL-------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGH- 227 (304)
T ss_dssp EET-------TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE---EEEECC-
T ss_pred EeC-------CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc---eeeCCC-
Confidence 998 999999999988776666666666788888876 6789999999999999999887544 444444
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCC-EEEEeeCCCcEE
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPN-IIGSCSWNGDVS 439 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~ 439 (442)
...|..++|+|++.+|++|+.||.|++||+.+++++..+..|...+.+++|+|++.. ++++|+.||.+.
T Consensus 228 -~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 228 -MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp -SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred -CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 467899999999999999999999999999999999999999999999999998744 588887776443
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-47 Score=347.34 Aligned_cols=294 Identities=16% Similarity=0.270 Sum_probs=258.7
Q ss_pred cCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 133 IPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
...+...+|.+|.+.|++++|+|+ +++|++|+.||+|+|||..+. .....+..|...|.+++|+|++.+|++++.|+
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred cccEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 345677899999999999999999 899999999999999998544 56667777999999999999999999999999
Q ss_pred cEEEEECCCC------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-
Q 013475 213 SSRLVDVEKG------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI- 284 (442)
Q Consensus 213 ~v~vwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~- 284 (442)
.+++|++... .....+. |...|.+++|++++ ..|++++.|++|++||+++++.+..+.+|...|.++.|++
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 9999998653 2233333 88999999999985 8899999999999999999999999999999999999987
Q ss_pred -CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccce
Q 013475 285 -NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 285 -~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 363 (442)
++++|++++. |+.|++||+++++.+..+ ..+...+.+++|+|++.+|++++.|+.|++||++..... .
T Consensus 208 ~~g~~l~sgs~-------Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~---~ 276 (354)
T 2pbi_B 208 ETGNTFVSGGC-------DKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV---A 276 (354)
T ss_dssp SSCCEEEEEET-------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---E
T ss_pred CCCCEEEEEeC-------CCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE---E
Confidence 5789999998 999999999998765544 456678999999999999999999999999999876443 2
Q ss_pred eEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 364 RYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 364 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+..+.....+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++ .+|++|+.||.|+||+
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 23333333457899999999999999999999999999999999999999999999999999 7999999999999997
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-47 Score=340.08 Aligned_cols=293 Identities=28% Similarity=0.468 Sum_probs=262.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
..+..++.+|.+.|++++|+|+ +++|++|+.||.|+||++.+ .+....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCC--cccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 4667889999999999999999 99999999999999999954 46777888999999999999999999999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
++||+++++.+..+. |...|.++.|+|++ .+|++|+.|+.|++||+++++.+..+..|...|.++.|++++++|++++
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 999999999998888 88899999999996 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
. |+.|++||+++++.+......+...+..+.|+|+++++++++.|+.|++||+...... ..+..+.....
T Consensus 169 ~-------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~ 238 (312)
T 4ery_A 169 Y-------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKY 238 (312)
T ss_dssp T-------TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE---EEECSSCCSSS
T ss_pred C-------CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE---EEEEecCCceE
Confidence 8 9999999999988777766666778899999999999999999999999999887544 34444443333
Q ss_pred cEEEEEc-cCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee--CCCcEEEcC
Q 013475 374 PIKCSFS-LDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS--WNGDVSVYE 442 (442)
Q Consensus 374 v~~~~~s-~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd 442 (442)
.....++ +++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++ .|+.|++|+
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 309 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEEE
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC-CceEEEEccCCccEEEec
Confidence 3334444 578999999999999999999999999999999999999999998 7999887 699999995
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.5e-48 Score=356.17 Aligned_cols=298 Identities=17% Similarity=0.327 Sum_probs=257.1
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
...+.++|.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+ ......+..|...|.+++|+|++++|++++.|+.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTT--TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCC--CccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 45677899999999999999999 89999999999999999954 4777888899999999999999999999999999
Q ss_pred EEEEECCCCc-------EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-----ccCCCCEeEE
Q 013475 214 SRLVDVEKGI-------ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-----IQSLGPILDV 280 (442)
Q Consensus 214 v~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~ 280 (442)
|++||+.+.. ....+. |...+.++.|+|++...|++|+.|++|++||+++++.+..+ .+|...|.++
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 9999997532 223333 78889999999987678999999999999999999988777 5788899999
Q ss_pred EEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 281 EFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 281 ~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
.|++ ++++|++++. |+.|++||++...........|...+.+++|+|++.+|++++.|+.|++||+.++...
T Consensus 212 ~~~~~~~~~l~sgs~-------D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 212 SINSLNANMFISGSC-------DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EECSSSCCEEEEEET-------TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred EeecCCCCEEEEEEC-------CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 9987 8899999998 9999999998654444555567788999999999999999999999999999987654
Q ss_pred ccceeEee--cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee----eccCCceeEEEEcCCCCCEEEEee
Q 013475 360 DKFKRYES--HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI----KAYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 360 ~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
..+..... ......+++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .+|++|+
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs 363 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG-SALCTGS 363 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS-SEEEEEC
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC-CEEEEee
Confidence 32221111 112234789999999999999999999999999998888777 6799999999999999 7999999
Q ss_pred CCCcEEEcC
Q 013475 434 WNGDVSVYE 442 (442)
Q Consensus 434 ~dg~i~iwd 442 (442)
.||+|+|||
T Consensus 364 ~D~~i~iW~ 372 (380)
T 3iz6_a 364 WDKNLKIWA 372 (380)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999996
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-47 Score=343.28 Aligned_cols=298 Identities=17% Similarity=0.237 Sum_probs=247.8
Q ss_pred Ccceeccccccc-ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceee-eeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 135 GRLSTALCHHTK-AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR-VLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~-~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
..++.++.+|.+ .|++++|+|+ +++||+|+.|++|+|||+.+....... ...+|...|.+++|+|++++|++++.|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 457788999998 9999999999 999999999999999999665333233 3468999999999999999999999999
Q ss_pred cEEEEECCCCc--EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc---eEEEeccCCCCEeEEEEeeCC
Q 013475 213 SSRLVDVEKGI--ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK---VAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 213 ~v~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~ 286 (442)
+|++||+.++. ++..+. |...|.+++|+|++ ++|++|+.|+.|++||++++. .+..+..|...|.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99999998774 455665 88999999999996 899999999999999998763 456778899999999999999
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCccc-ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc----
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPL-SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK---- 361 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---- 361 (442)
++|++++. |+.|++||++..... ......+...+.+++|+|++++|++++.|+.|++|+.........
T Consensus 163 ~~l~s~s~-------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 163 ELLASASY-------DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp SCEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred CEEEEEeC-------CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 99999998 999999999876533 233445677899999999999999999999999999643221110
Q ss_pred --------ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce---------eeEeeeccCCceeEEEEcCC
Q 013475 362 --------FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE---------LERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 362 --------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~p~ 424 (442)
+..+.+ .+...|.+++|++++.+|++++.|+.|++|+...+. ......+|...|++++|+|+
T Consensus 236 ~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 236 GSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp ---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred ccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC
Confidence 111111 245678999999999999999999999999987542 11233578999999999999
Q ss_pred CCCEEEEeeCCCcEEEcC
Q 013475 425 LPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 425 ~~~~l~s~~~dg~i~iwd 442 (442)
++.+|++|+.||.|+|||
T Consensus 315 ~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 315 EPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp STTEEEEEETTSCEEEEE
T ss_pred CceEEEEcCCCCcEEEEE
Confidence 866999999999999996
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=341.55 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=234.5
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc---------CCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS---------RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.|...|.+++|+|| |++|++++ |+++++||... ...........|...|.+++|++++ .|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 46778999999999 89998887 77888887321 0111112222367889999999985 6889999999
Q ss_pred EEEEECCCCcEEEee-----eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC-
Q 013475 214 SRLVDVEKGIETQSF-----REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK- 287 (442)
Q Consensus 214 v~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~- 287 (442)
|+|||+++++.+..+ .|...|++++|+|++ ++|++|+.|+.|++||+++++.+..+.+|...|.+++|++++.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 999999998765433 288999999999996 8999999999999999999999999999999999999999885
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
+|++++. |+.|++||+++++....+.. .+...+.++.|+|++ .++++++.|+.|++||+++...+ ..+
T Consensus 184 ~l~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~---~~~ 253 (344)
T 4gqb_B 184 VFLSCSE-------DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV---LSS 253 (344)
T ss_dssp EEEEEET-------TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC---EEE
T ss_pred ceeeecc-------ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE---EEE
Confidence 7888988 99999999999887766543 345568899999965 57788999999999999887654 444
Q ss_pred eecccccCcEEEEEccCC-CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 366 ESHGVSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+| ...|++++|+|+| ++|++|+.||+|+|||+.+++++ .+.+|.+.|++++|+|++..+|+++|.||+|++|+
T Consensus 254 ~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 254 AVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp ECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred cCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 444 4679999999998 68999999999999999988765 57899999999999999877889999999999995
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-45 Score=330.92 Aligned_cols=290 Identities=18% Similarity=0.258 Sum_probs=251.6
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc---ceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ---KLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
..+..+|.+|.+.|++++|+|+++++|++|+.|++|++|++..... ..+..+.+|...|.+++|++++++|++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 4566789999999999999998568999999999999999864332 3567788999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC-----
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN----- 285 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----- 285 (442)
++|++||+.+++.+..+. |...|.+++|++++ .+|++|+.|+.|++||++ ++.+..+.+|...|.++.|+|.
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 999999999999998887 89999999999986 899999999999999996 5677888999999999999985
Q ss_pred -CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccccee
Q 013475 286 -GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKR 364 (442)
Q Consensus 286 -~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 364 (442)
+..|++++. |+.|++||+++...... ...+...+.+++|+|++++|++++.|+.|++||+....... .
T Consensus 165 ~~~~l~s~~~-------d~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~---~ 233 (319)
T 3frx_A 165 DSVTIISAGN-------DKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY---T 233 (319)
T ss_dssp -CCEEEEEET-------TSCEEEEETTTTEEEEE-ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---E
T ss_pred CccEEEEEeC-------CCEEEEEECCcchhhee-ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---E
Confidence 458999998 99999999998765443 34567789999999999999999999999999998875542 2
Q ss_pred EeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee--------ccCCceeEEEEcCCCCCEEEEeeCCC
Q 013475 365 YESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK--------AYEQACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 365 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
+.. ...+.+++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+++|+|++ ++|++|+.||
T Consensus 234 ~~~---~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~Dg 308 (319)
T 3frx_A 234 LSA---QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTDN 308 (319)
T ss_dssp EEC---CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETTS
T ss_pred ecC---CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecCc
Confidence 222 35689999999999999988654 9999999887776654 345679999999999 7999999999
Q ss_pred cEEEcC
Q 013475 437 DVSVYE 442 (442)
Q Consensus 437 ~i~iwd 442 (442)
.|+|||
T Consensus 309 ~i~vWd 314 (319)
T 3frx_A 309 VIRVWQ 314 (319)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999997
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-45 Score=336.39 Aligned_cols=285 Identities=16% Similarity=0.236 Sum_probs=233.0
Q ss_pred cccccceEEEEeeCCCCCEEEEecC------CCcEEEEEcccCC--cceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGM------DQSICIWNVWSRD--QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~------dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.+|++.|++++|+|| |++|++|+. |+.|++|+..++. ........+|...|.+++|+|++. +++++.||+
T Consensus 39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 479999999999999 999999997 7789999875442 123334456899999999999975 556788999
Q ss_pred EEEEECCCCcEEEe-----eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC-
Q 013475 214 SRLVDVEKGIETQS-----FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK- 287 (442)
Q Consensus 214 v~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~- 287 (442)
|+|||+.+++.... ..|...|++++|+|++ .+|++|+.|+.|++||+++++.+..+..|...|.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 99999998865432 2378899999999996 8999999999999999999999999999999999999999875
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
++++++. |+.|++||+++++....... .+...+.+++|+|++ .+|++++.|+.|++||+.+.... ..+
T Consensus 196 ~~~s~~~-------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~---~~~ 265 (357)
T 4g56_B 196 IFLSCGE-------DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA---QTS 265 (357)
T ss_dssp CEEEEET-------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC---EEE
T ss_pred eeeeecc-------CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe---EEE
Confidence 7788887 99999999998876655443 455678999999985 57788999999999999887554 334
Q ss_pred eecccccCcEEEEEccCC-CEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 366 ESHGVSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.. +...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|++++|+|..+.+|+|++.||+|++||
T Consensus 266 ~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 266 AV--HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ec--cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 33 44679999999987 68999999999999999999887665 79999999999994337999999999999996
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.9e-45 Score=355.98 Aligned_cols=293 Identities=18% Similarity=0.261 Sum_probs=247.7
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
+.....+.+|.+.|++++|+|++..+|++|+.|++|++||. ...++...+.+|...|++++|+|++++|++++.|++|
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~--~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG--PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET--TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC--CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence 45567789999999999999994347999999999999998 4457788899999999999999999999999999999
Q ss_pred EEEECCCCcEEEee--------eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE------------------
Q 013475 215 RLVDVEKGIETQSF--------REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH------------------ 268 (442)
Q Consensus 215 ~vwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------ 268 (442)
++||+.+++.+..+ .|...|.+++|+|++ .+|++++.|++|++||+++++.+.
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 99999999988877 478899999999996 899999999999999998876543
Q ss_pred -------------------------EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee---
Q 013475 269 -------------------------EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV--- 320 (442)
Q Consensus 269 -------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--- 320 (442)
.+.+|...|.+++|+|+|++|++++. |+.|++||+.++.......
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~-------D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA-------EGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTTCCEEECSSCSC
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceeeecccCC
Confidence 33578889999999999999999998 9999999987653221100
Q ss_pred ------------------------------------------------------------------------------cc
Q 013475 321 ------------------------------------------------------------------------------YV 322 (442)
Q Consensus 321 ------------------------------------------------------------------------------~~ 322 (442)
..
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~ 446 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP 446 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee
Confidence 00
Q ss_pred ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
+...+.+++|+|+++++++++.|+.|++|++...... .... ..+...|.+++|+|+|++|++++.|++|++||+.+
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~-~~~~---~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS-EVKT---IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE-EEEE---EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee-eeec---cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 1133568899999999999999999999998764321 1111 34557799999999999999999999999999987
Q ss_pred -ceeeEe--eeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 403 -SELERK--IKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 403 -~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++++.. +.+|...|.+++|+|++ ++|++++.|++|+|||
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWN 564 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred CCceeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEEE
Confidence 666554 34599999999999999 7999999999999996
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-44 Score=327.34 Aligned_cols=290 Identities=18% Similarity=0.264 Sum_probs=241.8
Q ss_pred CCcceecccccccceEEEEe-----eC-CCCCEEEEecCCCcEEEEEcccCC-----cceeeeeccCCCceeEEEeCCCC
Q 013475 134 PGRLSTALCHHTKAVNSINW-----SP-THAHLLASAGMDQSICIWNVWSRD-----QKLARVLNFHSAAVNDVKWSQQG 202 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~-----s~-~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~ 202 (442)
..++...|.+|.+.|++++| ++ + +++|++|+.|++|+|||+.... ......+.+|...|.+++|++++
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d-~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENED-SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCC-CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCC-CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 34567889999999999999 77 6 8999999999999999996442 24567788999999999999999
Q ss_pred CEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec---cCCCCEe
Q 013475 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI---QSLGPIL 278 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~ 278 (442)
.+|++++.|++|++||+++++.+..+. |...|.+++|+|++ .+|++++.|+.|++||+... ...... .|...|.
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 999999999999999999999998887 89999999999996 89999999999999999743 333333 6788999
Q ss_pred EEEEeeCC----------CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeE
Q 013475 279 DVEFTING----------KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYI 348 (442)
Q Consensus 279 ~~~~~~~~----------~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 348 (442)
+++|+|++ .+|++++. |+.|++||... . .......+...+.+++|+|++++|++++.|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~-~-~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v 237 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGW-------DGRLKVWNTNF-Q-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEET-------TSEEEEEETTT-E-EEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred eeeeccccccccccCCCCCEEEEEcC-------CCEEEEEcCCC-c-eeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence 99999987 78999998 99999999542 2 223344567789999999999999999999999
Q ss_pred EEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeE--eee-----------ccCCc
Q 013475 349 AIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELER--KIK-----------AYEQA 415 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~ 415 (442)
++||+....... ..+. +...+.+++|+|++.+|+++ .|+.|++||+.+++... .+. +|...
T Consensus 238 ~iwd~~~~~~~~--~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
T 2xzm_R 238 LIWDILNLTYPQ--REFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311 (343)
T ss_dssp EEEESSCCSSCS--EEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred EEEECCCCcccc--eeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence 999995433221 1221 22458999999999888765 47789999998766543 333 67788
Q ss_pred eeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 416 CIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|.+++|+|++ .+|++|+.||.|++||
T Consensus 312 v~~~~~sp~g-~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 312 CTSLAWNALG-KKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEEEECSSS-CCEEEEETTSEEEEEE
T ss_pred eEEEEECCCC-CeEEEecCCceEEEEE
Confidence 9999999999 7999999999999996
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-44 Score=325.11 Aligned_cols=294 Identities=14% Similarity=0.124 Sum_probs=235.7
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee-cc-CCCceeEEEeCCCCCEEEEEecCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL-NF-HSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
.+++.+|.+|.+.|++++|+++ +|++|+.|++|+|||+..+.......+ .+ |...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567889999999999999976 899999999999999966544555555 44 999999999999999999999999
Q ss_pred cEEEEECCC-------CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----CceEEEeccCCCCEeEE
Q 013475 213 SSRLVDVEK-------GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----GKVAHEYIQSLGPILDV 280 (442)
Q Consensus 213 ~v~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~ 280 (442)
+|++||++. .+.+..+. |...|.+++|+|++ .+|++|+.|+.|++||++. .+.+..+.+|...|.++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 999999853 34455565 88999999999996 8999999999999999953 24677889999999999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeeccccceeeeEEecCC--CCeeEEEeCCCeEEEeeCCCCc
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPF--DPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
+|+|++.+|++++. |++|++||...+. ........|...+.++.|+|+ +.++++++.|+.|++|++....
T Consensus 160 ~~~p~~~~l~s~s~-------D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 160 IWHPSEALLASSSY-------DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp EECSSSSEEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred EECCCCCEEEEEcC-------CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 99999999999998 9999999987653 222334456778999999998 6789999999999999986542
Q ss_pred ccc-----cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce--eeEe-eeccCC-ceeEEEEcC--CCC
Q 013475 358 RLD-----KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE--LERK-IKAYEQ-ACIDVAFHP--ILP 426 (442)
Q Consensus 358 ~~~-----~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~~~~~p--~~~ 426 (442)
... ....+. ..+...|.+++|++++ +|++++.||.|+|||..+++ .+.. +.+|.. .|.+++|+| ++
T Consensus 233 ~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~- 309 (330)
T 2hes_X 233 EDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK- 309 (330)
T ss_dssp TTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------
T ss_pred ccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-
Confidence 110 011111 1255779999999665 89999999999999998774 3333 357876 899999999 55
Q ss_pred CEEEEeeCCCcEEEcC
Q 013475 427 NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 427 ~~l~s~~~dg~i~iwd 442 (442)
.+|++++.||.|+|||
T Consensus 310 ~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 310 TILATGGDDGIVNFWS 325 (330)
T ss_dssp CCEEEEETTSEEEEEE
T ss_pred eEEEEecCCCcEEEEE
Confidence 7999999999999996
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4e-44 Score=331.89 Aligned_cols=286 Identities=18% Similarity=0.264 Sum_probs=242.3
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCC------------------CceeEEEeCCCCCE
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHS------------------AAVNDVKWSQQGLF 204 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~------------------~~v~~l~~~~~~~~ 204 (442)
+|.+.|++++|+|+ |++|++|+ ++.++||++.++ ..+..+..|. ..|.+++|+|++++
T Consensus 62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 69999999999999 99999987 689999999554 4555554443 24999999999999
Q ss_pred EEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEe
Q 013475 205 VLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 283 (442)
|++++.|+.|++||+.+++.+..+. |...|.+++|+|++ .+|++++.|+.|++||+++++....+. +...+.+++|+
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 9999999999999999999988887 88999999999996 899999999999999999998877765 44789999999
Q ss_pred e-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee------ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC
Q 013475 284 I-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV------YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 284 ~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 356 (442)
| ++++|++++. |+.|++||++++..+.... ..+...+.+++|+|++.++++++.|+.|++||+...
T Consensus 216 ~~~~~~l~~~s~-------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 216 PGDGKYIAAGSL-------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp STTCCEEEEEET-------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred CCCCCEEEEEcC-------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9 8999999998 9999999999877655442 346678999999999999999999999999999764
Q ss_pred cccccc-------eeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcC------
Q 013475 357 FRLDKF-------KRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP------ 423 (442)
Q Consensus 357 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p------ 423 (442)
...... .......|...|.+++|++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p 368 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCC
Confidence 322110 1112224457799999999999999999999999999999999999999999999999986
Q ss_pred CCCCEEEEeeCCCcEEEcC
Q 013475 424 ILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iwd 442 (442)
++ .+|++|+.||+|+|||
T Consensus 369 ~~-~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 369 EY-NVFATGSGDCKARIWK 386 (393)
T ss_dssp TC-EEEEEEETTSEEEEEE
T ss_pred CC-CEEEEECCCCcEEECc
Confidence 55 6999999999999996
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-44 Score=351.80 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=256.2
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD--- 211 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--- 211 (442)
++....|.+|.+.|++++|+|+ |++||+|+.||+|+|||+.+........+.+|.+.|.+++|+|++++|++++.+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred cccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence 5677889999999999999999 999999999999999999665556667888999999999999999999998875
Q ss_pred -CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 212 -CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 212 -~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
+.|++|| .++....+. |...|.+++|+|++..+|++|+.|++|++||..+++.+..+.+|...|.+++|+|+|++|
T Consensus 128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE
Confidence 3677777 455555666 889999999999976679999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeec------cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccce
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVY------VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 363 (442)
++++. |++|++||+.+++.+..+.. .|...+.+++|+|++++|++++.|+.|++||+.+......+.
T Consensus 206 as~s~-------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 206 ASTGG-------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp EEEET-------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEC-------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 99998 99999999998876655432 577789999999999999999999999999998764432211
Q ss_pred --------------------------------------eEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 364 --------------------------------------RYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 364 --------------------------------------~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
......|...|.+++|+|+|++|++++.|+.|++||+.+++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 011124557799999999999999999999999999999888
Q ss_pred eEee-eccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 406 ERKI-KAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 406 ~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+ .+|...|.+++|++++ .|++++.|+.+++||
T Consensus 359 ~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 359 NRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVP 394 (611)
T ss_dssp EECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEEC
T ss_pred eeecccCCcceEEEEEECCCC--cEEEEEcCCceEEee
Confidence 7666 5789999999999875 788999999999996
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=319.71 Aligned_cols=289 Identities=18% Similarity=0.246 Sum_probs=256.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.....|.+|.+.|++++|+|+ +++|++|+.||.|+|||+.+ .+....+.+|...|.+++|++++++|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 344568999999999999999 99999999999999999954 577888999999999999999999999999999999
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCC-----CcEEEEECCCCc-----------eEEEeccCCC--CE
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTGK-----------VAHEYIQSLG--PI 277 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~i 277 (442)
+||+.+++.+..+.+...+.+++|+|++ .+|++++.+ +.|++||++... .+..+..+.. .+
T Consensus 100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEeecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 9999999999999999999999999996 888999888 999999997653 3344455555 89
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
.+++|++++++|++++. |+.|++||+++..........+...+.++.|+|++.+|++++.++.|++||+.+..
T Consensus 179 ~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK-------DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEEECGGGCEEEEEET-------TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred eEEEEcCCCCEEEEEcC-------CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 99999999999999998 99999999998444444455567789999999999999999999999999998875
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEecCCC--------------cEEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG--------------SIYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
.... +. +...+..++|+|+++++++++.++ .+++||+.+++.+..+.+|...|++++|+|
T Consensus 252 ~~~~---~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 252 VLKK---YE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp EEEE---EE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred eeee---ec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC
Confidence 5432 22 346688999999999999999888 899999999999999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEcC
Q 013475 424 ILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iwd 442 (442)
++ .+|++++.||.|+|||
T Consensus 326 ~~-~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 326 QG-TSYASGGEDGFIRLHH 343 (369)
T ss_dssp TS-SEEEEEETTSEEEEEE
T ss_pred CC-CEEEEEcCCCeEEEEE
Confidence 98 7999999999999996
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-42 Score=339.31 Aligned_cols=292 Identities=22% Similarity=0.348 Sum_probs=255.9
Q ss_pred CccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEE
Q 013475 127 HVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVL 206 (442)
Q Consensus 127 ~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 206 (442)
.+..|...++....+.+|.+.|++++|+|+ +++|++++.||.|++||+. ......+.+|...|.+++|+|++++|+
T Consensus 285 ~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~ 360 (577)
T 2ymu_A 285 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN---GQHLQTLTGHSSSVWGVAFSPDGQTIA 360 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT---SCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEeCCCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCC---CCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 344556677888899999999999999999 9999999999999999973 344566788999999999999999999
Q ss_pred EEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC
Q 013475 207 SCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
+++.|+.|++||. +++.+..+. |...|.+++|+|++ .+|++++.|+.|++||. +++.+..+..|...|.+++|+|+
T Consensus 361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp EEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT
T ss_pred EEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC
Confidence 9999999999996 556666666 88999999999996 88999999999999995 57788899999999999999999
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
+++|++++. |+.|++||... +.+ .....+...+.+++|+|++++|++++.|+.|++|+.... . +..+
T Consensus 438 ~~~l~~~~~-------d~~v~~w~~~~-~~~-~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~-~---~~~~ 504 (577)
T 2ymu_A 438 DQTIASASD-------DKTVKLWNRNG-QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-L---LQTL 504 (577)
T ss_dssp SSEEEEEET-------TSEEEEEETTS-CEE-EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC-E---EEEE
T ss_pred CCEEEEEcC-------CCEEEEEECCC-CEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-E---EEEE
Confidence 999999998 99999999754 333 334456778999999999999999999999999996542 2 2444
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+| ...|++++|+|+|++|++++.||.|+|||. +++++..+.+|.+.|++++|+||+ ++|+|++.||+|++||
T Consensus 505 ~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg-~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 505 TGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASSDKTVKLWN 577 (577)
T ss_dssp ECC--SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred eCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEeC
Confidence 444 467999999999999999999999999996 688899999999999999999999 7999999999999998
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.1e-42 Score=311.66 Aligned_cols=290 Identities=20% Similarity=0.230 Sum_probs=246.7
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---cceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
++..+|+||++.|++|+|+|+++++|+||+.||+|+|||+.+.. ......+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 45678999999999999999877899999999999999996543 245677889999999999999999999999999
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEeeCC--CE
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTING--KQ 288 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~ 288 (442)
.|++|+........... +...+..+.+++++ .+|++++.|+.+++||+..... ...+..|...+..++|++++ .+
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 99999999988877776 67788889999985 8899999999999999976654 34456788899999998764 56
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
+++++. |+.|++||+++.+.+... ..+...+.+++|+|++++|++++.|+.|++||+.....+. .+.
T Consensus 188 ~~s~~~-------d~~i~i~d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~---~~~-- 254 (340)
T 4aow_A 188 IVSCGW-------DKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY---TLD-- 254 (340)
T ss_dssp EEEEET-------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---EEE--
T ss_pred EEEEcC-------CCEEEEEECCCCceeeEe-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee---eec--
Confidence 788887 999999999988766544 3466789999999999999999999999999998865442 222
Q ss_pred ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee---------ccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK---------AYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
....+..+.|+|++.++ +++.|+.|+|||++++..+..+. +|...|++++|+|++ ++|++|+.||.|+
T Consensus 255 -~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 255 -GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVR 331 (340)
T ss_dssp -CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred -CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEE
Confidence 23568899999987655 55669999999999887766554 578899999999999 7999999999999
Q ss_pred EcC
Q 013475 440 VYE 442 (442)
Q Consensus 440 iwd 442 (442)
|||
T Consensus 332 iW~ 334 (340)
T 4aow_A 332 VWQ 334 (340)
T ss_dssp EEE
T ss_pred EEe
Confidence 997
No 20
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-43 Score=331.15 Aligned_cols=300 Identities=13% Similarity=0.161 Sum_probs=249.2
Q ss_pred cccCCcceecc-cccccceEEEEeeC-CCCCEEEEecCCCcEEEEEccc---CC-cceeeeeccCCCceeEEEeCCCCCE
Q 013475 131 SKIPGRLSTAL-CHHTKAVNSINWSP-THAHLLASAGMDQSICIWNVWS---RD-QKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 131 ~~~~~~~~~~l-~~h~~~V~~~~~s~-~~~~~l~s~~~dg~i~iwd~~~---~~-~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
|...++++..+ .+|.+.|++++|+| + +++|++|+.||+|+|||+.+ .. ......+ .|...|.+++|++++++
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA 125 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE
Confidence 45567888888 89999999999999 7 99999999999999999965 32 1223334 49999999999999999
Q ss_pred EEEEecCCcEEEEECC---CCcEEEeee-------------CCcceEEEE--EccCCCCEEEEeeCCCcEEEEECCCCce
Q 013475 205 VLSCGYDCSSRLVDVE---KGIETQSFR-------------EELAVRVVK--FHPENSNLFLSGGSKGLLRLWDIRTGKV 266 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 266 (442)
|++++.||.|++||++ +++....+. +...+.++. +++++ .+|++++.||.|++||+++++.
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCee
Confidence 9999999999999995 555544333 344566666 44664 8999999999999999999999
Q ss_pred EEEecc--CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEec----CCCCeeE
Q 013475 267 AHEYIQ--SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHH----PFDPYFV 340 (442)
Q Consensus 267 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ 340 (442)
+..+.. |...|.+++|+|++++|++++. |+.|++||++++..+..+...+...+.++.++ +++.+++
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTT-------RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEET-------TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcC-------CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 999988 8899999999999999999998 99999999999887777666677789999554 5678999
Q ss_pred EEeCCCeEEEeeCCCCccccccee---------------------EeecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 341 AQSNGNYIAIFSSTPPFRLDKFKR---------------------YESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~~~~~---------------------~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
+++.|+.|++||+.+......+.. +.+..+...|.+++|+ ++++|++|+.||.|++||
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 999999999999987764432220 1111255668899999 889999999999999999
Q ss_pred cCCceeeEeeec-------------------------------------cCCceeEEEEcCC--CCCEEEEeeCCCcEEE
Q 013475 400 CRSSELERKIKA-------------------------------------YEQACIDVAFHPI--LPNIIGSCSWNGDVSV 440 (442)
Q Consensus 400 ~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~p~--~~~~l~s~~~dg~i~i 440 (442)
+.+++....+.+ |...|++++|+++ + .+|++|+.||.|+|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-~~l~s~~~dG~I~i 435 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET-PLLVACDNSGLIGI 435 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS-EEEEEEETTSCEEE
T ss_pred CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc-eEEEEEcCCceEEE
Confidence 999888777765 7889999999988 5 69999999999999
Q ss_pred cC
Q 013475 441 YE 442 (442)
Q Consensus 441 wd 442 (442)
|+
T Consensus 436 w~ 437 (437)
T 3gre_A 436 FQ 437 (437)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.2e-42 Score=319.51 Aligned_cols=290 Identities=16% Similarity=0.179 Sum_probs=242.5
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCC
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDC 212 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~ 212 (442)
+.+....+.+|.+.|++++|+|++.++|++|+.||.|+|||+.+..........+|...|.+++|+| ++++|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 3566778899999999999999933999999999999999997654444444457999999999999 789999999999
Q ss_pred cEEEEECCCCcEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC-
Q 013475 213 SSRLVDVEKGIETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK- 287 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~- 287 (442)
.|++||+.+ ..+..+. +...|.+++|+|++ .+|++++.|+.|++||+ +++.+..+..|...|.+++|+|++.
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999996 4444443 34779999999996 89999999999999999 5778889999999999999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCC----cccceeeccccceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccccc
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSRE----VPLSKQVYVEAYTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLDKF 362 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 362 (442)
+|++++. |+.|++||+++. ..+... .+...+.++.|+| ++.+|++++.|+.|++||+........
T Consensus 219 ~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~- 288 (383)
T 3ei3_B 219 LMATSSV-------DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ- 288 (383)
T ss_dssp EEEEEET-------TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE-
T ss_pred EEEEEeC-------CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc-
Confidence 8999998 999999999973 333222 5677899999999 999999999999999999987665432
Q ss_pred eeEeeccc---------------ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec--cCCceeEEEEcCCC
Q 013475 363 KRYESHGV---------------SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA--YEQACIDVAFHPIL 425 (442)
Q Consensus 363 ~~~~~~~~---------------~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~ 425 (442)
+..+.. ...+..++|+|+|++ +|+.||.|+|||+.+++++..+.+ |...+..++|+|++
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 289 --IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp --EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred --cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 222211 123445677777777 788999999999999999999987 45677888999999
Q ss_pred CCEEEEeeCCCcEEEcC
Q 013475 426 PNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 426 ~~~l~s~~~dg~i~iwd 442 (442)
.+|++++ ||.|+|||
T Consensus 365 -~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 365 -DVLASGM-GFNILIWN 379 (383)
T ss_dssp -SEEEEEE-TTEEEEEE
T ss_pred -cEEEEec-CCcEEEEe
Confidence 7999997 99999996
No 22
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=317.24 Aligned_cols=297 Identities=11% Similarity=0.154 Sum_probs=246.2
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecC---CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC---CCEEEE
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGM---DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ---GLFVLS 207 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s 207 (442)
+....+.+++|.+.|++++|+|++..++++|+. ||.|+|||+.++.......+ +|...|.+++|+|+ +++|++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEE
Confidence 344556678999999999999994466677776 99999999976543333333 59999999999998 699999
Q ss_pred EecCCcEEEEECCCCc-EEEeee-CCcceEEEEE------ccCCCCEEEEeeCCCcEEEEECCCCc-eEEEeccCCC---
Q 013475 208 CGYDCSSRLVDVEKGI-ETQSFR-EELAVRVVKF------HPENSNLFLSGGSKGLLRLWDIRTGK-VAHEYIQSLG--- 275 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~--- 275 (442)
++.||.|++||+.+++ .+..+. |...|.++.| ++++ .+|++++.||.|++||+++++ .+..+..+.+
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 9999999999999987 777776 8899999965 5675 899999999999999999886 6777766544
Q ss_pred -CEeEEE----EeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC---CCCeeEEEeCCCe
Q 013475 276 -PILDVE----FTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP---FDPYFVAQSNGNY 347 (442)
Q Consensus 276 -~i~~~~----~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 347 (442)
.|.++. |++++++|++++. |+.|++||+++.+... ...+...+.++.|+| ++.++++++.++.
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYD-------NGDIKLFDLRNMALRW--ETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEET-------TSEEEEEETTTTEEEE--EEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred CceEEEEEEeccCCCCCEEEEEcc-------CCeEEEEECccCceee--ecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 788888 6789999999998 9999999999887633 345567899999999 9999999999999
Q ss_pred EEEeeCCCCcccccceeEeecccccCcEEEEEccCCC-EEEEecCCCcEEEEecCCc-------------------eeeE
Q 013475 348 IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVSGSSDGSIYFYNCRSS-------------------ELER 407 (442)
Q Consensus 348 i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~iwd~~~~-------------------~~~~ 407 (442)
|++||++.......+.......+...+.+++|+|+++ +|++|+.||.|++||+.++ +.+.
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 9999998766554443333335567899999999998 8999999999999999753 4677
Q ss_pred eeeccCCceeEEEEcCCCCCEEE-EeeCCCcEEEcC
Q 013475 408 KIKAYEQACIDVAFHPILPNIIG-SCSWNGDVSVYE 442 (442)
Q Consensus 408 ~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd 442 (442)
.+.+|...|++++|+|++ .+|+ +++.||.|+|||
T Consensus 316 ~~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEE
T ss_pred ccccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEE
Confidence 888999999999999999 5666 899999999996
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-41 Score=306.31 Aligned_cols=282 Identities=12% Similarity=0.199 Sum_probs=246.2
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-ceeeeec--cCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-KLARVLN--FHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
..+|.+.|++++|+|+ +++|++++ ||.|++||+.+... .....+. .|...|.+++|+|++++|++++.|+.|++|
T Consensus 47 ~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3479999999999999 99999998 99999999965432 2223333 689999999999999999999999999999
Q ss_pred ECCCCc--EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 218 DVEKGI--ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 218 d~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
|+.+++ ....+. +...+.+++|+|++ .+|++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 999887 444444 78889999999985 89999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
|+.|++||+++++.+... .+...+.++.|+|+++++++++.++.|++|++...... ....+...+
T Consensus 204 -------dg~i~~~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~------~~~~~~~~v 268 (337)
T 1gxr_A 204 -------DNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY------QLHLHESCV 268 (337)
T ss_dssp -------TSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE------EECCCSSCE
T ss_pred -------CCcEEEEECCCCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE------EEcCCccce
Confidence 999999999988766554 34567899999999999999999999999999876432 233455779
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++ .+|++++.||.|++||
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD-KYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS-CEEEEEETTSCEEEEE
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC-CEEEEecCCCeEEEEE
Confidence 99999999999999999999999999998877544 578899999999998 7999999999999996
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.6e-42 Score=339.84 Aligned_cols=290 Identities=21% Similarity=0.245 Sum_probs=246.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---cceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
+....+++|++.|++|+|+++++++|+||+.||+|+||++.... ......+.+|...|.+++|++++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 44557899999999999999867899999999999999986543 234567889999999999999999999999999
Q ss_pred cEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCCCEeEEEEeeCC--
Q 013475 213 SSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLGPILDVEFTING-- 286 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~-- 286 (442)
+|+|||+.+++....+. |...|.+++|+|++ .+|++|+.|++|++||+......... .+|...|.+++|++++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999999999988887 89999999999996 88999999999999998655433322 4678899999999987
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
..|++++. |+.|++||+++.+.... ...|...+.+++|+|++.+|++++.|+.|++||+.+...+..+
T Consensus 532 ~~l~s~s~-------d~~v~vwd~~~~~~~~~-~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---- 599 (694)
T 3dm0_A 532 PTIVSASW-------DKTVKVWNLSNCKLRST-LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---- 599 (694)
T ss_dssp CEEEEEET-------TSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC----
T ss_pred ceEEEEeC-------CCeEEEEECCCCcEEEE-EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe----
Confidence 57999998 99999999998765543 3456778999999999999999999999999999887554322
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC-------------------CceeEEEEcCCCCC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE-------------------QACIDVAFHPILPN 427 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~~p~~~~ 427 (442)
.....+.+++|+|++.+|++++ ++.|+|||+.+++.+..+..+. ..+++++|+|++ .
T Consensus 600 --~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~ 675 (694)
T 3dm0_A 600 --EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-S 675 (694)
T ss_dssp --BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-S
T ss_pred --cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-C
Confidence 2235688999999998888776 4569999999998887775331 137899999999 7
Q ss_pred EEEEeeCCCcEEEcC
Q 013475 428 IIGSCSWNGDVSVYE 442 (442)
Q Consensus 428 ~l~s~~~dg~i~iwd 442 (442)
+|++|+.||.|+|||
T Consensus 676 ~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 676 TLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCeEEEEe
Confidence 999999999999996
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.4e-42 Score=305.81 Aligned_cols=249 Identities=18% Similarity=0.246 Sum_probs=223.9
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
....++.+|.+.|++++|+|++++|++++.||+|++||+++++.+..+. |...|.+++|++++ ++|++|+.|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEE
Confidence 4567788999999999999999999999999999999999999998888 78899999999996 899999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC-CCCe
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP-FDPY 338 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (442)
|+++++.+..+.+|...|.+++|+|++.+|++++. |++|++||++++..+......+...+.+++|+| ++.+
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-------CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 99999999999999999999999999999999998 999999999987666666667788899999999 5789
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc--CCCEEEEecCCCcEEEEecCCceeeEeeeccCCce
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL--DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQAC 416 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v 416 (442)
|++++.|+.|++||+........ +. ..+...+..+.|++ ++.+|++|+.||.|++||+++++++..+.+|...|
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFT---LT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEE---EE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred EEEEeCCCeEEEEECCCCCccce---ec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence 99999999999999976544321 11 12334577788876 78899999999999999999999999999999999
Q ss_pred eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 417 IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 417 ~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+++|+|++ .+|++++.||.|+|||
T Consensus 232 ~~~~~~p~~-~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 232 SFAVFHPTL-PIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEEEECSSS-SEEEEEETTSCEEEEE
T ss_pred EEEEECCCC-CEEEEEcCCCeEEEEE
Confidence 999999998 7999999999999997
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-42 Score=326.51 Aligned_cols=296 Identities=13% Similarity=0.173 Sum_probs=238.2
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSS 214 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v 214 (442)
+......+|...|+||+|+|.++++||+|+.||.|+|||+.+.+......+.+|.+.|++|+|+| ++++|++++.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 44556778999999999999768899999999999999997776666777788999999999998 78999999999999
Q ss_pred EEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC-EEE
Q 013475 215 RLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK-QFV 290 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 290 (442)
++||++++....... +...+.+++|++++ .+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 999998765544433 34457899999996 899999999999999986 456678889999999999999876 677
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCccccee--eccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe-e
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQ--VYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE-S 367 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~-~ 367 (442)
+++. |+.|++||+++....... ...|...|.+++|+|++.+|++++.|+.|++||+........+.... .
T Consensus 268 s~s~-------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 340 (435)
T 4e54_B 268 TASV-------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340 (435)
T ss_dssp EEET-------TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC
T ss_pred EecC-------cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc
Confidence 8887 999999999886654433 23567789999999999999999999999999998765442211100 0
Q ss_pred cccccCcEEEEEccCCCEEEEec------------CCCcEEEEecCCceeeEeee-ccCCceeEE-EEcCCCCCEEEEee
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGS------------SDGSIYFYNCRSSELERKIK-AYEQACIDV-AFHPILPNIIGSCS 433 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~~p~~~~~l~s~~ 433 (442)
......+..+.|++++.+++++. .++.|++||..+++++..+. +|...|.++ +|+|++ .+|++|+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg~ 419 (435)
T 4e54_B 341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASAM 419 (435)
T ss_dssp CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEEC
T ss_pred ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEEc
Confidence 11112234556777777666654 34579999999999888765 677888887 699999 7888876
Q ss_pred CCCcEEEcC
Q 013475 434 WNGDVSVYE 442 (442)
Q Consensus 434 ~dg~i~iwd 442 (442)
|+.|+|||
T Consensus 420 -d~~i~iW~ 427 (435)
T 4e54_B 420 -GYHILIWS 427 (435)
T ss_dssp -SSEEEECC
T ss_pred -CCcEEEEE
Confidence 88999997
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-41 Score=328.61 Aligned_cols=294 Identities=21% Similarity=0.336 Sum_probs=256.7
Q ss_pred cCccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE
Q 013475 126 SHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV 205 (442)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 205 (442)
..+..|...++.+..+.+|...|++++|+|+ +++|++++.|+.|++||. .......+.+|...|.+++|+|++++|
T Consensus 243 ~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l 318 (577)
T 2ymu_A 243 KTVKLWNRNGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDGQTI 318 (577)
T ss_dssp SCEEEECTTSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET---TSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CEEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeC---CCcEEEEEecCCCCeEEEEECCCCCEE
Confidence 3345556677888899999999999999999 999999999999999996 346677888999999999999999999
Q ss_pred EEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC
Q 013475 206 LSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 206 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
++++.|+.|++||+..........|...+.+++|+|++ .+|++++.|+.|++||. +++.+..+..|...|.+++|+|+
T Consensus 319 ~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 396 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 396 (577)
T ss_dssp EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCC
Confidence 99999999999998766554444488999999999996 89999999999999995 67788899999999999999999
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
+++|++++. |+.|++||... +.+ .....+...+.+++|+|+++++++++.|+.|++|+..... +..+
T Consensus 397 g~~l~~~~~-------d~~v~~~~~~~-~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~----~~~~ 463 (577)
T 2ymu_A 397 GQTIASASD-------DKTVKLWNRNG-QLL-QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL----LQTL 463 (577)
T ss_dssp SSCEEEEET-------TSEEEEECTTC-CEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE----EEEE
T ss_pred CCEEEEEeC-------CCEEEEEeCCC-CEE-EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE----EEEE
Confidence 999999998 99999999643 333 3334566789999999999999999999999999975431 2334
Q ss_pred eecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 366 ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 366 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.. +...+.+++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++ ++|++++.||.|+|||
T Consensus 464 ~~--~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 464 TG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN 536 (577)
T ss_dssp EC--CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred cC--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEe
Confidence 43 4467999999999999999999999999995 688899999999999999999999 7999999999999997
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-42 Score=318.91 Aligned_cols=292 Identities=14% Similarity=0.193 Sum_probs=251.1
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC----cceeeeeccCCCceeEEEeCCC----C---CE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD----QKLARVLNFHSAAVNDVKWSQQ----G---LF 204 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~~~~----~---~~ 204 (442)
.....+.+|.+.|++++|+| ++|++|+.||.|+|||+.+.. ......+.+|...|.+++|+++ + ++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 45677889999999999987 599999999999999997654 2367777889999999999999 9 99
Q ss_pred EEEEecCCcEEEEECCCCcE-----EEeee-C-----CcceEEEEEc----cCCCCE-EEEeeCCCcEEEEECCC-----
Q 013475 205 VLSCGYDCSSRLVDVEKGIE-----TQSFR-E-----ELAVRVVKFH----PENSNL-FLSGGSKGLLRLWDIRT----- 263 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~----- 263 (442)
|++++.|+.|++||+.+++. ...+. + ...|.+++|+ |++ .+ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccc
Confidence 99999999999999999886 66666 5 4899999999 986 77 99999999999999988
Q ss_pred -CceEE-----Ee-------ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc--c---cc
Q 013475 264 -GKVAH-----EY-------IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV--E---AY 325 (442)
Q Consensus 264 -~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~---~~ 325 (442)
++.+. .+ ..|...|.+++|++++ +|++++. |+.|++||+++.+.+..+... + ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-------NGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-------TSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-------CCcEEEEECCCCceeEEEeccccccccCC
Confidence 65555 66 4478899999999999 9999998 999999999988766555431 4 67
Q ss_pred eeeeEEecCCCCeeEEEeCC---CeEEEeeCCCCcccccceeEeec-----------ccccCcEEEEEccCCCEEEEecC
Q 013475 326 TCPCVRHHPFDPYFVAQSNG---NYIAIFSSTPPFRLDKFKRYESH-----------GVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
.+.++.|+|++.+|++++.+ +.|++||+....... .+... .+...+.+++|+|++++|++++.
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 89999999999999999999 999999998775442 33320 04577999999999999999999
Q ss_pred CCcEEEEecCCceeeEeee------cc---------------CCceeEEEEcCCCC---------CEEEEeeCCCcEEEc
Q 013475 392 DGSIYFYNCRSSELERKIK------AY---------------EQACIDVAFHPILP---------NIIGSCSWNGDVSVY 441 (442)
Q Consensus 392 dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~~p~~~---------~~l~s~~~dg~i~iw 441 (442)
||.|+|||+.+++++..+. +| ...|++++|+|++. .+|++++.||.|+||
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 9999999999999999999 88 89999999999972 499999999999999
Q ss_pred C
Q 013475 442 E 442 (442)
Q Consensus 442 d 442 (442)
|
T Consensus 392 ~ 392 (397)
T 1sq9_A 392 R 392 (397)
T ss_dssp E
T ss_pred E
Confidence 6
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-41 Score=312.46 Aligned_cols=289 Identities=16% Similarity=0.245 Sum_probs=242.1
Q ss_pred cccccccceEEEEeeCC---CCCEEEEecCCCcEEEEEcccCCcceeeeecc-----CCCceeEEEeCCC----CCEEEE
Q 013475 140 ALCHHTKAVNSINWSPT---HAHLLASAGMDQSICIWNVWSRDQKLARVLNF-----HSAAVNDVKWSQQ----GLFVLS 207 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----h~~~v~~l~~~~~----~~~l~s 207 (442)
...+|.+.|++++|+|+ +..++++++.++.|+|||+.+. ..+..+.. |...|++++|+++ +.+|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 44589999999999983 3556666667789999999644 33333332 6688999999998 679999
Q ss_pred EecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCCCEeEEEEe
Q 013475 208 CGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLGPILDVEFT 283 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~ 283 (442)
++.||.|++||+.+++.+..+. |...|.+++|+|++..+|++++.||.|++||+++++.+..+ ..|...|.+++|+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999999999999888 89999999999933589999999999999999999988888 6899999999999
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec---------------------------cccceeeeEEecCCC
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY---------------------------VEAYTCPCVRHHPFD 336 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~ 336 (442)
+++++|++++. |+.|++||+++++....... .+...+.++.|+ +
T Consensus 171 ~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 171 LLGEKIMSCGM-------DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp TTSSEEEEEET-------TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred CCCCEEEEecC-------CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 99999999998 99999999998654432221 166788999998 7
Q ss_pred CeeEEEeCCCeEEEeeCCCCccc-----------ccceeEeecccccCcEEEEEccC--CCEEEEecCCCcEEEEecCCc
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRL-----------DKFKRYESHGVSGFPIKCSFSLD--GEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~iwd~~~~ 403 (442)
.++++++.++.|++||+...... ..+..+. .+...+.+++|+|+ +++|++|+.||.|++||+.++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 79999999999999998775431 1123333 33466889999999 999999999999999999987
Q ss_pred ee----eEeeecc--CCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 404 EL----ERKIKAY--EQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 404 ~~----~~~~~~~--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+. ...+..| ...|++++|+|++ .+|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 320 DPHKAKCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWD 363 (366)
T ss_dssp SGGGCEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred CCccccceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEE
Confidence 54 3477777 7899999999998 7999999999999997
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.2e-41 Score=310.33 Aligned_cols=286 Identities=11% Similarity=0.153 Sum_probs=240.7
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
+..|.+.|++++|+|+ +++|++++.|+.|+|||+.+........+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 4559999999999999 999999999999999999766444788888999999999999999999999999999999999
Q ss_pred CCcEEEee---eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce---EEE-eccCCCCEeEEEEeeCCCEEEecc
Q 013475 221 KGIETQSF---REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV---AHE-YIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 221 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+++....+ .+...|.+++|+|++ .+|++++.|+.|++||++.++. ... ...|...|.+++|++++++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 98755443 378899999999996 8999999999999999988762 333 366789999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCC------------------CCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 294 DVSGSNMSENSIVVWDVS------------------REVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
. |+.|++||++ .+..+.. ...+...+.++.|+|++.++++++.|+.|++||+..
T Consensus 162 ~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 162 C-------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp T-------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred C-------CCCEEEEEcccccccccccccccccccchhhheEe-cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 8 9999999975 2333322 235567899999999999999999999999999987
Q ss_pred CcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC--cee--e-------------------------
Q 013475 356 PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS--SEL--E------------------------- 406 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~--~~~--~------------------------- 406 (442)
.... ..+.. +...+.+++|+|++++|++| .||.|++|++.+ ++. +
T Consensus 234 ~~~~---~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
T 1k8k_C 234 KMAV---ATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 307 (372)
T ss_dssp TTEE---EEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred Ccee---EEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence 6544 33333 34578999999999999988 899999999987 421 0
Q ss_pred -----------Eee-eccCCceeEEEEcCCCC---CEEEEeeCCCcEEEcC
Q 013475 407 -----------RKI-KAYEQACIDVAFHPILP---NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 407 -----------~~~-~~~~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd 442 (442)
..+ .+|...|++++|++..+ .+|++++.||.|+|||
T Consensus 308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 233 48999999999875543 6999999999999996
No 31
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=309.37 Aligned_cols=299 Identities=14% Similarity=0.134 Sum_probs=248.3
Q ss_pred CcceecccccccceEEEEeeC-CCCCEEEEecCCCcEEEEEcccCCcceeeee-----------ccCCCceeEEEeCC-C
Q 013475 135 GRLSTALCHHTKAVNSINWSP-THAHLLASAGMDQSICIWNVWSRDQKLARVL-----------NFHSAAVNDVKWSQ-Q 201 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~h~~~v~~l~~~~-~ 201 (442)
.+....+.+|.+.|++++|+| + +++|++|+.||.|+|||+.+......... .+|...|.+++|+| +
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred CcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 456677889999999999999 7 99999999999999999976543322221 25999999999999 7
Q ss_pred CCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCC--CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeE
Q 013475 202 GLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPEN--SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279 (442)
Q Consensus 202 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 279 (442)
+.+|++++.||.|++||+.+++....+.+...+.++.|++.+ ..++++++.||.|++||+++++.+..+..|...|.+
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred CcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 889999999999999999999999999999999999999864 248999999999999999999999999999999999
Q ss_pred EEEeeCCC-EEEeccCCCCCcCCCCeEEEEeCCCCcccceee---------------ccccceeeeEEecCCCCeeEEEe
Q 013475 280 VEFTINGK-QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV---------------YVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 280 ~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
++|+|++. .|++++. |+.|++||++......... ..+...+.+++|+|++.++++++
T Consensus 192 ~~~~~~~~~ll~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 192 VSWSPRYDYILATASA-------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp EEECSSCTTEEEEEET-------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCcEEEEEcC-------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 99999998 5888888 9999999998765222221 35667899999999999999999
Q ss_pred CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 344 NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 344 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
.|+.|++||+.+..................+........+..+++++.++.|++||+.+++++..+.+|...|++++|+|
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 99999999999876543222111111111122222233456677778899999999999999999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEcC
Q 013475 424 ILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iwd 442 (442)
++ .+|++++.||.|+|||
T Consensus 345 ~~-~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 345 NF-QELYSGSRDCNILAWV 362 (408)
T ss_dssp TT-TEEEEEETTSCEEEEE
T ss_pred CC-CEEEEECCCCeEEEEe
Confidence 98 7999999999999996
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-40 Score=296.36 Aligned_cols=282 Identities=17% Similarity=0.209 Sum_probs=245.7
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
+.++.+++.+|.+.|++++| ++ +++|++|+.||.|++||+. .......+..|...|.+++|+|++++|++++.|+.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKD--DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEES--SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECC--CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 35778899999999999999 88 8899999999999999994 45677778889999999999999999999999999
Q ss_pred EEEEECCCC---cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEee-CCCE
Q 013475 214 SRLVDVEKG---IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI-NGKQ 288 (442)
Q Consensus 214 v~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 288 (442)
|++|++... +.+..+. |...|.++.|. ..+|++++.||.|++|| .++.+..+..|...|.++.|++ ++++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 999998765 4455555 88999999993 37899999999999999 6778888899999999999999 9999
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
+++++. |+.|++||. ..........+...+.++.|++++. +++++.++.|++||+...... ..+.
T Consensus 158 l~~~~~-------d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~---~~~~-- 222 (313)
T 3odt_A 158 FLTASA-------DKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL---RTYE-- 222 (313)
T ss_dssp EEEEET-------TSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE---EEEE--
T ss_pred EEEEEC-------CCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh---hhhh--
Confidence 999998 999999993 3344444445777899999999998 999999999999999877544 3333
Q ss_pred ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+...+.+++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|++ . +++++.||.|+|||
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFS 293 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEE
T ss_pred cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEe
Confidence 344779999999999 68899999999999999999999999999999999999998 4 66788999999996
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=317.75 Aligned_cols=286 Identities=14% Similarity=0.197 Sum_probs=244.4
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC--CcceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEEEC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR--DQKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~ 219 (442)
.|...|++++|+|+ +++|++|+.||.|++||+... .......+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 58999999999999 899999999999999999652 13577788889999999999998 899999999999999999
Q ss_pred CCCc------EEEee----eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC------CCCEeEEEEe
Q 013475 220 EKGI------ETQSF----REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS------LGPILDVEFT 283 (442)
Q Consensus 220 ~~~~------~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~ 283 (442)
.+++ ....+ .|...|.+++|+|++..+|++++.||.|++||+++++.+..+..+ ...|.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 9886 33333 378899999999996689999999999999999999998888776 7899999999
Q ss_pred eCC-CEEEeccCCCCCcCCCC---eEEEEeCCCCcccceeec-cccceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCc
Q 013475 284 ING-KQFVSSSDVSGSNMSEN---SIVVWDVSREVPLSKQVY-VEAYTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 284 ~~~-~~l~~~~~~~~~~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
|++ .++++++. |+ .|++||+++......... .+...+.++.|+| ++.+|++++.|+.|++||+.+..
T Consensus 224 ~~~~~~l~~~~~-------d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 224 PKNSTRVATATG-------SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp SSCTTEEEEEEC-------CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred CCCCCEEEEEEC-------CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence 997 68888887 88 999999998644334444 6778899999999 89999999999999999998875
Q ss_pred ccccceeEeecccccCcEEEEEccCC-CEEEEecCCCcEEEEecCCceeeEeeec-------------------------
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELERKIKA------------------------- 411 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------------------- 411 (442)
.+ ..+.. +...+.+++|+|++ .+|++++.||.|+|||+.+++.......
T Consensus 297 ~~---~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 297 QL---SQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp EE---EEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred cc---eeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 44 33333 44678999999999 8999999999999999987654332211
Q ss_pred ----------cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 412 ----------YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 412 ----------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|...+.+++|+|+| ++|++++.||.|+|||
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 372 SVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGKGVSITN 411 (416)
T ss_dssp CSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSSCBCCBC
T ss_pred ccccccCCccccCCccceEEeeCC-eEEEEeCCCCeEEEEE
Confidence 56778899999999 8999999999999997
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=304.25 Aligned_cols=297 Identities=16% Similarity=0.215 Sum_probs=247.5
Q ss_pred cCCcceecccccccceEEEEeeCCC--CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec
Q 013475 133 IPGRLSTALCHHTKAVNSINWSPTH--AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY 210 (442)
Q Consensus 133 ~~~~~~~~l~~h~~~V~~~~~s~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 210 (442)
.+.+.+..+.+|.+.|++++|+|++ |++|++|+.||.|+|||+.+........+.+|...|++++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 4567788999999999999999995 59999999999999999976445555788889999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEeeeCCcceEEEEE--ccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE
Q 013475 211 DCSSRLVDVEKGIETQSFREELAVRVVKF--HPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
||.|++||+++++.+....|...|.+++| ++++ .+|++++.||.|++||+++++.+..+..+. .+.++.+. ...
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~ 182 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPM 182 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTE
T ss_pred CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCe
Confidence 99999999999999888889999999999 8875 889999999999999999999888887764 56666665 457
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccce-eeccccceeeeEEecCCCCe----eEEEeCCCeEEEeeCCCCcccccce
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSK-QVYVEAYTCPCVRHHPFDPY----FVAQSNGNYIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~i~i~~~~~~~~~~~~~ 363 (442)
+++++. ++.+.+|+++....... ..........++.+.++... +++++.++.|++|+++.........
T Consensus 183 ~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 183 AVVATA-------ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EEEEEG-------GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred eEEEeC-------CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 777776 99999999987543322 22233344555665555544 9999999999999999875433344
Q ss_pred eEeecccc----------cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee
Q 013475 364 RYESHGVS----------GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 364 ~~~~~~~~----------~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
.+..+... ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|...|.+++|+|++ .+|++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~s 334 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NIFAYAS 334 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-SCEEEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-CeEEEEe
Confidence 45444321 268999999999999999999999999999999999999999999999999999 7999999
Q ss_pred CCCcEEEc
Q 013475 434 WNGDVSVY 441 (442)
Q Consensus 434 ~dg~i~iw 441 (442)
.|+..+.|
T Consensus 335 ~d~~~~~~ 342 (368)
T 3mmy_A 335 SYDWSKGH 342 (368)
T ss_dssp CCCSTTCG
T ss_pred cccccccc
Confidence 88765544
No 35
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-42 Score=316.53 Aligned_cols=288 Identities=12% Similarity=0.131 Sum_probs=226.8
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
++.|.+.|++++|+|+ +++|++|+.||.|+|||+.+........+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 4457789999999999 999999999999999999655337778888999999999999999999999999999999999
Q ss_pred CCc---EEEee-eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc---eEEEecc-CCCCEeEEEEeeCCCEEEec
Q 013475 221 KGI---ETQSF-REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK---VAHEYIQ-SLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 221 ~~~---~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~ 292 (442)
+++ ....+ .|...|.+++|+|++ .+|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 887 34444 489999999999986 889999999999999999876 3677777 99999999999999999999
Q ss_pred cCCCCCcCCCCeEEEEeCCCCc------------------ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 293 SDVSGSNMSENSIVVWDVSREV------------------PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
+. |+.|++||++... .+... .+...+.+++|+|++++|++++.|+.|++||+.
T Consensus 165 ~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 165 CA-------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp ES-------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred eC-------CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 98 9999999996322 22222 667789999999999999999999999999999
Q ss_pred CCccccc-ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce--ee-------------------------
Q 013475 355 PPFRLDK-FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE--LE------------------------- 406 (442)
Q Consensus 355 ~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~--~~------------------------- 406 (442)
+...... +..+.. +...+.+++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 236 ~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T 3dwl_C 236 APEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE 312 (377)
T ss_dssp STTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred CCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence 8765211 233443 34678999999999999999877655 66654211 00
Q ss_pred ---------Eee----------------eccCCceeEEEEcCCCCC---EEEEeeCCCcEEEcC
Q 013475 407 ---------RKI----------------KAYEQACIDVAFHPILPN---IIGSCSWNGDVSVYE 442 (442)
Q Consensus 407 ---------~~~----------------~~~~~~v~~~~~~p~~~~---~l~s~~~dg~i~iwd 442 (442)
..+ ..|...|+++++.+..+. .|+|+|.||.|+|||
T Consensus 313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 011 128899999998765434 699999999999998
No 36
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-40 Score=310.09 Aligned_cols=251 Identities=22% Similarity=0.348 Sum_probs=225.9
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.++...++.+|.+.|++++|+|+ +++|++|+.||+|+|||+. ....+..+.+|...|.+++|+|++++|++++.|++
T Consensus 139 ~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~ 215 (410)
T 1vyh_C 139 TGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215 (410)
T ss_dssp TCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETT--SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred CCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 35677889999999999999999 8999999999999999994 45778889999999999999999999999999999
Q ss_pred EEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC-------
Q 013475 214 SRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN------- 285 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------- 285 (442)
|++||+.++.++..+. |...|.++.|++++ .+|++|+.|+.|++||+++++....+..|...|.+++|+|+
T Consensus 216 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 294 (410)
T 1vyh_C 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294 (410)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred EEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence 9999999999998888 88899999999996 89999999999999999999999999999999999999996
Q ss_pred -------------CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEee
Q 013475 286 -------------GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFS 352 (442)
Q Consensus 286 -------------~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~ 352 (442)
+.+|++++. |+.|++||++++..+..+. .+...+.++.|+|++.+|++++.|+.|++||
T Consensus 295 ~~~~~~~~~~~~~g~~l~sgs~-------D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 295 EATGSETKKSGKPGPFLLSGSR-------DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp GCCSCC-------CCEEEEEET-------TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred hhccccccccCCCCCEEEEEeC-------CCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 678999998 9999999999987665543 4667899999999999999999999999999
Q ss_pred CCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 353 STPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
....... ..+..| ...|++++|+|++.+|++|+.||.|+||+++
T Consensus 367 ~~~~~~~---~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 367 YKNKRCM---KTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CTTSCCC---EEEECC--SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCCceE---EEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9876544 444444 4679999999999999999999999999863
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=317.59 Aligned_cols=288 Identities=19% Similarity=0.353 Sum_probs=244.5
Q ss_pred cccceEEEEeeCCCCCEEEEe----------cCCCcEEEEEcccCCcc-eeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 144 HTKAVNSINWSPTHAHLLASA----------GMDQSICIWNVWSRDQK-LARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~----------~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
+...|.+++|+|++..+|++| +.|+.|+|||+.+.... ....+ .|...|++++|++++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 446789999999933499999 88999999999655322 34444 4899999999999999999999999
Q ss_pred cEEEEECCC----CcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc------eEE---EeccCCCCEe
Q 013475 213 SSRLVDVEK----GIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK------VAH---EYIQSLGPIL 278 (442)
Q Consensus 213 ~v~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~---~~~~~~~~i~ 278 (442)
.|++||+.+ .+.+..+. |...|.+++|+|++..+|++++.||.|++||+++++ ... .+..|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999998 34666666 889999999999855899999999999999999876 332 2367888999
Q ss_pred EEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-----cceeeeEEecCCC-CeeEEEeCCC---eE
Q 013475 279 DVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-----AYTCPCVRHHPFD-PYFVAQSNGN---YI 348 (442)
Q Consensus 279 ~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~l~~~~~~~---~i 348 (442)
+++|+++ +.+|++++. |+.|++||+++++.+....... ...+.++.|+|++ .++++++.++ .|
T Consensus 170 ~~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGS-------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp EEEECSSCTTEEEEESS-------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred EEEeCCCCCcEEEEEcC-------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 9999999 789999998 9999999999987776665543 6789999999997 5888899998 99
Q ss_pred EEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCC
Q 013475 349 AIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPN 427 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 427 (442)
++||++...... ..+. ..+...+.+++|+| ++++|++++.||.|++||+.+++.+..+..|...|.+++|+|+++.
T Consensus 243 ~~~d~~~~~~~~--~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 243 LIWDLRNANTPL--QTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp CEEETTSTTSCS--BCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred EEEeCCCCCCCc--EEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence 999998753221 2222 13456799999999 9999999999999999999999999999999999999999999867
Q ss_pred EEEEeeCCCcEEEcC
Q 013475 428 IIGSCSWNGDVSVYE 442 (442)
Q Consensus 428 ~l~s~~~dg~i~iwd 442 (442)
+|++++.||.|+|||
T Consensus 320 ~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 320 LFACASFDNKIEVQT 334 (416)
T ss_dssp EEEECCSSSEEEEEE
T ss_pred EEEEEecCCcEEEEE
Confidence 999999999999996
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=309.91 Aligned_cols=279 Identities=21% Similarity=0.282 Sum_probs=246.8
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
+|.+.|++++|+|+ +++|++|+.||.|++||. .......+..|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 106 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 106 KTTNQVTCLAWSHD-GNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp --CBCEEEEEECTT-SSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred CCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 47889999999999 999999999999999993 35677788889999999999999999999999999999999999
Q ss_pred cEEEeee-CCcc---------------eEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCC
Q 013475 223 IETQSFR-EELA---------------VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 223 ~~~~~~~-~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (442)
+.+..+. +... +.+++|+++ ..+++++.+|.|++||+++++.+..+..|...|.+++|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 9888887 3444 899999997 468899999999999999999999999999999999999999
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
++|++++. |+.|++||+++.+.+... ..+...+.++.|+|++ ++++++.++.|++||+...... ..+.
T Consensus 260 ~~l~~~~~-------d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~---~~~~ 327 (425)
T 1r5m_A 260 KLLLSASD-------DGTLRIWHGGNGNSQNCF-YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL---ALSI 327 (425)
T ss_dssp TEEEEEET-------TSCEEEECSSSBSCSEEE-CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE---EEEE
T ss_pred CEEEEEcC-------CCEEEEEECCCCccceEe-cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe---Eecc
Confidence 99999998 999999999987766554 3456689999999999 9999999999999999876543 3333
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce--------------------eeEeeeccCC--ceeEEEEcCC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE--------------------LERKIKAYEQ--ACIDVAFHPI 424 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~ 424 (442)
.+...+.+++|+|++++|++++.||.|++||+.+++ .+..+..|.. .|++++|+|+
T Consensus 328 --~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 328 --VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp --CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred --cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 334678999999999999999999999999999888 8899999976 9999999999
Q ss_pred CCCEEEEeeCCCcEEEcC
Q 013475 425 LPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 425 ~~~~l~s~~~dg~i~iwd 442 (442)
+ .+|++++.||.|+|||
T Consensus 406 ~-~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 406 G-NKISVAYSLQEGSVVA 422 (425)
T ss_dssp S-SEEEEEESSSCCEEEE
T ss_pred C-ceEEEEecCceEEEEe
Confidence 9 7999999999999996
No 39
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6e-41 Score=306.92 Aligned_cols=283 Identities=14% Similarity=0.116 Sum_probs=222.1
Q ss_pred ccceEEEEeeCCCCCEEEEecCCC-------cEEEEEcccCCcc--------eeeeeccCCCceeEEEeCCCCCEEEEEe
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQ-------SICIWNVWSRDQK--------LARVLNFHSAAVNDVKWSQQGLFVLSCG 209 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg-------~i~iwd~~~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 209 (442)
.-+|++++|+|| +++|++|+.|. .|++|++...... ....+..|...|.+++++ ++.++++.
T Consensus 14 g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 358999999999 99999987543 5999998654322 123466788899998875 45666654
Q ss_pred -----------cCCcEEEEECCCCcEEEe----ee------CCcceEEEEEccCCCCEEE--EeeCCCcEEEEECCCCce
Q 013475 210 -----------YDCSSRLVDVEKGIETQS----FR------EELAVRVVKFHPENSNLFL--SGGSKGLLRLWDIRTGKV 266 (442)
Q Consensus 210 -----------~d~~v~vwd~~~~~~~~~----~~------~~~~v~~~~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~ 266 (442)
.|+.+++|++.+...... .. +...+.+++|+||| ++++ +++.|++|+|||+++++.
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcE
Confidence 477899999876532211 11 34458899999997 5544 455789999999999998
Q ss_pred EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc-eeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 267 AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS-KQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
+..+. |...|.+++|+|+|+++++++ ++.+.+|+..++..+. .....+...+.+++|+|++.++++++.+
T Consensus 170 ~~~~~-~~~~V~~v~fspdg~~l~s~s--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d 240 (365)
T 4h5i_A 170 KFEIE-TRGEVKDLHFSTDGKVVAYIT--------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK 240 (365)
T ss_dssp EEEEE-CSSCCCEEEECTTSSEEEEEC--------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred EEEeC-CCCceEEEEEccCCceEEecc--------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence 88875 668899999999999999998 5667777776665543 3444567789999999999999998877
Q ss_pred C----eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee-eccCCceeEEE
Q 013475 346 N----YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI-KAYEQACIDVA 420 (442)
Q Consensus 346 ~----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~ 420 (442)
+ .+++|+........ ........+...|++++|+|+|++||+|+.|+.|+|||+.+++++..+ .+|...|++++
T Consensus 241 ~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSV-LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp SSCCEEEEEEEEETTEEEE-EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred CcceeEEeecccccceecc-eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence 6 68888876543321 122223345577999999999999999999999999999999999875 78999999999
Q ss_pred EcCCCCCEEEEeeCCCcEEEcC
Q 013475 421 FHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+||+ ++|+|||.|++|+|||
T Consensus 320 fSpdg-~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 320 ISPDS-TYVASVSAANTIHIIK 340 (365)
T ss_dssp ECTTS-CEEEEEETTSEEEEEE
T ss_pred ECCCC-CEEEEEeCCCeEEEEE
Confidence 99999 7999999999999996
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=293.44 Aligned_cols=248 Identities=21% Similarity=0.316 Sum_probs=223.4
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
....+.+|...|.+++|+++ +.++++++.|++|+|||+.+ .+.+..+..|...+.+++|+|++++|++++.|+.|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148 (321)
T ss_dssp EEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTT--TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred eeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCC--CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence 45578999999999999999 89999999999999999954 4777788889999999999999999999999999999
Q ss_pred EECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 217 VDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 217 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
||+++++....+. +...+.+++|+|++ ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~- 226 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD- 226 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT-
T ss_pred EEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC-
Confidence 9999999888877 77889999999996 89999999999999999999999999999999999999999999999998
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
|+.|++||++....... ...+...+.+++|+|++.+|++++.|+.|++||+.+...+ ..+.. +...|.
T Consensus 227 ------dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~--h~~~v~ 294 (321)
T 3ow8_A 227 ------DGYIKIYDVQHANLAGT-LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV---HTFFD--HQDQVW 294 (321)
T ss_dssp ------TSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---EEECC--CSSCEE
T ss_pred ------CCeEEEEECCCcceeEE-EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE---EEEcC--CCCcEE
Confidence 99999999998766544 3456678999999999999999999999999999877554 33333 457799
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecC
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+++|+++|++|++++.||.|+|||+.
T Consensus 295 ~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 295 GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999963
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=294.23 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=207.9
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcce--eeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKL--ARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
...|...|++++|+++ + .|++|+.||+|+|||+.+++... ...+.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 78 ~~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3457789999999998 5 57899999999999997664332 234558999999999999999999999999999999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec--cCCCCEeEEEEeeC-CCEEEeccC
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI--QSLGPILDVEFTIN-GKQFVSSSD 294 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~ 294 (442)
+++++++..+. |...|.+++|++++..+|++++.|+.|++||+++++....+. .+...+.+++|+|+ +++|++++.
T Consensus 156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence 99999999998 899999999999987899999999999999999998887774 34557899999985 568888888
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
|+.|++||+++++.+..+. .+...+.+++|+|++ .+|++++.|+.|++||...+... .+ ..|...
T Consensus 236 -------dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----~~--~~H~~~ 301 (344)
T 4gqb_B 236 -------NGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----RS--QAHRDF 301 (344)
T ss_dssp -------TSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----EE--CCCSSC
T ss_pred -------CCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----EE--cCCCCC
Confidence 9999999999988776544 566789999999998 47888999999999999876432 23 345678
Q ss_pred cEEEEEccCCC-EEEEecCCCcEEEEecCCcee
Q 013475 374 PIKCSFSLDGE-KLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 374 v~~~~~s~~g~-~l~~g~~dg~i~iwd~~~~~~ 405 (442)
|++++|+|+++ +|++|+.||+|++|++.+...
T Consensus 302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999886 567899999999999986543
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.8e-40 Score=291.28 Aligned_cols=256 Identities=17% Similarity=0.245 Sum_probs=213.1
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--CCCEEEEEecCCcEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSR 215 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~v~ 215 (442)
+..+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.....+.+..+.+|.+.|.+++|++ ++++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 3567899999999999999 9999999999999999997655577888999999999999986 389999999999999
Q ss_pred EEECCCCc--EEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCc--eEEEeccCCCCEeEEEEeeC----
Q 013475 216 LVDVEKGI--ETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGPILDVEFTIN---- 285 (442)
Q Consensus 216 vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~---- 285 (442)
+||+++++ .+..+. |...|.+++|+|+. ..+|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 444454 88899999999972 3799999999999999998763 24567789999999999997
Q ss_pred ---------CCEEEeccCCCCCcCCCCeEEEEeCCCCcc---cceeeccccceeeeEEecCCC---CeeEEEeCCCeEEE
Q 013475 286 ---------GKQFVSSSDVSGSNMSENSIVVWDVSREVP---LSKQVYVEAYTCPCVRHHPFD---PYFVAQSNGNYIAI 350 (442)
Q Consensus 286 ---------~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~i~i 350 (442)
+++|++++. |+.|++||+++... .......|...+.+++|+|++ .+|++++.|+.|++
T Consensus 161 ~~~~~~~~~~~~l~sgs~-------D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA-------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp ---------CCEEEEEET-------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cccCCCCCCcceEEEEcC-------CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 579999998 99999999987652 222334577789999999985 88999999999999
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
|+.+..........+....+...+.+++|+|+|++|++++.||.|+||+..
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 998764321111122123445778999999999999999999999999976
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=302.45 Aligned_cols=282 Identities=17% Similarity=0.245 Sum_probs=238.9
Q ss_pred cccccceEEEEeeCCCCC-EEEEecCCCcEEEEEc----ccCCc----ceeeeecc----------CCCceeEEEeCCCC
Q 013475 142 CHHTKAVNSINWSPTHAH-LLASAGMDQSICIWNV----WSRDQ----KLARVLNF----------HSAAVNDVKWSQQG 202 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~----~~~~~----~~~~~~~~----------h~~~v~~l~~~~~~ 202 (442)
..|.+.|++++|+|+ ++ +|++|+.||.|++|++ .++.. .....+.. |...|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345699999999999 77 9999999999999999 65531 02233332 67899999999999
Q ss_pred CEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCC-----
Q 013475 203 LFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGP----- 276 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 276 (442)
++|++++.||.|++|| .+++.+..+. |...|.+++|+|++ .+|++++.||.|++||+++++.+..+..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 9999999999999999 6667777777 88999999999986 89999999999999999999999888887766
Q ss_pred ----------EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC
Q 013475 277 ----------ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN 346 (442)
Q Consensus 277 ----------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (442)
+.++.|++++. +++++. ++.|++||++++..+.... .+...+.++.|+|+++++++++.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~ 269 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDK-FVIPGP-------KGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDG 269 (425)
T ss_dssp -------CCCBSCCEEEETTE-EEEECG-------GGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTS
T ss_pred eccccCCcceeeEEEEcCCCE-EEEEcC-------CCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999865 666666 9999999999886655443 5667899999999999999999999
Q ss_pred eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCC
Q 013475 347 YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILP 426 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~ 426 (442)
.|++||+...... ..+. .+...+.+++|+|++ +|++++.||.|++||+.+++.+..+..|...|.+++|+|++
T Consensus 270 ~i~i~d~~~~~~~---~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~- 342 (425)
T 1r5m_A 270 TLRIWHGGNGNSQ---NCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG- 342 (425)
T ss_dssp CEEEECSSSBSCS---EEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS-
T ss_pred EEEEEECCCCccc---eEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC-
Confidence 9999999876544 3333 345679999999999 99999999999999999999999999999999999999998
Q ss_pred CEEEEeeCCCcEEEcC
Q 013475 427 NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 427 ~~l~s~~~dg~i~iwd 442 (442)
.+|++++.||.|+|||
T Consensus 343 ~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYD 358 (425)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCeEEEEE
Confidence 7999999999999996
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.5e-39 Score=300.29 Aligned_cols=276 Identities=15% Similarity=0.257 Sum_probs=234.8
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 226 (442)
-++.|+||++ ++||+|. |++|+|||..+++......+.+|...|++|+|+|+|++|++|+.||.|+|||+++++.+.
T Consensus 107 y~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 3678999976 4787775 899999999776444444556788899999999999999999999999999999999998
Q ss_pred eee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 227 SFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 227 ~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
.+. |...+.++.++ ..+|++|+.|+.+++||.+.. ..+..+.+|...+..+.|++++.++++++. |+.
T Consensus 184 ~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-------D~~ 253 (420)
T 4gga_A 184 NMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-------DNL 253 (420)
T ss_dssp EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSC
T ss_pred EEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec-------ccc
Confidence 888 88889988885 378999999999999999864 456788899999999999999999999998 999
Q ss_pred EEEEeCCCCccc---ceeeccccceeeeEEecCCCCeeEE---EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEE
Q 013475 305 IVVWDVSREVPL---SKQVYVEAYTCPCVRHHPFDPYFVA---QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCS 378 (442)
Q Consensus 305 i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 378 (442)
+++|+...++.. ......+...+.++.|+|.+..+++ |+.|+.|++||+.++..... +. ....+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~---~~---~~~~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VD---AHSQVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE---EE---CSSCEEEEE
T ss_pred ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee---ec---cccceeeee
Confidence 999999876532 2334456678999999998765543 45799999999998755422 22 235688999
Q ss_pred EccCCCEEEEec--CCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 379 FSLDGEKLVSGS--SDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 379 ~s~~g~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+++++.|++++ .||.|+|||+.+++++.++.+|.+.|++++|+|++ .+|+||+.||+|+|||
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWR 392 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEEC
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEE
Confidence 999999988754 79999999999999999999999999999999999 7999999999999997
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-39 Score=329.22 Aligned_cols=291 Identities=17% Similarity=0.276 Sum_probs=258.8
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
+..+.|.+|.+.|++++|+|+ +++|++|+.||.|+|||+.+ ......+.+|...|.+++|+|++++|++++.||.|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 456788999999999999999 99999999999999999944 577888889999999999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEee-CCCEEEec
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTI-NGKQFVSS 292 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 292 (442)
+||+.+++.+..+. |...|++++|+|++ .+|++++.||.|++||+.++ .....+..|...|.+++|+| ++..|+++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99999999998888 88999999999996 88999999999999999987 66778889999999999999 88999999
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC--CCCeeEEEeCCCeEEEeeCCCCcccccceeEeeccc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
+. |+.|++||+..+.........+...+.++.|+| ++.++++++.++.|++||....... ..+.. +
T Consensus 160 ~~-------dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~--~ 227 (814)
T 3mkq_A 160 CL-------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEG--H 227 (814)
T ss_dssp ET-------TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE---EEEEC--C
T ss_pred eC-------CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE---EEEcC--C
Confidence 98 999999999988877777766667899999999 9999999999999999999876543 33333 4
Q ss_pred ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+.+++|+|+|++|++++.||.|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.+.+|+
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 467899999999999999999999999999999999999999999999999999854434444566677663
No 46
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-39 Score=295.44 Aligned_cols=251 Identities=19% Similarity=0.294 Sum_probs=222.0
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
.++.+..+..|...|.+++|+|+ +++|++|+.|+.|++|++.+... .....+.+|.+.|.++.|++++. |++++.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred CCCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence 45667888899999999999999 99999999999999999965432 45667888999999999998765 8899999
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
++|++||+.+++.+..+. |...|.+++|+|++ .+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|+
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 242 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE
Confidence 999999999999998888 88999999999986 8999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+++. |+.|++||++....+...... ....+.+++|+|++.++++++.|+.|++||....... ..+.+
T Consensus 243 s~s~-------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~~~~-- 310 (340)
T 1got_B 243 TGSD-------DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA---GVLAG-- 310 (340)
T ss_dssp EEET-------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEEC--
T ss_pred EEcC-------CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe---eEeec--
Confidence 9998 999999999987765544322 2346899999999999999999999999999876543 34444
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
|...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 457799999999999999999999999997
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-39 Score=303.05 Aligned_cols=290 Identities=14% Similarity=0.137 Sum_probs=240.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
+....+..| ..+....|+++ +++|++|+.||.|+|||+. .......+.+|...|++++|+|++++|++++.|+.|+
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 164 (420)
T 3vl1_A 89 DGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLK 164 (420)
T ss_dssp ETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTT--SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCC--CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEE
Confidence 334455556 44555578888 8999999999999999995 4467777888999999999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc---CCCCEeE------------
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ---SLGPILD------------ 279 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~------------ 279 (442)
+||+.+++.+..+. |...|.+++|+|++ .+|++++.||.|++||+++++.+..+.. +...|.+
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 243 (420)
T 3vl1_A 165 IWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH 243 (420)
T ss_dssp EEETTTCCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred EEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee
Confidence 99999999888888 89999999999996 8999999999999999999998888875 3334444
Q ss_pred ---------EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCC-eeEEEeCCCeEE
Q 013475 280 ---------VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIA 349 (442)
Q Consensus 280 ---------~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~ 349 (442)
++|++++++|++++. |+.|++||++++..+......+...+.+++|+|++. ++++++.|+.|+
T Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 244 EISTSKKNNLEFGTYGKYVIAGHV-------SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp GGCCCCCCTTCSSCTTEEEEEEET-------TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred ecccCcccceEEcCCCCEEEEEcC-------CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 455788999999998 999999999998877777777778999999999999 999999999999
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc---------eeeEeeeccCCceeEEE
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS---------ELERKIKAYEQACIDVA 420 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~ 420 (442)
+||+.+.... +..+..+ +...+..+ +.+++++|++++.||.|++||+... .....+..|...|.+++
T Consensus 317 vwd~~~~~~~--~~~~~~~-~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 317 QWDLRSPECP--VGEFLIN-EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp EEETTCTTSC--SEEEEES-TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred EEEcCCCcCc--hhhhhcc-CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 9999876442 2333332 23456666 5568899999999999999998763 22334567888999999
Q ss_pred EcCCCCC---EEEEeeCCCcEEEcC
Q 013475 421 FHPILPN---IIGSCSWNGDVSVYE 442 (442)
Q Consensus 421 ~~p~~~~---~l~s~~~dg~i~iwd 442 (442)
|+|++ . .|++++.+|.+.+|+
T Consensus 393 ~s~~~-~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 393 YVSDD-ESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EECCS-SSSCEEEEEETTTEEEEEE
T ss_pred EccCC-CCcceEEEEcCCceEEEEe
Confidence 99998 5 566667799999995
No 48
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-39 Score=296.38 Aligned_cols=283 Identities=12% Similarity=0.053 Sum_probs=240.4
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-cceeeeeccCCCceeEEEeCCCCC-EEEEEecCCcEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARVLNFHSAAVNDVKWSQQGL-FVLSCGYDCSSRL 216 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d~~v~v 216 (442)
....+|.+.|++++|+|+ +++|++++.||.|+||++.+.. ......+.+|...|.+++|+++++ +|++++.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 345689999999999999 9999999999999999997653 122344557999999999999999 9999999999999
Q ss_pred EEC-CCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC---------CceEEEeccCCCCEeEEEEee
Q 013475 217 VDV-EKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT---------GKVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 217 wd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~~~ 284 (442)
||+ .+++...... |...|.+++|++ + .+|++++.|+.|++||+++ ++.+..+. |...|.+++|++
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 8887766666 889999999999 5 8999999999999999987 66666666 788999999998
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCC-Ccc-cceeeccccceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCc---c
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSR-EVP-LSKQVYVEAYTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPF---R 358 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~---~ 358 (442)
++ +++++. |+.|++||+++ ... .......+...+.++.|+| ++.++++++.++.|++|+++... .
T Consensus 161 ~~--l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN-------NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES-------TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC-------CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 87 788887 99999999998 543 3334445677899999999 99999999999999999998751 0
Q ss_pred cccceeEeeccc-------ccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-CCceeEEEEcCCCCCEEE
Q 013475 359 LDKFKRYESHGV-------SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-EQACIDVAFHPILPNIIG 430 (442)
Q Consensus 359 ~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~ 430 (442)
......+..+.. ...+.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ +++ .+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~-~~l~ 308 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD-NILC 308 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS-SEEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC-CeEE
Confidence 122244444432 347999999999999999999999999999999999999998 99999999 888 7999
Q ss_pred EeeCCCc
Q 013475 431 SCSWNGD 437 (442)
Q Consensus 431 s~~~dg~ 437 (442)
+++.||.
T Consensus 309 s~s~Dg~ 315 (342)
T 1yfq_A 309 LATSDDT 315 (342)
T ss_dssp EEEECTH
T ss_pred EEecCCc
Confidence 9999998
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-39 Score=297.61 Aligned_cols=284 Identities=15% Similarity=0.257 Sum_probs=235.7
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc-CCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-HSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
+....+|...+.+..++.+ +..+++++.||.|++||+.++ .....+.. |...|.+++|+|++++|++++.||.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~s-~~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWS-NLNVVAVALERNVYVWNADSG--SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EEECTTCCCCTTCBCEEEC-TTSEEEEEETTEEEEEETTTC--CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeCCCCcCCceEEEEeec-CCCEEEEECCCeEEEeeCCCC--cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 3444577776544444433 345778889999999999665 34444433 8899999999999999999999999999
Q ss_pred EECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-CCceEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 217 VDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKVAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 217 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
||+.+++.+..+. |...|.+++|+ ..+|++++.||.|++||++ ....+..+..|.+.|.+++|++++++|++++.
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 9999999998887 88999999994 3789999999999999998 46678888999999999999999999999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE-Ee--CCCeEEEeeCCCCcccccceeEeecccc
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA-QS--NGNYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
|+.|++||+++...+... ..+...+.+++|+|++..+++ ++ .|+.|++||+.+...... + .+.
T Consensus 238 -------d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~---~---~~~ 303 (401)
T 4aez_A 238 -------DNVVQIWDARSSIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT---V---DAG 303 (401)
T ss_dssp -------TSCEEEEETTCSSEEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE---E---ECS
T ss_pred -------CCeEEEccCCCCCccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE---E---eCC
Confidence 999999999987665444 346678999999998766555 33 699999999988755432 2 233
Q ss_pred cCcEEEEEccCCCEEEE--ecCCCcEEEEecCCceeeE--eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 372 GFPIKCSFSLDGEKLVS--GSSDGSIYFYNCRSSELER--KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~--g~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
..+.+++|++++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+|++ .+|++++.||.|++||
T Consensus 304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG-RILSTAASDENLKFWR 377 (401)
T ss_dssp SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS-SEEEEECTTSEEEEEE
T ss_pred CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEE
Confidence 56899999999999999 6689999999999865544 467899999999999999 7999999999999996
No 50
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=284.16 Aligned_cols=275 Identities=15% Similarity=0.250 Sum_probs=230.1
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
+++|+||++ + +||+|. |++|+|||+.+++......+.+|...|++++|++++++|++|+.||+|++||+++++.+..
T Consensus 28 ~~~l~WS~~-~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSG-N-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTT-S-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCC-C-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 478999987 4 777765 8999999997664444444567888999999999999999999999999999999999988
Q ss_pred ee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 228 FR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 228 ~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
+. |...+.++.+. ..++++++.++.+++|+.... ..+..+.+|...+..+.+++++++|++++. |+.|
T Consensus 105 ~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------d~~i 174 (318)
T 4ggc_A 105 MTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-------DNLV 174 (318)
T ss_dssp EECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCE
T ss_pred ecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-------Ccce
Confidence 88 77777766654 378999999999999998875 456778899999999999999999999998 9999
Q ss_pred EEEeCCCCcccc---eeeccccceeeeEEecCCCCeeE---EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 306 VVWDVSREVPLS---KQVYVEAYTCPCVRHHPFDPYFV---AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 306 ~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
++||+++++... .....+...+..+.+++.+..++ .++.++.|++|+........ ...+...+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~------~~~~~~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS------AVDAHSQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE------EEECSSCEEEEEE
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc------cccceeeeeeeee
Confidence 999998865432 23334556788899999877544 46778999999988764432 2233456889999
Q ss_pred ccCCCEEEEe--cCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 380 SLDGEKLVSG--SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 380 s~~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+++++.++++ +.||.|+|||+.+++++.++.+|.+.|++++|+|++ .+|+||+.||+|+|||
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWR 312 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEEC
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEE
Confidence 9999988764 479999999999999999999999999999999999 7999999999999997
No 51
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-38 Score=337.06 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=259.5
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.....+.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+ ...+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 344567899999999999999 99999999999999999954 477888889999999999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+||+.+++.+..+. |...|.+++|++++ ..++++|+.||.|++||+++++.+..+.+|.+.|.+++|+|++++|++++
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 99999999999987 88999999999953 46889999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeecc------------ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYV------------EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
. ||.|++||++++......... ....+.+++|+|++..+++++ ++.+.+|+..+......
T Consensus 763 ~-------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 763 A-------DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp S-------SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEE
T ss_pred C-------CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeE
Confidence 8 999999999887655443221 123678899999999999987 68999999988765432
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+ ...+...+.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++ .+|++++.||.|++|
T Consensus 835 ~----~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 835 I----HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVW 909 (1249)
T ss_dssp E----ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred E----cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEE
Confidence 2 12445778999999999999999999999999999999999999999999999999998 799999999999999
Q ss_pred C
Q 013475 442 E 442 (442)
Q Consensus 442 d 442 (442)
|
T Consensus 910 ~ 910 (1249)
T 3sfz_A 910 E 910 (1249)
T ss_dssp E
T ss_pred E
Confidence 6
No 52
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.8e-39 Score=289.15 Aligned_cols=256 Identities=16% Similarity=0.288 Sum_probs=217.0
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
+..+..+.+|...|++++|+++ +++|++|+.|++|+|||+.+ .+....+.+|...|.+++|++++.+|++++.|++|
T Consensus 55 ~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 55 GVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131 (319)
T ss_dssp EEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred cccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 3457789999999999999999 99999999999999999954 47788889999999999999999999999999999
Q ss_pred EEEECCCCcEEEeeeCCcceEEEEEccCC-----CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 215 RLVDVEKGIETQSFREELAVRVVKFHPEN-----SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
++||++.........|...|.++.|+|.+ ..+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|
T Consensus 132 ~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred EEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence 99999755433334488999999999853 2489999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE---e
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY---E 366 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~---~ 366 (442)
++++. |+.|++||+++.+.+..... ...+.+++|+|++.++++++. +.+++|+++.......+... .
T Consensus 212 ~s~~~-------dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~ 281 (319)
T 3frx_A 212 ASAGK-------DGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGY 281 (319)
T ss_dssp EEEET-------TCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTC
T ss_pred EEEeC-------CCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcccccc
Confidence 99998 99999999999877665543 457999999999999888765 45999998875443222110 0
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
...+...+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 1123456889999999999999999999999998764
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.9e-40 Score=306.62 Aligned_cols=279 Identities=12% Similarity=0.147 Sum_probs=236.5
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
..+++++|+|+ +++|++++.||.|++||+.+ ......+..| ..+....|++++++|++++.|+.|++||+.+++..
T Consensus 57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNTII--RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEE-ETTEEEEEETTEEEEEECCS--EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeec-CCeEEEEEcCCcEEEEEecc--cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 34568999999 89999999999999999844 3445555545 44555678999999999999999999999999988
Q ss_pred Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 226 QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 226 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
..+. |...|++++|+|++ .+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++. |+.
T Consensus 133 ~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-------d~~ 204 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL-------DGT 204 (420)
T ss_dssp EETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET-------TSC
T ss_pred eecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC-------CCc
Confidence 8875 89999999999996 89999999999999999999999999999999999999999999999998 999
Q ss_pred EEEEeCCCCcccceeecc-----------------------ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 305 IVVWDVSREVPLSKQVYV-----------------------EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 305 i~iwd~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
|++||+++++.+...... +...+.++.|+|+++++++++.++.|++||+........
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 999999988766655432 124566677899999999999999999999987754422
Q ss_pred ceeEeecccccCcEEEEEccCCC-EEEEecCCCcEEEEecCCcee-eEeeec-cCCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGE-KLVSGSSDGSIYFYNCRSSEL-ERKIKA-YEQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
+ ...+...+.+++|+|+++ +|++|+.||.|++||+.+++. +..+.. |...|.++.|. ++ .+|++++.||.|
T Consensus 285 ~----~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v 358 (420)
T 3vl1_A 285 L----PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSI 358 (420)
T ss_dssp E----CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEE
T ss_pred c----ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccE
Confidence 2 123456799999999998 999999999999999998754 777776 56788888665 55 699999999999
Q ss_pred EEcC
Q 013475 439 SVYE 442 (442)
Q Consensus 439 ~iwd 442 (442)
+|||
T Consensus 359 ~iw~ 362 (420)
T 3vl1_A 359 KLDI 362 (420)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 54
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=291.21 Aligned_cols=260 Identities=19% Similarity=0.305 Sum_probs=212.9
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
..+|.+.|++++|+|+ +++|++|+.|++|+||++..........+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 57 ~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp CSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred ccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 4689999999999999 999999999999999999766667788899999999999999999999999999999999998
Q ss_pred CCcE---EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc--eEEEeccCCCCEeEEEEeeCCCEEEeccC
Q 013475 221 KGIE---TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 221 ~~~~---~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
++.. +..+. |...|.+++|+|++ .+|++++.|+.|++||+++++ ....+.+|...|.+++|+|+|++|++++.
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 7643 44444 78899999999996 899999999999999998875 45778899999999999999999999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcc---------------cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 295 VSGSNMSENSIVVWDVSREVP---------------LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
|++|++||...... +......+...+.+++|++++..+++++.|+.|++|+.......
T Consensus 215 -------D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 287 (345)
T 3fm0_A 215 -------DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP 287 (345)
T ss_dssp -------TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT
T ss_pred -------CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc
Confidence 99999999743221 11222235668999999999999999999999999998764322
Q ss_pred cc----ceeEeecccccCcEEEEEccCC-CEEEEecCCCcEEEEecCCceeeEee
Q 013475 360 DK----FKRYESHGVSGFPIKCSFSLDG-EKLVSGSSDGSIYFYNCRSSELERKI 409 (442)
Q Consensus 360 ~~----~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~iwd~~~~~~~~~~ 409 (442)
.. +.......|...|.+++|+|++ .+|++|+.||.|++|++.+++....+
T Consensus 288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 11 1111122456789999999987 59999999999999999887765543
No 55
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.1e-40 Score=294.59 Aligned_cols=267 Identities=17% Similarity=0.261 Sum_probs=201.1
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--CCCEEEEEecCCcEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCSSRL 216 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~v~v 216 (442)
..+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.++....+..+.+|.+.|.+++|++ ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 456799999999999999 9999999999999999997664456778899999999999986 4899999999999999
Q ss_pred EECCCCc--EEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCce---EEEeccCCCCEeEEEEeeCCCEE
Q 013475 217 VDVEKGI--ETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKV---AHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 217 wd~~~~~--~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
||+++++ ....+. |...|.+++|+|++ ..+|++|+.|+.|++||++.+.. ...+..|...|.++.|+|++..
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~- 164 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP- 164 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC-
Confidence 9999874 455555 88899999999973 37899999999999999987632 3455678889999999987420
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+.+ .+...+ .....+.+|++++.|+.|++||............+. .
T Consensus 165 -------------~~~--~~~~~~-----------------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~ 210 (316)
T 3bg1_A 165 -------------GSL--IDHPSG-----------------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--A 210 (316)
T ss_dssp ---------------------CCS-----------------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--C
T ss_pred -------------ccc--cccccc-----------------cCccccceEEEecCCCeEEEEEeCCCCccceeeecc--c
Confidence 000 000000 001124566667777777777765432211123333 3
Q ss_pred cccCcEEEEEccCC----CEEEEecCCCcEEEEecCCc---e-eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 370 VSGFPIKCSFSLDG----EKLVSGSSDGSIYFYNCRSS---E-LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 370 ~~~~v~~~~~s~~g----~~l~~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
|...|.+++|+|++ ++|++|+.||+|+|||+.+. + ....+..|...|.+++|+|++ .+|++++.||.|+||
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw 289 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLW 289 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEE
Confidence 45779999999986 89999999999999998762 1 234556789999999999999 799999999999999
Q ss_pred C
Q 013475 442 E 442 (442)
Q Consensus 442 d 442 (442)
|
T Consensus 290 ~ 290 (316)
T 3bg1_A 290 K 290 (316)
T ss_dssp E
T ss_pred E
Confidence 6
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.8e-38 Score=287.85 Aligned_cols=278 Identities=13% Similarity=0.170 Sum_probs=236.6
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI 223 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~ 223 (442)
|.+.|.+++|+|| |++++++..++.+.+|... .........+|...|++++|++++++|++++ ||.|++||+.+++
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIP--RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCC--SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccC--CccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999 9999888878777777652 2233333346999999999999999999999 9999999998865
Q ss_pred EE---Eee---eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc--eEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 224 ET---QSF---REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 224 ~~---~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
.. ..+ .+...|.+++|+|++ .+|++++.||.|++||+++++ ....+..|...|.+++|++++++|++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 161 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS- 161 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-
T ss_pred ceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-
Confidence 33 222 378899999999986 899999999999999999877 56777889899999999999999999998
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
|+.|++||+++++.+.... .+...+.++.|+|++.++++++.++.|++||+........ ..+...+.
T Consensus 162 ------dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~v~ 228 (337)
T 1gxr_A 162 ------DGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ------HDFTSQIF 228 (337)
T ss_dssp ------TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------EECSSCEE
T ss_pred ------CCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee------ecCCCceE
Confidence 9999999999887655443 4566899999999999999999999999999988654322 22346689
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+++|+|++++|++++.+|.|++||+.+++. ..+..|...|.+++|+|++ .+|++++.||.|++||
T Consensus 229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEE
Confidence 999999999999999999999999998775 4677899999999999998 7999999999999996
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=307.67 Aligned_cols=291 Identities=11% Similarity=0.088 Sum_probs=220.4
Q ss_pred ecccccccceEEEEeeCC-----CCCEEEEecCCCcEEEEEcccCCcc---------eeeeeccCCCceeEEEeCCCCCE
Q 013475 139 TALCHHTKAVNSINWSPT-----HAHLLASAGMDQSICIWNVWSRDQK---------LARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~-----~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
.++.+|.+.|++++|+|+ ++.+||+++.||+|+|||+...... ....+.+|...|++++|++++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 456788999999999996 2579999999999999999654221 234677899999999999864 8
Q ss_pred EEEEecCCcEEEEECCCCc-EEEeee-CCcceEEE--EEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC--CEe
Q 013475 205 VLSCGYDCSSRLVDVEKGI-ETQSFR-EELAVRVV--KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG--PIL 278 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~ 278 (442)
|++|+.||+|++||++++. ....+. |...|.++ .|++++..+|++|+.|++|+|||+++++.+..+.+|.. .|.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 9999999999999999774 344455 88999999 56776447999999999999999998877666666643 588
Q ss_pred EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 279 DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
+++|+|++..|++++. |++|++||++++..+..+. .|...|.+++|+|++++|++|+.|+.|++|+.....
T Consensus 360 ~v~fsp~~~~l~s~~~-------d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~- 430 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDG-------ASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL- 430 (524)
T ss_dssp CEEEETTTTEEEEECS-------SSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-
T ss_pred ceEeCCCcCeEEEeCC-------CCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-
Confidence 9999999999999998 9999999999877655443 577799999999999999999999999999986531
Q ss_pred cccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC-CceeeEeeeccCCceeEEEEcCCC--CCEEEEeeCC
Q 013475 359 LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR-SSELERKIKAYEQACIDVAFHPIL--PNIIGSCSWN 435 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~d 435 (442)
+...+..........+..++|+|+|+.+.. ..+ +.+|+.. ++.++..+.+|...|.+|+|+|++ ..+|++|+.|
T Consensus 431 ~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~ 507 (524)
T 2j04_B 431 LHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA 507 (524)
T ss_dssp TTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred ccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence 111110000011124668999999986533 223 3344433 577888899999999999999996 2599999999
Q ss_pred CcEEEcC
Q 013475 436 GDVSVYE 442 (442)
Q Consensus 436 g~i~iwd 442 (442)
|.|+||+
T Consensus 508 g~vrlw~ 514 (524)
T 2j04_B 508 GLLTLEY 514 (524)
T ss_dssp SEEEEEE
T ss_pred ceEEEEE
Confidence 9999995
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=297.12 Aligned_cols=282 Identities=15% Similarity=0.269 Sum_probs=225.8
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---------cceeeeeccCC------------CceeEEEeCCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---------QKLARVLNFHS------------AAVNDVKWSQQ 201 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~h~------------~~v~~l~~~~~ 201 (442)
.|.+.|++++|+|+ +++||+|+.||.|+|||+.+.. ......+.+|. ..|++++|+|+
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 37899999999999 9999999999999999996542 12567788898 88999999999
Q ss_pred C--CEEEEEecCCcEEEEECCCCcEE---------------------------------------Eee--eCCcceEEEE
Q 013475 202 G--LFVLSCGYDCSSRLVDVEKGIET---------------------------------------QSF--REELAVRVVK 238 (442)
Q Consensus 202 ~--~~l~s~~~d~~v~vwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~ 238 (442)
+ .+|++++.|+.|++||+.++... ..+ .|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999999875432 122 3888999999
Q ss_pred EccCCCCEEEEeeCCCcEEEEECCCC-ceEE-------EeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEEEEe
Q 013475 239 FHPENSNLFLSGGSKGLLRLWDIRTG-KVAH-------EYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIVVWD 309 (442)
Q Consensus 239 ~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~iwd 309 (442)
|+|++ .+|++| .|+.|++||+++. +.+. .+..|...|.+++|+|++ ++|++++. |+.|++||
T Consensus 185 ~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------dg~i~iwd 255 (447)
T 3dw8_B 185 INSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-------KGTIRLCD 255 (447)
T ss_dssp ECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-------TSCEEEEE
T ss_pred EcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-------CCeEEEEE
Confidence 99986 888888 7999999999843 3443 256888999999999998 99999998 99999999
Q ss_pred CCCCcc----cceeecccc-----------ceeeeEEecCCCCeeEEEeCCCeEEEeeCCC-CcccccceeEeecccccC
Q 013475 310 VSREVP----LSKQVYVEA-----------YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP-PFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 310 ~~~~~~----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~ 373 (442)
++++.. ...+..... ..+.+++|+|++++|++++. +.|++||+.. .... ..+..|.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---~~~~~~~~~~~ 331 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---ETYQVHEYLRS 331 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS---CCEESCGGGTT
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc---ceeeccccccc
Confidence 998775 233322222 28999999999999999999 9999999986 4433 34444431111
Q ss_pred -------------cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec-----------------------------
Q 013475 374 -------------PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA----------------------------- 411 (442)
Q Consensus 374 -------------v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------------------------- 411 (442)
+..++|+|+|++|++|+.||.|+|||+.+++.+. +..
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccc
Confidence 2348999999999999999999999999887653 222
Q ss_pred ----cCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 412 ----YEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 412 ----~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+...|.+++|+|++ .+|++++.|+ +++|
T Consensus 411 ~~~~~~~~i~~~~~~p~~-~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHPKE-NIIAVATTNN-LYIF 442 (447)
T ss_dssp GGCCTTSCCCEEEECSSS-SEEEEECSSC-EEEE
T ss_pred cccccCCceeEEEECCCC-CEEEEEecce-eeee
Confidence 24568899999999 7999998776 6666
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-38 Score=288.30 Aligned_cols=253 Identities=19% Similarity=0.290 Sum_probs=221.4
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC----cceeeeeccCCCceeEEEeCCCCCEEEEEe
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD----QKLARVLNFHSAAVNDVKWSQQGLFVLSCG 209 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 209 (442)
+.+..+.+..|...|.+++|+|+ +.+|++|+.|+.+++|++.... ......+.+|...|.+++|++++..|++++
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s 173 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe
Confidence 45667778889999999999999 9999999999999999985331 234566778999999999999999999999
Q ss_pred cCCcEEEEECCCCcEEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475 210 YDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
.|++|++||+++++.+..+. |...|.++.|+|+. .++|++|+.||.|++||+++++.+..+..|...|.+++|+|++.
T Consensus 174 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999999999999888 88899999998852 37999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
+|++++. |++|++||++....+...... ....+.++.|+|++.++++++.|+.|++||+..+... ..+.
T Consensus 254 ~l~s~s~-------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~l~ 323 (354)
T 2pbi_B 254 AFASGSD-------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV---SILF 323 (354)
T ss_dssp EEEEEET-------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---EEEC
T ss_pred EEEEEeC-------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE---EEEE
Confidence 9999998 999999999987655443322 2346789999999999999999999999999876544 3333
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
.|...|.+++|+|+|++|++|+.||.|+||+
T Consensus 324 --~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 --GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp --CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred --CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 4457799999999999999999999999996
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-39 Score=297.54 Aligned_cols=262 Identities=20% Similarity=0.281 Sum_probs=223.2
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC-----CcceeeeeccCCCceeEEEeCCC-CCEEEE
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-----DQKLARVLNFHSAAVNDVKWSQQ-GLFVLS 207 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s 207 (442)
.++....+.+|...|.+++|+|+ +++|++|+.|+.|+||++.+. .......+.+|.+.|.++.|+|+ +..|++
T Consensus 97 ~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 97 TSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175 (380)
T ss_dssp TTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred CCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE
Confidence 45677889999999999999999 999999999999999998542 22345678899999999999996 567999
Q ss_pred EecCCcEEEEECCCCcEEEeee------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-CCceEEEeccCCCCEeEE
Q 013475 208 CGYDCSSRLVDVEKGIETQSFR------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKVAHEYIQSLGPILDV 280 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~ 280 (442)
|+.|++|++||+.+++.+..+. |...|.++.|++.+.++|++|+.|+.|++||++ .++.+..+.+|.+.|.++
T Consensus 176 ~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v 255 (380)
T 3iz6_a 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255 (380)
T ss_dssp ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE
T ss_pred ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE
Confidence 9999999999999999887762 678899999988556899999999999999998 457788899999999999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc------cceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE------AYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
+|+|++++|++++. |++|++||++++..+....... ...+.+++|+|++.++++++.++.|++||..
T Consensus 256 ~~~p~~~~l~s~s~-------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 256 KFFPDGQRFGTGSD-------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EECTTSSEEEEECS-------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred EEecCCCeEEEEcC-------CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 99999999999998 9999999999987665543322 2247899999999999999999999999988
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
.......+... ...|...|.+++|+|+|++|++|+.||.|+||++...+
T Consensus 329 ~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 329 LAEMVLNLGTL-QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TCCEEEEECCS-CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCceEEEEecc-cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 76554322211 12456789999999999999999999999999987654
No 61
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-38 Score=287.88 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=205.8
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCccee--eeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLA--RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
......+|...|++++|+|+ ++ +++++.||+|+|||+.+++.... ....+|...|++++|+|++++|++++.|+.|
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d-~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v 163 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSE-KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163 (357)
T ss_dssp GCSEEEECSSCEEEEEEETT-TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred EecccCCCCCCEEEEEEcCC-CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 34455679999999999999 66 45677899999999976543332 2345799999999999999999999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe--ccCCCCEeEEEEeeC-CCEEE
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY--IQSLGPILDVEFTIN-GKQFV 290 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~ 290 (442)
++||+++++.+..+. |...|++++|++++..++++++.||.|++||+++++.+..+ ..+...+.+++|+|+ +.+|+
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 999999999999988 88999999999998778999999999999999998776554 346678999999997 56788
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
+++. |+.|++||+++++.+..+ ..+...+.+++|+|++ .+|++++.|+.|++||++.+... ....
T Consensus 244 ~g~~-------d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~------~~~~ 309 (357)
T 4g56_B 244 CGDE-------TGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF------RDLS 309 (357)
T ss_dssp EEES-------SSCEEEEESSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE------EECC
T ss_pred Eeec-------ccceeEEECCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe------EECC
Confidence 8887 999999999998766554 3456689999999987 46888999999999999876433 2224
Q ss_pred cccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCce
Q 013475 370 VSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 370 ~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
|...|++++|+| ++++|++++.||+|++||+.+..
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 567899999998 89999999999999999997643
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-38 Score=308.19 Aligned_cols=287 Identities=13% Similarity=0.182 Sum_probs=249.7
Q ss_pred cceecccccccc-eEEEEeeC--CCCCEEEEecCCCcEEEEEcccC------CcceeeeeccCCCceeEEEeCCCCCEEE
Q 013475 136 RLSTALCHHTKA-VNSINWSP--THAHLLASAGMDQSICIWNVWSR------DQKLARVLNFHSAAVNDVKWSQQGLFVL 206 (442)
Q Consensus 136 ~~~~~l~~h~~~-V~~~~~s~--~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 206 (442)
+....+.+|.+. |++++|+| + +++|++|+.||.|+|||+.++ .......+..|...|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 678889999999 99999999 9 999999999999999999654 4577778888999999999999999999
Q ss_pred EEecC----CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC---CEe
Q 013475 207 SCGYD----CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG---PIL 278 (442)
Q Consensus 207 s~~~d----~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~ 278 (442)
+++.+ +.|++|| .++.+..+. |...|.+++|+|++..++++++.|+.|++||+++++.+..+..|.. .|.
T Consensus 133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 210 (615)
T ss_dssp EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence 99987 6888888 566676766 8899999999999755899999999999999999999999999988 999
Q ss_pred EEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec---cccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 279 DVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY---VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 279 ~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
+++|+|+ +++|++++. |+.|++||+++++.+..+.. .+...+.++.|+ ++.++++++.++.|++||+.
T Consensus 211 ~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGS-------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp EEEECSTTCCEEEEEET-------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred EEEECCCCCCEEEEEeC-------CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 9999999 999999998 99999999999887776644 677889999999 99999999999999999998
Q ss_pred CCcccccceeEeec--ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 355 PPFRLDKFKRYESH--GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 355 ~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
...... .+..+ .....+..+.|+ ++++|++++.||.|++||+.+++.+..+.+|...|.+++| |+ |+++
T Consensus 283 ~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~----l~~~ 353 (615)
T 1pgu_A 283 TSKCVQ---KWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP----LISG 353 (615)
T ss_dssp TTEEEE---EEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT----TEEE
T ss_pred CCcEEE---EEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC----cEEE
Confidence 765543 22222 223557778886 8999999999999999999999999999999888988888 65 6666
Q ss_pred eCCCcEEEcC
Q 013475 433 SWNGDVSVYE 442 (442)
Q Consensus 433 ~~dg~i~iwd 442 (442)
+.||.|++||
T Consensus 354 ~~dg~i~~w~ 363 (615)
T 1pgu_A 354 SYDGRIMEWS 363 (615)
T ss_dssp ETTSCEEETT
T ss_pred CCCCeEEEEE
Confidence 6777777775
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=317.41 Aligned_cols=285 Identities=11% Similarity=0.167 Sum_probs=224.4
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
..|...|++++|+| +++|++++.|++|+|||+.++ +.+..+. |...|++++|+|++++|++|+.||+|++||+++
T Consensus 55 ~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~--~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQ--KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp CSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTC--SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT
T ss_pred cCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCC--cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 35889999999999 459999999999999999554 5666666 778999999999999999999999999999998
Q ss_pred CcEEE-----------eee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC----------------
Q 013475 222 GIETQ-----------SFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS---------------- 273 (442)
Q Consensus 222 ~~~~~-----------~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------- 273 (442)
++... .+. |...|.+++|+|++..+|++|+.||.| +||+++++.+..+..|
T Consensus 130 ~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 208 (902)
T 2oaj_A 130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNE 208 (902)
T ss_dssp TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTS
T ss_pred CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccc
Confidence 87531 112 678999999999765789999999999 9999999988888765
Q ss_pred --CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-----c------------ccceeeeE----
Q 013475 274 --LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-----V------------EAYTCPCV---- 330 (442)
Q Consensus 274 --~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----~------------~~~~~~~~---- 330 (442)
...|.+++|+|+|++|++++. |+.|++||+++++.+..... . +...|.++
T Consensus 209 ~h~~~V~~v~fspdg~~lasgs~-------Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 209 KRTPKVIQSLYHPNSLHIITIHE-------DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CBCCCEEEEEECTTSSEEEEEET-------TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred ccCCCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 467999999999999999998 99999999876543211000 0 00011111
Q ss_pred --------------------------------------------------------------------------------
Q 013475 331 -------------------------------------------------------------------------------- 330 (442)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (442)
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 013475 331 -------------------------------------------------------------------------------- 330 (442)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (442)
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc
Confidence
Q ss_pred EecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee-------cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 331 RHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES-------HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 331 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
+|+|+++++++++.|++|++||+..+.. .....+.. ..+...|.+++|+|+|++||+|+.||+|+|||+.++
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~-~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDI-QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTT-TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred cccccCcEEEEecCCCcEEEEECCCccc-cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 1234555667777777777777766521 11111110 144567999999999999999999999999999765
Q ss_pred ---------------------------------------------eeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 404 ---------------------------------------------ELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 404 ---------------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
+++..+.+|.+.|++++|+|+| +||+|+.||+|
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv 598 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSL 598 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcE
Confidence 2467788899999999999998 99999999999
Q ss_pred EEcC
Q 013475 439 SVYE 442 (442)
Q Consensus 439 ~iwd 442 (442)
+|||
T Consensus 599 ~lwd 602 (902)
T 2oaj_A 599 MLID 602 (902)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-38 Score=296.15 Aligned_cols=283 Identities=14% Similarity=0.200 Sum_probs=234.3
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCCC-
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKG- 222 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~- 222 (442)
....++++|+...++++++.||.|+||++..... .....+.+|.+.|++++|+| ++++|++++.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4456889988444555688999999999854322 34556778999999999999 9999999999999999999987
Q ss_pred ------cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe--ccCCCCEeEEEEeeCCCEEEecc
Q 013475 223 ------IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY--IQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 223 ------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
+.+..+. |...|.+++|+|++.++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5566666 89999999999997679999999999999999999999999 78999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccc-cceeeeEEecCCCCeeEEE---eCCCeEEEeeCCCCcccccceeEeecc
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVE-AYTCPCVRHHPFDPYFVAQ---SNGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
. |+.|++||+++++.+......+ ...+.++.|++++.+++++ +.++.|++||+........ .....
T Consensus 196 ~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~---~~~~~ 265 (402)
T 2aq5_A 196 R-------DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS---LQELD 265 (402)
T ss_dssp T-------TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE---EEECC
T ss_pred c-------CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce---EEecc
Confidence 8 9999999999988777663333 4458999999999999999 7999999999987654211 11223
Q ss_pred cccCcEEEEEccCCCEEE-EecCCCcEEEEecCCcee-eEeeec--cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 370 VSGFPIKCSFSLDGEKLV-SGSSDGSIYFYNCRSSEL-ERKIKA--YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~-~g~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+...+..++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++ .++++ .|+.+++|+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~-~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR-GLEVN--KCEIARFYK 339 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG-GSCGG--GTEEEEEEE
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc-cccee--cceeEEEEE
Confidence 446689999999999996 566899999999998874 555554 45899999999998 56654 577899985
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.4e-38 Score=277.84 Aligned_cols=249 Identities=14% Similarity=0.188 Sum_probs=207.2
Q ss_pred eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC--cEEEeee-CCcceEEEEEccC-CCCEEEEeeCCCcEEEE
Q 013475 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--IETQSFR-EELAVRVVKFHPE-NSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 184 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~-~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw 259 (442)
..+.+|...|++++|++++++|++|+.|++|+|||+..+ +.+..+. |...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457789999999999999999999999999999999753 5666776 8999999999863 24899999999999999
Q ss_pred ECCCCc--eEEEeccCCCCEeEEEEeeC--CCEEEeccCCCCCcCCCCeEEEEeCCCCccc-ceeeccccceeeeEEecC
Q 013475 260 DIRTGK--VAHEYIQSLGPILDVEFTIN--GKQFVSSSDVSGSNMSENSIVVWDVSREVPL-SKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 260 d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 334 (442)
|+++++ .+..+..|...|.+++|+|+ +.+|++++. |+.|++||++..... ......+...+.++.|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-------TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-------CCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence 998874 56677889999999999997 899999998 999999999876422 334456677899999999
Q ss_pred C-------------CCeeEEEeCCCeEEEeeCCCCcccc-cceeEeecccccCcEEEEEccCC---CEEEEecCCCcEEE
Q 013475 335 F-------------DPYFVAQSNGNYIAIFSSTPPFRLD-KFKRYESHGVSGFPIKCSFSLDG---EKLVSGSSDGSIYF 397 (442)
Q Consensus 335 ~-------------~~~l~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~dg~i~i 397 (442)
+ +++|++++.|+.|++||++...... ....+. .|...|.+++|+|++ ++|++++.|++|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 7 5689999999999999987654221 123333 345779999999984 89999999999999
Q ss_pred EecCCce---eeEee--eccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 398 YNCRSSE---LERKI--KAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 398 wd~~~~~---~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
||+.+.. ....+ ..|...|.+++|+|++ .+|++++.||.|+||+
T Consensus 234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 282 (297)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEE
T ss_pred EEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEE
Confidence 9998642 12233 4678899999999999 7999999999999995
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-38 Score=284.05 Aligned_cols=254 Identities=19% Similarity=0.281 Sum_probs=198.9
Q ss_pred ceecc-cc-cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccC-----CcceeeeeccCCCceeEEEeCCCCCEEEEEe
Q 013475 137 LSTAL-CH-HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSR-----DQKLARVLNFHSAAVNDVKWSQQGLFVLSCG 209 (442)
Q Consensus 137 ~~~~l-~~-h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 209 (442)
....+ .+ |.+.|++++|+|+ +++|++|+.|++|+|||+... .......+.+|...|.+++|+|++++|++++
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 44445 34 9999999999999 899999999999999998532 2356677889999999999999999999999
Q ss_pred cCCcEEEEECCCC----cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC--ceEEEeccCCCCEeEEEE
Q 013475 210 YDCSSRLVDVEKG----IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG--KVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 210 ~d~~v~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~ 282 (442)
.|++|++||+... +++..+. |...|.+++|+|++ .+|++++.|+.|++||+.++ +.+..+.+|.+.|.+++|
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence 9999999999432 4555665 88899999999996 89999999999999999876 577889999999999999
Q ss_pred eeC--CCEEEeccCCCCCcCCCCeEEEEeCCCCc--------ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEee
Q 013475 283 TIN--GKQFVSSSDVSGSNMSENSIVVWDVSREV--------PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFS 352 (442)
Q Consensus 283 ~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~ 352 (442)
+++ +.+|++++. |++|++||++... ........+...+.+++|++++ +|++++.|+.|++|+
T Consensus 206 ~~~~~~~~l~s~s~-------D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 206 DKTEGVFRLCSGSD-------DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp CCSSSSCEEEEEET-------TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred cCCCCeeEEEEEeC-------CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 998 778999998 9999999997642 1222222366789999999654 899999999999999
Q ss_pred CCCCcccccceeEeeccccc-CcEEEEEcc--CCCEEEEecCCCcEEEEecCC
Q 013475 353 STPPFRLDKFKRYESHGVSG-FPIKCSFSL--DGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~g~~l~~g~~dg~i~iwd~~~ 402 (442)
...+.... .......+.. .+.+++|+| ++++|++|+.||.|+|||+++
T Consensus 278 ~~~~~~~~--~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKV--FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEE--EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEE--EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 87542110 1111123344 688999999 789999999999999999864
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-38 Score=288.09 Aligned_cols=259 Identities=17% Similarity=0.244 Sum_probs=220.4
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC--CCEEEEEecCCc
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ--GLFVLSCGYDCS 213 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~ 213 (442)
+++..+.+|.+.|++++|+|+ +++|++|+.||.|+|||+..........+.+|...|++++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 567789999999999999999 99999999999999999976667888889999999999999987 999999999999
Q ss_pred EEEEECCCCc--EEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCc--eEEEeccCCCCEeEEEEee---
Q 013475 214 SRLVDVEKGI--ETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGPILDVEFTI--- 284 (442)
Q Consensus 214 v~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~--- 284 (442)
|++||+.+++ .+..+. |...|.+++|+|++ ..+|++++.|+.|++||++++. ....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999986 555555 88999999999982 3899999999999999998873 4456678999999999999
Q ss_pred ----------CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc---eeeccccceeeeEEecCC---CCeeEEEeCCCeE
Q 013475 285 ----------NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS---KQVYVEAYTCPCVRHHPF---DPYFVAQSNGNYI 348 (442)
Q Consensus 285 ----------~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~i 348 (442)
++.+|++++. |+.|++||++...... .....+...+.+++|+|+ +.++++++.|+.|
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGA-------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp ---------CTTCEEEEEET-------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred cccccccCCCCCCEEEEEeC-------CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 6999999998 9999999998765332 233456778999999999 8999999999999
Q ss_pred EEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 349 AIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
++||+................+...+.+++|+|+|++|++++.||.|++||+..
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999998764332223333334567799999999999999999999999999874
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-37 Score=289.57 Aligned_cols=273 Identities=19% Similarity=0.273 Sum_probs=236.3
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
+....+|...|+++.| + +++|++|+.||.|++||+.+ .+....+.+|...|.+++| ++++|++|+.||.|++|
T Consensus 126 ~~~~~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp EECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EecccCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 3344567788999988 5 78999999999999999954 4778889999999999999 78899999999999999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE---EEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA---HEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
|+.+++.+..+. |...|.+++|++ .++++|+.||.|++||+++++.. ..+.+|...|.++.| +++++++++
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 999999998887 888999999973 58999999999999999987654 677889999999999 788999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
. |+.|++||+++++.+.... .+...+.++.+ ++.++++++.|+.|++||+.++... ..+.. +...
T Consensus 274 ~-------dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~--h~~~ 338 (435)
T 1p22_A 274 G-------DRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---RVLEG--HEEL 338 (435)
T ss_dssp T-------TSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE---EEECC--CSSC
T ss_pred C-------CCeEEEEECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEE---EEEeC--CcCc
Confidence 8 9999999999987765554 45567888888 5789999999999999999987554 33333 4466
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCce---------eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE---------LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.+++| ++++|++|+.||.|++||+.+++ ++..+.+|.+.|.+++| ++ .+|++++.||.|+|||
T Consensus 339 v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 339 VRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE-FQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC
T ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEE
Confidence 888888 78999999999999999998766 78889999999999999 55 6899999999999997
No 69
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-37 Score=281.48 Aligned_cols=256 Identities=18% Similarity=0.276 Sum_probs=210.3
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
+.....+.+|...|++++|+|+ +.+|++|+.|++|+|||+.+ ......+.+|...|.+++|+|++++|++++.|++|
T Consensus 66 ~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 66 GIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRT--GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTS--SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred ccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 3456788999999999999999 99999999999999999954 46778888999999999999999999999999999
Q ss_pred EEEECCCCcEEEee---eCCcceEEEEEccCCC---------CEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEE
Q 013475 215 RLVDVEKGIETQSF---REELAVRVVKFHPENS---------NLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEF 282 (442)
Q Consensus 215 ~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 282 (442)
++||+......... .|...|.+++|+|++. .+|++++.||.|++||. ..+....+..|...|.+++|
T Consensus 143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEE
T ss_pred EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEE
Confidence 99999854433333 3778899999999852 68999999999999994 56777888999999999999
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKF 362 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 362 (442)
+|+|++|++++. |+.|++||+......... ......+.+++|+|++.+++++ .++.|++|++.+......
T Consensus 222 s~~g~~l~sgs~-------dg~v~iwd~~~~~~~~~~-~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~- 291 (343)
T 2xzm_R 222 SPNGKYIATGGK-------DKKLLIWDILNLTYPQRE-FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPV- 291 (343)
T ss_dssp CTTSSEEEEEET-------TCEEEEEESSCCSSCSEE-EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSE-
T ss_pred CCCCCEEEEEcC-------CCeEEEEECCCCccccee-ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCce-
Confidence 999999999998 999999999544332222 2234569999999999877654 577899999976543321
Q ss_pred eeEe---------ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 363 KRYE---------SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 363 ~~~~---------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
..+. ...+...+.+++|+|+|++|++|+.||.|++|++.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 292 CTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 0111 01345668999999999999999999999999987653
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.1e-37 Score=289.33 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=243.8
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
.++.+..+.+|.+.|++++|+ +++|++|+.||+|++||+.+ .+....+.+|...|.++.|+ +++|++++.||.
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 220 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDAT 220 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence 467788899999999999998 45899999999999999954 47788889999999999995 568999999999
Q ss_pred EEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec
Q 013475 214 SRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (442)
|++||+.+++.+..+. |...|.++.| ++ .++++|+.||.|++||+++++.+..+..|...|.++.| ++.+++++
T Consensus 221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 295 (445)
T 2ovr_B 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG 295 (445)
T ss_dssp EEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEE
T ss_pred EEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEE
Confidence 9999999999998887 8899999999 43 78999999999999999999999999999999999999 88999999
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec-ccc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH-GVS 371 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~ 371 (442)
+. |+.|++||+++++.+.... .+...+.++.+ ++.++++++.|+.|++||+.+.... ..+..+ .+.
T Consensus 296 ~~-------d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~ 362 (445)
T 2ovr_B 296 SL-------DTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL---QTLQGPNKHQ 362 (445)
T ss_dssp ET-------TSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE---EEECSTTSCS
T ss_pred eC-------CCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE---EEEccCCCCC
Confidence 98 9999999999987765543 34445666665 5779999999999999999876554 333322 245
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEee-----eccCCceeEEEEcCCCCCEEEEeeCCCc----EEEcC
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKI-----KAYEQACIDVAFHPILPNIIGSCSWNGD----VSVYE 442 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~s~~~dg~----i~iwd 442 (442)
..+.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|++ .+|++++.||+ |.|||
T Consensus 363 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 363 SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEE
T ss_pred CCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-EEEEEcccCCCCccEEEEEE
Confidence 678888885 689999999999999999999998888 4678899999999998 79999999998 99986
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-37 Score=285.63 Aligned_cols=243 Identities=19% Similarity=0.288 Sum_probs=209.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
...|++++|+|+ +++|++|+.||.|+|||+.+ .+....+.+|...|.+++|+|++++|++++.|++|++||+.++++
T Consensus 123 ~~~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 123 DLYIRSVCFSPD-GKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CCBEEEEEECTT-SSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceeEEEEEECCC-CCEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 345999999999 99999999999999999954 477888999999999999999999999999999999999999999
Q ss_pred EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-------ccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 225 TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-------IQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
...+.+...+.+++|+|.+..+|++|+.|+.|++||+++++.+..+ .+|...|.+++|++++++|++++.
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--- 276 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL--- 276 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET---
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC---
Confidence 9988888999999999944589999999999999999999887766 578889999999999999999998
Q ss_pred CcCCCCeEEEEeCCCCccc-----------ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 298 SNMSENSIVVWDVSREVPL-----------SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
|+.|++||+++.... ......+...+.++++++++.+|++++.|+.|++||..++... ..+.
T Consensus 277 ----d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~---~~l~ 349 (393)
T 1erj_A 277 ----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL---LMLQ 349 (393)
T ss_dssp ----TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE---EEEE
T ss_pred ----CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEEC
Confidence 999999999864321 1122345667899999999999999999999999999887654 3444
Q ss_pred ecccccCcEEEEEcc------CCCEEEEecCCCcEEEEecCC
Q 013475 367 SHGVSGFPIKCSFSL------DGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~------~g~~l~~g~~dg~i~iwd~~~ 402 (442)
+ |...|.+++|++ ++++|++|+.||.|+||++..
T Consensus 350 ~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 350 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred C--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 4 446788999876 688999999999999999864
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-36 Score=288.70 Aligned_cols=281 Identities=19% Similarity=0.234 Sum_probs=239.4
Q ss_pred cceecccccccce-EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 136 RLSTALCHHTKAV-NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 136 ~~~~~l~~h~~~V-~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
.....+.+|.+.| +++.|+ +++|++|+.||+|++||+.+ .+.+..+.+|.+.|.+++|++++ +|++++.||+|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 3556889999885 666664 66999999999999999944 57888899999999999999988 99999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccC-CCCEEEEeeCCCcEEEEECCCCce-----------------------EEE
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPE-NSNLFLSGGSKGLLRLWDIRTGKV-----------------------AHE 269 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~ 269 (442)
++||+++++.+..+. |...|.+++|++. +..+|++++.||.|++||++++.. +..
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 999999999999888 8999999999852 248999999999999999987652 456
Q ss_pred eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEE
Q 013475 270 YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIA 349 (442)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 349 (442)
+.+|...|.++ +++++++++++. |+.|++||+++++.+... ..+...+.++.|++++.++++++.|+.|+
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~-------d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSY-------DNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEET-------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccCccceEEEE--cCCCCEEEEEeC-------CCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 67788888776 678999999998 999999999988766554 34667899999999999999999999999
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
+||+.++... ..+.. +...+.++.|+ +++|++++.||.|++||+.+++....+. |...+..++|++++ .+|
T Consensus 336 vwd~~~~~~~---~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l 406 (464)
T 3v7d_B 336 IWDLENGELM---YTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD-NIL 406 (464)
T ss_dssp EEETTTTEEE---EEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS-SEE
T ss_pred EEECCCCcEE---EEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC-CEE
Confidence 9999887544 33333 44678889887 6899999999999999999887666554 57778889999998 799
Q ss_pred EEeeCCCcEEEcC
Q 013475 430 GSCSWNGDVSVYE 442 (442)
Q Consensus 430 ~s~~~dg~i~iwd 442 (442)
++++ ||.|+|||
T Consensus 407 ~~~~-dg~i~iwd 418 (464)
T 3v7d_B 407 VSGS-ENQFNIYN 418 (464)
T ss_dssp EEEE-TTEEEEEE
T ss_pred EEec-CCeEEEEE
Confidence 9988 99999997
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.1e-37 Score=274.07 Aligned_cols=250 Identities=18% Similarity=0.225 Sum_probs=218.4
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRL 258 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 258 (442)
..+...+.+|...|++++|+|++++|++++.|+.|++|++.+++....+. |...|.+++|+|++ ++|++++.|+.|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~v 91 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEE
Confidence 45677788999999999999999999999999999999999999888887 88899999999996 89999999999999
Q ss_pred EECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCe
Q 013475 259 WDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (442)
||+++++.+..+.+|...|.++.|+|++++|++++. |+.|++||+++++.+... ..+...+.++.|++++.+
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-------DESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSL 163 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCE
Confidence 999999999999999999999999999999999998 999999999988765444 345668999999999999
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCcee-
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACI- 417 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 417 (442)
+++++.|+.|++||+........ +. ..+...+..++|+|++++|++++.||.|++||+.+++++..+.+|...+.
T Consensus 164 l~~~~~d~~i~~wd~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 239 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTASGQCLKT---LI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE---EC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSC
T ss_pred EEEEeCCCcEEEEECCCCceeeE---Ee-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEE
Confidence 99999999999999987654322 11 22345678899999999999999999999999999999999988866443
Q ss_pred -EEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 418 -DVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 418 -~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...|++.++.+|++++.||.|++||
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 3345543337999999999999997
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-37 Score=283.47 Aligned_cols=290 Identities=15% Similarity=0.162 Sum_probs=219.9
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccCCCceeEEEeCC--CCCEEEEEecCCc
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYDCS 213 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d~~ 213 (442)
...+.+|.+.|++++|+|+ +++|++|+.||.|+|||+.+... .....+.+|...|.+++|++ ++++|++++.||.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 3567899999999999999 99999999999999999965432 46677788999999999999 6999999999999
Q ss_pred EEEEECCCC---------cEEEeee-CCcceEEEEEccC--CCCEEEEeeCCCcEEEEECCCCceEEEec----------
Q 013475 214 SRLVDVEKG---------IETQSFR-EELAVRVVKFHPE--NSNLFLSGGSKGLLRLWDIRTGKVAHEYI---------- 271 (442)
Q Consensus 214 v~vwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------- 271 (442)
|++||++++ +.+..+. |...|.+++|+|+ + .+|++++.||.|++||+++++.+..+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 999999887 4455555 8899999999998 6 899999999999999998876443322
Q ss_pred ---cCCCCEeEEEEeeC---CCEEEeccCCCCCcCCCCeEEEEeCCCCccc-ceeeccccceeeeEEecCCC----CeeE
Q 013475 272 ---QSLGPILDVEFTIN---GKQFVSSSDVSGSNMSENSIVVWDVSREVPL-SKQVYVEAYTCPCVRHHPFD----PYFV 340 (442)
Q Consensus 272 ---~~~~~i~~~~~~~~---~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~l~ 340 (442)
.+...+.++.|+|+ +.++++++. ++.+.+|+...+... ......+...+.++.|+|++ .+|+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSAL-------EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEET-------TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecC-------CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 56778999999997 999999998 999988887776542 22333567789999999998 8999
Q ss_pred EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe----cCCCcEEEEecCCceeeEeeeccCCce
Q 013475 341 AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG----SSDGSIYFYNCRSSELERKIKAYEQAC 416 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~v 416 (442)
+++.|+.|++||+.......... ..........+++....+..+ .....+.+|+....+.+..+.+|...|
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 309 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASE-----ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309 (351)
T ss_dssp EEETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred EEcCCCeEEEEeCCCCcCccccC-----CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence 99999999999998654332111 111112233334444444433 345567777777788899999999999
Q ss_pred eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 417 IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 417 ~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++++|+|++ .+|++++.||.|+|||
T Consensus 310 ~~~~~s~~~-~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 310 WSVSWNLTG-TILSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEECSSS-CCEEEEETTSCEEEEE
T ss_pred EEEEEcCCC-CEEEEecCCCcEEEEe
Confidence 999999998 7999999999999996
No 75
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-37 Score=328.90 Aligned_cols=296 Identities=17% Similarity=0.238 Sum_probs=254.5
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC--CCCEEEEEecC
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ--QGLFVLSCGYD 211 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~d 211 (442)
.++.+..+.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+ .+.+..+.+|...|.+++|++ ++.++++++.|
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d 722 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred CCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence 45678889999999999999999 99999999999999999954 478888899999999999999 56689999999
Q ss_pred CcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe--------------------
Q 013475 212 CSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-------------------- 270 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------- 270 (442)
+.|++||+.+++++..+. |...|++++|+|++ .+|++++.||.|++||+++++....+
T Consensus 723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1249)
T 3sfz_A 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801 (1249)
T ss_dssp SCEEEEETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred CeEEEEECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence 999999999999988887 88999999999996 89999999999999999876543332
Q ss_pred -----------------------------------ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc
Q 013475 271 -----------------------------------IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP 315 (442)
Q Consensus 271 -----------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 315 (442)
.+|...|.+++|+|++.++++++. |+.|++||+.++..
T Consensus 802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-------QYCVELWNIDSRLK 874 (1249)
T ss_dssp CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-------SSCEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCce
Confidence 156778999999999999999998 99999999998776
Q ss_pred cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc--------------------------ceeEee--
Q 013475 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK--------------------------FKRYES-- 367 (442)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~--------------------------~~~~~~-- 367 (442)
+... ..+...+.++.|+|++.++++++.|+.|++|+......... +.....
T Consensus 875 ~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1249)
T 3sfz_A 875 VADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953 (1249)
T ss_dssp EEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESS
T ss_pred eeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCc
Confidence 5444 35667899999999999999999999999999653211100 000000
Q ss_pred ----cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 368 ----HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 368 ----~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
......+.+++|+|+|+++++|+.+|.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|++||
T Consensus 954 ~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEE
T ss_pred ceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEE
Confidence 1123458899999999999999999999999999999999999999999999999999 7999999999999996
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-36 Score=288.64 Aligned_cols=282 Identities=18% Similarity=0.254 Sum_probs=239.0
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeC--CCCCEEEEEecC
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWS--QQGLFVLSCGYD 211 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~d 211 (442)
.++.+..+.+|.+.|++++|+++ + +|++|+.||+|++||+.+ ......+.+|...|.+++|+ +++.+|++++.|
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred CCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence 46778889999999999999998 5 899999999999999954 47788899999999999998 578999999999
Q ss_pred CcEEEEECCCCcEE-----------------------Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE
Q 013475 212 CSSRLVDVEKGIET-----------------------QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267 (442)
Q Consensus 212 ~~v~vwd~~~~~~~-----------------------~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (442)
+.|++||+.++... ..+. |...+.++ ++++ .++++++.||.|++||+++++.+
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~ 303 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL 303 (464)
T ss_dssp SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE
T ss_pred CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999887532 2333 66677776 4554 89999999999999999999999
Q ss_pred EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCe
Q 013475 268 HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY 347 (442)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (442)
..+.+|...|.+++|+++++++++++. |+.|++||+++++.+.... .+...+.++.++ +.++++++.|+.
T Consensus 304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 304 YILSGHTDRIYSTIYDHERKRCISASM-------DTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEET-------TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 999999999999999999999999998 9999999999987765544 456688889987 689999999999
Q ss_pred EEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEe-eeccCCceeEEEEcCCCC
Q 013475 348 IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERK-IKAYEQACIDVAFHPILP 426 (442)
Q Consensus 348 i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~ 426 (442)
|++||+.+...... . .+...+..++|++++++|++|+ ||.|++||+.+++++.. +..|...|.+++|+.+
T Consensus 374 v~vwd~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~-- 444 (464)
T 3v7d_B 374 IRGWDANDYSRKFS-----Y-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 444 (464)
T ss_dssp EEEEETTTCCEEEE-----E-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT--
T ss_pred EEEEECCCCceeee-----e-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC--
Confidence 99999987653321 1 1334566789999999999998 89999999999999886 6678999999999843
Q ss_pred CEEEEeeCCCcEEEc
Q 013475 427 NIIGSCSWNGDVSVY 441 (442)
Q Consensus 427 ~~l~s~~~dg~i~iw 441 (442)
.++++++.||.+.+|
T Consensus 445 ~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 445 TLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEEEeCCeEEEE
Confidence 577777888876655
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-36 Score=297.91 Aligned_cols=295 Identities=16% Similarity=0.210 Sum_probs=240.9
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCC---ceeEEEeCCC-CCEEEEEe
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSA---AVNDVKWSQQ-GLFVLSCG 209 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~~~~-~~~l~s~~ 209 (442)
.++.+..+.+|.+.|++++|+|++..+|++++.|+.|++||+ ...+....+.+|.. .|.+++|+|+ +++|++++
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG--PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET--TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC--CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 345678889999999999999993348999999999999998 44578888889999 9999999999 99999999
Q ss_pred cCCcEEEEECCCCcEEEee-----eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC----CCCEeEE
Q 013475 210 YDCSSRLVDVEKGIETQSF-----REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS----LGPILDV 280 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~ 280 (442)
.|+.|++||+.+++.+..+ .|...|.+++|+ ++ .+|++++.|+.|++||+++++.+..+..+ ...+.++
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 9999999999999999998 788999999999 74 89999999999999999999998888776 3678888
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec--------------------------------cccceee
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY--------------------------------VEAYTCP 328 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~~~ 328 (442)
.|. ++.++++++. |+.|++||+.+++.+..... .+...+.
T Consensus 305 ~~~-~~~~l~~~~~-------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~ 376 (615)
T 1pgu_A 305 VAT-GNGRIISLSL-------DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIV 376 (615)
T ss_dssp EEE-ETTEEEEEET-------TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred EeC-CCCeEEEEEC-------CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceE
Confidence 886 8899999998 99999999987554433221 1223344
Q ss_pred eEEecCCCCeeEEEeCCCeEEEeeCCCCcc--------------------------------------------------
Q 013475 329 CVRHHPFDPYFVAQSNGNYIAIFSSTPPFR-------------------------------------------------- 358 (442)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-------------------------------------------------- 358 (442)
++.| +++..+++++.++.+++|++.....
T Consensus 377 ~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (615)
T 1pgu_A 377 SLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS 455 (615)
T ss_dssp EEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence 4444 3355666666666666666532110
Q ss_pred ---------------cccce---e--EeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec-cCCcee
Q 013475 359 ---------------LDKFK---R--YESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA-YEQACI 417 (442)
Q Consensus 359 ---------------~~~~~---~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~v~ 417 (442)
+..+. . .....+...+.+++|+|+|++|++++.||.|++||+.+++++..+.+ |...|+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCcee
Confidence 00000 0 12233557799999999999999999999999999999999999988 999999
Q ss_pred EEEEcC----------CCCCEEEEeeCCCcEEEcC
Q 013475 418 DVAFHP----------ILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 418 ~~~~~p----------~~~~~l~s~~~dg~i~iwd 442 (442)
+++|+| ++ .+|++++.||.|+|||
T Consensus 536 ~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYS 569 (615)
T ss_dssp EEEECCCC------CCSC-CEEEEEETTSCEEEEE
T ss_pred EEEEcCccccccccccCC-CEEEEEcCCCcEEEEE
Confidence 999999 88 7999999999999996
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=314.25 Aligned_cols=204 Identities=11% Similarity=0.151 Sum_probs=176.7
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
..+|.+.|++++|+|+ +++||+|+.||+|+||+... ......+. |...|.+++|++ +++|++++.|++|++||+.
T Consensus 13 ~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~--~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQ--VEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTT--CEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCC--cEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 4589999999999999 99999999999999999843 34444444 888999999999 8899999999999999999
Q ss_pred CCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE-----------EEeccCCCCEeEEEEeeC-CCE
Q 013475 221 KGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA-----------HEYIQSLGPILDVEFTIN-GKQ 288 (442)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~ 288 (442)
+++++..+.+...|++++|+|++ .+|++|+.||.|++||+++++.. ..+.+|.+.|.+++|+|+ +..
T Consensus 88 ~~~~~~~~~~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 88 SQKVLTTVFVPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp TCSEEEEEECSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CCcEEEEEcCCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 99999999888999999999996 89999999999999999987753 233568899999999996 578
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeecc-----------------ccceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-----------------EAYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
+++++. |+.| +||+++++.+..+... +...+.+++|+|++.+|++++.|+.|++|
T Consensus 167 l~~g~~-------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 167 VLISYE-------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp EEEECS-------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEeC-------CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 888888 9999 9999988766554322 23569999999999999999999999999
Q ss_pred eCCCCcc
Q 013475 352 SSTPPFR 358 (442)
Q Consensus 352 ~~~~~~~ 358 (442)
|+.++..
T Consensus 239 d~~~g~~ 245 (902)
T 2oaj_A 239 DANSGHM 245 (902)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9977543
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-36 Score=282.39 Aligned_cols=275 Identities=19% Similarity=0.312 Sum_probs=236.9
Q ss_pred cceecccccccce-EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 136 RLSTALCHHTKAV-NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 136 ~~~~~l~~h~~~V-~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
+....+.+|.+.| +++.+ + +++|++|+.||+|++||+.+ .+....+.+|...|.+++|+ +++|++++.||+|
T Consensus 109 ~~~~~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp CCCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred ceeEEecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 3456789999875 55554 5 78999999999999999954 47788899999999999997 5699999999999
Q ss_pred EEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 215 RLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
++||+.+++.+..+. |...|.++.|++ ..+++|+.||.|++||+++++.+..+..|...|.++.| +++++++++
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 999999999998888 888999999963 67999999999999999999999999999999999998 788999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 294 DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
. |+.|++||+++++.+.... .+...+.++.+ ++.++++++.|+.|++||+.+.... ..+.. +...
T Consensus 257 ~-------dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~--~~~~ 321 (445)
T 2ovr_B 257 Y-------DFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI---HTLTG--HQSL 321 (445)
T ss_dssp T-------TSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE---EEECC--CCSC
T ss_pred C-------CCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE---EEEcC--Cccc
Confidence 8 9999999999887665543 45567888888 8899999999999999999887654 33333 3355
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec---cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA---YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.++.+ ++++|++|+.||.|++||+.+++.+..+.. |...|.+++|++ .+|++++.||.|+|||
T Consensus 322 v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 322 TSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEE
T ss_pred EEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEE
Confidence 666655 577999999999999999999999999886 788999999963 5999999999999996
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=289.17 Aligned_cols=270 Identities=11% Similarity=0.035 Sum_probs=206.9
Q ss_pred CCcceecccccccceEEEEeeCCCC---------CEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHA---------HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
..+...++. +.+.|++|+|+|+ + ++||+|+.++.. -..+|+++.
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~-~~~~~~~~~~~~LAv~~~~~~~-------------------------~~~~~~~~~ 175 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNI-EENTDIGKDIQYLAVAVSQYMD-------------------------EPLNEHLEM 175 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEE-CCCCSSCSSEEEEEEEEEC-------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEeccc-CCCCccCcCCeEEEEEEecccC-------------------------Cccchhhhh
Confidence 344555555 6899999999998 4 799999866420 013689999
Q ss_pred EEEEecCCcEEEEECCCCcEE----Eeee-CCcceEEEEEccCC-----CCEEEEeeCCCcEEEEECCCCce--------
Q 013475 205 VLSCGYDCSSRLVDVEKGIET----QSFR-EELAVRVVKFHPEN-----SNLFLSGGSKGLLRLWDIRTGKV-------- 266 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~----~~~~-~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~-------- 266 (442)
|++++.|++|+|||+.+++.. ..+. +.+.|.+++|+|++ ..+|++++.||+|++||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 999999999999999887642 2344 57889999999962 36999999999999999986532
Q ss_pred ---EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeE--EecCCC-CeeE
Q 013475 267 ---AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCV--RHHPFD-PYFV 340 (442)
Q Consensus 267 ---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~l~ 340 (442)
...+.+|...|.+++|+++ ..|++|+. ||+|++||++++.........|...|.++ .+++++ .+|+
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~-------DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSP-TTVVCGFK-------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSS-SEEEEEET-------TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred cCceEEEEcCCCCEEEEEecCC-CeEEEEeC-------CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 2467789999999999976 48999998 99999999997654444455677789998 578887 8899
Q ss_pred EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEE
Q 013475 341 AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVA 420 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 420 (442)
+++.|++|++||+++.... ..+.++.....+.+++|+|+++.|++++.|++|++||++++.++..+.+|.+.|++|+
T Consensus 328 S~S~D~tvklWD~~~~~~~---~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATT---KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHH---CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcc---cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEE
Confidence 9999999999999876543 3344443333478899999999999999999999999999998889999999999999
Q ss_pred EcCCCCCEEEEeeCCCcEEEcC
Q 013475 421 FHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+|++ .+|++|+.||+|+|||
T Consensus 405 ~Sp~g-~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 405 VSRLH-PMVLAGSADGSLIITN 425 (524)
T ss_dssp CCSSC-CBCEEEETTTEEECCB
T ss_pred eCCCC-CeEEEEECCCEEEEEe
Confidence 99999 6999999999999997
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=273.68 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=212.1
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC--CCcEEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE--KGIETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLL 256 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i 256 (442)
.++..+.+|...|++++|++++++|++++.||.|++||+. +++.+..+. |...|++++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3456788899999999999999999999999999999998 556666666 88999999998761 3899999999999
Q ss_pred EEEECCCCc--eEEEeccCCCCEeEEEEeeC--CCEEEeccCCCCCcCCCCeEEEEeCCCCcccce-eeccccceeeeEE
Q 013475 257 RLWDIRTGK--VAHEYIQSLGPILDVEFTIN--GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK-QVYVEAYTCPCVR 331 (442)
Q Consensus 257 ~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~ 331 (442)
++||+++++ .+..+..|...|.+++|+|+ +.+|++++. |+.|++||++....... ....+...+.++.
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-------DGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-------TSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-------CCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 999999987 67788889999999999999 999999998 99999999998754333 3445677899999
Q ss_pred ecC-------------CCCeeEEEeCCCeEEEeeCCCCccccc-ceeEeecccccCcEEEEEccC---CCEEEEecCCCc
Q 013475 332 HHP-------------FDPYFVAQSNGNYIAIFSSTPPFRLDK-FKRYESHGVSGFPIKCSFSLD---GEKLVSGSSDGS 394 (442)
Q Consensus 332 ~~~-------------~~~~l~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~ 394 (442)
|+| ++.++++++.|+.|++||++....... ...+. .+...|.+++|+|+ +++|++++.||.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 999 699999999999999999986543321 12233 34577999999999 899999999999
Q ss_pred EEEEecCCce-----eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 395 IYFYNCRSSE-----LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 395 i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+|||+.+++ .+.....|...|++++|+|++ .+|++++.||.|+|||
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 284 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEE
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEe
Confidence 9999998863 222333478899999999999 7999999999999996
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=294.85 Aligned_cols=253 Identities=17% Similarity=0.240 Sum_probs=212.0
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.....+.+|...|++++|+|+ +++|++|+.||+|+|||+.+ ......+.+|...|.+++|+|++++|++++.|++|+
T Consensus 421 ~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 421 VAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 345678999999999999999 99999999999999999954 477788889999999999999999999999999999
Q ss_pred EEECCCCcEEEee----eCCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 216 LVDVEKGIETQSF----REELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 216 vwd~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
+||+......... .|...|.+++|+|++ ..+|++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|+
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 9998765443332 267789999999985 35899999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE-----
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY----- 365 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~----- 365 (442)
+++. |+.|++||+++++.+.... ....+.+++|+|++.+++++. ++.|++||+.+......+...
T Consensus 578 sg~~-------Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 647 (694)
T 3dm0_A 578 SGGK-------DGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA 647 (694)
T ss_dssp EEET-------TSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---
T ss_pred EEeC-------CCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc
Confidence 9998 9999999999987665443 345789999999988777665 566999999887654322110
Q ss_pred ---------eecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 366 ---------ESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 366 ---------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
....+...+++++|+|+|++|++|+.||.|+|||+.
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 648 EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 001112246789999999999999999999999985
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-35 Score=272.51 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=213.2
Q ss_pred Ccceecccc-cccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 135 GRLSTALCH-HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~-h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
++....+.. |.+.|++++|+|+ +++|++|+.||.|++||+.+ .+....+.+|...|.+++| ++++|++++.||.
T Consensus 123 ~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 197 (401)
T 4aez_A 123 GSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGA 197 (401)
T ss_dssp CCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCC
Confidence 344444444 8999999999999 99999999999999999954 4777888899999999999 5679999999999
Q ss_pred EEEEECC-CCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC-EEE
Q 013475 214 SRLVDVE-KGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK-QFV 290 (442)
Q Consensus 214 v~vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 290 (442)
|++||++ .+..+..+. |...|.+++|+|++ .+|++|+.||.|++||+++++.+..+..|...|.+++|+|++. +++
T Consensus 198 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~ 276 (401)
T 4aez_A 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276 (401)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEE
T ss_pred EEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEE
Confidence 9999999 455566666 89999999999985 8999999999999999999999999999999999999999764 555
Q ss_pred ecc--CCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE--EeCCCeEEEeeCCCCcccccceeEe
Q 013475 291 SSS--DVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA--QSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 291 ~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
+++ . |+.|++||++++..+.... +...+.++.|+|+++++++ |+.++.|++|++...... ....
T Consensus 277 ~~~gs~-------d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~---~~~~ 344 (401)
T 4aez_A 277 TGGGTM-------DKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT---KQVD 344 (401)
T ss_dssp EECCTT-------TCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE---EEEE
T ss_pred EecCCC-------CCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce---eEEE
Confidence 543 5 9999999999887766553 4567999999999999999 458999999999875433 2222
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
...+...|.+++|+|+|++|++++.||.|++||+.+++.+....
T Consensus 345 ~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 345 IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 23455779999999999999999999999999999988776543
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=274.19 Aligned_cols=283 Identities=10% Similarity=0.030 Sum_probs=229.4
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-ceeeeec------------------------------------
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-KLARVLN------------------------------------ 187 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------------------------------------ 187 (442)
..+|.+++|+++ |++|+++ .++.|++||+.++.. ..+..+.
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 457899999999 7877666 478999999976641 0222222
Q ss_pred ------------------cCCCceeEEEeCCCCCEE-EEEecCCcEEEEECC--CCcEEEeee---CCcceEEEEEccCC
Q 013475 188 ------------------FHSAAVNDVKWSQQGLFV-LSCGYDCSSRLVDVE--KGIETQSFR---EELAVRVVKFHPEN 243 (442)
Q Consensus 188 ------------------~h~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~~--~~~~~~~~~---~~~~v~~~~~~~~~ 243 (442)
.|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. +...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 344479999999999996 888899999999999 888887774 67889999999996
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEE----EeccCCCCEeEEEEeeC---CCEEEeccCCCCCcCCCCeEEEEeCCCCccc
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGKVAH----EYIQSLGPILDVEFTIN---GKQFVSSSDVSGSNMSENSIVVWDVSREVPL 316 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~ 316 (442)
.+|++++.+|.|++|++.+++... .+.+|...|.+++|+|+ +++|++++. |+.|++||++++..+
T Consensus 162 -~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 162 -TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-------DEHIKISHYPQCFIV 233 (450)
T ss_dssp -SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-------TSCEEEEEESCTTCE
T ss_pred -CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-------CCcEEEEECCCCcee
Confidence 899999999999999998876543 67789999999999999 999999998 999999999988877
Q ss_pred ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe--------------------ecccccCcEE
Q 013475 317 SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE--------------------SHGVSGFPIK 376 (442)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------------------~~~~~~~v~~ 376 (442)
......+...+.+++|+ ++.+|++++.|+.|++||+.++.....+.... .......+..
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 66666778899999999 99999999999999999999876543322100 0022345789
Q ss_pred EEEccCCCEEEEec-CCCcEEEEec--CCc---eeeEeeeccCCceeEEEEcCCCCCEEEEeeC-------CCcEEEc
Q 013475 377 CSFSLDGEKLVSGS-SDGSIYFYNC--RSS---ELERKIKAYEQACIDVAFHPILPNIIGSCSW-------NGDVSVY 441 (442)
Q Consensus 377 ~~~s~~g~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------dg~i~iw 441 (442)
++|+|++++|++++ .++.|+||++ .++ +.+..+..| ..|.+++|+|++ ++++.+. +..|.||
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEE
Confidence 99999999999998 8999999999 555 777788887 889999999964 5555432 4557777
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.4e-35 Score=276.32 Aligned_cols=251 Identities=19% Similarity=0.248 Sum_probs=210.7
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc--------CCcceeeeeccCCCceeEEEeCCCCC-EEEEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS--------RDQKLARVLNFHSAAVNDVKWSQQGL-FVLSC 208 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~ 208 (442)
...+.+|.+.|++++|+|+++++|++++.||.|+||++.. +.......+.+|...|++++|++++. +|+++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3556789999999999997678999999999999999965 22466777888999999999999988 99999
Q ss_pred ecCCcEEEEECCCCcE-------EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC---ceEEEeccCCCCE
Q 013475 209 GYDCSSRLVDVEKGIE-------TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG---KVAHEYIQSLGPI 277 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i 277 (442)
+.||.|++||+.++.. ...+. |...|.+++|+|++..+|++++.||.|++||++++ +.+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999988422 23343 78899999999966799999999999999999987 5677788899999
Q ss_pred eEEEEeeCCC-EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC
Q 013475 278 LDVEFTINGK-QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 278 ~~~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 356 (442)
++++|+|++. +|++++. |+.|++||++......
T Consensus 281 ~~i~~~p~~~~~l~tg~~-------dg~v~vwd~~~~~~~~--------------------------------------- 314 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA-------DKTVALWDLRNLKLKL--------------------------------------- 314 (430)
T ss_dssp EEEEECSSCTTEEEEEET-------TSEEEEEETTCTTSCS---------------------------------------
T ss_pred EEEEeCCCCCCEEEEEeC-------CCeEEEEeCCCCCCCe---------------------------------------
Confidence 9999999987 6888888 9999999998743211
Q ss_pred cccccceeEeecccccCcEEEEEccCCC-EEEEecCCCcEEEEecCC--------------ceeeEeeeccCCceeEEEE
Q 013475 357 FRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVSGSSDGSIYFYNCRS--------------SELERKIKAYEQACIDVAF 421 (442)
Q Consensus 357 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~ 421 (442)
..+.. +...|.+++|+|+++ +|++++.||.|+|||+.. .+++..+.+|...|++++|
T Consensus 315 ------~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 315 ------HSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp ------EEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred ------EEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence 11222 235688899999885 688899999999999876 3567777889999999999
Q ss_pred cCCCCCEEEEeeCCCcEEEcC
Q 013475 422 HPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 422 ~p~~~~~l~s~~~dg~i~iwd 442 (442)
+|+++.+|++++.||.|+||+
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred CCCCCCEEEEEECCCCEEEeE
Confidence 999955999999999999996
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.6e-35 Score=264.34 Aligned_cols=257 Identities=19% Similarity=0.270 Sum_probs=215.2
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSS 214 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v 214 (442)
..+...+.+|.+.|++++|+|+ +++|++|+.|+.|++|+... .........+...+..+.+++++.+|++++.|+.+
T Consensus 76 ~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 76 GIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTT--GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred ceeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecc--cceeeeecCCCCceeEEEEeecCccceeecCCCeE
Confidence 3456788999999999999999 99999999999999999844 46666667788899999999999999999999999
Q ss_pred EEEECCCCcEEEeee--CCcceEEEEEccCCC-CEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEe
Q 013475 215 RLVDVEKGIETQSFR--EELAVRVVKFHPENS-NLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
++||+.......... |...+..++|++++. .++++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++
T Consensus 153 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 999998765544332 788999999988753 56789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccccee----Eee
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKR----YES 367 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~----~~~ 367 (442)
++. |+.|++||+++.+.+.... ....+.++.++|++. +++++.|+.|++||++.......+.. ...
T Consensus 233 ~s~-------Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 302 (340)
T 4aow_A 233 GGK-------DGQAMLWDLNEGKHLYTLD--GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302 (340)
T ss_dssp EET-------TCEEEEEETTTTEEEEEEE--CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC------
T ss_pred EeC-------CCeEEEEEeccCceeeeec--CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeec
Confidence 998 9999999999887765544 345688999999765 55666799999999987655432221 122
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
..+...|++++|+|+|++|++|+.||.|+|||+.+|+
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 3456779999999999999999999999999999875
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-35 Score=270.42 Aligned_cols=246 Identities=19% Similarity=0.196 Sum_probs=210.2
Q ss_pred cccceEEEEeeCCC---CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEEC
Q 013475 144 HTKAVNSINWSPTH---AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 144 h~~~V~~~~~s~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~ 219 (442)
|...|++++|+|++ +++|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 66889999999983 45899999999999999954 477788889999999999999 8999999999999999999
Q ss_pred CCCcEEEee----eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec------------------------
Q 013475 220 EKGIETQSF----REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI------------------------ 271 (442)
Q Consensus 220 ~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------ 271 (442)
.+++.+..+ .|...|.+++|+|++ .+|++++.||.|++||+++++....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred ecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 999998887 388999999999986 899999999999999998775543333
Q ss_pred ----cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc-------------ceeeccccceeeeEEecC
Q 013475 272 ----QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL-------------SKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 272 ----~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 334 (442)
.|...|.+++|+ +++|++++. |+.|++||+++.... ......+...+.++.|+|
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILSKSC-------ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEEECS-------SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred ccccCCcceEEEEEEc--CCEEEEEec-------CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence 388999999998 789999998 999999999876431 122234455788899999
Q ss_pred C--CCeeEEEeCCCeEEEeeCCCCcccc-cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 335 F--DPYFVAQSNGNYIAIFSSTPPFRLD-KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 335 ~--~~~l~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+ +.+|++++.++.|++||+....... ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9 9999999999999999999876543 33455666557889999999999999999999999999985
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4e-35 Score=270.89 Aligned_cols=247 Identities=14% Similarity=0.163 Sum_probs=200.3
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
+.+|.+.|++++|+|+++++|++++.|+.|++||+.+...........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 3479999999999994489999999999999999964322222222345588999999999999999999999999999
Q ss_pred CCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----CceEEEeccCCCCEeEEEEee-CCCEEEeccC
Q 013475 221 KGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----GKVAHEYIQSLGPILDVEFTI-NGKQFVSSSD 294 (442)
Q Consensus 221 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 294 (442)
+++.+..+. |...|.+++|+|++..+|++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++++|++++.
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 466677776 8999999999999755999999999999999997 5566666 6889999999999 9999999998
Q ss_pred CCCCcCCCCeEEEEeCCCCcccceeeccc------c----------ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 295 VSGSNMSENSIVVWDVSREVPLSKQVYVE------A----------YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
|+.|++||+++........... . ..+..+.++|++++ +++.|+.|++||+.++..
T Consensus 272 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 272 -------RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp -------SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred -------CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 9999999999877655443221 1 23334566666666 677899999999988765
Q ss_pred cccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 359 LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
+ ..+..+.+...+..++|+|+|++|++|+ ||.|+|||+++
T Consensus 343 ~---~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 343 V---HQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp E---EEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred e---eeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4 4455555566677789999999999997 99999999864
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=296.11 Aligned_cols=257 Identities=17% Similarity=0.245 Sum_probs=215.5
Q ss_pred eecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC--CCEEEEEecCCcEE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ--GLFVLSCGYDCSSR 215 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~v~ 215 (442)
+..+.+|.+.|++++|+|+ +++|++|+.||.|+|||+..........+.+|.+.|++++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4578899999999999999 88999999999999999976667888889999999999999987 99999999999999
Q ss_pred EEECCCCc--EEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEEEECCCCc--eEEEeccCCCCEeEEEEee-----
Q 013475 216 LVDVEKGI--ETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRLWDIRTGK--VAHEYIQSLGPILDVEFTI----- 284 (442)
Q Consensus 216 vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~----- 284 (442)
+||+.+++ .+..+. |...|++++|+|++ ..++++|+.||.|++||++++. ....+..|...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999986 455555 88999999999982 3899999999999999998773 4456678899999999999
Q ss_pred --------CCCEEEeccCCCCCcCCCCeEEEEeCCCCccc---ceeeccccceeeeEEecCC---CCeeEEEeCCCeEEE
Q 013475 285 --------NGKQFVSSSDVSGSNMSENSIVVWDVSREVPL---SKQVYVEAYTCPCVRHHPF---DPYFVAQSNGNYIAI 350 (442)
Q Consensus 285 --------~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~i~i 350 (442)
++.+|++++. ||.|++||++++... ......+...+.+++|+|+ +.++++++.|+.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~-------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA-------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET-------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC-------CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999998 999999999876432 2233456778999999999 899999999999999
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
||+................+...+++++|+|+|++|++|+.||.|++||+..
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9998764332222223334557789999999999999999999999999874
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.1e-35 Score=271.93 Aligned_cols=258 Identities=18% Similarity=0.237 Sum_probs=218.9
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-----ceeeeeccCCCceeEEEeCCCC-CEEEEEe
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-----KLARVLNFHSAAVNDVKWSQQG-LFVLSCG 209 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~ 209 (442)
..+..+.+|.+.|++++|+|+++++|++|+.||+|+|||+.+... .....+.+|...|.+++|+|++ ++|++++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 355678899999999999993399999999999999999966532 5677888999999999999998 6999999
Q ss_pred cCCcEEEEECCCCcEEEee--e-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCC-EeEEEEee
Q 013475 210 YDCSSRLVDVEKGIETQSF--R-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGP-ILDVEFTI 284 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~~~ 284 (442)
.|+.|++||+.+++.+..+ . |...|.+++|+|++ .+|++++.||.|++||+++++.+..+ ..|.+. +.++.|++
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence 9999999999999999888 4 88999999999986 88999999999999999999998888 678765 89999999
Q ss_pred CCCEEEec---cCCCCCcCCCCeEEEEeCCCCcc-cceeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCccc
Q 013475 285 NGKQFVSS---SDVSGSNMSENSIVVWDVSREVP-LSKQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 285 ~~~~l~~~---~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~ 359 (442)
++++|+++ +. |+.|++||+++... +......+...+.++.|+|++.++++ ++.|+.|++|++......
T Consensus 231 ~~~~l~~g~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 231 EGKILTTGFSRMS-------ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp TTEEEEEEECTTC-------CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred CCcEEEEeccCCC-------CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 99999998 66 99999999998665 33444456667999999999999875 557999999999876531
Q ss_pred ccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 360 DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
+..+..+.+...+.+++|+|++.++++ .++.+++|++.++++
T Consensus 304 --~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 304 --LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp --EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred --eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 233444445678999999999998875 456899999988654
No 91
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-36 Score=277.41 Aligned_cols=246 Identities=13% Similarity=0.081 Sum_probs=199.8
Q ss_pred eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC--cEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC
Q 013475 186 LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG--IETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR 262 (442)
Q Consensus 186 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (442)
+..+.+.|++++|+|++++|++++.|+.|++||+.++ +.+..+. |...|.+++|+|++ ++|++++.|+.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcC
Confidence 3346789999999999999999999999999999988 6677776 88999999999996 899999999999999999
Q ss_pred CCc---eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc---cceeeccccceeeeEEecCCC
Q 013475 263 TGK---VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP---LSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 263 ~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 336 (442)
+++ ....+..|...|.+++|+|++++|++++. |+.|++||++.... ...+...+...+.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-------SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEec-------CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 876 67778889999999999999999999998 99999999998763 334443377899999999999
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccc------------cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLD------------KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
+++++++.|+.|++||+....... .-.......+...+.+++|+|+|++|++++.||.|++||+.+++
T Consensus 159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 999999999999999986322110 00111111556779999999999999999999999999999988
Q ss_pred e----eEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 405 L----ERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 405 ~----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
. +..+.+|...|.+++|+|++ .+|++++.|+.+ +|
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~ 277 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LL 277 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EE
T ss_pred CcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EE
Confidence 7 88899999999999999998 799998877666 55
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=273.69 Aligned_cols=266 Identities=11% Similarity=0.025 Sum_probs=213.6
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~ 221 (442)
+.....|.+|+|+|| |+++|+++.|++|+ |.. ....+.+|...|.+++|+|+| .++.+.+|+.+.
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~-----~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QPK-----YAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ 76 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EEC-----CCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--ccc-----ccceecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence 445689999999999 99999999999999 642 223447899999999999998 466666665432
Q ss_pred CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-----CEeEEEEeeCCCEEEeccCCC
Q 013475 222 GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-----PILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~ 296 (442)
. ....+.+...|.+++|+|+| .+|++++.||.|++||... .+..+. |.. .|.+++|+|||++|++++.
T Consensus 77 ~-~~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~-- 149 (588)
T 2j04_A 77 N-GLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE-- 149 (588)
T ss_dssp S-CSSTTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET--
T ss_pred c-eEeecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC--
Confidence 2 23344568889999999997 8999999999999999543 666666 655 4999999999999999999
Q ss_pred CCcCCCCeEEEEeCCCCcc-------cceee---ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 297 GSNMSENSIVVWDVSREVP-------LSKQV---YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
||+|++||+..+.. +..+. ..|...|.+++|+|++ +++++.|+.+++|++.+.........+.
T Consensus 150 -----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 -----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp -----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred -----CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 99999999998753 22321 3456789999999999 8899999999999998866321122332
Q ss_pred ecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEE--cCCCCCEEEEeeCCCcEEEcC
Q 013475 367 SHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF--HPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd 442 (442)
. .+...|.+++|+ |++|++++ ++.|++||+.+++......+|...|.+++| +|++ ..|++++.||+ ++|.
T Consensus 223 ~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~ 294 (588)
T 2j04_A 223 N-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLL 294 (588)
T ss_dssp C-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEE
T ss_pred c-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEe
Confidence 1 344679999999 68999987 699999999988774444489999999999 9998 79999999999 8884
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-34 Score=266.35 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=210.7
Q ss_pred eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc--EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC
Q 013475 186 LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI--ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR 262 (442)
Q Consensus 186 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (442)
+..|...|++++|+|++++|++++.|+.|++||+.+++ .+..+. |...|.+++|+|++ .+|++++.||.|++||++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECC
Confidence 44589999999999999999999999999999999987 777776 88999999999986 899999999999999998
Q ss_pred CCceEEE--eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc---cceeeccccceeeeEEecCCCC
Q 013475 263 TGKVAHE--YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP---LSKQVYVEAYTCPCVRHHPFDP 337 (442)
Q Consensus 263 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 337 (442)
+++.... +..|...|.+++|++++++|++++. |+.|++||++.... .......+...+.++.|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 8875443 4678889999999999999999998 99999999988763 3334455677899999999999
Q ss_pred eeEEEeCCCeEEEeeCCCCc---------------ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 338 YFVAQSNGNYIAIFSSTPPF---------------RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
++++++.++.|++||+.... ....+..+. .+...+.+++|+|++++|++++.||.|++||+.+
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999999999965211 001112222 4457799999999999999999999999999999
Q ss_pred ceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 403 SELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 403 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++++..+..|...|.+++|+|++ .+|+++ .||.|++||
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFT 271 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEE
T ss_pred CceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEE
Confidence 99999999999999999999998 677777 899999996
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-34 Score=269.49 Aligned_cols=257 Identities=11% Similarity=0.151 Sum_probs=216.3
Q ss_pred cceecccccccceEEEEeeCC---CC---CEEEEecCCCcEEEEEcccCCc---ceeeeeccC-----CCceeEEEeC--
Q 013475 136 RLSTALCHHTKAVNSINWSPT---HA---HLLASAGMDQSICIWNVWSRDQ---KLARVLNFH-----SAAVNDVKWS-- 199 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~---~~---~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~h-----~~~v~~l~~~-- 199 (442)
..+..+.+|...|++++|+|+ ++ ++|++++.||.|++||+.+... .....+..| ...|.+++|+
T Consensus 53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence 467888899999999999997 46 7899999999999999966532 116667778 5999999999
Q ss_pred --CCCCE-EEEEecCCcEEEEECCC------CcEEE-----eee--------CCcceEEEEEccCCCCEEEEeeCCCcEE
Q 013475 200 --QQGLF-VLSCGYDCSSRLVDVEK------GIETQ-----SFR--------EELAVRVVKFHPENSNLFLSGGSKGLLR 257 (442)
Q Consensus 200 --~~~~~-l~s~~~d~~v~vwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 257 (442)
+++++ |++++.||.|++||+.+ ++.+. .+. +...|.+++|+|++ +|++++.||.|+
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~ 210 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQ 210 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEE
Confidence 99999 99999999999999998 65554 542 68889999999985 999999999999
Q ss_pred EEECCCCceEEEecc---C---CCCEeEEEEeeCCCEEEeccCCCCCcCCC---CeEEEEeCCCCcccceeecc------
Q 013475 258 LWDIRTGKVAHEYIQ---S---LGPILDVEFTINGKQFVSSSDVSGSNMSE---NSIVVWDVSREVPLSKQVYV------ 322 (442)
Q Consensus 258 iwd~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~------ 322 (442)
+||+++++.+..+.. | ...|.+++|+|++++|++++. | +.|++||+++++.+..+...
T Consensus 211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-------d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-------SNSFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-------ETTEEEEEEEETTTCCEEEEECBC------
T ss_pred EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec-------CCCCceEEEEECCCCcccceeccCcccccc
Confidence 999999999999988 8 899999999999999999998 8 99999999988776655431
Q ss_pred ------ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe------ec-------------ccccCcEEE
Q 013475 323 ------EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE------SH-------------GVSGFPIKC 377 (442)
Q Consensus 323 ------~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~------~~-------------~~~~~v~~~ 377 (442)
+...+.++.|+|++.+|++++.|+.|++||+....... .+. .+ .+...|.++
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE---EEecccCcccchhhhhccccccccccCCceeEE
Confidence 67789999999999999999999999999998875543 333 22 015779999
Q ss_pred EEccCC----------CEEEEecCCCcEEEEecCCce
Q 013475 378 SFSLDG----------EKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 378 ~~s~~g----------~~l~~g~~dg~i~iwd~~~~~ 404 (442)
+|+|+| ++|++++.||.|++||+.+++
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999998 799999999999999998763
No 95
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.9e-35 Score=275.38 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=196.3
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.....+.+|.+.|++|+|+|.++++|++|+.||+|+|||+++...........+...+.+++|++++++|++|+.||.|+
T Consensus 155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence 34556789999999999999658999999999999999995542222222333455688999999999999999999999
Q ss_pred EEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE---eccCCCCEeEEEEeeCCCEEEe
Q 013475 216 LVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE---YIQSLGPILDVEFTINGKQFVS 291 (442)
Q Consensus 216 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~ 291 (442)
+||++.. .+..+. |...|.+++|+|++..+|++|+.|+.|++||+++.+.... ..+|...|++++|+|+|++|++
T Consensus 235 ~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 235 LLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp EEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred eeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE
Confidence 9999754 444555 8899999999999878999999999999999987654333 3578899999999999999999
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccc-----cceeeeEEecCCCCeeEEEe------------CCCeEEEeeCC
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-----AYTCPCVRHHPFDPYFVAQS------------NGNYIAIFSST 354 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~------------~~~~i~i~~~~ 354 (442)
++. |+.|++||++++.......... ...+....|++++..++++. .++.|++||..
T Consensus 314 ~~~-------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 314 TDQ-------KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp EES-------SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred EcC-------CCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 998 9999999999876554433221 11234456677776666653 34679999998
Q ss_pred CCcccccceeEeecccccCcEEE-EEccCCCEEEEecCCCcEEEEecCCcee
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKC-SFSLDGEKLVSGSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~g~~dg~i~iwd~~~~~~ 405 (442)
++..+. .+. ..+...|.++ +|+|+|++|++|+ |+.|+|||+++++.
T Consensus 387 ~g~~~~---~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 387 SGKMMC---QLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SCCEEE---EEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCcEEE---EEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 875542 222 1234556666 6999999999987 78999999998765
No 96
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=263.57 Aligned_cols=268 Identities=9% Similarity=0.028 Sum_probs=209.6
Q ss_pred EeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC---------CC
Q 013475 152 NWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE---------KG 222 (442)
Q Consensus 152 ~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~---------~~ 222 (442)
.+..+ +++|++|+.||+|++||+.++ +.+..+. ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 43 ~~~~d-~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYD-KWVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEE-EEEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCC-CCEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 34456 789999999999999999654 4455554 567888999988 9999999999999665 55
Q ss_pred cEEEeee--CCcceEEEEEcc--CCCCEEEEeeCCCcEEEEECCCCceEEEec-cCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 223 IETQSFR--EELAVRVVKFHP--ENSNLFLSGGSKGLLRLWDIRTGKVAHEYI-QSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 223 ~~~~~~~--~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
+.+..+. |...|.+++|+| ++ .+|++++.||.|++||+++++.+..+. .+...|.+++|+|++.+|++++.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~--- 190 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP--- 190 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT---
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC---
Confidence 5555555 557899999999 85 899999999999999999998876664 34558999999999999999998
Q ss_pred CcCCCCeEEEEeCCCCccc-ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 298 SNMSENSIVVWDVSREVPL-SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
|+.|++||+++++.+ ..+...|...+.+++|+|++.+|++++.+ .|++||++.......+..+..+.....-.+
T Consensus 191 ----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 191 ----DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ----TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ----CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceE
Confidence 999999999998877 44444377899999999999999999954 999999998766544443322221111146
Q ss_pred EEEccCCCEEEEecC-CCcEEEEecCCceeeEeeeccCCceeEEEEcC---CCCCEEEEeeCCCcEEEc
Q 013475 377 CSFSLDGEKLVSGSS-DGSIYFYNCRSSELERKIKAYEQACIDVAFHP---ILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~s~~~dg~i~iw 441 (442)
++|+|+|++|++++. |+.|+||++.+....... ..+..+.|.+ +. ..|++++.||.+.++
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADF-TDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCC-CEEEEEEETTEEEEE
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccccc-ceeEEEecCCceEEE
Confidence 999999999999888 999999999765433322 5677788888 66 688888888888775
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.4e-34 Score=289.71 Aligned_cols=249 Identities=17% Similarity=0.246 Sum_probs=225.4
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 259 (442)
...+.+.+|.+.|.+++|+|++.+|++++.||.|++||+.+++.+..+. |...|.+++|+|++ .+|++++.||.|++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEE
Confidence 4566788899999999999999999999999999999999999998888 88999999999996 899999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC-CCCe
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP-FDPY 338 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (442)
|+.+++.+..+..|.+.|.+++|+|++.+|++++. |+.|++||+.++.........+...+.++.|+| ++..
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence 99999999999999999999999999999999998 999999999887555556666778899999999 8889
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc--CCCEEEEecCCCcEEEEecCCceeeEeeeccCCce
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL--DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQAC 416 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v 416 (442)
+++++.++.|++||+....... .+.. .+...+..++|+| ++.+|++++.||.|++||+.+++.+..+.+|...|
T Consensus 156 l~~~~~dg~v~vwd~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTPNF---TLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp EEEEETTSEEEEEETTCSSCSE---EEEC-CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred EEEEeCCCeEEEEECCCCccee---EEec-CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 9999999999999998765432 2221 2235688999999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 417 IDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 417 ~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+++|+|++ .+|++++.||.|++||
T Consensus 232 ~~~~~~~~~-~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 232 SFAVFHPTL-PIIISGSEDGTLKIWN 256 (814)
T ss_dssp EEEEECSSS-SEEEEEETTSCEEEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEE
Confidence 999999999 7999999999999996
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=257.56 Aligned_cols=248 Identities=16% Similarity=0.256 Sum_probs=214.8
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRL 258 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 258 (442)
......+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++ .+|++++.||.|++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKL 100 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Confidence 34556688899999999999999999999999999999999999999988 89999999999985 89999999999999
Q ss_pred EECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC-----CeEEEEeCCCCcccceee----------ccc
Q 013475 259 WDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE-----NSIVVWDVSREVPLSKQV----------YVE 323 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~----------~~~ 323 (442)
||+++++.+..+. +...|.+++|+++++++++++. + +.|.+||+.......... ..+
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILD-------NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEEC-------CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecC-------CccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9999999888887 7789999999999999999987 7 999999998765332221 122
Q ss_pred cc--eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 324 AY--TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 324 ~~--~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
.. .+.++.|+|+++++++++.++.|++||+...... ...+.. +...+.+++|+|++++|++++.||.|++||+.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 22 7899999999999999999999999999873221 133333 44679999999999999999999999999999
Q ss_pred CceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCC--------------cEEEcC
Q 013475 402 SSELERKIKAYEQACIDVAFHPILPNIIGSCSWNG--------------DVSVYE 442 (442)
Q Consensus 402 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--------------~i~iwd 442 (442)
+++.+..+. +...+..++|+|++ .++++++.++ .+++||
T Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 249 TLQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEE
T ss_pred CCceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999988887 78899999999999 7999998888 788885
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.6e-33 Score=256.81 Aligned_cols=282 Identities=11% Similarity=0.101 Sum_probs=208.6
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE-EEEecCCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV-LSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~ 213 (442)
.+.+..+.+|.+.|++++|+|| +++|++|+.++ ++||++... ....... ...+..+++.++++.+ ++++.|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPV--AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTE--EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCc--ceeeeee--cCCeEEEEEcCCCCEEEEEECCccE
Confidence 3445567899999999999999 89999998764 789998443 3333332 2358888999888877 45677899
Q ss_pred EEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-ceEEEeccCCCCEeEEEEeeCCCEEEe-
Q 013475 214 SRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-KVAHEYIQSLGPILDVEFTINGKQFVS- 291 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~- 291 (442)
|++||+.+++.+..+.+...|.++.|+++ .++++ .|+.|++||+.++ +.+..+.. +...+++++ .+++.
T Consensus 83 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIKVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEE
T ss_pred EEEEECCCCcEEEEEECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEe
Confidence 99999999999999998899999999875 23333 3789999999987 66555544 344556666 56665
Q ss_pred -ccCCCCCcCCCCeEEEEeCCCCcc---------------cceeeccccceeeeEEecCCCCeeEEEeCCCe-EEEeeCC
Q 013475 292 -SSDVSGSNMSENSIVVWDVSREVP---------------LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNY-IAIFSST 354 (442)
Q Consensus 292 -~~~~~~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-i~i~~~~ 354 (442)
++. +|.|++||++++.. .......|...+.+++|+|++.+|++++.|+. |++||+.
T Consensus 154 sg~~-------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 154 NEFN-------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp ESSC-------TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred CCCc-------CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 466 99999999997541 12344567789999999999999999999998 9999999
Q ss_pred CCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee--eEeee---------------------c
Q 013475 355 PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL--ERKIK---------------------A 411 (442)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~--~~~~~---------------------~ 411 (442)
++..+ ..+....+...|.+++|+|+|++|++++.|+.|+|||+..+.. ...+. .
T Consensus 227 ~~~~~---~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
T 3vu4_A 227 DGVLV---REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD 303 (355)
T ss_dssp TCCEE---EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred CCcEE---EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence 87654 3333212457799999999999999999999999999976531 11111 0
Q ss_pred cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 412 YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 412 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+......++|++++ .+|++++.||.+++|+
T Consensus 304 ~~~~~~~~a~~~d~-~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 304 KHVRGCKIAWISES-SLVVVWPHTRMIETFK 333 (355)
T ss_dssp TTCCCCEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCC-CEEEEEeCCCeEEEEE
Confidence 11234678999998 7999999999999985
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-35 Score=276.33 Aligned_cols=267 Identities=9% Similarity=0.112 Sum_probs=216.0
Q ss_pred EeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee-ccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCC---Cc---
Q 013475 152 NWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL-NFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEK---GI--- 223 (442)
Q Consensus 152 ~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~---~~--- 223 (442)
.|+|+ ++.+++++ .|+. ..+++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.
T Consensus 34 ~f~~~-~~~~~~~~------~w~~---~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 103 (437)
T 3gre_A 34 EFGPI-QEIVRSPN------MGNL---RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS 103 (437)
T ss_dssp GGCCC-CCCCCCCC------GGGC---CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS
T ss_pred hcCCc-cccccccc------cccc---cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc
Confidence 36777 77676655 3763 35667777 88999999999999 999999999999999999977 43
Q ss_pred EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC---CCceEEEec----------c--CCCCEeEEE--EeeCC
Q 013475 224 ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR---TGKVAHEYI----------Q--SLGPILDVE--FTING 286 (442)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~----------~--~~~~i~~~~--~~~~~ 286 (442)
....+.|...|.+++|+|++ .+|++++.||.|++||+. +++.+..+. . +...+.++. +++++
T Consensus 104 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 104 SSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp CSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 34555689999999999985 899999999999999995 454443322 1 455677777 55789
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeE
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRY 365 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~ 365 (442)
.+|++++. |+.|++||+++++.+..+... +...+.+++|+|++.++++++.|+.|++||++...... .+
T Consensus 183 ~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~ 252 (437)
T 3gre_A 183 SLLVALTN-------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR---SW 252 (437)
T ss_dssp EEEEEEET-------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE---EE
T ss_pred CEEEEEeC-------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE---EE
Confidence 99999998 999999999998877766653 66799999999999999999999999999998764432 22
Q ss_pred eecccccCcEEEEE----ccCCCEEEEecCCCcEEEEecCCceeeEeeec--------------------------cCCc
Q 013475 366 ESHGVSGFPIKCSF----SLDGEKLVSGSSDGSIYFYNCRSSELERKIKA--------------------------YEQA 415 (442)
Q Consensus 366 ~~~~~~~~v~~~~~----s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~ 415 (442)
. ..+...|.+++| ++++.+|++|+.||.|++||+.+++++..+.+ |...
T Consensus 253 ~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 253 S-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp B-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred e-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence 2 123356888844 55788999999999999999999988877764 4456
Q ss_pred eeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 416 CIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 416 v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|++++|+ ++ .+|++++.||.|++||
T Consensus 332 v~~l~~~-~~-~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 332 LSTISVS-ND-KILLTDEATSSIVMFS 356 (437)
T ss_dssp GCCEEEE-TT-EEEEEEGGGTEEEEEE
T ss_pred eEEEEEC-Cc-eEEEecCCCCeEEEEE
Confidence 8889999 55 6999999999999997
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=260.61 Aligned_cols=249 Identities=14% Similarity=0.198 Sum_probs=206.4
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEE-EEec---CCcEEEEECCCCcEEEe--eeCCcceEEEEEccCC--CCEEEEeeC
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVL-SCGY---DCSSRLVDVEKGIETQS--FREELAVRVVKFHPEN--SNLFLSGGS 252 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~---d~~v~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~--~~~l~~~~~ 252 (442)
.....+.+|...|.+++|+|++..++ +++. |+.|++||+.+++.... +.|...|.+++|+|++ ..+|++++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 44455678999999999999986555 5554 89999999999876544 3588999999999983 489999999
Q ss_pred CCcEEEEECCCCc-eEEEeccCCCCEeEEEE------eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeeccc-
Q 013475 253 KGLLRLWDIRTGK-VAHEYIQSLGPILDVEF------TINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVE- 323 (442)
Q Consensus 253 dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~- 323 (442)
||.|++||+.+++ .+..+..|...|.++.| ++++++|++++. |+.|++||++++. .+.......
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-------d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-------DGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-------TSCEEEECTTSCSSCSEEECCCTT
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-------CCeEEEEeCCCCCCcceeccccCC
Confidence 9999999999887 88899999999999965 678999999998 9999999999876 343333222
Q ss_pred --cceeeeEE----ecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc---CCCEEEEecCCCc
Q 013475 324 --AYTCPCVR----HHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL---DGEKLVSGSSDGS 394 (442)
Q Consensus 324 --~~~~~~~~----~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~g~~dg~ 394 (442)
...+.++. |++++.++++++.++.|++||++..... ....+...+.+++|+| ++++|++++.||.
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR------WETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE------EEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee------eecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 23677777 7899999999999999999999886542 1123446799999999 9999999999999
Q ss_pred EEEEecCCceeeEeee-----ccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 395 IYFYNCRSSELERKIK-----AYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|++||+.+++.+..+. +|...|++++|+|++..+|++++.||.|+|||
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 9999999887766555 89999999999999834899999999999997
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=262.55 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=202.8
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC---CCEEEEEecCCcEEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ---GLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~v~vwd 218 (442)
.+|.+.|++++|+|+++++|++++.||.|++||+.+ ......+. +...+.++.|++. +.++++++.|+.|++||
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 469999999999995488999999999999999954 45666666 7889999999984 45999999999999999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-eEEEe---------------ccCCCCEeEEE
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-VAHEY---------------IQSLGPILDVE 281 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~~~ 281 (442)
+.+++.+..+. |...|.+++|+|++..+|++++.||.|++||++++. .+..+ ..|...|.+++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 99999888888 889999999999986679999999999999998765 33443 56788999999
Q ss_pred EeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc----ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc
Q 013475 282 FTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV----EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
|+|++++|++++. |+.|++||+++++........ .............+..+++++.++.|++||+.+..
T Consensus 253 ~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 325 (408)
T 4a11_B 253 FTSDGLHLLTVGT-------DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE 325 (408)
T ss_dssp ECTTSSEEEEEET-------TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC
T ss_pred EcCCCCEEEEecC-------CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc
Confidence 9999999999998 999999999987654332211 11222333334456677888899999999998876
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCc
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGD 437 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 437 (442)
.. ..+. .+...|.+++|+|++++|++|+.||.|++||+.+++.+.....+. ....+.+.....+.+.+.|+.
T Consensus 326 ~~---~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 326 QI---TMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp EE---EEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------
T ss_pred ce---eeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCc
Confidence 54 3333 345779999999999999999999999999999988776554332 223344443356777888999
Q ss_pred EEEcC
Q 013475 438 VSVYE 442 (442)
Q Consensus 438 i~iwd 442 (442)
+++|+
T Consensus 398 ~~~W~ 402 (408)
T 4a11_B 398 TSAWS 402 (408)
T ss_dssp -----
T ss_pred eeecC
Confidence 99995
No 103
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-33 Score=263.43 Aligned_cols=267 Identities=16% Similarity=0.302 Sum_probs=211.1
Q ss_pred Ccceec--ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 135 GRLSTA--LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~--l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
+++.+. +.+|...|++|+|+|+ |++|++|+.||+|+|||+.+ .+.+..+.+|...|.+++| ++.+|++|+.|+
T Consensus 135 g~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~--~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~ 209 (420)
T 4gga_A 135 GDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSW--NSYILSSGSRSG 209 (420)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred CCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCceEEEee--CCCEEEEEeCCC
Confidence 444444 4578889999999999 99999999999999999954 5788889999999999988 467999999999
Q ss_pred cEEEEECCCCc-EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc----eEEEeccCCCCEeEEEEeeCC
Q 013475 213 SSRLVDVEKGI-ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK----VAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 213 ~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~ 286 (442)
.+++||..... .+..+. |...+..+.|++++ .++++++.|+.|++|+..+++ .+.....|...|.+++|+|++
T Consensus 210 ~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~ 288 (420)
T 4gga_A 210 HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288 (420)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC
T ss_pred ceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc
Confidence 99999998754 445555 88999999999996 899999999999999998764 356677888999999999976
Q ss_pred C-EEEe--ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe--CCCeEEEeeCCCCccccc
Q 013475 287 K-QFVS--SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS--NGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 287 ~-~l~~--~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~i~~~~~~~~~~~ 361 (442)
. .+++ ++. |+.|++||+.++........ ...+.++.|++++..+++++ .|+.|++||..+...+
T Consensus 289 ~~~la~~~gs~-------D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-- 357 (420)
T 4gga_A 289 SNVLATGGGTS-------DRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-- 357 (420)
T ss_dssp TTEEEEEECTT-------TCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE--
T ss_pred ccEEEEEeecC-------CCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE--
Confidence 5 4444 345 99999999999877665543 34688899999999988865 7899999999887654
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEE
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF 421 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 421 (442)
..+.+ |...|++++|+|+|++|++|+.||+|+|||+....+......+...+....|
T Consensus 358 -~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 358 -AELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp -EEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred -EEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 44444 4578999999999999999999999999999877666666555544444333
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.5e-34 Score=258.46 Aligned_cols=241 Identities=12% Similarity=0.090 Sum_probs=208.0
Q ss_pred eeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc----EEEeeeCCcceEEEEEccCCCC-EEEEeeCCCcEEE
Q 013475 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI----ETQSFREELAVRVVKFHPENSN-LFLSGGSKGLLRL 258 (442)
Q Consensus 184 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i 258 (442)
....+|.+.|++++|+|++++|++++.|+.|++||+.++. ......|...|.+++|+|++ . +|++++.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEE
Confidence 3445799999999999999999999999999999999887 55555689999999999995 8 8999999999999
Q ss_pred EEC-CCCceEEEecc--CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC---------Ccccceeeccccce
Q 013475 259 WDI-RTGKVAHEYIQ--SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR---------EVPLSKQVYVEAYT 326 (442)
Q Consensus 259 wd~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~ 326 (442)
||+ .+++. ..+.. |...|.+++|++ +.+|++++. |+.|++||+++ .+.+.... +...
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~ 152 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASW-------DGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNK 152 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEET-------TSEEEEECHHHHTTBCEEEEESCSSSSS--SCCC
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcC-------CCeEEEEcccccccccccccCCeeeEEe--eCCc
Confidence 999 77654 67788 999999999999 999999998 99999999987 55554443 6678
Q ss_pred eeeEEecCCCCeeEEEeCCCeEEEeeCCC-CcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCc-
Q 013475 327 CPCVRHHPFDPYFVAQSNGNYIAIFSSTP-PFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSS- 403 (442)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~- 403 (442)
+.++.|++++ +++++.++.|++||+.. .... .......+...+.+++|+| ++++|++++.||.|++|+++..
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCcccccc---ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9999999887 99999999999999987 4332 1112234456789999999 9999999999999999999887
Q ss_pred -----eeeEeeeccCC---------ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 404 -----ELERKIKAYEQ---------ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 404 -----~~~~~~~~~~~---------~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+....+..|.. .|.+++|+|++ .+|++++.||.|+|||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWN 279 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEE
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEc
Confidence 77888888865 99999999998 7999999999999997
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.1e-33 Score=261.74 Aligned_cols=292 Identities=11% Similarity=0.085 Sum_probs=233.8
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceee-----eeccCCCceeEEEeCCCCCEEEEEec
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLAR-----VLNFHSAAVNDVKWSQQGLFVLSCGY 210 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~l~s~~~ 210 (442)
+.+..+..+ ..+.+++|+|+ +.++++++.|+.|++||+.++ +... .+.+|...|.+++|+++++++++++.
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDN-TRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSS-SEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred eEEEEEcCC-CCceEEEEeCC-CeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCEEEEEECC
Confidence 344445544 45669999996 899999999999999999654 3444 44578899999999999999999999
Q ss_pred CCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 211 DCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
|+.|++||+++++.+..+. +...+.+++|+|++..++++++.|+.|++||+++++.+..+..+ ..+.+++|+|+++++
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKEL 268 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEE
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEE
Confidence 9999999999999988887 78899999999997555567778999999999999888877665 568999999999999
Q ss_pred EeccCCCCCcC-CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCee-EEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 290 VSSSDVSGSNM-SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYF-VAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 290 ~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
++++....... .|+.|++||+++++.+... .+...+..++|+|+++.+ ++++.++.|++||..+..... .+
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~---~~-- 341 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK---SI-- 341 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE---EE--
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE---Ee--
Confidence 88872110000 2789999999988665544 233467889999999765 556899999999998764432 22
Q ss_pred cccccCcEEEEEccCCCEEEEecC---------------CCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSS---------------DGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
.+...+..++|+|+|++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|++ .+|+++
T Consensus 342 -~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~ 418 (433)
T 3bws_A 342 -PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDN-RYLVIS 418 (433)
T ss_dssp -ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS-CEEEEE
T ss_pred -cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCC-CEEEEE
Confidence 23356889999999999988776 57999999999999888876 5579999999999 677766
Q ss_pred e-CCCcEEEcC
Q 013475 433 S-WNGDVSVYE 442 (442)
Q Consensus 433 ~-~dg~i~iwd 442 (442)
+ .|+.|++||
T Consensus 419 ~~~d~~i~v~~ 429 (433)
T 3bws_A 419 DFLDHQIRVYR 429 (433)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCeEEEEE
Confidence 6 599999996
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=271.19 Aligned_cols=244 Identities=13% Similarity=0.189 Sum_probs=199.4
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCc-----------EEEeee-CC------------cceEEEEEccCCC
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI-----------ETQSFR-EE------------LAVRVVKFHPENS 244 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~-----------~~~~~~-~~------------~~v~~~~~~~~~~ 244 (442)
|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+. |. ..|++++|+|++.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 78899999999999999999999999999999876 455665 66 7899999999853
Q ss_pred -CEEEEeeCCCcEEEEECCCCceE---------------------------------------EE-eccCCCCEeEEEEe
Q 013475 245 -NLFLSGGSKGLLRLWDIRTGKVA---------------------------------------HE-YIQSLGPILDVEFT 283 (442)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~i~~~~~~ 283 (442)
.+|++++.|+.|++||+.+++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 68999999999999999764432 12 35788999999999
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccce------eeccccceeeeEEecCCC-CeeEEEeCCCeEEEeeCCC
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSK------QVYVEAYTCPCVRHHPFD-PYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~i~~~~~ 355 (442)
+++++|+++ . |+.|++||++... .+.. ....+...+.+++|+|++ .+|++++.|+.|++||++.
T Consensus 187 ~~~~~l~s~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 187 SDYETYLSA-D-------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp TTSSEEEEE-C-------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEe-C-------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 999999998 6 9999999999533 2221 134566789999999998 9999999999999999988
Q ss_pred Ccccc-cceeEeeccc----------ccCcEEEEEccCCCEEEEecCCCcEEEEecCC-ceeeEeeeccCCc--------
Q 013475 356 PFRLD-KFKRYESHGV----------SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS-SELERKIKAYEQA-------- 415 (442)
Q Consensus 356 ~~~~~-~~~~~~~~~~----------~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~-------- 415 (442)
..... ....+..+.. ...+.+++|+|+|++|++++. |.|+|||+.+ ++++..+.+|...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 76421 1233433321 127899999999999999998 9999999997 8888899888642
Q ss_pred -------eeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 416 -------CIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 416 -------v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+..++|+|++ .+|++++.||.|+|||
T Consensus 338 ~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFD 370 (447)
T ss_dssp HTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEE
T ss_pred cccccccceEEEECCCC-CEEEEeccCCEEEEEE
Confidence 3349999999 7999999999999997
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.4e-32 Score=254.50 Aligned_cols=265 Identities=13% Similarity=0.168 Sum_probs=219.1
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE-EEEecCCcEEEEECCCCcEEEeeeCCcceEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV-LSCGYDCSSRLVDVEKGIETQSFREELAVRV 236 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~ 236 (442)
+.++++++.|+.|++||+.+ .+....+..| ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+.+...+.+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~--~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~ 78 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTS--NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQG 78 (391)
T ss_dssp EEEEEEETTTTEEEEEETTT--TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred CEEEEEcCCCCEEEEEECCC--CeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccc
Confidence 45788999999999999954 4677777755 458999999999977 5666899999999999999999987779999
Q ss_pred EEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE-EeccCCCCCcCCCCeEEEEeCCCCcc
Q 013475 237 VKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF-VSSSDVSGSNMSENSIVVWDVSREVP 315 (442)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~~~~~d~~i~iwd~~~~~~ 315 (442)
++|+|++..++++++.++.|++||+.+++.+..+..+ ..+.+++|+++++++ ++++. ++.|++||+.+++.
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG-------DKTVSVINTVTKAV 150 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT-------TTEEEEEETTTTEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCC-------CCEEEEEECCCCcE
Confidence 9999997545567777899999999999888777655 578999999999977 67776 99999999998876
Q ss_pred cceeeccccceeeeEEecCCCCee-EEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec---C
Q 013475 316 LSKQVYVEAYTCPCVRHHPFDPYF-VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS---S 391 (442)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~ 391 (442)
+..... ...+..+.|+|+++++ ++++.++.|++||+.+...... +. +...+..++|+|+|++|++++ .
T Consensus 151 ~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~---~~---~~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 151 INTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT---VK---VEAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp EEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---EE---CSSEEEEEEECTTSSEEEEEEECSS
T ss_pred EEEEec--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE---Ee---cCCCccceEECCCCCEEEEEecCcC
Confidence 655443 3356889999999987 5677889999999987654322 21 234578899999999999887 6
Q ss_pred CCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 392 DGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 392 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++.|++||+.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||
T Consensus 223 ~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 223 FNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp CCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 8999999999999988888765 5789999999944447888999999997
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.6e-34 Score=265.86 Aligned_cols=259 Identities=13% Similarity=0.082 Sum_probs=182.8
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc---ceeeeeccCCCceeEEEeCC--------CCCEEEEEe
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ---KLARVLNFHSAAVNDVKWSQ--------QGLFVLSCG 209 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~~~--------~~~~l~s~~ 209 (442)
...|...+....++++ +.+|++++.|++|+|||+.++.. .....+.+|.+.|++++|+| |+++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CC----------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred ccccCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 3445555555666666 88999999999999999976533 23445789999999999997 789999999
Q ss_pred cCCcEEEEECCCCcEEEee-eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE-------------------
Q 013475 210 YDCSSRLVDVEKGIETQSF-REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE------------------- 269 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------- 269 (442)
.|++|+|||+.++..+..+ .|...+.+++|+|++.++|++++.|+.|++||+++++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9999999999887665544 48999999999999767899999999999999987754322
Q ss_pred ------eccCCCCEeEEEEe-eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE
Q 013475 270 ------YIQSLGPILDVEFT-INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 270 ------~~~~~~~i~~~~~~-~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (442)
..+|...+.++.|+ ++++.|++++. |+++++||+........+. .+...+..+.+.++..
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-------d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~----- 310 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCK-------SGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQ----- 310 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECT-------TSEEEEEEC--------------------CCSCSEE-----
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeC-------CCCEEEEECccCCCCceEe-eecCccccEEEccccc-----
Confidence 13566788899987 79999999998 9999999998765443322 1222222333332211
Q ss_pred eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc--CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEE
Q 013475 343 SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL--DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVA 420 (442)
Q Consensus 343 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 420 (442)
............|++ ++.++++|+.||.|+|||+.+++++..+..|...|.+++
T Consensus 311 ------------------------~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva 366 (393)
T 4gq1_A 311 ------------------------GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC 366 (393)
T ss_dssp ------------------------EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred ------------------------cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE
Confidence 111112233344554 455778899999999999999999888889999999999
Q ss_pred EcCCCCCEEEEeeCCCcE
Q 013475 421 FHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i 438 (442)
|+|+| ++||+++.||.+
T Consensus 367 fspdG-~~LA~as~~Gv~ 383 (393)
T 4gq1_A 367 WHQDG-SHLAIATEGSVL 383 (393)
T ss_dssp ECTTS-SEEEEEESSEEE
T ss_pred EcCCC-CEEEEEeCCCeE
Confidence 99999 799999987753
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-34 Score=283.39 Aligned_cols=250 Identities=14% Similarity=0.187 Sum_probs=209.3
Q ss_pred eeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC--CCcEEEeee-CCcceEEEEEccCC-CCEEEEeeCCCcEEE
Q 013475 183 ARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE--KGIETQSFR-EELAVRVVKFHPEN-SNLFLSGGSKGLLRL 258 (442)
Q Consensus 183 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i 258 (442)
...+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+. |...|++++|+++. ..+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678899999999999999999999999999999998 446666666 88999999999872 389999999999999
Q ss_pred EECCCCc--eEEEeccCCCCEeEEEEeeC--CCEEEeccCCCCCcCCCCeEEEEeCCCCccc-ceeeccccceeeeEEec
Q 013475 259 WDIRTGK--VAHEYIQSLGPILDVEFTIN--GKQFVSSSDVSGSNMSENSIVVWDVSREVPL-SKQVYVEAYTCPCVRHH 333 (442)
Q Consensus 259 wd~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~ 333 (442)
||+++++ .+..+..|...|.+++|+|+ ++++++++. ||.|++||++..... ......+...+.++.|+
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-------dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-------TSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC-------CCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence 9999886 67788889999999999999 999999998 999999999987433 23344567789999999
Q ss_pred C-------------CCCeeEEEeCCCeEEEeeCCCCcccc-cceeEeecccccCcEEEEEccC---CCEEEEecCCCcEE
Q 013475 334 P-------------FDPYFVAQSNGNYIAIFSSTPPFRLD-KFKRYESHGVSGFPIKCSFSLD---GEKLVSGSSDGSIY 396 (442)
Q Consensus 334 ~-------------~~~~l~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~ 396 (442)
| ++.++++++.|+.|++||++...... ....+. .+...|.+++|+|+ +++|++|+.||.|+
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence 9 58999999999999999998764331 122233 44577999999999 99999999999999
Q ss_pred EEecCCce-----eeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 397 FYNCRSSE-----LERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 397 iwd~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+||+.+++ .+.....|...|++++|+|++ .+|++++.||.|+|||
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCB
T ss_pred EecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEe
Confidence 99998864 334445688899999999998 7999999999999997
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=245.32 Aligned_cols=240 Identities=18% Similarity=0.185 Sum_probs=206.7
Q ss_pred cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEE
Q 013475 180 QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRL 258 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 258 (442)
.+....+.+|.+.|++++| +++++|++++.||.|++||+.+++....+. |...|.+++|+|++ .+|++++.||.|++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMING 85 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEE
Confidence 4677889999999999999 999999999999999999999998887777 89999999999986 89999999999999
Q ss_pred EECCCC---ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC-
Q 013475 259 WDIRTG---KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP- 334 (442)
Q Consensus 259 wd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~- 334 (442)
|++... +.+..+..|...|.++.| +++++++++. |+.|++|| ..... .....+...+.++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~-------d~~i~~~d--~~~~~-~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSW-------DKTAKVWK--EGSLV-YNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEET-------TSEEEEEE--TTEEE-EEEECCSSCEEEEEEEET
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeC-------CCCEEEEc--CCcEE-EecccCCCceeEEEEccC
Confidence 998764 557778899999999999 5789999998 99999999 33333 33345667888899888
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ 414 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 414 (442)
++.++++++.++.|++||.... ...+. ..+...+.+++|++++. |++++.||.|++||+.+++.+..+..|..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~-----~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 226 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV-----IKTFS-GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES 226 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE-----EEEEC-SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCCEEEEEECCCCEEEEecCce-----EEEEe-ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc
Confidence 8999999999999999994321 12222 12557799999999998 99999999999999999999999999999
Q ss_pred ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 415 ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 415 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|++++|+|++ .|++++.||.|++||
T Consensus 227 ~i~~~~~~~~~--~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 227 FVYCIKLLPNG--DIVSCGEDRTVRIWS 252 (313)
T ss_dssp CEEEEEECTTS--CEEEEETTSEEEEEC
T ss_pred eEEEEEEecCC--CEEEEecCCEEEEEE
Confidence 99999999998 588999999999997
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1e-32 Score=252.27 Aligned_cols=248 Identities=13% Similarity=0.059 Sum_probs=196.5
Q ss_pred ecccccccceEEEEeeCCCCCEEEEe-----------cCCCcEEEEEcccCCccee--ee-----eccCCCceeEEEeCC
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASA-----------GMDQSICIWNVWSRDQKLA--RV-----LNFHSAAVNDVKWSQ 200 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~-----------~~dg~i~iwd~~~~~~~~~--~~-----~~~h~~~v~~l~~~~ 200 (442)
..|.+|...|.+++++. +.+++| +.|+.+++|++........ .. ...+...+.+++|+|
T Consensus 67 ~~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp EECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred EEccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 46788999999998874 356554 4578899999865543221 11 123455689999999
Q ss_pred CCCEEEEEe--cCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE--eccCCCC
Q 013475 201 QGLFVLSCG--YDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE--YIQSLGP 276 (442)
Q Consensus 201 ~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~ 276 (442)
||++|++++ .|++|+|||+++++++..+.|...|.+++|+|+| .+|++++.+ .+++|+..+++.+.. ...|...
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCC
Confidence 999987655 6899999999999999999999999999999996 888888754 577777777765543 3567788
Q ss_pred EeEEEEeeCCCEEEeccCCCCCcCCCC----eEEEEeCCCCcccc---eeeccccceeeeEEecCCCCeeEEEeCCCeEE
Q 013475 277 ILDVEFTINGKQFVSSSDVSGSNMSEN----SIVVWDVSREVPLS---KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIA 349 (442)
Q Consensus 277 i~~~~~~~~~~~l~~~~~~~~~~~~d~----~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 349 (442)
|.+++|+|+++++++++. |+ .+++|++....... .....+...|.+++|+|++++|++|+.|+.|+
T Consensus 222 v~~v~fspdg~~l~~~s~-------d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~ 294 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASL-------KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA 294 (365)
T ss_dssp EEEEEEEETTEEEEEEEE-------SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEEEEEcCCCCEEEEEec-------CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence 999999999999999986 65 68889987654322 22334566899999999999999999999999
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
+||+.+...+. .+ ...|...|++++|+|||++|++|+.|++|+|||+..
T Consensus 295 iwd~~~~~~~~---~~-~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 295 LVKLKDLSMSK---IF-KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTTTEEEE---EE-TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEECCCCcEEE---Ee-cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99998865432 21 134567899999999999999999999999999964
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=259.17 Aligned_cols=260 Identities=10% Similarity=0.008 Sum_probs=203.6
Q ss_pred ecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 139 TALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 139 ~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
..+.+|...|++++|+|+ | .++.+.+|+. +......+. |...|.+++|+|+|++|++++.||.|++||
T Consensus 46 ~~l~gh~~~v~~V~FsPd-g-------~~~~~~~~~~---~~~~~~~~~-~~~~V~~vawSPdG~~LAs~s~dg~V~iwd 113 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPL-E-------FENKLDFELA---QQNGLLNSQ-PVCYPRVCKPSPIDDWMAVLSNNGNVSVFK 113 (588)
T ss_dssp SCCSSBGGGTEEEEEECC-C-------CCCTTTTSCC---CSSCSSTTS-CSCCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred ceecCCCccEEEEEECCC-C-------CcceEEEEeC---CCceEeecC-CCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 455799999999999999 6 4666666653 333343444 688999999999999999999999999999
Q ss_pred CCCCcEEEeeeCCc-----ceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-------eEEEe----ccCCCCEeEEEE
Q 013475 219 VEKGIETQSFREEL-----AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-------VAHEY----IQSLGPILDVEF 282 (442)
Q Consensus 219 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~i~~~~~ 282 (442)
.+. ++..+.|.. .+.+++|+|+| ++|++|+.||+|++||+.++. .+.++ .+|...|.+++|
T Consensus 114 ~~~--~l~~l~~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw 190 (588)
T 2j04_A 114 DNK--MLTNLDSKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW 190 (588)
T ss_dssp TTE--EEEECCCSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE
T ss_pred CCc--eeeeccCCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEE
Confidence 655 555555443 59999999996 899999999999999999875 35666 667789999999
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc---ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL---SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
+|+| +++++. |+.|++||+..+... ..+...+...|.+++|+ +..+++++ ++.|++|+..+....
T Consensus 191 SPdg--Laass~-------D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~ 258 (588)
T 2j04_A 191 YEDV--LVAALS-------NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS 258 (588)
T ss_dssp ETTE--EEEEET-------TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE
T ss_pred cCCc--EEEEeC-------CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE
Confidence 9999 667776 999999999887642 22333566789999999 68888886 699999999876442
Q ss_pred ccceeEeecccccCcEEEEE--ccCCCEEEEecCCCcEEEEecCC-----------------------ceeeEeeeccCC
Q 013475 360 DKFKRYESHGVSGFPIKCSF--SLDGEKLVSGSSDGSIYFYNCRS-----------------------SELERKIKAYEQ 414 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~g~~dg~i~iwd~~~-----------------------~~~~~~~~~~~~ 414 (442)
.+. .+|...+..++| +|++..|+++++||+ ++|..+. ++.+..+.+ ..
T Consensus 259 ----~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~ 331 (588)
T 2j04_A 259 ----SLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TL 331 (588)
T ss_dssp ----EEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EE
T ss_pred ----EEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ce
Confidence 222 135677899999 999999999999999 9998742 111222222 44
Q ss_pred ceeEEEEcCCCCCEEEEee
Q 013475 415 ACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 415 ~v~~~~~~p~~~~~l~s~~ 433 (442)
.|.+++|+||| +++|+++
T Consensus 332 ~I~~va~SPdG-~~lA~~~ 349 (588)
T 2j04_A 332 VIHGISLSPDG-YSIAIVY 349 (588)
T ss_dssp EEEEEEECTTS-SEEEEEE
T ss_pred EEEEEEECCCC-CEEEEEE
Confidence 68999999999 7999886
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.4e-30 Score=241.03 Aligned_cols=287 Identities=11% Similarity=0.109 Sum_probs=226.3
Q ss_pred CcceecccccccceEEEEeeCCCCCEE-EEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLL-ASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~ 212 (442)
++++..+.+|. .+.+++|+|+ +++| ++++.|+.|++||+.+ .+....+..+ ..+.+++|+|++++|++++ .++
T Consensus 22 ~~~~~~~~~~~-~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~ 96 (391)
T 1l0q_A 22 NKVTATIPVGS-NPMGAVISPD-GTKVYVANAHSNDVSIIDTAT--NNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASS 96 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTT-SSEEEEEEGGGTEEEEEETTT--TEEEEEEECS-SSEEEEEECTTSSEEEEEETTTT
T ss_pred CeEEEEeecCC-CcceEEECCC-CCEEEEECCCCCeEEEEECCC--CeEEEEEECC-CCccceEECCCCCEEEEEECCCC
Confidence 56667777775 4899999999 6655 7788999999999954 4666677644 4999999999999886555 579
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE-Ee
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF-VS 291 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~ 291 (442)
.|++||+.+++.+..+.+...+.+++|+|++..++++++.++.|++||+.+++.+..+..+ ..+.+++|+++++++ ++
T Consensus 97 ~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEE
Confidence 9999999999999988888889999999997545588888999999999999988887766 567999999999987 56
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe---CCCeEEEeeCCCCcccccceeEeec
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS---NGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
++. ++.|++||+++++...... ....+.+++|+|+++++++++ .++.|++||+.+.... ..+..+
T Consensus 176 ~~~-------~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~ 243 (391)
T 1l0q_A 176 NFD-------SMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT---ARIPVG 243 (391)
T ss_dssp ETT-------TTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE---EEEECC
T ss_pred eCC-------CCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE---EEEecC
Confidence 666 8999999999887654443 345788899999999999887 6899999999876543 223322
Q ss_pred ccccCcEEEEEccCCCEE-EEecCCCcEEEEecCCceeeEeeeccCCcee---EEEEcCCC-------------------
Q 013475 369 GVSGFPIKCSFSLDGEKL-VSGSSDGSIYFYNCRSSELERKIKAYEQACI---DVAFHPIL------------------- 425 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~---~~~~~p~~------------------- 425 (442)
..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 244 ---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~ 320 (391)
T 1l0q_A 244 ---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFL 320 (391)
T ss_dssp ---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEET
T ss_pred ---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccc
Confidence 347889999999988 5778899999999999999988877654321 12222211
Q ss_pred --CCEEEEeeCCCcEEEcC
Q 013475 426 --PNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 426 --~~~l~s~~~dg~i~iwd 442 (442)
+..|...+.|..+++||
T Consensus 321 ~~~~~~~~~~~~~~~~~W~ 339 (391)
T 1l0q_A 321 SEPVQFTDLSKDATEWKWD 339 (391)
T ss_dssp TCCEEEEECCBSCSEEEEE
T ss_pred cceEEEEeCCCCceEEEEE
Confidence 02466667788899996
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-31 Score=244.81 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=185.7
Q ss_pred EEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEee
Q 013475 172 IWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGG 251 (442)
Q Consensus 172 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 251 (442)
||++.+ ...+..+..|...|++++|+||+++|++|+.++ +++||+++++......+. .+..+.+.+++..++++++
T Consensus 3 i~s~~~--~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMIT--RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECS
T ss_pred cccccc--cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEEC
Confidence 455532 345556688999999999999999999988665 789999988776655533 4778888887644557788
Q ss_pred CCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC-cccceeeccccceeeeE
Q 013475 252 SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE-VPLSKQVYVEAYTCPCV 330 (442)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 330 (442)
.|+.|++||+.+++.+..+. +...|.++.|+++ .++++. ++.|++||+.+. +.+..+.. ....+
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~--------~~~i~i~d~~~~~~~~~~~~~----~~~~~ 143 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVSY--------GDVISVFKFGNPWKRITDDIR----FGGVC 143 (355)
T ss_dssp STTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEEE--------TTEEEEEESSTTCCBSSCCEE----EEEEE
T ss_pred CccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEEE--------cCEEEEEECCCCceeeEEecc----CCceE
Confidence 89999999999999988886 5578999999865 455554 789999999987 55554433 33345
Q ss_pred EecCCCCeeEE--EeCCCeEEEeeCCCCcccc------------c-ceeEeecccccCcEEEEEccCCCEEEEecCCCc-
Q 013475 331 RHHPFDPYFVA--QSNGNYIAIFSSTPPFRLD------------K-FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGS- 394 (442)
Q Consensus 331 ~~~~~~~~l~~--~~~~~~i~i~~~~~~~~~~------------~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~- 394 (442)
++++ .++++ ++.++.|++||+....... . ...+. .|...|.+++|+|+|++|++|+.||+
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC--CCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--ccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 5556 55555 6889999999998754110 0 23343 44577999999999999999999998
Q ss_pred EEEEecCCceeeEeee-c-cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 395 IYFYNCRSSELERKIK-A-YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 395 i~iwd~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+|||+.+++++..+. + |...|.+++|+|++ .+|++++.||+|+|||
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEE
Confidence 9999999999999998 5 99999999999998 7999999999999996
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=244.44 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=200.9
Q ss_pred CcceeeeeccCCCceeEEEeCCC---CCEEEEEecCCcEEEEECCC-CcEE-Eeee-CCcceEEEEEccCCCCEEEEeeC
Q 013475 179 DQKLARVLNFHSAAVNDVKWSQQ---GLFVLSCGYDCSSRLVDVEK-GIET-QSFR-EELAVRVVKFHPENSNLFLSGGS 252 (442)
Q Consensus 179 ~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~d~~v~vwd~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~~l~~~~~ 252 (442)
..+.+..+.+|.+.|++++|+|+ +++|++++.||.|++||+.+ +..+ ..+. |...|.+++|+|++ .+|++++.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~ 106 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASC 106 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEET
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcC
Confidence 34667788899999999999998 69999999999999999997 5554 4454 89999999999986 89999999
Q ss_pred CCcEEEEECCCCceEEEeccCCCCEeEEEE--eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeE
Q 013475 253 KGLLRLWDIRTGKVAHEYIQSLGPILDVEF--TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCV 330 (442)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 330 (442)
||.|++||+++++.+. +..|...|.+++| ++++++|++++. |+.|++||+++++.+....... .+.++
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~--~~~~~ 176 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSW-------DKTLKFWDTRSSNPMMVLQLPE--RCYCA 176 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEET-------TSEEEEECSSCSSCSEEEECSS--CEEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccC-------CCcEEEEECCCCcEEEEEecCC--CceEE
Confidence 9999999999887665 5678899999999 889999999998 9999999999988776655433 34444
Q ss_pred EecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE----EEEecCCCcEEEEecCCc---
Q 013475 331 RHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK----LVSGSSDGSIYFYNCRSS--- 403 (442)
Q Consensus 331 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~----l~~g~~dg~i~iwd~~~~--- 403 (442)
.+. ...+++++.++.+.+|++........ ............+.+.+++.. +++++.||.|++||+...
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFR---RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEE---ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhh---hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 444 56889999999999999987543321 111122233455666655544 999999999999999887
Q ss_pred eeeEeeeccCC------------ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 404 ELERKIKAYEQ------------ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 404 ~~~~~~~~~~~------------~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.+..+.+|.. .|++++|+|++ .+|++++.||.|+|||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWD 301 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEE
Confidence 56777888765 79999999998 7999999999999997
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.8e-31 Score=236.42 Aligned_cols=251 Identities=18% Similarity=0.312 Sum_probs=205.4
Q ss_pred CCcceecc--cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475 134 PGRLSTAL--CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 134 ~~~~~~~l--~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
.+++++.+ .+|...|++++|+|+ +++|++|+.||+|+|||+.+ .+.+..+.+|...+.++.+ ++..+++++.+
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~ 128 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSW--NSYILSSGSRS 128 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeec--CCCEEEEEecC
Confidence 34555544 578889999999999 99999999999999999954 5788888999998887766 56799999999
Q ss_pred CcEEEEECCCCcE-EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce----EEEeccCCCCEeEEEEeeC
Q 013475 212 CSSRLVDVEKGIE-TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV----AHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 212 ~~v~vwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~ 285 (442)
+.+++|+...... +..+. |...+..+.+.+++ .+|++++.||.|++||+++++. ......+.+.|.++.++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred CceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 9999999987643 34444 88999999999996 8999999999999999987653 3555677889999999987
Q ss_pred CCEE---EeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe--CCCeEEEeeCCCCcccc
Q 013475 286 GKQF---VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS--NGNYIAIFSSTPPFRLD 360 (442)
Q Consensus 286 ~~~l---~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~i~~~~~~~~~~ 360 (442)
+..+ ++++. ++.|++||.+........ .+...+..+.+++.+..+++++ .|+.|++||+.+...+
T Consensus 208 ~~~~~~~~~~~~-------~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~- 277 (318)
T 4ggc_A 208 QSNVLATGGGTS-------DRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV- 277 (318)
T ss_dssp STTEEEEEECTT-------TCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-
T ss_pred CCcEEEEEecCC-------CCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE-
Confidence 6543 34555 899999999887655433 3455688899999999888754 7899999999887655
Q ss_pred cceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 361 KFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 361 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
..+.+ |...|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus 278 --~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 278 --AELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp --EEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred --EEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 44444 45789999999999999999999999999987543
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.6e-31 Score=246.31 Aligned_cols=231 Identities=19% Similarity=0.300 Sum_probs=202.2
Q ss_pred eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC
Q 013475 186 LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG 264 (442)
Q Consensus 186 ~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 264 (442)
..+|...|.++.| ++++|++|+.||.|++||+.+++....+. |...|.+++| + ..+|++|+.||.|++||++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCC
Confidence 3457778999988 78899999999999999999999998888 8899999999 4 489999999999999999999
Q ss_pred ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc--eeeccccceeeeEEecCCCCeeEEE
Q 013475 265 KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS--KQVYVEAYTCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (442)
+.+..+..|...|.++.|+ +..+++++. |+.|++||++++.... .....+...+.++.+ ++.+++++
T Consensus 204 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFN--NGMMVTCSK-------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp CEEEEECCCCSCEEEEECC--TTEEEEEET-------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred cEEEEEcCCCCcEEEEEEc--CCEEEEeeC-------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 9999999999999999996 568999998 9999999999876553 344556678888888 78999999
Q ss_pred eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 343 SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 343 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
+.|+.|++||+.+.... ..+.. +...+.++.| ++++|++|+.||.|++||+.+++++..+.+|...|.+++|
T Consensus 273 ~~dg~i~vwd~~~~~~~---~~~~~--~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~- 344 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFV---RTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 344 (435)
T ss_dssp ETTSEEEEEETTTCCEE---EEEEC--CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-
T ss_pred eCCCeEEEEECCcCcEE---EEEcC--CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-
Confidence 99999999999887554 33333 3466888888 5789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeeCCCcEEEcC
Q 013475 423 PILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 423 p~~~~~l~s~~~dg~i~iwd 442 (442)
++ .+|++|+.||.|+|||
T Consensus 345 -~~-~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 345 -DN-KRIVSGAYDGKIKVWD 362 (435)
T ss_dssp -CS-SEEEEEETTSCEEEEE
T ss_pred -cC-CEEEEEeCCCcEEEEE
Confidence 45 6999999999999997
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.6e-31 Score=230.76 Aligned_cols=292 Identities=11% Similarity=0.103 Sum_probs=197.6
Q ss_pred cceeccccccc----ceEEEEeeCCCCC--EEEEecCCCcEEEEEcccC-CcceeeeeccCCCceeEEEeCCCCCEEEEE
Q 013475 136 RLSTALCHHTK----AVNSINWSPTHAH--LLASAGMDQSICIWNVWSR-DQKLARVLNFHSAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 136 ~~~~~l~~h~~----~V~~~~~s~~~~~--~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 208 (442)
+++..|+.-.+ .+.++-|-..+.+ .+++++. ..|++|+..+. ..+++.++.+|+.+|..+.|.||..-|+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 45555655443 3556666554222 5667764 69999999654 227888999999999999999964433322
Q ss_pred ec-CCcE-EEEEC--CC-----CcEEEeeeCCcceEEEEEccCCCCEEEEee--CCCcEEEEEC-CCCceEEEeccCCCC
Q 013475 209 GY-DCSS-RLVDV--EK-----GIETQSFREELAVRVVKFHPENSNLFLSGG--SKGLLRLWDI-RTGKVAHEYIQSLGP 276 (442)
Q Consensus 209 ~~-d~~v-~vwd~--~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~ 276 (442)
.- +=.+ .++-+ .. ++.+..-.+...+..+ ++ .+++.+++ .|+.|++|++ .+++.+..+..|...
T Consensus 105 ~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp EECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred eeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 21 1111 11111 10 1111111122333333 44 35655543 5999999999 458888888999999
Q ss_pred EeEEEEee---CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc--cceeeeEEecCCCCee------------
Q 013475 277 ILDVEFTI---NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE--AYTCPCVRHHPFDPYF------------ 339 (442)
Q Consensus 277 i~~~~~~~---~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l------------ 339 (442)
++.++|++ ++..|++++. |++|+|||+++++.+.++..++ ...+.+++|+|++.++
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~-------D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTI-------MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEET-------TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eeeEEeeccCCCCceEEEecC-------CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 99999999 7899999998 9999999999998887775433 2356677899999887
Q ss_pred EEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCcee-E
Q 013475 340 VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACI-D 418 (442)
Q Consensus 340 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~ 418 (442)
++|+.|++|++||..++..+..+.......+...+.+..+ ++.++++|+.|++|+|||+.+++++.++.+|...+. .
T Consensus 254 aSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 254 SLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp ----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred eccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 4577899999999988765422110001122233333333 478999999999999999999999999999987665 5
Q ss_pred EEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 419 VAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 419 ~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++|+|++ ++|++|+.|++|+|||
T Consensus 332 vafSPDG-~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 332 VKWSGTD-SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEECSSS-SEEEEECTTSCEEEEE
T ss_pred EEECCCC-CEEEEEECCCcEEEec
Confidence 8999999 7999999999999997
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=246.04 Aligned_cols=249 Identities=11% Similarity=0.085 Sum_probs=201.5
Q ss_pred cccccccceEEEEeeCCCCCEE-EEecCCCcEEEEEcccCCcceeeeec--cCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLL-ASAGMDQSICIWNVWSRDQKLARVLN--FHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
.+.+|.+.|++++|+|+ +++| ++|+.||.|+|||+..........+. .|...|.+++|+|++++|++++.||.|++
T Consensus 97 ~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ---CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 44678999999999999 7775 89999999999999621345555554 57789999999999999999999999999
Q ss_pred EECCCCcEEE----eee-CCcceEEEEEccC---CCCEEEEeeCCCcEEEEECCCCceEEE-eccCCCCEeEEEEeeCCC
Q 013475 217 VDVEKGIETQ----SFR-EELAVRVVKFHPE---NSNLFLSGGSKGLLRLWDIRTGKVAHE-YIQSLGPILDVEFTINGK 287 (442)
Q Consensus 217 wd~~~~~~~~----~~~-~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 287 (442)
|++.+++... .+. |...|++++|+|+ + .+|++++.|+.|++||+++++.+.. +.+|...|.+++|+ +++
T Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred EecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence 9998877553 444 8899999999998 5 8999999999999999999988877 56899999999999 999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeec------------------------cccceeeeEEecCCCCeeEEEe
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY------------------------VEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
+|++++. |+.|++||+++++.+..+.. .....+..+.++|+++++++++
T Consensus 254 ~l~s~~~-------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 254 LLLSAGG-------DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp EEEEEES-------SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred EEEEEeC-------CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 9999998 99999999999876655542 1234688999999999999998
Q ss_pred -CCCeEEEeeC--CCCcccccceeEeecccccCcEEEEEccCCCEEEEecC------CCcEEEEecC
Q 013475 344 -NGNYIAIFSS--TPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS------DGSIYFYNCR 401 (442)
Q Consensus 344 -~~~~i~i~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~iwd~~ 401 (442)
.++.|++|++ .....+..+..+..+ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8999999999 444333333444443 66899999996544444443 4558888764
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-32 Score=244.29 Aligned_cols=229 Identities=13% Similarity=0.071 Sum_probs=185.4
Q ss_pred EeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC---------CCceE
Q 013475 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR---------TGKVA 267 (442)
Q Consensus 197 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~ 267 (442)
.+..++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888877 456777888875 8999999999999665 44544
Q ss_pred EEec-cCCCCEeEEEEee--CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC
Q 013475 268 HEYI-QSLGPILDVEFTI--NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 268 ~~~~-~~~~~i~~~~~~~--~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
..+. .|.+.|.+++|+| ++++|++++. |+.|++||+++++........+...+.+++|+|++.++++|+.
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~ 190 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADN-------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP 190 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEET-------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeC-------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence 4443 6668899999999 9999999998 9999999999988755554555667999999999999999999
Q ss_pred CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec---cCCcee--EE
Q 013475 345 GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA---YEQACI--DV 419 (442)
Q Consensus 345 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~ 419 (442)
|+.|++||+++..... ..+.. .|...|.+++|+|+|.+|++++ |+.|++||+++++.+..+.. |...+. ++
T Consensus 191 dg~i~iwd~~~~~~~~--~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 191 DGILDVYNLSSPDQAS--SRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp TSCEEEEESSCTTSCC--EECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred CCEEEEEECCCCCCCc--cEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence 9999999999876541 12222 2557899999999999999999 55999999999877665554 434444 59
Q ss_pred EEcCCCCCEEEEeeC-CCcEEEcC
Q 013475 420 AFHPILPNIIGSCSW-NGDVSVYE 442 (442)
Q Consensus 420 ~~~p~~~~~l~s~~~-dg~i~iwd 442 (442)
+|+|++ .+|++++. |+.|+|||
T Consensus 267 ~~~~~g-~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 267 DIDDSG-KNMIAYSNESNSLTIYK 289 (343)
T ss_dssp EECTTS-SEEEEEETTTTEEEEEE
T ss_pred EECCCC-CEEEEecCCCCcEEEEE
Confidence 999999 79999888 99999995
No 121
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-31 Score=237.80 Aligned_cols=212 Identities=18% Similarity=0.259 Sum_probs=178.2
Q ss_pred ceecccccccceEEEEeeCC-CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC--CCEEEEEecCCc
Q 013475 137 LSTALCHHTKAVNSINWSPT-HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ--GLFVLSCGYDCS 213 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~d~~ 213 (442)
++..|.+|.+.|++++|+++ ++++|++|+.|++|+|||+.++.......+.+|...|.+++|+|+ +.+|++++.|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 56789999999999999863 378999999999999999976544566778889999999999997 789999999999
Q ss_pred EEEEECCCCcEE---Eeee-CCcceEEEEEccCC----------------CCEEEEeeCCCcEEEEECCCC---ceEEEe
Q 013475 214 SRLVDVEKGIET---QSFR-EELAVRVVKFHPEN----------------SNLFLSGGSKGLLRLWDIRTG---KVAHEY 270 (442)
Q Consensus 214 v~vwd~~~~~~~---~~~~-~~~~v~~~~~~~~~----------------~~~l~~~~~dg~i~iwd~~~~---~~~~~~ 270 (442)
|++||+..+... ..+. |...+.+++|+|+. ..+|++|+.|+.|++||++.. +.+..+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 999999876422 2222 77889999999873 268999999999999999755 466788
Q ss_pred ccCCCCEeEEEEeeCC----CEEEeccCCCCCcCCCCeEEEEeCCCCc---ccceeeccccceeeeEEecCCCCeeEEEe
Q 013475 271 IQSLGPILDVEFTING----KQFVSSSDVSGSNMSENSIVVWDVSREV---PLSKQVYVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~----~~l~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
.+|...|.+++|+|++ .+|++++. |++|++||+.... ........+...+.+++|+|++.+|++++
T Consensus 209 ~~h~~~V~~v~~sp~~~~~~~~las~s~-------D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 209 EAHSDWVRDVAWAPSIGLPTSTIASCSQ-------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp BCCSSCEEEEECCCCSSCSCCEEEEEET-------TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred ccCCCceEEEEecCCCCCCCceEEEEcC-------CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence 8999999999999986 88999998 9999999997631 11222334567899999999999999999
Q ss_pred CCCeEEEeeCCC
Q 013475 344 NGNYIAIFSSTP 355 (442)
Q Consensus 344 ~~~~i~i~~~~~ 355 (442)
.|+.|++|+...
T Consensus 282 ~D~~v~lw~~~~ 293 (316)
T 3bg1_A 282 GDNKVTLWKESV 293 (316)
T ss_dssp SSSCEEEEEECT
T ss_pred CCCeEEEEEECC
Confidence 999999999764
No 122
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=2.1e-30 Score=235.56 Aligned_cols=262 Identities=15% Similarity=0.198 Sum_probs=188.2
Q ss_pred cceecccccccceEEEEeeCC-CCCEEEEecCCCcEEEEEcccCCc-------ceeeeeccCCCceeEEEeCCC--CCEE
Q 013475 136 RLSTALCHHTKAVNSINWSPT-HAHLLASAGMDQSICIWNVWSRDQ-------KLARVLNFHSAAVNDVKWSQQ--GLFV 205 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~~~~--~~~l 205 (442)
+....+.+|.+.|++++|+|. ++++|++|+.||.|++||+..+.. .....+..|...|.+++|+|+ +++|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 467788999999999999993 289999999999999999965432 557778889999999999999 9999
Q ss_pred EEEecCCcEEEEECCCCcEEEee--------------eCCcceEEEEEccC--CCCEEEEeeCCCcEEEEECCCCce--E
Q 013475 206 LSCGYDCSSRLVDVEKGIETQSF--------------REELAVRVVKFHPE--NSNLFLSGGSKGLLRLWDIRTGKV--A 267 (442)
Q Consensus 206 ~s~~~d~~v~vwd~~~~~~~~~~--------------~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~ 267 (442)
++++.|+.|++||+.+++.+..+ .+...+.+++|+|+ +..+|++++.++.+.+|+...++. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 99999999999999987654332 25678999999997 348999999999998888877764 6
Q ss_pred EEeccCCCCEeEEEEeeCC----CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe
Q 013475 268 HEYIQSLGPILDVEFTING----KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
..+.+|...|.+++|+|++ ++|++++. |+.|++||++......... ............+....+..+.
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCK-------DGRIRIFKITEKLSPLASE-ESLTNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEET-------TSCEEEEEEEECC-----------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcC-------CCeEEEEeCCCCcCccccC-CcccceeccCCCcccccccccc
Confidence 7788899999999999998 89999998 9999999998754332211 1111222223333333333322
Q ss_pred ----CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee
Q 013475 344 ----NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 344 ----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
....+.+|+... ...+..+. .+...|++++|+|++++|++|+.||.|+|||+.+++.+..+.
T Consensus 280 ~~~~~~~~~~~~~~~~---~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 280 SDSNTEEKAELQSNLQ---VELLSEHD--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -----------CCSEE---EEEEEEEC--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred cccccceeeeeccccc---ccEEEEEe--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 222333333222 22223333 345779999999999999999999999999999876554443
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.3e-29 Score=235.10 Aligned_cols=279 Identities=12% Similarity=0.054 Sum_probs=218.3
Q ss_pred cccceEEEE---eeCCCCCEEEE--------------ecCCCcEEEEEccc--CCcceeeeeccCCCceeEEEeCCCCCE
Q 013475 144 HTKAVNSIN---WSPTHAHLLAS--------------AGMDQSICIWNVWS--RDQKLARVLNFHSAAVNDVKWSQQGLF 204 (442)
Q Consensus 144 h~~~V~~~~---~s~~~~~~l~s--------------~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~ 204 (442)
....+..++ |+++ ++.++. ++.++.+.||.++. +.......+..+ ..+.+++|+|++.+
T Consensus 59 ~~~g~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDE-KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTT-CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCC-CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeE
Confidence 345677788 8887 554443 23344345565533 333555666644 55679999997778
Q ss_pred EEEEecCCcEEEEECCCCcEEEeee------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEe
Q 013475 205 VLSCGYDCSSRLVDVEKGIETQSFR------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPIL 278 (442)
Q Consensus 205 l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 278 (442)
+++++.++.|++||+.+++....+. |...+.+++|++++ .++++++.|+.|++||+++++.+..+..|...+.
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 8888889999999999998886432 67789999999985 8999999999999999999999999988889999
Q ss_pred EEEEeeCCCEEE-eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe--------CCCeEE
Q 013475 279 DVEFTINGKQFV-SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS--------NGNYIA 349 (442)
Q Consensus 279 ~~~~~~~~~~l~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~i~ 349 (442)
+++|++++++++ +++. ++.|++||+++++.+..... ...+.++.|+|+++++++++ .++.|+
T Consensus 216 ~~~~~~~~~~l~~~~~~-------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~ 286 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNWI-------SEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG 286 (433)
T ss_dssp EEEEETTTTEEEEEETT-------TTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred EEEEcCCCCEEEEEecC-------CCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence 999999999885 4445 89999999998776554433 34588999999999999887 588999
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEE-EEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCE
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKL-VSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNI 428 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 428 (442)
+||+.+......+ .+...+..++|+|+++++ ++++.|+.|++||+.+++.+..+. +...+.+++|+|++ .+
T Consensus 287 ~~d~~~~~~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg-~~ 358 (433)
T 3bws_A 287 IYSMDKEKLIDTI------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG-KY 358 (433)
T ss_dssp EEETTTTEEEEEE------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS-SE
T ss_pred EEECCCCcEEeec------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC-CE
Confidence 9999876443221 122457889999999755 566899999999999999888776 67789999999998 67
Q ss_pred EEEeeC---------------CCcEEEcC
Q 013475 429 IGSCSW---------------NGDVSVYE 442 (442)
Q Consensus 429 l~s~~~---------------dg~i~iwd 442 (442)
|++++. ||.|++||
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred EEEEecCCCccccccccccccceEEEEEE
Confidence 777765 57999996
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4.5e-28 Score=232.08 Aligned_cols=294 Identities=12% Similarity=0.137 Sum_probs=222.8
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCC----CCCEEEEEec
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQ----QGLFVLSCGY 210 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~~~ 210 (442)
++++.++..+.. +.+++|+|| +++|++++.|++|++||+...+.+.+..+. +...+..++|+| +|++|++++.
T Consensus 169 ~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 169 KKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp CCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred ceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEc
Confidence 455666663333 899999999 999999999999999999322346667777 566789999999 9999999985
Q ss_pred -CCcEEEEECCCCcEEEeeeC------------CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE--EeccCCC
Q 013475 211 -DCSSRLVDVEKGIETQSFRE------------ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH--EYIQSLG 275 (442)
Q Consensus 211 -d~~v~vwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~ 275 (442)
+++|.+||..+++++..+.. ...+..+.+++++..++++...++.|.+||+.+.+.+. .+ .+..
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~ 324 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAP 324 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCS
T ss_pred cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCc
Confidence 89999999999999888763 22688999999887888888899999999998765433 33 3456
Q ss_pred CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc---ccceeeeEEecCC-CCeeEEEe-CCCeEEE
Q 013475 276 PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV---EAYTCPCVRHHPF-DPYFVAQS-NGNYIAI 350 (442)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~~~~-~~~~i~i 350 (442)
.+.++.|+|+|++|+++.. .+++|.+||..+++.+..+... +......+ ++|+ +..++++. .++.|.+
T Consensus 325 ~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp SCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred CccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence 7889999999998765542 1899999999998876665432 22222222 4677 55555554 5799999
Q ss_pred eeCCCCcc----cccceeEeecccccCcEEEEEccCCCEEEEec-------CCCcEEEEecCCceee-Eee--------e
Q 013475 351 FSSTPPFR----LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-------SDGSIYFYNCRSSELE-RKI--------K 410 (442)
Q Consensus 351 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~dg~i~iwd~~~~~~~-~~~--------~ 410 (442)
|+..+... ...++.+..+. ..+..+.|+|+|++|++++ .+++|.|||+.+++.. ..+ .
T Consensus 398 ~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~ 475 (543)
T 1nir_A 398 IGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG 475 (543)
T ss_dssp EECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred EEeCCCCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC
Confidence 99987321 23345555443 4467899999999999987 2679999999998876 443 3
Q ss_pred ccCCceeEEEEcCCCCCEEEEe-----eCCCcEEEcC
Q 013475 411 AYEQACIDVAFHPILPNIIGSC-----SWNGDVSVYE 442 (442)
Q Consensus 411 ~~~~~v~~~~~~p~~~~~l~s~-----~~dg~i~iwd 442 (442)
.+...+..++|+|+|. .|+.+ +.|+.|.|||
T Consensus 476 ~~~~~~~~~~~~~~g~-~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 476 EGAKRVVQPEYNKRGD-EVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp SSCCEEEEEEECSSSS-EEEEEEECCTTSCCEEEEEE
T ss_pred CCCCceEeccCCCCCC-EEEEEeecCCCCCCeEEEEE
Confidence 4567899999999995 55544 2479999997
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.3e-29 Score=233.23 Aligned_cols=209 Identities=14% Similarity=0.186 Sum_probs=177.0
Q ss_pred EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----------CceEEEeccCCCCEeEEEEeeCCC-EEEecc
Q 013475 225 TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----------GKVAHEYIQSLGPILDVEFTINGK-QFVSSS 293 (442)
Q Consensus 225 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 293 (442)
...+.|.+.|++++|+|++..+|++++.||.|++||+.+ .+.+..+.+|...|.+++|++++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344558999999999998568999999999999999986 567788899999999999999998 999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCccc------ceeeccccceeeeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 294 DVSGSNMSENSIVVWDVSREVPL------SKQVYVEAYTCPCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
. ||.|++||+...... ......+...+.+++|+| ++.+|++++.++.|++||++..........+.
T Consensus 202 ~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 202 D-------DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp T-------TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred C-------CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 8 999999999874321 223335667899999999 67788899999999999999764333334444
Q ss_pred ecccccCcEEEEEccCCC-EEEEecCCCcEEEEecCC-ceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 367 SHGVSGFPIKCSFSLDGE-KLVSGSSDGSIYFYNCRS-SELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 367 ~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+...+.+++|+|++. +|++|+.||.|++||+++ ...+..+..|...|++++|+|++..+|++++.||.|+|||
T Consensus 275 --~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 275 --AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp --CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred --cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 3446799999999987 688999999999999998 5678889999999999999999867899999999999996
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=5.3e-29 Score=231.54 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=213.1
Q ss_pred cccceEEEEeeCCCCCEEEEec----CCC----cEEEEEc--ccCCcceeeeeccCCCceeEEEeCC-------------
Q 013475 144 HTKAVNSINWSPTHAHLLASAG----MDQ----SICIWNV--WSRDQKLARVLNFHSAAVNDVKWSQ------------- 200 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~----~dg----~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~~~~------------- 200 (442)
+...|....|.+.+.+++++|+ .|| .|+|||+ .+++......+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3457888899999677887886 467 8999999 7764333466888988888887764
Q ss_pred -CCCEEEEEecC------CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC---cEEEEECCCCceEEEe
Q 013475 201 -QGLFVLSCGYD------CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG---LLRLWDIRTGKVAHEY 270 (442)
Q Consensus 201 -~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 270 (442)
.+..++.++.+ +.|++||++.+.......+...+.+++|+|+| ..|++++.++ .|++||+.+++.. .+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~-~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR-QV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence 15567666654 79999999866554444588899999999997 7788887775 8999999988765 56
Q ss_pred ccCCCCEeEEEEeeCCCEEE-eccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-C--
Q 013475 271 IQSLGPILDVEFTINGKQFV-SSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-N-- 346 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~-~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-- 346 (442)
..+...+.+++|+|||++|+ +++. ..+..|++||+.+++. .....+...+.++.|+|++++|++++.+ +
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~-----~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSK-----TGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECT-----TSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ecCCCcccCEEEcCCCCEEEEEEec-----CCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 66778999999999999888 5543 0034599999988754 2333455678899999999999987763 4
Q ss_pred eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC---CcEEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 347 YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD---GSIYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 347 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
.|++||..++... .+. .+...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..+. .+.+++|+|
T Consensus 292 ~i~~~d~~~~~~~----~l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 292 QVYKVNINGGAPQ----RIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP 363 (415)
T ss_dssp EEEEEETTSSCCE----ECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT
T ss_pred EEEEEECCCCCEE----EEe--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC
Confidence 7888888775421 111 123457789999999999988764 58999999988764 455554 899999999
Q ss_pred CCCCEEEEeeCCC---cEEEcC
Q 013475 424 ILPNIIGSCSWNG---DVSVYE 442 (442)
Q Consensus 424 ~~~~~l~s~~~dg---~i~iwd 442 (442)
++ ++|++++.|+ .|++||
T Consensus 364 dg-~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 364 NG-TMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp TS-SEEEEEEEETTEEEEEEEE
T ss_pred CC-CEEEEEEcCCCccEEEEEE
Confidence 99 6788777776 688885
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.1e-27 Score=229.29 Aligned_cols=276 Identities=13% Similarity=0.121 Sum_probs=216.5
Q ss_pred EeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEEC--CCCcEEEeee
Q 013475 152 NWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV--EKGIETQSFR 229 (442)
Q Consensus 152 ~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~--~~~~~~~~~~ 229 (442)
+|+|+ +.++++++.|++|.+||..+ .+++..+..+.. +..++|+|++++|++++.|++|++||+ .+++.+..+.
T Consensus 144 ~~~p~-~~~~vs~~~d~~V~v~D~~t--~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLP-NLFSVTLRDAGQIALVDGDS--KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGG-GEEEEEEGGGTEEEEEETTT--CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCC-CEEEEEEcCCCeEEEEECCC--ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 38898 88999999999999999854 466777773333 899999999999999999999999999 8899999888
Q ss_pred CCcceEEEEEcc----CCCCEEEEee-CCCcEEEEECCCCceEEEeccC-----------CCCEeEEEEeeCCCEEE-ec
Q 013475 230 EELAVRVVKFHP----ENSNLFLSGG-SKGLLRLWDIRTGKVAHEYIQS-----------LGPILDVEFTINGKQFV-SS 292 (442)
Q Consensus 230 ~~~~v~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~-~~ 292 (442)
+...+..++|+| +| +++++++ .+++|.+||..+++++..+..+ ...+..+.+++++..++ +.
T Consensus 220 ~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 888899999999 97 6666665 5899999999999988877542 23788999999776654 44
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCcccccceeEeecccc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
.. ++.|.+||+.+.+.+.............+.|+|+++++++++ .++.|.+||..++.....+..- ...|.
T Consensus 299 ~~-------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-~~ph~ 370 (543)
T 1nir_A 299 KE-------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHP 370 (543)
T ss_dssp TT-------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSBCC
T ss_pred CC-------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC-CCCCC
Confidence 54 899999999887655422333445677899999999877654 5899999999987654322210 01122
Q ss_pred cCcEEEEEccC-CCEEEEec-CCCcEEEEecCC-------ceeeEeeeccCCceeEEEEcCCCCCEEEEee-------CC
Q 013475 372 GFPIKCSFSLD-GEKLVSGS-SDGSIYFYNCRS-------SELERKIKAYEQACIDVAFHPILPNIIGSCS-------WN 435 (442)
Q Consensus 372 ~~v~~~~~s~~-g~~l~~g~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-------~d 435 (442)
+....+ ++|+ |.+++++. .|++|.|||+.+ +++++++.+|...+..++|+|++ ++|++++ .+
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARIS 448 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHH
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccC
Confidence 222232 4676 66677765 689999999998 89999999999899999999999 6888876 37
Q ss_pred CcEEEcC
Q 013475 436 GDVSVYE 442 (442)
Q Consensus 436 g~i~iwd 442 (442)
++|.|||
T Consensus 449 ~~v~v~d 455 (543)
T 1nir_A 449 QSVAVFD 455 (543)
T ss_dssp TCEEEEE
T ss_pred ceEEEEE
Confidence 8999997
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=8.4e-28 Score=223.47 Aligned_cols=272 Identities=13% Similarity=0.128 Sum_probs=211.3
Q ss_pred CCcce--ecccccccceEEEEeeCCC-------------CCEEEEecCC------CcEEEEEcccCCcceeeeeccCCCc
Q 013475 134 PGRLS--TALCHHTKAVNSINWSPTH-------------AHLLASAGMD------QSICIWNVWSRDQKLARVLNFHSAA 192 (442)
Q Consensus 134 ~~~~~--~~l~~h~~~V~~~~~s~~~-------------~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~ 192 (442)
.++.+ ..+.+|...+..+++++.+ +..++.++.+ +.|++||+.. .....+.+|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---~~~~~l~~~~~~ 180 (415)
T 2hqs_A 104 PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---YNQFVVHRSPQP 180 (415)
T ss_dssp TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS---CSCEEEEEESSC
T ss_pred CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC---CCCEEEeCCCCc
Confidence 34444 5588999988888887510 3345554443 7999999853 334566679999
Q ss_pred eeEEEeCCCCCEEEEEecCC---cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc--EEEEECCCCceE
Q 013475 193 VNDVKWSQQGLFVLSCGYDC---SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL--LRLWDIRTGKVA 267 (442)
Q Consensus 193 v~~l~~~~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~ 267 (442)
|.+++|+|+|++|++++.++ .|++||+.+++......+...+.+++|+|+|..++++++.++. |++||+.+++.
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~- 259 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI- 259 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence 99999999999999999875 9999999999887666688899999999998445557776655 99999988765
Q ss_pred EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC--eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 268 HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN--SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
..+..|...+.+++|+|||++|++++. .++ .|.+||+.+++.. ....+...+..+.|+|++++|++++.+
T Consensus 260 ~~l~~~~~~~~~~~~spdg~~l~~~s~------~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 260 RQVTDGRSNNTEPTWFPDSQNLAFTSD------QAGRPQVYKVNINGGAPQ--RITWEGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEEC------TTSSCEEEEEETTSSCCE--ECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred EeCcCCCCcccceEECCCCCEEEEEEC------CCCCcEEEEEECCCCCEE--EEecCCCcccCeEECCCCCEEEEEECc
Confidence 567778889999999999999988774 133 7888898876532 222344577889999999999987764
Q ss_pred ---CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC---cEEEEecCCceeeEeeeccCCceeEE
Q 013475 346 ---NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG---SIYFYNCRSSELERKIKAYEQACIDV 419 (442)
Q Consensus 346 ---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~ 419 (442)
..|++||+.++... .+..+ ..+..++|+|+|++|++++.++ .|++||+. ++....+..|.+.|.++
T Consensus 332 ~g~~~i~~~d~~~~~~~----~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 332 GGQQHIAKQDLATGGVQ----VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP 403 (415)
T ss_dssp SSCEEEEEEETTTCCEE----ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE
T ss_pred CCceEEEEEECCCCCEE----EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC
Confidence 68999999876432 12222 2678999999999999988777 79999987 56677888999999999
Q ss_pred EEcCCC
Q 013475 420 AFHPIL 425 (442)
Q Consensus 420 ~~~p~~ 425 (442)
+|+|..
T Consensus 404 ~~~~~~ 409 (415)
T 2hqs_A 404 AWSPYL 409 (415)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 999974
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.1e-27 Score=207.06 Aligned_cols=254 Identities=15% Similarity=0.117 Sum_probs=175.1
Q ss_pred cceecccccccceEEEEeeCCCCCEEEEecCCCcE-EEEEcccCCc----ceeeeeccCCCceeEEEeCCCCCEEEEEe-
Q 013475 136 RLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSI-CIWNVWSRDQ----KLARVLNFHSAAVNDVKWSQQGLFVLSCG- 209 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i-~iwd~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~~- 209 (442)
+.++++++|+.+|..+.|.||.-+++..+-.+=.+ .++.+.-... .....-.+|...|..+ ++++++.+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~ 153 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT 153 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence 68899999999999999999844544443222111 1222211111 2222224455556554 4666666543
Q ss_pred -cCCcEEEEEC-CCCcEEEeee-CCcceEEEEEcc---CCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC---CEeEE
Q 013475 210 -YDCSSRLVDV-EKGIETQSFR-EELAVRVVKFHP---ENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG---PILDV 280 (442)
Q Consensus 210 -~d~~v~vwd~-~~~~~~~~~~-~~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~ 280 (442)
.|+.|++|++ .+++.+..+. |...++.++|++ + ..+|++++.|++|+|||+++++.++++.+|.. .+.++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~-~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM-QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS-TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC-CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEE
Confidence 5999999999 4577777666 788888888888 4 48999999999999999999999999986543 57778
Q ss_pred EEeeCCCEEEeccC-----CCCCcCCCCeEEEEeCCCCcccceee----ccccceeeeEEecCCCCeeEEEeCCCeEEEe
Q 013475 281 EFTINGKQFVSSSD-----VSGSNMSENSIVVWDVSREVPLSKQV----YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIF 351 (442)
Q Consensus 281 ~~~~~~~~l~~~~~-----~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~ 351 (442)
+|+|+|+++++++. ...+++.|++|++||..+++.+.... ..+...+ +..+.++.++++++.|++|++|
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEETTEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee--EccccCCCEEEEEcCCCcEEEE
Confidence 99999998865432 11233349999999999887664332 1222222 2223336788999999999999
Q ss_pred eCCCCcccccceeEeecccccCcE-EEEEccCCCEEEEecCCCcEEEEec
Q 013475 352 SSTPPFRLDKFKRYESHGVSGFPI-KCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
|+.++... ..+.+|. ..+. .++|+|||++|++|+.|++|+|||+
T Consensus 311 Dl~tGk~l---~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 311 DLLLGQCT---ALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTTCSEE---EEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCcEE---EEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99988765 3344332 3333 5899999999999999999999995
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=5.5e-27 Score=212.69 Aligned_cols=273 Identities=11% Similarity=0.118 Sum_probs=194.1
Q ss_pred CEEEEecCCCcEEEEEccc-CCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-CcEEEEECC--CCc--EEEeeeCCc
Q 013475 159 HLLASAGMDQSICIWNVWS-RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-CSSRLVDVE--KGI--ETQSFREEL 232 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~v~vwd~~--~~~--~~~~~~~~~ 232 (442)
.++++++.|+.|++|++.. +.......+. |...+.+++|+|++++|++++.+ +.|.+|+++ +++ .+..+....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 3455557899999999953 2223444444 77889999999999999998886 999999998 554 334455455
Q ss_pred ceEEEEEccCCCCEEEEeeCCCcEEEEECC---CCceEEEeccCCCCEeEEEEeeCCCEEEecc-CCCCCcCCCCeEEEE
Q 013475 233 AVRVVKFHPENSNLFLSGGSKGLLRLWDIR---TGKVAHEYIQSLGPILDVEFTINGKQFVSSS-DVSGSNMSENSIVVW 308 (442)
Q Consensus 233 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~d~~i~iw 308 (442)
.+..++|+|++..+++++..++.|.+||+. ..+.+..+..+ ..+.+++|+|+++++++++ . ++.|.+|
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~ 156 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK-------QDRICLF 156 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG-------GTEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC-------CCEEEEE
Confidence 889999999974444555568899999994 33444454443 4688999999999888776 5 8999999
Q ss_pred eCCC-Ccccc----eeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCc-ccccceeEee----cccccCcEEE
Q 013475 309 DVSR-EVPLS----KQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPF-RLDKFKRYES----HGVSGFPIKC 377 (442)
Q Consensus 309 d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~-~~~~~~~~~~----~~~~~~v~~~ 377 (442)
|+.+ ++... .........+..+.|+|+++++++++ .++.|.+|+++... .......... +.....+..+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 9987 43321 22223344677899999999776654 78999999996421 1111122211 1112346679
Q ss_pred EEccCCCEEE-EecCCCcEEEEecC----CceeeEeeeccCCceeEEEEcCCCCCEEEEee-CCCcEEEcC
Q 013475 378 SFSLDGEKLV-SGSSDGSIYFYNCR----SSELERKIKAYEQACIDVAFHPILPNIIGSCS-WNGDVSVYE 442 (442)
Q Consensus 378 ~~s~~g~~l~-~g~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 442 (442)
+|+|+|++|+ ++..++.|.+||+. +.+.+..+..+.. +.+++|+|++ ++|++++ .|+.|.+|+
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEE
Confidence 9999999887 45578999999998 3345555655444 8999999999 5666665 689999993
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=2.9e-27 Score=237.07 Aligned_cols=279 Identities=10% Similarity=0.007 Sum_probs=210.2
Q ss_pred ccceEEEEeeCCCCCEEEEecC-CC-----cEEEEEcccCCcceeeeeccCC------------------------Ccee
Q 013475 145 TKAVNSINWSPTHAHLLASAGM-DQ-----SICIWNVWSRDQKLARVLNFHS------------------------AAVN 194 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~h~------------------------~~v~ 194 (442)
...|.+++|||| |++|++++. |+ .|++||+.++ +....+..+. ..|.
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457899999999 999999988 88 8999999665 3444443332 3388
Q ss_pred EEEeCCCCCEEEEEecCCcEEEEECCCC---cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec
Q 013475 195 DVKWSQQGLFVLSCGYDCSSRLVDVEKG---IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 195 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (442)
+++|+|||++|++++. +.|++||+.++ +......+...+..++|+||| ++|+.++ ++.|++||+.+++......
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 9999999999999886 99999999998 555444577889999999997 6777766 4689999999887665444
Q ss_pred cCCCC----------------EeEEEEeeCCCEEEeccCCCCCcCCCC--------------------------------
Q 013475 272 QSLGP----------------ILDVEFTINGKQFVSSSDVSGSNMSEN-------------------------------- 303 (442)
Q Consensus 272 ~~~~~----------------i~~~~~~~~~~~l~~~~~~~~~~~~d~-------------------------------- 303 (442)
.+... +..+.|+|||++|++++. |+
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-------d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-------DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-------ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEE-------cCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 44332 478999999999998865 43
Q ss_pred -eEEEEeCCC-Ccccceeec-cccceeeeEEecCCCCeeEEEeC-----CCeEEEeeCCCCcccccceeEeeccccc---
Q 013475 304 -SIVVWDVSR-EVPLSKQVY-VEAYTCPCVRHHPFDPYFVAQSN-----GNYIAIFSSTPPFRLDKFKRYESHGVSG--- 372 (442)
Q Consensus 304 -~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~~~--- 372 (442)
.|.+||+.+ ++....... .+...+..+.| |+|++|+++.. +..|++||..++..... +..+. ..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~---~~~~~-~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL---AHETS-PTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE---EEEEC-SSCCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE---EEcCC-CCcCC
Confidence 788999987 654332222 35567889999 99999987653 56899999988754322 22221 11
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecC-CceeeEeeeccCCceeEE-EEcCCCCCEEEEeeCCC--cEEEcC
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCR-SSELERKIKAYEQACIDV-AFHPILPNIIGSCSWNG--DVSVYE 442 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~~dg--~i~iwd 442 (442)
.+..++|+|||+++++++.||.++||.++ +++ ...+..|...|..+ .|+|++..++++++.|+ .++||+
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 34578999999999999999988888765 345 77788888888887 59999944555666666 888884
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=5.6e-26 Score=205.19 Aligned_cols=278 Identities=11% Similarity=0.111 Sum_probs=198.5
Q ss_pred EEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEEECCCCcE-EEee
Q 013475 151 INWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEKGIE-TQSF 228 (442)
Q Consensus 151 ~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~-~~~~ 228 (442)
..|..+.+..+++++.++.|.+||..++ +....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 3466664666888889999999999654 5555555556667 9999999997777766 88999999999987 6666
Q ss_pred eCCcceEE-EEEccCCCCEEEEeeCCC---cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 229 REELAVRV-VKFHPENSNLFLSGGSKG---LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 229 ~~~~~v~~-~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
........ ++|+|++ .+++++..++ .|.+||+.+++.+..+..+ ....+++|+|+|++++++.. .++.
T Consensus 80 ~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~------~~~~ 151 (331)
T 3u4y_A 80 QEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDR------SSAN 151 (331)
T ss_dssp EECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEE------TTTT
T ss_pred ccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEec------CCCc
Confidence 64444455 9999997 6666655553 8999999999888777654 45689999999986655543 1578
Q ss_pred -EEEEeCCCCcccce---eeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 305 -IVVWDVSREVPLSK---QVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 305 -i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
|.+|++.....+.. ...........+.|+|+++++++ +..++.|.+||+.+......+..+. ....+..++|
T Consensus 152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~ 228 (331)
T 3u4y_A 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---TNNLPGTIVV 228 (331)
T ss_dssp EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEE
T ss_pred eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---CCCCCceEEE
Confidence 99999986443321 11123345788999999996655 4568999999998765522123332 2255778999
Q ss_pred ccCCCEEEEec-CCCcEEEEecCCcee--eEeeecc----CC---ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 380 SLDGEKLVSGS-SDGSIYFYNCRSSEL--ERKIKAY----EQ---ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 380 s~~g~~l~~g~-~dg~i~iwd~~~~~~--~~~~~~~----~~---~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+|+|++|++++ .++.|.+||+.+++. +..+..+ .. ....++|+|++..+++++..++.|.|||
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 99999776654 578899999998877 4443322 22 2356899999943445566677999996
No 133
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-27 Score=221.08 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=154.5
Q ss_pred cceecccccccceEEEEeeC--------CCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC-CEEE
Q 013475 136 RLSTALCHHTKAVNSINWSP--------THAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG-LFVL 206 (442)
Q Consensus 136 ~~~~~l~~h~~~V~~~~~s~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~ 206 (442)
..+..+.||++.|++|+|+| | +++||+|+.|++|+|||+.+. .....+..|...|.+++|+|++ .+|+
T Consensus 127 ~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 127 HVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp EEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred eeecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCCCCceEE
Confidence 34567899999999999998 6 889999999999999999554 4555566699999999999987 5899
Q ss_pred EEecCCcEEEEECCCCcEEEee--------------------------eCCcceEEEEEc-cCCCCEEEEeeCCCcEEEE
Q 013475 207 SCGYDCSSRLVDVEKGIETQSF--------------------------REELAVRVVKFH-PENSNLFLSGGSKGLLRLW 259 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~~~~~~~--------------------------~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw 259 (442)
+++.|++|++||+.+++..... .+...+.++.|. +++ ..|++++.|+.+++|
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vw 282 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRW 282 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEE
Confidence 9999999999999887644322 145667888887 564 899999999999999
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC-CCCe
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP-FDPY 338 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (442)
|+..++....+..|...+..+.+.++.+.+..... . +..+.+.+ ++.+
T Consensus 283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~------------------------~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 283 NLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-------L------------------------LGACPHPRYMDYF 331 (393)
T ss_dssp EC-------------------CCSCSEEEECSSCC-------S------------------------SCCEECSSCTTEE
T ss_pred ECccCCCCceEeeecCccccEEEccccccccccCc-------c------------------------eeEEEccCCCCEE
Confidence 99988887778777777777777666544332221 1 11112222 3445
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+++++.|+.|++||...+... ..... +...|.+++|+|||++||+++.+| +.+|.+.
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~---~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSN---SIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCC---EEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEECCCCEEEEEECCCCcEE---EEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 667888999999999877554 22333 346799999999999999998776 6666654
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=3.2e-25 Score=202.03 Aligned_cols=272 Identities=8% Similarity=0.066 Sum_probs=208.5
Q ss_pred cccceEEEEeeCCCCCEEEEecC-------CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEE
Q 013475 144 HTKAVNSINWSPTHAHLLASAGM-------DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSR 215 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~ 215 (442)
....+..++|+|+ +++|++++. ++.|.+||..+. +....+. ....+..++|+++++++++++ .++.|.
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4567889999999 777777663 568999998554 5555555 345688999999999666554 479999
Q ss_pred EEECCCCcEEEeeeCCc----------ceEEEEEccCCCCEEEEe-eCCCcEEEEECCCCceEEEeccCCCCEeEEEEee
Q 013475 216 LVDVEKGIETQSFREEL----------AVRVVKFHPENSNLFLSG-GSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI 284 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 284 (442)
+||..+++.+..+.... .+.+++|+|++..+++++ +.++.|.+||+.+++.+..+..+...+.++.|++
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence 99999999888877322 278899999974444444 3578899999999998888875656688999999
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc---ccceeeeEEecCCCCeeEEEeC-CCeEEEeeCCCCcccc
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV---EAYTCPCVRHHPFDPYFVAQSN-GNYIAIFSSTPPFRLD 360 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-~~~i~i~~~~~~~~~~ 360 (442)
+|++++++.. ++.|.+||+.+++........ ....+..++++|+++++++++. ++.|.+||..+.....
T Consensus 195 dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 195 EGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp TTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 9999999887 999999999998776655442 3345677999999998777655 5999999998765543
Q ss_pred cceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 361 KFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 361 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
.+. .. ....++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|++ ++|+.+..+
T Consensus 268 ~~~---~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~v~~~~ 334 (353)
T 3vgz_A 268 KVA---AP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADG-KTLYVSVKQ 334 (353)
T ss_dssp EEE---CS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTS-CEEEEEEEC
T ss_pred EEE---cC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCC-CEEEEEEcc
Confidence 222 11 135689999999665554 689999999999998888875 4578999999999 555444433
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.8e-25 Score=198.08 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=185.4
Q ss_pred EecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC-CcEEEeeeC--CcceEEEEE
Q 013475 163 SAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK-GIETQSFRE--ELAVRVVKF 239 (442)
Q Consensus 163 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~--~~~v~~~~~ 239 (442)
.++.|+.|++||+.++ +.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++....... ...+.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~--~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTT--EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCC--cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 4567899999998544 444 3445889999999999999999987 88999999999 877766652 367899999
Q ss_pred ccCCCCEEEEee--CCCc--EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE-eccCCCCCcCCCCeEEEEeCCCCc
Q 013475 240 HPENSNLFLSGG--SKGL--LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV-SSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 240 ~~~~~~~l~~~~--~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
+|++ .+|++++ .++. |..|++.+++ ...+..+ ..+..++|+|++++|+ ++.. ++.+.+|++....
T Consensus 93 spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~-------~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 93 SPDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIR-------DQVFDIYSMDIDS 162 (297)
T ss_dssp CTTS-SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEE-------TTEEEEEEEETTT
T ss_pred CCCC-CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECC-------CCceEEEEEECCC
Confidence 9997 7777777 3344 4555555544 3444444 3589999999999887 5666 8999999865432
Q ss_pred ccceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCC-CcccccceeEeecccccCcEEEEEccCCCEEEEecCC
Q 013475 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTP-PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD 392 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 392 (442)
........+...+.++.|+|+++++++++ .++.+.+|++.. .... ..+.. +...+..++|+|+|++|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~--~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITD--SAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCC--CSEEEEEEEECTTSSEEEEEEEE
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEec--CCcccCCeEECCCCCEEEEEEcC
Confidence 22233344556788999999999888766 588888888752 2222 22222 23457789999999999988765
Q ss_pred -----------CcEEEEecCCcee--eEeeeccCCceeEEEEcCCCCCEEEEeeCC
Q 013475 393 -----------GSIYFYNCRSSEL--ERKIKAYEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 393 -----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
+.|++||+.+++. +..+.+|...+.+++|+|++ .+|++++.|
T Consensus 238 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~ 292 (297)
T 2ojh_A 238 ADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYF 292 (297)
T ss_dssp TTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEEC
T ss_pred CCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEec
Confidence 5699999988765 44455788899999999999 677766655
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=8.6e-25 Score=197.71 Aligned_cols=261 Identities=8% Similarity=0.027 Sum_probs=197.8
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCC-C-ceeEEEeCCCCCEEEE-EecCCcEEEEECCCCcEEEeeeCCc---
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHS-A-AVNDVKWSQQGLFVLS-CGYDCSSRLVDVEKGIETQSFREEL--- 232 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~-~v~~l~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~--- 232 (442)
++|++++.++.|.+||+.+. +.+..+.... . .+..++|+|+++++++ +..++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 47899999999999999544 5555555222 1 5889999999977654 4557899999999999888777443
Q ss_pred ---ceEEEEEccCCCCEEEEee------------CCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 233 ---AVRVVKFHPENSNLFLSGG------------SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 233 ---~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
.+..++|+|+| .+++++. .++.|.+||+.+++.+..+.. ...+.++.|+|+|++|++++
T Consensus 80 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~---- 153 (337)
T 1pby_B 80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG---- 153 (337)
T ss_dssp EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES----
T ss_pred ccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC----
Confidence 67889999997 5666664 579999999998888777665 35678899999999888773
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-C-----------------------eEEEeeC
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-N-----------------------YIAIFSS 353 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-----------------------~i~i~~~ 353 (442)
+.|.+||+.+++.......... ...+.++|++..+++.... + .|.+||.
T Consensus 154 -----~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 154 -----RDLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp -----SSEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred -----CeEEEEECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 6799999998876544433221 1234788988877654433 2 4688998
Q ss_pred CCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee
Q 013475 354 TPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
.+.... . ..+ ..+...+..++|+|+|++|+++ ++.|++||+.+++.+..+.. ...+.+++|+|++ ++|++++
T Consensus 227 ~~~~~~-~-~~~--~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~ 298 (337)
T 1pby_B 227 ETGEMA-M-REV--RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDG-STVWLGG 298 (337)
T ss_dssp TTCCEE-E-EEE--EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTS-CEEEEES
T ss_pred CCCCce-E-eec--CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCC-CEEEEEc
Confidence 876543 1 112 2223457789999999999988 78999999999988887764 4568899999999 6777788
Q ss_pred CCCcEEEcC
Q 013475 434 WNGDVSVYE 442 (442)
Q Consensus 434 ~dg~i~iwd 442 (442)
.|+.|++||
T Consensus 299 ~~~~i~v~d 307 (337)
T 1pby_B 299 ALGDLAAYD 307 (337)
T ss_dssp BSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 899999996
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.5e-25 Score=224.03 Aligned_cols=285 Identities=12% Similarity=0.065 Sum_probs=197.9
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCC---ceeEEEeCCCCCEEEEEecC---------CcE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSA---AVNDVKWSQQGLFVLSCGYD---------CSS 214 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~d---------~~v 214 (442)
.+.+++|+|| |+++++ +.||+|++||+.++ +....+..|.. .|.+++|+|||++|++++.+ +.|
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4678999999 887766 68999999999665 44555665654 49999999999999999864 788
Q ss_pred EEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE--------------
Q 013475 215 RLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI-------------- 277 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-------------- 277 (442)
++||+.+++...... +...+..++|+|+| +.|+.++. +.|++||+.+++.......+...+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 899999987632222 23348899999997 66666665 789999999887766555433333
Q ss_pred ----eEEEEeeCCCEEEeccCCC---------------------------CCcCCCCeEEEEeCCCCcccceeecc----
Q 013475 278 ----LDVEFTINGKQFVSSSDVS---------------------------GSNMSENSIVVWDVSREVPLSKQVYV---- 322 (442)
Q Consensus 278 ----~~~~~~~~~~~l~~~~~~~---------------------------~~~~~d~~i~iwd~~~~~~~~~~~~~---- 322 (442)
.++.|+|||++|++++... +....+..|.+||+.+++....+...
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 7899999999999886410 00011238999999887643333322
Q ss_pred -ccceeeeEEecCCCCeeEEEeC----CCeEEEeeCCCCcccccceeEeecccccCc----EEEEEccCCCEEEE--ecC
Q 013475 323 -EAYTCPCVRHHPFDPYFVAQSN----GNYIAIFSSTPPFRLDKFKRYESHGVSGFP----IKCSFSLDGEKLVS--GSS 391 (442)
Q Consensus 323 -~~~~~~~~~~~~~~~~l~~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~g~~l~~--g~~ 391 (442)
+...+..+.|+|+|+++++... +..|++||..++..... +..+ +...+ ..++|+|||++|+. +..
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~---~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK---HEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE---EEEE-CSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE---EEec-cCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 2557889999999998876543 35799999987654321 1111 11222 37899999997775 445
Q ss_pred CC------cEEEEe-cCCce--eeEeeeccCCceeE-EEEcCCCCCEEEEee-CC--CcEEEcC
Q 013475 392 DG------SIYFYN-CRSSE--LERKIKAYEQACID-VAFHPILPNIIGSCS-WN--GDVSVYE 442 (442)
Q Consensus 392 dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~-~d--g~i~iwd 442 (442)
++ .|++|| ..+++ +...+..+...+.. ++|+|++ +.|+..+ .+ +.++||+
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEE
T ss_pred cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEE
Confidence 66 577777 34444 14555544444554 6999999 5665544 44 7888884
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=4.3e-24 Score=193.60 Aligned_cols=269 Identities=13% Similarity=0.111 Sum_probs=189.2
Q ss_pred ccccceEEEEeeCCCCCEEEEecCC-CcEEEEEcc--cCCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEEE
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMD-QSICIWNVW--SRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLVD 218 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd 218 (442)
.|...+.+++|+|+ +++|++++.+ +.|.+|++. ++....+..+..+. .+..++|+|++++|++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 47778999999999 8878777766 999999996 44444555555443 8899999999998877765 88899999
Q ss_pred CC---CCcEEEeeeCCcceEEEEEccCCCCEEEEee-CCCcEEEEECCC-CceEE----Eecc-CCCCEeEEEEeeCCCE
Q 013475 219 VE---KGIETQSFREELAVRVVKFHPENSNLFLSGG-SKGLLRLWDIRT-GKVAH----EYIQ-SLGPILDVEFTINGKQ 288 (442)
Q Consensus 219 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~ 288 (442)
+. ..+....+.....+.+++|+|++ .++++++ .++.|++||+.+ ++... .+.. ....+..++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred CCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 94 44455555666679999999997 5555555 889999999987 54432 2222 3347889999999997
Q ss_pred EEecc-CCCCCcCCCCeEEEEeCCC--Ccc--cceeec-c----ccceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCc
Q 013475 289 FVSSS-DVSGSNMSENSIVVWDVSR--EVP--LSKQVY-V----EAYTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPF 357 (442)
Q Consensus 289 l~~~~-~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~-~----~~~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~ 357 (442)
+++++ . ++.|.+||+.. +.. ...... . ....+..++|+|++++++++ ..++.|.+|++....
T Consensus 192 l~~~~~~-------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 192 AYCVNEL-------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp EEEEETT-------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEEEeCC-------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 76554 5 89999999964 322 111110 1 12245579999999988754 478999999998321
Q ss_pred -ccccceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEEEec--CCce--eeEeeeccCCceeEEEEcCCC
Q 013475 358 -RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNC--RSSE--LERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 358 -~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~--~~~~--~~~~~~~~~~~v~~~~~~p~~ 425 (442)
....+..+... ..+..++|+|+|++|++++ .++.|.+|++ .+++ .+..+.. .....+++|.++.
T Consensus 265 ~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 265 SVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp CCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred CceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 12222222222 3378899999999888887 6899999955 4554 3444443 3456777887764
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=5.3e-24 Score=193.56 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=182.6
Q ss_pred CCCcEEEEEcccCCcceee-eeccCCCceeEEEeCCCCCEEEEEec---CCcEEEEECCCCcE--EEeee-CCcceEEEE
Q 013475 166 MDQSICIWNVWSRDQKLAR-VLNFHSAAVNDVKWSQQGLFVLSCGY---DCSSRLVDVEKGIE--TQSFR-EELAVRVVK 238 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~~~~~~--~~~~~-~~~~v~~~~ 238 (442)
.++.|.+|+++....+... ....+...+..++|+|+++ |++++. ++.|++|++.+++. +..+. +...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 4567889988654444332 2334567788999999999 665554 68999999987753 33322 567788999
Q ss_pred EccCCCCEEEEee-CCCcEEEEECCC-Cc--eEEEeccC---------CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 239 FHPENSNLFLSGG-SKGLLRLWDIRT-GK--VAHEYIQS---------LGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 239 ~~~~~~~~l~~~~-~dg~i~iwd~~~-~~--~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
|+|+| ++|++++ .++.|.+|++.. +. .+..+... ...+.+++|+|+|+++++... ++.|
T Consensus 93 ~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-------~~~v 164 (347)
T 3hfq_A 93 VDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-------SDKV 164 (347)
T ss_dssp EETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-------TTEE
T ss_pred ECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-------CCEE
Confidence 99997 5555555 789999999963 32 23333221 124888999999996666665 8899
Q ss_pred EEEeCC-CCcccc--eeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCC-cccccceeEeeccc----ccCcEE
Q 013475 306 VVWDVS-REVPLS--KQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPP-FRLDKFKRYESHGV----SGFPIK 376 (442)
Q Consensus 306 ~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~----~~~v~~ 376 (442)
.+|++. ++.... ............++|+|+++++++ ...++.+.+|+++.. .............. ...+..
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 244 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA 244 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence 999998 333221 112223335677999999996666 567889999998752 22211122221111 134678
Q ss_pred EEEccCCCEEE-EecCCCcEEEEecCC---ceeeEeeeccCCceeEEEEcCCCCCEEEEeeC-CCcEEEc
Q 013475 377 CSFSLDGEKLV-SGSSDGSIYFYNCRS---SELERKIKAYEQACIDVAFHPILPNIIGSCSW-NGDVSVY 441 (442)
Q Consensus 377 ~~~s~~g~~l~-~g~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iw 441 (442)
++|+|||++|+ +...++.|.+|++.. .+.+..+..+...+.+++|+|++ ++|++++. ++.|.+|
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEE
Confidence 99999999885 555689999999973 35566666666778999999999 66666664 5899999
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=1.7e-24 Score=210.78 Aligned_cols=270 Identities=11% Similarity=0.013 Sum_probs=196.6
Q ss_pred cccceEEEEeeCCCCCEEEEecC-CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec---CCcEEEEEC
Q 013475 144 HTKAVNSINWSPTHAHLLASAGM-DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY---DCSSRLVDV 219 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~ 219 (442)
+..+|++++|+|| |++||+++. ||+++||++..+ ........+...+..++|+|| +++++++. +....+|.+
T Consensus 20 ~~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g--~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGG--ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETT--EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCC-CCeEEEEEccCCceeEEEEcCC--CcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 3567999999999 889998876 999999998433 444444433368999999999 77777765 455566554
Q ss_pred CC--CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 220 EK--GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 220 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
.. ......+.....+...+|+|++..++++.+.++.+.+||+.+++.......+ . .++.|+|||++|++++.
T Consensus 96 ~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~--- 169 (582)
T 3o4h_A 96 NTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGF--- 169 (582)
T ss_dssp ETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEE---
T ss_pred eccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEE---
Confidence 33 2222244434445577899988666666666666779999988765544333 2 78999999999998776
Q ss_pred CcCCC----CeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC--eEEEeeCCCCcccccceeEeecccc
Q 013475 298 SNMSE----NSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN--YIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 298 ~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
+ +.|++||+.+++.. ....+...+..++|+|+|+.|+++..++ .|++||..++... .+. .+.
T Consensus 170 ----~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~----~~~--~~~ 237 (582)
T 3o4h_A 170 ----FGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE----DLE--LPS 237 (582)
T ss_dssp ----EETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE----ECC--CSC
T ss_pred ----cCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE----Ecc--CCC
Confidence 5 78999999887643 2344556789999999999999888888 8999999876543 111 222
Q ss_pred cCcEEEE--------EccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCc---EEE
Q 013475 372 GFPIKCS--------FSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGD---VSV 440 (442)
Q Consensus 372 ~~v~~~~--------~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~---i~i 440 (442)
..+..++ |+|||.++++++.+|.+++|++ ++... .+.+.|.+++|+ ++ +++++++.+.. |.+
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEE
Confidence 3344556 9999999999999999999999 66554 345678999999 87 78888877743 555
Q ss_pred cC
Q 013475 441 YE 442 (442)
Q Consensus 441 wd 442 (442)
||
T Consensus 311 ~d 312 (582)
T 3o4h_A 311 LP 312 (582)
T ss_dssp ET
T ss_pred Ec
Confidence 54
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.2e-23 Score=187.05 Aligned_cols=276 Identities=11% Similarity=0.011 Sum_probs=192.5
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEe-cCCCcEEEEEcccCCcce-eeeeccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASA-GMDQSICIWNVWSRDQKL-ARVLNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
++....+..+...+ +++|+|+ +++|+++ ..++.|.+||+.++ .. ...+..+...+.+++|+|++++|+++..++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 105 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLN 105 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCCCCEEECTTSSEEEECCCSS
T ss_pred cceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCccceEECCCCCEEEEecCCC
Confidence 45556666666677 9999999 7655554 45899999999655 43 555665666666699999999999555443
Q ss_pred ---cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc-EEEEECCCCceE----EEeccCCCCEeEEEEee
Q 013475 213 ---SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL-LRLWDIRTGKVA----HEYIQSLGPILDVEFTI 284 (442)
Q Consensus 213 ---~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~----~~~~~~~~~i~~~~~~~ 284 (442)
.|.+||+.+++.+..+.......+++|+|+|..++++...++. |.+|++.....+ ............++|+|
T Consensus 106 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp 185 (331)
T 3u4y_A 106 HPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP 185 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred CcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence 8999999999999888877788999999998666777777788 999998754332 12223345689999999
Q ss_pred CCCEEEec-cCCCCCcCCCCeEEEEeCCCCcc---cceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCccc
Q 013475 285 NGKQFVSS-SDVSGSNMSENSIVVWDVSREVP---LSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRL 359 (442)
Q Consensus 285 ~~~~l~~~-~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~ 359 (442)
+|++++.+ .. ++.|.+||+.+++. +..+. ....+..++|+|++++++++. .++.|.+||..++...
T Consensus 186 dg~~l~v~~~~-------~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 186 DGNFAFVANLI-------GNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp TSSEEEEEETT-------TTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred CCCEEEEEeCC-------CCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 99966554 44 89999999998776 43333 345678899999999776654 5788999999876441
Q ss_pred ccceeEeec----c-cccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCC
Q 013475 360 DKFKRYESH----G-VSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 360 ~~~~~~~~~----~-~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 425 (442)
. +..+... . .......++|+|+|++|+++ ..++.|.+||+.... +..+......-....++|+.
T Consensus 257 ~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 257 F-VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp E-EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred e-ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence 1 1111111 1 11112458999999988655 456799999998654 33343333322234455554
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=2e-24 Score=215.33 Aligned_cols=279 Identities=9% Similarity=0.043 Sum_probs=196.7
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC----
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK---- 221 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~---- 221 (442)
..|.+++|+|| +.++++. ++.|++||+.++ +... +..+...+.+++|+|||++|+++ .|+.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~--~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLAR--KVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTT--EEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCC--ceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 7666653 599999999554 4333 33467789999999999999985 689999999998
Q ss_pred -CcEEEeeeCCcc---------------eEEEEEccCCCCEEEEee---------------------------------C
Q 013475 222 -GIETQSFREELA---------------VRVVKFHPENSNLFLSGG---------------------------------S 252 (442)
Q Consensus 222 -~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~---------------------------------~ 252 (442)
++.......... +.++.|+||| ++|++++ .
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 876655543222 4889999997 6777665 3
Q ss_pred CCcEEEEECCCCceEEEec--cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccc---e
Q 013475 253 KGLLRLWDIRTGKVAHEYI--QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAY---T 326 (442)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~---~ 326 (442)
+..|++||+.+++...... .+...+.+++|+|||++|++++... ......|.+||+.+++....... .... .
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 4679999999887654432 4556789999999999998876500 00023999999998743333322 1111 2
Q ss_pred eeeEEecC--CCCeeEEEeCCCeEEEeeCC-CCcccccceeEeecccccCcEE-EEEccCCCEEEEec-CCC----cEEE
Q 013475 327 CPCVRHHP--FDPYFVAQSNGNYIAIFSST-PPFRLDKFKRYESHGVSGFPIK-CSFSLDGEKLVSGS-SDG----SIYF 397 (442)
Q Consensus 327 ~~~~~~~~--~~~~l~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~g~-~dg----~i~i 397 (442)
+..+.|+| ++++++++..++.+.+|.++ .+... ..+.. +...+.. ++|+|+|+.|+.++ .++ .|+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~---~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI---RQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE---EECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE---EecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 46789999 99999989889988888765 22222 22222 2233555 79999998876554 444 6777
Q ss_pred EecCCceeeEeeeccCCceeEEEEcCCCCCEEEEe-eCC---CcEEEcC
Q 013475 398 YNCRSSELERKIKAYEQACIDVAFHPILPNIIGSC-SWN---GDVSVYE 442 (442)
Q Consensus 398 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d---g~i~iwd 442 (442)
||+.+++ ...+. |...+.+++|+|++ ++|+.. +.+ +.|++||
T Consensus 387 ~d~~~~~-~~~l~-~~~~~~~~~~spdg-~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 387 IDIKGGK-TKDLT-PESGMHRTQLSPDG-SAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EETTCCC-CEESC-CSSSEEEEEECTTS-SEEEEEEECSSCSCEEEEEE
T ss_pred EEcCCCC-ceecc-CCCceEEEEECCCC-CEEEEEecCCCCCcEEEEEE
Confidence 7877765 34443 66779999999999 566554 433 4688885
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.1e-24 Score=217.18 Aligned_cols=280 Identities=9% Similarity=0.000 Sum_probs=194.2
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccC--------------CCceeEEEeCCCCCEEEEEecC
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFH--------------SAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h--------------~~~v~~l~~~~~~~~l~s~~~d 211 (442)
+..+.|. + +. +++++.|+ | +||+.+++. ..+...... ...|.+++|+|| +.++.+. +
T Consensus 28 ~~~~~w~-g-~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM-G-DN-YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE-T-TE-EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc-C-Ce-EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 5567888 3 54 55556677 8 999976643 222111100 156999999999 6666654 6
Q ss_pred CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-----CceEEEeccCCCC----------
Q 013475 212 CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-----GKVAHEYIQSLGP---------- 276 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~---------- 276 (442)
+.|++||+.+++......+...+.+++|+|+| +.|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 99999999999877766677788999999997 666664 678999999998 7765544443332
Q ss_pred ----EeEEEEeeCCCEEEeccCC--------------------------CCCcCCCCeEEEEeCCCCcccceeec-cccc
Q 013475 277 ----ILDVEFTINGKQFVSSSDV--------------------------SGSNMSENSIVVWDVSREVPLSKQVY-VEAY 325 (442)
Q Consensus 277 ----i~~~~~~~~~~~l~~~~~~--------------------------~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~ 325 (442)
+.++.|+|||++|++++.. .+....+..|.+||+.+++....... .+..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 4899999999999988610 00011257899999988764333222 3456
Q ss_pred eeeeEEecCCCCeeEEEeCCC-----eEEEeeCCCCcccccceeEeecccccCcEEEEEcc--CCCEEEEecCCCcEEEE
Q 013475 326 TCPCVRHHPFDPYFVAQSNGN-----YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL--DGEKLVSGSSDGSIYFY 398 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~iw 398 (442)
.+..+.|+|+++++++++.++ .|++||..++.....+...........+..++|+| ||++|++++.||.++||
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 788999999999999877665 89999998873332211111111111235789999 99999999999999999
Q ss_pred ecC-CceeeEeeeccCCceeE-EEEcCCCCCEEEEeeCCC
Q 013475 399 NCR-SSELERKIKAYEQACID-VAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 399 d~~-~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg 436 (442)
++. +++.+..+..|...+.. ++|+|++..++++++.++
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 886 66777788878778877 799999944445555554
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2.4e-24 Score=215.98 Aligned_cols=283 Identities=9% Similarity=0.060 Sum_probs=199.7
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
..|.+++|||| |++|++++. +.|++||+.++.......+..|...+.+++|+|||++|++++ ++.|++||+.+++..
T Consensus 109 ~~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp EESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred cCcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 34899999999 898988886 899999996541113345666888999999999999999987 568999999998776
Q ss_pred EeeeCCcc-----------------eEEEEEccCCCCEEEEeeCCC---------------------------------c
Q 013475 226 QSFREELA-----------------VRVVKFHPENSNLFLSGGSKG---------------------------------L 255 (442)
Q Consensus 226 ~~~~~~~~-----------------v~~~~~~~~~~~~l~~~~~dg---------------------------------~ 255 (442)
........ +..+.|+||| +.|++++.|+ .
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 65542221 4789999997 6666665554 7
Q ss_pred EEEEECCC-CceEEEec--cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccc---eeee
Q 013475 256 LRLWDIRT-GKVAHEYI--QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAY---TCPC 329 (442)
Q Consensus 256 i~iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~ 329 (442)
|++||+.+ ++...... .+...+..++| |||++|+++... ....+..|.+||+.+++........... .+..
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS--RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE--TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec--ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 89999988 77654433 36678999999 999999876420 0112678999999987755443333222 3468
Q ss_pred EEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEE-EEccCCCEEEE-ecCCC--cEEEEecCC-ce
Q 013475 330 VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKC-SFSLDGEKLVS-GSSDG--SIYFYNCRS-SE 404 (442)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~-g~~dg--~i~iwd~~~-~~ 404 (442)
+.|+|+++++++++.++.+.+|..+..... ..+..+ ...+..+ .|+|+|+.|+. ++.++ .++||++.. +.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~---~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGKA---AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSCE---EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCCe---eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 899999998888888887777765522112 222222 3446666 59999997764 45555 899999864 55
Q ss_pred eeEeeeccCCceeEEEEcCCCCCEEEEeeCC---CcEEEc
Q 013475 405 LERKIKAYEQACIDVAFHPILPNIIGSCSWN---GDVSVY 441 (442)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iw 441 (442)
....+.. ...+..++|+|++..++++++.. +.+.+|
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 5666665 66788999999994344444333 345554
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.3e-24 Score=215.53 Aligned_cols=290 Identities=9% Similarity=-0.014 Sum_probs=199.3
Q ss_pred Ccceeccccccc---ceEEEEeeCCCCCEEEEecCC---------CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCC
Q 013475 135 GRLSTALCHHTK---AVNSINWSPTHAHLLASAGMD---------QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQG 202 (442)
Q Consensus 135 ~~~~~~l~~h~~---~V~~~~~s~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 202 (442)
++....+.+|.. .|.+++|||| |++|++++.+ +.|.+||+.++....+....+|...+..++|+|||
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG 125 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG 125 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred CcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence 344555666665 4999999999 9999988764 78889999766443333344566669999999999
Q ss_pred CEEEEEecCCcEEEEECCCCcEEEeeeC-Ccc------------------eEEEEEccCCCCEEEEeeCCC---------
Q 013475 203 LFVLSCGYDCSSRLVDVEKGIETQSFRE-ELA------------------VRVVKFHPENSNLFLSGGSKG--------- 254 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~------------------v~~~~~~~~~~~~l~~~~~dg--------- 254 (442)
++|++++. +.|++||+.+++....... ... +.+++|+||| +.|++++.|+
T Consensus 126 ~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 126 QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEEC
T ss_pred CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEee
Confidence 99999885 7999999999887766552 222 3789999997 6666665432
Q ss_pred -------------------------cEEEEECCCCceEEEeccC------CCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 255 -------------------------LLRLWDIRTGKVAHEYIQS------LGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 255 -------------------------~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
.|++||+.+++....+..+ ...+..+.|+|||+++++.... ...+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~ 280 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR---AQNVS 280 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET---TSCEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC---CCCeE
Confidence 7999999888765566543 5678999999999988766430 11257
Q ss_pred eEEEEeCCCCcccceeecccccee----eeEEecCCCCeeEE--EeCCC------eEEEee-CCCCcc--cccceeEeec
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTC----PCVRHHPFDPYFVA--QSNGN------YIAIFS-STPPFR--LDKFKRYESH 368 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~--~~~~~------~i~i~~-~~~~~~--~~~~~~~~~~ 368 (442)
.|.+||+.+++........+...+ ..+.|+|+|+.|+. ...++ .|++|+ ..+... ...+ ..
T Consensus 281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---~~- 356 (723)
T 1xfd_A 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI---TS- 356 (723)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS---CC-
T ss_pred EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe---ec-
Confidence 899999998775544333322222 37899999998775 34566 577777 333320 2111 11
Q ss_pred ccccCcEE-EEEccCCCEEEEecCC---CcEEEEecCCc--eeeEeeec---cCCceeEEEEcCCCCCEEEEeeCC
Q 013475 369 GVSGFPIK-CSFSLDGEKLVSGSSD---GSIYFYNCRSS--ELERKIKA---YEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 369 ~~~~~v~~-~~~s~~g~~l~~g~~d---g~i~iwd~~~~--~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
....+.. ++|+|||++|+..+.+ +.++||++... .....+.. |...+..++|+|++..++++++..
T Consensus 357 -~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 357 -GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp -SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred -CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 1122333 6899999999765544 78999998643 23344443 567789999999995444444433
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=5.8e-24 Score=220.35 Aligned_cols=290 Identities=11% Similarity=0.037 Sum_probs=217.3
Q ss_pred ccccCCcceecccccccce-------EEEEeeCCCCCEEEEecCC------CcEEEEEcccCCcc---------------
Q 013475 130 RSKIPGRLSTALCHHTKAV-------NSINWSPTHAHLLASAGMD------QSICIWNVWSRDQK--------------- 181 (442)
Q Consensus 130 ~~~~~~~~~~~l~~h~~~V-------~~~~~s~~~~~~l~s~~~d------g~i~iwd~~~~~~~--------------- 181 (442)
.+...+.....|..|...+ .+++|+|| |+++++++.+ ..|.+|++.++...
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD-g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG 162 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD-GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADG 162 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECTT-CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETT
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCCC-CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCC
Confidence 3344444567888899888 99999999 7788887754 35777776443211
Q ss_pred --------------------------------eeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC-CcEEEee
Q 013475 182 --------------------------------LARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK-GIETQSF 228 (442)
Q Consensus 182 --------------------------------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~ 228 (442)
....+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+
T Consensus 163 ~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l 241 (1045)
T 1k32_A 163 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH 241 (1045)
T ss_dssp EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe
Confidence 01123457788899999988 6667777889999998753 3344445
Q ss_pred eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-----------CCCCEeEEEEe-eCCCEEEeccCCC
Q 013475 229 REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-----------SLGPILDVEFT-INGKQFVSSSDVS 296 (442)
Q Consensus 229 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~~~ 296 (442)
.....+...+|+|+| ..|+.+ .++.|++||+...+ +..+.. |...+.+++|+ |||++|++++
T Consensus 242 ~~~~~~~~~~~SpDG-~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--- 315 (1045)
T 1k32_A 242 TSFTDYYPRHLNTDG-RRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--- 315 (1045)
T ss_dssp CCCCSSCEEEEEESS-SCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---
T ss_pred cCCCCcceeeEcCCC-CEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE---
Confidence 444456778999997 556655 48899999995443 345544 23468999999 9999999988
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccc-eeeeEEecCCCCeeEEEeCCCeEE-EeeCCCCcccccceeEeecccccCc
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAY-TCPCVRHHPFDPYFVAQSNGNYIA-IFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
++.|.+|++..+.... . ..+.. .+..+.|+ +++.++.++.++.+. +|+....... .+. .+...+
T Consensus 316 -----~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~----~l~--~~~~~~ 381 (1045)
T 1k32_A 316 -----RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE----KFE--ENLGNV 381 (1045)
T ss_dssp -----TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE----ECC--CCCCSE
T ss_pred -----cCEEEEEcCCCCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce----Eec--CCccce
Confidence 7899999998765332 2 23333 78899999 999999988888898 9998765321 222 334568
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCC----------cEEEcC
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNG----------DVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----------~i~iwd 442 (442)
..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+||| ++|++++.++ .|++||
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEE
Confidence 899999999999999999999999999998888777899999999999999 6787776644 899996
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=5.7e-24 Score=188.39 Aligned_cols=249 Identities=13% Similarity=0.112 Sum_probs=180.4
Q ss_pred cccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEccc-CCcceeeeeccC-CCceeEEEeCCCCCEEEEE
Q 013475 131 SKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS-RDQKLARVLNFH-SAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 131 ~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~ 208 (442)
+.........+..|.+.|.+++|+|+ +++|++++ ++.|++||+.+ + ........| ...+.+++|+|++++|+++
T Consensus 27 ~d~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 102 (297)
T 2ojh_A 27 FNIRTRKMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPDGALYAIS 102 (297)
T ss_dssp EETTTTEEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTTSSEEEEE
T ss_pred EeCCCCceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEECCCCCEEEEE
Confidence 33344445567779999999999999 88898886 78999999965 4 444444444 4788999999999999999
Q ss_pred ec--CCcEEEEE--CCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-CceEEEeccCCCCEeEEEEe
Q 013475 209 GY--DCSSRLVD--VEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 209 ~~--d~~v~vwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~ 283 (442)
+. ++.+.||. +.+++ ...+.....+..++|+|++..+++++..++.+++|++.. ......+..+...+.++.|+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 181 (297)
T 2ojh_A 103 DKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYS 181 (297)
T ss_dssp ECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEEC
T ss_pred EeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceEC
Confidence 83 34555554 45554 444555556899999999855555888899999998642 23445667777899999999
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----------CeEEEee
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----------NYIAIFS 352 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~i~i~~ 352 (442)
|++++|+.++. .++.+.+|++............+...+..+.|+|++++|++++.+ +.|++||
T Consensus 182 ~dg~~l~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 182 PDGRWIYFNSS------RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp TTSSEEEEEEC------TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CCCCEEEEEec------CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 99998876652 178899998863222223333445678889999999999887765 5799999
Q ss_pred CCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC
Q 013475 353 STPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG 393 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 393 (442)
+.+..... +..+. .+...+..++|+|+|++|++++.+.
T Consensus 256 ~~~~~~~~-~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 256 MDGGNVET-LFDLF--GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCEE-EEEEE--ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCcee-eeccC--CCCcccccceECCCCCEEEEEEecc
Confidence 98764321 12222 2345678899999999998877653
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=7.4e-24 Score=219.57 Aligned_cols=280 Identities=10% Similarity=-0.025 Sum_probs=218.6
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
....+.+|.+.+.++.|+++ .++++++.|+.+.||.+..... ....+..|. .+..++|+|||++|+++. ++.|++
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGK-DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSC-SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred CeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCC-cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 34556899999999999987 5677888899999998864322 334444454 467789999999998874 899999
Q ss_pred EECCCCcEEEeeeC------------CcceEEEEEc-cCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-CEeEEEE
Q 013475 217 VDVEKGIETQSFRE------------ELAVRVVKFH-PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-PILDVEF 282 (442)
Q Consensus 217 wd~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~ 282 (442)
||+...+.. .+.. ...+..++|+ |+| ..|++++ ++.|++|++..++.. .+..+.. .+..+.|
T Consensus 270 ~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 270 FNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGG 345 (1045)
T ss_dssp ECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECS
T ss_pred ecCCceEee-eeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeE
Confidence 999554433 4432 2368899999 997 6666666 789999999877654 4666666 8999999
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEE-EEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIV-VWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK 361 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 361 (442)
+ +|+.|+.++. ++.+. +||+..+... .+. .+...+..+.|+|+++++++++.++.|++||+.++...
T Consensus 346 s-dg~~l~~~s~-------~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~-- 413 (1045)
T 1k32_A 346 D-TKVAFIHGTR-------EGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT-- 413 (1045)
T ss_dssp S-SEEEEEEEET-------TEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--
T ss_pred c-CCCeEEEEEC-------CCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE--
Confidence 9 9999999887 78888 9999876533 222 55567889999999999999999999999999876543
Q ss_pred ceeEeecccccCcEEEEEccCCCEEEEecCCC----------cEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEE
Q 013475 362 FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG----------SIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGS 431 (442)
Q Consensus 362 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 431 (442)
.... .+...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+..++|+|+| ++|+.
T Consensus 414 -~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG-~~l~~ 488 (1045)
T 1k32_A 414 -VIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS-KNLYY 488 (1045)
T ss_dssp -EEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS-CEEEE
T ss_pred -Eecc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC-CEEEE
Confidence 1222 2345678899999999999887644 89999999887 66777888889999999999 78888
Q ss_pred eeCCCcEEEcC
Q 013475 432 CSWNGDVSVYE 442 (442)
Q Consensus 432 ~~~dg~i~iwd 442 (442)
++.++...+|+
T Consensus 489 ~s~~~~~~~~~ 499 (1045)
T 1k32_A 489 LSYRSLDPSPD 499 (1045)
T ss_dssp EESCCCCCEEC
T ss_pred EecccCCcCcc
Confidence 88877777664
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.5e-23 Score=188.01 Aligned_cols=246 Identities=11% Similarity=0.073 Sum_probs=186.9
Q ss_pred ceEEEEeeCCCCC-EEEEecCCCcEEEEEcccCCcceeeeecc-C----CCceeEEEeCCCCCEEEEEe-----------
Q 013475 147 AVNSINWSPTHAH-LLASAGMDQSICIWNVWSRDQKLARVLNF-H----SAAVNDVKWSQQGLFVLSCG----------- 209 (442)
Q Consensus 147 ~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h----~~~v~~l~~~~~~~~l~s~~----------- 209 (442)
.+.+++|+|+ ++ +++++..++.|.+||+.++ +.+..+.. + ...+.+++|+|++++|++++
T Consensus 35 ~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 35 TPMVPMVAPG-GRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCCEEECTT-SSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CccceEEcCC-CCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence 4889999999 65 4566777899999999654 44444431 1 23678999999999999886
Q ss_pred -cCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE
Q 013475 210 -YDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 210 -~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
.++.|.+||+.+++.+..+.....+.+++|+|++ ++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|+++.
T Consensus 112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~ 187 (337)
T 1pby_B 112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLA 187 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCC
T ss_pred ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccE
Confidence 5799999999999988888877778899999997 555555 67899999999988777765431 113378999987
Q ss_pred EEeccCCCCCcCCCC-----------------------eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 289 FVSSSDVSGSNMSEN-----------------------SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 289 l~~~~~~~~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
++.... .++ .|.+||+.+++........+...+..+.|+|++++++++ +
T Consensus 188 l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 188 VWNQHE------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp CCCCCT------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred Eeeecc------CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 766553 022 578999998776522222334466789999999999888 7
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE 413 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 413 (442)
+.|.+||..+..... .+. ....+.+++|+|+|++|++++.++.|++||+.+++.+..+..+.
T Consensus 260 ~~v~~~d~~~~~~~~---~~~---~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 260 NVLESFDLEKNASIK---RVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp SEEEEEETTTTEEEE---EEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CeEEEEECCCCcCcc---eec---CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 999999998764432 222 12447789999999999999999999999999999888887653
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.8e-22 Score=184.45 Aligned_cols=273 Identities=10% Similarity=0.045 Sum_probs=183.6
Q ss_pred CCEEEEec----CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC----CcEEEEECCC--CcE--E
Q 013475 158 AHLLASAG----MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD----CSSRLVDVEK--GIE--T 225 (442)
Q Consensus 158 ~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----~~v~vwd~~~--~~~--~ 225 (442)
..+++.|+ .++.|.+|+++.....+......+...+..++|+|++++|++++.+ +.|.+|+++. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34555553 4678999988654333332222267888999999999999999886 7999999876 433 2
Q ss_pred Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe------cc--------CCCCEeEEEEeeCCCEEE
Q 013475 226 QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY------IQ--------SLGPILDVEFTINGKQFV 290 (442)
Q Consensus 226 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~--------~~~~i~~~~~~~~~~~l~ 290 (442)
.... +......+++ ++..++++...++.|.+|++.....+..+ .+ +...+.+++|+|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 2333 4556777888 65444555556889999999754322111 11 122457899999999765
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcc------c------ceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVP------L------SKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPF 357 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~ 357 (442)
++.. .++.|.+|++..... + .............++|+|+++++++++ .++.|.+|++.++.
T Consensus 171 ~~~~------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 171 ADDL------GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp EEET------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred EEeC------CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 5543 278999999876442 2 122333445677899999999887766 68999999987542
Q ss_pred ccccceeEeec-ccccCcEEEEEccCCCEEEEecC--CCcEEEEecC--Cce--eeEeeeccCCceeEEEEcCCCCCEEE
Q 013475 358 RLDKFKRYESH-GVSGFPIKCSFSLDGEKLVSGSS--DGSIYFYNCR--SSE--LERKIKAYEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 358 ~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~ 430 (442)
. ..+...... .....+..++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+|++ ++|+
T Consensus 245 ~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~ 321 (361)
T 3scy_A 245 L-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLL 321 (361)
T ss_dssp E-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEE
T ss_pred e-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEE
Confidence 2 111222111 11233568999999999977665 4899999996 344 4445544 5678899999999 6666
Q ss_pred Eee-CCCcEEEc
Q 013475 431 SCS-WNGDVSVY 441 (442)
Q Consensus 431 s~~-~dg~i~iw 441 (442)
+++ .++.|.+|
T Consensus 322 ~~~~~~~~v~v~ 333 (361)
T 3scy_A 322 VACRDTNVIQIF 333 (361)
T ss_dssp EEETTTTEEEEE
T ss_pred EEECCCCCEEEE
Confidence 666 67899996
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=7.6e-23 Score=186.25 Aligned_cols=245 Identities=14% Similarity=0.075 Sum_probs=191.1
Q ss_pred CCCceeEEEeCCCCCEEEEEec-------CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEEC
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGY-------DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDI 261 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~-------d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 261 (442)
....+..++|+++++++++++. ++.|.+||..+++.+..+.....+..++|++++..++++...++.|.+||+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456789999999998888874 568999999999999988877778899999998556777777899999999
Q ss_pred CCCceEEEeccCCCC---------EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEe
Q 013475 262 RTGKVAHEYIQSLGP---------ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRH 332 (442)
Q Consensus 262 ~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 332 (442)
.+++.+..+..+... +.++.|+++|++++++.. ..++.|.+||+.+++....... ....+..+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~ 192 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-----GKESVIWVVDGGNIKLKTAIQN-TGKMSTGLAL 192 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-----SSSCEEEEEETTTTEEEEEECC-CCTTCCCCEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-----CCCceEEEEcCCCCceEEEecC-CCCccceEEE
Confidence 999988877654322 688999999998777651 0178899999998876655431 2334778999
Q ss_pred cCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC-CCcEEEEecCCceeeEeeec
Q 013475 333 HPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS-DGSIYFYNCRSSELERKIKA 411 (442)
Q Consensus 333 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~ 411 (442)
+|+++++++++.++.|.+||..+......+.. ........+..++|+|+|++|++++. ++.|.+||..+++.+..+..
T Consensus 193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 193 DSEGKRLYTTNADGELITIDTADNKILSRKKL-LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ETTTTEEEEECTTSEEEEEETTTTEEEEEEEC-CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc-CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99999999999999999999987755432221 01112345778999999998776654 58999999999998888775
Q ss_pred cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 412 YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 412 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.. ..+++|+|++..++++...++.|.+||
T Consensus 272 ~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 272 PE--SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp SS--CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CC--CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 43 367999999944556666799999996
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=9.8e-23 Score=185.17 Aligned_cols=254 Identities=11% Similarity=0.132 Sum_probs=178.0
Q ss_pred cccccceEEEEeeCCCCCEEEEecC--CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGM--DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVD 218 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd 218 (442)
..+...+..++|+|+ |++++++.. ++.|.+|++.++....+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 456677889999999 774444432 6899999996665555566556788899999999999999888 679999999
Q ss_pred CCC-Cc--EEEeeeCC----------cceEEEEEccCCCCEEEEeeCCCcEEEEECC-CCceE--EEeccC-CCCEeEEE
Q 013475 219 VEK-GI--ETQSFREE----------LAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-TGKVA--HEYIQS-LGPILDVE 281 (442)
Q Consensus 219 ~~~-~~--~~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~--~~~~~~-~~~i~~~~ 281 (442)
+.. +. .+..+... ..+.+++|+|+|. ++++...++.|++|++. +++.. ..+..+ ...+..++
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 963 32 23333322 2488999999985 77777778899999998 45432 222222 23678899
Q ss_pred EeeCCCEEEec-cCCCCCcCCCCeEEEEeCCC--Cccc--ceeeccc-----cceeeeEEecCCCCeeEE-EeCCCeEEE
Q 013475 282 FTINGKQFVSS-SDVSGSNMSENSIVVWDVSR--EVPL--SKQVYVE-----AYTCPCVRHHPFDPYFVA-QSNGNYIAI 350 (442)
Q Consensus 282 ~~~~~~~l~~~-~~~~~~~~~d~~i~iwd~~~--~~~~--~~~~~~~-----~~~~~~~~~~~~~~~l~~-~~~~~~i~i 350 (442)
|+|||++++++ .. ++.|.+|++.. +... ....... ...+..++|+|+|+++++ ...++.|.+
T Consensus 194 ~spdg~~l~v~~~~-------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 194 FSPDGQYAFLAGEL-------SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp ECTTSSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred ECCCCCEEEEEeCC-------CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 99999966664 44 88999999875 3221 1111111 135778999999998754 566899999
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC-CCcEEEE--ecCCceee
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS-DGSIYFY--NCRSSELE 406 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~iw--d~~~~~~~ 406 (442)
|++........+..+.. +...+..++|+|||++|++++. ++.|.+| |..++++.
T Consensus 267 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 267 FAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99874332222233322 2345789999999998888765 4899999 54566554
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=5.5e-23 Score=186.79 Aligned_cols=270 Identities=9% Similarity=-0.018 Sum_probs=182.7
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEeCCCCCEEEEE-ecCCcEEEEECCCCcEEEe
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQQGLFVLSC-GYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~ 227 (442)
.++++++ ++++++++.++.|.+||+.++ +....+..+. ..+..++|+|++++++++ ..++.|.+||+.+++.+..
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4567777 889999999999999999554 5555555332 267899999999866544 4689999999999988877
Q ss_pred eeCC-------cceEEEEEccCCCCEEEEeeCC------------CcEEEEECCCCce---EEEeccCCCCEeEEEEeeC
Q 013475 228 FREE-------LAVRVVKFHPENSNLFLSGGSK------------GLLRLWDIRTGKV---AHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 228 ~~~~-------~~v~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~ 285 (442)
+... ..+..++|+|+| ++|++++.+ +.|.+||+.+++. +..+..+ ..+.+++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d 158 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADD 158 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTT
T ss_pred EEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCC
Confidence 7632 237889999997 667766654 8999999987543 3333333 46889999999
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccc-----------------------eeeeEEecCCCCeeEEE
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAY-----------------------TCPCVRHHPFDPYFVAQ 342 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~ 342 (442)
|+ +++++ +.|.+||+.+++....+...... ....+.+++++......
T Consensus 159 g~-l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 159 GS-LYVAG---------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp SC-EEEES---------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred Cc-EEEcc---------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 99 55544 34999999887765543322100 22234444433211000
Q ss_pred eCCC-eEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEE
Q 013475 343 SNGN-YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVA 420 (442)
Q Consensus 343 ~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 420 (442)
.... .+..++..+... ..+........+..++|+| +|++|+++ ++.|++||+.+++.+..+.. ...+.+++
T Consensus 229 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~ 301 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKT----HTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVA 301 (349)
T ss_dssp CEEEEEEEEEETTTCCE----EEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEE
T ss_pred cccceeEEEEeccCCcE----EecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceE
Confidence 0011 112234333221 1111112334577899999 99999998 88999999999998887764 44578999
Q ss_pred EcCCCCCEEEEeeCCCcEEEcC
Q 013475 421 FHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 421 ~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+|++ ++|++++.++.|++||
T Consensus 302 ~s~dg-~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 302 FDKKG-DKLYLGGTFNDLAVFN 322 (349)
T ss_dssp ECSSS-SCEEEESBSSEEEEEE
T ss_pred ECCCC-CEEEEecCCCeEEEEe
Confidence 99998 5666678889999997
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=3.7e-23 Score=190.95 Aligned_cols=301 Identities=11% Similarity=0.040 Sum_probs=201.3
Q ss_pred ccCCcceecccccccceEE-----EEeeCCCCCEEEEecC-CCc--EEEEEcccCCcceeeeeccCCCceeEEEeCCCCC
Q 013475 132 KIPGRLSTALCHHTKAVNS-----INWSPTHAHLLASAGM-DQS--ICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203 (442)
Q Consensus 132 ~~~~~~~~~l~~h~~~V~~-----~~~s~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 203 (442)
...+..+..+..|...... .+|+|| |++|+.++. +|. |.+||+.+ ........++...+..+.|+||++
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNT--QVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTT--CEEEECCCSSCBCSSSCEECTTSS
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCC--CceEEeeeCCCCCccceEEcCCCC
Confidence 3446667778888777666 899999 887877776 674 77777744 455666666666666789999999
Q ss_pred EEEEEecCCcEEEEECCCCcEEEeeeC-CcceEEEE--EccCCCCEEEEe----------------------eCCCcEEE
Q 013475 204 FVLSCGYDCSSRLVDVEKGIETQSFRE-ELAVRVVK--FHPENSNLFLSG----------------------GSKGLLRL 258 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~v~~~~--~~~~~~~~l~~~----------------------~~dg~i~i 258 (442)
.|+.++.++.|++||+.+++....+.. ...+.... +++++ .+++.. ..+..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 999999999999999999988776663 33343333 47886 555532 23467999
Q ss_pred EECCCCceEEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-cceeeeEEecCCC
Q 013475 259 WDIRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-AYTCPCVRHHPFD 336 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 336 (442)
||+.+++.. .+..+...+..+.|+| ||+.|+...... .......|.++|+...... .+.... ...+....|+|+|
T Consensus 173 ~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 173 VDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGP-HDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSC-TTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTS
T ss_pred EECCCCceE-EeecCCccccccEECCCCCCEEEEEEecC-CCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCC
Confidence 999988654 4445557789999999 999988776410 0001347888887665432 222222 2357788999999
Q ss_pred CeeEEEeC--C---CeEEEeeCCCCcccccceeEeecccc-cCcEEEEEccCCCEEEEe---------cCCCcEEEEecC
Q 013475 337 PYFVAQSN--G---NYIAIFSSTPPFRLDKFKRYESHGVS-GFPIKCSFSLDGEKLVSG---------SSDGSIYFYNCR 401 (442)
Q Consensus 337 ~~l~~~~~--~---~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~g---------~~dg~i~iwd~~ 401 (442)
+.|+..+. + ..|++||+.++.... +..+....+. .......|+|||++|+.. ..+..|++||+.
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 98766433 2 249999998765321 1112111000 001234799999988854 456689999999
Q ss_pred CceeeEeeeccCC-----------ceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 402 SSELERKIKAYEQ-----------ACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 402 ~~~~~~~~~~~~~-----------~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+++. ..+..+.. .+.+++|+|||..+++++..+|...||
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 8765 44555555 578899999995444455567877776
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=6.4e-22 Score=180.80 Aligned_cols=267 Identities=11% Similarity=0.057 Sum_probs=182.7
Q ss_pred cccceEEEEeeCCCCCEEEEecCC----CcEEEEEcccCCc--ceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEE
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMD----QSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRL 216 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~v 216 (442)
|...+..++|+|+ +++|++++.+ +.|.+|++..... ..+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 7778889999999 8888888875 7999999865422 334444445667788888 888887776 4789999
Q ss_pred EECCCCcEEEee----eC-----------CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-------e------EE
Q 013475 217 VDVEKGIETQSF----RE-----------ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-------V------AH 268 (442)
Q Consensus 217 wd~~~~~~~~~~----~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~------~~ 268 (442)
|++.....+..+ .+ ...+.+++|+|+|..+++++..++.|++|++.... . ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754332211 11 22358899999984455666668899999887543 1 11
Q ss_pred EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce--eec--cccceeeeEEecCCCCeeEEEeC
Q 013475 269 EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK--QVY--VEAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
........+..++|+|+|++++++.. .++.|.+||+.++..... ... .+......++|+|++++++++..
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINE------IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEET------TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcC------CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 12233456789999999998776662 189999999986543211 111 11234568999999999877665
Q ss_pred C--CeEEEeeCCC-CcccccceeEeecccccCcEEEEEccCCCEEEEec-CCCcEEEEec--CCceeeEee-eccCCcee
Q 013475 345 G--NYIAIFSSTP-PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNC--RSSELERKI-KAYEQACI 417 (442)
Q Consensus 345 ~--~~i~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~--~~~~~~~~~-~~~~~~v~ 417 (442)
+ +.|.+|+++. ......+..+.. ...+..++|+|+|++|++++ .++.|.+|++ .++++.... ..+...+.
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 4 8999999862 222222222222 34577899999999888877 6788999654 566655443 22445788
Q ss_pred EEEEc
Q 013475 418 DVAFH 422 (442)
Q Consensus 418 ~~~~~ 422 (442)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88886
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.91 E-value=1.9e-22 Score=184.51 Aligned_cols=275 Identities=12% Similarity=0.080 Sum_probs=184.3
Q ss_pred EEEEecCC--CcEEEEEcccCCccee--eeec-cCCCceeEEEeCCCCCEEEEEecCCcEEEEECC-CCcEEEeeeC--C
Q 013475 160 LLASAGMD--QSICIWNVWSRDQKLA--RVLN-FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE-KGIETQSFRE--E 231 (442)
Q Consensus 160 ~l~s~~~d--g~i~iwd~~~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~--~ 231 (442)
+|+.|+.. +.|.+|+++.....+. .... .....+..++|+|++++|++++.+ .|.+|++. +++......+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35555543 5688888754433332 2221 234578899999999999999888 89999997 7766544332 2
Q ss_pred cceEEEEEccCCCC-EEEEee-------------CCCcEEEEECC-CCceEEEec----cCCCCEeEEEEeeCCCEEEec
Q 013475 232 LAVRVVKFHPENSN-LFLSGG-------------SKGLLRLWDIR-TGKVAHEYI----QSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 232 ~~v~~~~~~~~~~~-~l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~ 292 (442)
+.+.+++|+|+|.. +++++. .+|.+.+|++. +++....+. .+...+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 34567899999733 344553 68999999997 465544333 245678999999999988776
Q ss_pred cCCCCCcCCCCeEEEEeCC-CCcccc--eeecc-ccceeeeEEecCCCCeeEEEeC-CCeEEEeeCCC--CcccccceeE
Q 013475 293 SDVSGSNMSENSIVVWDVS-REVPLS--KQVYV-EAYTCPCVRHHPFDPYFVAQSN-GNYIAIFSSTP--PFRLDKFKRY 365 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~i~i~~~~~--~~~~~~~~~~ 365 (442)
.. .++.|.+||+. +++... ..... +......++|+|+++++++++. ++.|.+|+.+. +.........
T Consensus 163 ~~------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 163 DL------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp ET------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred cC------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 42 16899999998 554322 11111 2456888999999999887764 68999997653 2211000111
Q ss_pred eec-----cccc------CcEEEE-EccCCCEEEEecCCC------cEEEEecC-CceeeE---eeeccCCceeEEEEcC
Q 013475 366 ESH-----GVSG------FPIKCS-FSLDGEKLVSGSSDG------SIYFYNCR-SSELER---KIKAYEQACIDVAFHP 423 (442)
Q Consensus 366 ~~~-----~~~~------~v~~~~-~s~~g~~l~~g~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~~p 423 (442)
... .+.. .+..++ |+|||++|++++.+. .|.+|++. +++... .+..+...+..++|+|
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 111 0111 467899 999999988765432 89999996 566443 2333555678899999
Q ss_pred ---CCCCEEEEeeC-CCcEEEcC
Q 013475 424 ---ILPNIIGSCSW-NGDVSVYE 442 (442)
Q Consensus 424 ---~~~~~l~s~~~-dg~i~iwd 442 (442)
++ ++|++++. ++.|+||+
T Consensus 317 ~~~dg-~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 317 CPWSD-EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp CTTCT-TEEEEECSSSCEEEEEE
T ss_pred CCcCC-CEEEEEEcCCCeEEEEE
Confidence 78 68887775 48999995
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=5.1e-22 Score=185.11 Aligned_cols=201 Identities=11% Similarity=0.054 Sum_probs=155.4
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---------cce-----eeeeccCCCceeEEEeCCCCCEEE----
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---------QKL-----ARVLNFHSAAVNDVKWSQQGLFVL---- 206 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~-----~~~~~~h~~~v~~l~~~~~~~~l~---- 206 (442)
...++.++++++ +.++++++.|+ |+||+..... ... ...+ .+...|++++|++++++|+
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEe
Confidence 456899999999 77898998887 9998863210 000 1112 2567899999999999999
Q ss_pred EEecCCcEEEEECCCC--------cE---EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC
Q 013475 207 SCGYDCSSRLVDVEKG--------IE---TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL 274 (442)
Q Consensus 207 s~~~d~~v~vwd~~~~--------~~---~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (442)
+++.|+.|+|||+.++ +. +..+. |...|.+++|+|++..+|++++.||.|++||++++..+.....|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 7788999999998765 22 23333 688999999999866899999999999999999987776777788
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec------cccceeeeEEecCCCCeeEEEe-CC--
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY------VEAYTCPCVRHHPFDPYFVAQS-NG-- 345 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~-~~-- 345 (442)
..|.+++|+|+|++|++++. |+.|++||++ +.....+.. .+...+.++.|++++.++++.+ .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~-------dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQ-------NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp GCEEEEEECTTSSCEEEEET-------TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred CceeEEEEcCCCCEEEEEcC-------CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 89999999999999999998 9999999998 333322221 1234789999999888776633 33
Q ss_pred ----CeEEEeeCCCC
Q 013475 346 ----NYIAIFSSTPP 356 (442)
Q Consensus 346 ----~~i~i~~~~~~ 356 (442)
..+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 24899998764
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=202.97 Aligned_cols=284 Identities=12% Similarity=0.080 Sum_probs=190.0
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCC---ceeEEEeCCCCCEEEEEec---------CCcEEEE
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSA---AVNDVKWSQQGLFVLSCGY---------DCSSRLV 217 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~---------d~~v~vw 217 (442)
+++|+|+ +++++++ .|+.|++||+.++ +....+..|.. .+.+++|+|||++|++++. ++.|++|
T Consensus 20 ~~~~s~d-g~~~~~~-~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISG-QEYLHQS-ADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSS-SEEEEEC-TTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCC-CeEEEEc-CCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 7899999 7766655 5999999999655 45555554443 4899999999999999876 7899999
Q ss_pred ECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCCE-----------------eE
Q 013475 218 DVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGPI-----------------LD 279 (442)
Q Consensus 218 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i-----------------~~ 279 (442)
|+.+++.+........+..++|+||| +.|+.+. ++.|++||+.+++..... .++...| .+
T Consensus 96 d~~~g~~~~~~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 96 DLSNGEFVRGNELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp ETTTTEECCSSCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred ECCCCccccceecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 99998773222224568899999997 5666654 789999999887765432 2222222 48
Q ss_pred EEEeeCCCEEEeccCCCC---------------------------CcCCCCeEEEEeCCCCccc--cee-----eccccc
Q 013475 280 VEFTINGKQFVSSSDVSG---------------------------SNMSENSIVVWDVSREVPL--SKQ-----VYVEAY 325 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~---------------------------~~~~d~~i~iwd~~~~~~~--~~~-----~~~~~~ 325 (442)
+.|+|||++|++++.... .......|.+||+.++... ..+ ...+..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 999999999998874100 0001228899999887642 111 113556
Q ss_pred eeeeEEecCCCCeeEEEeCC----CeEEEee----CCCCcccccceeEeecccccCcE-----EEEEccCCCEEEE--ec
Q 013475 326 TCPCVRHHPFDPYFVAQSNG----NYIAIFS----STPPFRLDKFKRYESHGVSGFPI-----KCSFSLDGEKLVS--GS 390 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~----~~i~i~~----~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~~--g~ 390 (442)
.+..+.|+|+++++++.... ..|.+|| ..++.....+... ...+...+. .+.|+|||+.|+. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI-EESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE-EECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc-cccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 78899999998766664322 3588888 6655443222100 012233444 7899999996654 44
Q ss_pred CCC--cEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeC----CCcEEEcC
Q 013475 391 SDG--SIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW----NGDVSVYE 442 (442)
Q Consensus 391 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd 442 (442)
.+| .|++||+.+++ ...+..+...+..+.++ ++..+++++.. ++.+++|.
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 555 57777877766 45565566678888777 77445555544 47788873
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.1e-20 Score=176.19 Aligned_cols=168 Identities=16% Similarity=0.159 Sum_probs=132.3
Q ss_pred ccccceEEEEeeCCCCCEEE----EecCCCcEEEEEcccC-----Cc----ceeeeeccCCCceeEEEeCCC-CCEEEEE
Q 013475 143 HHTKAVNSINWSPTHAHLLA----SAGMDQSICIWNVWSR-----DQ----KLARVLNFHSAAVNDVKWSQQ-GLFVLSC 208 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~----s~~~dg~i~iwd~~~~-----~~----~~~~~~~~h~~~v~~l~~~~~-~~~l~s~ 208 (442)
.|.+.|++++|+|+ +++|+ +|+.|+.|+|||+.+. .. .....+.+|...|.+++|+|+ +++|+++
T Consensus 90 ~~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 36788999999999 88888 8999999999998643 11 124566789999999999997 8899999
Q ss_pred ecCCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-------CCEeEE
Q 013475 209 GYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-------GPILDV 280 (442)
Q Consensus 209 ~~d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~~ 280 (442)
+.||+|++||++++....... |...|.+++|+|+| ++|++|+.||.|++||++ ++....+..+. ..|.++
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 999999999999986655444 78899999999996 899999999999999998 55555554432 379999
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE 313 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~ 313 (442)
.|++++.++++.+...+.-.....+++|++++.
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999998887654431000011234999999865
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=195.28 Aligned_cols=290 Identities=10% Similarity=-0.011 Sum_probs=191.1
Q ss_pred Ccceeccccccc---ceEEEEeeCCCCCEEEEecC---------CCcEEEEEcccCCccee--eeeccCCCceeEEEeCC
Q 013475 135 GRLSTALCHHTK---AVNSINWSPTHAHLLASAGM---------DQSICIWNVWSRDQKLA--RVLNFHSAAVNDVKWSQ 200 (442)
Q Consensus 135 ~~~~~~l~~h~~---~V~~~~~s~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~--~~~~~h~~~v~~l~~~~ 200 (442)
++....+.+|.. .|.+++|||| |++|++++. ++.|++||+.++ +.. ..+ ...+..++|+|
T Consensus 46 g~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l---~~~~~~~~~SP 119 (719)
T 1z68_A 46 GQSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNEL---PRPIQYLCWSP 119 (719)
T ss_dssp CCEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC---CSSBCCEEECS
T ss_pred CcEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEECCCC--ccccceec---CcccccceECC
Confidence 344444555544 4999999999 899988876 789999999655 321 122 25688999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEEEeee--CCcce-----------------EEEEEccCCCCEEEEeeCCC-------
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAV-----------------RVVKFHPENSNLFLSGGSKG------- 254 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v-----------------~~~~~~~~~~~~l~~~~~dg------- 254 (442)
||+.|+++. ++.|++||+.+++...... +...+ .+++|+||| +.|++++.|.
T Consensus 120 DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 120 VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEE
T ss_pred CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEE
Confidence 999999986 8899999999887765432 22212 489999997 6777766442
Q ss_pred ---------------------------cEEEEECCCCceE---E-----EeccCCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 255 ---------------------------LLRLWDIRTGKVA---H-----EYIQSLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 255 ---------------------------~i~iwd~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
.|++||+.+++.. . .+..|...+..++|+||++++++.... .
T Consensus 198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~---~ 274 (719)
T 1z68_A 198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR---V 274 (719)
T ss_dssp EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES---S
T ss_pred eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc---c
Confidence 7889999887642 1 123577789999999998777664320 0
Q ss_pred CCCCeEEEEe----CCCCcccceee---ccccceee-----eEEecCCCCeeEE--EeCCC--eEEEeeCCCCcccccce
Q 013475 300 MSENSIVVWD----VSREVPLSKQV---YVEAYTCP-----CVRHHPFDPYFVA--QSNGN--YIAIFSSTPPFRLDKFK 363 (442)
Q Consensus 300 ~~d~~i~iwd----~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~l~~--~~~~~--~i~i~~~~~~~~~~~~~ 363 (442)
.....|.+|| +.+++...... ..+...+. .+.|+|+|+.++. ...++ .|.+|++.+... .
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~----~ 350 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA----I 350 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC----E
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce----E
Confidence 0124588899 77665443332 23344444 7899999997655 33444 677778766531 2
Q ss_pred eEeecccccCcEEEEEccCCCEEEEecCC-----CcEEEEecCC--ce-eeEeee----ccCCceeEEEEcCCCCCEEEE
Q 013475 364 RYESHGVSGFPIKCSFSLDGEKLVSGSSD-----GSIYFYNCRS--SE-LERKIK----AYEQACIDVAFHPILPNIIGS 431 (442)
Q Consensus 364 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~--~~-~~~~~~----~~~~~v~~~~~~p~~~~~l~s 431 (442)
.+.. ....+..+.++ +++.|+..+.+ +.+++|.+.. +. ....+. +|...+..+.|++++..++++
T Consensus 351 ~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 351 QITS--GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp ECSC--SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred eccc--CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 2221 12335566777 88777766554 7888888753 32 123333 255678899999998555555
Q ss_pred eeCC--CcEEEcC
Q 013475 432 CSWN--GDVSVYE 442 (442)
Q Consensus 432 ~~~d--g~i~iwd 442 (442)
++.+ ..+.+||
T Consensus 428 ~s~~~~p~~~l~d 440 (719)
T 1z68_A 428 CYGPGIPISTLHD 440 (719)
T ss_dssp ECCBSSCEEEEEC
T ss_pred cCCCCCCeEEEEE
Confidence 5544 3455664
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.1e-21 Score=191.09 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=173.0
Q ss_pred CCCceeEEEeCCCCCEEEEEec-CCcEEEEECCCCcEEEeeeCC-cceEEEEEccCCCCEEEEeeC---CCcEEEEECCC
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEKGIETQSFREE-LAVRVVKFHPENSNLFLSGGS---KGLLRLWDIRT 263 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 263 (442)
+..+|++++|+|||++|++++. ||+++||++++++..+...+. ..+..+.|+|+ .++++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 3567999999999999999887 999999999777766555555 58999999997 67776664 45556655433
Q ss_pred ---CceEEEeccCCCCEeEEEEeeCCCE--EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCe
Q 013475 264 ---GKVAHEYIQSLGPILDVEFTINGKQ--FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 264 ---~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (442)
+... .+... ..+...+|+++|+. ++++. ++.+.+||+.+++...... ... .++.|+|+|++
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~--------~~~~~l~d~~~g~~~~l~~-~~~---~~~~~spDG~~ 163 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGAT--------EDRVALYALDGGGLRELAR-LPG---FGFVSDIRGDL 163 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEEC--------SSCEEEEEEETTEEEEEEE-ESS---CEEEEEEETTE
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecC--------CCCceEEEccCCcEEEeec-CCC---ceEEECCCCCE
Confidence 2222 44333 23456788998864 34444 5556699998875433222 221 78999999999
Q ss_pred eEEEeCC----CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC--cEEEEecCCceeeEeeecc
Q 013475 339 FVAQSNG----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG--SIYFYNCRSSELERKIKAY 412 (442)
Q Consensus 339 l~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~ 412 (442)
++.++.+ ..|++||+.++.. ..+. .+...+..++|||||++|+++..++ .|++||+.+++.. .+..|
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g~~----~~l~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSGGL----RVFD--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCC----EEEC--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred EEEEEEcCCCCeEEEEEcCCCCCc----eEee--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence 9987766 7899999887643 2232 2335578999999999999888888 8999999998877 77778
Q ss_pred CCceeEEE--------EcCCCCCEEEEeeCCCcEEEcC
Q 013475 413 EQACIDVA--------FHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 413 ~~~v~~~~--------~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+..++ |+||| .++++++.||.++||+
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred CcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 77777777 99999 8999999999999995
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=7.4e-21 Score=175.93 Aligned_cols=291 Identities=13% Similarity=0.021 Sum_probs=187.4
Q ss_pred CCcceecccccccc-----eEEEEeeCCCCCEEEEecC-C--CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEE
Q 013475 134 PGRLSTALCHHTKA-----VNSINWSPTHAHLLASAGM-D--QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFV 205 (442)
Q Consensus 134 ~~~~~~~l~~h~~~-----V~~~~~s~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 205 (442)
.+..+..+..+... +.+++|+|| |++|+.... + ..|.+||+.++ +......++......+.|+||+++|
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~spdg~~l 95 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQ--QAVQLTEGKGDNTFGGFISTDERAF 95 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTT--EEEECCCSSCBCTTTCEECTTSSEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCC--cEEEeecCCCCccccceECCCCCEE
Confidence 34445555544433 788999999 777766543 2 36788887443 4333333333333448899999999
Q ss_pred EEEecCCcEEEEECCCCcEEEeee-CCcceEE-------------------EEEccCCCCEEEEe-----eCCCcEEEEE
Q 013475 206 LSCGYDCSSRLVDVEKGIETQSFR-EELAVRV-------------------VKFHPENSNLFLSG-----GSKGLLRLWD 260 (442)
Q Consensus 206 ~s~~~d~~v~vwd~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~iwd 260 (442)
+.++.++.|++||+.+++....+. +...... +.|+|++ ..++.. ..+..|++||
T Consensus 96 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEE
Confidence 999999999999999988766665 2222222 2456665 333332 4566899999
Q ss_pred CCCCceEEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-cceeeeEEecCCCCe
Q 013475 261 IRTGKVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-AYTCPCVRHHPFDPY 338 (442)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 338 (442)
+.+++..... .+...+..+.|+| +++.|+..+.. ........|.+||+..+... .+.... ...+..+.|+|++++
T Consensus 175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 175 IETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp TTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSC
T ss_pred CCCCcEEeec-cCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCE
Confidence 9887765443 4557789999999 78877766530 00000157899998765422 222221 345778899999998
Q ss_pred eEEEeCC-----CeEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEec----------------CCCcEE
Q 013475 339 FVAQSNG-----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGS----------------SDGSIY 396 (442)
Q Consensus 339 l~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~----------------~dg~i~ 396 (442)
|+..+.+ +.|++||+.++.... +.... . .. +.|+| +|++|++++ .++.|+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~--~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEE----VMVMP--P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEE----EEECC--S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred EEEEecCCCCccceEEEEECCCCCeEE----eeeCC--C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 8776543 459999987754321 11111 1 22 88999 999888754 347899
Q ss_pred EEecCCceeeEeeeccCC-----------ceeEEEEcCCCCCEEEEee-CCCcEEEc
Q 013475 397 FYNCRSSELERKIKAYEQ-----------ACIDVAFHPILPNIIGSCS-WNGDVSVY 441 (442)
Q Consensus 397 iwd~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~~l~s~~-~dg~i~iw 441 (442)
+||+.+++. ..+..+.. .+..++|+|++ +.|+.++ .++...||
T Consensus 324 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 324 VLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPND-DGVLFTSDFEGVPAIY 378 (396)
T ss_dssp EEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEECTTSSCEEE
T ss_pred EEecccCce-EEccCCCCccccccccccCCCCCceEccCC-CeEEEEecCCCCceEE
Confidence 999988765 34544444 25678999999 5555544 46666665
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=1.7e-19 Score=164.09 Aligned_cols=269 Identities=15% Similarity=0.169 Sum_probs=194.2
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeecc------CCCceeEEEe
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNF------HSAAVNDVKW 198 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~------h~~~v~~l~~ 198 (442)
++.+.++..+..+ .++|+|| +++|++++ .++.|.+||..+. +.+..+.. +......++|
T Consensus 41 ~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~ 115 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQ 115 (361)
T ss_dssp CCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEE
T ss_pred CeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEE
Confidence 4555666666665 8999999 88888875 3678999998543 55554442 2345778999
Q ss_pred CCCCCEEEEEec--CCcEEEEECCCCcEEEe-eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-CceEEE-----
Q 013475 199 SQQGLFVLSCGY--DCSSRLVDVEKGIETQS-FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKVAHE----- 269 (442)
Q Consensus 199 ~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~----- 269 (442)
+|||++|++++. ++.|.+||+.+++.+.. +..... ..+.+.|++...+++.+.||.+.+|++.. ++....
T Consensus 116 spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 116 TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 999999999875 58999999999988887 664332 33667887767888999999999999865 554411
Q ss_pred -eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc--eeecc------c---cceeeeEEecCCCC
Q 013475 270 -YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS--KQVYV------E---AYTCPCVRHHPFDP 337 (442)
Q Consensus 270 -~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~------~---~~~~~~~~~~~~~~ 337 (442)
+.....++ .+.+++++..++..+. ++.|.++|+....... ..... . ......++++++++
T Consensus 195 ~~~~~~~~~-~~~~~~~g~~~~~~~~-------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 195 MFSVKDDPI-FIAPALDKDKAHFVSY-------YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp CSCTTTSCB-CSCCEECSSEEEEEBT-------TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eEcCCCCce-EEEecccCCEEEEEeC-------CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 22222222 3445778877777776 8999999997543211 11000 0 01122378999988
Q ss_pred eeEEEeC-----------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc--e
Q 013475 338 YFVAQSN-----------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS--E 404 (442)
Q Consensus 338 ~l~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~--~ 404 (442)
.++++.. .+.|.+||..+...+ ..+..+ . +..++|+|||++|++++. +.|.+||..++ +
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v---~~i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV---ARIPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE---EEEECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEE---EEEecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 8777543 458999999887544 333332 2 789999999999999887 99999999999 9
Q ss_pred eeEeeeccCCceeEEEEcCCC
Q 013475 405 LERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~p~~ 425 (442)
.+.++..+......++++|+|
T Consensus 339 ~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEEEETTSCSSEEEEEECCCS
T ss_pred eeEEeccCCCCcEEEEecCCC
Confidence 998887777888999999998
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=5.8e-20 Score=167.95 Aligned_cols=248 Identities=13% Similarity=0.094 Sum_probs=168.8
Q ss_pred cccceEEEEeeCCCCCEEEEecCCCcEEEEEcc-cCCcceeeeecc-CCCceeEEEeCCCCCE--EEEEe----------
Q 013475 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVW-SRDQKLARVLNF-HSAAVNDVKWSQQGLF--VLSCG---------- 209 (442)
Q Consensus 144 h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-h~~~v~~l~~~~~~~~--l~s~~---------- 209 (442)
+...+..++|+|+ +++|++++.+ .|.+|++. ++ ++...... ..+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCC--CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 3456889999999 8889888887 99999996 43 33322221 1133667999999994 44543
Q ss_pred ---cCCcEEEEECC-CCcEEEeee-----CCcceEEEEEccCCCCEEEEee-CCCcEEEEECC-CCceE--EEec--cCC
Q 013475 210 ---YDCSSRLVDVE-KGIETQSFR-----EELAVRVVKFHPENSNLFLSGG-SKGLLRLWDIR-TGKVA--HEYI--QSL 274 (442)
Q Consensus 210 ---~d~~v~vwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~--~~~~--~~~ 274 (442)
.++.+.+|++. +++....+. +...+.+++|+|+| ++++++. .++.|++||+. +++.. ..+. .+.
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 465544333 45679999999997 5555554 46799999998 67643 3333 235
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCC--CCcccc---eeec-cc-----cc------eeeeEE-ecCCC
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS--REVPLS---KQVY-VE-----AY------TCPCVR-HHPFD 336 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~--~~~~~~---~~~~-~~-----~~------~~~~~~-~~~~~ 336 (442)
..+..++|+|+|++++++.. .++.|.+|++. +++... .... .. .. .+..++ |+|+|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME------AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred CCCCEeEECCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence 67899999999998877653 16899999875 343211 1111 11 11 477899 99999
Q ss_pred CeeEEEeCC-C-----eEEEeeCCCCcccccceeEeecccccCcEEEEEcc---CCCEEEEecCC-CcEEEEecCCc
Q 013475 337 PYFVAQSNG-N-----YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL---DGEKLVSGSSD-GSIYFYNCRSS 403 (442)
Q Consensus 337 ~~l~~~~~~-~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~g~~d-g~i~iwd~~~~ 403 (442)
++++++..+ + .|.+|++.....+..+.... ......+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~-~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee-ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 988876543 3 89999986322221111111 11223456789999 89999998864 89999998765
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=2.1e-19 Score=163.15 Aligned_cols=257 Identities=12% Similarity=0.049 Sum_probs=169.7
Q ss_pred Ccceecccccc-cceEEEEeeCCCCCE-EEEecCCCcEEEEEcccCCcceeeeecc-C-----CCceeEEEeCCCCCEEE
Q 013475 135 GRLSTALCHHT-KAVNSINWSPTHAHL-LASAGMDQSICIWNVWSRDQKLARVLNF-H-----SAAVNDVKWSQQGLFVL 206 (442)
Q Consensus 135 ~~~~~~l~~h~-~~V~~~~~s~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h-----~~~v~~l~~~~~~~~l~ 206 (442)
++.+..+..+. ..+..++|+|+ +++ ++++..++.|.+||+.++ +....+.. + ...+.+++|+|++++|+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 107 (349)
T 1jmx_B 31 DTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 107 (349)
T ss_dssp TEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred CcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCCCCEEE
Confidence 34445554332 25789999999 664 556667899999999554 44444442 2 23478999999999999
Q ss_pred EEecC------------CcEEEEECCCCc---EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec
Q 013475 207 SCGYD------------CSSRLVDVEKGI---ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 207 s~~~d------------~~v~vwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (442)
+++.+ +.|.+||+.+++ .+..+.+...+.+++|+|+| +++ +++. .|++||+.+++.+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~l~-~~~~--~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLY-VAGP--DIYKMDVKTGKYTVALP 183 (349)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEE-EESS--SEEEECTTTCCEEEEEC
T ss_pred EEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC-cEE-EccC--cEEEEeCCCCceecccc
Confidence 98865 899999999854 33445566678999999997 444 4443 49999999998877765
Q ss_pred cCCC------------------------CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccccee
Q 013475 272 QSLG------------------------PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTC 327 (442)
Q Consensus 272 ~~~~------------------------~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 327 (442)
.+.. ....+.+++++........ ....+..+|..+++............+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD------LLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE------EEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc------cceeEEEEeccCCcEEecccccCCCcc
Confidence 4320 2334556554422111110 011112233333322111111233467
Q ss_pred eeEEecC-CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceee
Q 013475 328 PCVRHHP-FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE 406 (442)
Q Consensus 328 ~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~ 406 (442)
..+.++| ++++++++ ++.|.+||+.+...... +. ....+..++|+++|++|++++.++.|++||+.+++.+
T Consensus 258 ~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~---~~---~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA---AN---LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE---EE---CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred eeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE---Ec---CCCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 7899999 99998888 88999999987654322 21 1234678999999999998888999999999999988
Q ss_pred Eeeecc
Q 013475 407 RKIKAY 412 (442)
Q Consensus 407 ~~~~~~ 412 (442)
..+...
T Consensus 330 ~~~~~~ 335 (349)
T 1jmx_B 330 KNIKLP 335 (349)
T ss_dssp EEEECS
T ss_pred eeeecC
Confidence 887654
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=4e-20 Score=184.74 Aligned_cols=279 Identities=12% Similarity=0.022 Sum_probs=184.1
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCc-----eeEEEeCCCCCEEEEEecC---------
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAA-----VNDVKWSQQGLFVLSCGYD--------- 211 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~s~~~d--------- 211 (442)
....+++|+|| +++|+++ ||.|++||+.++ .....+.+|... ...+.|||||++|+.++.+
T Consensus 17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSS-SEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCC-CcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 34668999999 8888886 899999999665 445556666533 2347899999999998876
Q ss_pred CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCCE-------------
Q 013475 212 CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGPI------------- 277 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i------------- 277 (442)
+.+.+||+.+++......+...+...+|+||| +.|+.+ .++.|++||+.+++..+.. .++...+
T Consensus 92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEETTTTEECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred eEEEEEECCCCcEEEcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 56779999999876655567889999999998 555555 4679999999887654322 2222222
Q ss_pred ----eEEEEeeCCCEEEeccCCCC-----------------------------CcCCCCeEEEEeCCC---Ccc--ccee
Q 013475 278 ----LDVEFTINGKQFVSSSDVSG-----------------------------SNMSENSIVVWDVSR---EVP--LSKQ 319 (442)
Q Consensus 278 ----~~~~~~~~~~~l~~~~~~~~-----------------------------~~~~d~~i~iwd~~~---~~~--~~~~ 319 (442)
..+.|||||++|+..+.... .......|.+||+.+ +.. ...+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 35899999999988742100 001122688999988 632 2222
Q ss_pred ec-----cccceeeeEEecCCCCeeEEEeC----CCeEEEeeCCCCc----ccccceeEeecccccCcE-----EEEEcc
Q 013475 320 VY-----VEAYTCPCVRHHPFDPYFVAQSN----GNYIAIFSSTPPF----RLDKFKRYESHGVSGFPI-----KCSFSL 381 (442)
Q Consensus 320 ~~-----~~~~~~~~~~~~~~~~~l~~~~~----~~~i~i~~~~~~~----~~~~~~~~~~~~~~~~v~-----~~~~s~ 381 (442)
.. .+...+..+.|+|+++.++.... +..|.+||..++. +... ..+....+...+. ...|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~-~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA-RQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG-GCEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE-EEeeeccCCceEccCcCCCceEcC
Confidence 21 25567889999999997665432 3479999988765 2211 2221122223333 679999
Q ss_pred CCCEEE-Eec-CC--CcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 382 DGEKLV-SGS-SD--GSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 382 ~g~~l~-~g~-~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
||+.|+ ..+ .+ ..|++||+.+++... +......|..+.+ +++..+++++..
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEec
Confidence 999877 554 33 358888988766543 4433555665542 334355555554
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.86 E-value=1.4e-19 Score=179.00 Aligned_cols=293 Identities=8% Similarity=-0.090 Sum_probs=195.8
Q ss_pred eecccccccceEEEEeeCCCCCEEEEe--cCCCcEEEEEcccCCcceeeeeccCCCcee---------EEEeC--CCCCE
Q 013475 138 STALCHHTKAVNSINWSPTHAHLLASA--GMDQSICIWNVWSRDQKLARVLNFHSAAVN---------DVKWS--QQGLF 204 (442)
Q Consensus 138 ~~~l~~h~~~V~~~~~s~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~ 204 (442)
...+.+|...|..++|+++ +.++++. +.++...||....+ .....+..|...+. ...|+ |||++
T Consensus 16 ~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HHHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred HHHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCe
Confidence 3457789999999999988 7677776 66889999997322 33444555666665 66665 99998
Q ss_pred -EEEEec-CCcEEEEECC--C-CcEEEeee-----CCcceEEEEEccCCCCEEEEeeCC----------CcEEEEECCC-
Q 013475 205 -VLSCGY-DCSSRLVDVE--K-GIETQSFR-----EELAVRVVKFHPENSNLFLSGGSK----------GLLRLWDIRT- 263 (442)
Q Consensus 205 -l~s~~~-d~~v~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~- 263 (442)
|+.++. +..|.+|++. . ++...... +...+..++|+||| +.|++++.+ ..|++||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 776654 5667777776 3 44333333 35678899999997 667766655 5799999987
Q ss_pred -----CceEEEec-cCCCCEeEEEEeeCCCEEEeccCCCCCcC-CCCeEEEEeCC-CCc--ccceeeccccceeeeEEec
Q 013475 264 -----GKVAHEYI-QSLGPILDVEFTINGKQFVSSSDVSGSNM-SENSIVVWDVS-REV--PLSKQVYVEAYTCPCVRHH 333 (442)
Q Consensus 264 -----~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~-~d~~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~ 333 (442)
++. ..+. .+...+..+.|+|||++|+.++....... ....|.+||+. ++. ....+...+...+..+.|+
T Consensus 172 ~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 172 AAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred ccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 544 4555 55577888999999999987764000000 02489999998 451 3333333445678899999
Q ss_pred CCCCeeEEEeCCC--eEEEeeCCCCcccccceeEeecccc------cCcEEEEEccCCCEEEEecCCCcEEEE--ecCCc
Q 013475 334 PFDPYFVAQSNGN--YIAIFSSTPPFRLDKFKRYESHGVS------GFPIKCSFSLDGEKLVSGSSDGSIYFY--NCRSS 403 (442)
Q Consensus 334 ~~~~~l~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~g~~l~~g~~dg~i~iw--d~~~~ 403 (442)
|+|++++++..++ .|.+|+..++....... .+... ..+..++|+++++++++++. +.++|| |+.++
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 9999777777777 67777765443221111 11100 01456889999999999998 999999 55555
Q ss_pred eeeEeeeccCCceeEE-EEcCCCCCEEEEeeCCCcEEEc
Q 013475 404 ELERKIKAYEQACIDV-AFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 404 ~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~~dg~i~iw 441 (442)
+ +..+..|...+..+ +++.+. .++++++.+....||
T Consensus 327 ~-~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 327 E-LVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVV 363 (662)
T ss_dssp E-EEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEE
T ss_pred c-EEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEE
Confidence 5 67777777778877 665543 344455555544444
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.85 E-value=6.3e-18 Score=148.96 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=178.1
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec------cCCCceeEEEe-CCCCCEEEEEec-CCc
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN------FHSAAVNDVKW-SQQGLFVLSCGY-DCS 213 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~l~~-~~~~~~l~s~~~-d~~ 213 (442)
.+|-....+++++++ ++++++...++.|.+||.. ......+. ++...+..+++ .++++++++... ++.
T Consensus 26 ~g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCccCCCceEEECCC-CCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 355678999999999 8888888889999999974 23344442 24467899999 467766666543 889
Q ss_pred EEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec--cCCCCEeEEEEeeCCCEE
Q 013475 214 SRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI--QSLGPILDVEFTINGKQF 289 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l 289 (442)
|.+|| .+++.+..+. ....+..++++++| +++++...++.|++||.. ++.+..+. .+...+..++++++|+++
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 99999 5677776665 34578999999987 788877778899999964 56555553 344578999999999988
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCCCeeEEEeCCC-eEEEeeCCCCcccccceeEee
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFDPYFVAQSNGN-YIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~i~i~~~~~~~~~~~~~~~~~ 367 (442)
++... ++.|.+||.... .+..+... .......+++++++.++++...++ .|.+|+.... .+ ..+..
T Consensus 179 v~~~~-------~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~---~~~~~ 246 (286)
T 1q7f_A 179 ISDNR-------AHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LI---SALES 246 (286)
T ss_dssp EEEGG-------GTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EE---EEEEE
T ss_pred EEECC-------CCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EE---EEEcc
Confidence 88776 899999998543 33332221 124578899999998888887776 9999996543 22 33333
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
+.....+..++++++|+++++ +.++.|++|++...
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 333344778999999987777 56899999998654
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=5.1e-18 Score=149.56 Aligned_cols=237 Identities=15% Similarity=0.230 Sum_probs=176.3
Q ss_pred cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeC-------CcceEEEEEc-cCCCCEEEEeeC-CCcEEE
Q 013475 188 FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE-------ELAVRVVKFH-PENSNLFLSGGS-KGLLRL 258 (442)
Q Consensus 188 ~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~-~~~~~~l~~~~~-dg~i~i 258 (442)
++-..+.+++++++++++++...++.|.+||.+ ++.+..+.. ...+..+++. +++ .++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEE
Confidence 455678999999999988888889999999987 556655542 2468899994 554 66666543 789999
Q ss_pred EECCCCceEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCC
Q 013475 259 WDIRTGKVAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFD 336 (442)
Q Consensus 259 wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 336 (442)
|| .+++.+..+.. +...+..++++++|+++++... ++.|.+||... +.+..... ........+++++++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-------TTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSS
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECC-------CCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCC
Confidence 99 56777666643 3457899999999998888776 89999999653 33333321 223457889999999
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC-cEEEEecCCceeeEeeeccCC-
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG-SIYFYNCRSSELERKIKAYEQ- 414 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~- 414 (442)
..+++...++.|++|+..... + ..+........+..++++++|+++++...++ .|.+||. +++.+..+..+..
T Consensus 176 ~l~v~~~~~~~i~~~~~~g~~-~---~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYEGQY-L---RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH 250 (286)
T ss_dssp EEEEEEGGGTEEEEEETTCCE-E---EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC
T ss_pred CEEEEECCCCEEEEEcCCCCE-E---EEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCC
Confidence 988888889999999986532 1 2222222224678999999999988888776 9999995 5667777765533
Q ss_pred -ceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 415 -ACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 415 -~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+.++++++++ +++++ +.|+.|++|+
T Consensus 251 ~~~~~i~~~~~g-~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 251 AQCFDVALMDDG-SVVLA-SKDYRLYIYR 277 (286)
T ss_dssp SCEEEEEEETTT-EEEEE-ETTTEEEEEE
T ss_pred CcceeEEECCCC-cEEEE-CCCCeEEEEE
Confidence 47899999998 67777 5799999995
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=2.6e-18 Score=154.47 Aligned_cols=240 Identities=13% Similarity=0.045 Sum_probs=181.3
Q ss_pred CCceeEEEeCCCCCEEEEEecC------------------------CcEEEEECCCCcEEEeee--CCcceEEEEEccCC
Q 013475 190 SAAVNDVKWSQQGLFVLSCGYD------------------------CSSRLVDVEKGIETQSFR--EELAVRVVKFHPEN 243 (442)
Q Consensus 190 ~~~v~~l~~~~~~~~l~s~~~d------------------------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 243 (442)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. +...+..++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999999988887766 479999999998877765 34578999999997
Q ss_pred CCEEEEeeCCCcEEEEECCCCc-eEEEe---------ccCCCCEeEEEEee-CCCEEEecc-CCCCCcCCCCeEEEEeCC
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGK-VAHEY---------IQSLGPILDVEFTI-NGKQFVSSS-DVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~~~~~~~~d~~i~iwd~~ 311 (442)
+++++...++.|++||..... .+..+ ..+......+++++ ++.++++.+ . ++.|++||.
T Consensus 103 -~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-------~~~I~~~~~- 173 (329)
T 3fvz_A 103 -NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-------NSRIVQFSP- 173 (329)
T ss_dssp -CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-------CCEEEEECT-
T ss_pred -CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-------CCeEEEEcC-
Confidence 688888888999999985442 45555 23444688999999 888888885 5 899999994
Q ss_pred CCcccceeecc---------ccceeeeEEecCC-CCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc
Q 013475 312 REVPLSKQVYV---------EAYTCPCVRHHPF-DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 312 ~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
.+..+...... .......++++++ +.++++...++.|++|+..++... ..+........+..++|+|
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~---~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV---REIKHASFGRNVFAISYIP 250 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEECCTTTTTCEEEEEEET
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE---EEEeccccCCCcceeeecC
Confidence 44444333211 1123678999998 777777888999999999855433 2332233345577888888
Q ss_pred ------CCCEEEEecCCCcEEEEecCCceeeEeee---ccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 382 ------DGEKLVSGSSDGSIYFYNCRSSELERKIK---AYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 382 ------~g~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+|+.+++...+..|++||+.+++.+..+. .+...+.+|+++++| .++++...++.|++|+
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEE
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEe
Confidence 44433444456689999999999988873 566789999999999 8999999999999985
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=1.9e-18 Score=157.25 Aligned_cols=258 Identities=9% Similarity=0.042 Sum_probs=178.6
Q ss_pred CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec----------CCcEEEEECCCCcEEEeeeC-----
Q 013475 166 MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY----------DCSSRLVDVEKGIETQSFRE----- 230 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~----- 230 (442)
.|+.|.+||..++ +.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+++.+..+..
T Consensus 29 ~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4789999998554 556667655555 8999999999999873 67899999999998887762
Q ss_pred --CcceEEEEEccCCCCEEEEee-C-CCcEEEEECCCCceEEE-eccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCe
Q 013475 231 --ELAVRVVKFHPENSNLFLSGG-S-KGLLRLWDIRTGKVAHE-YIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 231 --~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~ 304 (442)
......++|+|+| ++|+++. . ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+. ||.
T Consensus 105 ~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~-------dg~ 174 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICG-------DGG 174 (361)
T ss_dssp CBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEET-------TSS
T ss_pred ccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECC-------CCc
Confidence 2456789999997 6666654 3 67899999999988877 5432 22335566765 56666666 899
Q ss_pred EEEEeCCC-Ccccceee----ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc--------cc
Q 013475 305 IVVWDVSR-EVPLSKQV----YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG--------VS 371 (442)
Q Consensus 305 i~iwd~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--------~~ 371 (442)
+.+|++.. ++...... .........+.+.+++..++..+.++.+.++|+...... ....+.... ..
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p 253 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK-VDGPWSLLNDEDKAKNWVP 253 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-EEEEEESCCHHHHHTTCEE
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce-ecccccccCcccccccccc
Confidence 99998865 33221110 000111122334566777777778899999998654311 011111000 00
Q ss_pred cCcEEEEEccCCCEEEEecC-----------CCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 372 GFPIKCSFSLDGEKLVSGSS-----------DGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.....++|+++++.+++... .+.|.+||+.+++.+.++..+. +.+++|+|++ ++|++++. +.|.|
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNV 329 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEE
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEE
Confidence 11123789999888877543 3479999999999999998876 9999999999 68887776 99999
Q ss_pred cC
Q 013475 441 YE 442 (442)
Q Consensus 441 wd 442 (442)
||
T Consensus 330 ~D 331 (361)
T 2oiz_A 330 YD 331 (361)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=4e-18 Score=153.77 Aligned_cols=278 Identities=11% Similarity=0.061 Sum_probs=191.2
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
..|.++.|+++ +..++..+.++.++.|. . .....+..+...+.+++|++++++++++..++.|.+||.++++..
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCC-ccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 45778889998 66677777788999993 2 345556667778899999999998888888999999999988776
Q ss_pred Eee-eCCcceEEEEEccCCCCEEEEeeCC----CcEEEEECCCCceEEEec--cCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 226 QSF-REELAVRVVKFHPENSNLFLSGGSK----GLLRLWDIRTGKVAHEYI--QSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 226 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
... .+...+.+++++++| +++++...+ +.|.+||..+++....+. .....+.++.++++|+++++..... .
T Consensus 80 ~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-~ 157 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-S 157 (333)
T ss_dssp EEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-T
T ss_pred EEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc-c
Confidence 555 356789999999996 677776665 689999998776543332 2345789999999998887765200 0
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCC-cccccce--eEeecccccCc
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPP-FRLDKFK--RYESHGVSGFP 374 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~-~~~~~~~--~~~~~~~~~~v 374 (442)
....+.|..||..+++.. ... ........++++++++.+++ ...++.|.+|+.... .....+. ..........+
T Consensus 158 ~~~~~~l~~~~~~~~~~~-~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVT-PII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP 235 (333)
T ss_dssp TBCCEEEEEECTTSCCEE-EEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred cCCCceEEEEeCCCCEEE-Eee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCC
Confidence 000245666666543322 111 12234678999999986654 456789999998642 2221111 01111111346
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC------ceeEEEEcCCCCCEEEEeeCC
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ------ACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~s~~~d 435 (442)
..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|++++ ..|+.++.+
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg-~~L~v~~~~ 300 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT-NQLIICSND 300 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS-CEEEEEEEC
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCC-CEEEEEeCc
Confidence 78999999998888877889999998 4666666654433 68999999997 455444444
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=9.3e-18 Score=152.23 Aligned_cols=261 Identities=10% Similarity=0.021 Sum_probs=170.3
Q ss_pred cceEEEEeeCCCCCEEEEec---------CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---C-
Q 013475 146 KAVNSINWSPTHAHLLASAG---------MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD---C- 212 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---~- 212 (442)
..+..+++ | |+.++... .++.|.+||+.++. .. .+ ..+..++|+|||++|+.++.+ +
T Consensus 15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNA--RR-FI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCC--EE-EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCc--eE-Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45677777 6 66666542 25689999986543 22 22 568899999999999988754 2
Q ss_pred -cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC---------------------------CCcEEEEECCCC
Q 013475 213 -SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS---------------------------KGLLRLWDIRTG 264 (442)
Q Consensus 213 -~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------------dg~i~iwd~~~~ 264 (442)
.|.+||+.+++......... +..+.|+|+| +.|+.++. ...|++||+.++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred ceEEEEECCCCceEEEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 48888998887776666555 9999999997 55555442 257999999888
Q ss_pred ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC-eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe
Q 013475 265 KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN-SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS 343 (442)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (442)
+.+..+.. . .+..+.|+|+| +++++..... ..... ...||.+.+++ ...+... ..+.. ++|+|++++..+
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~-~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~--~spdg~~l~~~~ 233 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI-IPQYFKFWDIYIWEDGK-EEKMFEK--VSFYA--VDSDGERILLYG 233 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS-SCCSSCCEEEEEEETTE-EEEEEEE--ESEEE--EEECSSCEEEEE
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEecccc-cccccccccEEEeCCCc-eEEeccC--cceee--ECCCCCEEEEEE
Confidence 76455544 3 78899999999 7766643000 00002 33444443333 2222222 33333 389999988766
Q ss_pred CC--------CeEEEeeCCCCcccccceeEeecccccCcEE-EEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC
Q 013475 344 NG--------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIK-CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ 414 (442)
Q Consensus 344 ~~--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 414 (442)
.+ ..|.+|+ ++... .+. ..+...+.. +.|+ +| ++++++.++.++|| +.+++.. .+..+..
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~~~----~l~-~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~ 302 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKEVM----GIL-DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRH 302 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSCEE----ESS-TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSS
T ss_pred ccccCCccccceEEEEC--CCceE----ecc-ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCC
Confidence 43 4688888 22211 111 122234555 8899 88 88999999999999 8766553 4444578
Q ss_pred ceeEEEEcCCCCCEEEEeeCCCcE-EEc
Q 013475 415 ACIDVAFHPILPNIIGSCSWNGDV-SVY 441 (442)
Q Consensus 415 ~v~~~~~~p~~~~~l~s~~~dg~i-~iw 441 (442)
.|.+++|++ . ++++++.++.. .||
T Consensus 303 ~v~~~~~s~-~--~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 303 WIMGFDVDE-I--VVYLKETATRLRELF 327 (347)
T ss_dssp EEEEEEESS-S--EEEEEECSSSCCEEE
T ss_pred eEEeeeeeC-c--EEEEEcCCCChHHhe
Confidence 899999999 4 77777666654 555
No 174
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=7.6e-16 Score=136.35 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=193.5
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
+..+...+.+++++++ |+++++...++.|.+||.. +. ........+...+.++++.+++.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 3455678999999999 8877777668899999975 31 1122223345789999999999888877668889999986
Q ss_pred CCcEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE-eccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 221 KGIETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE-YIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 221 ~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
++. ..+. ....+..+++.++| .++++...++.|..||. +++.... .......+..+++.++|+.+++...
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-- 160 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-- 160 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--
Confidence 332 2232 45578999999986 77777777889999998 5554322 2334457899999999988887765
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
++.|..||. +++............+..+++++++..+++...++.|.+|+. ++.. ..+........+..
T Consensus 161 -----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~----~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 161 -----NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI----TEFKIPTPNARPHA 229 (299)
T ss_dssp -----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCEEE
T ss_pred -----CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE----EEEECCCCCCCcee
Confidence 789999998 544332212223345778999999987777777889999998 3321 12222223356789
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCCceeeE-eeeccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELER-KIKAYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
++++++|+++++...++.|.+||. +++... .+..+...+.++++ +++ .++++...++.++
T Consensus 230 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g-~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGE-TIWFAMECDKIGK 290 (299)
T ss_dssp EEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSS-CEEEEETTTEEEE
T ss_pred EEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCC-CEEEEecCCcEEE
Confidence 999999997777767889999998 454322 12344567899999 887 5666655444433
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=5e-19 Score=176.88 Aligned_cols=237 Identities=8% Similarity=0.033 Sum_probs=164.2
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-CCc-----ceEEEEEccCCCCEEEEeeCC---------Cc
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EEL-----AVRVVKFHPENSNLFLSGGSK---------GL 255 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~~l~~~~~d---------g~ 255 (442)
....++.|++|+++|+++ |++|++||+.++++...+. +.. ....+.|+||| ++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceE
Confidence 346689999999988886 9999999999999877766 221 22448899997 677776665 56
Q ss_pred EEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc-----------
Q 013475 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA----------- 324 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------- 324 (442)
+.+||+.+++.. .+..+...+...+|||||+.|+.+. ++.|++||+.++...........
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~--------~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW--------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE--------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE--------CCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 789999988754 4666778899999999999999986 79999999987764322211111
Q ss_pred ------ceeeeEEecCCCCeeEEEeCCC------------------------------------eEEEeeCCC---Cccc
Q 013475 325 ------YTCPCVRHHPFDPYFVAQSNGN------------------------------------YIAIFSSTP---PFRL 359 (442)
Q Consensus 325 ------~~~~~~~~~~~~~~l~~~~~~~------------------------------------~i~i~~~~~---~~~~ 359 (442)
.....+.|+|||++|+..+.|. .|++||+.+ +...
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence 1223588999999998864221 477788876 5211
Q ss_pred ccceeEeec----ccccCcEEEEEccCCCEEEEec----CCCcEEEEecCCce----ee--Eee--eccCCcee-----E
Q 013475 360 DKFKRYESH----GVSGFPIKCSFSLDGEKLVSGS----SDGSIYFYNCRSSE----LE--RKI--KAYEQACI-----D 418 (442)
Q Consensus 360 ~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~g~----~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~ 418 (442)
.. ..+... .+...+..++|+|||++++... .+..|++||+.+++ +. ..+ ..|...|. .
T Consensus 245 ~~-~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 245 TS-IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CE-EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred eE-EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 11 111110 1445688999999999766543 33479999999887 22 222 44555554 7
Q ss_pred EEEcCCCCCEEE-Eee-CCCc--EEEc
Q 013475 419 VAFHPILPNIIG-SCS-WNGD--VSVY 441 (442)
Q Consensus 419 ~~~~p~~~~~l~-s~~-~dg~--i~iw 441 (442)
+.|+||| +.|+ ..+ .+|. |++|
T Consensus 324 p~fspDG-~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 324 PHFTLDG-NSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp CEECTTS-SEEEEEEECTTSCEEEEEE
T ss_pred ceEcCCC-CEEEEEEEcCCCceEEEEE
Confidence 8999999 5554 554 4554 4444
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.6e-17 Score=149.28 Aligned_cols=245 Identities=9% Similarity=0.073 Sum_probs=178.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCC------------------------CcEEEEEcccCCcceeeeec-cCCCceeEEEeC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMD------------------------QSICIWNVWSRDQKLARVLN-FHSAAVNDVKWS 199 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~ 199 (442)
-+.+.+|+++++ |+++++...+ +.|.+||..++ +....+. ++......++++
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEEC
Confidence 467999999999 8888888777 47999998544 4444443 455678999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCCc-EEEeee----------CCcceEEEEEccCCCCEEEEee-CCCcEEEEECCCCceE
Q 013475 200 QQGLFVLSCGYDCSSRLVDVEKGI-ETQSFR----------EELAVRVVKFHPENSNLFLSGG-SKGLLRLWDIRTGKVA 267 (442)
Q Consensus 200 ~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 267 (442)
++++++++...++.|++||.+... .+..+. +......++++|++..++++.+ .++.|++|| .+++.+
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 999988888888999999986542 444442 2336899999994347888876 689999999 567777
Q ss_pred EEeccC----------CCCEeEEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecC-
Q 013475 268 HEYIQS----------LGPILDVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHP- 334 (442)
Q Consensus 268 ~~~~~~----------~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~- 334 (442)
..+... ......++++++ +.++++... ++.|++||..+++.+..+.. .....+..++++|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-------~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg 251 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-------NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG 251 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-------TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-------CCEEEEEECCCCcEEEEEeccccCCCcceeeecCC
Confidence 666422 234789999998 777777776 89999999987766655432 2334566788888
Q ss_pred -----CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 335 -----FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 335 -----~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
++..+++...+..|++|+..++..+..+.. ...+...+..++++++|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~--~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP--VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333333344556899999887755432211 122335578999999998888888999999999753
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=2.6e-16 Score=150.30 Aligned_cols=287 Identities=12% Similarity=0.128 Sum_probs=199.4
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeC----CCCCEEEEEec-CCcEEEEECC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWS----QQGLFVLSCGY-DCSSRLVDVE 220 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~l~s~~~-d~~v~vwd~~ 220 (442)
..+..+.|+|| |++|++++.|+.|.+||+...+.+.+..+.. ......++|+ |||+++++++. +++|.|+|..
T Consensus 197 ~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 197 YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 35678999999 8999999999999999985224456666663 3456899999 69999888876 5999999999
Q ss_pred CCcEEEeeeCC------------cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-ccCCCCEeEEEEeeCCC
Q 013475 221 KGIETQSFREE------------LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQSLGPILDVEFTINGK 287 (442)
Q Consensus 221 ~~~~~~~~~~~------------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 287 (442)
+.+.+..+... ..+..+.+++++..+++....+|.|.++|....+.+... ........++.|+++|+
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 99988877621 257788899987677777777899999998765432211 12334677899999999
Q ss_pred EEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cc-cceeeeEE-ecCCCCeeE-EEe-CCCeEEEeeCCCCcc----
Q 013475 288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VE-AYTCPCVR-HHPFDPYFV-AQS-NGNYIAIFSSTPPFR---- 358 (442)
Q Consensus 288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~l~-~~~-~~~~i~i~~~~~~~~---- 358 (442)
+|+++.. .++.|.++|+.+++.+..+.. .. ...-.... ++|++..+. +.. .++.|.+++......
T Consensus 355 ~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 355 YFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp EEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred EEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 9877653 278999999999876655543 11 11111222 578755444 443 458999999886321
Q ss_pred cccceeEeecccccCcEEEEEccCCCEEEEecC-------CCcEEEEecCCc-----ee-eEeee--------ccCCcee
Q 013475 359 LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS-------DGSIYFYNCRSS-----EL-ERKIK--------AYEQACI 417 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-------dg~i~iwd~~~~-----~~-~~~~~--------~~~~~v~ 417 (442)
...++.+.... .....+.++|++++|.+... .+.|.|+|+.+. .. +..+. .-...+.
T Consensus 429 ~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 429 WKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp TSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred CEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence 22223333322 22245778999999998663 358999999876 21 12332 1245789
Q ss_pred EEEEcCCCCCEEEEee----CCCcEEEcC
Q 013475 418 DVAFHPILPNIIGSCS----WNGDVSVYE 442 (442)
Q Consensus 418 ~~~~~p~~~~~l~s~~----~dg~i~iwd 442 (442)
.+.|+++|..++++.. .++.|.|+|
T Consensus 507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 507 QGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 9999999965555543 368888875
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.79 E-value=4.3e-16 Score=148.81 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=193.2
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC--CCcEEEeeeCCcceE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE--KGIETQSFREELAVR 235 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~v~ 235 (442)
+.++++...+++|.++|..+. +.+..+. ....+..+.|+||++++++++.|+.|.+||+. +++.+..+.......
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~--~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY--EIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC--CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred ceEEEEeCCCCeEEEEECCCC--eEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 567777788999999998544 6666666 34567799999999999999999999999996 888888888777788
Q ss_pred EEEEc----cCCCCEEEEeeCCCcEEEEECCCCceEEEeccC-----------CCCEeEEEEeeCCCEEEeccCCCCCcC
Q 013475 236 VVKFH----PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS-----------LGPILDVEFTINGKQFVSSSDVSGSNM 300 (442)
Q Consensus 236 ~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~~~~~~~ 300 (442)
.++|+ |+|..++++...++.|.++|..+.+.+..+... ...+..+..++++..++....
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~------ 317 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK------ 317 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET------
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec------
Confidence 99999 698555566666799999999999888776421 125778888887665544433
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
.+|.|.++|......+.............+.|+|++++++++. .++.|.++|..+......+..-....+.+.-.. -+
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EE
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eE
Confidence 2799999999875433332323333456788999999987755 678999999998754433221011112221112 25
Q ss_pred ccCCCE-EEEec-CCCcEEEEecCC-------ceeeEeeeccCCceeEEEEcCCCCCEEEEeeC-------CCcEEEcC
Q 013475 380 SLDGEK-LVSGS-SDGSIYFYNCRS-------SELERKIKAYEQACIDVAFHPILPNIIGSCSW-------NGDVSVYE 442 (442)
Q Consensus 380 s~~g~~-l~~g~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------dg~i~iwd 442 (442)
+|++.. ++++. .++.|.++|..+ .+.++++......-..+.++|++ .+|..... .++|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEE
Confidence 787544 44543 568999999987 66778887654444557899998 45555431 34777765
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=7e-18 Score=155.53 Aligned_cols=256 Identities=12% Similarity=-0.036 Sum_probs=166.9
Q ss_pred cceeeeeccCCCceeE-----EEeCCCCCEEEEEec-CC--cEEEEECCCCcEEEeeeC-CcceEEEEEccCCCCEEEEe
Q 013475 180 QKLARVLNFHSAAVND-----VKWSQQGLFVLSCGY-DC--SSRLVDVEKGIETQSFRE-ELAVRVVKFHPENSNLFLSG 250 (442)
Q Consensus 180 ~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 250 (442)
......+..|...... .+|+|||++|++++. ++ .|.+||+.+++....... ...+..+.|+|+| ..|+.+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~ 98 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYV 98 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEE
Confidence 3455556656655555 889999999999887 66 488899999887776663 3344467899997 778888
Q ss_pred eCCCcEEEEECCCCceEEEeccCCCCEeEEE--EeeCCCEEEeccCC---------------CCCcCCCCeEEEEeCCCC
Q 013475 251 GSKGLLRLWDIRTGKVAHEYIQSLGPILDVE--FTINGKQFVSSSDV---------------SGSNMSENSIVVWDVSRE 313 (442)
Q Consensus 251 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~~---------------~~~~~~d~~i~iwd~~~~ 313 (442)
+.++.|++||+.+++....+..+...+.... +++++++++..... ......+..|.+||+.++
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 8888999999999887666666655554444 47899988742100 000112578999999987
Q ss_pred cccceeeccccceeeeEEecC-CCCeeEEEeCC------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEE
Q 013475 314 VPLSKQVYVEAYTCPCVRHHP-FDPYFVAQSNG------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKL 386 (442)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 386 (442)
+.... ......+..+.|+| +++.++....+ ..|.+++..+.... .+..+.....+....|+|||+.|
T Consensus 179 ~~~~l--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 179 ESTVI--LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp CEEEE--EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTTSSCE
T ss_pred ceEEe--ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCCCCEE
Confidence 54322 23344678899999 99988876653 37888887654321 11111111236678999999987
Q ss_pred EEecC-C----CcEEEEecCCceee--EeeeccCC---ceeEEEEcCCCCCEEEEe--------eCCCcEEEcC
Q 013475 387 VSGSS-D----GSIYFYNCRSSELE--RKIKAYEQ---ACIDVAFHPILPNIIGSC--------SWNGDVSVYE 442 (442)
Q Consensus 387 ~~g~~-d----g~i~iwd~~~~~~~--~~~~~~~~---~v~~~~~~p~~~~~l~s~--------~~dg~i~iwd 442 (442)
+..+. + +.|++||+.+++.. ..+.++.. ....+.|+|+|..++++. ..+..|++||
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 65432 2 23999999988643 33332111 122347999995444332 4466888885
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=2.5e-16 Score=139.37 Aligned_cols=241 Identities=12% Similarity=0.022 Sum_probs=169.3
Q ss_pred CcceecccccccceEEEEeeCCCCC-EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAH-LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
+..+..+..+.....+++|+|+ ++ +++++..++.|.+|+..++ ...+..+...+.+++|+++++++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 3444556667778899999999 66 8888888999999998443 4455557788999999999998877766789
Q ss_pred EEEEECCCCcEEEeee-----CCcceEEEEEccCCCCEEEE----ee-------------CCCcEEEEECCCCceEEEec
Q 013475 214 SRLVDVEKGIETQSFR-----EELAVRVVKFHPENSNLFLS----GG-------------SKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 214 v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~ 271 (442)
|.+||..+++...... ....+..++++++| +++++ |. ..+.|..++.. ++ +..+.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI 168 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence 9999998887654433 12346789999997 77776 33 13456666654 44 34444
Q ss_pred cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC-CcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEE
Q 013475 272 QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAI 350 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 350 (442)
.+......++|+++++.+++.+. ++.|.+|++.. +......
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~-------~~~i~~~~~~~~g~~~~~~------------------------------- 210 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTG-------DNATHRYCLNARGETEYQG------------------------------- 210 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETT-------TTEEEEEEECSSSCEEEEE-------------------------------
T ss_pred cCCCCCccEEECCCCCEEEEeCC-------CCeEEEEEECCCCcCcCCC-------------------------------
Confidence 55567789999999998866666 78999999862 2210000
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEE-cCCCCCEE
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF-HPILPNII 429 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l 429 (442)
..+ ......+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +++++| .+++ ..|
T Consensus 211 ------------~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~-~~L 271 (296)
T 3e5z_A 211 ------------VHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEG-RTL 271 (296)
T ss_dssp ------------EEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTS-CEE
T ss_pred ------------eEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCC-CEE
Confidence 000 0011335578899999876666 7789999976 777777777766 889999 5777 567
Q ss_pred EEeeCCCcEEE
Q 013475 430 GSCSWNGDVSV 440 (442)
Q Consensus 430 ~s~~~dg~i~i 440 (442)
+.++.++..++
T Consensus 272 ~v~t~~~l~~~ 282 (296)
T 3e5z_A 272 YMTVSTEFWSI 282 (296)
T ss_dssp EEEETTEEEEE
T ss_pred EEEcCCeEEEE
Confidence 77776765543
No 181
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.9e-17 Score=163.74 Aligned_cols=251 Identities=10% Similarity=-0.032 Sum_probs=160.0
Q ss_pred eecccccccceE---------EEEee--CCCCCE-EEEec-CCCcEEEEEcccCC-cceeeeecc-----CCCceeEEEe
Q 013475 138 STALCHHTKAVN---------SINWS--PTHAHL-LASAG-MDQSICIWNVWSRD-QKLARVLNF-----HSAAVNDVKW 198 (442)
Q Consensus 138 ~~~l~~h~~~V~---------~~~~s--~~~~~~-l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~-----h~~~v~~l~~ 198 (442)
...+..|...+. ...|+ || |++ |+.++ .+..|.+|++.... .. ...+.. |...+.+++|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEE
Confidence 445555655555 56666 99 665 55444 35666666653001 22 233443 6678899999
Q ss_pred CCCCCEEEEEecC----------CcEEEEECCC------CcEEEee-eCCcceEEEEEccCCCCEEEEeeCC--------
Q 013475 199 SQQGLFVLSCGYD----------CSSRLVDVEK------GIETQSF-REELAVRVVKFHPENSNLFLSGGSK-------- 253 (442)
Q Consensus 199 ~~~~~~l~s~~~d----------~~v~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-------- 253 (442)
+|||+.|++++.+ ..|++||+.+ ++..... .+...+..++|+||| +.|+.++.+
T Consensus 138 spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 138 LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTC
T ss_pred CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCC
Confidence 9999999998877 5899999998 6665555 556678889999997 666655543
Q ss_pred CcEEEEECC-CC---ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC--eEEEEeCCCCcccceeeccccce-
Q 013475 254 GLLRLWDIR-TG---KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN--SIVVWDVSREVPLSKQVYVEAYT- 326 (442)
Q Consensus 254 g~i~iwd~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~- 326 (442)
..|++||+. ++ +.......+...+..+.|+|||++++++.. ++ .|.+||+.+++... +...+...
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~-------~~~~~l~~~~~~~~~~~~-l~~~~~~~~ 288 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR-------TGWWNLHRVDPATGAATQ-LCRREEEFA 288 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT-------TSSCEEEEECTTTCCEEE-SSCCSSBSS
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC-------CCCeEEEEEECCCCceee-ccccccccc
Confidence 379999998 56 443334445678999999999997777765 67 66677765554322 21111111
Q ss_pred -------eeeEEecCCCCeeEEEeCCCeEEEe--eCCCCcccccceeEeecccccCcEEEEEccCCCEE--EEecCCC--
Q 013475 327 -------CPCVRHHPFDPYFVAQSNGNYIAIF--SSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKL--VSGSSDG-- 393 (442)
Q Consensus 327 -------~~~~~~~~~~~~l~~~~~~~~i~i~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l--~~g~~dg-- 393 (442)
+..+.+++++.+++++.. +.+.+| +..++. . ..+..+ ...+..+ ++++++.+ ++++.+.
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~---~~l~~~--~~~~~~~-~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L---VDAAGP--WTEWAAT-LTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E---EECCSS--CCEEEEE-EEEETTEEEEEEEETTEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E---EEecCC--CCeEEEE-EecCCCEEEEEEcCCCCCC
Confidence 457888999999999888 888888 544332 2 222222 2334444 14445433 3444443
Q ss_pred cEEEEecCCceeeE
Q 013475 394 SIYFYNCRSSELER 407 (442)
Q Consensus 394 ~i~iwd~~~~~~~~ 407 (442)
.|++||+.+++...
T Consensus 361 ~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 361 EVVELDTVTGRART 374 (662)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCceEE
Confidence 46666776766543
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.79 E-value=1.5e-16 Score=142.83 Aligned_cols=257 Identities=7% Similarity=0.060 Sum_probs=183.7
Q ss_pred CCCcEEEEEcccCCcceeeeec------cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEE
Q 013475 166 MDQSICIWNVWSRDQKLARVLN------FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKF 239 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~ 239 (442)
.+++|.+||.+++ +....+. ........+.+. +++.+++...++.|.+||..+++.+..+........+++
T Consensus 15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEE
T ss_pred CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEE
Confidence 4889999998654 3333221 122446778774 344555555679999999999999998887788999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-----CCEeEEEEeeCCCEEEecc-CCCCCcCCCCeEEEEeCCCC
Q 013475 240 HPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-----GPILDVEFTINGKQFVSSS-DVSGSNMSENSIVVWDVSRE 313 (442)
Q Consensus 240 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~~~~~~~~d~~i~iwd~~~~ 313 (442)
++++ .++++...++.|.+||..+++....+.... .....+++ .+++.+++.. . ++.|.+||+.++
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~-------~~~v~viD~~t~ 162 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSY-------QNRILKIDTETD 162 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTT-------CCEEEEEETTTT
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCC-------CCEEEEEECCCC
Confidence 9986 666655578999999999998877765433 14566777 4555555543 4 789999999988
Q ss_pred cccceeeccccceeeeEEecCCCCeeEEEeCC----------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCC
Q 013475 314 VPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG----------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDG 383 (442)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 383 (442)
+....+.. ......+.+++++++++++..+ +.|.++|..+..... .+.. .....+..++|+|++
T Consensus 163 ~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~---~~~~-~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 163 KVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK---QFKF-KLGDWPSEVQLNGTR 236 (328)
T ss_dssp EEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE---EEEC-CTTCCCEEEEECTTS
T ss_pred eEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE---EEec-CCCCCceeEEEecCC
Confidence 76655543 2345678899999977776654 789999988764332 2211 112357899999999
Q ss_pred CEEEEecCCCcEEEEecCCceeeEe--eeccCCceeEEEEcCCCCCEEEEe----eCCCcEEEcC
Q 013475 384 EKLVSGSSDGSIYFYNCRSSELERK--IKAYEQACIDVAFHPILPNIIGSC----SWNGDVSVYE 442 (442)
Q Consensus 384 ~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~----~~dg~i~iwd 442 (442)
++|+++.. .|.+||..+++.... +........+++++|+++.++++. ..++.|.+||
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 99988765 899999988776421 222246788999999654777777 6789999986
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=7.3e-17 Score=160.50 Aligned_cols=248 Identities=10% Similarity=0.009 Sum_probs=169.0
Q ss_pred CCCceeEEEeCCCCCEEEEEecCC-----cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCc--------
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDC-----SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGL-------- 255 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------- 255 (442)
|...+..++|||||++|+.+..++ .|++||+.+++.+........+..++|+||| +.|+.+..++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-SEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-CEEEEEEECCccccccccc
Confidence 445688999999999999876643 8999999999877643333346789999997 66666666554
Q ss_pred --------EEEEECCCCce----EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC------Cc-cc
Q 013475 256 --------LRLWDIRTGKV----AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR------EV-PL 316 (442)
Q Consensus 256 --------i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~------~~-~~ 316 (442)
|++|++.+++. +.....+...+..+.|+|||++|+..+.... ..+..|.+||+.+ +. ..
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC--DPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS--SSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC--CCccEEEEEECcccccccCCccce
Confidence 99999988752 2222334556789999999999987763100 0146899999976 42 23
Q ss_pred ceeeccccceeeeEEecCCCCeeEEEeCC----CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC
Q 013475 317 SKQVYVEAYTCPCVRHHPFDPYFVAQSNG----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD 392 (442)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 392 (442)
..+... ..... ..|++++..|+..+.. ..|.+|++.+.... ....+..+.....+..++|++++.++++...+
T Consensus 280 ~~l~~~-~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLIDN-FEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEECS-SSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeCC-CCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 333222 22222 3578888887776553 36999998775321 12333333322346678898777888888888
Q ss_pred Cc--EEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee---CCCcEEEcC
Q 013475 393 GS--IYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS---WNGDVSVYE 442 (442)
Q Consensus 393 g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd 442 (442)
+. |++||+.+++.+..+..+.+.+..+.+++++..++++.+ ..+.|++||
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 84 666787678877888877888999999998844444443 346777775
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=6.7e-16 Score=138.56 Aligned_cols=261 Identities=9% Similarity=-0.049 Sum_probs=183.7
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
.....+.+.. ++++++...++.|.+||..+. +.+..+. .......++++++++.+++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEET--TEEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEEC--CEEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 3457777753 566666677899999999554 5656665 4567899999888854444437999999999999988
Q ss_pred EeeeCCc------ceEEEEEccCCCCEEEEee-CCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 226 QSFREEL------AVRVVKFHPENSNLFLSGG-SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 226 ~~~~~~~------~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
..+.... ....+++ . +..++++.. .++.|.+||+.+++.+..+... .....+.++++|++++++......
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence 8777444 6677888 3 335555544 4889999999999888777654 345788999999988777640000
Q ss_pred ---cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 299 ---NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 299 ---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
....+.|.+||..+.+....+..........++++|+++++.++.. .|.+||..+...... ..... ....+.
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~~~~~--~~~~p~ 270 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-PFLEF--RDTKYY 270 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-CSBCC--CSSCEE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-eeecC--CCCceE
Confidence 0001789999999887665554433346788999999998888765 899999877653211 11111 134578
Q ss_pred EEEEcc-CCCEEEEe----cCCCcEEEEecCCceeeEeeeccCCceeEEEE
Q 013475 376 KCSFSL-DGEKLVSG----SSDGSIYFYNCRSSELERKIKAYEQACIDVAF 421 (442)
Q Consensus 376 ~~~~s~-~g~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 421 (442)
.++++| +++++++. ..++.|.+||.. ++.+.++.. ...-..++|
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 899999 56666666 578999999988 888888864 334455555
No 185
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.76 E-value=1.9e-14 Score=127.34 Aligned_cols=275 Identities=9% Similarity=-0.020 Sum_probs=192.5
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
.....+.++++.++ ++++++...++.|.+||.. +... ...+..+...+.++++.++++++++...++.|.+||.. +
T Consensus 17 ~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34568899999999 8888777778999999975 2222 22233344678999999999877776667889999988 5
Q ss_pred cEEEeee---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEE-EeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 223 IETQSFR---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH-EYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 223 ~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
+.. .+. ....+..+++.++| .++++...++.|..||.. ++... .+......+..+.+.++|+.+++...
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---- 165 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ---- 165 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT----
T ss_pred CeE-EecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC----
Confidence 543 332 34678999999986 777777667899999987 55442 23334457899999999997777765
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEE
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCS 378 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 378 (442)
++.|..||. +++...............+.+.+++..+++....+.|.+|+..... ..+........+..++
T Consensus 166 ---~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-----~~~~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ---NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI-----SEYDIPTPNARPHAIT 236 (300)
T ss_dssp ---TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-----EEEECSSTTCCEEEEE
T ss_pred ---CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcE-----EEEECCCCCCCceEEE
Confidence 788999998 4433322111233457789999999877777778899999984321 1111122235578899
Q ss_pred EccCCCEEEEecCCCcEEEEecCCceee-EeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 379 FSLDGEKLVSGSSDGSIYFYNCRSSELE-RKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 379 ~s~~g~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
++++|+++++...++.|..||. +++.. ..+......+.++++.+++ .++++.. + .|..+
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG-SVWFALK-C-KIGKL 296 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS-CEEEECS-S-EEEEE
T ss_pred ECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC-CEEEEcc-C-ceEEe
Confidence 9999997777777889999998 44432 2233334678999999998 5666554 4 55544
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=6.4e-17 Score=160.49 Aligned_cols=275 Identities=12% Similarity=0.013 Sum_probs=174.5
Q ss_pred eeCCCCCEEEEecCCC---cEEEEEcccCCcceeeee------ccCCCceeEEEeCCCCCEEEEE-----ecCCcEEEEE
Q 013475 153 WSPTHAHLLASAGMDQ---SICIWNVWSRDQKLARVL------NFHSAAVNDVKWSQQGLFVLSC-----GYDCSSRLVD 218 (442)
Q Consensus 153 ~s~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~-----~~d~~v~vwd 218 (442)
.+|+ |++++....++ .-.||............+ .+|...+..++|||||++|+.+ +.+..|++||
T Consensus 75 p~~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRR-NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEE-TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEE-CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 3477 66666554433 345565432222222222 2355579999999999999844 3346899999
Q ss_pred CCCCcEE-EeeeCCcceEEEEEccCCCCEEEEeeCCCc-------------EEEEECCCCc----eEEEeccCCCCEeEE
Q 013475 219 VEKGIET-QSFREELAVRVVKFHPENSNLFLSGGSKGL-------------LRLWDIRTGK----VAHEYIQSLGPILDV 280 (442)
Q Consensus 219 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~i~~~ 280 (442)
+.+++.+ ...........++|+||| ..|+.++.|.. |++|++.+++ .+.....+...+..+
T Consensus 154 l~tg~~~~~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 154 VDSGEWSKVDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTTCCBCSSCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCCcCCcccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 9999865 211112222679999997 67777776665 9999998876 333334455678899
Q ss_pred EEeeCCCEEEeccCCCCCcCCCC----eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC----CCeEEEee
Q 013475 281 EFTINGKQFVSSSDVSGSNMSEN----SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN----GNYIAIFS 352 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~i~i~~ 352 (442)
.|+|||++|+..+. ++ .|.+|+..++. ...+... ........+ +++. ++..+. ++.|.+|+
T Consensus 233 ~~SpDG~~l~~~~~-------~~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 233 DLSRDGKYLFVYIL-------RGWSENDVYWKRPGEKD-FRLLVKG-VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp EECTTSCCEEEEEE-------ETTTEEEEEEECTTCSS-CEEEEEC-SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEB
T ss_pred EECCCCCEEEEEEe-------CCCCceEEEEEcCCCCc-eEEeecC-CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEe
Confidence 99999999988775 44 67777665443 2222222 223344445 5666 554443 57899999
Q ss_pred CCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC-CceeeEeeecc-CCceeEEEEcCCCCCEEE
Q 013475 353 STPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR-SSELERKIKAY-EQACIDVAFHPILPNIIG 430 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~ 430 (442)
+.+.... ....+..+.....+..++|+ ++.++++...|+..+||.+. +++....+..+ .+.+..+.+++++..+++
T Consensus 302 ~~~~~~~-~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 302 PAKPARA-SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYY 379 (695)
T ss_dssp TTBCSGG-GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred CCCCCcc-CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEE
Confidence 8765321 11233333223446678887 77788888889988888654 45556666655 667888999998844444
Q ss_pred Eee---CCCcEEEcC
Q 013475 431 SCS---WNGDVSVYE 442 (442)
Q Consensus 431 s~~---~dg~i~iwd 442 (442)
+.+ ..++|++||
T Consensus 380 ~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 380 VFTSFTTPRQIYKTS 394 (695)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEcCCCCCCEEEEEE
Confidence 443 346788875
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=1.1e-15 Score=133.25 Aligned_cols=235 Identities=9% Similarity=-0.022 Sum_probs=163.4
Q ss_pred ceEEEEeeCCCCCEEE-EecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE
Q 013475 147 AVNSINWSPTHAHLLA-SAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET 225 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 225 (442)
...+++++++ +++++ +...++.|.+|+..+. ........+...+.++++.++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 6789999999 78777 5577889999997433 22222223445788999999998666555 889999998766543
Q ss_pred Eee-eCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCe
Q 013475 226 QSF-REELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENS 304 (442)
Q Consensus 226 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~ 304 (442)
... .....+..+++.++| +++++...++.|.+|+..+.............+.+++++++|+++++... ++.
T Consensus 101 ~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-------~~~ 172 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-------NNR 172 (270)
T ss_dssp ECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-------GTE
T ss_pred eeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-------CCE
Confidence 222 133678999999986 67777777889999987655443322233346788899998887777665 788
Q ss_pred EEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC
Q 013475 305 IVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE 384 (442)
Q Consensus 305 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 384 (442)
|.+||.......... ......+..++++++|.
T Consensus 173 i~~~~~~~~~~~~~~------------------------------------------------~~~~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 173 VVKLEAESNNQVVLP------------------------------------------------FTDITAPWGIAVDEAGT 204 (270)
T ss_dssp EEEECTTTCCEEECC------------------------------------------------CSSCCSEEEEEECTTCC
T ss_pred EEEEecCCCceEeec------------------------------------------------ccCCCCceEEEECCCCC
Confidence 888887653211000 00013356889999998
Q ss_pred EEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 385 KLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 385 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++++...++.|.+||............+...+.++++++++ +++++...++.|++|+
T Consensus 205 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLT 261 (270)
T ss_dssp EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEc
Confidence 88887788899999987654433222334578999999998 6888888999999985
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=4.1e-17 Score=150.67 Aligned_cols=237 Identities=11% Similarity=-0.072 Sum_probs=153.0
Q ss_pred eeEEEeCCCCCEEEEEecC---CcEEEEECCCCcEEEeeeCCcceE-EEEEccCCCCEEEEeeCCCcEEEEECCCCceEE
Q 013475 193 VNDVKWSQQGLFVLSCGYD---CSSRLVDVEKGIETQSFREELAVR-VVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAH 268 (442)
Q Consensus 193 v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 268 (442)
+..++|+|||++|+..... ..|.+||+.+++......+..... .+.|+|+| +.|+.++.++.|++||+.+++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEE
Confidence 7788999999998877653 368889999887665544443333 37899997 778888888899999998887655
Q ss_pred EeccCCCCEeE-------------------EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeee
Q 013475 269 EYIQSLGPILD-------------------VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPC 329 (442)
Q Consensus 269 ~~~~~~~~i~~-------------------~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 329 (442)
....+...... +.|+|+++.++..... ....+..|.+||+.+++..... .....+..
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~ 192 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY--HTNPTCRLIKVDIETGELEVIH--QDTAWLGH 192 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH--HTCCCEEEEEEETTTCCEEEEE--EESSCEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec--cCCCcceEEEEECCCCcEEeec--cCCccccc
Confidence 55434331111 2344555544433100 0012678999999886643322 34456788
Q ss_pred EEecC-CCCeeEEEeCC------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC-----CcEEE
Q 013475 330 VRHHP-FDPYFVAQSNG------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD-----GSIYF 397 (442)
Q Consensus 330 ~~~~~-~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~i 397 (442)
+.|+| ++..++..+.+ ..|.+|+..+..... +..+.....+..+.|+|+|++|+..+.+ +.|++
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 99999 78877765543 368888876543211 1111112246678999999988776543 44999
Q ss_pred EecCCceeeEeeeccCCceeEEEEcC-CCCCEEEEee----------------CCCcEEEcC
Q 013475 398 YNCRSSELERKIKAYEQACIDVAFHP-ILPNIIGSCS----------------WNGDVSVYE 442 (442)
Q Consensus 398 wd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~----------------~dg~i~iwd 442 (442)
||+.+++...... ... .. +.|+| ++ ++|++++ .++.|++||
T Consensus 269 ~d~~~g~~~~l~~-~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 269 ANPETLENEEVMV-MPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp ECTTTCCEEEEEE-CCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEE
T ss_pred EECCCCCeEEeee-CCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 9998876543222 222 33 89999 98 5777654 246788875
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=8.7e-16 Score=152.79 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=167.4
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCC-----cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc----
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQ-----SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS---- 213 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~---- 213 (442)
+|...+..++|||| |++||.+..++ .|++||+.++ +...... ....+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg--~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCC--CCCcccc-cCcccceEEEEeCCCEEEEEEECCccccc
Confidence 45557899999999 88887765433 8999999665 3333222 1223678999999999999988766
Q ss_pred ------------EEEEECCCCcE--EEeee---CCcceEEEEEccCCCCEEEEeeC-----CCcEEEEECCC------Cc
Q 013475 214 ------------SRLVDVEKGIE--TQSFR---EELAVRVVKFHPENSNLFLSGGS-----KGLLRLWDIRT------GK 265 (442)
Q Consensus 214 ------------v~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~ 265 (442)
|++|++.+++. ...+. +...+..+.|+|+| ++|+..+. +..|++||+.+ +.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 99999988763 22223 34457899999998 55554433 56899999976 43
Q ss_pred -eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--cceeecccc-ceeeeEEecCCCCeeEE
Q 013475 266 -VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP--LSKQVYVEA-YTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 266 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~ 341 (442)
....+..+...+.. .|+++|+.|+..+.. ......|.+||+.++.. ...+..... ..+..+.+++++.++++
T Consensus 277 ~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~---~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 277 LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNR---HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp CCCEEEECSSSSCEE-EEEEETTEEEEEECT---TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred cceEEeeCCCCcEEE-EEeccCCEEEEEECC---CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 35556666555554 588999988776641 11145799999987642 223333322 36777888877778888
Q ss_pred EeCCCe--EEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe----cCCCcEEEEecCCce
Q 013475 342 QSNGNY--IAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG----SSDGSIYFYNCRSSE 404 (442)
Q Consensus 342 ~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g----~~dg~i~iwd~~~~~ 404 (442)
...++. |.+|++.++... ..+..+ .+.+..+.++++++.|+.. ...+.|++||+.+++
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~---~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALL---KIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEE---EEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEE---EecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 887874 566676444322 222222 4557788999998776633 245789999998876
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=1.2e-14 Score=130.87 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=168.0
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD--- 211 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--- 211 (442)
......+.++...+.+++|+++ +++++++..++.|.+||..++ +.......+...+.+++|+++++++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred cceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCC--cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 4455667777788899999999 888888888999999998544 3333333466789999999999888777666
Q ss_pred -CcEEEEECCCCcEEEeee---CCcceEEEEEccCCCCEEEEeeC------CCcEEEEECCCCceEEEeccCCCCEeEEE
Q 013475 212 -CSSRLVDVEKGIETQSFR---EELAVRVVKFHPENSNLFLSGGS------KGLLRLWDIRTGKVAHEYIQSLGPILDVE 281 (442)
Q Consensus 212 -~~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 281 (442)
+.|.+||.+++.....+. ....+..++++++| .++++... .+.|..||..+++... +......+..++
T Consensus 111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~ 188 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIA 188 (333)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEE
T ss_pred CceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceE
Confidence 689999998887653332 34578999999986 66666543 3567777765554432 223334578999
Q ss_pred EeeCCCEEE-eccCCCCCcCCCCeEEEEeCCC-Cccccee----e--ccccceeeeEEecCCCCeeEEEeCCCeEEEeeC
Q 013475 282 FTINGKQFV-SSSDVSGSNMSENSIVVWDVSR-EVPLSKQ----V--YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 282 ~~~~~~~l~-~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~----~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~ 353 (442)
|+++|+.++ +... ++.|.+||+.. +..+... . .........+++++++.++++...++.|.+|+.
T Consensus 189 ~~~dg~~l~v~~~~-------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 189 LSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp ECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ECCCCCEEEEEeCC-------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 999998654 4444 78999999964 2222111 1 111135678999999998888888899999998
Q ss_pred CCCcccccceeEeeccc----ccCcEEEEEccCCCEEEEecCCC
Q 013475 354 TPPFRLDKFKRYESHGV----SGFPIKCSFSLDGEKLVSGSSDG 393 (442)
Q Consensus 354 ~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~g~~dg 393 (442)
+. ... ..+..... ...+..++|+++++.|++++.++
T Consensus 262 ~g-~~~---~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 262 RG-YPI---GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TS-CEE---EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CC-CEE---EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 53 222 22222211 11578899999988777666553
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=3.6e-15 Score=129.89 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=181.3
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeC--Ccce
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE--ELAV 234 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~v 234 (442)
+++|++++.|+.|.+||.++ .+.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+.. ...+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDT--KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CEEEEECTTCSEEEEEETTT--TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CcEEEeeCCCCEEEEEECCC--CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 57899999999999999744 47777777665 4789999999999888 45788999999 8999998884 3578
Q ss_pred EEEEEccCCCCEEEEeeC-CCcEEEEECCCCceEEEeccC------CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEE
Q 013475 235 RVVKFHPENSNLFLSGGS-KGLLRLWDIRTGKVAHEYIQS------LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVV 307 (442)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 307 (442)
.++.+.++| +++++.+. ++.|..+|. +++.+.++... ......+.+.++|+++++... ++.|..
T Consensus 80 ~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-------~~~v~~ 150 (276)
T 3no2_A 80 QTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-------TSEVRE 150 (276)
T ss_dssp EEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-------TTEEEE
T ss_pred cccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-------CCEEEE
Confidence 899999997 77777776 778888885 67777666421 124556778899999999987 999999
Q ss_pred EeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc-cccCcEEEEEccCCCEE
Q 013475 308 WDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG-VSGFPIKCSFSLDGEKL 386 (442)
Q Consensus 308 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l 386 (442)
||.. ++.+.+.... .....+...+++..++++..++.|..+|..++..++.+....... ....+..+...++|+++
T Consensus 151 ~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp ECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred ECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 9998 7776665443 345567788999999999999999999999777765543211000 12336778888999988
Q ss_pred EEec--CC------CcEEEEec-CCceeeEeeeccC--CceeEE
Q 013475 387 VSGS--SD------GSIYFYNC-RSSELERKIKAYE--QACIDV 419 (442)
Q Consensus 387 ~~g~--~d------g~i~iwd~-~~~~~~~~~~~~~--~~v~~~ 419 (442)
++.. .. +..+++++ .+++.+.++..+. +.+..+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 8873 21 23355555 4678777776542 344443
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.73 E-value=3.4e-14 Score=129.22 Aligned_cols=269 Identities=7% Similarity=-0.108 Sum_probs=178.4
Q ss_pred eeCCCCCEEEEecC--CC---cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe----------cCCcEEEE
Q 013475 153 WSPTHAHLLASAGM--DQ---SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG----------YDCSSRLV 217 (442)
Q Consensus 153 ~s~~~~~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~v~vw 217 (442)
..|+ +++++.... .. .|.+||..+. +.+..+.....+ .++|+||+++|+++. .++.|.+|
T Consensus 28 ~~~~-~~~~yv~~~~~~~~~~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGAD-GRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCC-CCEEEEeCCcccCCccEEEEEECCCC--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3466 566666543 22 7899998544 566666643333 999999999999986 36789999
Q ss_pred ECCCCcEEEeeeCC--------cceEEEEEccCCCCEEEEee-C-CCcEEEEECCCCceEEE-eccCCCCEeEEEEeeCC
Q 013475 218 DVEKGIETQSFREE--------LAVRVVKFHPENSNLFLSGG-S-KGLLRLWDIRTGKVAHE-YIQSLGPILDVEFTING 286 (442)
Q Consensus 218 d~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~ 286 (442)
|..+.+.+..+... .....+.|+|+| ++|+++. . ++.|.++| .+++.+.. +... . ++.+.+++
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~ 176 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGA 176 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCC
Confidence 99998888777532 345689999997 5556554 3 57899999 99988877 5432 2 24455655
Q ss_pred -CEEEeccCCCCCcCCCCeEEEEeCCCCcccceee-----ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc
Q 013475 287 -KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV-----YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD 360 (442)
Q Consensus 287 -~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 360 (442)
+.+++.+. ||.+.++|. +++...... ...........+.+++..++..+..+.+.+.|........
T Consensus 177 ~~~~~~~~~-------dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 177 PSTFYLLCA-------QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred CceEEEEcC-------CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence 34455555 999999999 765542211 1111111223455666555555577899999986542110
Q ss_pred cceeEeecc--------cccCcEEEEEccCCCEEEEecC----------CCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 361 KFKRYESHG--------VSGFPIKCSFSLDGEKLVSGSS----------DGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 361 ~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
...+.... .......+.++++++.+++... .+.|.++|..+++.+.++.. .....+++|+
T Consensus 249 -~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s 326 (373)
T 2mad_H 249 -KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVA 326 (373)
T ss_pred -eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEEC
Confidence 11111000 0111234789999998887643 35799999999999998864 4468999999
Q ss_pred CCCCCEEEEee-CCCcEEEcC
Q 013475 423 PILPNIIGSCS-WNGDVSVYE 442 (442)
Q Consensus 423 p~~~~~l~s~~-~dg~i~iwd 442 (442)
||+..+++++. .++.|.|||
T Consensus 327 ~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 327 QDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CCCCeEEEEEcCCCCeEEEEE
Confidence 99942677776 589999986
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.72 E-value=3.5e-15 Score=133.79 Aligned_cols=274 Identities=8% Similarity=-0.031 Sum_probs=181.3
Q ss_pred EEeeCCCCCEEEEecC-----CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe----------cCCcEE
Q 013475 151 INWSPTHAHLLASAGM-----DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG----------YDCSSR 215 (442)
Q Consensus 151 ~~~s~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~v~ 215 (442)
....|+ ++.++.... ++.|.+.|..+ .+.+..+..-..+ . ++++||++++++++ .++.|.
T Consensus 38 ~~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCC-TTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCC-CCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 345678 666666544 67999999844 4667777644444 4 99999999998876 367899
Q ss_pred EEECCCCcEEEeeeCC--------cceEEEEEccCCCCEEEEee-C-CCcEEEEECCCCceEEEeccCCCCEeEEEEeeC
Q 013475 216 LVDVEKGIETQSFREE--------LAVRVVKFHPENSNLFLSGG-S-KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
+||..+++.+..+... .....+.|+||| ++++++. . ++.|.++|+.+++.+.++.... . ...+...
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g 188 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTA 188 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEE
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCC
Confidence 9999999998888622 246679999998 5555554 3 6899999999999988885432 1 2233334
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCCC-Ccccceee---cccccee-eeEEec-CCCCeeEEEeCCCeEEEeeCCCCcc-
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQV---YVEAYTC-PCVRHH-PFDPYFVAQSNGNYIAIFSSTPPFR- 358 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~---~~~~~~~-~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~- 358 (442)
.+.+++.+. ||.+.+.++.. ++...... ......+ ....|. ++|++++ .+.++.++++|..+...
T Consensus 189 ~~~~~~~~~-------DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 189 PDTFFMHCR-------DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp TTEEEEEET-------TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred CceeEEECC-------CCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce
Confidence 556666666 88888888876 44321110 0111111 123443 5665555 55578999999876532
Q ss_pred -cccceeEee-----cccccCcEEEEEccCCCEEEEecC----------CCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 359 -LDKFKRYES-----HGVSGFPIKCSFSLDGEKLVSGSS----------DGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 359 -~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
...+..+.. .-.......++++++++.+++... .+.|.++|+.+++.+..+.. ...+.+|+++
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs 339 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVS 339 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEEC
T ss_pred eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEEC
Confidence 111110000 000122335788999988887642 25799999999999998875 3478999999
Q ss_pred CCCCCEEEE-eeCCCcEEEcC
Q 013475 423 PILPNIIGS-CSWNGDVSVYE 442 (442)
Q Consensus 423 p~~~~~l~s-~~~dg~i~iwd 442 (442)
+|+..+|++ ...++.|.|+|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEcCCCCeEEEEE
Confidence 998435555 45689999886
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=3.2e-15 Score=135.40 Aligned_cols=241 Identities=9% Similarity=0.154 Sum_probs=154.5
Q ss_pred cceEEEEeeCCCCCEEEEecCC---Cc--EEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC---------
Q 013475 146 KAVNSINWSPTHAHLLASAGMD---QS--ICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD--------- 211 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~d---g~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------- 211 (442)
..+.+++|||| |++|+..+.+ +. |.+|++.++ +...... +.. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~~~g--~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADLETL--SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEETTTT--EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEECCCC--ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 56889999999 8888877643 33 677777443 4443333 334 9999999999999988743
Q ss_pred ------------------CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC-------cEEEEECCCCce
Q 013475 212 ------------------CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG-------LLRLWDIRTGKV 266 (442)
Q Consensus 212 ------------------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~ 266 (442)
..|++||+.+++.+..+... .+..+.|+|+| +++++..++ ...||.+.+++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~- 209 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK- 209 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE-
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc-
Confidence 57999999988773444433 78899999996 666665432 33444444444
Q ss_pred EEEeccCCCCEeEEEEeeCCCEEEeccCCCC-CcCCCCeEEEEeCCCCcccceeeccccceeee-EEecCCCCeeEEEeC
Q 013475 267 AHEYIQSLGPILDVEFTINGKQFVSSSDVSG-SNMSENSIVVWDVSREVPLSKQVYVEAYTCPC-VRHHPFDPYFVAQSN 344 (442)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 344 (442)
...+..+ ..+..+ +|+|++|+..+.... .......|.+|| +++ ...+...+...+.. +.|+ ++ ++++++.
T Consensus 210 ~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~ 281 (347)
T 2gop_A 210 EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFE 281 (347)
T ss_dssp EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEec
Confidence 3444444 455544 999998887764100 000134788888 333 23333334456665 8899 88 8888899
Q ss_pred CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcE-EEEecCCceeeEeeeccCC
Q 013475 345 GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSI-YFYNCRSSELERKIKAYEQ 414 (442)
Q Consensus 345 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i-~iwd~~~~~~~~~~~~~~~ 414 (442)
++.+++| +..+ .. ..+.. ....+..++|++ .++++++.++.. .||.+. ++ ...+..|..
T Consensus 282 ~~~~~l~-~~~g-~~---~~~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 282 EGSVNLY-IWDG-EI---KPIAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp TTEEEEE-EESS-SE---EEEEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred CCcEEEE-EcCC-ce---EEEec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 9999999 7632 21 22222 235678899999 677777766654 677665 54 444555544
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=7.8e-16 Score=152.69 Aligned_cols=248 Identities=10% Similarity=-0.011 Sum_probs=160.6
Q ss_pred ccccceEEEEeeCCCCCEEE-----EecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc----
Q 013475 143 HHTKAVNSINWSPTHAHLLA-----SAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS---- 213 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~---- 213 (442)
+|...+..++|||| |++|| .|+.+..|++||+.++.......+.. .....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence 56668999999999 88888 44556789999997653220111221 11268999999999999988776
Q ss_pred ---------EEEEECCCCcE--EEeee---CCcceEEEEEccCCCCEEEEeeCCC----cEEEEECCCCceEEEeccCCC
Q 013475 214 ---------SRLVDVEKGIE--TQSFR---EELAVRVVKFHPENSNLFLSGGSKG----LLRLWDIRTGKVAHEYIQSLG 275 (442)
Q Consensus 214 ---------v~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~ 275 (442)
|++|++.+++. ...+. +...+..+.|+|+| ++|+.++.++ .|++||..+++ ...+..+..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC
Confidence 99999998762 22232 34578899999998 4455444444 67777765554 344445555
Q ss_pred CEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--cceeeccc-cceeeeEEecCCCCeeEEEeCCCeEEEee
Q 013475 276 PILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP--LSKQVYVE-AYTCPCVRHHPFDPYFVAQSNGNYIAIFS 352 (442)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~i~~ 352 (442)
.+....+ ++|. |+..+.. ...++.|.+||+.++.. ...+.... ...+..+.++ ++.++++...++..++|.
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~---~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDE---GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECT---TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ceEEEEe-cCCc-EEEEECC---CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 5566666 6777 5444321 11268999999987643 22333222 4456778887 677778888888877775
Q ss_pred CCC-CcccccceeEeecccccCcEEEEEccCCCEEEE----ecCCCcEEEEecCCcee
Q 013475 353 STP-PFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVS----GSSDGSIYFYNCRSSEL 405 (442)
Q Consensus 353 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~----g~~dg~i~iwd~~~~~~ 405 (442)
.+. +... ..+..+ ..+.+..++++++++.|+. ....+.|++||+.+++.
T Consensus 347 ~~~~g~~~---~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 347 ATLKGKPV---RTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EETTCCEE---EECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EeCCCCee---EEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 542 2111 111111 1345667889999987773 33457899999988763
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=1.8e-14 Score=129.25 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=181.7
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeeccC-------CCceeEE
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNFH-------SAAVNDV 196 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~l 196 (442)
..+.+.++..-..+ . ++++|| |++|+.++ .++.|.+||..+. +.+..+.-. ......+
T Consensus 68 t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~ 142 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMT 142 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGE
T ss_pred CCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceE
Confidence 34556666544455 4 999999 77776664 3678999999554 555544311 2246689
Q ss_pred EeCCCCCEEEEEec--CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-CceEEEeccC
Q 013475 197 KWSQQGLFVLSCGY--DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKVAHEYIQS 273 (442)
Q Consensus 197 ~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 273 (442)
.|+|||++|+++.. ++.|.++|+.+++.+.++...+. ..+.|.+...+++.+.||.+.+.++.+ ++........
T Consensus 143 a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 143 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 99999999998874 68999999999999999875442 223455567788888899999999976 5543322111
Q ss_pred ----CCCEe-EEEEe-eCCCEEEeccCCCCCcCCCCeEEEEeCCCCc--ccceee-c--------cccceeeeEEecCCC
Q 013475 274 ----LGPIL-DVEFT-INGKQFVSSSDVSGSNMSENSIVVWDVSREV--PLSKQV-Y--------VEAYTCPCVRHHPFD 336 (442)
Q Consensus 274 ----~~~i~-~~~~~-~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~--------~~~~~~~~~~~~~~~ 336 (442)
..++. ...|. ++|++++... ++.|.+.|+.... ....+. . ........+.+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~vs~--------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVWPTY--------TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEEEBT--------TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred eccccccccccceeEcCCCcEEEEeC--------CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 12222 24664 5776666444 7999999997654 222221 0 012234557889999
Q ss_pred CeeEEEeC----------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC-EEEEe-cCCCcEEEEecCCce
Q 013475 337 PYFVAQSN----------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVSG-SSDGSIYFYNCRSSE 404 (442)
Q Consensus 337 ~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g-~~dg~i~iwd~~~~~ 404 (442)
+.+.+... .+.|.++|..+...+..+..- ..+..+++++|++ +|++. ..++.|.++|..+++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 88887643 368999999988766443321 2366899999997 66664 558999999999999
Q ss_pred eeEeeeccCCceeEEEEcCC
Q 013475 405 LERKIKAYEQACIDVAFHPI 424 (442)
Q Consensus 405 ~~~~~~~~~~~v~~~~~~p~ 424 (442)
.+.++..- +.-+.|.+++|
T Consensus 366 ~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 366 ELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEECCC-CSSCCEEEECC
T ss_pred EEEEecCC-CCCceeEECCc
Confidence 99988752 33445555554
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.70 E-value=2.2e-13 Score=123.90 Aligned_cols=252 Identities=10% Similarity=0.005 Sum_probs=171.1
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeeccC-------CCceeEEE
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNFH-------SAAVNDVK 197 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~l~ 197 (442)
++.+.++.....+ .++|+|| +++|+.+. .++.|.+||..+. +.+..+.-. ......+.
T Consensus 57 ~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~ 131 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred CeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceE
Confidence 3444555543344 9999999 88887775 3678999998543 444443211 13356899
Q ss_pred eCCCCCEEEEEec--CCcEEEEECCCCcEEEe-eeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec---
Q 013475 198 WSQQGLFVLSCGY--DCSSRLVDVEKGIETQS-FREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI--- 271 (442)
Q Consensus 198 ~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 271 (442)
|+|||++|++++. ++.|.++| .+++.+.. +..... +.+.+++...+++.+.||.+.++|. +++......
T Consensus 132 ~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 132 NTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred ECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 9999999999875 47899999 99998887 664433 4566777677888889999999999 877663322
Q ss_pred --cCCCCE-eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--cceeecc---------ccceeeeEEecCCCC
Q 013475 272 --QSLGPI-LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP--LSKQVYV---------EAYTCPCVRHHPFDP 337 (442)
Q Consensus 272 --~~~~~i-~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~ 337 (442)
....++ ....+.+++..++..+. .+.+.+.|+..... +..+... .......+.++++++
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPVY-------SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEcC-------CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 111222 23456676655544445 78999999975432 1111110 011233477899988
Q ss_pred eeEEEeC----------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC-EEEEec-CCCcEEEEecCCcee
Q 013475 338 YFVAQSN----------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVSGS-SDGSIYFYNCRSSEL 405 (442)
Q Consensus 338 ~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~-~dg~i~iwd~~~~~~ 405 (442)
.+.+... ++.|.++|..+......+ . .......++|++||+ +++++. .++.|.+||..+++.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i---~---~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---S---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE---E---CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 8777543 368999999877554332 1 123477999999999 777777 589999999999998
Q ss_pred eEee
Q 013475 406 ERKI 409 (442)
Q Consensus 406 ~~~~ 409 (442)
+.++
T Consensus 354 v~~i 357 (373)
T 2mad_H 354 DQST 357 (373)
T ss_pred Eeee
Confidence 8874
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=4.1e-15 Score=148.55 Aligned_cols=278 Identities=10% Similarity=-0.057 Sum_probs=170.0
Q ss_pred eCCCCCEEEEecCCC---cEEEEEcccC---Ccceeee------eccCCCceeEEEeCCCCCEEEEEecC-----CcEEE
Q 013475 154 SPTHAHLLASAGMDQ---SICIWNVWSR---DQKLARV------LNFHSAAVNDVKWSQQGLFVLSCGYD-----CSSRL 216 (442)
Q Consensus 154 s~~~~~~l~s~~~dg---~i~iwd~~~~---~~~~~~~------~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~v~v 216 (442)
+|+ |++++....++ .-.||..... ....... -.+|...+..++|||||++|+.++.+ ..|++
T Consensus 115 ~pd-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRR-GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEE-TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEE-CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 478 66665554333 3566665422 2222221 12244478899999999999987654 46999
Q ss_pred EECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--------------cEEEEECCCCc----eEEEeccCCCCEe
Q 013475 217 VDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--------------LLRLWDIRTGK----VAHEYIQSLGPIL 278 (442)
Q Consensus 217 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~----~~~~~~~~~~~i~ 278 (442)
||+.+++.+........+..++|+|| ..++++ ..++ .|++|++.++. .+.....+...+.
T Consensus 194 ~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 194 VGVADGKPLADELKWVKFSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp EETTTCCEEEEEEEEEESCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred EECCCCCCCCccCCCceeccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 99999987654322223457899998 555544 4433 38999998765 2222223334588
Q ss_pred EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-c-cceeeccccceeeeEEecCCCCeeEEEeC----CCeEEEee
Q 013475 279 DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-P-LSKQVYVEAYTCPCVRHHPFDPYFVAQSN----GNYIAIFS 352 (442)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~i~i~~ 352 (442)
.+.|+|||++|+..+.... .....|.+||+.++. . ...+..... ..... +++++..|+..+. +..|.+|+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGT--DPVNTVHVARVTNGKIGPVTALIPDLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp EEEECTTSCEEEEEEECTT--CSCCEEEEEEEETTEECCCEEEECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEECCCCCEEEEEEEccC--CCcceEEEEECCCCCCcccEEecCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 9999999999888764100 013489999998762 1 333332222 22233 3488888887665 34699999
Q ss_pred CCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC-CceeeEeeec-cCCceeEEEEcCCCCCEEE
Q 013475 353 STPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR-SSELERKIKA-YEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~ 430 (442)
+.+.. .....+..+ ....+..+.++ ++.++++...|+..+||.+. +++....+.. +.+.+..+.+++++..+++
T Consensus 348 ~~~~~--~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 348 LSGST--PRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp CSSSS--CEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred CCCCc--cccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEE
Confidence 87642 111222222 22335567777 56677888888887777554 4555666654 3567899999999854554
Q ss_pred Eee---CCCcEEEcC
Q 013475 431 SCS---WNGDVSVYE 442 (442)
Q Consensus 431 s~~---~dg~i~iwd 442 (442)
+.+ ..++|++||
T Consensus 424 ~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 424 SFSSFTQPATVLALD 438 (741)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEcCCCCCCEEEEEE
Confidence 443 346777775
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.4e-13 Score=120.10 Aligned_cols=237 Identities=8% Similarity=-0.000 Sum_probs=168.9
Q ss_pred cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEee-e-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc
Q 013475 188 FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF-R-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK 265 (442)
Q Consensus 188 ~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (442)
.+...+.++++.++++++++...++.|.+||.. ++..... . ....+.++++.++| .++++...++.|..||.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-Cc
Confidence 355688999999999877776667899999988 5543322 1 45678999999986 677776667889999986 43
Q ss_pred eE-EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC
Q 013475 266 VA-HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 266 ~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
.. ..+......+..+.+.++|+++++... ++.|.+||. ++.............+..+++.+++..+++...
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMN-------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecC-------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 32 222224457899999999988888776 789999998 443322222223446788999999988887777
Q ss_pred CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEe-eeccCCceeEEEEcC
Q 013475 345 GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERK-IKAYEQACIDVAFHP 423 (442)
Q Consensus 345 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~p 423 (442)
++.|..|+. ++.. ..+........+..++++++|+++++...++.|.+||. +++.... +..+...+.++++++
T Consensus 161 ~~~i~~~~~-~g~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SGDI----TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TCCE----EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred CCEEEEEcC-CCcE----EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC
Confidence 889999998 3322 11211222345778999999998887777889999998 6654321 233456789999999
Q ss_pred CCCCEEEEeeCCCcEEEcC
Q 013475 424 ILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iwd 442 (442)
++ .++++...++.|.+||
T Consensus 235 ~g-~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 235 GI-DLWFTEWGANKIGRLT 252 (299)
T ss_dssp TT-CEEEEETTTTEEEEEE
T ss_pred CC-CEEEeccCCceEEEEC
Confidence 98 6777665677888774
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=4.7e-14 Score=125.79 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=163.7
Q ss_pred CCCceeEEEeCCCCCEEEE-------EecCCcEEEEECCCCcEEEeee-----CCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 189 HSAAVNDVKWSQQGLFVLS-------CGYDCSSRLVDVEKGIETQSFR-----EELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s-------~~~d~~v~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
.-....+++|++++.++++ ...++.|.+||..+++...... +...+.++++++++.+++++.. .+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3446689999999987777 5678999999988887653322 3356899999998225555444 4479
Q ss_pred EEEECCCCceEEE-ecc----CCCCEeEEEEeeCCCEEEeccCCC--------CCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 257 RLWDIRTGKVAHE-YIQ----SLGPILDVEFTINGKQFVSSSDVS--------GSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 257 ~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~~~--------~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
.+||.. ++.... ... ....+.+++++++|+++++..... ......+.|..||.. ++.. .. ...
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~-~~~ 170 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QV-DTA 170 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-Ee-ccC
Confidence 999988 665433 221 123578999999998888776400 000001567777765 3322 21 112
Q ss_pred cceeeeEEec----CCCCeeEEE-eCCCeEEEeeCCCCcccccceeEeec-ccc-cCcEEEEEccCCCEEEEecCCCcEE
Q 013475 324 AYTCPCVRHH----PFDPYFVAQ-SNGNYIAIFSSTPPFRLDKFKRYESH-GVS-GFPIKCSFSLDGEKLVSGSSDGSIY 396 (442)
Q Consensus 324 ~~~~~~~~~~----~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~s~~g~~l~~g~~dg~i~ 396 (442)
......++++ ++++.++++ ..++.|.+|+............+... ... ..+..++++++|+++++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 2235678888 999766554 56789999997621111111111111 111 3467899999999888887788999
Q ss_pred EEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 397 FYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 397 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+||..+++.+..+..+...+.+++|++++..++++...++.|..||
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 9999878877777777788999999999832555655667787764
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=5.7e-14 Score=122.29 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=164.3
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEEEeeeCC--cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-CCE
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFREE--LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-GPI 277 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i 277 (442)
.+++|++++.|+.|.+||.++++.+.++... ..+.++.+.|+| ++|+ +.++.|+.||. +++.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 4578999999999999999999999999844 478999999997 7777 34678999998 899998887653 478
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-----cceeeeEEecCCCCeeEEEeCCCeEEEee
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-----AYTCPCVRHHPFDPYFVAQSNGNYIAIFS 352 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~i~i~~ 352 (442)
.++.+.++|+++++.+. .++.|..+|. +++.+....... ......+.+.+++.++++...++.|..||
T Consensus 80 ~~~~~~~dG~~lv~~~~------~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 80 QTARILPDGNALVAWCG------HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp EEEEECTTSCEEEEEES------TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred cccEECCCCCEEEEecC------CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 88999999999988662 1456777775 455444443211 12345567889999999999999999999
Q ss_pred CCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC------CceeEEEEcCCCC
Q 013475 353 STPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE------QACIDVAFHPILP 426 (442)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~p~~~ 426 (442)
.. +..++.+.. . ..+..+.+.++|++++++..++.|..+|..+|+.+.++..+. ..+..+...+++
T Consensus 153 ~~-G~~~w~~~~---~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G- 224 (276)
T 3no2_A 153 PN-GQLLNSVKL---S---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG- 224 (276)
T ss_dssp TT-SCEEEEEEC---S---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS-
T ss_pred CC-CCEEEEEEC---C---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC-
Confidence 98 655544332 1 335567888999999999988999999999999998886442 237888889998
Q ss_pred CEEEEe
Q 013475 427 NIIGSC 432 (442)
Q Consensus 427 ~~l~s~ 432 (442)
.++++.
T Consensus 225 ~i~v~~ 230 (276)
T 3no2_A 225 GLYICN 230 (276)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 677766
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=2.2e-14 Score=131.08 Aligned_cols=257 Identities=8% Similarity=-0.051 Sum_probs=174.3
Q ss_pred CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe----------cCCcEEEEECCCCcEEEeeeCC------
Q 013475 168 QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG----------YDCSSRLVDVEKGIETQSFREE------ 231 (442)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~------ 231 (442)
+.|.++|..+ .+.+..+..-..+ .+.++||+++|+++. .++.|.++|..+++.+..+...
T Consensus 99 ~~VsVID~~t--~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGST--GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTT--TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCC--CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 6999999854 4667776644444 899999999998886 3678999999999998887632
Q ss_pred --cceEEEEEccCCCCEEEEeeC--CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeEE
Q 013475 232 --LAVRVVKFHPENSNLFLSGGS--KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSIV 306 (442)
Q Consensus 232 --~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i~ 306 (442)
.....+.|+|+| ++++++.. ++.|.++|+.+++.+.++..... ....|++ ..+++.+. ||.+.
T Consensus 175 ~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~-------dG~~~ 242 (426)
T 3c75_H 175 VGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCR-------DGSLA 242 (426)
T ss_dssp BSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEET-------TSSEE
T ss_pred cCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcC-------CCCEE
Confidence 345678999997 55565543 67899999999998888764321 2233433 44555555 78888
Q ss_pred EEeCCCCcccce----eeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec--------ccccCc
Q 013475 307 VWDVSREVPLSK----QVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH--------GVSGFP 374 (442)
Q Consensus 307 iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--------~~~~~v 374 (442)
+.+...++.... +..........+.+.+++..++..+..+.+.+.|........ ...+... ......
T Consensus 243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~~~~~~~i~~g~~p~g~ 321 (426)
T 3c75_H 243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF-RAPIEALTEAERADDWRPGGW 321 (426)
T ss_dssp EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-CCCEESSCTTTGGGTEEECSS
T ss_pred EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-eeeeeeccccccccccccCCc
Confidence 888744433311 111111112345678888888777788999999986543210 0111100 000112
Q ss_pred EEEEEccCCCEEEEecC----------CCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee-CCCcEEEcC
Q 013475 375 IKCSFSLDGEKLVSGSS----------DGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS-WNGDVSVYE 442 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd 442 (442)
..++++++++.+++... ++.|.++|..+.+.+.++.. .....+++|+|++..++++.. .++.|.|+|
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 23689999988777642 35799999999999998874 346899999999942666666 589999986
No 203
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=1.9e-14 Score=129.99 Aligned_cols=267 Identities=11% Similarity=0.015 Sum_probs=176.7
Q ss_pred cceEEEEeeCCCCCEEEEec--CCCcEEEEEcccCCcceee------eeccCCCceeEEEeCCCCCEEEEEec-----CC
Q 013475 146 KAVNSINWSPTHAHLLASAG--MDQSICIWNVWSRDQKLAR------VLNFHSAAVNDVKWSQQGLFVLSCGY-----DC 212 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~------~~~~h~~~v~~l~~~~~~~~l~s~~~-----d~ 212 (442)
.....++++++ |+++++.. .++.++||.+.+ .++.. ....|...+..+++.++++++++-.. ++
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~--g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQ--DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEET--TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEECC--CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 78999999999 88888853 234467777752 23221 11235578999999999876665433 57
Q ss_pred cEEEEECCCCcEEEeeeC-------CcceEEEEEccCCCCEEEEee---CCCcEEEEECCCCceEEEeccCCCCEe-EEE
Q 013475 213 SSRLVDVEKGIETQSFRE-------ELAVRVVKFHPENSNLFLSGG---SKGLLRLWDIRTGKVAHEYIQSLGPIL-DVE 281 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~ 281 (442)
.|.+||+.+++.+..+.. ...+..+++++++..++++.. .++.|.+||+.+++..+.+..|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999999987776652 234689999986545556655 678999999998887766655422111 144
Q ss_pred EeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC-eEEEeeCCC---Cc
Q 013475 282 FTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN-YIAIFSSTP---PF 357 (442)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~i~i~~~~~---~~ 357 (442)
+..+|..+.+... ++.++.|.. ....++++|+++.|+++...+ .++.++... ..
T Consensus 174 ~~~~g~~~~~~~~-------~g~~~~~~~---------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~ 231 (343)
T 2qe8_A 174 LVIDGVPVQIGQP-------DGTVIRPHL---------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ 231 (343)
T ss_dssp CEETTEECBEECT-------TSCEECCCC---------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred eeECCEEEEeccC-------CCceeceec---------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence 5667777766666 787766532 346799999999888776554 666665321 00
Q ss_pred --ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec-cCCceeEEEEcCCCCCEEEEeeC
Q 013475 358 --RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA-YEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 358 --~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
.......+........+..++++++|+++++...++.|.+||..+++....... +.....+++|.+++ .++++.+.
T Consensus 232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~ 310 (343)
T 2qe8_A 232 LTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQ 310 (343)
T ss_dssp CCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECC
T ss_pred CChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCc
Confidence 000001111111123456799999999999999999999999856664333322 24568999999997 67777765
Q ss_pred CCcE
Q 013475 435 NGDV 438 (442)
Q Consensus 435 dg~i 438 (442)
.+.+
T Consensus 311 ~~~~ 314 (343)
T 2qe8_A 311 LHHS 314 (343)
T ss_dssp GGGS
T ss_pred cccc
Confidence 4433
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.64 E-value=4.8e-13 Score=118.17 Aligned_cols=241 Identities=8% Similarity=0.025 Sum_probs=157.4
Q ss_pred CCCceeEEEeCCCCC-EEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE
Q 013475 189 HSAAVNDVKWSQQGL-FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267 (442)
Q Consensus 189 h~~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (442)
+..-..+..|++++. ++++...++.|..||..+++. ..+.....+.+++++++| +++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEE
Confidence 344556889999544 555555688999999988765 455667789999999997 55544 3 567999999877653
Q ss_pred EEecc----CCCCEeEEEEeeCCCEEEeccCCCCC--cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE
Q 013475 268 HEYIQ----SLGPILDVEFTINGKQFVSSSDVSGS--NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 268 ~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (442)
..... ....++++.++++|+++++....... ......-.+|.+......... .........++|+|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-FDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-EEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-eeccccccceEEcCCCCEEEE
Confidence 32221 12357889999999977755320000 000122344444332222221 222234568999999987654
Q ss_pred -EeCCCeEEEeeCC--CCcccccceeEee-cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCcee
Q 013475 342 -QSNGNYIAIFSST--PPFRLDKFKRYES-HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACI 417 (442)
Q Consensus 342 -~~~~~~i~i~~~~--~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 417 (442)
.+.++.|.+|+++ ++. +...+.+.. ......+..++++++|++.++...++.|.+||..+++.+..+..+...++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~-~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQ-ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEGGGTEEEEEEECTTTCC-EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred ecCCCCcEEEEeccCCCCc-ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 5567899999874 332 111111111 11234567899999998888877788899999998999998887777899
Q ss_pred EEEEc-CCCCCEEEEeeCC
Q 013475 418 DVAFH-PILPNIIGSCSWN 435 (442)
Q Consensus 418 ~~~~~-p~~~~~l~s~~~d 435 (442)
+++|. |++..++++...+
T Consensus 245 ~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEESGGGCEEEEEEBCT
T ss_pred EEEEeCCCCCEEEEEcCCc
Confidence 99998 7875555655443
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=6.1e-14 Score=140.08 Aligned_cols=247 Identities=11% Similarity=0.017 Sum_probs=157.3
Q ss_pred ccccceEEEEeeCCCCCEEEEecCC-----CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc----
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMD-----QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS---- 213 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~---- 213 (442)
+|...+..++|||| |++||.++.+ ..|++||+.+++. +.. ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~--~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKP--LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCE--EEE-EEEEEESCCCEESTT-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCC--CCc-cCCCceeccEEEECC-CEEEEEEecCccccc
Confidence 34457889999999 8888776543 3699999966533 222 112223468899999 99998887654
Q ss_pred ----------EEEEECCCCcE--EEeee---CCcceEEEEEccCCCCEEEEeeCC-----CcEEEEECCCC--ceEEEec
Q 013475 214 ----------SRLVDVEKGIE--TQSFR---EELAVRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTG--KVAHEYI 271 (442)
Q Consensus 214 ----------v~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~ 271 (442)
|++|++.++.. ...+. +...+..+.|+|+| ++|+..+.+ ..|++||+.++ +....+.
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 89999987752 22333 22358899999997 555554433 47999999876 3144555
Q ss_pred cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEE
Q 013475 272 QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAI 350 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 350 (442)
.+...+... ++++|+.|+..+.. ...++.|.+||+.+.. ....+.......+..+.+. ++.++++...++..++
T Consensus 314 ~~~~~~~~~-~~~dg~~l~~~s~~---~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 314 PDLKAQWDF-VDGVGDQLWFVSGD---GAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECT---TCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECC---CCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 554555444 35889888877651 1114669999998752 3333333344456667776 5566777778887666
Q ss_pred eeCC-CCcccccceeEeecccccCcEEEEEccCCCEEEE----ecCCCcEEEEecCCce
Q 013475 351 FSST-PPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVS----GSSDGSIYFYNCRSSE 404 (442)
Q Consensus 351 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~----g~~dg~i~iwd~~~~~ 404 (442)
|..+ .+... ..+.. ...+.+..+.++++++.|+. ....+.|++||+.+++
T Consensus 389 ~~~~~~g~~~---~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPA---GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEE---EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCce---eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6543 12211 11111 12355778899999886663 3345789999998876
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.61 E-value=9e-13 Score=121.53 Aligned_cols=235 Identities=9% Similarity=0.036 Sum_probs=164.7
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEE
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAH 268 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~ 268 (442)
.....|+|+++++++++...++.|++||.++++............ ++|++++ ..|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999877777777999999999887766665444444 9999997 6667666655 79999987665444
Q ss_pred Ee----ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccccee---ecccccee--eeEEecCC-CCe
Q 013475 269 EY----IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ---VYVEAYTC--PCVRHHPF-DPY 338 (442)
Q Consensus 269 ~~----~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~--~~~~~~~~-~~~ 338 (442)
.+ ......+.++++++++..|+.+.. ++.|..||..+....... ........ ..++++|+ +.+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 44 224466789999995555555555 789999999876432110 11111111 28999995 566
Q ss_pred eEEEeCCCeEEEeeCCCCcccccceeEeecc-------------cccCcEEEEEccCCCEEEEec-CCCcEEEEecCCce
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDKFKRYESHG-------------VSGFPIKCSFSLDGEKLVSGS-SDGSIYFYNCRSSE 404 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~~g~-~dg~i~iwd~~~~~ 404 (442)
+++...++.|+.|+.+... ..+.+.. .-..+..++++++|+++++-. .++.|+.|++.+++
T Consensus 282 yv~d~~~~~I~~~~~~g~~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGEC-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEETTTTEEEEECTTCCE-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeCCCCEEEEEecCCCE-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 6666778899999987642 1222211 013477899999999888887 89999999987776
Q ss_pred eeEeeecc---------------CCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 405 LERKIKAY---------------EQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 405 ~~~~~~~~---------------~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
. ..+.++ -....++++++++ .++++-..++.|+.+
T Consensus 357 v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 357 V-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKY 406 (409)
T ss_dssp E-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEE
T ss_pred E-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEE
Confidence 4 344443 2458899999997 788888788888765
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=6.5e-12 Score=110.91 Aligned_cols=236 Identities=9% Similarity=0.029 Sum_probs=168.2
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe-ee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS-FR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV 266 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 266 (442)
....+.++++.++++++++...++.|.+||.. ++.... +. ....+..+++.+++ .++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe
Confidence 45678999999999888777678999999988 554432 11 23678999999986 677776667889999987 554
Q ss_pred E-EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 267 A-HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 267 ~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
. ..+......+.++++.++|+++++... ++.|..||.. ++...............+.+.++++.+++...+
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 166 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQN 166 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETT-------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccC-------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence 3 222223467899999999998888776 7899999987 443322222234467889999999977777678
Q ss_pred CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEe-eeccCCceeEEEEcCC
Q 013475 346 NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERK-IKAYEQACIDVAFHPI 424 (442)
Q Consensus 346 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~ 424 (442)
+.|..++..... ..+........+..++++++|+++++....+.|.+||. +++.... +..+...+.+++++++
T Consensus 167 ~~i~~~~~~g~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 167 NSIGRITNTGKL-----EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp TEEEEECTTCCE-----EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred CeEEEECCCCcE-----EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC
Confidence 899999984321 11222222345788999999988887777788999998 4543332 3334567899999999
Q ss_pred CCCEEEEeeCCCcEEEcC
Q 013475 425 LPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 425 ~~~~l~s~~~dg~i~iwd 442 (442)
+ +++++...++.|.+||
T Consensus 241 g-~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 241 S-EIWFTEWGANQIGRIT 257 (300)
T ss_dssp T-CEEEEETTTTEEEEEC
T ss_pred C-CEEEeccCCCeEEEEC
Confidence 8 6777665678888775
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.61 E-value=3e-13 Score=123.59 Aligned_cols=255 Identities=12% Similarity=0.069 Sum_probs=177.5
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeecc-------CCCceeEE
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNF-------HSAAVNDV 196 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l 196 (442)
..+.+.++..-..+ .++++|| +++|+.+. .++.|.++|..+. +.+..+.- .......+
T Consensus 108 t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~~~ 182 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQWMN 182 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGS
T ss_pred CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcceE
Confidence 34556666544455 8999999 77776665 3678999998554 55544431 12345688
Q ss_pred EeCCCCCEEEEEec--CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE----e
Q 013475 197 KWSQQGLFVLSCGY--DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE----Y 270 (442)
Q Consensus 197 ~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~ 270 (442)
.|+||+++|+++.. ++.|.+.|+.+++.+..+..... ....|++...+++.+.||.+.+.++.+++.... +
T Consensus 183 ~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~ 259 (426)
T 3c75_H 183 ALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVF 259 (426)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCC
T ss_pred EEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeee
Confidence 99999999999875 57899999999999988885442 344565567778888899999999866655432 2
Q ss_pred ccCCCCE-eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc--ceeec------c---ccceeeeEEecCCCCe
Q 013475 271 IQSLGPI-LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL--SKQVY------V---EAYTCPCVRHHPFDPY 338 (442)
Q Consensus 271 ~~~~~~i-~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~------~---~~~~~~~~~~~~~~~~ 338 (442)
.....++ ..+.|.+++..++.... .+.|.+.|+...... ..+.. . .......+.++++++.
T Consensus 260 ~v~~~p~~~~~~~~~dg~~~~~~s~-------~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 260 HTEDELLINHPAFSLRSGRLVWPTY-------TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp SCTTSCBCSCCEECTTTCEEEEEBT-------TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred ccCCCceeeEeeecCCCCEEEEEeC-------CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 2122222 23567888888777776 789999998654321 11110 0 0112234789999887
Q ss_pred eEEEeC----------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCC-EEEEec-CCCcEEEEecCCceee
Q 013475 339 FVAQSN----------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGE-KLVSGS-SDGSIYFYNCRSSELE 406 (442)
Q Consensus 339 l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~-~dg~i~iwd~~~~~~~ 406 (442)
+++... ++.|.++|..+...+..+..- .....+.|++||+ ++++.. .++.|.|+|+.+++.+
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEECC------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 777542 458999999988766444321 2367899999999 888877 5899999999999999
Q ss_pred Eee
Q 013475 407 RKI 409 (442)
Q Consensus 407 ~~~ 409 (442)
.++
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 887
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=1.4e-12 Score=116.19 Aligned_cols=243 Identities=8% Similarity=0.070 Sum_probs=161.8
Q ss_pred cccccceEEEEeeCCCCCEEEE-------ecCCCcEEEEEcccCCcceeee--eccCCCceeEEEeCCC-CCEEEEEecC
Q 013475 142 CHHTKAVNSINWSPTHAHLLAS-------AGMDQSICIWNVWSRDQKLARV--LNFHSAAVNDVKWSQQ-GLFVLSCGYD 211 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~--~~~h~~~v~~l~~~~~-~~~l~s~~~d 211 (442)
...-....+++|+++ ++++++ +..++.|.+||..++....... ..++...+.+++++++ ++++++ +..
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMR 91 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETT
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECC
Confidence 333456689999988 787777 6778899999975543221111 0124567899999999 665554 445
Q ss_pred CcEEEEECCCCcEEEe-ee-----CCcceEEEEEccCCCCEEEEeeCC---------------CcEEEEECCCCceEEEe
Q 013475 212 CSSRLVDVEKGIETQS-FR-----EELAVRVVKFHPENSNLFLSGGSK---------------GLLRLWDIRTGKVAHEY 270 (442)
Q Consensus 212 ~~v~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~ 270 (442)
+.|.+||.+ ++.... .. ....+.++++.++| +++++...+ +.|..||.. ++... +
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~ 167 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V 167 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-e
Confidence 579999998 765443 22 12358899999986 676666554 567778765 54433 2
Q ss_pred ccCCCCEeEEEEe----eCCCEEEec-cCCCCCcCCCCeEEEEeCC-CCcccc--ee--ecccc-ceeeeEEecCCCCee
Q 013475 271 IQSLGPILDVEFT----INGKQFVSS-SDVSGSNMSENSIVVWDVS-REVPLS--KQ--VYVEA-YTCPCVRHHPFDPYF 339 (442)
Q Consensus 271 ~~~~~~i~~~~~~----~~~~~l~~~-~~~~~~~~~d~~i~iwd~~-~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~l 339 (442)
..+......++|+ ++++.++.+ .. ++.|.+||+. .+.... .. ...+. .....+++++++.++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETP-------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETT-------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECC-------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 2333456889999 999765444 44 7899999986 332111 11 11111 456789999999988
Q ss_pred EEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEE-EecCCCcEEEEecCC
Q 013475 340 VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLV-SGSSDGSIYFYNCRS 402 (442)
Q Consensus 340 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~iwd~~~ 402 (442)
++...++.|.+|+..++... ..+.. ....+.+++|+++|++|+ +...++.|..|++..
T Consensus 241 v~~~~~~~i~~~d~~~g~~~---~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPK---MRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEETTTEEEEECTTCBSCS---EEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCEEEEEcCCCCcEe---EEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88888999999998754333 22222 225688999999999554 555678899999864
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.60 E-value=2.5e-12 Score=118.61 Aligned_cols=236 Identities=12% Similarity=0.073 Sum_probs=162.9
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC--cEEEEECCCCc
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC--SSRLVDVEKGI 223 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~--~v~vwd~~~~~ 223 (442)
.....|+|+++ ++++++...++.|++||..++ ........ ..... ++|+++++.|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46789999999 888888888899999998543 33333332 23334 99999999999888766 79999988776
Q ss_pred EEEee----e-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE----eccCCCC--EeEEEEeeC-CCEEEe
Q 013475 224 ETQSF----R-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE----YIQSLGP--ILDVEFTIN-GKQFVS 291 (442)
Q Consensus 224 ~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~--i~~~~~~~~-~~~l~~ 291 (442)
....+ . ....+.+++++|++..+++ +..++.|+.||..++..... ..+.... ...++|+|+ +.++++
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 54444 2 4566788999995434444 66788999999987653222 2222222 238999995 555555
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccc--------------cceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCC
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVE--------------AYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPP 356 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~ 356 (442)
-.. ++.|+.|+.... ........ -.....+++++++.++++-. .++.|+.|+..++
T Consensus 285 d~~-------~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 285 DQN-------LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp ETT-------TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred eCC-------CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 555 889999997653 11111110 12367899999999888877 8999999996554
Q ss_pred cccccceeEeecc-------------cccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 357 FRLDKFKRYESHG-------------VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 357 ~~~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
.. ..+.++. .-..+..++++++|.++++-..++.|+.+++
T Consensus 356 ~v----~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 356 YV----STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EE----EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EE----EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 32 2222220 1235788999999888888888888888775
No 211
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=7.7e-13 Score=116.87 Aligned_cols=194 Identities=12% Similarity=-0.009 Sum_probs=140.6
Q ss_pred CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEe
Q 013475 230 EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWD 309 (442)
Q Consensus 230 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 309 (442)
......+++|++++..+++++..++.|+.||..++ ...+..+...+.+++++++|+++++... ++.|.+||
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~-------~~~i~~~d 96 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHG-------LRRLERQR 96 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETT-------TTEEEEEC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecC-------CCeEEEEc
Confidence 45567899999997448888888999999999877 5666667778999999999998888776 78999999
Q ss_pred CCCCcccceeecc---ccceeeeEEecCCCCeeEE----Ee-------------CCCeEEEeeCCCCcccccceeEeecc
Q 013475 310 VSREVPLSKQVYV---EAYTCPCVRHHPFDPYFVA----QS-------------NGNYIAIFSSTPPFRLDKFKRYESHG 369 (442)
Q Consensus 310 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~----~~-------------~~~~i~i~~~~~~~~~~~~~~~~~~~ 369 (442)
..+++........ ....+..++++++|.++++ ++ ..+.|..++... .. ..+. .
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g--~~---~~~~--~ 169 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG--TL---SAPI--R 169 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--CE---EEEE--C
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC--CE---EEee--c
Confidence 9776543222111 1224567999999998887 32 134676676552 11 2222 2
Q ss_pred cccCcEEEEEccCCCEEEEecCCCcEEEEecC-Ccee---eEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR-SSEL---ERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
....+..++|+|+|++|++.+.++.|++|++. +++. ...+..+...+.+++++++| +++++. ++.|.+||
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLT 243 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEEC
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEEC
Confidence 22456789999999999888888999999986 4544 23333345667889999999 566665 78898886
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.58 E-value=2.6e-12 Score=113.92 Aligned_cols=239 Identities=10% Similarity=0.031 Sum_probs=155.2
Q ss_pred CCCceeEEEeCCCCC-EEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE
Q 013475 189 HSAAVNDVKWSQQGL-FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267 (442)
Q Consensus 189 h~~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (442)
.........|+++++ ++++...++.|..|+. +++..........+..++++++| +++++...++.|.+|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEE
Confidence 445567889999988 5556666889999998 45433333366778999999997 666665566789999985 5432
Q ss_pred EEecc----CCCCEeEEEEeeCCCEEEe----ccCCC------CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEec
Q 013475 268 HEYIQ----SLGPILDVEFTINGKQFVS----SSDVS------GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHH 333 (442)
Q Consensus 268 ~~~~~----~~~~i~~~~~~~~~~~l~~----~~~~~------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 333 (442)
..... ....+.++.++++|+++++ +.... ......+.|..||..+++.... . .......++|+
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~--~~~~p~gl~~s 196 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A--DLDHPNGLAFS 196 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E--EESSEEEEEEC
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e--cCCCCcceEEc
Confidence 22111 1234678999999998886 32100 0000135677888765543322 2 22345679999
Q ss_pred CCCCeeEEEeCC------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeE
Q 013475 334 PFDPYFVAQSNG------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELER 407 (442)
Q Consensus 334 ~~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~ 407 (442)
|+++.|+++... +.|.+|++.... +.....+.. .....+..++++++|++. +++.+| |.+|+. +++.+.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~-~~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~-~g~~~~ 271 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS-VPDGLPDGFCVDRGGWLW-SSSGTG-VCVFDS-DGQLLG 271 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC-CSSSCCCSEEECTTSCEE-ECCSSE-EEEECT-TSCEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE-CCCCCCCeEEECCCCCEE-EecCCc-EEEECC-CCCEEE
Confidence 999988776665 789999987543 211111111 122445678999999944 444454 999997 577777
Q ss_pred eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 408 KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 408 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
.+..+. .+.+++|.+++ +.|..++.++..++
T Consensus 272 ~~~~~~-~~~~~~f~~d~-~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 272 HIPTPG-TASNCTFDQAQ-QRLFITGGPCLWML 302 (305)
T ss_dssp EEECSS-CCCEEEECTTS-CEEEEEETTEEEEE
T ss_pred EEECCC-ceeEEEEeCCC-CEEEEEcCCeEEEE
Confidence 776554 68999999887 56666666665554
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.56 E-value=1.6e-11 Score=109.89 Aligned_cols=228 Identities=12% Similarity=0.099 Sum_probs=150.1
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 226 (442)
-..+..|+++++.++++...++.|.+||..++ .. ..+. ....+.++.|+++++++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG--RK-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT--EE-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC--cE-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 35678999986677778778899999998544 22 2233 34679999999999877754 44 49999998887654
Q ss_pred eeeC-----CcceEEEEEccCCCCEEEEeeC------CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec-cC
Q 013475 227 SFRE-----ELAVRVVKFHPENSNLFLSGGS------KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS-SD 294 (442)
Q Consensus 227 ~~~~-----~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~ 294 (442)
.... ...+..++++++| +++++... .+.|..++ +++.. .+.........++|+++++.++.+ +.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 3321 2458899999997 55554432 24566666 45433 332333456789999999876554 43
Q ss_pred CCCCcCCCCeEEEEeCC--CC-cccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccc
Q 013475 295 VSGSNMSENSIVVWDVS--RE-VPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
++.|.+||+. ++ ...... + +.+.. ...
T Consensus 200 -------~~~I~~~d~~~~~Gl~~~~~~----------------------------~-~~~~~--------------~~~ 229 (326)
T 2ghs_A 200 -------VNRLMRVPLDARTGLPTGKAE----------------------------V-FIDST--------------GIK 229 (326)
T ss_dssp -------TCEEEEEEBCTTTCCBSSCCE----------------------------E-EEECT--------------TSS
T ss_pred -------CCEEEEEEcccccCCcccCce----------------------------E-EEECC--------------CCC
Confidence 6889999986 33 210000 0 00000 001
Q ss_pred cCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc-CCCCCEEEEeeCC
Q 013475 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH-PILPNIIGSCSWN 435 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d 435 (442)
..+..++++++|+++++...++.|.+||. +++.+..+..+...+++++|. +++..++++...+
T Consensus 230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 22456888999988877766788999998 577777777777789999998 8874454555444
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=1.8e-13 Score=123.31 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=129.7
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCc-----------EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEE
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI-----------ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWD 260 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 260 (442)
.++.+++++...++++|+.++ +++|+++..+ ......... |+.++| ++ .+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEE
Confidence 689999999999999999875 6679875433 223344566 999999 64 788887 889999999
Q ss_pred CCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE
Q 013475 261 IRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (442)
+++.........+...+.++.+.+. .++++.. ||.|.+||+.++....
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~-------dG~L~v~dl~~~~~~~----------------------- 160 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNS-------VNDLSALDLRTKSTKQ----------------------- 160 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEET-------TSEEEEEETTTCCEEE-----------------------
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEEC-------CCCEEEEEccCCcccc-----------------------
Confidence 9887666666667777887776644 2666666 8999999988654210
Q ss_pred EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee--eEee------e--
Q 013475 341 AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL--ERKI------K-- 410 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~--~~~~------~-- 410 (442)
....|++++|||+| ++.|..||++++|+...++. ..++ .
T Consensus 161 -----------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~ 209 (388)
T 1xip_A 161 -----------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL 209 (388)
T ss_dssp -----------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS
T ss_pred -----------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccc
Confidence 01247899999999 67888999999999887775 5556 2
Q ss_pred -ccCCceeEEEEcCCCCCEEEEee
Q 013475 411 -AYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 411 -~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
+|...|.+|.|.+++ .+|++-+
T Consensus 210 ~~~~~~V~sI~wl~~~-~flv~y~ 232 (388)
T 1xip_A 210 PVEEYSPLSVTILSPQ-DFLAVFG 232 (388)
T ss_dssp CTTTSEEEEEEESSSS-EEEEEEE
T ss_pred cCCCeeEEEEEEecCC-eEEEEEc
Confidence 367899999999998 6776643
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=1.8e-13 Score=123.34 Aligned_cols=172 Identities=15% Similarity=0.048 Sum_probs=131.2
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC---------cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRD---------QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
.++.+++++. ..+|++|+.+ .+++|++++.. ........ +.. |+.|+| |+++|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 6899999999 7788888877 56679975332 12222333 566 999999 89999998 88999999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
|+.+........ +...+.++.+.+. + ++++..||.|.+||+.++.... +...|++++|+|+| ++.+..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~-- 180 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK-- 180 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET--
T ss_pred EchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc--
Confidence 998876554444 6677888887754 3 7888999999999999877643 33589999999999 556666
Q ss_pred CCcCCCCeEEEEeCCCCcc--cceee-----c---cccceeeeEEecCCCCeeEE
Q 013475 297 GSNMSENSIVVWDVSREVP--LSKQV-----Y---VEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~--~~~~~-----~---~~~~~~~~~~~~~~~~~l~~ 341 (442)
||.+++|+...... ...+. . .+...+.++.|.+++.++++
T Consensus 181 -----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 181 -----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999998877653 22331 1 25678999999999999887
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.54 E-value=1.4e-11 Score=108.74 Aligned_cols=229 Identities=14% Similarity=0.160 Sum_probs=151.4
Q ss_pred ccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 143 HHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
.+..--.+..|+++++.++++...++.|..||..++. . ..+. ....+.+++++++++++++ . ++.|.+||.+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--V-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--E-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--E-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3444556899999757778888888999999985542 2 2333 4578999999999995554 4 667999999888
Q ss_pred cEEEeeeC-----CcceEEEEEccCCCCEEEEeeCC---------CcEEEEECCC-CceEEEeccCCCCEeEEEEeeCCC
Q 013475 223 IETQSFRE-----ELAVRVVKFHPENSNLFLSGGSK---------GLLRLWDIRT-GKVAHEYIQSLGPILDVEFTINGK 287 (442)
Q Consensus 223 ~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 287 (442)
+....... ...++.++++++| +++++...+ ....+|.+.. ++. ..+.......+.++|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCC
Confidence 65443332 2458899999997 555544221 2234444432 333 22333334568899999998
Q ss_pred EEE-eccCCCCCcCCCCeEEEEeCC--CCcccce--ee--ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc
Q 013475 288 QFV-SSSDVSGSNMSENSIVVWDVS--REVPLSK--QV--YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD 360 (442)
Q Consensus 288 ~l~-~~~~~~~~~~~d~~i~iwd~~--~~~~~~~--~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 360 (442)
.|+ +.+. ++.|.+||+. ++..... .. .........+++.++|.+.++...++.|..|+..++....
T Consensus 162 ~lyv~~~~-------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 162 IFYYIDSL-------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEEEGG-------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEEEecCC-------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 664 4444 7899999974 4432111 11 1123456789999999888888888999999998654432
Q ss_pred cceeEeecccccCcEEEEEc-cCCCEEEEecC
Q 013475 361 KFKRYESHGVSGFPIKCSFS-LDGEKLVSGSS 391 (442)
Q Consensus 361 ~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~ 391 (442)
.+... ...+++++|. |+++.|++++.
T Consensus 235 ---~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 ---TVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ---EEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred ---EEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 22222 2458899998 88887765543
No 217
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=2.3e-12 Score=112.12 Aligned_cols=200 Identities=8% Similarity=-0.010 Sum_probs=145.7
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIE 224 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 224 (442)
...+.+++++++ ++++++.. ++.|.+||.... ............+.++++.++++++++...++.|.+|+..+...
T Consensus 66 ~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 66 LYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSN--NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CCSCCCEEECTT-CCEEEEET-TTEEEEECTTCS--CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred cCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCc--eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 356789999998 77666666 889999997433 22222122336789999999998777777788999998766544
Q ss_pred EEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 225 TQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 225 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
..... ....+.+++++++| +++++...++.|.+||............+...+..++++++|..+++... ++
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~-------~~ 213 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN-------TN 213 (270)
T ss_dssp EECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT-------TS
T ss_pred EeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC-------CC
Confidence 33222 33467889999987 67777777889999998776554433334467889999999988887776 88
Q ss_pred eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 357 (442)
.|.+||........ ........+..+++++++..+++...++.|++|+.....
T Consensus 214 ~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 214 QVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred cEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999987654322 222222467889999999988888899999999987653
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.52 E-value=7.6e-12 Score=110.93 Aligned_cols=242 Identities=12% Similarity=0.061 Sum_probs=156.4
Q ss_pred ceecccccccceEEEEeeCCCCC-EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAH-LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.+..+..+........|+++ ++ +++++..++.|..|+. ++ . ...+..+...+..++++++|+++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~-~g--~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE-DG--T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET-TS--C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC-CC--C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 34445555667789999999 65 7788888899999986 22 2 234444667889999999998666555567899
Q ss_pred EEECCCCcEEEeee-----CCcceEEEEEccCCCCEEEE----eeC-------------CCcEEEEECCCCceEEEeccC
Q 013475 216 LVDVEKGIETQSFR-----EELAVRVVKFHPENSNLFLS----GGS-------------KGLLRLWDIRTGKVAHEYIQS 273 (442)
Q Consensus 216 vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~ 273 (442)
+|+.+ ++...... ....+..+++.++| .++++ |.. .+.|+.||..+++..... .
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~ 186 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D 186 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence 99986 55433222 12346789999997 67775 332 256888887666654333 3
Q ss_pred CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce---eeccccceeeeEEecCCCCeeEEEeCCCeEEE
Q 013475 274 LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK---QVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAI 350 (442)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i 350 (442)
......++|+++++.|+.+.... ....++.|.+|++.... +.. ...........+.+.++|++.++ .. +.|.+
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~-~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~-~gv~~ 262 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPE-QGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS-SG-TGVCV 262 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC-CS-SEEEE
T ss_pred CCCCcceEEcCCCCEEEEEecCC-cCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe-cC-CcEEE
Confidence 34668899999999777765400 00001689999987643 211 11112234567889999985444 43 45999
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
|+.... .+ ..+... ..+..++|+++++.|+.++.++ ++.++
T Consensus 263 ~~~~g~-~~---~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 263 FDSDGQ-LL---GHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECTTSC-EE---EEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ECCCCC-EE---EEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 998543 22 222222 2477899999998888877664 44433
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=3.8e-12 Score=125.95 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=157.6
Q ss_pred ccccceEEEEeeCCCCCEEEE-----ecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCc----
Q 013475 143 HHTKAVNSINWSPTHAHLLAS-----AGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCS---- 213 (442)
Q Consensus 143 ~h~~~V~~~~~s~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~---- 213 (442)
+|...+..++|||| |++||- |+.+..|++||+.+++... ..+. ......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLE-TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEE-EEEE--EEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCc-cccC--CceeccEEEe-CCCEEEEEEecCccccc
Confidence 46668999999999 887773 3333579999997663221 1222 1123578999 9999999887743
Q ss_pred ---------EEEEECCCCcE--EEeeeC----CcceEEEEEccCCCCEEEEeeC---CCcEEEEECCCCc-eEEEeccCC
Q 013475 214 ---------SRLVDVEKGIE--TQSFRE----ELAVRVVKFHPENSNLFLSGGS---KGLLRLWDIRTGK-VAHEYIQSL 274 (442)
Q Consensus 214 ---------v~vwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~ 274 (442)
|++|++.++.. ...+.. ......+.|+|+|..++++... +..|+++|+.++. ....+..+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 99999987643 333332 2347789999998555555543 3589999998763 345555555
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--cceeeccccceeeeEEecCCCCeeEEEeCCC---eEE
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP--LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN---YIA 349 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~i~ 349 (442)
...... |+++|..|+..+.. ....+.|..+|+.++.. ...+. .+...+. .|+++++.|+....++ .|+
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~---~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNR---DAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECT---TCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred CceEEE-EeccCCEEEEEECC---CCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 555554 67777766655431 01146899999987653 22222 2332333 8888898888765544 688
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC----CcEEEEecCCcee
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD----GSIYFYNCRSSEL 405 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~iwd~~~~~~ 405 (442)
+|++.+... ..+. ....+.+..+.++++++.|+....+ +.|+.||+.+++.
T Consensus 354 ~~d~~g~~~----~~l~-~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 354 QFDYEGKRV----REVA-LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EECTTSCEE----EEEC-CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEECCCCee----EEee-cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 998875421 1111 1122445677788888777655444 7899999887653
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.50 E-value=3e-12 Score=115.12 Aligned_cols=249 Identities=6% Similarity=-0.154 Sum_probs=162.0
Q ss_pred cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe----------cCCcEEEEECCCCcEEEeeeCC-------
Q 013475 169 SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG----------YDCSSRLVDVEKGIETQSFREE------- 231 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~------- 231 (442)
+|.++|..+ .+.+..+..-..+ .+.++||+++++++. .++.|.+||+.+++.+..+...
T Consensus 47 ~vsvID~~t--~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGC--GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTT--TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCC--CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 788999844 4666777644455 799999999999987 3688999999999999998732
Q ss_pred -cceEEEEEccCCCCEEEEeeC--CCcEEE--EECCCCceEEEeccCCCCEeEEEEeeCC-CEEEeccCCCCCcCCCCeE
Q 013475 232 -LAVRVVKFHPENSNLFLSGGS--KGLLRL--WDIRTGKVAHEYIQSLGPILDVEFTING-KQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 232 -~~v~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~d~~i 305 (442)
.....+.|+||| ++++++.. +..|.+ +|+.+ +.++... +. +.+.|++ ..+++.+. |+.+
T Consensus 123 g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~-------dg~~ 187 (368)
T 1mda_H 123 GPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSC-------PASL 187 (368)
T ss_dssp SCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCC-------TTSC
T ss_pred CCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcC-------CCCE
Confidence 346789999998 55555543 456888 99877 4444321 11 1233444 34445555 8888
Q ss_pred EEEeCCC-----Cccccee---eccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc--cccceeEe----ecc-c
Q 013475 306 VVWDVSR-----EVPLSKQ---VYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR--LDKFKRYE----SHG-V 370 (442)
Q Consensus 306 ~iwd~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~--~~~~~~~~----~~~-~ 370 (442)
.+.|+.+ ++..... ......+. . .+++..++..+. +.+.+.|...... ...+.... ... .
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence 8899886 3322110 00111122 2 556666666556 8999999865321 11110000 000 0
Q ss_pred ccCcEEEEEccCCCEEEEecC---------CCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEee-CCCcEEE
Q 013475 371 SGFPIKCSFSLDGEKLVSGSS---------DGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCS-WNGDVSV 440 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~i 440 (442)
......++|+++|+.++++.. ++.+.++|+.+.+.+.++.... ...+++|++++..++++.. .++.|.|
T Consensus 263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEE
Confidence 011122689999998887543 2356799999999999887543 6899999999955777777 5999999
Q ss_pred cC
Q 013475 441 YE 442 (442)
Q Consensus 441 wd 442 (442)
+|
T Consensus 342 ID 343 (368)
T 1mda_H 342 YD 343 (368)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.48 E-value=1.3e-10 Score=104.88 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=153.6
Q ss_pred EeC--CCCCEEEEEe-cCCcEEEEECCCC----cEEEeee--------CCcceEEEEEccCCCCEEEEeeCC------Cc
Q 013475 197 KWS--QQGLFVLSCG-YDCSSRLVDVEKG----IETQSFR--------EELAVRVVKFHPENSNLFLSGGSK------GL 255 (442)
Q Consensus 197 ~~~--~~~~~l~s~~-~d~~v~vwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d------g~ 255 (442)
.++ .+.++|+..+ .++.|.|+|+.+. +..+.++ .......+.+.|+| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 446 7777777655 4788999999765 5666662 22356678889986 66665554 78
Q ss_pred EEEEECCCCceEEEeccCCC---CEeEEEEeeCCCEEEeccCC------CCCc------CCCCeEEEEeCCCCcccceee
Q 013475 256 LRLWDIRTGKVAHEYIQSLG---PILDVEFTINGKQFVSSSDV------SGSN------MSENSIVVWDVSREVPLSKQV 320 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~~------~~~~------~~d~~i~iwd~~~~~~~~~~~ 320 (442)
|.++|..+++.+.++..... --..+.|+|+++.+++.... .+.. ..+.+|.+||+.+.+.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 99999999999988864322 23458889999988888410 0000 127899999999877666665
Q ss_pred cc-ccceeeeEE--ecCCCCeeEEEe------CCCeEEEeeCCCCcccccceeEeecc----------------cccCcE
Q 013475 321 YV-EAYTCPCVR--HHPFDPYFVAQS------NGNYIAIFSSTPPFRLDKFKRYESHG----------------VSGFPI 375 (442)
Q Consensus 321 ~~-~~~~~~~~~--~~~~~~~l~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~----------------~~~~v~ 375 (442)
.. .......+. ++|+++++.+++ .++.|.+|..+.+ .....+...... ....+.
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 54 222334444 499999888766 5668877666542 111111110000 023467
Q ss_pred EEEEccCCCEEEEecC-CCcEEEEecCC---ceeeEeeeccC--------------CceeEEEEcCCCCCEEEEee
Q 013475 376 KCSFSLDGEKLVSGSS-DGSIYFYNCRS---SELERKIKAYE--------------QACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~~~~~p~~~~~l~s~~ 433 (442)
.+.+|+||++|+++.. .+.|.+||+.. .+++..+.... +.-..++++||| ++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CEEEEEc
Confidence 8999999999987764 68899999853 35555554321 135889999999 5666655
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=5e-12 Score=125.13 Aligned_cols=241 Identities=11% Similarity=0.062 Sum_probs=151.3
Q ss_pred CCCceeEEEeCCCCCEEEEEec-----CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC---------
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGY-----DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG--------- 254 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------- 254 (442)
|...+..++|||||++|+.+.. ...|++||+.+++.+...........++|+ |+ +.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN-EGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT-TEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC-CEEEEEEecCccccccccc
Confidence 5567889999999999885432 357999999999876542222223567899 87 5555555553
Q ss_pred ----cEEEEECCCCc----eEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccceeecccc
Q 013475 255 ----LLRLWDIRTGK----VAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSKQVYVEA 324 (442)
Q Consensus 255 ----~i~iwd~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~ 324 (442)
.|++|++.++. .+..... +...+..+.|++||++|+..... ....+.|.++|+.++. ....+.. ..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~~~~~~~~l~~-~~ 280 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN---STSGNRLYVKDLSQENAPLLTVQG-DL 280 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES---SSSCCEEEEEETTSTTCCCEEEEC-SS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc---CCCCcEEEEEECCCCCCceEEEeC-CC
Confidence 49999998764 2333333 44567889999999988654420 0114689999998764 2223222 22
Q ss_pred ceeeeEEecCCCCeeEEEe-C---CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC---cEEE
Q 013475 325 YTCPCVRHHPFDPYFVAQS-N---GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG---SIYF 397 (442)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~-~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~i 397 (442)
...... +++++..|+..+ . ...|..+++.+.... .+..+..+. ..+. .|++++++|+....++ .|++
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 222222 556666655543 3 367999998875431 123333333 2233 8999999888765543 6899
Q ss_pred EecCCceeeEeee-ccCCceeEEEEcCCCCCEEEEeeCC---CcEEEcC
Q 013475 398 YNCRSSELERKIK-AYEQACIDVAFHPILPNIIGSCSWN---GDVSVYE 442 (442)
Q Consensus 398 wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd 442 (442)
||+..+. ...+. ...+.+..+.+++++..++++.+.. +.|+.||
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 9987544 34443 2345677888888885555554432 6677665
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.47 E-value=6.2e-12 Score=113.03 Aligned_cols=260 Identities=10% Similarity=-0.015 Sum_probs=171.6
Q ss_pred CCcceecccccccceEEEEeeCCCCCEEEEec----------CCCcEEEEEcccCCcceeeeeccC-------CCceeEE
Q 013475 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAG----------MDQSICIWNVWSRDQKLARVLNFH-------SAAVNDV 196 (442)
Q Consensus 134 ~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~l 196 (442)
..+.+.++..-..+ .+.|+|| +++++.+. .++.|.+||..+. +.+..+... ......+
T Consensus 55 t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~~g~~P~~i 129 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSE
T ss_pred CCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccccCCCcceE
Confidence 35666666654556 7999999 77777765 3689999999554 556665422 1346789
Q ss_pred EeCCCCCEEEEEec--CCcEEE--EECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-----CceE
Q 013475 197 KWSQQGLFVLSCGY--DCSSRL--VDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-----GKVA 267 (442)
Q Consensus 197 ~~~~~~~~l~s~~~--d~~v~v--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~ 267 (442)
+|+|||++|+++.. +..|.+ +|+.+ +..+...+. ..+.|++...+++.+.||.+.+.|+.+ ++..
T Consensus 130 a~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 130 GNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred EEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 99999999999875 457888 99887 445543222 234566667778888899999999876 3322
Q ss_pred EE----eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc--ccceeecc------c---cceeeeEEe
Q 013475 268 HE----YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV--PLSKQVYV------E---AYTCPCVRH 332 (442)
Q Consensus 268 ~~----~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~~~------~---~~~~~~~~~ 332 (442)
.. +.....+. . ++++..++..+ .+.|.+.|..... .+..+... . ......+.+
T Consensus 204 ~~~t~~i~vg~~P~---~-~~~~~~~~~vs--------~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 204 AQCTGAQNCSSQAA---Q-ANYPGMLVWAV--------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCSCTTSCBCSCCE---E-ETTTTEEEECB--------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred EEeeeeeeCCCCcc---c-cccCCEEEEEc--------CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 11 11122333 3 66666666665 2688888886532 11111111 1 111233789
Q ss_pred cCCCCeeEEEeC---------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE-EEEec-CCCcEEEEecC
Q 013475 333 HPFDPYFVAQSN---------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK-LVSGS-SDGSIYFYNCR 401 (442)
Q Consensus 333 ~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~-~dg~i~iwd~~ 401 (442)
+++++.++++.. ++.+.++|..+...+..+..- .....++|++||++ +++.. .++.|.++|+.
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 999998887543 246679999987666544322 13678999999984 55555 58999999999
Q ss_pred CceeeEeeeccCCceeEEEEcC
Q 013475 402 SSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 402 ~~~~~~~~~~~~~~v~~~~~~p 423 (442)
+++.+.++... .....+++.+
T Consensus 346 t~kvv~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 346 SDQDQSSVELD-KGPESLSVQN 366 (368)
T ss_dssp SCEEEEECCCC-SCCCEEECCC
T ss_pred CCcEEEEEECC-CCCCEEEeec
Confidence 99999998754 3455666654
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.44 E-value=9e-11 Score=115.43 Aligned_cols=260 Identities=15% Similarity=0.107 Sum_probs=169.6
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeecc--CCCceeEEEeCC---CCCEEEEEe------cCCcEEEEECCCCcEEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNF--HSAAVNDVKWSQ---QGLFVLSCG------YDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~---~~~~l~s~~------~d~~v~vwd~~~~~~~~ 226 (442)
+..|+.++.|+.|..+|..++ +.+..+.. +......+..+| ++ .+++++ .++.|+.||..+|+.+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG--~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTG--QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCC--CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 446788888999999999665 44444432 111111222222 44 444443 36899999999999988
Q ss_pred eeeCC--c------------------------------ceEEEEEccCCCCEEEEeeCCC-------------------c
Q 013475 227 SFREE--L------------------------------AVRVVKFHPENSNLFLSGGSKG-------------------L 255 (442)
Q Consensus 227 ~~~~~--~------------------------------~v~~~~~~~~~~~~l~~~~~dg-------------------~ 255 (442)
.+... . ....+++.+++ .+++.+..++ .
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 77521 0 01257788875 7778887765 3
Q ss_pred EEEEECCCCceEEEeccC--C-------CCEeEEEEeeCCC---EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 256 LRLWDIRTGKVAHEYIQS--L-------GPILDVEFTINGK---QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~--~-------~~i~~~~~~~~~~---~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
|..||.++++.+..+... . .++.......+|+ .++.++. +|.++++|.++++.+.......
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~-------~G~l~~lD~~tG~~l~~~~~~~ 349 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK-------NGFFYVIDRATGELLSAKGIVP 349 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT-------TSEEEEEETTTCCEEEEEESSC
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC-------CCeEEEEECCCCCEeccccccc
Confidence 999999999998877542 1 1222223334665 6788887 9999999999988763322111
Q ss_pred --------------------------------------cceeeeEEecCCCCeeEEEeC---------------------
Q 013475 324 --------------------------------------AYTCPCVRHHPFDPYFVAQSN--------------------- 344 (442)
Q Consensus 324 --------------------------------------~~~~~~~~~~~~~~~l~~~~~--------------------- 344 (442)
...-..++++|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 001123678888777776422
Q ss_pred ------------------------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEec
Q 013475 345 ------------------------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNC 400 (442)
Q Consensus 345 ------------------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~ 400 (442)
++.|..||+.++...+.+.. + .......++..+.++++|+.||.|+.||.
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~---~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V---TIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S---SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C---CCccCccceECCCEEEEECCCCcEEEEEC
Confidence 36789999988876654322 1 11233456668889999999999999999
Q ss_pred CCceeeEeeeccCCc-eeEEEEcCCCCCEEEEeeC
Q 013475 401 RSSELERKIKAYEQA-CIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~~ 434 (442)
++|+.+.+++...+. ..-+.|..+|.+++++.+.
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 999999888754332 2446777888666665543
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.41 E-value=2e-10 Score=105.07 Aligned_cols=257 Identities=9% Similarity=-0.001 Sum_probs=163.1
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceE--
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVR-- 235 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~-- 235 (442)
+..++.++.++.|..+|..++ +.+............... .+..++.++.++.|..+|..+++.+..+.....+.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDG--TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTC--CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 346777888999999998655 444444322221112222 24478888889999999999999988877443332
Q ss_pred ----EEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCC----------EeEEEEeeCCCEEEeccCCCCCcCC
Q 013475 236 ----VVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGP----------ILDVEFTINGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 236 ----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~~~~~~~~ 301 (442)
..... + ..++.+..++.|..+|..+++.+......... +...... .+..++.++.
T Consensus 179 ~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~------- 247 (376)
T 3q7m_A 179 RGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAY------- 247 (376)
T ss_dssp CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECT-------
T ss_pred cCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEec-------
Confidence 22222 2 46777888999999999999887766432110 1111111 2455666665
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL 381 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 381 (442)
++.+..+|..+++.+....... ...+.. ++..+++++.++.+..+|..++...+..... ..........
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~~~---~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~-- 316 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKRELGS---VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL----LHRLLTSPVL-- 316 (376)
T ss_dssp TSCEEEEETTTCCEEEEECCCC---EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT----TTSCCCCCEE--
T ss_pred CcEEEEEECCCCcEEeeccCCC---CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc----CCCcccCCEE--
Confidence 8999999999887665543221 222222 4677888888999999999887655432211 0111222222
Q ss_pred CCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 382 DGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 382 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+..|++++.+|.|+++|..+++.+..+......+.......++ .|+.++.||.|+.||
T Consensus 317 ~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 317 YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETT--EEEEEBTTSCEEEEE
T ss_pred ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECC--EEEEEeCCCEEEEEe
Confidence 35688899999999999999999888776533333322112233 677788899999875
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=3.7e-11 Score=117.94 Aligned_cols=276 Identities=10% Similarity=0.032 Sum_probs=175.7
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCC-----------ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSA-----------AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
..|+.++.++.|..+|..++ +.+..+..... ....+++ ++..|++++.|+.|..+|..+|+.+..
T Consensus 78 g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTG--NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TEEEEECGGGCEEEEETTTT--EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEECCCCeEEEEECCCC--cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 35666677889999998554 55555442211 0112333 456788888999999999999999988
Q ss_pred eeCC------cceEEEEEccCCCCEEEEeeC------CCcEEEEECCCCceEEEeccCCCC-------------------
Q 013475 228 FREE------LAVRVVKFHPENSNLFLSGGS------KGLLRLWDIRTGKVAHEYIQSLGP------------------- 276 (442)
Q Consensus 228 ~~~~------~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------- 276 (442)
+... ..+...-...+ ..+++++. +|.|+.||.++++.+.++......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 8743 12221111112 34455443 689999999999998777542211
Q ss_pred -------------EeEEEEeeCCCEEEeccCCC------------CCcCCCCeEEEEeCCCCcccceeecccc-------
Q 013475 277 -------------ILDVEFTINGKQFVSSSDVS------------GSNMSENSIVVWDVSREVPLSKQVYVEA------- 324 (442)
Q Consensus 277 -------------i~~~~~~~~~~~l~~~~~~~------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~------- 324 (442)
...+.+++++..++.+.... +....-+.|..+|.++++.+........
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 13578888888888776510 0000013599999999987766544221
Q ss_pred -ceeeeEEecCCC---CeeEEEeCCCeEEEeeCCCCcccccceeEeec-----ccccC----------------------
Q 013475 325 -YTCPCVRHHPFD---PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH-----GVSGF---------------------- 373 (442)
Q Consensus 325 -~~~~~~~~~~~~---~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----~~~~~---------------------- 373 (442)
.....+....+| ..++.++.++.++++|..++..+..+..-... ...+.
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 112222233366 67888999999999999988766433210000 00000
Q ss_pred ---cEEEEEccCCCEEEEecC-------------------------------------------CCcEEEEecCCceeeE
Q 013475 374 ---PIKCSFSLDGEKLVSGSS-------------------------------------------DGSIYFYNCRSSELER 407 (442)
Q Consensus 374 ---v~~~~~s~~g~~l~~g~~-------------------------------------------dg~i~iwd~~~~~~~~ 407 (442)
-..++|+|++.++++... .|.|..||+.+++.+.
T Consensus 392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence 014688998888877532 2789999999999888
Q ss_pred eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 408 KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 408 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
++.. ...+.+..+..++ .+++.++.||.+++||
T Consensus 472 ~~~~-~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 472 SVEH-VSPWNGGTLTTAG-NVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEE
T ss_pred ecCC-CCCCcCcceEeCC-CEEEEECCCCcEEEEE
Confidence 8763 4445555566666 5788889999999986
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=2.7e-10 Score=111.86 Aligned_cols=257 Identities=12% Similarity=0.085 Sum_probs=170.6
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccC-C----CceeE-EEeCCCCCEEEEEec------CCcEEEEECCCCcEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFH-S----AAVND-VKWSQQGLFVLSCGY------DCSSRLVDVEKGIET 225 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~----~~v~~-l~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~ 225 (442)
+..|+.++.|+.|..+|..++ +.+..+..+ . ..+.+ ... .+..+++++. ++.|+.||..+|+.+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATG--KEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 456788888999999998655 555555433 1 11211 111 2345555543 689999999999999
Q ss_pred EeeeCCcc---------------------------------eEEEEEccCCCCEEEEeeCCC------------------
Q 013475 226 QSFREELA---------------------------------VRVVKFHPENSNLFLSGGSKG------------------ 254 (442)
Q Consensus 226 ~~~~~~~~---------------------------------v~~~~~~~~~~~~l~~~~~dg------------------ 254 (442)
..+..... ...+++++++ .+++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeee
Confidence 88763111 1246788885 6777666553
Q ss_pred -cEEEEECCCCceEEEeccCC---------CCEeEEEEeeCC---CEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec
Q 013475 255 -LLRLWDIRTGKVAHEYIQSL---------GPILDVEFTING---KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY 321 (442)
Q Consensus 255 -~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~~~~~---~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 321 (442)
.|..+|.++++.+..+.... ....-+....+| ..++.++. +|.|+++|..+++.+.....
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~-------~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK-------NGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT-------TSEEEEEETTTCCEEEEEES
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECC-------CCEEEEEECCCCCEeccccc
Confidence 59999999999987765321 112223344477 67888887 99999999999887655432
Q ss_pred cccc----------------------------------eeeeEEecCCCCeeEEEeC-----------------------
Q 013475 322 VEAY----------------------------------TCPCVRHHPFDPYFVAQSN----------------------- 344 (442)
Q Consensus 322 ~~~~----------------------------------~~~~~~~~~~~~~l~~~~~----------------------- 344 (442)
.... .-..++++|+..++++...
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 2100 0124678888888777543
Q ss_pred --------------------CCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 345 --------------------GNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 345 --------------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
.+.|..||+.++...+.+.. ...+....++.++.++++++.||.+++||..+++
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 17799999988876654331 1223445667788899999999999999999999
Q ss_pred eeEeeeccC-CceeEEEEcCCCCCEEEEe
Q 013475 405 LERKIKAYE-QACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 405 ~~~~~~~~~-~~v~~~~~~p~~~~~l~s~ 432 (442)
.+.++.... ....-+.|..+|..+++..
T Consensus 510 ~lw~~~~~~~~~~~p~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 510 KLWEAPTGTGVVAAPSTYMVDGRQYVSVA 538 (677)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eeeeeeCCCCcccCCEEEEeCCEEEEEEe
Confidence 999887543 2233456677774455543
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=122.10 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=119.1
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-CEe-
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-PIL- 278 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~- 278 (442)
++..+++++.|+.|+.||..+|+.+..+.. ..+.+..+..++ .++++++.||.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999988886 555555555654 6777888999999999999887766643311 010
Q ss_pred EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 279 DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
+..+. ++..+++++. ++.|+.||..+++.+....... ...++|++..+++++.++.|+.||..++..
T Consensus 86 sp~~~-~~~~v~~g~~-------dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKK-------QDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp CSCC------CCCCEE-------EEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred CceEe-cCCEEEEEeC-------CCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 01111 3456667776 8999999999988766554332 234566888999999999999999998876
Q ss_pred cccceeEeecccccCcEEEEEccCC---CEEEEecCCCcEEEEecCCceeeEeeeccCCcee-EEEEcCCC
Q 013475 359 LDKFKRYESHGVSGFPIKCSFSLDG---EKLVSGSSDGSIYFYNCRSSELERKIKAYEQACI-DVAFHPIL 425 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~p~~ 425 (442)
.+.+.... . ....++.+. ..+++++.||.|+.||..+|+.+.++.. ..++. ...++.++
T Consensus 153 ~W~~~~~~-~------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 153 RWNATYFD-Y------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp CCEEEEEE-E------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred EEeEeccc-c------cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence 65543211 1 122333332 5677788899999999999998877764 34443 34555665
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.38 E-value=3e-10 Score=102.53 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=152.7
Q ss_pred Eee--CCCCCEEEEecCCCcEEEEEcccCC--cceeeeec------cC-CCceeEEEeCCCCCEEEEEecC------CcE
Q 013475 152 NWS--PTHAHLLASAGMDQSICIWNVWSRD--QKLARVLN------FH-SAAVNDVKWSQQGLFVLSCGYD------CSS 214 (442)
Q Consensus 152 ~~s--~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~------~h-~~~v~~l~~~~~~~~l~s~~~d------~~v 214 (442)
.++ .+...+++++..+++|.|+|+.+.. .+..+++. .. ...-..+..+|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 7734455567788999999985432 24555552 11 1245677888999 77766655 789
Q ss_pred EEEECCCCcEEEeeeCC----cceEEEEEccCCCCEEEEee-------------------CCCcEEEEECCCCceEEEec
Q 013475 215 RLVDVEKGIETQSFREE----LAVRVVKFHPENSNLFLSGG-------------------SKGLLRLWDIRTGKVAHEYI 271 (442)
Q Consensus 215 ~vwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~ 271 (442)
.++|.++++.+..+... .--..+.|+|++ +.+++.. .+..|.+||+.+++.+.++.
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 99999999999988722 223458889996 6777764 36789999999988888776
Q ss_pred cC-C-CCEeEEEE--eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee--cc-----------------ccceee
Q 013475 272 QS-L-GPILDVEF--TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV--YV-----------------EAYTCP 328 (442)
Q Consensus 272 ~~-~-~~i~~~~~--~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~-----------------~~~~~~ 328 (442)
.. . .....+.| +|+++++.++..... ...+++|.+|....+....... .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSL-KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEET-TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeec-cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 53 1 23455656 999998777663000 0006788776654322100000 00 023467
Q ss_pred eEEecCCCCeeEEEeC-CCeEEEeeCCCCcccccceeEeecc------------cccCcEEEEEccCCCEEEEec
Q 013475 329 CVRHHPFDPYFVAQSN-GNYIAIFSSTPPFRLDKFKRYESHG------------VSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 329 ~~~~~~~~~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~g~~l~~g~ 390 (442)
.+.+++++++|.++.. .+.|.+||+........+....... ..+....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999888765 5799999987443332222222110 112467899999999999888
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.38 E-value=2.9e-10 Score=96.60 Aligned_cols=204 Identities=12% Similarity=0.032 Sum_probs=140.1
Q ss_pred ceeeeeccCCC--ceeEEEeCCCCCEEEEEec--CCcEEEEECCCCcEEEeeeCCc--ceEEEEEccCCCCEEEEeeCCC
Q 013475 181 KLARVLNFHSA--AVNDVKWSQQGLFVLSCGY--DCSSRLVDVEKGIETQSFREEL--AVRVVKFHPENSNLFLSGGSKG 254 (442)
Q Consensus 181 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg 254 (442)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++.+..+.... ....+++. +..++++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4455565 553 3589999998755554443 5899999999999998887333 23345554 446666667789
Q ss_pred cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecC
Q 013475 255 LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHP 334 (442)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (442)
.+.++|..+.+.+.++... .+ ....+++||+.++.+.. ++.|.++|..+.+.+..+.....
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~-~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~---------- 147 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MK-DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYN---------- 147 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SS-SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEET----------
T ss_pred EEEEEECCCCcEEEEEECC-CC-CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCC----------
Confidence 9999999999988888543 11 12345668877776666 88999999988765544321110
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccC-
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYE- 413 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~- 413 (442)
...-..+..+.|. +|..++....++.|.+.|..+++.+..+....
T Consensus 148 ---------------------------------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~ 193 (266)
T 2iwa_A 148 ---------------------------------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNL 193 (266)
T ss_dssp ---------------------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH
T ss_pred ---------------------------------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc
Confidence 0000124566777 67655555568899999999999988886321
Q ss_pred ------------CceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 414 ------------QACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 414 ------------~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
...+.|+|+|++..+++++...+.|.+
T Consensus 194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 356899999998778888877777765
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=7.1e-10 Score=101.36 Aligned_cols=257 Identities=11% Similarity=0.003 Sum_probs=160.8
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccC---------CCcee-EEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFH---------SAAVN-DVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h---------~~~v~-~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
+..++.++.++.|..+|..++ +.+..+... ...+. .+.. ++..+++++.++.|..+|.++++.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 446777788899999998655 444333321 12222 2222 455788888899999999999999887
Q ss_pred eeCCcceEE-EEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCE-----eEEEEeeCCCEEEeccCCCCCcCC
Q 013475 228 FREELAVRV-VKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPI-----LDVEFTINGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 228 ~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~~~~~~~ 301 (442)
+.....+.. .... + ..+++++.++.|..+|.++++.+..+....... ...... +..++.+..
T Consensus 129 ~~~~~~~~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~------- 196 (376)
T 3q7m_A 129 TKVAGEALSRPVVS-D--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD------- 196 (376)
T ss_dssp EECSSCCCSCCEEE-T--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT-------
T ss_pred EeCCCceEcCCEEE-C--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC-------
Confidence 774433221 1222 2 467778889999999999999887765432211 122222 445666766
Q ss_pred CCeEEEEeCCCCcccceeeccccce------eeeEEecC--CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYT------CPCVRHHP--FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
++.|..+|..+++.+.......... +..+...| .+..+++++.++.+..+|..++...+.... ..
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-------~~ 269 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-------GS 269 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-------CC
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-------CC
Confidence 8999999999887765544321100 00011111 256777788899999999988765543221 11
Q ss_pred cEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-CCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 374 PIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-EQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
...+.. ++..|++++.++.|..+|..+++.+...... ...+...... + ..|+.++.+|.|.+||
T Consensus 270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEE
T ss_pred CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEE
Confidence 223333 4668888888999999999999887766522 2223333332 2 3677777888888775
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.36 E-value=1.7e-14 Score=131.33 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=120.9
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCc--ceE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREEL--AVR 235 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~v~ 235 (442)
+..+++++.||.|+.||..++ +.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++.+..+.... .+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 568889999999999998555 56666654 556555566677788888899999999999998776665221 110
Q ss_pred -EEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 236 -VVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 236 -~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
...+. .+ ..+++++.++.|+.||.++|+.+..+..+. ...++|++..+++++. ++.|+.||.++++
T Consensus 85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~-------dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT-------EYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEE-------EEEEECCCSSSSS
T ss_pred cCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec-------CCEEEEEECCCCC
Confidence 01111 22 467788889999999999999887776543 2345668888888887 9999999999988
Q ss_pred ccceeeccccceeeeEEecCCC---CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE-EEEEccCCCEE----
Q 013475 315 PLSKQVYVEAYTCPCVRHHPFD---PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI-KCSFSLDGEKL---- 386 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l---- 386 (442)
.+....... .....+..+. ..+++++.++.++.||..++...+... ....+. ...++.+|...
T Consensus 152 ~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~------~~~pv~~~~~~~~dg~~~v~~~ 222 (369)
T 2hz6_A 152 LRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN------YASPVVAFYVWQREGLRKVMHI 222 (369)
T ss_dssp CCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE------CSSCEEEEEECTTSSCEEECCE
T ss_pred EEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec------CCCceEEEEEecCCceEeccce
Confidence 765544221 2223333332 567788899999999998887654432 112222 23445555432
Q ss_pred EEecCCCcEEEEecCCce
Q 013475 387 VSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 387 ~~g~~dg~i~iwd~~~~~ 404 (442)
+.+ ++.++.+|..+|+
T Consensus 223 ~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 223 NVA--VETLRYLTFMSGE 238 (369)
T ss_dssp EEE--HHHHHHHHHHHHH
T ss_pred eec--ccceeeeehhcCC
Confidence 112 3345666666665
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.36 E-value=1.2e-10 Score=114.66 Aligned_cols=269 Identities=11% Similarity=0.032 Sum_probs=171.6
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCc----------e-eEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAA----------V-NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 226 (442)
+..|+.++.++.|..+|..++ +.+..+..+... + ..+.+ .+..|++++.|+.|..+|.++|+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG--RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCC--ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 345667777889999998655 555554422110 0 11222 35678888899999999999999988
Q ss_pred eeeCC------cceEE-EEEccCCCCEEEEee------CCCcEEEEECCCCceEEEeccCC-------------------
Q 013475 227 SFREE------LAVRV-VKFHPENSNLFLSGG------SKGLLRLWDIRTGKVAHEYIQSL------------------- 274 (442)
Q Consensus 227 ~~~~~------~~v~~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~------------------- 274 (442)
.+... ..+.+ ..+ .+ ..++++. .+|.|+.||.++|+.+.++....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v-~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRV-VN--GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEE-ET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eecCcCCCCCCccccCCcEE-EC--CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 87642 11111 111 13 3344443 36899999999999887764210
Q ss_pred ------------CCEeEEEEeeCCCEEEeccCCCCCcCCCC-------------------eEEEEeCCCCcccceeeccc
Q 013475 275 ------------GPILDVEFTINGKQFVSSSDVSGSNMSEN-------------------SIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 275 ------------~~i~~~~~~~~~~~l~~~~~~~~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~ 323 (442)
.....+.+++++..++.+.. ++ .|..+|.++++.+......+
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~-------~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG-------NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECC-------CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCC-------CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 01125788888888888775 44 49999999998776654421
Q ss_pred c--------ceeeeEEecCCCC---eeEEEeCCCeEEEeeCCCCcccccceeEe----ec-------------------c
Q 013475 324 A--------YTCPCVRHHPFDP---YFVAQSNGNYIAIFSSTPPFRLDKFKRYE----SH-------------------G 369 (442)
Q Consensus 324 ~--------~~~~~~~~~~~~~---~l~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~-------------------~ 369 (442)
. ..........+++ .++.++.++.++++|..++..+....... .. .
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~ 375 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKN 375 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTS
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCC
Confidence 1 1111112222454 78889999999999999887653211000 00 0
Q ss_pred cc-----------cCcEEEEEccCCCEEEEecC---------------------------------------------CC
Q 013475 370 VS-----------GFPIKCSFSLDGEKLVSGSS---------------------------------------------DG 393 (442)
Q Consensus 370 ~~-----------~~v~~~~~s~~g~~l~~g~~---------------------------------------------dg 393 (442)
.. ..-..++|+|+..++++... +|
T Consensus 376 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g 455 (689)
T 1yiq_A 376 GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG 455 (689)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred CCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence 00 00113788998888876521 37
Q ss_pred cEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 394 SIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 394 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.|+.||+.+++.+.++..+. .+..-.+...+ .+++.++.||.|+.||
T Consensus 456 ~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 456 KLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEE
T ss_pred eEEEEECCCCCeEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEE
Confidence 79999999999988887543 33333555555 5888999999999987
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.35 E-value=6.3e-09 Score=90.08 Aligned_cols=254 Identities=8% Similarity=-0.040 Sum_probs=157.9
Q ss_pred CEEEEecCCCcEEEEEcccCCcce---eeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCCCcEEEeee-CCcc
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKL---ARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGIETQSFR-EELA 233 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~-~~~~ 233 (442)
.+|+.+.. +.|+.+++....... ...+......+..++|++++..|+.+. .++.|.+++++.......+. ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555443 478888885442211 112222234678999999766666554 46899999998765444343 2357
Q ss_pred eEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC
Q 013475 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE 313 (442)
Q Consensus 234 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~ 313 (442)
...+++++++..++++....+.|.++++..................+++++++..|..+... ...+.|..+++...
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~----~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN----RDNPKIETSHMDGT 156 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC----SSSCEEEEEETTSC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC----CCCcEEEEEecCCC
Confidence 89999999765666676777899999986433222222223467899999976655544430 00368888887643
Q ss_pred cccceeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC
Q 013475 314 VPLSKQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD 392 (442)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 392 (442)
. ..............+++++++..|.+ ....+.|.+++........ ... ....+..++.. ++.++++...+
T Consensus 157 ~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~---~~~---~~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 157 N-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK---VLE---GLQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp C-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE---EEE---CCCSEEEEEEE-TTEEEEEETTT
T ss_pred C-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE---Eec---CCCCceEEEEe-CCEEEEEECCC
Confidence 2 22222122235678999998765554 5566899999987643221 111 12334566654 34444454567
Q ss_pred CcEEEEecCCceeeEeeeccC-CceeEEEEcCCC
Q 013475 393 GSIYFYNCRSSELERKIKAYE-QACIDVAFHPIL 425 (442)
Q Consensus 393 g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~ 425 (442)
+.|.++|..+++.+..+.... ....++++.|++
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 899999999999888886433 247788888876
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.34 E-value=8.3e-11 Score=106.03 Aligned_cols=223 Identities=11% Similarity=0.028 Sum_probs=140.8
Q ss_pred CceeEEEeCCCCCEEEEEec--CCcEEEEECCCCcEEEeee--------CCcceEEEEEccCCCCEEEEeeC-----CCc
Q 013475 191 AAVNDVKWSQQGLFVLSCGY--DCSSRLVDVEKGIETQSFR--------EELAVRVVKFHPENSNLFLSGGS-----KGL 255 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 255 (442)
..+..++++++|+++++... ++.++||.+.+++. ..+. +...+..+++++++ +++++... ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCe
Confidence 67899999999998888642 34356666655543 3221 34578999999986 66655433 578
Q ss_pred EEEEECCCCceEEEeccC------CCCEeEEEEeeCC-CEEEecc---CCCCCcCCCCeEEEEeCCCCcccceeeccccc
Q 013475 256 LRLWDIRTGKVAHEYIQS------LGPILDVEFTING-KQFVSSS---DVSGSNMSENSIVVWDVSREVPLSKQVYVEAY 325 (442)
Q Consensus 256 i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~---~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 325 (442)
|.+||+.+++.+..+... ...+..+++++++ ..+++.. . ++.|.+||+.+++.......+...
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~-------~~~i~v~d~~~g~~~r~~~~~~~~ 167 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD-------KAALIRVDLQTGLAARVLQGYPGI 167 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG-------GCEEEEEETTTCCEEEECTTCTTT
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC-------CCeEEEEECCCCCEEEEecCCCcc
Confidence 999999999877666432 2356889999764 4445544 4 789999999876543322110010
Q ss_pred eeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC-cEEEEecC---
Q 013475 326 TCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG-SIYFYNCR--- 401 (442)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~iwd~~--- 401 (442)
......+..++..+.....++.+..|. ..+..++|+|+|++|+++..++ .|+.++..
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~ 228 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS 228 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT
T ss_pred cccccceeECCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc
Confidence 000123334455555555555554432 1246799999999888887665 45555432
Q ss_pred Cc-----eeeE--eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 402 SS-----ELER--KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 402 ~~-----~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+ +... ...++......++++++| .++++...++.|.+||
T Consensus 229 ~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 229 NLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVIT 275 (343)
T ss_dssp CTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEE
T ss_pred CCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEE
Confidence 11 1111 112334456789999998 7888888889999986
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.33 E-value=7.2e-10 Score=92.89 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=133.7
Q ss_pred ceeeeeccCCCc--eeEEEeCCCCCEEEEEecCC--cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 181 KLARVLNFHSAA--VNDVKWSQQGLFVLSCGYDC--SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 181 ~~~~~~~~h~~~--v~~l~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
+.+.++. |... ...|.|+ ++.++.+.+.+| .|+++|+++++.+..+..........+.+++..+++..-.++.+
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 4455665 5544 4789998 677777777765 89999999999999988555554433333454666666678999
Q ss_pred EEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC
Q 013475 257 RLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (442)
.+||..+.+.+.++..... ...+.++++.|+.+.. ++.|.++|..+.+.+..+......
T Consensus 110 ~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g----------- 168 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHG----------- 168 (262)
T ss_dssp EEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETT-----------
T ss_pred EEEECccCcEEEEEECCCC---ceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCC-----------
Confidence 9999999999988875432 2334467777777766 788999999887655443221100
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc----
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY---- 412 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---- 412 (442)
..-..+..+.|. +|+..+..-.++.|.+.|..+++.+..+...
T Consensus 169 --------------------------------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~ 215 (262)
T 3nol_A 169 --------------------------------EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILA 215 (262)
T ss_dssp --------------------------------EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGG
T ss_pred --------------------------------ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcc
Confidence 000123345555 6766655556889999999999988877632
Q ss_pred --------CCceeEEEEcCCCCCEEEEe
Q 013475 413 --------EQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 413 --------~~~v~~~~~~p~~~~~l~s~ 432 (442)
....+.|+|+|++..++++|
T Consensus 216 ~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 216 EAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp GSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 13558999999985566665
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.30 E-value=5.8e-10 Score=104.32 Aligned_cols=228 Identities=13% Similarity=0.069 Sum_probs=153.1
Q ss_pred CCCEEEEEec-CCcEEEEECCCCcEEEeee--CCcceEEEEE-c-cCCCCEEEEee------------------CCCcEE
Q 013475 201 QGLFVLSCGY-DCSSRLVDVEKGIETQSFR--EELAVRVVKF-H-PENSNLFLSGG------------------SKGLLR 257 (442)
Q Consensus 201 ~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~l~~~~------------------~dg~i~ 257 (442)
||++|+.+.. ++.|.+.|+.+.++...+. ....+..+++ . |++ .++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEE
Confidence 7888887765 5569999999999888554 4567889998 4 886 5666653 345799
Q ss_pred EEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc-------------------------------CCCCeEE
Q 013475 258 LWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN-------------------------------MSENSIV 306 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~-------------------------------~~d~~i~ 306 (442)
++|..+.+.+.++.-.. ....+.++++|+++++++...... ..-+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999998888876433 346788999999999887521000 0013477
Q ss_pred EEeCCC--Ccc-cceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCccc------ccceeEeecccccCcEE
Q 013475 307 VWDVSR--EVP-LSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRL------DKFKRYESHGVSGFPIK 376 (442)
Q Consensus 307 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~------~~~~~~~~~~~~~~v~~ 376 (442)
+.|.++ ++. +..+. ......++.++|||+++++++ .++.|.++|..+.... .................
T Consensus 258 VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 788776 332 22222 223567799999999887755 6789999999854210 00011112223345788
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCC----------ceeeEeeeccCCce-----eEEEEcCCCCCEEEEee
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRS----------SELERKIKAYEQAC-----IDVAFHPILPNIIGSCS 433 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~~p~~~~~l~s~~ 433 (442)
++|+++|...++.--|+.|.+||+.+ .+.+.++..|..+- .++.++||| ++|++..
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~N 406 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLS 406 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEE
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcC
Confidence 99999994445666799999999987 45666776654321 234568998 6777664
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.28 E-value=8.7e-10 Score=98.69 Aligned_cols=269 Identities=9% Similarity=0.009 Sum_probs=167.3
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
....+..+...+.++....+ +. |..++.+ |..+|. + .+....+...........+. +..|..++.++.|..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~-~--g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~ 121 (330)
T 3hxj_A 51 VKWFFKSGEIIECRPSIGKD-GT-IYFGSDK--VYAINP-D--GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYA 121 (330)
T ss_dssp EEESSCGGGEEEECCEETTT-TE-ECCSSCE--EEEECC-C--GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEE
T ss_pred EEEEEecCCCcccceEEecC-Cc-EEEecCc--EEEECC-C--CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEE
Confidence 33333344455677777766 55 5555544 777774 2 23333333222223333333 456777888999999
Q ss_pred EECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 217 VDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 217 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
+|.. ++....+. ....+.++...+++ . ++.++.++.|..||.. ++.+..+......+.++....++..++..
T Consensus 122 ~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--- 194 (330)
T 3hxj_A 122 INTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--- 194 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---
T ss_pred EcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---
Confidence 9998 77766665 34445566666664 4 5667778999999998 87777766555667777777777766554
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
+.|..+| .+++....... ....+.++...+++. +.+++.++.+..++... ..... +.. ....+.
T Consensus 195 -------~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~~---~~~--~~~~~~ 258 (330)
T 3hxj_A 195 -------DKVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKWR---FKT--GKRIES 258 (330)
T ss_dssp -------SSEEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEEE---EEC--SSCCCS
T ss_pred -------CEEEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeEE---eeC--CCCccc
Confidence 3678888 55544433322 224566777777764 55566777888887533 22221 111 112233
Q ss_pred EEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 376 KCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.+.+..+| .|.+++.+|.|..+|. +++.+..+......+.++....++ .|..++.+|.+++.
T Consensus 259 ~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 259 SPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG--TIYFGTRNGKFYAL 320 (330)
T ss_dssp CCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC--CEEEECTTSCEEEE
T ss_pred cceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC--EEEEEcCCCeEEEE
Confidence 45555555 5667778888999995 677776666556667788887887 45567789988764
No 239
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=3.4e-09 Score=94.68 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=121.4
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc--CCCceeEEEeCCCCCEEEEEec------CCcEEE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF--HSAAVNDVKWSQQGLFVLSCGY------DCSSRL 216 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~------d~~v~v 216 (442)
...|.+++|+++ ++++++. .+ .|.+||..++....+..... ....+++++++++|+++++... .+.|..
T Consensus 89 ~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCC-CeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 457999999999 7776654 33 59999985553322222111 1246889999999987665542 245555
Q ss_pred EECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC--CC-c-----eEEEeccCCCCEeEEEEeeCCCE
Q 013475 217 VDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR--TG-K-----VAHEYIQSLGPILDVEFTINGKQ 288 (442)
Q Consensus 217 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~~ 288 (442)
++ +++.............++|++++..++++...++.|.+||+. ++ + ....+.........+.+.++|++
T Consensus 166 ~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 166 VA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred Ee--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence 55 454443333344578899999974455666667899999986 55 3 12233333456788999999988
Q ss_pred EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEec-CCCCeeEEEeC
Q 013475 289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHH-PFDPYFVAQSN 344 (442)
Q Consensus 289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 344 (442)
+++... ++.|.+||. +++.+..+.. ....+.+++|. +++..|++++.
T Consensus 244 wva~~~-------~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWG-------EGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEET-------TTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEeC-------CCEEEEECC-CCCEEEEEEC-CCCCcEEEEEecCCCCEEEEEec
Confidence 777765 789999998 4444444332 23457888997 78776655443
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=4.2e-10 Score=105.28 Aligned_cols=237 Identities=9% Similarity=-0.007 Sum_probs=157.1
Q ss_pred CCCCEEEEe-cCCCcEEEEEcccCCcceee--eeccCCCceeEEEe-C-CCCCEEEEEe------------------cCC
Q 013475 156 THAHLLASA-GMDQSICIWNVWSRDQKLAR--VLNFHSAAVNDVKW-S-QQGLFVLSCG------------------YDC 212 (442)
Q Consensus 156 ~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~-~-~~~~~l~s~~------------------~d~ 212 (442)
| |++|+.. ..++.|.+.|+.+. ++.. .+. ....+..+++ + |+++++++++ .++
T Consensus 100 D-G~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 D-GRFLFMNDKANTRVARVRCDVM--KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp E-EEEEEEEETTTTEEEEEETTTT--EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred C-CCEEEEEcCCCCEEEEEECCCc--eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 6 5666554 45667999999554 5444 443 3356888898 5 8999999885 246
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC--------------------------------------
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG-------------------------------------- 254 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------------------------- 254 (442)
.+.++|.++.+...++...+....++++|+| .++++.+.+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred eEEEEECCCCeEEEEEEeCCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 8999999999999988854567888999997 5555554332
Q ss_pred cEEEEECCC--Cce-EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc----------ceeec
Q 013475 255 LLRLWDIRT--GKV-AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL----------SKQVY 321 (442)
Q Consensus 255 ~i~iwd~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~----------~~~~~ 321 (442)
.|.+.|.++ ++. +..+... ....++.++|||++++++.. .+.+|.++|+.+.+.. .....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred cEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCC------CCCeEEEEECcccccccccccCcccceEEEc
Confidence 467777776 434 4444332 34578999999999888775 3899999999864311 11122
Q ss_pred cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCc-------ccccceeEeecc---cccCcEEEEEccCCCEEEEecC
Q 013475 322 VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF-------RLDKFKRYESHG---VSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
.-......++|+++|..+++...++.|.+|++.... ....+.++..+- |......+.+++||++|++...
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 334467889999999656668889999999987621 112223332221 1111123467899999998753
Q ss_pred ---CCc----------EEEEecCCce
Q 013475 392 ---DGS----------IYFYNCRSSE 404 (442)
Q Consensus 392 ---dg~----------i~iwd~~~~~ 404 (442)
|.. -.++|+..++
T Consensus 408 ~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 408 FSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCccccccCCCCCCCcceEEEcCCCc
Confidence 432 1889986544
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.23 E-value=3.1e-10 Score=101.64 Aligned_cols=258 Identities=11% Similarity=0.057 Sum_probs=159.1
Q ss_pred EEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEee
Q 013475 149 NSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF 228 (442)
Q Consensus 149 ~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 228 (442)
.++.+..+ +. |..++.++.|..|| .++ +....+......+.++....++. |..++.+ |..+|. +++.+..+
T Consensus 23 ~~~~~d~~-g~-l~v~t~~~~l~~~d-~~g--~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 23 SSPILAKN-GT-IYLGSSNKNLYAIN-TDG--SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCCEECTT-SC-EECSSTTTTTEEEC-TTS--CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred cCceEccC-Ce-EEEEcCCCEEEEEC-CCC--cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence 34445455 54 66777788899999 544 34444443445567777777765 4444434 888886 56555444
Q ss_pred eCCc-ceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEE
Q 013475 229 REEL-AVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVV 307 (442)
Q Consensus 229 ~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~i 307 (442)
.... ......+. + ..+..++.++.|..+|.. ++....+......+.++...+++..++ ++. ++.|..
T Consensus 94 ~~~~~~~~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~-------~~~l~~ 161 (330)
T 3hxj_A 94 DTKKAIVSDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSN-------DNYLYA 161 (330)
T ss_dssp CC-----CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECT-------TSEEEE
T ss_pred ECCCCcccCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcC-------CCEEEE
Confidence 4222 12223333 3 456778888999999988 777766665555566777776777555 554 799999
Q ss_pred EeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEE
Q 013475 308 WDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLV 387 (442)
Q Consensus 308 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 387 (442)
||.. ++....... ....+.++....++..++.. +.+..+| .++....... .....+.++...++|. |.
T Consensus 162 ~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~-----~~~~~~~~~~~~~~g~-l~ 229 (330)
T 3hxj_A 162 INPD-GTEKWRFKT-NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY-----AGYWTVTRPAISEDGT-IY 229 (330)
T ss_dssp ECTT-SCEEEEEEC-SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC-----CSSCCCSCCEECTTSC-EE
T ss_pred ECCC-CCEeEEEec-CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc-----cCCcceeceEECCCCe-EE
Confidence 9998 655444332 23345666676777655444 8888898 4443332211 1224466778888875 45
Q ss_pred EecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 388 SGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 388 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+++.++.|..+|. +++.+..+......+..+.+..++ .|..++.+|.|..+|
T Consensus 230 v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 230 VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEEC
T ss_pred EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEEC
Confidence 5566778888884 566666665544445566666665 456666777777765
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.23 E-value=3e-09 Score=89.09 Aligned_cols=194 Identities=10% Similarity=0.044 Sum_probs=134.4
Q ss_pred cEEEeeeCCcc--eEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCC-CEeEEEEeeCCCEEEeccCCCCCc
Q 013475 223 IETQSFREELA--VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLG-PILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 223 ~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
+.+.++.|... ...+.|+. ..++++.+.+|.|+++|+.+++.+..+ .... .-..+.+.. ++.++..-.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~----- 114 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWT----- 114 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESS-----
T ss_pred EEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEcc-----
Confidence 45566665443 47888873 478888899999999999999988777 3322 123355432 233333334
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
++.+.+||..+.+.+.++..... ...+.++++.|+++..++.|.++|..+......+........-..+..+.|
T Consensus 115 --~~~v~V~D~~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 115 --EGLLFTWSGMPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp --SCEEEEEETTTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred --CCEEEEEECCcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 89999999999988877766432 233335678888888899999999988766554443332222234566777
Q ss_pred ccCCCEEEEecCCCcEEEEecCCceeeEeeecc-------------CCceeEEEEcCCCCCEEEEe
Q 013475 380 SLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-------------EQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 380 s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~s~ 432 (442)
. +|+.++..-.++.|.+.|..+++.+..+... ..-.+.|+|+|++..+++||
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6 7766666556889999999999988877632 13568999999886777776
No 243
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.21 E-value=1.1e-08 Score=84.92 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=131.3
Q ss_pred ceeeeeccCCC--ceeEEEeCCCCCEEEEEecC--CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcE
Q 013475 181 KLARVLNFHSA--AVNDVKWSQQGLFVLSCGYD--CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLL 256 (442)
Q Consensus 181 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 256 (442)
+.+..+. |.. -...+.|+. +.++.+.+.+ +.|+++|+.+++.+..+..............+..++...-.++.+
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 4455554 553 466899986 5556666654 489999999999999888555444333333344666677778999
Q ss_pred EEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCC
Q 013475 257 RLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFD 336 (442)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (442)
.+||..+.+.+.++...... ..+ .++++.|+.+.. ++.|.++|..+.+.+.++......
T Consensus 88 ~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g----------- 146 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGG----------- 146 (243)
T ss_dssp EEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETT-----------
T ss_pred EEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCC-----------
Confidence 99999999999888754332 333 456776666666 889999999887655443221100
Q ss_pred CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc----
Q 013475 337 PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY---- 412 (442)
Q Consensus 337 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---- 412 (442)
..-..+..+.+. +|+.++..-.+..|.+.|..+++.+..+...
T Consensus 147 --------------------------------~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~ 193 (243)
T 3mbr_X 147 --------------------------------RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVP 193 (243)
T ss_dssp --------------------------------EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGST
T ss_pred --------------------------------cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcc
Confidence 000123344544 6666655556778999999999988877622
Q ss_pred ---------CCceeEEEEcCCCCCEEEEe
Q 013475 413 ---------EQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 413 ---------~~~v~~~~~~p~~~~~l~s~ 432 (442)
..-.++|+|+|++.++++||
T Consensus 194 ~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 194 DADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 13568999999886666665
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.17 E-value=1.3e-08 Score=86.42 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=139.8
Q ss_pred CCcceeccccccc--ceEEEEeeCCCCCEEEEecC--CCcEEEEEcccCCcceeeeecc-CCCceeEEEeCCCCCEEEEE
Q 013475 134 PGRLSTALCHHTK--AVNSINWSPTHAHLLASAGM--DQSICIWNVWSRDQKLARVLNF-HSAAVNDVKWSQQGLFVLSC 208 (442)
Q Consensus 134 ~~~~~~~l~~h~~--~V~~~~~s~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~ 208 (442)
..+.+.++. |.. ....+.|+++ +.++++.+. ++.|+++|+.++ +.+..+.- .......+++. +..|+.+
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred CceEEEEEE-CCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEE
Confidence 345566663 443 3579999998 665555443 579999999665 44444431 11222345554 4455554
Q ss_pred e-cCCcEEEEECCCCcEEEeeeCC-cceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-----CCEeEEE
Q 013475 209 G-YDCSSRLVDVEKGIETQSFREE-LAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-----GPILDVE 281 (442)
Q Consensus 209 ~-~d~~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~ 281 (442)
. .++.+.++|..+.+.+..+... .. ...++++|..++++ ..++.|.++|..+.+.+..+.... ..++.+.
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 4 5889999999999999998754 32 23455677566555 467899999999988877775321 2467888
Q ss_pred EeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc------------cceeeeEEecCCCCeeEE-EeCCCeE
Q 013475 282 FTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE------------AYTCPCVRHHPFDPYFVA-QSNGNYI 348 (442)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~-~~~~~~i 348 (442)
|. +|..++.... ++.|.+.|..+++.+..+.... ......++++++++.+++ +...+.+
T Consensus 159 ~~-dg~lyvn~~~-------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 159 YI-NGEVWANIWQ-------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp EE-TTEEEEEETT-------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred EE-CCEEEEecCC-------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 88 7766666655 8999999999998877765431 124578999999876555 5577888
Q ss_pred EEeeCCC
Q 013475 349 AIFSSTP 355 (442)
Q Consensus 349 ~i~~~~~ 355 (442)
+..++..
T Consensus 231 ~~i~l~~ 237 (266)
T 2iwa_A 231 FEIKLHL 237 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8887654
No 245
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.15 E-value=2.2e-07 Score=82.02 Aligned_cols=240 Identities=9% Similarity=0.040 Sum_probs=145.9
Q ss_pred CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC--
Q 013475 135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC-- 212 (442)
Q Consensus 135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-- 212 (442)
.+.+..|... .....++|+++ ++++++-..++.|..||... .....+. ....+..+++.++++++++.....
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g---~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDG---NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTC---CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCC---ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcc
Confidence 4455555433 56789999998 88777776789999998643 2222332 235688999999998666544322
Q ss_pred cEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEec---------cCCCCEeEE
Q 013475 213 SSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYI---------QSLGPILDV 280 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~i~~~ 280 (442)
.|..+|..+++...... .......++..+. ...+++...++.|+++|...++. +.... ......+.+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 46677877777554333 2233455555554 34555555688999999876431 21110 111234555
Q ss_pred EEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC-CcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 281 EFTINGKQFVSSSDVSGSNMSENSIVVWDVSR-EVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
+++++.|+.+.. ..+.|..|++.. +..-.............+++.++|.++++....+.|.+++.......
T Consensus 175 --s~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~ 246 (306)
T 2p4o_A 175 --KRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI 246 (306)
T ss_dssp --EEETTEEEEEET------TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE
T ss_pred --CcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEE
Confidence 788876655443 178999999875 22111111111134677899999988888777889999997632210
Q ss_pred ccceeEeecccccCcEEEEEc---cCCCEEEEecCCC
Q 013475 360 DKFKRYESHGVSGFPIKCSFS---LDGEKLVSGSSDG 393 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~dg 393 (442)
+. ........+++++|. ++++.|++.+..+
T Consensus 247 --~~--~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 --IA--QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp --EE--CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred --Ee--ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 00 011112457899998 8887777665543
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.11 E-value=4.9e-07 Score=79.79 Aligned_cols=237 Identities=9% Similarity=0.001 Sum_probs=143.7
Q ss_pred ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCC-C-cEEE
Q 013475 181 KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK-G-LLRL 258 (442)
Q Consensus 181 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-~i~i 258 (442)
+.+..+.. ......++|+++++++++-..++.|..||.+. +....+.....+..+++.++| +++++.... + .|..
T Consensus 23 ~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEE
T ss_pred eEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC-cEEEEeccCCcceEEE
Confidence 33444432 25677899999988666666788999999875 444445556678999999997 565555432 2 4777
Q ss_pred EECCCCceEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc-ccce--------eeccccceee
Q 013475 259 WDIRTGKVAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV-PLSK--------QVYVEAYTCP 328 (442)
Q Consensus 259 wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~--------~~~~~~~~~~ 328 (442)
+|..+++....... .......++..+++..+++-.. ++.|.++|...+. .+.. ..........
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~-------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC-------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 78777765332221 1223345555555555555544 7889999986532 1110 0001111223
Q ss_pred eEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceee-
Q 013475 329 CVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELE- 406 (442)
Q Consensus 329 ~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~- 406 (442)
.+ +++++++.+ -...+.|..|+............+... .....++++++|+++++....+.|.++|.. ++..
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence 34 777765555 556789999998752222111222111 345678999999988887778899999975 6542
Q ss_pred -EeeeccCCceeEEEEc---CCCCCEEEEee
Q 013475 407 -RKIKAYEQACIDVAFH---PILPNIIGSCS 433 (442)
Q Consensus 407 -~~~~~~~~~v~~~~~~---p~~~~~l~s~~ 433 (442)
..+.......++++|. +++..++++..
T Consensus 247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EeecccccCCceEEEEecccCCCCEEEEECC
Confidence 2333333568999998 78744555543
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.09 E-value=1.7e-07 Score=81.03 Aligned_cols=224 Identities=8% Similarity=0.003 Sum_probs=136.5
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~ 223 (442)
...+..++|++++++++++-..++.|.+++.... .....+.........+++.+++..|+.+. ..+.|.+++++...
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 3467899999974666666667789999998543 22233332335678999999765555554 46789999987544
Q ss_pred EEEeee-CCcceEEEEEccCCCCEEEEeeC--CCcEEEEECCCCceEEEe-ccCCCCEeEEEEeeCCCEEEeccCCCCCc
Q 013475 224 ETQSFR-EELAVRVVKFHPENSNLFLSGGS--KGLLRLWDIRTGKVAHEY-IQSLGPILDVEFTINGKQFVSSSDVSGSN 299 (442)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 299 (442)
...... .......+++++++..++++... .+.|..+++... ....+ .........+++++++..|..+..
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~----- 186 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDA----- 186 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEET-----
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEEC-----
Confidence 333333 23567899999975455555443 468888887543 22222 223346788999998766554443
Q ss_pred CCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEE
Q 013475 300 MSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 300 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
..+.|.++|+....... ... .......++.. .+..+++...++.|..++..++.....+.. .....+..+++
T Consensus 187 -~~~~I~~~~~~g~~~~~-~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~----g~~~~p~gi~~ 258 (267)
T 1npe_A 187 -GTHRAECLNPAQPGRRK-VLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP----HKQTRLYGITI 258 (267)
T ss_dssp -TTTEEEEEETTEEEEEE-EEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC----SSCCCCCCEEE
T ss_pred -CCCEEEEEecCCCceEE-Eec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc----ccccccceeee
Confidence 17899999997543222 111 11223445554 344444455668999999887654422221 11112556777
Q ss_pred ccCCC
Q 013475 380 SLDGE 384 (442)
Q Consensus 380 s~~g~ 384 (442)
.|++.
T Consensus 259 ~~~~~ 263 (267)
T 1npe_A 259 ALSQC 263 (267)
T ss_dssp ECSCC
T ss_pred cCccC
Confidence 77653
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=2.1e-08 Score=98.31 Aligned_cols=268 Identities=11% Similarity=0.041 Sum_probs=165.4
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCCc----------e-eEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAA----------V-NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
..|+.++.++.|..+|..++ +.+..+...... + ..+.+ .+..+++++.|+.|..+|..+|+.+..
T Consensus 67 g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEECCCCeEEEEECCCC--hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 35666667888988898555 444444322110 0 11222 345788888899999999999999988
Q ss_pred eeCC-----cceEE-EEEccCCCCEEEEeeC------CCcEEEEECCCCceEEEeccCC---C-----------------
Q 013475 228 FREE-----LAVRV-VKFHPENSNLFLSGGS------KGLLRLWDIRTGKVAHEYIQSL---G----------------- 275 (442)
Q Consensus 228 ~~~~-----~~v~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~---~----------------- 275 (442)
+... ..+.. ..+. + ..++++.. +|.|+.+|.++++.+.++.... .
T Consensus 143 ~~~~~~~~~~~~~~~P~v~-~--~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVV-K--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EECSCTTSSCBCCSCCEEE-T--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eccCCCCCcceecCCCEEE-C--CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 7632 11111 1111 2 34455433 5899999999999987774310 0
Q ss_pred -----------CEeEEEEeeCCCEEEeccCCCCCcCCCC-------------------eEEEEeCCCCcccceeeccc-c
Q 013475 276 -----------PILDVEFTINGKQFVSSSDVSGSNMSEN-------------------SIVVWDVSREVPLSKQVYVE-A 324 (442)
Q Consensus 276 -----------~i~~~~~~~~~~~l~~~~~~~~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~-~ 324 (442)
....+++.+++..++.+.. ++ .|..+|.++++.+......+ .
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~-------~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~ 292 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTG-------NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD 292 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECC-------CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCC-------CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc
Confidence 1124678887778877765 44 49999999998776655431 1
Q ss_pred -------ceeeeEEecCCCC---eeEEEeCCCeEEEeeCCCCccccccee--------Ee--------ecc----cc---
Q 013475 325 -------YTCPCVRHHPFDP---YFVAQSNGNYIAIFSSTPPFRLDKFKR--------YE--------SHG----VS--- 371 (442)
Q Consensus 325 -------~~~~~~~~~~~~~---~l~~~~~~~~i~i~~~~~~~~~~~~~~--------~~--------~~~----~~--- 371 (442)
.......+..+++ .++.++.++.++++|..++..+..... +. ... ..
T Consensus 293 ~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 372 (668)
T 1kv9_A 293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV 372 (668)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeE
Confidence 1111122223554 688899999999999988876522110 00 000 00
Q ss_pred --------cCcEEEEEccCCCEEEEe------------------------------------cCCCcEEEEecCCceeeE
Q 013475 372 --------GFPIKCSFSLDGEKLVSG------------------------------------SSDGSIYFYNCRSSELER 407 (442)
Q Consensus 372 --------~~v~~~~~s~~g~~l~~g------------------------------------~~dg~i~iwd~~~~~~~~ 407 (442)
..-..++++|+..++++. ..+|.|..||+.+++.+.
T Consensus 373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W 452 (668)
T 1kv9_A 373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW 452 (668)
T ss_dssp ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence 000126788877666541 134889999999999887
Q ss_pred eeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 408 KIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 408 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+...+. ......+...+ .+++.++.||.|++||
T Consensus 453 ~~~~~~-~~~~~~~~t~g-g~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 453 KVPYPT-HWNGGTLSTAG-NLVFQGTAAGQMHAYS 485 (668)
T ss_dssp EEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEE
T ss_pred EccCCC-CCcCceeEeCC-CEEEEECCcccchhhh
Confidence 776433 33333344445 4888889999999986
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.08 E-value=1.4e-07 Score=90.65 Aligned_cols=257 Identities=12% Similarity=0.022 Sum_probs=156.0
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeec--cCCCceeEEEeCC--CCCEEEEEec------CCcEEEEECCCCcEEEe
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLN--FHSAAVNDVKWSQ--QGLFVLSCGY------DCSSRLVDVEKGIETQS 227 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~--~~~~l~s~~~------d~~v~vwd~~~~~~~~~ 227 (442)
+..++.++.|+.|..+|..++ +.+.... .+... ..+.-+| .+..+++++. ++.|..+|..+|+.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--KINWEVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCC--CEEEEecCCCCCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 346777888999999998665 4443332 21110 0111112 1335565554 78999999999999988
Q ss_pred eeCCcce---------------------------------------EEEEEccCCCCEEEEeeCC---------------
Q 013475 228 FREELAV---------------------------------------RVVKFHPENSNLFLSGGSK--------------- 253 (442)
Q Consensus 228 ~~~~~~v---------------------------------------~~~~~~~~~~~~l~~~~~d--------------- 253 (442)
+...... ..+++.++. .+++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCcee
Confidence 7632211 124566654 455555432
Q ss_pred -CcEEEEECCCCceEEEeccCC----------CCEeEEEEeeCCC---EEEeccCCCCCcCCCCeEEEEeCCCCccccee
Q 013475 254 -GLLRLWDIRTGKVAHEYIQSL----------GPILDVEFTINGK---QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ 319 (442)
Q Consensus 254 -g~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~~~~~~---~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 319 (442)
+.|..+|.++++.+..+.... .++. +....+|+ .++.++. +|.+.++|..+++.+...
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~-------~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDR-------NGILYTLNRENGNLIVAE 342 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECT-------TSEEEEEETTTCCEEEEE
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCC-------CcEEEEEECCCCCEEeee
Confidence 359999999999887775321 2221 22234674 5666776 899999999998876554
Q ss_pred ecccc------------cee--------------------------eeEEecCCCCeeEEEe------------------
Q 013475 320 VYVEA------------YTC--------------------------PCVRHHPFDPYFVAQS------------------ 343 (442)
Q Consensus 320 ~~~~~------------~~~--------------------------~~~~~~~~~~~l~~~~------------------ 343 (442)
..... ..+ ..++++|+..++++..
T Consensus 343 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 422 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ 422 (571)
T ss_dssp ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence 33210 000 2356777777666643
Q ss_pred -------------------CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCce
Q 013475 344 -------------------NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSE 404 (442)
Q Consensus 344 -------------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~ 404 (442)
.++.|..||..++...+.+... ..+....+...+..+++++.||.|+.||.++++
T Consensus 423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC------CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 3478889998887665543221 112222333456788889999999999999999
Q ss_pred eeEeeeccCCc-eeEEEEcCCCCCEEEEe
Q 013475 405 LERKIKAYEQA-CIDVAFHPILPNIIGSC 432 (442)
Q Consensus 405 ~~~~~~~~~~~-v~~~~~~p~~~~~l~s~ 432 (442)
.+.+++..... -.-+.+..++..++++.
T Consensus 497 ~lw~~~~~~~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 497 ELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence 99888753221 12234556763344443
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.08 E-value=2.5e-08 Score=83.58 Aligned_cols=196 Identities=9% Similarity=0.003 Sum_probs=132.5
Q ss_pred ceeeeeccCCC--ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEE
Q 013475 181 KLARVLNFHSA--AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRL 258 (442)
Q Consensus 181 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 258 (442)
+.+.++. |.. -...|.|+ ++.++.+.+.+|.|+++|+++++.+..+ ............++..+++..-.++.+.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence 3445554 543 34788887 4567777778889999999999988887 55554443233345567777777899999
Q ss_pred EECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc-c---eeeeEEecC
Q 013475 259 WDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA-Y---TCPCVRHHP 334 (442)
Q Consensus 259 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~~~~ 334 (442)
||..+.+.+.++...... ..++ ++++.|+.+.. ++.|.++|..+.+.+..+..... . .+..+.+.
T Consensus 121 ~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp EETTTTEEEEEEECSSCC-CCEE--EETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence 999999999888754322 3344 56788777776 89999999999887776655332 1 23445665
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCcccccceeEe--------ecccccCcEEEEEccCCCEEEEec
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE--------SHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
+|..++....++.|.+.|..++.....+..-. ..........++|+|+++.|++.+
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 67666556578899999999887654333210 111223567899999765554443
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=1.3e-07 Score=92.81 Aligned_cols=260 Identities=13% Similarity=0.090 Sum_probs=161.6
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCC-CceeEEEeCC--CCCEEEEEec------CCcEEEEECCCCcEEEee
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHS-AAVNDVKWSQ--QGLFVLSCGY------DCSSRLVDVEKGIETQSF 228 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~--~~~~l~s~~~------d~~v~vwd~~~~~~~~~~ 228 (442)
+..++.++.|+.|..+|..++ +.+..+.... .....+...| .+..++++.. ++.|..+|.++|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTG--KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTC--CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 346777888999999998665 4444443211 0001111112 1334555543 589999999999999887
Q ss_pred eCC--cc------------------------------eEEEEEccCCCCEEEEeeCCC-------------------cEE
Q 013475 229 REE--LA------------------------------VRVVKFHPENSNLFLSGGSKG-------------------LLR 257 (442)
Q Consensus 229 ~~~--~~------------------------------v~~~~~~~~~~~~l~~~~~dg-------------------~i~ 257 (442)
... .. ...+++.+++ .+++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 621 00 1136788774 6777776665 399
Q ss_pred EEECCCCceEEEeccC--C-------CCEeEEEEeeCCC---EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc--
Q 013475 258 LWDIRTGKVAHEYIQS--L-------GPILDVEFTINGK---QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-- 323 (442)
Q Consensus 258 iwd~~~~~~~~~~~~~--~-------~~i~~~~~~~~~~---~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 323 (442)
.+|.++++.+..+... . .+.....+..+|+ .++.++. +|.++++|..+++.+.......
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~-------~G~l~~lD~~tG~~l~~~~~~~~~ 346 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPK-------NGFFYVLDRTNGKLISAEKFGKVT 346 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT-------TSEEEEEETTTCCEEEEEESSCCC
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECC-------CCEEEEEECCCCCEeccccccccc
Confidence 9999999998877542 1 2333333445775 6778887 9999999999988763322111
Q ss_pred ---------cc------------------------eeeeEEecCCCCeeEEEe---------------------------
Q 013475 324 ---------AY------------------------TCPCVRHHPFDPYFVAQS--------------------------- 343 (442)
Q Consensus 324 ---------~~------------------------~~~~~~~~~~~~~l~~~~--------------------------- 343 (442)
.. .-..++++|+...+.+..
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence 00 011256667666554411
Q ss_pred ---------CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCC
Q 013475 344 ---------NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQ 414 (442)
Q Consensus 344 ---------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 414 (442)
.++.|..||..++...+..... .......+...+.++++++.||.|++||.++++.+..++....
T Consensus 427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~ 500 (668)
T 1kv9_A 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYP------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (668)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEES------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccCCCCCCCccceEEEEeCCCCcEEEEccCC------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCC
Confidence 2377899999888766543321 1122334556788999999999999999999999988875432
Q ss_pred ce-eEEEEcCCCCCEEEEee
Q 013475 415 AC-IDVAFHPILPNIIGSCS 433 (442)
Q Consensus 415 ~v-~~~~~~p~~~~~l~s~~ 433 (442)
.. .-+.+..+|..+++.++
T Consensus 501 ~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 501 IVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cccCceEEEECCEEEEEEEe
Confidence 11 22344456634555554
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.05 E-value=1.7e-07 Score=83.42 Aligned_cols=239 Identities=13% Similarity=0.006 Sum_probs=144.4
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec-----------------cCCCceeEEEeCC-CCCEEEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN-----------------FHSAAVNDVKWSQ-QGLFVLS 207 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~h~~~v~~l~~~~-~~~~l~s 207 (442)
....+++|+++ +++++++..++.|..|+..+.......... .....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 34568889998 887788888899999987443221111100 0123578999997 554 555
Q ss_pred EecCCcEEEEECCCCcEEEeee--C---CcceEEEEEcc-CCCCEEEEeeC-----------------CCcEEEEECCCC
Q 013475 208 CGYDCSSRLVDVEKGIETQSFR--E---ELAVRVVKFHP-ENSNLFLSGGS-----------------KGLLRLWDIRTG 264 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~--~---~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~iwd~~~~ 264 (442)
+...+.|..+|..+++...... . ......+++.+ +| +++++... ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 5555568888877653222111 1 23478899999 86 66665432 367889998766
Q ss_pred ceEEEeccCCCCEeEEEEeeCCCEEEec-cCCCCCcCCCCeEEEEeCCCCcc--cceeeccccceeeeEEecCCCCeeEE
Q 013475 265 KVAHEYIQSLGPILDVEFTINGKQFVSS-SDVSGSNMSENSIVVWDVSREVP--LSKQVYVEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (442)
+...... .......++|+++++.|+.+ .. .+.|.+|++..... ...... ... ...+++.++|.++++
T Consensus 176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~-------~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFL-------SHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEEEEEE-EESCCCEEEECTTSSEEEEEEGG-------GTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEE
T ss_pred EEEEecc-CCccCcceEECCCCCEEEEEeCC-------CCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEE
Confidence 5432222 12344679999999866554 44 68999999875321 111111 112 677899999987777
Q ss_pred EeC----------CCeEEEeeCCCCcccccceeEeeccc--ccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 342 QSN----------GNYIAIFSSTPPFRLDKFKRYESHGV--SGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 342 ~~~----------~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
... .+.|..++.... .. ..+..... ...+..+++ .+++++++...++.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~G~-~~---~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEFGN-IL---EVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTTSC-EE---EEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECCCCC-EE---EEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 544 467888887532 22 22221110 133555666 4666666666778899998753
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=5.7e-08 Score=81.45 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=130.2
Q ss_pred Ccceecccccccc--eEEEEeeCCCCCEEEEecCCC--cEEEEEcccCCcceeeeeccCCCceeE--EEeCCCCCEEEEE
Q 013475 135 GRLSTALCHHTKA--VNSINWSPTHAHLLASAGMDQ--SICIWNVWSRDQKLARVLNFHSAAVND--VKWSQQGLFVLSC 208 (442)
Q Consensus 135 ~~~~~~l~~h~~~--V~~~~~s~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~--l~~~~~~~~l~s~ 208 (442)
.+.+.++ .|... ...|.|+ + +.++.+.+.+| .|+++|+.++ +.+..+.. ...... +++ ++..|...
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l-~~~~FgeGit~--~g~~ly~l 102 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESG--KTLQQIEL-GKRYFGEGISD--WKDKIVGL 102 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTC--CEEEEEEC-CTTCCEEEEEE--ETTEEEEE
T ss_pred eEEEEEe-cCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCC--cEEEEEec-CCccceeEEEE--eCCEEEEE
Confidence 4555666 45443 4788898 6 67777777766 8999999665 44444442 233333 444 34455555
Q ss_pred e-cCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-----CCEeEEEE
Q 013475 209 G-YDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-----GPILDVEF 282 (442)
Q Consensus 209 ~-~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~ 282 (442)
. .++.+.+||..+.+.+.++.....-..++ +++..++++ ..++.|.++|..+.+.+.++.... ..++.+.|
T Consensus 103 tw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred EeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 4 48899999999999999998544334444 455444444 457889999999998887765421 34556788
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc-----------cceeeeEEecCCCCeeEEEeCC
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE-----------AYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
. +|+.++..-. ++.|.+.|..+++.+..+.... ......++++|+++.|++.+..
T Consensus 180 ~-~G~lyan~w~-------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 180 V-DGEIFANVWQ-------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp E-TTEEEEEETT-------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred E-CCEEEEEEcc-------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6 7876666655 8899999999988776665421 2245789999988877776543
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.00 E-value=1.5e-07 Score=90.42 Aligned_cols=276 Identities=9% Similarity=0.010 Sum_probs=159.5
Q ss_pred EEEEecC-CCcEEEEEc-ccCCcceeeeeccCCC-----------ceeEEEeCCCCCE----EEEEecCCcEEEEECCCC
Q 013475 160 LLASAGM-DQSICIWNV-WSRDQKLARVLNFHSA-----------AVNDVKWSQQGLF----VLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 160 ~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~----l~s~~~d~~v~vwd~~~~ 222 (442)
.|+.++. ++.|.-+|. .++ +.+..+..... ....+++.|.+.. |+.++.|+.|..+|..+|
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred EEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 4555565 788888887 665 33333331111 0123455433334 788888999999999999
Q ss_pred cEEEeeeCCc-----ceEE-EEEccCCCCEEEEee------CCCcEEEEECCCCceEEEeccCCCC--------------
Q 013475 223 IETQSFREEL-----AVRV-VKFHPENSNLFLSGG------SKGLLRLWDIRTGKVAHEYIQSLGP-------------- 276 (442)
Q Consensus 223 ~~~~~~~~~~-----~v~~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-------------- 276 (442)
+.+....... .+.+ ..+. + ..+++++ .+|.|+.+|.++++.+.++......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~--g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C--CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 9988776322 2221 1121 2 3455554 3799999999999988776533111
Q ss_pred -----------------------E-eEEEEeeCCCEEEeccCCC---------CCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 277 -----------------------I-LDVEFTINGKQFVSSSDVS---------GSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 277 -----------------------i-~~~~~~~~~~~l~~~~~~~---------~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
+ ..+++.++...++.+.... ......+.|..+|.++++.+......+
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 1345666666666665400 000012489999999988776655432
Q ss_pred cc--------eeeeEEec-CCC---CeeEEEeCCCeEEEeeCCCCcccccceeEe-------eccccc------------
Q 013475 324 AY--------TCPCVRHH-PFD---PYFVAQSNGNYIAIFSSTPPFRLDKFKRYE-------SHGVSG------------ 372 (442)
Q Consensus 324 ~~--------~~~~~~~~-~~~---~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~-------~~~~~~------------ 372 (442)
.. ....+... .+| ..++.++.++.++++|..++..+....... .....+
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 21 01111221 456 467778899999999998887664332110 000000
Q ss_pred ---------------CcEEEEEccCCCEEEEe---------------------------------c------CCCcEEEE
Q 013475 373 ---------------FPIKCSFSLDGEKLVSG---------------------------------S------SDGSIYFY 398 (442)
Q Consensus 373 ---------------~v~~~~~s~~g~~l~~g---------------------------------~------~dg~i~iw 398 (442)
.-..++++|+..++++. + .+|.|..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 01235677766665542 1 35789999
Q ss_pred ecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 399 NCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 399 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
|+.+++.+-+... ...+..-...-.+ .+++.++.||.|+.||
T Consensus 459 D~~tG~~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 459 NAITGDYKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARD 500 (599)
T ss_dssp CTTTCCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEE
T ss_pred ECCCCCEEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEE
Confidence 9999988777652 2222211122233 3777788999998876
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.00 E-value=3.1e-07 Score=88.18 Aligned_cols=254 Identities=12% Similarity=0.044 Sum_probs=153.6
Q ss_pred EEEecCCCcEEEEEcccCCcceeeeec--cCC--CceeE-EEeCCCCCEEEEEe------cCCcEEEEECCCCcEEEeee
Q 013475 161 LASAGMDQSICIWNVWSRDQKLARVLN--FHS--AAVND-VKWSQQGLFVLSCG------YDCSSRLVDVEKGIETQSFR 229 (442)
Q Consensus 161 l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~--~~v~~-l~~~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~ 229 (442)
|+.++.|+.|..+|..++ +.+.... .+. ..+.+ ..+. ++ .+++++ .++.|+.+|.++|+.+..+.
T Consensus 124 V~v~t~dg~l~AlDa~TG--~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG--ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCC--CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 777888999999998665 4433332 111 01111 1111 44 455554 37999999999999998877
Q ss_pred CCcce---------------------------------------EEEEEccCCCCEEEEeeCC----------------C
Q 013475 230 EELAV---------------------------------------RVVKFHPENSNLFLSGGSK----------------G 254 (442)
Q Consensus 230 ~~~~v---------------------------------------~~~~~~~~~~~~l~~~~~d----------------g 254 (442)
..... ..+++.+.. .+++.+..+ +
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccc
Confidence 33221 134555654 566666554 3
Q ss_pred cEEEEECCCCceEEEeccCCC----------CEeEEEEe-eCC---CEEEeccCCCCCcCCCCeEEEEeCCCCcccceee
Q 013475 255 LLRLWDIRTGKVAHEYIQSLG----------PILDVEFT-ING---KQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV 320 (442)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~----------~i~~~~~~-~~~---~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 320 (442)
.|..+|.++++.+..++.... ++. +... .+| ..++.++. +|.+.++|.++++.+....
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~-------~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDR-------NGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECT-------TSEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECC-------CcEEEEEECCCCCEeeccc
Confidence 799999999999877754321 121 2222 357 46666777 9999999999988765543
Q ss_pred ccc------------cc--------------------------eeeeEEecCCCCeeEEEe-------------------
Q 013475 321 YVE------------AY--------------------------TCPCVRHHPFDPYFVAQS------------------- 343 (442)
Q Consensus 321 ~~~------------~~--------------------------~~~~~~~~~~~~~l~~~~------------------- 343 (442)
... .. .-..++++|+..++++..
T Consensus 351 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 211 00 012345666555544421
Q ss_pred --------------------CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc
Q 013475 344 --------------------NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 344 --------------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
..+.|..||+.++...+.... . .....-.+...+.+++.++.||.|+.||.++|
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~--~----~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--R----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--S----SCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC--C----CCccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 346788888887766554321 1 11111123335778888999999999999999
Q ss_pred eeeEeeeccCCce-eEEEEcCCCCCEEEEee
Q 013475 404 ELERKIKAYEQAC-IDVAFHPILPNIIGSCS 433 (442)
Q Consensus 404 ~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~~ 433 (442)
+.+.+++.....+ .-+.|..+|.+++++.+
T Consensus 505 ~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 505 DLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 9998887543222 22556667745555543
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.00 E-value=6.5e-07 Score=79.67 Aligned_cols=241 Identities=10% Similarity=0.007 Sum_probs=149.6
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee-C-------------------CcceEEEEEccCCCCEEEEe
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-E-------------------ELAVRVVKFHPENSNLFLSG 250 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~-------------------~~~v~~~~~~~~~~~~l~~~ 250 (442)
....+++|.+++++++++..++.|..||..+++...... . ...+..+++.+++.+++ ++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 446788999999878888889999999988765432111 0 13578899997322444 44
Q ss_pred eCCCcEEEEECCCCceEEEecc-----CCCCEeEEEEee-CCCEEEeccCCCC----------CcCCCCeEEEEeCCCCc
Q 013475 251 GSKGLLRLWDIRTGKVAHEYIQ-----SLGPILDVEFTI-NGKQFVSSSDVSG----------SNMSENSIVVWDVSREV 314 (442)
Q Consensus 251 ~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~~~~----------~~~~d~~i~iwd~~~~~ 314 (442)
...+.|..+|..+++. ..+.. .......+++.+ +|+.+++...... ....++.|..||..++.
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4445588888765532 22211 123568899999 8987776432000 00114778899987654
Q ss_pred ccceeeccccceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC--
Q 013475 315 PLSKQVYVEAYTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS-- 391 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-- 391 (442)
..... ........++++++++.+.++ ...+.|..|++..... .....+.. ..+ ...+++.++|+++++...
T Consensus 177 ~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 177 TTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVK--IPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp EEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEE--CSS-EEEEEECTTSCEEEEEEEET
T ss_pred EEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEe--CCC-CCCeEECCCCCEEEEecCcc
Confidence 32111 112245678999999866555 5668999999875321 11122221 123 678999999987776544
Q ss_pred --------CCcEEEEecCCceeeEeeeccC----CceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 392 --------DGSIYFYNCRSSELERKIKAYE----QACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 392 --------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+.|..+|. .++.+..+.... ..++.+++. ++ +++++...++.|.+++
T Consensus 251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILV 310 (322)
T ss_dssp TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEE
T ss_pred cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEe
Confidence 467888886 477776665432 356777774 44 5777666677777653
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=1.9e-06 Score=86.70 Aligned_cols=275 Identities=7% Similarity=0.026 Sum_probs=166.0
Q ss_pred eEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe
Q 013475 148 VNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS 227 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 227 (442)
|.++...++ +++.+ ++.++.|..|+..+....... ...+...|.++....++.+.+ ++.++-|.+||..+++....
T Consensus 175 i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQG-DQIYI-GTSTDGLYTYSITQKTFEKVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEET-TEEEE-EESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCC-CCEEE-EECCCCEEEEeCCCCeEEEec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 888888887 66544 555556888887444222111 112346788888877776554 55454599999887654432
Q ss_pred ee--------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec-------cCCCCEeEEEEeeCCCEEEec
Q 013475 228 FR--------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI-------QSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 228 ~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~ 292 (442)
.. ....|.++....+| .+ ..|+.+ -|.+||..+++...... .....|.++....+|.+.+ +
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g-~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-g 326 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQN-RL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-G 326 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTS-CE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-E
T ss_pred ecCCCCccccCCCeEEEEEEcCCC-CE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-E
Confidence 21 13568999988875 44 444555 58999987765433221 1235799999888887555 4
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceee-----ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQV-----YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES 367 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 367 (442)
+. ++.|..|+........... ......|.++....++. +.+|+.++-|..|+..+............
T Consensus 327 t~-------~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 327 TY-------FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp ES-------SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred EC-------CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 44 6788888876543211111 11234577888877776 44577777788888765432110000000
Q ss_pred ---cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee----ccCCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 368 ---HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK----AYEQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 368 ---~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
......|.++....+|++|.+|+.++-|.+||..+++...... .....|.++...+++ .+.+.. .+| |.+
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwigt-~~G-l~~ 475 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NLWLGT-LSA-LVR 475 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CEEEEE-SSC-EEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CEEEEe-cCc-eeE
Confidence 0113457888888888856677776779999988765432211 124578999988887 444443 344 544
Q ss_pred c
Q 013475 441 Y 441 (442)
Q Consensus 441 w 441 (442)
|
T Consensus 476 ~ 476 (795)
T 4a2l_A 476 F 476 (795)
T ss_dssp E
T ss_pred E
Confidence 4
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.98 E-value=1.7e-07 Score=89.99 Aligned_cols=274 Identities=9% Similarity=0.010 Sum_probs=159.9
Q ss_pred EEEEecC-CCcEEEEEc-ccCCcceeeeeccCCC-ce----------eEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE
Q 013475 160 LLASAGM-DQSICIWNV-WSRDQKLARVLNFHSA-AV----------NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ 226 (442)
Q Consensus 160 ~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~h~~-~v----------~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 226 (442)
.++.++. ++.|.-+|. .++ +.+..+..... .+ ..+.+ .+..++.++.|+.|..+|..+|+.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPG--KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCc--cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4555555 788888887 665 33333321110 00 11222 35578888889999999999999988
Q ss_pred eeeCCc-----ceEE-EEEccCCCCEEEEeeC------CCcEEEEECCCCceEEEeccCCCC------------------
Q 013475 227 SFREEL-----AVRV-VKFHPENSNLFLSGGS------KGLLRLWDIRTGKVAHEYIQSLGP------------------ 276 (442)
Q Consensus 227 ~~~~~~-----~v~~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 276 (442)
.+.... .+.+ .... + ..+++++. ++.|+.+|.++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEEE-C--CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 776322 2221 1111 2 34455544 789999999999988776532110
Q ss_pred --------------------EeEEEEeeCCCEEEeccCCC---------CCcCCCCeEEEEeCCCCcccceeecccc---
Q 013475 277 --------------------ILDVEFTINGKQFVSSSDVS---------GSNMSENSIVVWDVSREVPLSKQVYVEA--- 324 (442)
Q Consensus 277 --------------------i~~~~~~~~~~~l~~~~~~~---------~~~~~d~~i~iwd~~~~~~~~~~~~~~~--- 324 (442)
...+++.++...+..+.... ......+.|..+|.++++.+........
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 01355666656665554200 0000024699999999887766543321
Q ss_pred -----ceeeeEEecCCCC---eeEEEeCCCeEEEeeCCCCcccccceeEeec------c-cccC----------------
Q 013475 325 -----YTCPCVRHHPFDP---YFVAQSNGNYIAIFSSTPPFRLDKFKRYESH------G-VSGF---------------- 373 (442)
Q Consensus 325 -----~~~~~~~~~~~~~---~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------~-~~~~---------------- 373 (442)
.....+....+|+ .++.++.++.++++|..++..+.....-... . ..+.
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 0111122223564 5677888999999999887665432210000 0 0000
Q ss_pred -----------cEEEEEccCCCEEEEec-------------------------------------CCCcEEEEecCCcee
Q 013475 374 -----------PIKCSFSLDGEKLVSGS-------------------------------------SDGSIYFYNCRSSEL 405 (442)
Q Consensus 374 -----------v~~~~~s~~g~~l~~g~-------------------------------------~dg~i~iwd~~~~~~ 405 (442)
-..++++|+..+|++.. .+|.|+.||..+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 02367888877777653 357899999999998
Q ss_pred eEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 406 ERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 406 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.++... ..+....+...+ .+++.++.||.|++||
T Consensus 457 ~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 457 KWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEE
T ss_pred EEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEE
Confidence 8777642 233332233233 3677788999999886
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.98 E-value=4.8e-07 Score=88.86 Aligned_cols=280 Identities=8% Similarity=-0.038 Sum_probs=152.2
Q ss_pred EEEeeC-CCCCEEEEecCCC-----------cEEEEEcccCCcceeeeecc-CCCceeEEEeCCCCCEEEEEec-CCcEE
Q 013475 150 SINWSP-THAHLLASAGMDQ-----------SICIWNVWSRDQKLARVLNF-HSAAVNDVKWSQQGLFVLSCGY-DCSSR 215 (442)
Q Consensus 150 ~~~~s~-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~-d~~v~ 215 (442)
++++.+ + +++++.|+.++ .+.+||..+.....+..+.. +.....++++..+++++++|+. +..+.
T Consensus 190 ~~av~~~~-g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTS-GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTT-TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecC-CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 567777 5 88888887543 58899987776555544432 3334456788889999999984 56899
Q ss_pred EEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEee-CC-----CcEEEEECCCCceEEEe----ccCCCCEeEEEEe
Q 013475 216 LVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGG-SK-----GLLRLWDIRTGKVAHEY----IQSLGPILDVEFT 283 (442)
Q Consensus 216 vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~i~~~~~~ 283 (442)
+||..+++-...-. ....-.++++.++| ++++.|+ .+ ..+.+||..+++-...- ......-....+.
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred EecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 99998875443322 22222345566665 7888887 34 46999999876533220 0000000000111
Q ss_pred eCCCEEEeccCCC--CCcCCCCeEEEEeCCCCcccceeeccc--------cceeeeEEec-CCCCeeEEEeCCC------
Q 013475 284 INGKQFVSSSDVS--GSNMSENSIVVWDVSREVPLSKQVYVE--------AYTCPCVRHH-PFDPYFVAQSNGN------ 346 (442)
Q Consensus 284 ~~~~~l~~~~~~~--~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~l~~~~~~~------ 346 (442)
.+++.++.++... ........+..||..+........... .....++.+. .+++.+++|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 2334334333200 000004567889987765322111110 0112233332 3677777776432
Q ss_pred -----eEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC-----------CcEEEEecCCceee--Ee
Q 013475 347 -----YIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD-----------GSIYFYNCRSSELE--RK 408 (442)
Q Consensus 347 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------g~i~iwd~~~~~~~--~~ 408 (442)
.+.+||.....-..... ........-..++..++|++++.|+.+ ..+.+||..+.+-. ..
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~~--~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFAS--NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEECT--TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CCcceEEEcCCCCCCCeeEEcc--CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 67778776543211100 000111112345667899999999854 46899998775432 21
Q ss_pred eeccCCceeEEEEcCCCCCEEEEeeC
Q 013475 409 IKAYEQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 409 ~~~~~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
+...........+.+++ ++++.||.
T Consensus 506 ~~~~R~~hs~a~ll~dg-~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDG-RVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred CCCccccccHhhcCCCc-EEEecCCC
Confidence 22112222345567888 78888874
No 260
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=4.2e-06 Score=84.24 Aligned_cols=272 Identities=9% Similarity=0.058 Sum_probs=170.2
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc-------CCCceeEEEeCCCCCEEEEEecCCcEEEE
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-------HSAAVNDVKWSQQGLFVLSCGYDCSSRLV 217 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~s~~~d~~v~vw 217 (442)
...|.++....+ +.+.+ |+.++-+.+||..+. ........ ....|.++....+|.+.+ |+.+ -|.+|
T Consensus 214 ~~~i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 214 TKQIQAILQQSP-TRIWV-ATEGAGLFLINPKTK--EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIY 287 (795)
T ss_dssp CCCEEEEEEEET-TEEEE-EEBSSCEEEEETTTT--EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEE
T ss_pred CCeeEEEEEcCC-CCEEE-EECCCCeEEEeCCCC--eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheE
Confidence 457888888877 66444 444445888987443 22222111 235799999988887555 4445 58999
Q ss_pred ECCCCcEEEeee--------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec------cCCCCEeEEEEe
Q 013475 218 DVEKGIETQSFR--------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI------QSLGPILDVEFT 283 (442)
Q Consensus 218 d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~~ 283 (442)
|..+++...... ....|.++....+| . |..|+.++-|..|+..++....-.. .....|.++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 988776543321 23569999998875 4 5567777789999876544322111 123468899888
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-------cccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-------VEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 356 (442)
.+|.+.+ |+. ++.|..||..++........ .....|.++....++..|.+|+.++-|..|+..++
T Consensus 366 ~~g~lWi-Gt~-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 366 KDKNLWI-GTN-------DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp TTSCEEE-EES-------SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred CCCCEEE-EEC-------CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 8877555 554 67899999876543221111 12346788888888875777888788999998764
Q ss_pred cccccceeEee---cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec------cCCceeEEEEcCCCCC
Q 013475 357 FRLDKFKRYES---HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA------YEQACIDVAFHPILPN 427 (442)
Q Consensus 357 ~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ 427 (442)
.. ..+.. ......|.++...++|++.+... +| |.+||..+++....... ....|.++...+++ .
T Consensus 438 ~~----~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~ 510 (795)
T 4a2l_A 438 QV----ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK-R 510 (795)
T ss_dssp CE----EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC-C
T ss_pred cE----EEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCC-C
Confidence 32 11111 01234578888888887666554 44 89999887654332211 23578999999888 4
Q ss_pred EEEEeeCCCcEEEc
Q 013475 428 IIGSCSWNGDVSVY 441 (442)
Q Consensus 428 ~l~s~~~dg~i~iw 441 (442)
+.+.. .+| |..|
T Consensus 511 lWigt-~~G-l~~~ 522 (795)
T 4a2l_A 511 LWIGG-EEG-LSVF 522 (795)
T ss_dssp EEEEE-SSC-EEEE
T ss_pred EEEEe-CCc-eEEE
Confidence 54443 344 5544
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=6.3e-07 Score=74.51 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=127.8
Q ss_pred Ccceeccccccc--ceEEEEeeCCCCCEEEEecCC--CcEEEEEcccCCcceeeeeccCCCce--eEEEeCCCCCEEEE-
Q 013475 135 GRLSTALCHHTK--AVNSINWSPTHAHLLASAGMD--QSICIWNVWSRDQKLARVLNFHSAAV--NDVKWSQQGLFVLS- 207 (442)
Q Consensus 135 ~~~~~~l~~h~~--~V~~~~~s~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s- 207 (442)
.+.+.++ .|.. -...+.|+. +.++.+.+.+ ..|+++|+.++ +.+..+.-. ... -.+++. +..|..
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~-~~~fgeGi~~~--~~~ly~l 80 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETG--RILQRAEVP-PPYFGAGIVAW--RDRLIQL 80 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTC--CEEEEEECC-TTCCEEEEEEE--TTEEEEE
T ss_pred eEEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCC--CEEEEEeCC-CCcceeEEEEe--CCEEEEE
Confidence 4555666 4554 456889985 4556666654 48999999665 444444321 222 233443 344444
Q ss_pred EecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCC-----CCEeEEEE
Q 013475 208 CGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSL-----GPILDVEF 282 (442)
Q Consensus 208 ~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~ 282 (442)
.-.++.+.+||..+.+.+.++.....-..++ +++..++++ ..++.|.++|..+.+.+.++.... ..++.+.|
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 4458999999999999999999655445555 455455555 457899999999998887775422 34567777
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecc------------ccceeeeEEecCCCCeeEEEeC
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYV------------EAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
. +|+.++..-. +..|.+.|.++++.+..+... .......++++|+++.|++.+.
T Consensus 158 ~-~G~lyanvw~-------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V-NGELLANVWL-------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E-TTEEEEEETT-------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e-CCEEEEEECC-------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6 7777766655 789999999998877665532 2235578999998777666553
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.92 E-value=1e-05 Score=72.62 Aligned_cols=247 Identities=8% Similarity=-0.057 Sum_probs=153.8
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCCCc
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGI 223 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~ 223 (442)
.+..+|.+..++ +.++++ . ...|+..++... .....+. ....+..++|.+.+..|+.+. ..+.|..++++...
T Consensus 33 ~d~~~C~~~~~~-~~ll~~-~-~~~I~~i~~~g~--~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFA-N-RIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSC-CEEEEE-C-BSCEEEECTTSC--CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccC-ceeEee-c-ccceEEEeCCCC--eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 345567776665 544443 3 346777777433 3333333 334578999998666666554 57889999998765
Q ss_pred EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 224 ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
....+. .......+++.+.+.+++++-...+.|.++++........+.........++++|.+..|..+.. ..
T Consensus 107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~------~~ 180 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW------GN 180 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC------SS
T ss_pred ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc------CC
Confidence 444443 33456789998866577777777789999998754433333344456789999986555544432 04
Q ss_pred -CeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 303 -NSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 303 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
+.|..+++..... ..+..........+++++++..|.. -...+.|..++++...... +. ......+..+++
T Consensus 181 ~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~----~~-~~~~~~P~giav- 253 (349)
T 3v64_C 181 TPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA----VI-SQGLPHPFAITV- 253 (349)
T ss_dssp SCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----EE-CSSCSSEEEEEE-
T ss_pred CCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE----EE-eCCCCCceEEEE-
Confidence 7888888875322 2222222335678999986665554 5566789999987643321 11 111244667777
Q ss_pred cCCCEEEEecCCCcEEEEecCCceeeEeee
Q 013475 381 LDGEKLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
.++.++++-...+.|..+|..+++.+..+.
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 345556666677889888866676655554
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=8.8e-07 Score=81.93 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=143.4
Q ss_pred ceeEEEeCC-CCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCC----cEEEEECCCCce
Q 013475 192 AVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKG----LLRLWDIRTGKV 266 (442)
Q Consensus 192 ~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 266 (442)
....|+|+| ++..|+.+...+.|+.+|++.+..............++|++++..++++...++ .+.+++. .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 457899998 456677766668899999988776655556667899999999733555544332 2444443 2322
Q ss_pred E--EEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCe-eEEE
Q 013475 267 A--HEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPY-FVAQ 342 (442)
Q Consensus 267 ~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 342 (442)
. ..+.. ......+++++ +|.++++-.. ++.|..++....................++++|++++ +++-
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~-------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWN-------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETT-------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECC-------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 1 22222 23457788999 6776666655 8899999998654322222222234668999999995 4555
Q ss_pred eCCCeEEEeeCCCC-cccccceeEeec-c------------cccCcE-EEEEc--------cCCCEEEEecCCCcEEEEe
Q 013475 343 SNGNYIAIFSSTPP-FRLDKFKRYESH-G------------VSGFPI-KCSFS--------LDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 343 ~~~~~i~i~~~~~~-~~~~~~~~~~~~-~------------~~~~v~-~~~~s--------~~g~~l~~g~~dg~i~iwd 399 (442)
...+.|..++.+.. ..+.....+.+. . .-.... .++.. ++|.++++-..++.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67789999887642 111111112111 0 011223 34442 3466666666678888888
Q ss_pred cCCceeeEeeec----c-------------CCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 400 CRSSELERKIKA----Y-------------EQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 400 ~~~~~~~~~~~~----~-------------~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.+++....... . -.....|+++++++.++++-..++.|+.+
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 44544332211 0 11478999999532566666666777754
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.90 E-value=1.6e-06 Score=83.38 Aligned_cols=260 Identities=13% Similarity=0.074 Sum_probs=155.3
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCC--C--cee-EEEeCC---CCC-EEEEEe------cCCcEEEEECCCC
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHS--A--AVN-DVKWSQ---QGL-FVLSCG------YDCSSRLVDVEKG 222 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~--~--~v~-~l~~~~---~~~-~l~s~~------~d~~v~vwd~~~~ 222 (442)
+..++.++.|+.|..+|..++ +.+....... . .+. ...... +++ .+++++ .++.|..+|..+|
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 346777888999999998665 4443332211 0 111 111111 233 555554 2789999999999
Q ss_pred cEEEeeeCCcc-e-----------------------------------------EEEEEccCCCCEEEEeeC--------
Q 013475 223 IETQSFREELA-V-----------------------------------------RVVKFHPENSNLFLSGGS-------- 252 (442)
Q Consensus 223 ~~~~~~~~~~~-v-----------------------------------------~~~~~~~~~~~~l~~~~~-------- 252 (442)
+.+........ + ..+++.++. .+++.+..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCc
Confidence 98876653210 0 124555654 55555542
Q ss_pred ------------C----CcEEEEECCCCceEEEecc--CCC----CEeE-EEEe---eCCC---EEEeccCCCCCcCCCC
Q 013475 253 ------------K----GLLRLWDIRTGKVAHEYIQ--SLG----PILD-VEFT---INGK---QFVSSSDVSGSNMSEN 303 (442)
Q Consensus 253 ------------d----g~i~iwd~~~~~~~~~~~~--~~~----~i~~-~~~~---~~~~---~l~~~~~~~~~~~~d~ 303 (442)
| +.|..+|.++++.+..++. |.. .+.. +.+. .+|+ .++.++. +|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~-------~G 346 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADR-------NG 346 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECT-------TS
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECC-------Cc
Confidence 2 5899999999999887753 211 1111 2222 3664 6777777 99
Q ss_pred eEEEEeCCCCcccceeecccc------------c--------------------------------eeeeEEecCCCCee
Q 013475 304 SIVVWDVSREVPLSKQVYVEA------------Y--------------------------------TCPCVRHHPFDPYF 339 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~------------~--------------------------------~~~~~~~~~~~~~l 339 (442)
.++++|.++++.+........ . .-..++++|+...+
T Consensus 347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 999999999887654433210 0 00134556665555
Q ss_pred EEEe---------------------------------CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEE
Q 013475 340 VAQS---------------------------------NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKL 386 (442)
Q Consensus 340 ~~~~---------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 386 (442)
++.. ..+.|..||+.++...+..... . ....-.....+.++
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~----~~~~g~~~tagglv 500 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--L----PLWAGVLATAGNLV 500 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--S----CCCSCCEEETTTEE
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--C----CCcccceEeCCCEE
Confidence 5432 2578888999888766544321 1 11111222356788
Q ss_pred EEecCCCcEEEEecCCceeeEeeeccCCce-eEEEEcCCCCCEEEEee
Q 013475 387 VSGSSDGSIYFYNCRSSELERKIKAYEQAC-IDVAFHPILPNIIGSCS 433 (442)
Q Consensus 387 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~~ 433 (442)
+.|+.||.++.||.++|+.+.+++.....+ .-+.|..+|..++++.+
T Consensus 501 f~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 501 FTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 889999999999999999999887643322 22667677755655543
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.90 E-value=1.7e-05 Score=70.16 Aligned_cols=235 Identities=7% Similarity=-0.064 Sum_probs=142.6
Q ss_pred EEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCC----CcEEEeee-CCcce
Q 013475 161 LASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEK----GIETQSFR-EELAV 234 (442)
Q Consensus 161 l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~----~~~~~~~~-~~~~v 234 (442)
|+.+. ...|+..|+... .....+. ....+..++|.+++..|+.+. .++.|..+++.. ......+. .-...
T Consensus 4 ll~~~-~~~I~~i~~~~~--~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEC-BSSEEEEETTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEC-CCeEEEEECCCc--ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 33433 357888898554 3333343 345678999998665555554 468899999876 22222232 23456
Q ss_pred EEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCc
Q 013475 235 RVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
..+++.+.+.+++++-...+.|.++++........+.........+++.|.+..|+.+... ..+.|..+++....
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-----~~~~I~~~~~dG~~ 154 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVD 154 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-----SSCEEEEEETTSCC
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-----CCCeEEEEcCCCCC
Confidence 8899987655677776778899999987543333333334567899999866655444320 02688888876432
Q ss_pred ccceeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEee-cccccCcEEEEEccCCCEEEEecCC
Q 013475 315 PLSKQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYES-HGVSGFPIKCSFSLDGEKLVSGSSD 392 (442)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~d 392 (442)
...+....-.....+++++++..|.. -...+.|..++.+.... ..+.. ......+..+++. .+.++++-...
T Consensus 155 -~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----~~~~~~~~~~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 155 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred -eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----EEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence 22222222345678999987666555 45667999999886432 12211 1122346677775 45555666677
Q ss_pred CcEEEEecCCceeeEeee
Q 013475 393 GSIYFYNCRSSELERKIK 410 (442)
Q Consensus 393 g~i~iwd~~~~~~~~~~~ 410 (442)
+.|..+|..+++.+..+.
T Consensus 229 ~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CeEEEEeCCCCcceEEEe
Confidence 889999977776555543
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.89 E-value=8.6e-07 Score=85.23 Aligned_cols=278 Identities=11% Similarity=-0.013 Sum_probs=157.6
Q ss_pred CCEEEEecCCCcEEEEEcccCCcceeeeeccCCCc---------eeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEee
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAA---------VNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSF 228 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 228 (442)
+. ++.++.++.|.-+|..++ +.+..+...... ...+++ .+..++.++.|+.|..+|.++|+.+..+
T Consensus 69 g~-vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 69 GV-IYVTASYSRLFALDAKTG--KRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TE-EEEEETTTEEEEEESSSC--CEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CE-EEEEcCCCCEEEEECCCC--cEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 44 444444344888887555 444444322111 012222 3457888888999999999999998877
Q ss_pred eCCc-----ceE-EEEEcc---CCCCEEEEee------CCCcEEEEECCCCceEEEeccCCCCE----------------
Q 013475 229 REEL-----AVR-VVKFHP---ENSNLFLSGG------SKGLLRLWDIRTGKVAHEYIQSLGPI---------------- 277 (442)
Q Consensus 229 ~~~~-----~v~-~~~~~~---~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i---------------- 277 (442)
.... .+. ...+.. ++...+++++ .++.|+.+|.++++.+.........+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 6321 111 111111 1222666665 37899999999999877653321000
Q ss_pred -------------------------eEEEEeeCCCEEEeccCCC-----------C------CcCCCCeEEEEeCCCCcc
Q 013475 278 -------------------------LDVEFTINGKQFVSSSDVS-----------G------SNMSENSIVVWDVSREVP 315 (442)
Q Consensus 278 -------------------------~~~~~~~~~~~l~~~~~~~-----------~------~~~~d~~i~iwd~~~~~~ 315 (442)
..++++++...++.+.... . .....+.|..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 1345666666666544210 0 011126899999999988
Q ss_pred cceeecccc------ceeeeEEec---CCCC---eeEEEeCCCeEEEeeCCCCcccccceeEe------ec---------
Q 013475 316 LSKQVYVEA------YTCPCVRHH---PFDP---YFVAQSNGNYIAIFSSTPPFRLDKFKRYE------SH--------- 368 (442)
Q Consensus 316 ~~~~~~~~~------~~~~~~~~~---~~~~---~l~~~~~~~~i~i~~~~~~~~~~~~~~~~------~~--------- 368 (442)
+......+. ....-+... .+|+ .++.++.++.++++|..++..+..+..-. +.
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 776544321 001111122 4563 67789999999999998877654322110 00
Q ss_pred --------------cccc-----------CcEEEEEccCCCEEEEec---------------------------------
Q 013475 369 --------------GVSG-----------FPIKCSFSLDGEKLVSGS--------------------------------- 390 (442)
Q Consensus 369 --------------~~~~-----------~v~~~~~s~~g~~l~~g~--------------------------------- 390 (442)
.... .-..++++|+..++++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 0000 001356777655555432
Q ss_pred CCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 391 SDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 391 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
.+|.|..||+.+++.+-+..... .+..-.....+ .+++.++.||.|+.||
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D 513 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFD 513 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEE
Confidence 36889999999999887766432 22221111223 4777889999999886
No 267
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.87 E-value=5.2e-06 Score=71.12 Aligned_cols=260 Identities=12% Similarity=0.146 Sum_probs=162.5
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCE
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNL 246 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 246 (442)
+.+|.|-|+.+......+-+. -+ +.-.+|..+.|+.-. ..++.|+|+++.+.++.+.....|..-.|-.+. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~-Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS-AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC-CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS-EE
T ss_pred CCEEEEEECCCCCCccccccc-cc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC-eE
Confidence 347889999776544333333 22 333588887777665 788999999999999999988888888898763 33
Q ss_pred EEEeeCCCcEEEEECCC-CceEEEeccC----CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec
Q 013475 247 FLSGGSKGLLRLWDIRT-GKVAHEYIQS----LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY 321 (442)
Q Consensus 247 l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 321 (442)
-++. +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+-....+.-.|.+.+|..+.+. .+...
T Consensus 121 ~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ie 196 (365)
T 2xzh_A 121 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIE 196 (365)
T ss_dssp EEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEEC
T ss_pred EEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc--cceee
Confidence 3333 34799999974 3555666544 34677777788999988766422222335889999987653 22222
Q ss_pred cccceeeeEEec--CCCC-eeEEEe---CCCeEEEeeCCCC-ccccccee------EeecccccCcEEEEEccCCCEEEE
Q 013475 322 VEAYTCPCVRHH--PFDP-YFVAQS---NGNYIAIFSSTPP-FRLDKFKR------YESHGVSGFPIKCSFSLDGEKLVS 388 (442)
Q Consensus 322 ~~~~~~~~~~~~--~~~~-~l~~~~---~~~~i~i~~~~~~-~~~~~~~~------~~~~~~~~~v~~~~~s~~g~~l~~ 388 (442)
.|......+... +... .++.+. .++.+.+.++... .....+.+ +......+...++..|+....++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 332222222211 1111 222222 2368888888543 11111111 111234577889999999899999
Q ss_pred ecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 389 GSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 389 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
-+.-|.|++||++++.++..-+-..+.|..-+-+... .=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~-~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGG-TEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCC-CcEEEEcCCCEE
Confidence 9999999999999999988776656666554443332 123333345543
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.85 E-value=1.5e-05 Score=72.71 Aligned_cols=256 Identities=8% Similarity=-0.057 Sum_probs=157.1
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCCCcEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGIET 225 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~ 225 (442)
.-+|.+..+. +. |+.+. ...|+..++... .....+. ....+..++|.+.+..|+.+. ..+.|..++++.....
T Consensus 78 ~~~C~~~~~~-~~-l~~~~-~~~I~~i~~~~~--~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPE-PV-LLFAN-RIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSC-CE-EEEEC-BSCEEEECTTSC--CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCcccc-ce-eEeec-CccceeeccCCC--cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 3455555554 43 43333 357888887443 3333333 345688999998655555544 5788999999877654
Q ss_pred Eeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC-C
Q 013475 226 QSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE-N 303 (442)
Q Consensus 226 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d-~ 303 (442)
..+. .......+++.+.+..++++-...+.|.++++........+.........+++.|.+..|..+.. .. +
T Consensus 152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~------~~~~ 225 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW------GNTP 225 (386)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC------SSSC
T ss_pred EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc------CCCC
Confidence 4443 33456778898766577777777788999998654433333444456789999986665554442 14 7
Q ss_pred eEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE-EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccC
Q 013475 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV-AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLD 382 (442)
Q Consensus 304 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 382 (442)
.|..+++..... ..+..........+++++++..|. +-...+.|..++++..... .+.. .....+..+++ .+
T Consensus 226 ~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~----~~~~-~~~~~P~giav-~~ 298 (386)
T 3v65_B 226 RIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK----AVIS-QGLPHPFAITV-FE 298 (386)
T ss_dssp EEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE----EEEC-SSCSSEEEEEE-ET
T ss_pred EEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE----EEEE-CCCCCceEEEE-EC
Confidence 888888865432 222222233467899997665554 4556688999998764332 1111 11244667888 34
Q ss_pred CCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEE
Q 013475 383 GEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAF 421 (442)
Q Consensus 383 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 421 (442)
+.++++-...+.|..+|..+++.+..+........+|++
T Consensus 299 ~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 299 DSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 556666667888999997677766666543333444443
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.82 E-value=5.6e-06 Score=76.55 Aligned_cols=238 Identities=10% Similarity=-0.014 Sum_probs=144.6
Q ss_pred ceeEEEeCCC--CCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCC---C-cEEEEECCCCc
Q 013475 192 AVNDVKWSQQ--GLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSK---G-LLRLWDIRTGK 265 (442)
Q Consensus 192 ~v~~l~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~ 265 (442)
....|+|.++ +..|+.+...+.|+.+|..+++.............++|+++| +++++.... . .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCe
Confidence 4578999984 445666655588999999888776665566678999999997 555554321 1 23333332221
Q ss_pred e-EEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec-cccceeeeEEecCCCCee-EE
Q 013475 266 V-AHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY-VEAYTCPCVRHHPFDPYF-VA 341 (442)
Q Consensus 266 ~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~ 341 (442)
. ...+. .......+++++ +|.++++-.. ++.|..+|..++........ ........++++|++++| ++
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~-------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYH-------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTT-------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECC-------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 1 01111 223456788999 6776666665 78999999886654222211 111222369999999854 45
Q ss_pred EeCCCeEEEeeCCCCc-ccccceeEeec-------------ccccCcEEEEE---------ccCCCEEEEecCCCcEEEE
Q 013475 342 QSNGNYIAIFSSTPPF-RLDKFKRYESH-------------GVSGFPIKCSF---------SLDGEKLVSGSSDGSIYFY 398 (442)
Q Consensus 342 ~~~~~~i~i~~~~~~~-~~~~~~~~~~~-------------~~~~~v~~~~~---------s~~g~~l~~g~~dg~i~iw 398 (442)
-...+.|+.++.+... .+.....+.+. ..-.....+++ ..+|.++++-..++.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 5567899998865321 11111111111 01123567899 7788877777778899999
Q ss_pred ecCCceeeEeeecc------------------CCceeEEEEc-CCCCCEEEEeeCCCcEEEc
Q 013475 399 NCRSSELERKIKAY------------------EQACIDVAFH-PILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 399 d~~~~~~~~~~~~~------------------~~~v~~~~~~-p~~~~~l~s~~~dg~i~iw 441 (442)
+. ++... ++.+. -.....|+++ +++ .++++=..++.|+.+
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKI 429 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEE
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEE
Confidence 85 55433 33221 1236789999 565 666666666777764
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.82 E-value=1.4e-05 Score=71.80 Aligned_cols=230 Identities=10% Similarity=-0.018 Sum_probs=141.4
Q ss_pred eEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC
Q 013475 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS 273 (442)
Q Consensus 194 ~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 273 (442)
+|.+..++. +|+.+. ...|+..++........+.....+..++|++.+..++++-...+.|+.+++........+...
T Consensus 37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 455555533 444433 456888888877666555666678999999876566666667788999998766544433333
Q ss_pred CCCEeEEEEeeCCC-EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEE-eCC-CeEEE
Q 013475 274 LGPILDVEFTINGK-QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQ-SNG-NYIAI 350 (442)
Q Consensus 274 ~~~i~~~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~i~i 350 (442)
......+++.+.+. ++++-.. .+.|.+.++..... .............++++|.+..+... ... +.|..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEecCCCeEEEEcCC-------CCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 34557889987544 4455444 78999999875432 22222233456789999866655544 444 78998
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
++++.......+. ..-.....+++++++..|+.+ ...+.|..+|+........+........++++.. + .++
T Consensus 187 ~~~dG~~~~~~~~-----~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~-~-~ly 259 (349)
T 3v64_C 187 SSMDGSGRRIIAD-----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFE-D-SLY 259 (349)
T ss_dssp EETTSCSCEESCC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-T-EEE
T ss_pred EeCCCCCcEEEEE-----CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEEC-C-EEE
Confidence 8887653321111 122446789999876666554 4567899999875433222333334566777743 3 455
Q ss_pred EEeeCCCcEEE
Q 013475 430 GSCSWNGDVSV 440 (442)
Q Consensus 430 ~s~~~dg~i~i 440 (442)
++-...+.|..
T Consensus 260 ~td~~~~~V~~ 270 (349)
T 3v64_C 260 WTDWHTKSINS 270 (349)
T ss_dssp EEETTTTEEEE
T ss_pred EecCCCCeEEE
Confidence 55544555544
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=1.3e-05 Score=80.49 Aligned_cols=275 Identities=8% Similarity=-0.008 Sum_probs=165.4
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeee------------eccCCCceeEEEeCCCCCEEEEEecCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV------------LNFHSAAVNDVKWSQQGLFVLSCGYDC 212 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~h~~~v~~l~~~~~~~~l~s~~~d~ 212 (442)
...|.++....+ |. |..|+..+-|.++|..+........ ..-....|.++....+|. |-.|+.++
T Consensus 257 ~~~i~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKD-NK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTT-SE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCC-CC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 356889988877 65 4456654678888875432221111 011346799999988876 55566677
Q ss_pred cEEEEECCCCcEEEee-------e---CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---ccCCCCEeE
Q 013475 213 SSRLVDVEKGIETQSF-------R---EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---IQSLGPILD 279 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~-------~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~ 279 (442)
-|..++..+....... . ....|.++....+| . |..|+.++-|..||..++....-. ......|.+
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 7999998765433221 1 23568888888765 4 455666667999997654322111 123357888
Q ss_pred EEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee-ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcc
Q 013475 280 VEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV-YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFR 358 (442)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 358 (442)
+....+|.+.+ ++. ++.|..+|..+++...... ......+.++...+++...+ ++. +.|..|+..+...
T Consensus 412 i~~d~~g~lWi-gt~-------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 412 SLKDSEGNLWF-GTY-------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV 481 (781)
T ss_dssp EEECTTSCEEE-EET-------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSC
T ss_pred EEECCCCCEEE-Eec-------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE
Confidence 88877777655 443 6789999887654221111 12234677888887776555 444 5688888765432
Q ss_pred cccceeEeec----ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeec----cCCceeEEEEcCCCCCEEE
Q 013475 359 LDKFKRYESH----GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA----YEQACIDVAFHPILPNIIG 430 (442)
Q Consensus 359 ~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~ 430 (442)
. .+... .....+.++...++|++.+....+| |..||..+++.. .+.. ....|.++...+++ .+.+
T Consensus 482 ~----~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g-~lWi 554 (781)
T 3v9f_A 482 I----HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKG-QMWL 554 (781)
T ss_dssp C----EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTS-CEEE
T ss_pred E----ecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCC-CEEE
Confidence 1 11111 1135678888888887666544345 888987765433 2321 13578899998887 4444
Q ss_pred EeeCCCcEEEcC
Q 013475 431 SCSWNGDVSVYE 442 (442)
Q Consensus 431 s~~~dg~i~iwd 442 (442)
+ +.+|.|..||
T Consensus 555 ~-T~~Glv~~~d 565 (781)
T 3v9f_A 555 A-TGEGLVCFPS 565 (781)
T ss_dssp E-ETTEEEEESC
T ss_pred E-ECCCceEEEC
Confidence 4 3466546654
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.80 E-value=7e-06 Score=69.26 Aligned_cols=200 Identities=11% Similarity=0.052 Sum_probs=130.6
Q ss_pred CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEe
Q 013475 231 ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWD 309 (442)
Q Consensus 231 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd 309 (442)
...+..++|+|++..++++...++.|...|.. ++.++.+.. .......|++.+++.++++.-. ++.+.+++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~-------~~~l~~~~ 97 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDER-------DYAIYVIS 97 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETT-------TTEEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECC-------CCcEEEEE
Confidence 45799999999876677778889999999997 888777642 2356788999988887666555 78899998
Q ss_pred CCCCccc---ceee-----ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee-----cccccCcEE
Q 013475 310 VSREVPL---SKQV-----YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES-----HGVSGFPIK 376 (442)
Q Consensus 310 ~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~~~~~~v~~ 376 (442)
+.....+ .... .........+++++.+..|+++.......+|..+.......+..... ......+..
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 8765421 1111 12334568899999998777776655545554432111001111111 111223578
Q ss_pred EEEcc-CCCEEEEecCCCcEEEEecCCceeeEeeeccC---------CceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 377 CSFSL-DGEKLVSGSSDGSIYFYNCRSSELERKIKAYE---------QACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 377 ~~~s~-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
++++| .+.+++.......|.++|.. ++.+..+.-.. ..-..|+|.++| +++++ ++-+.++++
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEE
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEE
Confidence 99999 45666777778889999966 55555543221 255789999999 56665 566666554
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.79 E-value=3.7e-05 Score=70.33 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=106.9
Q ss_pred ccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC--cceeeeeccCCCceeEEEeCCC-CCEEEEEecCCcEEEE
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD--QKLARVLNFHSAAVNDVKWSQQ-GLFVLSCGYDCSSRLV 217 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~d~~v~vw 217 (442)
+...-..+..|+|++.++.++++-...+.|+.+++.... ......+.........|++... +++.++-...+.|.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 334456789999999746666665667889999875421 1222333334456788999874 4444444557889999
Q ss_pred ECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeC-CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 218 DVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGS-KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 218 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
+++.......+. .......+++.|.+..++++-.. .+.|...++........+.........|++++++..|..+..
T Consensus 187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~- 265 (400)
T 3p5b_L 187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS- 265 (400)
T ss_dssp CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET-
T ss_pred eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC-
Confidence 998766555554 44568999999976455555433 478999998644333333333456788999987666655543
Q ss_pred CCCcCCCCeEEEEeCCC
Q 013475 296 SGSNMSENSIVVWDVSR 312 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~ 312 (442)
..+.|..+|+..
T Consensus 266 -----~~~~I~~~d~dG 277 (400)
T 3p5b_L 266 -----KLHSISSIDVNG 277 (400)
T ss_dssp -----TTTEEEEEETTS
T ss_pred -----CCCEEEEEeCCC
Confidence 167888888864
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.78 E-value=2.6e-05 Score=68.97 Aligned_cols=221 Identities=9% Similarity=-0.015 Sum_probs=137.0
Q ss_pred EEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----CceEEEeccCCCCEeE
Q 013475 204 FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----GKVAHEYIQSLGPILD 279 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~ 279 (442)
+|+.+. ...|+..|+.+.+....+.....+..+.|++.+..++++-..++.|+.+++.. ......+.........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 344444 45699999998877666666677899999987656777767778999999875 2222223323345578
Q ss_pred EEEeeCCC-EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC--CeEEEeeCCCC
Q 013475 280 VEFTINGK-QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG--NYIAIFSSTPP 356 (442)
Q Consensus 280 ~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~i~~~~~~ 356 (442)
+++.+.+. .+++-.. .+.|.++++..... ..+..........++++|.+..++.+..+ +.|..++++..
T Consensus 82 lavd~~~~~ly~~d~~-------~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSV-------LGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (316)
T ss_dssp EEEETTTTEEEEEETT-------TTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEeecCCeEEEEECC-------CCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence 99986544 4455454 78999999875432 22222233456789999876665554443 68888888764
Q ss_pred cccccceeEeecccccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeec---cCCceeEEEEcCCCCCEEEEe
Q 013475 357 FRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKA---YEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 357 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~ 432 (442)
... .+. ...-.....+++++++..|+.+ ...+.|..+|+.... ...+.. ......++++.. + .++++-
T Consensus 154 ~~~----~~~-~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~-~ly~~d 225 (316)
T 1ijq_A 154 DIY----SLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTD 225 (316)
T ss_dssp CEE----EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEE
T ss_pred CeE----EEE-ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-C-EEEEEE
Confidence 321 111 1122457789999877666655 456789999987432 233321 123456777753 3 466665
Q ss_pred eCCCcEEEc
Q 013475 433 SWNGDVSVY 441 (442)
Q Consensus 433 ~~dg~i~iw 441 (442)
...+.|..+
T Consensus 226 ~~~~~V~~~ 234 (316)
T 1ijq_A 226 IINEAIFSA 234 (316)
T ss_dssp TTTTEEEEE
T ss_pred CCCCeEEEE
Confidence 556666554
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.76 E-value=1.3e-05 Score=73.12 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=143.1
Q ss_pred eEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccC
Q 013475 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS 273 (442)
Q Consensus 194 ~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 273 (442)
.|.+..+. .+|+.+. ...|+.+++..............+..++|++.+..++++-...+.|+.+++........+...
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 34444443 3444443 467899999887666666666778999999876567677667789999998766544434333
Q ss_pred CCCEeEEEEeeCCCE-EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe-CC-CeEEE
Q 013475 274 LGPILDVEFTINGKQ-FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NG-NYIAI 350 (442)
Q Consensus 274 ~~~i~~~~~~~~~~~-l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~i~i 350 (442)
......+++.+.+.. +++-.. .+.|.+.++..... ..+..........++++|.+..|.... .. +.|..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~-------~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETT-------TTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCC-------CCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 345577889875444 455444 77898888875432 222222334567889998766555544 34 68888
Q ss_pred eeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 351 FSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
++++...... +. ...-.....++|++++..|+.+ ...+.|..+|+........+........+|++..+ .++
T Consensus 230 ~~~dG~~~~~----~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~--~ly 302 (386)
T 3v65_B 230 SSMDGSGRRI----IA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFED--SLY 302 (386)
T ss_dssp EETTSCSCEE----EE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETT--EEE
T ss_pred EeCCCCCcEE----EE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECC--EEE
Confidence 8887653321 11 1122346789999866666554 55678999998754333333323345677777433 466
Q ss_pred EEeeCCCcEEEc
Q 013475 430 GSCSWNGDVSVY 441 (442)
Q Consensus 430 ~s~~~dg~i~iw 441 (442)
++-...+.|..+
T Consensus 303 ~td~~~~~V~~~ 314 (386)
T 3v65_B 303 WTDWHTKSINSA 314 (386)
T ss_dssp EEETTTTEEEEE
T ss_pred EeeCCCCeEEEE
Confidence 665555655543
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.75 E-value=9.5e-05 Score=65.67 Aligned_cols=274 Identities=11% Similarity=0.047 Sum_probs=148.8
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCC-cceeee-eccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRD-QKLARV-LNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
...+.+|.|.++ +..+++| .+|.|. ...+.+. .+.+.. .......+.+|.|.+ +. ++.++.++.|.. ..+.+
T Consensus 35 ~~~~~~v~~~~~-~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSS-SCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCC-CcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 457999999877 6667754 466552 2322221 122111 112345788999976 33 444556664443 33444
Q ss_pred cEEEeee----CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 223 IETQSFR----EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 223 ~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
+.-.... ....+..+.+.+++ .+++++ .+|.|+.- ...++. ..........+..+.+.+++.+++.+.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~---- 181 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS---- 181 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET----
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC----
Confidence 4333332 23457778877664 555544 45654332 122322 222234456788999999998888776
Q ss_pred CcCCCCeEEE-EeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 298 SNMSENSIVV-WDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 298 ~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
++.+.. .|- .+..-..........+..+.+.+++..++ .+.++.+++.+.+.+.....+..- .......+..
T Consensus 182 ----~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~ 254 (327)
T 2xbg_A 182 ----RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSP-LRRNSVGFLD 254 (327)
T ss_dssp ----TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCT-TSSCCSCEEE
T ss_pred ----CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCC-cccCCcceEE
Confidence 444443 332 12222222223344677788888886554 445677776643322222111100 0011123678
Q ss_pred EEEccCCCEEEEecCCCcEEEEecCCceeeEeeec---cCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475 377 CSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKA---YEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 442 (442)
+.+.+++.+++++. +|.| ++..+.++.-..+.. +...+.++.|.+++ .++.++.+|.|.-++
T Consensus 255 v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 255 LAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYV 319 (327)
T ss_dssp EEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEEC
T ss_pred EEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEc
Confidence 88988888777765 5666 445555654444432 24567889997654 566667789887653
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=4.2e-05 Score=76.76 Aligned_cols=274 Identities=10% Similarity=0.026 Sum_probs=160.3
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee-----ccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL-----NFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
..|.++....+ +.+.+ |+.+ -+.+||..+......... ......|.++....+|. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 56889988887 66554 4444 688898744321111110 01245799999888776 4456654568999988
Q ss_pred CCcEEEeee---------------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe---------ccCCCC
Q 013475 221 KGIETQSFR---------------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY---------IQSLGP 276 (442)
Q Consensus 221 ~~~~~~~~~---------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~ 276 (442)
+++...... ....|.++....+| . |..|+.++-|..|+..+.....-. ......
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 765332111 24568899888875 4 556676777999998765432211 012346
Q ss_pred EeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccccee--eccccceeeeEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 277 ILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQ--VYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 277 i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
|.++....+|.+.+. +. ++.|..||..+....... .......+.++....++.+ .+|+.++.+..++..
T Consensus 365 v~~i~~d~~g~lWig-t~-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 365 VSSVCDDGQGKLWIG-TD-------GGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTR 435 (781)
T ss_dssp EEEEEECTTSCEEEE-EB-------SSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSS
T ss_pred eEEEEEcCCCCEEEE-eC-------CCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCC
Confidence 888888877765544 43 677889998654322111 0112345777877776654 446676778888876
Q ss_pred CCcccccceeEee-cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeecc-----CCceeEEEEcCCCCCE
Q 013475 355 PPFRLDKFKRYES-HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAY-----EQACIDVAFHPILPNI 428 (442)
Q Consensus 355 ~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~ 428 (442)
+... ..+.. ......|.++...++|++.+. +. +-|..||..+++........ ...|.++...+++ .+
T Consensus 436 ~~~~----~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~l 508 (781)
T 3v9f_A 436 LKKF----QIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RF 508 (781)
T ss_dssp SCEE----EECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CE
T ss_pred CCcE----EEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CE
Confidence 5422 11111 112345778888888765554 44 45899998776543322211 3578999999888 44
Q ss_pred EEEeeCCCcEEEcC
Q 013475 429 IGSCSWNGDVSVYE 442 (442)
Q Consensus 429 l~s~~~dg~i~iwd 442 (442)
.+ |+.++-|..||
T Consensus 509 Wi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 509 WI-GTFGGGVGIYT 521 (781)
T ss_dssp EE-EESSSCEEEEC
T ss_pred EE-EEcCCCEEEEe
Confidence 44 44433344443
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=5.6e-06 Score=76.53 Aligned_cols=238 Identities=11% Similarity=0.124 Sum_probs=138.0
Q ss_pred ceEEEEeeC-CCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-C----cEEEEECC
Q 013475 147 AVNSINWSP-THAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-C----SSRLVDVE 220 (442)
Q Consensus 147 ~V~~~~~s~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~----~v~vwd~~ 220 (442)
....|+|+| ++++ |+.+...+.|+.+|+... ....... .......|+|++++++|+.+... + .+.+++.
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~--~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKE--YVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTT--EEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCC--EEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 457899998 4344 555544478888887433 3333333 45668899999999977766642 1 2333443
Q ss_pred CCcEE--EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc-CCCCEeEEEEeeCCCEEEe-ccCCC
Q 013475 221 KGIET--QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ-SLGPILDVEFTINGKQFVS-SSDVS 296 (442)
Q Consensus 221 ~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~-~~~~~ 296 (442)
.+... ..+........++++|++..++++-..++.|+.++...+........ .......++|+++|++|+. -..
T Consensus 213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-- 290 (430)
T 3tc9_A 213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-- 290 (430)
T ss_dssp GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT--
T ss_pred CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC--
Confidence 33221 23333345677889994447777777788999999986654222221 2234678999999995444 444
Q ss_pred CCcCCCCeEEEEeCCCC--cc--cceeecc---------------ccceeeeEEec--------CCCCeeEEEeCCCeEE
Q 013475 297 GSNMSENSIVVWDVSRE--VP--LSKQVYV---------------EAYTCPCVRHH--------PFDPYFVAQSNGNYIA 349 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~--~~--~~~~~~~---------------~~~~~~~~~~~--------~~~~~l~~~~~~~~i~ 349 (442)
.+.|..++.... .. ...+... ...+...+... +++.++++-..++.|+
T Consensus 291 -----~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 291 -----QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp -----TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred -----CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 789999886532 11 1111100 00011134442 3456666666778888
Q ss_pred EeeCCCCcccccceeEeecc----------------cccCcEEEEEccC-CCEEEEecCCCcEEEEecC
Q 013475 350 IFSSTPPFRLDKFKRYESHG----------------VSGFPIKCSFSLD-GEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~----------------~~~~v~~~~~s~~-g~~l~~g~~dg~i~iwd~~ 401 (442)
.++.... + ..+.+.. .-..+..++++++ |.++++-..++.|+.++++
T Consensus 366 ~i~~~G~--v---~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTPQGR--V---TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECTTSE--E---EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECCCCc--E---EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8885431 1 1222110 0124778999984 5555555566778877753
No 279
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.72 E-value=3.8e-05 Score=68.57 Aligned_cols=261 Identities=12% Similarity=0.131 Sum_probs=163.7
Q ss_pred CCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCC
Q 013475 166 MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSN 245 (442)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 245 (442)
.+..|.|-|+.+......+-+.. -+.-.+|..+.|+.-. ..++.|+|+++.+.++.+.....|..-.|-.+. .
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~-~ 118 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-T 118 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-E
T ss_pred CCCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC-e
Confidence 34488999997664443333332 2344678777777655 788999999999999999977778778887653 3
Q ss_pred EEEEeeCCCcEEEEECCC-CceEEEeccC----CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee
Q 013475 246 LFLSGGSKGLLRLWDIRT-GKVAHEYIQS----LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV 320 (442)
Q Consensus 246 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 320 (442)
|+-.+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+-....+.-.|.+.+|..+.+. .+..
T Consensus 119 -l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~i 194 (494)
T 1bpo_A 119 -VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPI 194 (494)
T ss_dssp -EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC--EEEE
T ss_pred -EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc--cchh
Confidence 33333 34799999974 3456666544 34677777888999988665422222236889999987653 2233
Q ss_pred ccccceeeeEEecCC--C-CeeEEEeC---CCeEEEeeCCCC-ccccccee------EeecccccCcEEEEEccCCCEEE
Q 013475 321 YVEAYTCPCVRHHPF--D-PYFVAQSN---GNYIAIFSSTPP-FRLDKFKR------YESHGVSGFPIKCSFSLDGEKLV 387 (442)
Q Consensus 321 ~~~~~~~~~~~~~~~--~-~~l~~~~~---~~~i~i~~~~~~-~~~~~~~~------~~~~~~~~~v~~~~~s~~g~~l~ 387 (442)
..|......+...-+ . ..++.+.. ++.+.+.++... .....+.. +......+....+..|+....++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 333322222222211 1 12222322 478999988543 11111111 11123456788999999999999
Q ss_pred EecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcE
Q 013475 388 SGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDV 438 (442)
Q Consensus 388 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 438 (442)
.-+.-|.|++||+.++.++..-+-....|..-+-+... .=++.....|.|
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQV 324 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTCEE
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCCC-CcEEEEccCceE
Confidence 99999999999999999988776656666655554443 233434455544
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.70 E-value=2e-05 Score=66.53 Aligned_cols=203 Identities=12% Similarity=0.190 Sum_probs=127.9
Q ss_pred cccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec-cCCCceeEEEeCCCCCEEEEEecCCcEEEEE
Q 013475 140 ALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN-FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD 218 (442)
Q Consensus 140 ~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd 218 (442)
.+.+-.+.+..++|+|+++.++++...++.|...|.. .+....+. .-....-.|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 4556667899999999855566667778888888874 34454443 1225678889998887767655678899998
Q ss_pred CCCCcE---EEeee-------CCcceEEEEEccCCCCEEEEeeCCCcEEEEECC---CCceEEEec-------cCCCCEe
Q 013475 219 VEKGIE---TQSFR-------EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR---TGKVAHEYI-------QSLGPIL 278 (442)
Q Consensus 219 ~~~~~~---~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~-------~~~~~i~ 278 (442)
+..... +.... .......++|+|.+. .|+++.+.....+|.+. ....+..+. .+...+.
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 865442 22221 234568999999864 44445544444455443 111122121 1234578
Q ss_pred EEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeecccc--------ceeeeEEecCCCCeeEEEeCCCeEEE
Q 013475 279 DVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEA--------YTCPCVRHHPFDPYFVAQSNGNYIAI 350 (442)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~i~i 350 (442)
.++++|....|++.+. ..+.|.++|.... .+........ .....+++.++|+.+++ ++.+.++.
T Consensus 177 ~l~~dp~tg~lliLS~------~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSH------ESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp EEEEETTTTEEEEEET------TTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred eEEEcCCCCeEEEEEC------CCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 8999996555544443 2788999997754 4444333321 25678999999975555 77788887
Q ss_pred eeCC
Q 013475 351 FSST 354 (442)
Q Consensus 351 ~~~~ 354 (442)
|...
T Consensus 249 f~~~ 252 (255)
T 3qqz_A 249 FTPQ 252 (255)
T ss_dssp EEC-
T ss_pred EEec
Confidence 7643
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.2e-06 Score=76.95 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=145.2
Q ss_pred ceEEEEeeC-CCCCEEEEecCCCcEEEEEcccCCcceeeeecc---CCCceeEEEe-------CCCCCEEEEEecCC---
Q 013475 147 AVNSINWSP-THAHLLASAGMDQSICIWNVWSRDQKLARVLNF---HSAAVNDVKW-------SQQGLFVLSCGYDC--- 212 (442)
Q Consensus 147 ~V~~~~~s~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~~-------~~~~~~l~s~~~d~--- 212 (442)
.-..|+|+| ++++++++-...+.|++.|++++ .+...... .......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT--EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC--EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 43555555544567888887443 33333322 2235899999 99998777776554
Q ss_pred ----cEEEEECCC-CcEE-----EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC-------CCce---------
Q 013475 213 ----SSRLVDVEK-GIET-----QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR-------TGKV--------- 266 (442)
Q Consensus 213 ----~v~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~--------- 266 (442)
.|.+++... +... ..+........++++|++..++++-..++.|+.+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 255665443 2221 2222223446788899766788888888899999987 4443
Q ss_pred --EEE-ec-cCCCCEeEEEEeeCCCEEE-eccCCCCCcCCCCeEEEEeCCCCc-cc---ceeecc--cc-----------
Q 013475 267 --AHE-YI-QSLGPILDVEFTINGKQFV-SSSDVSGSNMSENSIVVWDVSREV-PL---SKQVYV--EA----------- 324 (442)
Q Consensus 267 --~~~-~~-~~~~~i~~~~~~~~~~~l~-~~~~~~~~~~~d~~i~iwd~~~~~-~~---~~~~~~--~~----------- 324 (442)
... +. ........|+|+|+|++|. +-.. .+.|+.++..... .+ ..+... ..
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCC-------CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence 112 11 2223457899999999544 4344 7889886654321 11 111100 00
Q ss_pred -ceee-eEEec-------CCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc----------------------cccC
Q 013475 325 -YTCP-CVRHH-------PFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG----------------------VSGF 373 (442)
Q Consensus 325 -~~~~-~~~~~-------~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~----------------------~~~~ 373 (442)
.... .+... .++.++++-..++.|+.++... .+ .++.+.. .-..
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G--~v---~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~ 445 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG--IV---STYAGRGASTSLADGNQWGTDDGDLREVARFRD 445 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC--BE---EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSS
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC--CE---EEEecccccccccCccccccCCCCchhhhhcCC
Confidence 0122 34443 4567777777888999998543 11 2222210 1124
Q ss_pred cEEEEEccC-CCEEEEecCCCcEEEEecCCceeeEe
Q 013475 374 PIKCSFSLD-GEKLVSGSSDGSIYFYNCRSSELERK 408 (442)
Q Consensus 374 v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~ 408 (442)
+..++++++ |.++++=..+..|+.++++....+..
T Consensus 446 P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 446 VSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred CcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 678899986 77666667788899998876555443
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.68 E-value=5.6e-05 Score=66.70 Aligned_cols=231 Identities=10% Similarity=-0.019 Sum_probs=141.7
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE-ecCCcEEEEECCCCcEE-Eee-eCCcceEEEEEccCC
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC-GYDCSSRLVDVEKGIET-QSF-REELAVRVVKFHPEN 243 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~-~~~-~~~~~v~~~~~~~~~ 243 (442)
...|+..++..........+. ....+..++|.+.+..|+.+ ...+.|..+++..+... ..+ ..-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 467899998654322222222 23456789999855555544 45678999998876321 122 233456788998765
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
.+++++-...+.|.++++........+.........+++.|.+..|+.+... ..+.|..+++.... ...+....
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-----SSCEEEEEETTSCS-CEEEECSS
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCC-eEEEEECC
Confidence 5777777777899999986543333333444567899999865555444320 15788888876432 22222222
Q ss_pred cceeeeEEecCCCCeeE-EEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 324 AYTCPCVRHHPFDPYFV-AQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~l~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
-.....+++++++..|. +-...+.|..++++..... .+. ......+..+++.. +.++.+-...+.|..+|..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~----~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ----AVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE----EEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 33557899998666554 4556789999998764332 111 11224466777753 34555666678899999877
Q ss_pred ceeeEeee
Q 013475 403 SELERKIK 410 (442)
Q Consensus 403 ~~~~~~~~ 410 (442)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76555543
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.67 E-value=1e-05 Score=80.68 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=110.9
Q ss_pred ceEEEEee-CCCCCEEEEec-CCC----cEEEEEcccC-CcceeeeeccCCCceeEEEeCCCCCEEEEEecC-----CcE
Q 013475 147 AVNSINWS-PTHAHLLASAG-MDQ----SICIWNVWSR-DQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-----CSS 214 (442)
Q Consensus 147 ~V~~~~~s-~~~~~~l~s~~-~dg----~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~v 214 (442)
.+...+|| || |++||-+. .+| .|+++|+.++ .. +...+. .....+.|+||++.|+....| ..|
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEe-CCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 99 77776443 233 5999999665 31 111121 124578999999888887765 368
Q ss_pred EEEECCCCcE--EEeee--CCcceEEEEEccCCCCEEEEeeC--CCcEEEEECCCCc-eE--EEec-cCCCCEeEEEEee
Q 013475 215 RLVDVEKGIE--TQSFR--EELAVRVVKFHPENSNLFLSGGS--KGLLRLWDIRTGK-VA--HEYI-QSLGPILDVEFTI 284 (442)
Q Consensus 215 ~vwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~-~~--~~~~-~~~~~i~~~~~~~ 284 (442)
+++++.+++. ...+. .......+.|+|||..++++... ...|+++|+.++. .. ..+. .......++.|+
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~- 328 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH- 328 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-
Confidence 8889887642 23333 33446778999998544444432 3468889988752 22 3333 233444445444
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce-ee-ccccceeeeEEecCCCCeeEEEeCCCe--EEEeeC
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK-QV-YVEAYTCPCVRHHPFDPYFVAQSNGNY--IAIFSS 353 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~--i~i~~~ 353 (442)
+|+.|+..+... ......|..+|+.+...... +. ......+..+.+. .+..+++...++. |.++++
T Consensus 329 ~g~~l~~~t~~~--~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 GTSHLVILTNEG--GAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTTEEEEEECTT--TCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eCCEEEEEeCCC--CCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 366555544310 00134777788765322222 22 1222244555554 2334445566664 555564
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.67 E-value=2e-05 Score=72.81 Aligned_cols=238 Identities=10% Similarity=0.140 Sum_probs=139.0
Q ss_pred ceEEEEeeCC--CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC-----cEEEEEC
Q 013475 147 AVNSINWSPT--HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC-----SSRLVDV 219 (442)
Q Consensus 147 ~V~~~~~s~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~v~vwd~ 219 (442)
.-..|+|+++ +++ |+.+...+.|+.+|..++ .... +.........|+|+++++ |+.+...+ .+...+.
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g--~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQ--YVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTT--EEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCE-EEEEeCCCCEEEEECCCC--EEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4578999983 355 444444489999997433 3333 333456689999999999 55444322 1333333
Q ss_pred CCCcE-EEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEe-cc-CCCCEeEEEEeeCCCEEEec-cCC
Q 013475 220 EKGIE-TQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEY-IQ-SLGPILDVEFTINGKQFVSS-SDV 295 (442)
Q Consensus 220 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~-~~~ 295 (442)
..+.. ...+........+++++++..++++-..++.|+.+|..++.....+ .. ....-..++|++++++|..+ ..
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~- 293 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG- 293 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT-
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC-
Confidence 22211 1122233455678899944477767667788999999877652222 21 11223469999999855444 44
Q ss_pred CCCcCCCCeEEEEeCCC--Cccc--ceeecc--------------ccceeeeEEe---------cCCCCeeEEEeCCCeE
Q 013475 296 SGSNMSENSIVVWDVSR--EVPL--SKQVYV--------------EAYTCPCVRH---------HPFDPYFVAQSNGNYI 348 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~--~~~~--~~~~~~--------------~~~~~~~~~~---------~~~~~~l~~~~~~~~i 348 (442)
.+.|..+++.. +... ..+... .-.....+++ ..++.++++-..++.|
T Consensus 294 ------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 294 ------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred ------CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 78999988753 2111 011000 0112445788 6777777777788899
Q ss_pred EEeeCCCCcccccceeEeecc----------------cccCcEEEEEc-cCCCEEEEecCCCcEEEEecC
Q 013475 349 AIFSSTPPFRLDKFKRYESHG----------------VSGFPIKCSFS-LDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~----------------~~~~v~~~~~s-~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+.++.... + ..+.+.. .-..+..++++ ++|.++++-..++.|+.++++
T Consensus 368 ~~~~~~G~--v---~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTPEGR--V---TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECTTSE--E---EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCC--E---EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99986431 1 1121110 11236678888 566666665666777777653
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=0.00011 Score=67.24 Aligned_cols=222 Identities=8% Similarity=-0.033 Sum_probs=139.5
Q ss_pred EEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC----ceEEEeccCCCCEeE
Q 013475 204 FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG----KVAHEYIQSLGPILD 279 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~ 279 (442)
+|+.+. ...|+..++........+.....+..++|++.+..++++-...+.|+.+++... .....+.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444444 578999999887766666677789999999876566666667788999998652 223333334456788
Q ss_pred EEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC--CCeEEEeeCCCC
Q 013475 280 VEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN--GNYIAIFSSTPP 356 (442)
Q Consensus 280 ~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~i~~~~~~ 356 (442)
+++... ++++++-.. .+.|.+.++...... .+..........++++|.+.+|..... .+.|...+++..
T Consensus 164 lavD~~~~~lY~~d~~-------~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSV-------LGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEETTTTEEEEEETT-------TTEEEEECTTTCSEE-EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred EEEEecCCceEEEECC-------CCeEEEEeCCCCceE-EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 999874 455555554 789999998765322 222223345678999997666665543 368888888765
Q ss_pred cccccceeEeecccccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeec--cCCceeEEEEcCCCCCEEEEee
Q 013475 357 FRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKA--YEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 357 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
.... +. ...-..+..+++++++..|+.+ ...+.|..+|+........+.. .-....++++..+ .++++-.
T Consensus 236 ~~~~----~~-~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~--~lywtd~ 308 (400)
T 3p5b_L 236 DIYS----LV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDI 308 (400)
T ss_dssp SCEE----EE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT--EEEEEES
T ss_pred ccEE----EE-ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC--EEEEecC
Confidence 4321 11 1122457889999877777665 4567899999875433222222 1234556776433 4666655
Q ss_pred CCCcEEEc
Q 013475 434 WNGDVSVY 441 (442)
Q Consensus 434 ~dg~i~iw 441 (442)
..+.|..+
T Consensus 309 ~~~~V~~~ 316 (400)
T 3p5b_L 309 INEAIFSA 316 (400)
T ss_dssp SSCSEEEE
T ss_pred CCCeEEEE
Confidence 55666543
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.59 E-value=2.3e-06 Score=84.08 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=129.1
Q ss_pred eEEEEeeCCCCCEEEEecC-CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cC-----CcEEEEECC
Q 013475 148 VNSINWSPTHAHLLASAGM-DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YD-----CSSRLVDVE 220 (442)
Q Consensus 148 V~~~~~s~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d-----~~v~vwd~~ 220 (442)
..++++..+ +++++.|+. ++.+.+||..+........+.. ...-.++.+.+++++++.|+ .+ ..+.+||..
T Consensus 245 ~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCCC-CCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 345677788 888888884 5689999987664444433331 12223556667899999988 34 569999998
Q ss_pred CCcEEEee-----eCCcceEEEEEccCCCCEEEEeeCCC---------cEEEEECCCCceEEEeccCC---------CCE
Q 013475 221 KGIETQSF-----REELAVRVVKFHPENSNLFLSGGSKG---------LLRLWDIRTGKVAHEYIQSL---------GPI 277 (442)
Q Consensus 221 ~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~---------~~i 277 (442)
+++-...- .....-....+..++ .+++.|+.+| .+..||..+........... ..-
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 87644321 000000001122333 4555555443 46788887765332221111 112
Q ss_pred eEEEEee-CCCEEEeccCCCCCc-CCCC---eEEEEeCCCCccccee--eccccceeeeEEecCCCCeeEEEeCC-----
Q 013475 278 LDVEFTI-NGKQFVSSSDVSGSN-MSEN---SIVVWDVSREVPLSKQ--VYVEAYTCPCVRHHPFDPYFVAQSNG----- 345 (442)
Q Consensus 278 ~~~~~~~-~~~~l~~~~~~~~~~-~~d~---~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~----- 345 (442)
.++.|.. +++.++.|+...... .... .|.+||..+..-.... .........+....++++.+++|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 3344433 677778777411000 0011 6778887765432221 11222223445677899999998754
Q ss_pred ------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecC
Q 013475 346 ------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSS 391 (442)
Q Consensus 346 ------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 391 (442)
..+.+||..+..-. .+... ...........+.++|+.++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~-~~~~~--~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFY-KQNPN--SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEE-ECCCC--SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCcee-ecCCC--CCccccccHhhcCCCcEEEecCCC
Confidence 46888887653211 11111 111122334556789999999885
No 287
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.58 E-value=0.00034 Score=67.68 Aligned_cols=282 Identities=9% Similarity=-0.038 Sum_probs=152.5
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec--CCcEEEEECCCCc
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY--DCSSRLVDVEKGI 223 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~v~vwd~~~~~ 223 (442)
.....|++.+.+++++++-...+.|.+.++... .....+...-.....|++.|.+.+|+.+.. .+.|...+++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~--~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS--LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC--CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 568899999975667777777889999998543 222223234456789999997666665553 3567777776543
Q ss_pred EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCC
Q 013475 224 ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSE 302 (442)
Q Consensus 224 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d 302 (442)
...... .-.....+++.+++..++++-...+.|..+|+..................|++..+ ..+++-.. .
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~-------~ 233 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWS-------T 233 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTT-------T
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCC-------C
Confidence 333332 44568899999976566666666788999998654332222212222345666544 44444443 6
Q ss_pred CeEEEEeCCCCcccceeecc----------c--------------cceeeeEEe-----------cCCC-----------
Q 013475 303 NSIVVWDVSREVPLSKQVYV----------E--------------AYTCPCVRH-----------HPFD----------- 336 (442)
Q Consensus 303 ~~i~iwd~~~~~~~~~~~~~----------~--------------~~~~~~~~~-----------~~~~----------- 336 (442)
+.|...|..+++....+... + ...+..+++ .|.|
T Consensus 234 ~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~ 313 (619)
T 3s94_A 234 HSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK 313 (619)
T ss_dssp CSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBC
T ss_pred CEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccC
Confidence 77888887655422111100 0 001111111 1111
Q ss_pred ---CeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEE-EecCCCcEEEEecCCceeeEeeecc
Q 013475 337 ---PYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLV-SGSSDGSIYFYNCRSSELERKIKAY 412 (442)
Q Consensus 337 ---~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~ 412 (442)
..++.-+..+.|+..++........ ......-..+..++|.+.+..|+ +-...+.|+.+++........+...
T Consensus 314 ~~~~~~Ll~~~~~~i~~i~l~~~~~~~~---~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~ 390 (619)
T 3s94_A 314 DGATELLLLARRTDLRRISLDTPDFTDI---VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ 390 (619)
T ss_dssp SSCSEEEEEEESSCEEEEESSSTTCCCE---ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred CCCceEEEEEcccceEEEecCCCcccee---EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC
Confidence 1112222233455555543321100 00001123467889998555555 4455788999998754333333322
Q ss_pred CCceeEEEEcCCCCCEEEEeeCCCcEEE
Q 013475 413 EQACIDVAFHPILPNIIGSCSWNGDVSV 440 (442)
Q Consensus 413 ~~~v~~~~~~p~~~~~l~s~~~dg~i~i 440 (442)
-....++++...+++++++-+..+.|.+
T Consensus 391 ~~~p~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 391 IAHPDGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCcCceEEecccCcEEEEeCCCCcEEE
Confidence 3467788888655356665555555554
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.56 E-value=0.00015 Score=71.92 Aligned_cols=237 Identities=7% Similarity=-0.088 Sum_probs=142.4
Q ss_pred EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEE-ecCCcEEEEECCCC----cEEEeee-CCcc
Q 013475 160 LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSC-GYDCSSRLVDVEKG----IETQSFR-EELA 233 (442)
Q Consensus 160 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~v~vwd~~~~----~~~~~~~-~~~~ 233 (442)
+|+.+. ...|+..++... .....+. ....+..|+|.+....|+.+ ...+.|+.+++... .....+. ....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~--~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp EEEEEC-BSSEEEECTTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc-ccceeEeeccCC--cceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 344333 356777777443 3333333 45677899999855555544 44678888998753 2233333 4456
Q ss_pred eEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC
Q 013475 234 VRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE 313 (442)
Q Consensus 234 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~ 313 (442)
...|++.+.+.+++++-...+.|.+.++........+.........|++.+.+.+|+.+... ..+.|...++...
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-----~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGV 547 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-----SSCEEEEEETTSC
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-----CCCeEEEEecCCC
Confidence 77899988776777777788899999997544333333344567899999975555544320 0367888888754
Q ss_pred cccceeeccccceeeeEEecCCCCeeEEE-eCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC
Q 013475 314 VPLSKQVYVEAYTCPCVRHHPFDPYFVAQ-SNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD 392 (442)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 392 (442)
.. ..+..........|++.+.+..|..+ ...+.|..++++....... ............+++.. +.++++-...
T Consensus 548 ~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v---~~~~~~l~~P~glav~~-~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI---LEDEKRLAHPFSLAVFE-DKVFWTDIIN 622 (791)
T ss_dssp CE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE---EECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred ce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE---ecCCCccCCCCEEEEeC-CEEEEEECCC
Confidence 32 22322333457789999766655554 5567899999877544321 11111122345666632 3344454566
Q ss_pred CcEEEEecCCceeeEeee
Q 013475 393 GSIYFYNCRSSELERKIK 410 (442)
Q Consensus 393 g~i~iwd~~~~~~~~~~~ 410 (442)
+.|...|..+++.+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 788888877776655554
No 289
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.51 E-value=7.6e-06 Score=81.53 Aligned_cols=200 Identities=9% Similarity=0.034 Sum_probs=111.6
Q ss_pred ceEEEEEc-cCCCCEEEEeeCCC----cEEEEECCCC-ceEE-EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 233 AVRVVKFH-PENSNLFLSGGSKG----LLRLWDIRTG-KVAH-EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 233 ~v~~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
.+...+|+ |||..++++...+| .|+++|+.++ +.+. .+. .....+.|+|||+.|+...... ......|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~--~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDE--TLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECT--TCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECC--CCCCCEE
Confidence 56778999 99854554544443 4999999988 6321 111 1134688999998888776400 0001368
Q ss_pred EEEeCCCCcccceeec--cccceeeeEEecCCCCeeEEEe---CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEc
Q 013475 306 VVWDVSREVPLSKQVY--VEAYTCPCVRHHPFDPYFVAQS---NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 306 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
.++++.++........ ........+.|+|++++|+... ....|+++|+.+......+..+.. ........+.|+
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s~~~~ 328 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYDVQMH 328 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEEEEEE
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEEEeee
Confidence 8888877643222221 2222356788999999988755 345788888876421100011111 111223344443
Q ss_pred cCCCEE-EEecCC----CcEEEEecCCceeeEe-eeccCC--ceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 381 LDGEKL-VSGSSD----GSIYFYNCRSSELERK-IKAYEQ--ACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 381 ~~g~~l-~~g~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
. |+.| +....+ ..|..+|+.++..... +..+.. .+..+.+. +..++++...||..+||
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 3 5544 444433 3677778765322223 333333 45566665 33577888888876654
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.51 E-value=0.00011 Score=64.87 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=133.7
Q ss_pred EEEEEecCCcEEEEECCCCc--EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEE
Q 013475 204 FVLSCGYDCSSRLVDVEKGI--ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDV 280 (442)
Q Consensus 204 ~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~ 280 (442)
+|+.+. ...|+.++++... ....+.....+..+.|++.+..++++-...+.|+.+++..+.. ...+.........+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 5678999998763 2223333456778999987556777767778899999876532 12222223456778
Q ss_pred EEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe--CCCeEEEeeCCCCc
Q 013475 281 EFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS--NGNYIAIFSSTPPF 357 (442)
Q Consensus 281 ~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~i~~~~~~~ 357 (442)
++.+. ++++++-.. .+.|.++++..... ..+..........+++.|.+..|.... ..+.|..++++...
T Consensus 85 avd~~~g~ly~~d~~-------~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 85 ACDWLGEKLYWTDSE-------TNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 156 (318)
T ss_dssp EEETTTTEEEEEETT-------TTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEEcCCCeEEEEECC-------CCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence 88874 444455444 78999999875432 222223334567889998766665554 35788888887643
Q ss_pred ccccceeEeecccccCcEEEEEccCCCEEEEe-cCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCC
Q 013475 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSG-SSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 358 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
.. .+. ...-.....+++++++..|+.+ ...+.|..+|+........+........++++..+ .++++-...+
T Consensus 157 ~~----~~~-~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~~~~ 229 (318)
T 3sov_A 157 RF----III-NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTH 229 (318)
T ss_dssp CE----EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEETTTT
T ss_pred eE----EEE-ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEecCCC
Confidence 22 111 1112446789999976666555 55778999998743322222223345567777543 3555544455
Q ss_pred cEEEc
Q 013475 437 DVSVY 441 (442)
Q Consensus 437 ~i~iw 441 (442)
.|..+
T Consensus 230 ~V~~~ 234 (318)
T 3sov_A 230 SILAC 234 (318)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55543
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.46 E-value=4e-06 Score=82.44 Aligned_cols=242 Identities=7% Similarity=-0.072 Sum_probs=140.1
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCC----CcEEEeee-CCcceEEEEEc
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEK----GIETQSFR-EELAVRVVKFH 240 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~----~~~~~~~~-~~~~v~~~~~~ 240 (442)
.+.|++.++... .....+. ....+..|+|.+.+..|+.+. ..+.|+.+++.. ......+. .......|++.
T Consensus 385 ~~~I~~id~~~~--~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSC--CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCC--cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 357777777443 3333333 334677899998766666654 457899999875 22222222 22345678888
Q ss_pred cCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee
Q 013475 241 PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV 320 (442)
Q Consensus 241 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 320 (442)
+.+.+++++-...+.|.++++........+.........|++.|.+.+|+.+... ..+.|..+++..... ..+.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-----~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-----SSCCEEBCCSSSCCC-CEES
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-----CCCeEEEEeCCCCCe-eEEE
Confidence 6555677766677899999987554333333333456788999865554444320 026788877754322 1221
Q ss_pred ccccceeeeEEecCCCCee-EEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEe
Q 013475 321 YVEAYTCPCVRHHPFDPYF-VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
.........+++++++..| ++-...+.|..+++........+. ..........+++..+ .++++-...+.|..+|
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE---DEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC---CSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe---cCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 1222345679999876555 445567889999987643321111 1111233455666544 4445556678899999
Q ss_pred cCCceeeEeeeccCCceeEEEE
Q 013475 400 CRSSELERKIKAYEQACIDVAF 421 (442)
Q Consensus 400 ~~~~~~~~~~~~~~~~v~~~~~ 421 (442)
..+++.+..+.......++|++
T Consensus 612 ~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 612 RLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TTTEEEEECCCTTCSSCCCCCB
T ss_pred ccCCCceEEeecCCCCCcEEEE
Confidence 8888877776543333444443
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.43 E-value=0.00022 Score=61.88 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=125.3
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc----C--CCceeEEEe---CCCCCEEEEEec-------
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF----H--SAAVNDVKW---SQQGLFVLSCGY------- 210 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----h--~~~v~~l~~---~~~~~~l~s~~~------- 210 (442)
--.+++|.+.++.++++.-..++|..|+...+....+ .+.+ . ...+..|.| .++++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3457899987466666665899999999853322223 3332 1 124689999 588777775432
Q ss_pred ------CCcEEEEECC---CCcEEEeeeC--------------CcceEEEEEccCCCCEEEEeeCC-CcEEEEECCCCce
Q 013475 211 ------DCSSRLVDVE---KGIETQSFRE--------------ELAVRVVKFHPENSNLFLSGGSK-GLLRLWDIRTGKV 266 (442)
Q Consensus 211 ------d~~v~vwd~~---~~~~~~~~~~--------------~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~ 266 (442)
+..|..||+. +++.+..... ......++..++| +..++++.. +.|..++.... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSC-C
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCC-E
Confidence 6779999999 7877665541 1248899999997 777888777 88888776533 3
Q ss_pred EEEec--c----CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec---c---ccceeee-EEec
Q 013475 267 AHEYI--Q----SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY---V---EAYTCPC-VRHH 333 (442)
Q Consensus 267 ~~~~~--~----~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~~~~~-~~~~ 333 (442)
+..+. . .....+.|+++|+|+.|++... .+.|..+|+...... .+.. . ....... +..-
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-------CCeEEEEcCCCCcce-eecccccCCcccccCcccccccc
Confidence 33221 1 1123678999999999999887 899999999853320 1111 1 1111222 2333
Q ss_pred CCCCeeEE-EeCCCeEEEeeCCC
Q 013475 334 PFDPYFVA-QSNGNYIAIFSSTP 355 (442)
Q Consensus 334 ~~~~~l~~-~~~~~~i~i~~~~~ 355 (442)
.+|+.+++ ....+.+.+.+.+.
T Consensus 243 ~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 243 VGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp ETTEEEEEEEETTEEEEEECSST
T ss_pred cCCEEEEEEcCCCCEEEEECCCC
Confidence 46776444 44556666666555
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.42 E-value=0.00055 Score=61.33 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=128.5
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE--Eeee----CCcceEEEEEccC---CCCEEEEeeCC-----CcE
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET--QSFR----EELAVRVVKFHPE---NSNLFLSGGSK-----GLL 256 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~----~~~~v~~~~~~~~---~~~~l~~~~~d-----g~i 256 (442)
.....|+|.|+|++++ +..+|.|++++ +++.. ..+. .......++|+|+ +..++++-... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998555 46679999998 44322 1111 2457899999997 43555544432 568
Q ss_pred EEEECCCCc-----eE-EEec---cCCCCEeEEEEeeCCCEEEeccCCCC------CcCCCCeEEEEeCCCCc-------
Q 013475 257 RLWDIRTGK-----VA-HEYI---QSLGPILDVEFTINGKQFVSSSDVSG------SNMSENSIVVWDVSREV------- 314 (442)
Q Consensus 257 ~iwd~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~------~~~~d~~i~iwd~~~~~------- 314 (442)
..|+...+. .+ ..+. ........+.|.+||.++++.+.... .....+.|.-++....-
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876432 11 1232 11123468999999987777543100 00113567777665310
Q ss_pred -----ccceeeccccceeeeEEecC-CCCeeEEEeCCCe--------EEEeeCCCCcc-------------cccceeEee
Q 013475 315 -----PLSKQVYVEAYTCPCVRHHP-FDPYFVAQSNGNY--------IAIFSSTPPFR-------------LDKFKRYES 367 (442)
Q Consensus 315 -----~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~--------i~i~~~~~~~~-------------~~~~~~~~~ 367 (442)
........ ......++|+| ++.++++-...+. |.+.......- ......+
T Consensus 188 ~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-- 264 (352)
T 2ism_A 188 GRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-- 264 (352)
T ss_dssp TCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred CCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--
Confidence 11111111 12466789999 5665555333332 44433211000 0000011
Q ss_pred cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee------eEeeeccCCceeEEEEcCCCCCEEEEee-CCC
Q 013475 368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL------ERKIKAYEQACIDVAFHPILPNIIGSCS-WNG 436 (442)
Q Consensus 368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg 436 (442)
.....+..++| .+|+++++.-..+.|...+++.... ...+..-...+.++++.||| .++++.. .+|
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~~~~~g 337 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-ALYVTTSNRDG 337 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-CEEEEECSTTT
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-cEEEEEeCCCC
Confidence 11223566777 5677777766777888887764321 12222224678999999999 5655543 344
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00021 Score=66.27 Aligned_cols=239 Identities=7% Similarity=0.033 Sum_probs=139.0
Q ss_pred ceeEEEeCC-CCCEEEEEec-CCcEEEEECCCCcEEEeeeC----CcceEEEEE-------ccCCCCEEEEeeCCC----
Q 013475 192 AVNDVKWSQ-QGLFVLSCGY-DCSSRLVDVEKGIETQSFRE----ELAVRVVKF-------HPENSNLFLSGGSKG---- 254 (442)
Q Consensus 192 ~v~~l~~~~-~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~~l~~~~~dg---- 254 (442)
....|+|.| +...|+.+.. .+.|++.|++++........ ......++| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 3445555544 46788999988776665542 235899999 999743555544432
Q ss_pred --cEEEEECCC-CceE-----EEeccCCCCEeEEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCC-------CCcc---
Q 013475 255 --LLRLWDIRT-GKVA-----HEYIQSLGPILDVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVS-------REVP--- 315 (442)
Q Consensus 255 --~i~iwd~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~-------~~~~--- 315 (442)
.|.+++... +... ..+... .....++++++ +.++++-.. ++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~-------~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYE-------KGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETT-------TTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECC-------CCEEEEEecccccccccCceeecc
Confidence 266776333 1221 122211 23457788994 555555555 8899999997 4432
Q ss_pred --------ccee-eccccceeeeEEecCCCCe-eEEEeCCCeEEEeeCCCCcc-cccceeEeec-c------------cc
Q 013475 316 --------LSKQ-VYVEAYTCPCVRHHPFDPY-FVAQSNGNYIAIFSSTPPFR-LDKFKRYESH-G------------VS 371 (442)
Q Consensus 316 --------~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~-~------------~~ 371 (442)
...+ ..........++++|++++ +++-+..+.|+.++.+.... +.....+.+. . .-
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1111 1222334568999999995 55556778899876544221 1000112111 0 01
Q ss_pred cCcE-EEEEc-------cCCCEEEEecCCCcEEEEecCCceeeEeeecc------------------------CCceeEE
Q 013475 372 GFPI-KCSFS-------LDGEKLVSGSSDGSIYFYNCRSSELERKIKAY------------------------EQACIDV 419 (442)
Q Consensus 372 ~~v~-~~~~s-------~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~ 419 (442)
..+. .++.. .+|.++++=..+..|+.++ .++. +.++-+. -.....|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 1234 34444 4667777767788899998 4553 3344321 0235689
Q ss_pred EEcCC-CCCEEEEeeCCCcEEEc
Q 013475 420 AFHPI-LPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 420 ~~~p~-~~~~l~s~~~dg~i~iw 441 (442)
+++++ + .++++=..+..|+.+
T Consensus 450 avd~~~g-~lyVaD~~N~rIrki 471 (496)
T 3kya_A 450 VYDDVKE-MFYVHDQVGHTIRTI 471 (496)
T ss_dssp EEETTTT-EEEEEETTTTEEEEE
T ss_pred EEECCCC-EEEEEeCCCCEEEEE
Confidence 99997 5 566665566777765
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.40 E-value=0.00059 Score=67.71 Aligned_cols=208 Identities=9% Similarity=-0.024 Sum_probs=126.1
Q ss_pred cccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccCCCceeEEEeCCCCCEEEEE-ecCCcEEEEE
Q 013475 142 CHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSC-GYDCSSRLVD 218 (442)
Q Consensus 142 ~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~d~~v~vwd 218 (442)
......+..|+|.+.+++++++-...+.|+.+++..... .....+.........|++...+..|+.+ ...+.|.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 334567789999987466666666778899998854211 2233333344567789998766555544 4578899999
Q ss_pred CCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCC-CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 219 VEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSK-GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 219 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
++.......+. .......|++.|.+..++++-..+ +.|...++........+.........|++++.+..|+.+..
T Consensus 500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 98665544444 445689999999754555554333 78999998644433333334457789999976666555542
Q ss_pred CCcCCCCeEEEEeCCCCcccceeecc-ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCC
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYV-EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPP 356 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 356 (442)
..+.|..+++............ .......+++. .+.++++-...+.|...+..++
T Consensus 578 ----~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 578 ----KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp ----TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ----CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCC
Confidence 1678999998654332222111 11122344443 2344444556677777775544
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.39 E-value=9.1e-05 Score=64.30 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=111.1
Q ss_pred CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE-ecc----CC--CCEeEEEE---eeCCCEEEeccC--CCC-
Q 013475 231 ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE-YIQ----SL--GPILDVEF---TINGKQFVSSSD--VSG- 297 (442)
Q Consensus 231 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~~~~---~~~~~~l~~~~~--~~~- 297 (442)
.....+++|++.+..++++.-..+.|..||...+..... +.. .. ..+..|.| .++++++++... .+.
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 334567899886545555555789999999875543333 221 11 13578999 588777775321 000
Q ss_pred ---CcCCCCeEEEEeCC---CCcccceeecc------------ccceeeeEEecCCCCeeEEEeCC-CeEEEeeCCCCcc
Q 013475 298 ---SNMSENSIVVWDVS---REVPLSKQVYV------------EAYTCPCVRHHPFDPYFVAQSNG-NYIAIFSSTPPFR 358 (442)
Q Consensus 298 ---~~~~d~~i~iwd~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~-~~i~i~~~~~~~~ 358 (442)
....+..|..||+. +++.+...... ....+..++..++|+..++++.. +.|..++.+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 00126789999999 66665444321 12358899999999999998888 8988888876522
Q ss_pred cccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 359 LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 359 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
..-.............+.++++|+|+.|++....|.|..+|+.+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 11101110111122356899999999888887799999999884
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.39 E-value=0.00067 Score=70.26 Aligned_cols=259 Identities=8% Similarity=0.067 Sum_probs=153.0
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-----------------------------------
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD----------------------------------- 211 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----------------------------------- 211 (442)
++.++|..+++.....++.+. -...+..++++|+.+.++.+..+
T Consensus 714 ~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS 792 (1158)
T ss_dssp SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence 456888887544333444444 44678888888876655443311
Q ss_pred --------------CcEEEEECCCCcEEEeee--CCcceEEEE---EccCCCCEEEEee----------CCCcEEEEECC
Q 013475 212 --------------CSSRLVDVEKGIETQSFR--EELAVRVVK---FHPENSNLFLSGG----------SKGLLRLWDIR 262 (442)
Q Consensus 212 --------------~~v~vwd~~~~~~~~~~~--~~~~v~~~~---~~~~~~~~l~~~~----------~dg~i~iwd~~ 262 (442)
+.|++.|..+.+.+..+. ....+.+++ |..+...+|++|. ..|.|++|++.
T Consensus 793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 246777877777776665 444555555 3333347888775 34789999987
Q ss_pred CCceEEEe-ccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEE
Q 013475 263 TGKVAHEY-IQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVA 341 (442)
Q Consensus 263 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (442)
.++..... ....++|++++-. +| +|+++- ...|++|++...+.+.. ....-..+..+.....+.++++
T Consensus 873 ~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i--------g~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~v 941 (1158)
T 3ei3_A 873 DGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI--------NSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILV 941 (1158)
T ss_dssp TTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE--------TTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEE
T ss_pred CCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc--------CCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEE
Confidence 54432211 2235788887744 45 555555 57999999987654331 1111111222233345778888
Q ss_pred EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc--------eeeEeeecc-
Q 013475 342 QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS--------ELERKIKAY- 412 (442)
Q Consensus 342 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~~- 412 (442)
|..-..+.++..+.. ...+..+.......+++++.|--+ ..++.+..+|.|.++..... ++...-.-|
T Consensus 942 gD~~~Sv~~~~y~~~--~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl 1018 (1158)
T 3ei3_A 942 GDLMRSVLLLAYKPM--EGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1018 (1158)
T ss_dssp EESSBCEEEEEEETT--TTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC
T ss_pred EEhhheEEEEEEEcC--CCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC
Confidence 888877777654322 122344444555667888887654 47788899999999876531 122211222
Q ss_pred CCceeEEE---EcCCC--------CCEEEEeeCCCcEEE
Q 013475 413 EQACIDVA---FHPIL--------PNIIGSCSWNGDVSV 440 (442)
Q Consensus 413 ~~~v~~~~---~~p~~--------~~~l~s~~~dg~i~i 440 (442)
...|+++. +.+.+ ...++-++.+|.|.+
T Consensus 1019 G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A 1019 GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEE
T ss_pred CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEE
Confidence 45677765 33322 135777778998865
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.37 E-value=0.00083 Score=65.05 Aligned_cols=235 Identities=8% Similarity=-0.110 Sum_probs=145.6
Q ss_pred EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe-cCCcEEEEECCCCcEEEeee-CCcceEEE
Q 013475 160 LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG-YDCSSRLVDVEKGIETQSFR-EELAVRVV 237 (442)
Q Consensus 160 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~-~~~~v~~~ 237 (442)
+|+.+ ..+.|+..+++.........+. .-..+..|+|.+.+..|+.+. .++.|..++++.......+. .......+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 34443 4568999998654322222222 235678999999666666554 47889999987655444444 23467889
Q ss_pred EEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc
Q 013475 238 KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS 317 (442)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 317 (442)
++...+.+++++-...+.|.+.++........+.........|++.|....|..+.. ...+.|...++......
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~-----g~~~~I~r~~~dG~~~~- 159 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW-----GGKPKIDRAAMDGSERT- 159 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC-----SSSCEEEEEETTSCSCE-
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC-----CCCCEEEEEeCCCCceE-
Confidence 998776677777777889999998654332223334456789999985545544432 01467888887654322
Q ss_pred eeeccccceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEE
Q 013475 318 KQVYVEAYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIY 396 (442)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 396 (442)
.+. ........+++++++..|.. -...+.|..++++..... .+.. .......+++.. +.++++-...+.|.
T Consensus 160 ~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~----v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 160 TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE----VIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIE 231 (628)
T ss_dssp EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEEE--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE----Eeec--cCCCceEEEEEC-CEEEEecCCCCEEE
Confidence 222 23345678999997665555 456689999999875441 1111 123356777764 44455555678899
Q ss_pred EEecCCceeeEeee
Q 013475 397 FYNCRSSELERKIK 410 (442)
Q Consensus 397 iwd~~~~~~~~~~~ 410 (442)
..|..+++....+.
T Consensus 232 ~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 232 RANKTSGQNRTIIQ 245 (628)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 99977775544443
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.26 E-value=1.3e-05 Score=78.83 Aligned_cols=217 Identities=8% Similarity=-0.032 Sum_probs=126.9
Q ss_pred cCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC----CceEEEeccCCCCEeEEEEeeC
Q 013475 210 YDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT----GKVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 210 ~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~~ 285 (442)
..+.|++.++...+....+.....+..++|++.+..++++-...+.|+.+++.. ......+.........|++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 346788889888776665555566788999987645555555678899999875 2222222222233466788754
Q ss_pred -CCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeC--CCeEEEeeCCCCcccccc
Q 013475 286 -GKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSN--GNYIAIFSSTPPFRLDKF 362 (442)
Q Consensus 286 -~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~i~~~~~~~~~~~~ 362 (442)
++++++-.. .+.|.++++..... ..+..........+++.|.+.+|+.... .+.|..+++........+
T Consensus 464 ~g~LY~tD~~-------~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSV-------LGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTT-------TSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEecc-------CCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 444455444 78999999875432 2222222334677889987766665443 267888887654322111
Q ss_pred eeEeecccccCcEEEEEccCCCEEE-EecCCCcEEEEecCCceeeEeee--ccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 363 KRYESHGVSGFPIKCSFSLDGEKLV-SGSSDGSIYFYNCRSSELERKIK--AYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 363 ~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
...-.....|+|++++..|+ +-...+.|.++++........+. ........|++..+ .++++....+.|.
T Consensus 536 -----~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~ 608 (699)
T 1n7d_A 536 -----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF 608 (699)
T ss_dssp -----CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEE
T ss_pred -----eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEE
Confidence 11123467899998765554 54567789999986533222222 11223445566544 3666655556666
Q ss_pred Ec
Q 013475 440 VY 441 (442)
Q Consensus 440 iw 441 (442)
.+
T Consensus 609 ~~ 610 (699)
T 1n7d_A 609 SA 610 (699)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.00083 Score=59.51 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=121.6
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc--ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ--KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG 222 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~ 222 (442)
...+.+|.|.+ +..++. +.++.|.. ..++.. ..+.....+...+..+.+..++..++.+ .++.|.. ..+.+
T Consensus 79 ~~~~~~i~~~~--~~~~~~-g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWIV-GEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSG 151 (327)
T ss_dssp CCEEEEEEEET--TEEEEE-EETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTT
T ss_pred CccEEEEEecC--CeEEEE-ECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCC
Confidence 44688999975 344444 45564433 222211 2211111233557788887776655544 4564432 22334
Q ss_pred cEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEE-EEC--CCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 223 IETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRL-WDI--RTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 223 ~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i-wd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
+.-.... ....+..+.+.+++ .+++++. +|.++. .|- .+-+.+. ......+..+.+.+++..++.+.
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~---- 223 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVN---- 223 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEET----
T ss_pred CCCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeC----
Confidence 4333333 35578899999875 6665554 455444 332 2222321 23446788899998888776655
Q ss_pred CcCCCCeEEEEeCCCCcccceeecc---ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYV---EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP 374 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v 374 (442)
+|.+.+.+...++........ ....+..+.+.+++..++++. ++.+. +..+.+.....+.. .......+
T Consensus 224 ----~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~--~~~~~~~~ 295 (327)
T 2xbg_A 224 ----GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVD--VKKVPSNF 295 (327)
T ss_dssp ----TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGG--GTTSSSCC
T ss_pred ----CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCc--cCCCCCCe
Confidence 677777643322222222111 223467788888777666654 55553 33343322211110 00112345
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEe
Q 013475 375 IKCSFSLDGEKLVSGSSDGSIYFYN 399 (442)
Q Consensus 375 ~~~~~s~~g~~l~~g~~dg~i~iwd 399 (442)
..+.|..++. +++++.+|.|.-++
T Consensus 296 ~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 296 YKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEEEEECCCc-eEEEcCCceEEEEc
Confidence 6788876554 55556688777665
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.25 E-value=0.0011 Score=64.20 Aligned_cols=230 Identities=10% Similarity=-0.012 Sum_probs=134.2
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec-CCcEEEEECCCCcE-EEeee-CCcceEEEEEccCC
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY-DCSSRLVDVEKGIE-TQSFR-EELAVRVVKFHPEN 243 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~-~~~~~-~~~~v~~~~~~~~~ 243 (442)
...|+..++............ ....+..|+|++.+..|+.+.. .+.|..++++.... ...+. .-.....+++...+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 457888887543212222222 3456789999997666666554 67888899876532 22233 33678999999876
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE 323 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 323 (442)
.+++++-...+.|.+.++........+.........|++.|.+.+|..+... ..+.|...++.... ...+....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-----~~~~I~r~~~dG~~-~~~l~~~~ 169 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSS-RFIIINSE 169 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-----SSCEEEEEETTSCS-CEEEECSS
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-----CCCEEEEEECCCCc-eEEEEeCC
Confidence 6777777778899999987543322333344556889999875555444320 14577777776432 22222223
Q ss_pred cceeeeEEecCCCCeeEE-EeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 324 AYTCPCVRHHPFDPYFVA-QSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
......+++++++..|.. -...+.|..++++......... .....+..+++..+ .++.+-..++.|...|..+
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-----~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-----GSLPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-----CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 345678999987655544 4566789999988754432211 01122446777655 4444555678899999877
Q ss_pred ceeeEee
Q 013475 403 SELERKI 409 (442)
Q Consensus 403 ~~~~~~~ 409 (442)
++....+
T Consensus 244 g~~~~~i 250 (619)
T 3s94_A 244 GEGLREI 250 (619)
T ss_dssp CCCCEEC
T ss_pred CcccEEE
Confidence 7654443
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.24 E-value=0.00031 Score=61.54 Aligned_cols=197 Identities=11% Similarity=0.136 Sum_probs=121.8
Q ss_pred CCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccC----CCC--EEEEee-C--CCcEEEEECC--CCceEEEe
Q 013475 202 GLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPE----NSN--LFLSGG-S--KGLLRLWDIR--TGKVAHEY 270 (442)
Q Consensus 202 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~l~~~~-~--dg~i~iwd~~--~~~~~~~~ 270 (442)
..+++.....+-+.+||+ +|+.++.+.. +.++.+..-|. |.. ++++.. . +++|.+|++. ++ .+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeec
Confidence 455666667788999999 8888888764 56777766652 111 333333 3 5789999773 33 34444
Q ss_pred cc------CC-CCEeEEEE--eeC-CC-EEEeccCCCCCcCCCCeEEEEeCCC---C----cccceeeccccceeeeEEe
Q 013475 271 IQ------SL-GPILDVEF--TIN-GK-QFVSSSDVSGSNMSENSIVVWDVSR---E----VPLSKQVYVEAYTCPCVRH 332 (442)
Q Consensus 271 ~~------~~-~~i~~~~~--~~~-~~-~l~~~~~~~~~~~~d~~i~iwd~~~---~----~~~~~~~~~~~~~~~~~~~ 332 (442)
.. .. ..+..+++ ++. ++ ++++... +|.+..|++.. + +.+.++.. ...+..+..
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-------~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Egcvv 187 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-------EGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAA 187 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-------SSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-------CCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEE
Confidence 21 11 45667777 553 44 5666665 89999999842 2 23333332 346778888
Q ss_pred cCCCCeeEEEeCCCeEEEeeCCCCc--ccccceeEeecccccCcEEEEE--ccCCC-EEEEec-CCCcEEEEecC-Ccee
Q 013475 333 HPFDPYFVAQSNGNYIAIFSSTPPF--RLDKFKRYESHGVSGFPIKCSF--SLDGE-KLVSGS-SDGSIYFYNCR-SSEL 405 (442)
Q Consensus 333 ~~~~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~l~~g~-~dg~i~iwd~~-~~~~ 405 (442)
.+....|+++-++..|..|+.+... ....+...........+-.+++ .++|+ ||++.+ .++++.|||.. +.+.
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 8989999999999888888755322 1111111111111123556666 45655 666555 67799999996 6677
Q ss_pred eEeee
Q 013475 406 ERKIK 410 (442)
Q Consensus 406 ~~~~~ 410 (442)
+..|.
T Consensus 268 vg~f~ 272 (355)
T 3amr_A 268 VADFR 272 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77764
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.15 E-value=0.00072 Score=59.09 Aligned_cols=234 Identities=12% Similarity=0.016 Sum_probs=116.5
Q ss_pred CCEEEEec-CC-----CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-----CcEEEEECCCCc---
Q 013475 158 AHLLASAG-MD-----QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-----CSSRLVDVEKGI--- 223 (442)
Q Consensus 158 ~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~--- 223 (442)
+.+++.|+ .+ ..+.+||..+.....+..+.........+. -++..++.|+.+ ..+.+||+.+++
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45666666 32 368888886554443333332111122222 256777777754 468999998876
Q ss_pred EEEeee--CC-cceEEEEEccCCCCEEEEeeCC-----CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCC
Q 013475 224 ETQSFR--EE-LAVRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDV 295 (442)
Q Consensus 224 ~~~~~~--~~-~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 295 (442)
-...-. .. .....+.+ + ..+++.|+.+ ..+.+||+.+.+-...-.............-+++.++.|+..
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCC
Confidence 332222 11 12222222 3 3777777654 358899988765322211111111112222377777777641
Q ss_pred CCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCCcccccceeEeeccc
Q 013475 296 SGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPPFRLDKFKRYESHGV 370 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~ 370 (442)
.. .....+.+||+.+..-.............++. .-++..++.|+.+ +.+.+||..+..-.. +.... ..
T Consensus 170 ~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p--~~ 243 (301)
T 2vpj_A 170 GL--NILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTSMT--TP 243 (301)
T ss_dssp SS--CBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-ECCCS--SC
T ss_pred CC--cccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEE-CCCCC--Cc
Confidence 10 01356889998875422211111111111122 2256667776653 568889887653211 11110 00
Q ss_pred ccCcEEEEEccCCCEEEEecCC-----CcEEEEecCCce
Q 013475 371 SGFPIKCSFSLDGEKLVSGSSD-----GSIYFYNCRSSE 404 (442)
Q Consensus 371 ~~~v~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~~ 404 (442)
..... +..-++++++.|+.+ ..|.+||..+.+
T Consensus 244 r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 244 RCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11111 222367777887765 357888887654
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.15 E-value=0.0069 Score=58.63 Aligned_cols=158 Identities=6% Similarity=-0.074 Sum_probs=104.2
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec--CCcEEEEECCCCc
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY--DCSSRLVDVEKGI 223 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--d~~v~vwd~~~~~ 223 (442)
.....|++...+++++++-...+.|.+.+++... ....+...-.....|++.|...+|+.... .+.|...+++...
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 4577899987756666776777899999985432 22222234456789999986556665543 4678888887665
Q ss_pred EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCC
Q 013475 224 ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303 (442)
Q Consensus 224 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~ 303 (442)
.......-.....+++.+++..++++-...+.|..+|+..... ..+.........+++.. +..+++-.. .+
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~-------~~ 228 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWS-------RR 228 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETT-------TT
T ss_pred eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCC-------CC
Confidence 5444455667899999998656666666778899999865433 33333334456777764 455555544 67
Q ss_pred eEEEEeCCCCc
Q 013475 304 SIVVWDVSREV 314 (442)
Q Consensus 304 ~i~iwd~~~~~ 314 (442)
.|...|..+++
T Consensus 229 ~I~~~dk~tg~ 239 (628)
T 4a0p_A 229 SIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTTCC
T ss_pred EEEEEECCCCC
Confidence 88888765543
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.14 E-value=0.0014 Score=58.60 Aligned_cols=228 Identities=9% Similarity=0.034 Sum_probs=121.8
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec---cCCCceeEEEeCCC---CCEEEEEec-C-----Cc
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN---FHSAAVNDVKWSQQ---GLFVLSCGY-D-----CS 213 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~---~~~l~s~~~-d-----~~ 213 (442)
..-..++|.|+ |+++++ ..+|.|.+++ ++....+..+. ........|+|+|+ +..|+.+.. . +.
T Consensus 31 ~~P~~ia~~pd-G~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPD-GGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTT-SCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCC-CeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 45679999999 776555 5569999988 33222222221 22456889999998 555555543 2 67
Q ss_pred EEEEECCCCc-----EE-EeeeC----CcceEEEEEccCCCCEEEEeeC-------------CCcEEEEECCCC------
Q 013475 214 SRLVDVEKGI-----ET-QSFRE----ELAVRVVKFHPENSNLFLSGGS-------------KGLLRLWDIRTG------ 264 (442)
Q Consensus 214 v~vwd~~~~~-----~~-~~~~~----~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~------ 264 (442)
|..|+...+. .+ ..+.. ......++|.|+| .++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 8888877542 11 11221 1234689999997 66665432 145666665420
Q ss_pred --------ceEEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCC--------eEEEEeCCCCc-------------
Q 013475 265 --------KVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSEN--------SIVVWDVSREV------------- 314 (442)
Q Consensus 265 --------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~--------~i~iwd~~~~~------------- 314 (442)
..+.. .++ .....++|++ ++.++++-.. .+ .|.+..-....
T Consensus 186 f~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g-------~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~ 256 (352)
T 2ism_A 186 FLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHG-------PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPR 256 (352)
T ss_dssp TTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEEC-------C------CCCEEEEECTTCBCCTTTCCSCCCCTT
T ss_pred ccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcC-------CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCC
Confidence 01111 122 2356788999 6665555432 22 23333221100
Q ss_pred -ccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc---ccceeEeecccccCcEEEEEccCCCEEEEec
Q 013475 315 -PLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL---DKFKRYESHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 315 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
...............+++ .++..+++....+.|...+++..... .....+. .....+..+++.|||.++++..
T Consensus 257 ~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 257 YRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 000001111123345555 45666666667778888777644321 0011111 1235678999999997776654
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.13 E-value=0.0092 Score=61.93 Aligned_cols=222 Identities=11% Similarity=0.095 Sum_probs=117.0
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCC------CCEEEEEec-CCcEEEEEC
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQ------GLFVLSCGY-DCSSRLVDV 219 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~------~~~l~s~~~-d~~v~vwd~ 219 (442)
.|.+.+.+ +.+++.++ ++.+.+++++.++........ -...|.|+++.+. +.+++.|.. |++|+|+++
T Consensus 515 ~I~~As~n---~~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCN---SSQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEEC---SSEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeC---CCEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 45555444 23455554 577888887654222222222 3568999999863 478999986 999999999
Q ss_pred CCCcEEEeeeC--CcceEEEEEcc-CCCCEEEEeeCCCcEEEEECC--CCceEEE--eccCCCCEeEEEEeeCCC-EEEe
Q 013475 220 EKGIETQSFRE--ELAVRVVKFHP-ENSNLFLSGGSKGLLRLWDIR--TGKVAHE--YIQSLGPILDVEFTINGK-QFVS 291 (442)
Q Consensus 220 ~~~~~~~~~~~--~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~--~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~ 291 (442)
.+.+.+....- .....++.+.. .+..+|..|-.||.+.-+.+. +++.... ......++.=..+...|. .+++
T Consensus 590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEE
T ss_pred CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEE
Confidence 98776654442 23445554432 234678899999987666553 4544321 222234554444443333 3333
Q ss_pred ccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeE-EecCC--CCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475 292 SSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCV-RHHPF--DPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH 368 (442)
Q Consensus 292 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 368 (442)
++ +....+|.-+.. +... ......+..+ .|+.. ..-++. ..++.++|..+...... ..+..
T Consensus 670 ~s--------~rp~liy~~~~~--l~~s-~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~-~~~~i--- 733 (1158)
T 3ei3_A 670 CS--------DRPTVIYSSNHK--LVFS-NVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKL-HIRTV--- 733 (1158)
T ss_dssp ES--------SSCEEEEESSSS--EEEE-EBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSE-EEEEE---
T ss_pred EC--------CCCEEEEEcCCc--eEEe-ccChHHhceEeccCcccCCCcEEE-EcCCceEEEEecccCCe-eEEEE---
Confidence 43 445555543322 1111 1111122222 23322 223443 34556888887654322 11211
Q ss_pred ccccCcEEEEEccCCCEEEEe
Q 013475 369 GVSGFPIKCSFSLDGEKLVSG 389 (442)
Q Consensus 369 ~~~~~v~~~~~s~~g~~l~~g 389 (442)
.....+..++++|+.+.++.+
T Consensus 734 pL~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 734 PLYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp ECSSEEEEEEEEGGGTEEEEE
T ss_pred eCCCCceEEEEcCCCCEEEEE
Confidence 122446778888876655443
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.12 E-value=0.00077 Score=59.10 Aligned_cols=188 Identities=13% Similarity=0.205 Sum_probs=116.1
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC----CCE--EEeccCCCCCcCC--CCeEEEEeCCC-Cc
Q 013475 244 SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN----GKQ--FVSSSDVSGSNMS--ENSIVVWDVSR-EV 314 (442)
Q Consensus 244 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--l~~~~~~~~~~~~--d~~i~iwd~~~-~~ 314 (442)
..+++.....+-+.+||+ +++.++.+.. +.++.+..-++ |+. ++.++. .. +++|.+|++.. ..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~-----R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASN-----RSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEE-----CSTTCCEEEEEEECTTTC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeC-----CCCCCCeEEEEEECCCCC
Confidence 356777777889999999 8888888754 56777777663 222 333332 12 47899997742 22
Q ss_pred ccceeec-----ccc-ceeeeEEe--cCC-CC-eeEEEeCCCeEEEeeCCCC----cccccceeEeecccccCcEEEEEc
Q 013475 315 PLSKQVY-----VEA-YTCPCVRH--HPF-DP-YFVAQSNGNYIAIFSSTPP----FRLDKFKRYESHGVSGFPIKCSFS 380 (442)
Q Consensus 315 ~~~~~~~-----~~~-~~~~~~~~--~~~-~~-~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s 380 (442)
.+..... ... .....+++ ++. +. ++++...++.+..|++... .....++.+.. ...+-.|...
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvD 188 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAAD 188 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEE
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEc
Confidence 2333311 111 34555666 664 43 6777888899999888432 12222233332 3457788999
Q ss_pred cCCCEEEEecCCCcEEEEecC-----CceeeEeee-cc-CCceeEEEE--cCCCC-CEEEEeeCCCcEEEcC
Q 013475 381 LDGEKLVSGSSDGSIYFYNCR-----SSELERKIK-AY-EQACIDVAF--HPILP-NIIGSCSWNGDVSVYE 442 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~--~p~~~-~~l~s~~~dg~i~iwd 442 (442)
+...+|+.+-++.-|..++.+ +++.+..+. ++ ...+..|++ .+++. .+|+++-.++++.|||
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 988999999998777777754 345555542 22 346888888 45542 3555554667788775
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.12 E-value=0.0045 Score=55.39 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=125.0
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee---ccCCCceeEEEeCCC---CCEEEEEec----C---
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL---NFHSAAVNDVKWSQQ---GLFVLSCGY----D--- 211 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~~~~---~~~l~s~~~----d--- 211 (442)
-..-..|+|.|+ |+++++ ..+|.|++++. ++. ..+..+ .........|+|+|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pd-G~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEET-TEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCC-CeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999 775554 55699999873 222 222222 112356889999997 555555443 3
Q ss_pred -CcEEEEECCCC--c-----EE-Eeee--CCcceEEEEEccCCCCEEEEeeC-------------CCcEEEEECCCC---
Q 013475 212 -CSSRLVDVEKG--I-----ET-QSFR--EELAVRVVKFHPENSNLFLSGGS-------------KGLLRLWDIRTG--- 264 (442)
Q Consensus 212 -~~v~vwd~~~~--~-----~~-~~~~--~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~--- 264 (442)
+.|..|+.... . .+ ..+. .......+.|.|+| .++++.+. .|.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777877654 1 11 1122 12235679999997 66665432 245655555321
Q ss_pred ------ceEEEeccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCC--------c-----c-cceeec-c
Q 013475 265 ------KVAHEYIQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSRE--------V-----P-LSKQVY-V 322 (442)
Q Consensus 265 ------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~--------~-----~-~~~~~~-~ 322 (442)
..+.. .++ .....++|++ +|.++++-.... .-..|.+..-... . . ...... .
T Consensus 183 ~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~----~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 183 DNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPV----GHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp TSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSS----SCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCC----CCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 01111 223 2346799999 666665543200 0122433321110 0 0 000111 1
Q ss_pred ccceeeeEEec-------CCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec
Q 013475 323 EAYTCPCVRHH-------PFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 323 ~~~~~~~~~~~-------~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
.......+.+. .++.++++....+.|..+++...........+. ......+..+++.|||.++++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 12345566663 466677777777888888887532221111111 11235678899999997666654
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.09 E-value=0.0012 Score=57.73 Aligned_cols=236 Identities=16% Similarity=0.053 Sum_probs=117.7
Q ss_pred CCEEEEecC--CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC----CcEEEEECCCCcEEEeee--
Q 013475 158 AHLLASAGM--DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD----CSSRLVDVEKGIETQSFR-- 229 (442)
Q Consensus 158 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~-- 229 (442)
+.+++.|+. ...+.+||..+.....+..+.........+.+ ++..++.|+.+ ..+.+||..+++-...-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 345555654 35788899866544444333322222222222 66677777754 678899998875443322
Q ss_pred CC-cceEEEEEccCCCCEEEEeeCC------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCc--C
Q 013475 230 EE-LAVRVVKFHPENSNLFLSGGSK------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSN--M 300 (442)
Q Consensus 230 ~~-~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~--~ 300 (442)
.. .....+.+ + ..+++.|+.+ ..+.+||+.+.+-...-.............-+++.++.|+...... .
T Consensus 90 ~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred ccccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence 11 11222222 3 3677777765 4689999987653322111111111112223677777776411000 0
Q ss_pred CCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCCcccccceeEeecccccCcE
Q 013475 301 SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375 (442)
Q Consensus 301 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 375 (442)
.-..+.+||+.+..-..............+... +++.++.|+.+ ..+.+||..+..-.. +..+. .......
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p--~~r~~~~ 242 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSPMP--WKGVTVK 242 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEE-CCCCS--CCBSCCE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-CCCCC--CCcccee
Confidence 035688999987642211111111111122222 56666666543 467888887653211 11111 0111112
Q ss_pred EEEEccCCCEEEEecCC-----CcEEEEecCCce
Q 013475 376 KCSFSLDGEKLVSGSSD-----GSIYFYNCRSSE 404 (442)
Q Consensus 376 ~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~~ 404 (442)
.+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2222 67788888754 468899987753
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.08 E-value=0.0053 Score=54.88 Aligned_cols=240 Identities=15% Similarity=0.090 Sum_probs=129.7
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCc-EEEeee----CCcceEEEEEccC---CCCEEEEeeC---C----Cc
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGI-ETQSFR----EELAVRVVKFHPE---NSNLFLSGGS---K----GL 255 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~~l~~~~~---d----g~ 255 (442)
.....|+|.|++++++ +..+|.|++++ .+++ .+..+. .......|+|+|+ +..++++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4567999999997544 56679999997 4454 222211 2456899999997 4355554432 3 56
Q ss_pred EEEEECCCC--c-----eE-EEecc-CCCCEeEEEEeeCCCEEEeccCCCC------CcCCCCeEEEEeCCCCcc-----
Q 013475 256 LRLWDIRTG--K-----VA-HEYIQ-SLGPILDVEFTINGKQFVSSSDVSG------SNMSENSIVVWDVSREVP----- 315 (442)
Q Consensus 256 i~iwd~~~~--~-----~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~------~~~~d~~i~iwd~~~~~~----- 315 (442)
|..|+.... . .+ ..+.. .......|.|.|||.++++.+.... .....+.|..++......
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777876543 1 11 11221 1123467999999988877543100 001135666666543210
Q ss_pred -cceeeccccceeeeEEecC-CCCeeEEEeCC---CeEEEeeCCCCcc---------cccc--eeEeecccccCcEEEEE
Q 013475 316 -LSKQVYVEAYTCPCVRHHP-FDPYFVAQSNG---NYIAIFSSTPPFR---------LDKF--KRYESHGVSGFPIKCSF 379 (442)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~~i~i~~~~~~~~---------~~~~--~~~~~~~~~~~v~~~~~ 379 (442)
...+..........++|++ ++.++++-... ..|.+...-...- ...+ ...........+..++|
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 0011111122456799999 56655553222 2344433211000 0000 00111011234667787
Q ss_pred -------ccCCCEEEEecCCCcEEEEecCCc-eee--Eeee-ccCCceeEEEEcCCCCCEEEEee
Q 013475 380 -------SLDGEKLVSGSSDGSIYFYNCRSS-ELE--RKIK-AYEQACIDVAFHPILPNIIGSCS 433 (442)
Q Consensus 380 -------s~~g~~l~~g~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~~~~~p~~~~~l~s~~ 433 (442)
..+|+++++.-..+.|...++... +.. ..+. .....+.++++.||| .++++..
T Consensus 267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~~ 330 (354)
T 3a9g_A 267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILISTS 330 (354)
T ss_dssp CCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEEC
T ss_pred ECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEEe
Confidence 357878887777888999988753 322 2222 224578999999999 5666654
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.04 E-value=0.0047 Score=55.25 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=128.8
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe---e-----eCCcceEEEEEccC---CCCEEEEeeC-------
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS---F-----REELAVRVVKFHPE---NSNLFLSGGS------- 252 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~-----~~~~~v~~~~~~~~---~~~~l~~~~~------- 252 (442)
.....|+|.|+++.|+++...|.|++++.. +..... + ........++|+|+ +..++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456799999999834455668999999853 322111 1 12346789999995 4355554332
Q ss_pred CCcEEEEECCCC--c--eEEEe-cc------CCCCEeEEEEeeCCCEEEeccCCCC------CcCCCCeEEEEeCCCCc-
Q 013475 253 KGLLRLWDIRTG--K--VAHEY-IQ------SLGPILDVEFTINGKQFVSSSDVSG------SNMSENSIVVWDVSREV- 314 (442)
Q Consensus 253 dg~i~iwd~~~~--~--~~~~~-~~------~~~~i~~~~~~~~~~~l~~~~~~~~------~~~~d~~i~iwd~~~~~- 314 (442)
...|..|++... + ....+ .. ....-..|.|.|||.++++.+.... .....+.|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766432 1 11111 11 1112367999999977776543100 00113567777765321
Q ss_pred -----------ccceeeccccceeeeEEecC-CCCeeEEEeC-C--CeEEEeeCCCCcc--------------c------
Q 013475 315 -----------PLSKQVYVEAYTCPCVRHHP-FDPYFVAQSN-G--NYIAIFSSTPPFR--------------L------ 359 (442)
Q Consensus 315 -----------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~--~~i~i~~~~~~~~--------------~------ 359 (442)
....... .......++|++ ++.++++-.. + ..|.+.......- +
T Consensus 177 ~~npf~~~~~~~~~i~a~-G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSY-GIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEE-CCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEE-cCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1111111 223467899999 5555554222 1 1333221111000 0
Q ss_pred --ccc-eeEeecccccCcEEEEEcc-------CCCEEEEecCCCcEEEEecCCceeeEe--e-eccCCceeEEEEcCCCC
Q 013475 360 --DKF-KRYESHGVSGFPIKCSFSL-------DGEKLVSGSSDGSIYFYNCRSSELERK--I-KAYEQACIDVAFHPILP 426 (442)
Q Consensus 360 --~~~-~~~~~~~~~~~v~~~~~s~-------~g~~l~~g~~dg~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~~p~~~ 426 (442)
..+ .......+...+..+.|.. +|+++++.-..+.|...++..++.+.. + ......+.++++.|+|
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG- 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG- 334 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS-
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC-
Confidence 000 0000001122456677753 577888777788888888876554332 2 1223579999999999
Q ss_pred CEEEEee-CCCcE
Q 013475 427 NIIGSCS-WNGDV 438 (442)
Q Consensus 427 ~~l~s~~-~dg~i 438 (442)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 5655433 45654
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.02 E-value=0.0019 Score=56.39 Aligned_cols=237 Identities=12% Similarity=0.098 Sum_probs=114.2
Q ss_pred CCEEEEecCC----CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-----CcEEEEECCCCcEEEee
Q 013475 158 AHLLASAGMD----QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-----CSSRLVDVEKGIETQSF 228 (442)
Q Consensus 158 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~ 228 (442)
+.+++.|+.+ ..+.+||..+.....+..+......-..+.+ ++..++.|+.+ ..+.+||..+.+-...-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 3678888865543333222211111122222 66677777754 35888998877543332
Q ss_pred e--CCcceEEEEEccCCCCEEEEeeCCC-----cEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCC
Q 013475 229 R--EELAVRVVKFHPENSNLFLSGGSKG-----LLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMS 301 (442)
Q Consensus 229 ~--~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~ 301 (442)
. ....-.+++.. + ..+++.|+.++ .+.+||+.+.+-...-.............-+++.++.|+........
T Consensus 94 ~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcc
Confidence 2 11111222222 3 36777777553 47889988765332211111111111222367777777641110001
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCCcccccceeEeecccccCcEE
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIK 376 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 376 (442)
-..+.+||+.+..-.............++.. -++..++.|+.+ +.+.+||..+..-. ..........-..
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~----~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR----QVADMNMCRRNAG 246 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEE----EECCCSSCCBSCE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEe----eCCCCCCccccCe
Confidence 2468899988754221111111111111222 256677776653 46888888764321 1111111000111
Q ss_pred EEEccCCCEEEEecCCC-----cEEEEecCCce
Q 013475 377 CSFSLDGEKLVSGSSDG-----SIYFYNCRSSE 404 (442)
Q Consensus 377 ~~~s~~g~~l~~g~~dg-----~i~iwd~~~~~ 404 (442)
+..-++++++.|+.++ .+.+||..+.+
T Consensus 247 -~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 247 -VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 2223677888887653 48899987754
No 313
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.00 E-value=0.00069 Score=69.72 Aligned_cols=244 Identities=11% Similarity=0.131 Sum_probs=148.1
Q ss_pred CCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCE
Q 013475 167 DQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNL 246 (442)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 246 (442)
..+|.|-|+.++.....+-+. - -+.-.+|..+.|+.-. ..++.|+|+++...++.+.....|..-.|-... .+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~-A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS-A----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TV 119 (1630)
T ss_pred CceEEEEECCCCCCccccccc-c----hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC-ee
Confidence 347888898665433222232 1 1233577776666554 788999999999999888877778888887653 33
Q ss_pred EEEeeCCCcEEEEECCC-CceEEEeccC----CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeec
Q 013475 247 FLSGGSKGLLRLWDIRT-GKVAHEYIQS----LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVY 321 (442)
Q Consensus 247 l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 321 (442)
-+++ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++..+-....+.-.|.+.+|..+.+.. +...
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~ie 195 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIE 195 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhh
Confidence 3333 34799999964 2344444433 356777788899999887665434444579999999876432 1222
Q ss_pred cccceeeeEEec--CCCCeeEE-E---eCCCeEEEeeCCCC-cccccce------eEeecccccCcEEEEEccCCCEEEE
Q 013475 322 VEAYTCPCVRHH--PFDPYFVA-Q---SNGNYIAIFSSTPP-FRLDKFK------RYESHGVSGFPIKCSFSLDGEKLVS 388 (442)
Q Consensus 322 ~~~~~~~~~~~~--~~~~~l~~-~---~~~~~i~i~~~~~~-~~~~~~~------~~~~~~~~~~v~~~~~s~~g~~l~~ 388 (442)
.|......+... +....+++ + ..++.+.|.++... .....+. .+........+..+..|+....++.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 222111111111 11122222 2 22478888887543 1111110 1111223566788999998889999
Q ss_pred ecCCCcEEEEecCCceeeEeeeccCCceeEEEE
Q 013475 389 GSSDGSIYFYNCRSSELERKIKAYEQACIDVAF 421 (442)
Q Consensus 389 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 421 (442)
-+.-|.|++||+.++.++..-+-....|...+-
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEecc
Confidence 999999999999999887655444444444333
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.96 E-value=0.0035 Score=55.62 Aligned_cols=183 Identities=9% Similarity=0.111 Sum_probs=105.4
Q ss_pred cCCcEEEEECCCC-cEEEeee--C------CcceEEEEEcc--CCCCEEEEe-eC--CCcEEEEECCCCc----eEEEec
Q 013475 210 YDCSSRLVDVEKG-IETQSFR--E------ELAVRVVKFHP--ENSNLFLSG-GS--KGLLRLWDIRTGK----VAHEYI 271 (442)
Q Consensus 210 ~d~~v~vwd~~~~-~~~~~~~--~------~~~v~~~~~~~--~~~~~l~~~-~~--dg~i~iwd~~~~~----~~~~~~ 271 (442)
.+|.|.++|.++. .....+. . ......+.+.+ ++..+|+++ .. +..|.+|++.... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998742 1122222 1 23677788766 343344444 33 4578888776432 233343
Q ss_pred cC-CCCEeEEEEeeCCCEEEeccCCCCC----------cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeE
Q 013475 272 QS-LGPILDVEFTINGKQFVSSSDVSGS----------NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 272 ~~-~~~i~~~~~~~~~~~l~~~~~~~~~----------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (442)
+. ....+++.+.++|.++++....... ....+.|..+|.. .+. .....-.....++|+|+++.+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~~~-~~~~~l~~pNGia~spDg~~lY 236 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---DVR-VVAEGFDFANGINISPDGKYVY 236 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---CCE-EEEEEESSEEEEEECTTSSEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---eEE-EeecCCcccCcceECCCCCEEE
Confidence 32 2467899999999987775422110 1123566666653 122 2222234567899999998776
Q ss_pred EEe-CCCeEEEeeCCCCcccccceeEeecccccCcEEEEEcc-CCCEEEEecCC-CcEEEEe
Q 013475 341 AQS-NGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSL-DGEKLVSGSSD-GSIYFYN 399 (442)
Q Consensus 341 ~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d-g~i~iwd 399 (442)
++. ..+.|..|++.....+...+.+. ..+.+-.+++.. +|++.+++..+ +.|..|+
T Consensus 237 vadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 237 IAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 654 57899999987543332222331 135567889999 59887766433 3344444
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.91 E-value=0.0028 Score=55.52 Aligned_cols=234 Identities=11% Similarity=-0.015 Sum_probs=114.6
Q ss_pred CCEEEEecCC----CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec----C-----CcEEEEECCCCcE
Q 013475 158 AHLLASAGMD----QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY----D-----CSSRLVDVEKGIE 224 (442)
Q Consensus 158 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d-----~~v~vwd~~~~~~ 224 (442)
+.+++.|+.+ ..+.+||..+.....+..+....... ++... ++.+++.|+. + ..+.+||+.+.+-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 5666666632 36888888655444333332111111 22222 5667777765 2 4688999887754
Q ss_pred EEeee--C-CcceEEEEEccCCCCEEEEeeCC-----CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 225 TQSFR--E-ELAVRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 225 ~~~~~--~-~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
...-. . ......+.+ + ..+++.|+.+ ..+.+||+.+.+-...-.............-+++.++.|+...
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCC
Confidence 33222 1 112222222 3 3677777643 3588999887653222111111111111222677777776411
Q ss_pred CCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCCcccccceeEeecccc
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPPFRLDKFKRYESHGVS 371 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~ 371 (442)
. .....+.+||+.+..-.............++... ++..++.|+.+ ..+.+||..+..-.. +..+. ...
T Consensus 180 ~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p--~~r 253 (308)
T 1zgk_A 180 T--NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMK--HRR 253 (308)
T ss_dssp S--CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCS--SCC
T ss_pred C--CcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCC--CCc
Confidence 1 0135688999877542211111111111112222 56677776654 568888887653211 11111 001
Q ss_pred cCcEEEEEccCCCEEEEecCC-----CcEEEEecCCce
Q 013475 372 GFPIKCSFSLDGEKLVSGSSD-----GSIYFYNCRSSE 404 (442)
Q Consensus 372 ~~v~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~~ 404 (442)
... .++. -++++++.|+.+ ..+.+||..+.+
T Consensus 254 ~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 111 1222 267777887754 357888887654
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.88 E-value=0.0056 Score=54.76 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=120.9
Q ss_pred ccceEEEEeeCCCCC-EEEEecCCCcEEEEEcccCCcceeeee----ccCCCceeEEEeCCC---CCEEEEEec------
Q 013475 145 TKAVNSINWSPTHAH-LLASAGMDQSICIWNVWSRDQKLARVL----NFHSAAVNDVKWSQQ---GLFVLSCGY------ 210 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~h~~~v~~l~~~~~---~~~l~s~~~------ 210 (442)
-..-..|+|.|+ |+ ++++ ...|.|++++........+..+ .........|+|+|+ +.+|+.+..
T Consensus 17 l~~P~~i~~~pd-G~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPD-NHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECST-TCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCC-CCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 345689999999 77 5554 5679999988421100111111 112346789999996 445554432
Q ss_pred --CCcEEEEECCCC--c--EEE-eee-------CCcceEEEEEccCCCCEEEEeeC-------------CCcEEEEECCC
Q 013475 211 --DCSSRLVDVEKG--I--ETQ-SFR-------EELAVRVVKFHPENSNLFLSGGS-------------KGLLRLWDIRT 263 (442)
Q Consensus 211 --d~~v~vwd~~~~--~--~~~-~~~-------~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~ 263 (442)
...|..|++... . ... .+. .......+.|.|+| .++++.+. .|.|.-++...
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666533 1 111 111 11224679999997 55555433 24566666542
Q ss_pred Cc------------eEEEe-ccCCCCEeEEEEee-CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc--------------
Q 013475 264 GK------------VAHEY-IQSLGPILDVEFTI-NGKQFVSSSDVSGSNMSENSIVVWDVSREVP-------------- 315 (442)
Q Consensus 264 ~~------------~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~-------------- 315 (442)
.- ....+ .++ .....++|++ +|.++++-.. .++.=.|.-+..+..
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g------~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHG------PRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEEC------SBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecC------CCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 10 11111 122 3457899999 5655544321 011112221111100
Q ss_pred --c-------------ceeeccccceeeeEEecC-------CCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccC
Q 013475 316 --L-------------SKQVYVEAYTCPCVRHHP-------FDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 316 --~-------------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
+ .............+.+.. ++.++++....+.|..++++....... ..+. ......
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~-~~~~~r 324 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED-GRIL-TDRGQR 324 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE-EEES-GGGCCC
T ss_pred CccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee-EEcc-cCCCCc
Confidence 0 000001112344566653 466777777778888887765322111 1111 112246
Q ss_pred cEEEEEccCCCEEEEec-CCCcE
Q 013475 374 PIKCSFSLDGEKLVSGS-SDGSI 395 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~-~dg~i 395 (442)
+..+++.|||.++++.. .+|.|
T Consensus 325 p~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 325 IRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEEEECTTSCEEEEECSTTEEE
T ss_pred eeEEEECCCCcEEEEEeCCCCEE
Confidence 88999999998666543 34533
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.82 E-value=0.0074 Score=52.98 Aligned_cols=233 Identities=11% Similarity=0.000 Sum_probs=112.9
Q ss_pred EEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec----C-------CcEEEEECCCCcEEEee
Q 013475 160 LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY----D-------CSSRLVDVEKGIETQSF 228 (442)
Q Consensus 160 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d-------~~v~vwd~~~~~~~~~~ 228 (442)
+++.|+ ..+.+||..+..... ..+..............++..++.|+. + ..+.+||..+++-...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 579999986664443 223222223333333457778888874 1 12778898877543322
Q ss_pred e--CCcceEEEEEccCCCCEEEEeeCC--------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 229 R--EELAVRVVKFHPENSNLFLSGGSK--------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 229 ~--~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
. ....-.+++.. + ..+++.|+.+ ..+.+||+.+.+-...-.............-+++.++.|+... .
T Consensus 84 ~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS-D 160 (315)
T ss_dssp CBSSCEESCEEEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT-T
T ss_pred CCCcchhceeEEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC-C
Confidence 1 11111122222 3 4677777742 4589999987643221111111111222234677777776411 1
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCC-----eEEEeeCCCCcccccceeEeecccccC
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGN-----YIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
...-..+.+||+.+..-.............++. .-+++.++.|+.++ .+.+||..+..-. ..........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~ 235 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA----PFEAFPQERS 235 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEE----EECCCSSCCB
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEE----ECCCCCCccc
Confidence 111357899998875422111111111111122 22566777766543 5788888765221 1111111111
Q ss_pred cEEEEEccCCCEEEEecCCC--------------cEEEEecCCce
Q 013475 374 PIKCSFSLDGEKLVSGSSDG--------------SIYFYNCRSSE 404 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~dg--------------~i~iwd~~~~~ 404 (442)
-..++ .-++++++.|+.++ .+.+||..+.+
T Consensus 236 ~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 236 SLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp SCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 11122 23667777776532 36788887654
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.69 E-value=0.033 Score=51.60 Aligned_cols=105 Identities=10% Similarity=0.160 Sum_probs=61.7
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc------CCCceeEEEeCCC---CCEEEEEec-----
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF------HSAAVNDVKWSQQ---GLFVLSCGY----- 210 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------h~~~v~~l~~~~~---~~~l~s~~~----- 210 (442)
-..-+.|+|.|+ |+++++-...+.|++++..++....+..+.. .......|+|+|+ +.+|+.+..
T Consensus 26 l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 345679999999 8877765544578888754333333333321 2456779999995 555555442
Q ss_pred --------CCcEEEEECCCC-------cEEE-eee--CCcceEEEEEccCCCCEEEEee
Q 013475 211 --------DCSSRLVDVEKG-------IETQ-SFR--EELAVRVVKFHPENSNLFLSGG 251 (442)
Q Consensus 211 --------d~~v~vwd~~~~-------~~~~-~~~--~~~~v~~~~~~~~~~~~l~~~~ 251 (442)
...|.-|++..+ +.+. .+. .......|+|.|+| .++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 235666665432 1111 122 23457899999997 5555543
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.67 E-value=0.0075 Score=52.54 Aligned_cols=192 Identities=9% Similarity=0.025 Sum_probs=96.9
Q ss_pred CCEEEEecCC-----CcEEEEEcccCC---cceeeeeccCCCceeEEEeCCCCCEEEEEecC-----CcEEEEECCCCcE
Q 013475 158 AHLLASAGMD-----QSICIWNVWSRD---QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-----CSSRLVDVEKGIE 224 (442)
Q Consensus 158 ~~~l~s~~~d-----g~i~iwd~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~ 224 (442)
+++++.|+.+ ..+.+||..+.. ...+..+.........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 6777777755 468899987665 4444333322222222222 56777777654 3688999887754
Q ss_pred EEeee--CCcceEEEEEccCCCCEEEEeeCC-----CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCC
Q 013475 225 TQSFR--EELAVRVVKFHPENSNLFLSGGSK-----GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297 (442)
Q Consensus 225 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 297 (442)
...-. ....-.+++.. + ..+++.|+.+ ..+.+||+.+.+-...-.............-+++.++.|+....
T Consensus 141 ~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 218 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA-S-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT 218 (301)
T ss_dssp EEEEECSSCCBSCEEEEE-T-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred EECCCCCCCcccceEEEE-C-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCC
Confidence 43322 11111122222 3 3677777754 45899999876533221111111111222236777777765110
Q ss_pred CcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCC
Q 013475 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPP 356 (442)
Q Consensus 298 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~ 356 (442)
.....+.+||+.+.+-..............+. .-+++.++.|+.+ ..+.+||..+.
T Consensus 219 --~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 219 --AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp --SBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred --cccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 01357899999875422211111111111111 2255666666544 35666776653
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.57 E-value=0.022 Score=50.04 Aligned_cols=235 Identities=10% Similarity=0.013 Sum_probs=110.8
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec----CC-------cEEEEECCCCcEEEe
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY----DC-------SSRLVDVEKGIETQS 227 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d~-------~v~vwd~~~~~~~~~ 227 (442)
.+++.|+. .+.+||..+..... ..+..............++..++.|+. ++ .+.+||..+.+-...
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 34455553 47888986654433 222211122222333456778888873 12 277888887654332
Q ss_pred ee--CCcceEEEEEccCCCCEEEEeeCC-------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 228 FR--EELAVRVVKFHPENSNLFLSGGSK-------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 228 ~~--~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
-. ....-.+++.. + ..+++.|+.+ ..+.+||+.+.+-...-..............+++.++.|+... .
T Consensus 94 ~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~ 170 (318)
T 2woz_A 94 PPLPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTD-D 170 (318)
T ss_dssp SCBSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEES-S
T ss_pred CCCCccccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCC-C
Confidence 22 11111222222 3 3677777754 2488899887653322111111111112224677777776310 0
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCCcccccceeEeecccccC
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPPFRLDKFKRYESHGVSGF 373 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (442)
...-..+.+||+.+.+-.............++.. -+++.++.|+.+ ..+.+||..+..-.. +..... ....
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~--~r~~ 246 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTEFPQ--ERSS 246 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCCCSS--CCBS
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCCCCC--cccc
Confidence 0113468999998754221111111111112222 256666666543 357788877643211 111110 0011
Q ss_pred cEEEEEccCCCEEEEecCC--------------CcEEEEecCCcee
Q 013475 374 PIKCSFSLDGEKLVSGSSD--------------GSIYFYNCRSSEL 405 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~d--------------g~i~iwd~~~~~~ 405 (442)
. . +..-++++++.|+.+ ..+.+||..+.+-
T Consensus 247 ~-~-~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 247 I-S-LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp C-E-EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred e-E-EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 1 1 222366777777653 3578888877543
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.57 E-value=0.0082 Score=52.32 Aligned_cols=192 Identities=10% Similarity=0.056 Sum_probs=95.6
Q ss_pred CCEEEEecCC-----CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCC-----cEEEEECCCCcEEEe
Q 013475 158 AHLLASAGMD-----QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDC-----SSRLVDVEKGIETQS 227 (442)
Q Consensus 158 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~ 227 (442)
+++++.|+.+ ..+.+||..+.....+..+.........+.+ +++.++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 6777787754 3588899866544444333322222222222 667777777653 577889887754433
Q ss_pred ee--CCcceEEEEEccCCCCEEEEeeCC-------CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCC
Q 013475 228 FR--EELAVRVVKFHPENSNLFLSGGSK-------GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGS 298 (442)
Q Consensus 228 ~~--~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 298 (442)
-. ....-.+++.. + ..+++.|+.+ ..+.+||+.+.+-...-.............-+++.++.|+...
T Consensus 140 ~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-- 215 (302)
T 2xn4_A 140 APMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDG-- 215 (302)
T ss_dssp CCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSS--
T ss_pred CCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCC--
Confidence 22 11111222222 3 3677777643 3588999987653322111111111112223677777776411
Q ss_pred cCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCC
Q 013475 299 NMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPP 356 (442)
Q Consensus 299 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~ 356 (442)
......+.+||+.+.+-...........-..+ ..-++..++.|+.+ ..+.+||..+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV-CAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCccccCeE-EEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 01124788999987542211111111111111 12255666666544 24677776653
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.56 E-value=0.037 Score=55.19 Aligned_cols=230 Identities=9% Similarity=0.047 Sum_probs=124.6
Q ss_pred CCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceE
Q 013475 190 SAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVA 267 (442)
Q Consensus 190 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (442)
...|.+|.-..+|. |-.|..+| +..||-.+.+...... ....|.++....+| .|..|+.+| +..||..+.+..
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~ 95 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYE 95 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEEC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEE
Confidence 46789998887774 44566666 6667743211111001 23468888777654 555666655 789998776432
Q ss_pred EEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee---ccccceeeeEEecCCCCeeEEEeC
Q 013475 268 HEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV---YVEAYTCPCVRHHPFDPYFVAQSN 344 (442)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~ 344 (442)
.........|.++.. .+| .|..++. + .|..||..+.+...... ......+.++....++...+ ++.
T Consensus 96 ~~~~~~~~~i~~i~~-~~g-~lWigt~-------~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~ 164 (758)
T 3ott_A 96 QPETDFPTDVRTMAL-QGD-TLWLGAL-------N-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY 164 (758)
T ss_dssp CCSCCCCSCEEEEEE-ETT-EEEEEET-------T-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET
T ss_pred CcccCCCceEEEEEe-cCC-cEEEEcC-------C-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC
Confidence 211112235776654 355 4555553 4 78889987654221100 11123566777777776655 444
Q ss_pred CCeEEEeeCCCCcccccceeEee-cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcC
Q 013475 345 GNYIAIFSSTPPFRLDKFKRYES-HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423 (442)
Q Consensus 345 ~~~i~i~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p 423 (442)
+-+..|+....... .+..... ......|.++....++..|..|+. +-|..+|..+++...........|.++....
T Consensus 165 -~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 241 (758)
T 3ott_A 165 -NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG 241 (758)
T ss_dssp -TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT
T ss_pred -CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC
Confidence 35777776553211 0000000 001223667777777776555654 4588899876654221111234688888887
Q ss_pred CCCCEEEEeeCCCcEEEc
Q 013475 424 ILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 424 ~~~~~l~s~~~dg~i~iw 441 (442)
++ .+. .|+.+| |.++
T Consensus 242 ~g-~lW-igT~~G-l~~~ 256 (758)
T 3ott_A 242 NG-DLL-AGTDNG-LYVY 256 (758)
T ss_dssp TC-CEE-EEETTE-EEEE
T ss_pred CC-CEE-EEeCCc-eeEE
Confidence 77 343 344444 5444
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.55 E-value=0.009 Score=52.16 Aligned_cols=191 Identities=10% Similarity=-0.021 Sum_probs=97.2
Q ss_pred CCEEEEecCC----CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC------CcEEEEECCCCcEEEe
Q 013475 158 AHLLASAGMD----QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD------CSSRLVDVEKGIETQS 227 (442)
Q Consensus 158 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~ 227 (442)
+++++.|+.+ ..+.+||..+.....+..+.........+.+ ++++++.|+.+ ..+.+||..+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 6777777754 5788899866644444333322222222222 66777777765 4688999988754333
Q ss_pred ee--CCcceEEEEEccCCCCEEEEeeC---------CCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCC
Q 013475 228 FR--EELAVRVVKFHPENSNLFLSGGS---------KGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVS 296 (442)
Q Consensus 228 ~~--~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 296 (442)
-. ....-.+++.. + ..+++.|+. -..+.+||+.+.+-...-.............-+++.++.|+...
T Consensus 134 ~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 211 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEA-N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211 (306)
T ss_dssp CCCSSCCBSCEEEEE-T-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred CCCcCCcceeEEEEE-C-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCC
Confidence 22 11111122222 3 367777754 34588999987753222111111111122223677777776410
Q ss_pred CCcCCCCeEEEEeCCCCcccceeecccc-ceeeeEEecCCCCeeEEEeCC-----CeEEEeeCCCC
Q 013475 297 GSNMSENSIVVWDVSREVPLSKQVYVEA-YTCPCVRHHPFDPYFVAQSNG-----NYIAIFSSTPP 356 (442)
Q Consensus 297 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~ 356 (442)
. ..-..+.+||+.+.+-......... .....+.+ ++..++.|+.+ +.+.+||..+.
T Consensus 212 ~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 212 L--GGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp T--EEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred C--CCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 0 0124688999887542211111111 11112222 56666666643 46777777654
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.50 E-value=0.047 Score=48.41 Aligned_cols=203 Identities=9% Similarity=0.108 Sum_probs=117.3
Q ss_pred ccccccceEEEEeeCCCCCEEEEec------------CCCcEEEEEcccCCcce-eeeecc-----CCCceeEEEeCC--
Q 013475 141 LCHHTKAVNSINWSPTHAHLLASAG------------MDQSICIWNVWSRDQKL-ARVLNF-----HSAAVNDVKWSQ-- 200 (442)
Q Consensus 141 l~~h~~~V~~~~~s~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~-~~~~~~-----h~~~v~~l~~~~-- 200 (442)
+.+-....-++...++ |..+++++ .+|.|.++|..+...+. ...+.+ ..-....|.+.+
T Consensus 45 i~~~~~G~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECTT-SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 3443345567778887 76555542 68999999986432221 112222 234667777755
Q ss_pred CCC-EEEEEec---CCcEEEEECCCC-cE---EEeee--CCcceEEEEEccCCCCEEEEee-----------------CC
Q 013475 201 QGL-FVLSCGY---DCSSRLVDVEKG-IE---TQSFR--EELAVRVVKFHPENSNLFLSGG-----------------SK 253 (442)
Q Consensus 201 ~~~-~l~s~~~---d~~v~vwd~~~~-~~---~~~~~--~~~~v~~~~~~~~~~~~l~~~~-----------------~d 253 (442)
++. +|+.+.. +.+|.+|+++.+ .. +..+. .-...+.+.+.++| .++++.. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCc
Confidence 343 4555533 467888877653 22 22333 23468899999986 5555543 12
Q ss_pred CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc-eeeccccceeeeEEe
Q 013475 254 GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS-KQVYVEAYTCPCVRH 332 (442)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~ 332 (442)
|.|+.+|. ++ +..+...-..-+.++|+||++.|..+.. ..+.|..|++.....+. ............+++
T Consensus 203 g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt------~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~v 273 (355)
T 3sre_A 203 SFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAEL------LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISV 273 (355)
T ss_dssp EEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEG------GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEE
T ss_pred cEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeC------CCCeEEEEEECCCCcEecCEEEeCCCCCceEEE
Confidence 45666654 32 2222223345689999999987766653 17899999987432221 111122456677889
Q ss_pred cC-CCCeeEEEe-CCCeEEEeeCC
Q 013475 333 HP-FDPYFVAQS-NGNYIAIFSST 354 (442)
Q Consensus 333 ~~-~~~~l~~~~-~~~~i~i~~~~ 354 (442)
.. +|.+.+++. ....|..|+..
T Consensus 274 D~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 274 DPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp CTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eCCCCcEEEEecCCceEEEEECCC
Confidence 98 588877664 33455555443
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.50 E-value=0.014 Score=50.94 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=105.1
Q ss_pred CCCEEEEEec----CCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeC----C-----CcEEEEECCCCc
Q 013475 201 QGLFVLSCGY----DCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGS----K-----GLLRLWDIRTGK 265 (442)
Q Consensus 201 ~~~~l~s~~~----d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~ 265 (442)
++..++.|+. -..+.+||..+++-...-. ....-.+++.. + ..+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4556666653 2458888888765433221 11111122222 3 367777765 2 468899988765
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNG 345 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (442)
-...-.............-+++.++.|+... ......+.+||+.+.+-.............++... ++..++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~ 178 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFD 178 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEET--TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCC--CcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCC
Confidence 3221111111111112223677777776411 00124688899887542211111111111112222 56666766543
Q ss_pred -----CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCC-----CcEEEEecCCceeeE--eeeccC
Q 013475 346 -----NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSD-----GSIYFYNCRSSELER--KIKAYE 413 (442)
Q Consensus 346 -----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~ 413 (442)
+.+.+||..+..-.. +.... ........+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+....
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~-~~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRM-ITAMN--TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEE-CCCCS--SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCcCceEEEEeCCCCeEee-CCCCC--CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 458888876643211 11110 01111112222 67777787754 469999988764322 222111
Q ss_pred CceeEEEEcCCCCCEEEEeeCCC
Q 013475 414 QACIDVAFHPILPNIIGSCSWNG 436 (442)
Q Consensus 414 ~~v~~~~~~p~~~~~l~s~~~dg 436 (442)
... ++... ++ ++++.|+.++
T Consensus 254 ~~~-~~~~~-~~-~i~v~GG~~~ 273 (308)
T 1zgk_A 254 SAL-GITVH-QG-RIYVLGGYDG 273 (308)
T ss_dssp BSC-EEEEE-TT-EEEEECCBCS
T ss_pred cce-EEEEE-CC-EEEEEcCcCC
Confidence 111 22222 34 6777777553
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0048 Score=54.24 Aligned_cols=195 Identities=11% Similarity=0.040 Sum_probs=108.9
Q ss_pred CEEEEEecCCcEEEEECCCCcEEEeeeCC--cceEEEEEc--cCCCCEEEEe-eCCCcEEEEECCCCceEEEecc----C
Q 013475 203 LFVLSCGYDCSSRLVDVEKGIETQSFREE--LAVRVVKFH--PENSNLFLSG-GSKGLLRLWDIRTGKVAHEYIQ----S 273 (442)
Q Consensus 203 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~ 273 (442)
..++.++.||.|.-+|.++|+.+..++.. .++....-. +.+...++.. +.||.|+.++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999998754 222221100 1122344443 6899999999988855444321 1
Q ss_pred CCCEeE---EEE-----eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccce------eeeEEec-----C
Q 013475 274 LGPILD---VEF-----TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYT------CPCVRHH-----P 334 (442)
Q Consensus 274 ~~~i~~---~~~-----~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~-----~ 334 (442)
..++.. ... ...+..+++++. ++.+...|+++++.+.......... ..|.... .
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSM-------RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEE-------EEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred ccccccCCCceeecccccccCCEEEEEec-------CCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 122221 000 014567778887 9999999999998887765432211 0011110 1
Q ss_pred CCCeeEEEeCCCeEEEeeCCCCccccccee--EeecccccCc-EEEEEccCCCEEEEecCCCcEEEEecCCceeeE
Q 013475 335 FDPYFVAQSNGNYIAIFSSTPPFRLDKFKR--YESHGVSGFP-IKCSFSLDGEKLVSGSSDGSIYFYNCRSSELER 407 (442)
Q Consensus 335 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~~~~~~v-~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~ 407 (442)
.+..++.+..+..+.+.+. ++. .+.+.. .........+ ..-.++.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 164 ~~~~v~ig~~~y~v~~~~~-sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHSY-DGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECCT-TSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEECC-CCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 2356777777777777773 333 333221 1111100000 00111235666 446778888888887777654
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.44 E-value=0.055 Score=47.79 Aligned_cols=242 Identities=8% Similarity=-0.011 Sum_probs=125.3
Q ss_pred ceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeee----ccCCCceeEEEeCCC---CCEEEEE-
Q 013475 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVL----NFHSAAVNDVKWSQQ---GLFVLSC- 208 (442)
Q Consensus 137 ~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~h~~~v~~l~~~~~---~~~l~s~- 208 (442)
.+..+...-..-+.|+|.|+ |.+|++--..|.|++++..++....+..+ .........|+|+|+ +.+|+..
T Consensus 23 ~~~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 33444444556789999999 88777765589999987643332223222 223567899999995 3445443
Q ss_pred e--cCCcEEEEECCCC----------cEE-Eeee--CCcceEEEEEccCCCCEEEEeeC-------------CCcEEEEE
Q 013475 209 G--YDCSSRLVDVEKG----------IET-QSFR--EELAVRVVKFHPENSNLFLSGGS-------------KGLLRLWD 260 (442)
Q Consensus 209 ~--~d~~v~vwd~~~~----------~~~-~~~~--~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd 260 (442)
+ .++.|.-|.+..+ +.+ ..+. .......|.|.|+| .++++.+. .|.|.-++
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 2 3556666666542 111 1121 12344679999997 66666442 35555555
Q ss_pred CCCC---------ceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcc----cc----------
Q 013475 261 IRTG---------KVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVP----LS---------- 317 (442)
Q Consensus 261 ~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~----~~---------- 317 (442)
.... ..+.. .++. ....++|+++|.++++-.. .++.=.|.-+..+.. ..
T Consensus 181 ~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g------~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 181 PDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFG------QDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp TTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECC------SSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred CCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecC------CCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 4321 11111 2333 3467899998877665432 122222222222110 00
Q ss_pred --eeecccc-ceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec
Q 013475 318 --KQVYVEA-YTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS 390 (442)
Q Consensus 318 --~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 390 (442)
....... .....+.|. ++..++.....+.|....+...........+. ......+..++..|||.++++.+
T Consensus 253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l-~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFL-EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEES-TTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEee-cCCCCCccEEEECCCCcEEEEEc
Confidence 0000011 123344554 35556656666666666655432211111111 11235678899999987666543
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.40 E-value=0.062 Score=47.46 Aligned_cols=241 Identities=8% Similarity=0.017 Sum_probs=128.2
Q ss_pred CCCceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEe--e-----eCCcceEEEEEccC---CCCEEEEe--eCCCcE
Q 013475 189 HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQS--F-----REELAVRVVKFHPE---NSNLFLSG--GSKGLL 256 (442)
Q Consensus 189 h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~-----~~~~~v~~~~~~~~---~~~~l~~~--~~dg~i 256 (442)
.-.....|+|.|+|.++++--..|.|++++..+++.... + ........|+|+|+ +..++++- ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 345668999999998777655589999998766654221 1 13567899999995 32344332 234556
Q ss_pred EEEECCCC----------ceE-EEec-cCCCCEeEEEEeeCCCEEEeccCCCC------CcCCCCeEEEEeCCCCc----
Q 013475 257 RLWDIRTG----------KVA-HEYI-QSLGPILDVEFTINGKQFVSSSDVSG------SNMSENSIVVWDVSREV---- 314 (442)
Q Consensus 257 ~iwd~~~~----------~~~-~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~------~~~~d~~i~iwd~~~~~---- 314 (442)
.-|.+..+ +.+ ..+. .....-..|.|.+||.++++.+.... .....+.|.-++....-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66665431 111 1221 11123467999999988887653100 00113555555554321
Q ss_pred ---ccceeeccccceeeeEEecCCCCeeEEEe-CCC--eEEEeeCCCCccccc---------c--eeEeecccccCcEEE
Q 013475 315 ---PLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGN--YIAIFSSTPPFRLDK---------F--KRYESHGVSGFPIKC 377 (442)
Q Consensus 315 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~i~i~~~~~~~~~~~---------~--~~~~~~~~~~~v~~~ 377 (442)
........ -.....++|+|++.++++-. .++ .|.+...-...-... + ..+.-..+......+
T Consensus 190 Pf~~~~i~a~G-~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 190 PFPGSPVYSYG-HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp SSTTCCEEEBC-CSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCeEEeeC-CCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 01111112 22467789999877666532 222 233322111100000 0 000000111234567
Q ss_pred EEccCCCEEEEecCCCcEEEEecCCcee----eEeeeccCCceeEEEEcCCCCCEEEEe
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRSSEL----ERKIKAYEQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~ 432 (442)
+|. +|.++...-..+.|....+..... ...+.+....+.+|+..||| .++++.
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~t 325 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLVT 325 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEEE
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEEE
Confidence 776 466666666667777777765432 22233445689999999999 455543
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.38 E-value=0.014 Score=52.38 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=91.2
Q ss_pred CCcEEEEECCCCceEEEeccC----CCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc----------c-
Q 013475 253 KGLLRLWDIRTGKVAHEYIQS----LGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL----------S- 317 (442)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~----------~- 317 (442)
++.||.-++......+.+... ...|..+..+|+|++|+..+ +..|.|..+..+... .
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP~~~~~~~~~~~~~~~q~ 111 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVPWGYSNVEDVSIQDAFQI 111 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECCTTCSCCCCHHHHHTTEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEecCccccCcccccccccce
Confidence 357777777644333343332 23678899999999999998 789999998732211 1
Q ss_pred -eeecc-----ccceeeeEEecCCC---CeeEEEeCCCeEEEeeCCCCccccc-c----eeEeecccccCcEEEEEccCC
Q 013475 318 -KQVYV-----EAYTCPCVRHHPFD---PYFVAQSNGNYIAIFSSTPPFRLDK-F----KRYESHGVSGFPIKCSFSLDG 383 (442)
Q Consensus 318 -~~~~~-----~~~~~~~~~~~~~~---~~l~~~~~~~~i~i~~~~~~~~~~~-~----~~~~~~~~~~~v~~~~~s~~g 383 (442)
..... ....|..+.|||-+ ..|++-..|+.|++||+........ + ..+........+.+++|..+|
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC
Confidence 11111 24568999999965 5799999999999999987332111 1 111111222457889999988
Q ss_pred CEEEE--ecCCCcEEEE
Q 013475 384 EKLVS--GSSDGSIYFY 398 (442)
Q Consensus 384 ~~l~~--g~~dg~i~iw 398 (442)
-.|+. .+.+|.|+-.
T Consensus 192 lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 192 LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCEEEEECTTSCEEEEE
T ss_pred cEEEEEecCCCCCEEEE
Confidence 77776 4488888754
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.31 E-value=0.043 Score=49.30 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=93.9
Q ss_pred eeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccc---cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 283 TINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVE---AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
..+|..++.+- ++.|+.-++......+.+.... ...+..+..+|+|.+++..+ +..|.|..+..+...
T Consensus 29 ~~n~t~i~~a~--------~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 29 SQNGTRIVFIQ--------DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSN 99 (452)
T ss_dssp ETTTTEEEEEE--------TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSC
T ss_pred EcCCCEEEEEE--------CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCcccc
Confidence 44666666665 6888888887544333333332 22577899999999998874 457777776632211
Q ss_pred c---------cceeEeecc----cccCcEEEEEcc---CCCEEEEecCCCcEEEEecCCc--eeeEeee---------cc
Q 013475 360 D---------KFKRYESHG----VSGFPIKCSFSL---DGEKLVSGSSDGSIYFYNCRSS--ELERKIK---------AY 412 (442)
Q Consensus 360 ~---------~~~~~~~~~----~~~~v~~~~~s~---~g~~l~~g~~dg~i~iwd~~~~--~~~~~~~---------~~ 412 (442)
. ..+.+.... ....|..+.|+| .|..|++-..|+.|++||+... ++. .++ ..
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR 178 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc
Confidence 0 111222211 245689999999 4578999999999999999852 122 222 12
Q ss_pred CCceeEEEEcCCCCCEEEEee--CCCcEE
Q 013475 413 EQACIDVAFHPILPNIIGSCS--WNGDVS 439 (442)
Q Consensus 413 ~~~v~~~~~~p~~~~~l~s~~--~dg~i~ 439 (442)
...|.+++|..++ ..|...+ .+|.|+
T Consensus 179 ~~ev~S~~Fg~~~-lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 179 VNDITDLEFSKDG-LTLYCLNTTEGGDIF 206 (452)
T ss_dssp CCCEEEEEECTTS-SCEEEEECTTSCEEE
T ss_pred cceEEEEEEcCCC-cEEEEEecCCCCCEE
Confidence 2578899999976 5555544 677775
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.29 E-value=0.018 Score=46.71 Aligned_cols=177 Identities=10% Similarity=-0.071 Sum_probs=95.6
Q ss_pred CCEEEEEecCCcEEEEECCCCc------EEEeeeC--CcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCce------E
Q 013475 202 GLFVLSCGYDCSSRLVDVEKGI------ETQSFRE--ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKV------A 267 (442)
Q Consensus 202 ~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~ 267 (442)
...|+....| +|+.=...++. ....+.. =..+..++|+|+| .+.++ .+|.++-.+..+... -
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3455566666 55554444443 1222322 2467799999976 55555 677777777654211 1
Q ss_pred EEec-cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc------ceeeccccceeeeEEecCCCCeeE
Q 013475 268 HEYI-QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL------SKQVYVEAYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 268 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 340 (442)
..+- ..-.....+.|.++|.+.++ + ||.|.-++-.+.... ..+....-..+..+.+.|+|.+.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav-~--------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lya 150 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV-S--------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYA 150 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE-E--------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEE
T ss_pred cEecccccccceEEEECCCCCEEEe-C--------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEE
Confidence 1110 01112477899999998888 4 899988876432111 011111123568899999999988
Q ss_pred EEeCCCeEEEeeCCCCcc--cccceeEeecccccCcEEEEEccCCCEEEEecCCCcE
Q 013475 341 AQSNGNYIAIFSSTPPFR--LDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSI 395 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 395 (442)
+. ++.++-...-.... ........+.........+.|.++|.+.++. +|.+
T Consensus 151 v~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 151 VH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred Ee--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 88 66554332221110 0011222222222233446688888777766 6643
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.29 E-value=0.11 Score=48.19 Aligned_cols=239 Identities=10% Similarity=0.087 Sum_probs=135.3
Q ss_pred EEEEecCCCcEEEEEcccCCcceeeeecc-------------------------CCCce--eEEEeCC---CCCEEEEEe
Q 013475 160 LLASAGMDQSICIWNVWSRDQKLARVLNF-------------------------HSAAV--NDVKWSQ---QGLFVLSCG 209 (442)
Q Consensus 160 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------h~~~v--~~l~~~~---~~~~l~s~~ 209 (442)
.|.||+..|.|+|+-+- ..+.+..+.- ..+.. ..+++.. ||++|+.-.
T Consensus 72 ~f~SgG~sG~v~v~G~P--SmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNd 149 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVP--SMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFIND 149 (638)
T ss_dssp EEEECGGGCCEEEEEET--TTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEE
T ss_pred EEeecCcCceEEEEecC--CcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEec
Confidence 46788888999999873 3333333221 01111 1333332 677888766
Q ss_pred c-CCcEEEEECCCCcEEEeee--CCcceEEEEEc--cCCCCEEEEeeC-------CCcEE------------EEECCCCc
Q 013475 210 Y-DCSSRLVDVEKGIETQSFR--EELAVRVVKFH--PENSNLFLSGGS-------KGLLR------------LWDIRTGK 265 (442)
Q Consensus 210 ~-d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~l~~~~~-------dg~i~------------iwd~~~~~ 265 (442)
. +..|-..+++..++-+.++ ....+..++|- |+ ..+++++++ ||... ..|..+.+
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~-T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~ 228 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPH-TKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETME 228 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSB-CCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCS
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCC-ccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccE
Confidence 4 6678889999988877666 67788999986 55 467777654 33311 12222222
Q ss_pred eEEEeccCCCCEeEEEEeeCCCEEEeccCCCC--------CcCCCC-------------------------eEEEEeCCC
Q 013475 266 VAHEYIQSLGPILDVEFTINGKQFVSSSDVSG--------SNMSEN-------------------------SIVVWDVSR 312 (442)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--------~~~~d~-------------------------~i~iwd~~~ 312 (442)
....+.. .+....+...++|++.++.+.-.. ..+... .|.+.|.+.
T Consensus 229 v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~ 307 (638)
T 3sbq_A 229 MAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRK 307 (638)
T ss_dssp EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSC
T ss_pred EEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccc
Confidence 2222211 122334555677888777665110 000111 344555544
Q ss_pred ----CcccceeeccccceeeeEEecCCCCeeEEEe-CCCeEEEeeCCCCccccc------ce-eEeecccccCcEEEEEc
Q 013475 313 ----EVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS-NGNYIAIFSSTPPFRLDK------FK-RYESHGVSGFPIKCSFS 380 (442)
Q Consensus 313 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~------~~-~~~~~~~~~~v~~~~~s 380 (442)
+..+ ............+..+|+|+++++++ .+.++.+++.+....... -. ..............+|.
T Consensus 308 ~~~~~~~~-~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd 386 (638)
T 3sbq_A 308 KDGKDSKF-TRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD 386 (638)
T ss_dssp BTTBCCSS-EEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred ccccCCce-EEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence 1111 11112233456688999999988854 578999999875322100 00 01111223446788999
Q ss_pred cCCCEEEEecCCCcEEEEecCCc
Q 013475 381 LDGEKLVSGSSDGSIYFYNCRSS 403 (442)
Q Consensus 381 ~~g~~l~~g~~dg~i~iwd~~~~ 403 (442)
++|....+---|..|..|++...
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCceEeeeeecceEEEEeccHH
Confidence 99966666678999999998753
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.14 E-value=0.054 Score=48.33 Aligned_cols=241 Identities=9% Similarity=0.004 Sum_probs=111.3
Q ss_pred CCEEEEecC-CCcEEEEEccc--CCcceeeeec-cCCCceeEEEeCCCCCEEEEEec-C---------CcEEEEECCCCc
Q 013475 158 AHLLASAGM-DQSICIWNVWS--RDQKLARVLN-FHSAAVNDVKWSQQGLFVLSCGY-D---------CSSRLVDVEKGI 223 (442)
Q Consensus 158 ~~~l~s~~~-dg~i~iwd~~~--~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~-d---------~~v~vwd~~~~~ 223 (442)
+++++.|+. ...+.+||... .....+..+. ........+.+ ++++++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 667777764 34788888753 3233333222 11111122222 5667777765 2 468899998875
Q ss_pred EEEeeeCC--c-ceEEEEEccCCCCEEEEeeCC---------------------------------------CcEEEEEC
Q 013475 224 ETQSFREE--L-AVRVVKFHPENSNLFLSGGSK---------------------------------------GLLRLWDI 261 (442)
Q Consensus 224 ~~~~~~~~--~-~v~~~~~~~~~~~~l~~~~~d---------------------------------------g~i~iwd~ 261 (442)
-...-... . .-.+++. .+ ..+++.|+.+ ..+.+||+
T Consensus 98 W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred EEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 43322211 1 1122222 33 3777788754 47899999
Q ss_pred CCCceEE--EeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeC--CCCcccceeecc-ccceeeeEEecCCC
Q 013475 262 RTGKVAH--EYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDV--SREVPLSKQVYV-EAYTCPCVRHHPFD 336 (442)
Q Consensus 262 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 336 (442)
.+.+-.. .+......-.++.. -+++.++.|+... .......+.+||+ .+..-....... ........+...++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~-~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAK-PGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEE-TTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecC-CCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 8765322 22211111022222 3667777766310 0001345777877 332211100001 11111111223355
Q ss_pred CeeEEEeCC----------------------CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCC-
Q 013475 337 PYFVAQSNG----------------------NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDG- 393 (442)
Q Consensus 337 ~~l~~~~~~----------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg- 393 (442)
+.++.|+.+ ..+.+||..+..-. .+..+. ..... ..+..-++++++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p--~~r~~--~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD-KSGELS--QGRAY--GVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE-EEEECS--SCCBS--SEEEEETTEEEEEEEECGG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee-eCCCCC--CCccc--ceeEEeCCEEEEEeeeCCC
Confidence 666666532 24678887754321 111111 11111 122334777888887543
Q ss_pred -----cEEEEecCCceeeEee
Q 013475 394 -----SIYFYNCRSSELERKI 409 (442)
Q Consensus 394 -----~i~iwd~~~~~~~~~~ 409 (442)
.|.++++++++.+...
T Consensus 329 ~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEeeeEEEEEEcCcEeEeee
Confidence 3666688777665543
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.13 E-value=0.075 Score=43.08 Aligned_cols=178 Identities=10% Similarity=-0.116 Sum_probs=97.9
Q ss_pred CEEEEeeCCCcEEEEECCCCc------eEEEecc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc-
Q 013475 245 NLFLSGGSKGLLRLWDIRTGK------VAHEYIQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL- 316 (442)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~- 316 (442)
.+|++..+| +|+.=....+. ...++-. .-..+..++|+|+|.+.++ . +|.+.-.+..+....
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~--------~G~Ly~~~~~t~~~~~ 74 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-L--------NDKIYKGTPPTHDNDN 74 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-E--------TTEEEEESCCCSTTCC
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-e--------CCeEEEECCCCCCccc
Confidence 566666777 66655444333 1122211 1347789999999997777 4 787777666442211
Q ss_pred -----ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc-c-cceeEeecccccCcEEEEEccCCCEEEEe
Q 013475 317 -----SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL-D-KFKRYESHGVSGFPIKCSFSLDGEKLVSG 389 (442)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~-~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 389 (442)
..+-...-.....+.|.+++.+.++ .|+.|+-++.-+.... + .-....+...-..+..+.|.|+|.+.++.
T Consensus 75 W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 75 WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 1110001112478899999998888 5588887775322111 1 11122222222346789999999888777
Q ss_pred cCCCcEEEEecCCce------eeEeee-ccCCceeEEEEcCCCCCEEEEeeCCCcEE
Q 013475 390 SSDGSIYFYNCRSSE------LERKIK-AYEQACIDVAFHPILPNIIGSCSWNGDVS 439 (442)
Q Consensus 390 ~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 439 (442)
|+.++-+...++. ....+. ..-..-..+.|.+++ .+.+.. +|.++
T Consensus 153 --dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~~Y 204 (236)
T 1tl2_A 153 --GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKFY 204 (236)
T ss_dssp --TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred --CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC-cEEEEe--CCeEE
Confidence 7776544333211 111111 222344557799998 455444 76543
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.12 E-value=0.11 Score=44.84 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=120.3
Q ss_pred EEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC-CcEEEeee
Q 013475 151 INWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK-GIETQSFR 229 (442)
Q Consensus 151 ~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~ 229 (442)
.-.+|. .+.+|.-. ..++.|+|+++. ..++.+. ....|.-=.|-.+. .|+-.+ +..|+-|+++. ..+.+.|.
T Consensus 72 AIMnP~-~~ViALra-g~~LQiFnletK--~klks~~-~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 72 AIMNPA-SKVIALKA-GKTLQIFNIEMK--SKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EEECSS-SSEEEEEE-TTEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred eeeCCC-ccEEEEec-CCeEEEechHHh--hhhccee-cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeee
Confidence 345787 77777765 579999999554 4455554 34677777787554 444444 67799999975 35566665
Q ss_pred -----CCcceEEEEEccCCCCEEEEee------CCCcEEEEECCCCceEEEeccCCCCEeEEEEee--C-CCEEEeccCC
Q 013475 230 -----EELAVRVVKFHPENSNLFLSGG------SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTI--N-GKQFVSSSDV 295 (442)
Q Consensus 230 -----~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~~~~~ 295 (442)
....|.....+++...++++|- -.|.+.+|..+. +.-+.+.+|......+.+.. . ...|+.+...
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 2456777788888655555543 247789999865 44466677644332222211 1 1233333320
Q ss_pred CCCcCCCCeEEEEeCCCC---cccc-e----eeccc---cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 296 SGSNMSENSIVVWDVSRE---VPLS-K----QVYVE---AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 296 ~~~~~~d~~i~iwd~~~~---~~~~-~----~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
...+.++|.++... .... + +.... ..--.++..++.-..+..-+.-|.+++||++++..+
T Consensus 224 ----~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 224 ----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp ----TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ----CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 01368999998543 1111 1 11111 222345677777788889999999999999998654
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.08 E-value=0.021 Score=52.90 Aligned_cols=190 Identities=7% Similarity=-0.003 Sum_probs=109.1
Q ss_pred CCEEEEec-CCCcEEEEEcccCCcceeeeeccCCCceeEEEeC--CCCCEEEEEec-------CCcE------------E
Q 013475 158 AHLLASAG-MDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWS--QQGLFVLSCGY-------DCSS------------R 215 (442)
Q Consensus 158 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~-------d~~v------------~ 215 (442)
|+||+.-. .+..|..-+++.-+...+..+. ....+..++|- |+..|++.++. ||.. .
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 56776654 4567777777554444444444 56788899986 68888888775 3321 1
Q ss_pred EEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeC---------------CCcEEEEE--------------------
Q 013475 216 LVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGS---------------KGLLRLWD-------------------- 260 (442)
Q Consensus 216 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~iwd-------------------- 260 (442)
..|.++.+...++...+....+...+++ .+.++.+. ...+.++|
T Consensus 221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g-~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVDGNLDNTDADYTG-RFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEcCCChhhcCCCCCC-CEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 1233333333333323333334445554 33333221 11244444
Q ss_pred -----CCC----CceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc-----------ceee
Q 013475 261 -----IRT----GKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPL-----------SKQV 320 (442)
Q Consensus 261 -----~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-----------~~~~ 320 (442)
.+. +..+..+..-......+..+|||++++.++. -+.++.++|++..... ..-.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK------LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae 373 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK------LSPTCSMIAIDKLPDLFAGKLADPRDVIVGE 373 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT------TSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC------CCCeEEEEEeehhhhhhhccccCcccceEee
Confidence 333 1111111112233467889999999999887 3899999999852110 0111
Q ss_pred ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 321 YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
..-.......+|.++|..+.+..-|..|.-|++..
T Consensus 374 ~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 374 PELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred ccCCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 12344567789999997777788999999999865
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.021 Score=50.15 Aligned_cols=112 Identities=8% Similarity=0.118 Sum_probs=69.6
Q ss_pred CEEEEecCCCcEEEEEcccCCcceeeeeccC-CCceeEEEeC--CCCCEEEEE--ecCCcEEEEECCCCcEEEeeeCCcc
Q 013475 159 HLLASAGMDQSICIWNVWSRDQKLARVLNFH-SAAVNDVKWS--QQGLFVLSC--GYDCSSRLVDVEKGIETQSFREELA 233 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~--~~~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~ 233 (442)
.+++.++.||.|.-.|..++ +....++.. ..++....-. +.+..++.+ ..||.|..++..+|.....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 46788888999999887544 666665532 1222221100 112234433 5799999999998866555542111
Q ss_pred e--EEEEEc-----------cCCCCEEEEeeCCCcEEEEECCCCceEEEeccC
Q 013475 234 V--RVVKFH-----------PENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQS 273 (442)
Q Consensus 234 v--~~~~~~-----------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 273 (442)
+ .-+... .. ...+++|+.+|.+...|+++|+.+.++...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1 001111 02 367899999999999999999999888643
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.01 E-value=0.18 Score=45.43 Aligned_cols=198 Identities=13% Similarity=0.145 Sum_probs=121.9
Q ss_pred EEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC-CcEEEee
Q 013475 150 SINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK-GIETQSF 228 (442)
Q Consensus 150 ~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~ 228 (442)
+.-.+|. .+.+|.-. ..++.|+|+++. ..++.+. ....|.-=.|-.+. .|+..+ +..|+-|+++. ..+.+.|
T Consensus 70 sAIMnP~-~~iiALra-g~~lQiFnle~K--~klks~~-~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPA-SKVIALKA-GKTLQIFNIEMK--SKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSS-SSCEEEEE-TTEEEEEETTTT--EEEEEEE-CSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCC-CcEEEEec-CCeEEEEchHHh--hhhccee-cCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence 3446777 67777665 579999999554 4444444 23566666776543 444444 67799999975 3556666
Q ss_pred e-----CCcceEEEEEccCCCCEEEEee------CCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC---CCEEEeccC
Q 013475 229 R-----EELAVRVVKFHPENSNLFLSGG------SKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN---GKQFVSSSD 294 (442)
Q Consensus 229 ~-----~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~ 294 (442)
. ....|.....+++...++++|- -.|.+.+|..+.+ .-+.+.+|......+....+ ...|+.+..
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 5 2456777888888655555542 2477899998654 44667777554433332211 123333332
Q ss_pred CCCCcCCCCeEEEEeCCCC---c-ccce----eeccc---cceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc
Q 013475 295 VSGSNMSENSIVVWDVSRE---V-PLSK----QVYVE---AYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL 359 (442)
Q Consensus 295 ~~~~~~~d~~i~iwd~~~~---~-~~~~----~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 359 (442)
. ...+.++|.++... . ...+ +.... ..--.++..++.-..+..-+..|.+.+||+.++..+
T Consensus 222 ~----~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 222 G----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp S----TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred c----CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 0 01478999998543 1 1111 11111 223456777888888999999999999999998655
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.01 E-value=0.033 Score=49.73 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCEEEEEec-CCcEEEEECCC--CcEEEeee-C--CcceEEEEEccCCCCEEEEeeC-C---------CcEEEEECCCC
Q 013475 201 QGLFVLSCGY-DCSSRLVDVEK--GIETQSFR-E--ELAVRVVKFHPENSNLFLSGGS-K---------GLLRLWDIRTG 264 (442)
Q Consensus 201 ~~~~l~s~~~-d~~v~vwd~~~--~~~~~~~~-~--~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~ 264 (442)
++.+++.|+. ...+.+||+.+ .+-...-. . ...-.+++.. + ..+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-D-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-T-TEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-C-CEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5555566654 34688888864 32221111 1 1111222222 3 367777765 2 46899999876
Q ss_pred ceEEEeccC-CCCEeEEEEeeCCCEEEeccC
Q 013475 265 KVAHEYIQS-LGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 265 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~ 294 (442)
+-...-... .......+...+++.++.|+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 127 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCc
Confidence 532211111 111111122357778787774
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.98 E-value=0.15 Score=50.19 Aligned_cols=198 Identities=9% Similarity=0.073 Sum_probs=103.2
Q ss_pred CCEEEEecCC----CcEEEEEcccCCcceee-e-----eccCCCceeEEEeCC-CCCEEEEEecC------CcEEEEECC
Q 013475 158 AHLLASAGMD----QSICIWNVWSRDQKLAR-V-----LNFHSAAVNDVKWSQ-QGLFVLSCGYD------CSSRLVDVE 220 (442)
Q Consensus 158 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~-----~~~h~~~v~~l~~~~-~~~~l~s~~~d------~~v~vwd~~ 220 (442)
+.+++.|+.+ ..+.+||..+.....+. . .. ....-.+++... +++.++.|+.+ +.+.+||..
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p-~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVP-VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCC-CCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCC-ccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 6777777753 46888998666554443 2 11 111112333333 67777777754 357889988
Q ss_pred CCcEEEeee--CCcceEEEEEccCCCCEEEEeeCCC--cEEEEECCCCceEEEec-----cCCCCEeEEEEeeC-CCEEE
Q 013475 221 KGIETQSFR--EELAVRVVKFHPENSNLFLSGGSKG--LLRLWDIRTGKVAHEYI-----QSLGPILDVEFTIN-GKQFV 290 (442)
Q Consensus 221 ~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~~-~~~l~ 290 (442)
+.+-...-. ....-.+++...+ ..+++.|+.++ .+.+||+.+.+-...-. ........+.+..+ ++.++
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 864433222 1111222333234 47888887654 69999998765322111 11112223455544 66777
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcc-----cceeec--cccceeeeEEecCCCCeeEEEeC--------CCeEEEeeCCC
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVP-----LSKQVY--VEAYTCPCVRHHPFDPYFVAQSN--------GNYIAIFSSTP 355 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~--------~~~i~i~~~~~ 355 (442)
.|+.........+.+.+||+.+..- ...... .....-..+....++..++.|+. ...+.+||..+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7664111001135789999988762 111111 11111122233333677777663 35688898876
Q ss_pred Cc
Q 013475 356 PF 357 (442)
Q Consensus 356 ~~ 357 (442)
..
T Consensus 636 ~~ 637 (695)
T 2zwa_A 636 ET 637 (695)
T ss_dssp TE
T ss_pred Ce
Confidence 53
No 341
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.95 E-value=0.081 Score=46.23 Aligned_cols=151 Identities=11% Similarity=-0.022 Sum_probs=75.1
Q ss_pred CCEEEEecC----C-------CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC--------CcEEEEE
Q 013475 158 AHLLASAGM----D-------QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD--------CSSRLVD 218 (442)
Q Consensus 158 ~~~l~s~~~----d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------~~v~vwd 218 (442)
+++++.|+. + ..+.+||..+.....+..+.........+.+ +++.++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 677777773 1 1267788755543333222211111112222 56677777642 4588999
Q ss_pred CCCCcEEEeee--CCcceEEEEEccCCCCEEEEeeC-C-----CcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 219 VEKGIETQSFR--EELAVRVVKFHPENSNLFLSGGS-K-----GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 219 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
..+.+-...-. ....-.+++. -+ ..+++.|+. + ..+.+||+.+.+-...-..........+..-+++.++
T Consensus 124 ~~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 201 (315)
T 4asc_A 124 RLSFKWGESDPLPYVVYGHTVLS-HM-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV 201 (315)
T ss_dssp TTTTEEEECCCCSSCCBSCEEEE-ET-TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCcEeECCCCCCcccceeEEE-EC-CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEE
Confidence 98875333222 1111122222 23 367777776 2 4689999987643221111111111122233677777
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
.|+.... .....+.+||+.+.+
T Consensus 202 ~GG~~~~--~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 202 AAGVTDT--GLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEECSS--SEEEEEEEEETTTTE
T ss_pred EeccCCC--CccceEEEEECCCCe
Confidence 7765100 002368889988753
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.94 E-value=0.25 Score=45.71 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=62.8
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEE--eee-------CCcceEEEEEccC---CCCEEEEeeC------
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQ--SFR-------EELAVRVVKFHPE---NSNLFLSGGS------ 252 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~-------~~~~v~~~~~~~~---~~~~l~~~~~------ 252 (442)
.....|+|.|+|+++++-...+.|++++..+++... .+. .......|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999877764433478888876554432 221 2356779999995 4355444432
Q ss_pred ------CCcEEEEECCCC-------ceEE-Eecc-CCCCEeEEEEeeCCCEEEeccC
Q 013475 253 ------KGLLRLWDIRTG-------KVAH-EYIQ-SLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 253 ------dg~i~iwd~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
...|.-|++..+ +.+. .+.. .......|.|.+||.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666655332 1111 1221 1234688999999998887654
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.86 E-value=0.2 Score=43.46 Aligned_cols=177 Identities=7% Similarity=-0.035 Sum_probs=100.3
Q ss_pred EeCCCCCEEEEEecC--------------CcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEe---eCCCcEEEE
Q 013475 197 KWSQQGLFVLSCGYD--------------CSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSG---GSKGLLRLW 259 (442)
Q Consensus 197 ~~~~~~~~l~s~~~d--------------~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~iw 259 (442)
-+++++.+|+.+... ..|+..+++.++........ +..|++++..++.+- ..+..|+..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 456788888887653 36777787776543333222 225667764444443 234456666
Q ss_pred ECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCee
Q 013475 260 DIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYF 339 (442)
Q Consensus 260 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 339 (442)
++... ....+..+.. ..|+++++.|.-.+. ....|...++...... .+. ... . ...++|++.+|
T Consensus 135 ~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~------g~~~Iy~~~l~g~~~~-~l~-~~~--~-~~~~~P~g~~i 198 (302)
T 3s25_A 135 RIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNP------KNGQLYRYDTASQSEA-LFY-DCN--C-YKPVVLDDTNV 198 (302)
T ss_dssp ETTSC-CCEEEESSCC----CCSEEETTEEEEECT------TTCCEEEEETTTTEEE-EEE-CSC--E-EEEEEEETTEE
T ss_pred ECCCC-CeEEEeCCCc----eEeeEECCEEEEEeC------CCceEEEEECCCCCEE-EEe-CCC--c-cceeeecCCEE
Confidence 76533 3344443322 356778888876653 1578888888765432 221 111 1 12355888888
Q ss_pred EEEeCC--CeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEec--CCCcEEEEecCCc
Q 013475 340 VAQSNG--NYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGS--SDGSIYFYNCRSS 403 (442)
Q Consensus 340 ~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~iwd~~~~ 403 (442)
+-...+ ..|..-++++...... .. ..+ ..|+|++++|+.+. ..+.|..-++...
T Consensus 199 y~t~~~~~~~I~~~~ldG~~~~~L----t~----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 199 YYMDVNRDNAIVHVNINNPNPVVL----TE----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEGGGTTEEEEECSSSCCCEEC----SC----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEcCCCcEEEEEECCCCCeEEE----eC----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 775543 4677777776543211 11 112 34788888888653 3456777777543
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.79 E-value=0.17 Score=44.26 Aligned_cols=150 Identities=11% Similarity=0.036 Sum_probs=74.5
Q ss_pred CCEEEEecC----CC-------cEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecC-------CcEEEEEC
Q 013475 158 AHLLASAGM----DQ-------SICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-------CSSRLVDV 219 (442)
Q Consensus 158 ~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-------~~v~vwd~ 219 (442)
+++++.|+. ++ .+.+||..+.....+..+.........+.+ +++.++.|+.+ ..+.+||.
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeC
Confidence 677777773 12 167778755544333333221111122222 56777777754 35788898
Q ss_pred CCCcEEEeeeCCcc--eEEEEEccCCCCEEEEeeC------CCcEEEEECCCCceEEEeccCCCCE-eEEEEeeCCCEEE
Q 013475 220 EKGIETQSFREELA--VRVVKFHPENSNLFLSGGS------KGLLRLWDIRTGKVAHEYIQSLGPI-LDVEFTINGKQFV 290 (442)
Q Consensus 220 ~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~ 290 (442)
.+.+-...-..... -.+++. .+ ..+++.|+. -..+.+||+.+.+-...-....... .++. .-+++.++
T Consensus 135 ~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv 211 (318)
T 2woz_A 135 VAAKWSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKIVI 211 (318)
T ss_dssp TTTEEEEECCCSSCEESCEEEE-ET-TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEE
T ss_pred CCCCEeECCCCCCcccccEEEE-EC-CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEEEE
Confidence 87754433221111 112222 23 367777764 2359999998765322211111111 1222 23677777
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREV 314 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~ 314 (442)
.|+... ......+.+||+.+.+
T Consensus 212 ~GG~~~--~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 212 AGGVTE--DGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEET--TEEEEEEEEEETTTCC
T ss_pred EcCcCC--CCccceEEEEECCCCe
Confidence 776410 0002467789987754
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.77 E-value=0.51 Score=46.91 Aligned_cols=269 Identities=11% Similarity=0.029 Sum_probs=143.9
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeee-ecc----CCCceeEEEeCCCCCEEEEEecCCcEEEEECC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARV-LNF----HSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE 220 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~ 220 (442)
..|.++....+ +.+.+ |+.+ -|..++..+. ..... ... ....|.++....++..|..|.. +-+..+|..
T Consensus 146 ~~i~~i~~d~~-g~lWi-gt~~-Gl~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 146 NTIYSIIRTKD-NQIYV-GTYN-GLCRYIPSNG--KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp SCEEEEEECTT-CCEEE-EETT-EEEEEETTTT--EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT
T ss_pred CeEEEEEEcCC-CCEEE-EeCC-CHhhCccCCC--ceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC
Confidence 46888888777 66544 4444 4777776433 22111 111 1234888888776665555554 458889987
Q ss_pred CCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEec-------cCCCCEeEEEEeeCCCEEEec
Q 013475 221 KGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYI-------QSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 221 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~ 292 (442)
+++...... ....|.++....+| .+ ..|+.+ -+.+++..+++...-.. .....|.++....+|.+.+ |
T Consensus 220 ~~~~~~~~~l~~~~i~~i~~d~~g-~l-WigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-G 295 (758)
T 3ott_A 220 TGQIKQTEAFHNNSIKSLALDGNG-DL-LAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-G 295 (758)
T ss_dssp TTEEEEEEEEEEEEEEEEEECTTC-CE-EEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-E
T ss_pred CCeEEeccCCCCCeEEEEEEcCCC-CE-EEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-E
Confidence 765432211 23457788777765 44 444544 58888877654322111 1224588888777776544 4
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceee------ccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEe
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQV------YVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYE 366 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~ 366 (442)
+. .| +.++.... ...... ......+.++....+|.+.+. +.+ -+..++....... .+..+.
T Consensus 296 T~-------~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~-Gl~~~~~~~~~~~-~~~~~~ 362 (758)
T 3ott_A 296 TD-------YG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GAN-GLIRFTDPAGERH-DAIWYR 362 (758)
T ss_dssp ES-------SS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETT-EEEEESCTTSSCC-CCEEEC
T ss_pred eC-------Cc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCC-cceeecccccccc-eeEEec
Confidence 43 55 54443322 111111 011235677777777766554 444 4666665432110 111111
Q ss_pred e-----cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee-c-----cCCceeEEEEcCCCCCEEEEeeCC
Q 013475 367 S-----HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK-A-----YEQACIDVAFHPILPNIIGSCSWN 435 (442)
Q Consensus 367 ~-----~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~-----~~~~v~~~~~~p~~~~~l~s~~~d 435 (442)
. ......|.++.-..+|++.+ |+. +-|..||..+++...-.. . ....|.++....++ .|..|+..
T Consensus 363 ~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~ 438 (758)
T 3ott_A 363 MGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCL 438 (758)
T ss_dssp TTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESS
T ss_pred cCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECC
Confidence 0 01123477777777776555 443 469999988765432211 1 12458888887776 45555555
Q ss_pred CcEEEc
Q 013475 436 GDVSVY 441 (442)
Q Consensus 436 g~i~iw 441 (442)
+-|.++
T Consensus 439 ~Gl~~~ 444 (758)
T 3ott_A 439 GGIFVV 444 (758)
T ss_dssp SCEEEE
T ss_pred CceEEE
Confidence 445544
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.67 E-value=0.28 Score=48.21 Aligned_cols=200 Identities=12% Similarity=0.089 Sum_probs=102.9
Q ss_pred CCCCEEEEEecC----CcEEEEECCCCcEEEee-e-------CCcceEEEEEcc-CCCCEEEEeeCC------CcEEEEE
Q 013475 200 QQGLFVLSCGYD----CSSRLVDVEKGIETQSF-R-------EELAVRVVKFHP-ENSNLFLSGGSK------GLLRLWD 260 (442)
Q Consensus 200 ~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~-~-------~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~iwd 260 (442)
-++..++.|+.+ ..+.+||..+++-...- . ....-.+++... ++ .+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEe
Confidence 456677777753 46889998887544332 1 111122333332 43 677777754 3588999
Q ss_pred CCCCceEEEeccCCCCE-eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceee---c-cccceeeeEEecCC
Q 013475 261 IRTGKVAHEYIQSLGPI-LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQV---Y-VEAYTCPCVRHHPF 335 (442)
Q Consensus 261 ~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~~~ 335 (442)
+.+.+-...-....... .+++...+++.++.|+... ++.+.+||..+..-..... . ........+.+...
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~-----~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE-----GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS-----SCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC-----CCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 88764322111111111 1222223788888887511 1279999998754221111 1 11122233444544
Q ss_pred -CCeeEEEeC-------CCeEEEeeCCCCcc--cccceeEeec-ccccCcEEEEEccCCCEEEEecC--------CCcEE
Q 013475 336 -DPYFVAQSN-------GNYIAIFSSTPPFR--LDKFKRYESH-GVSGFPIKCSFSLDGEKLVSGSS--------DGSIY 396 (442)
Q Consensus 336 -~~~l~~~~~-------~~~i~i~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~--------dg~i~ 396 (442)
+..++.|+. .+.+.+||..+... .......... .....-..++...++++++.|+. ...|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 667777655 24688899887652 0001111111 01111112333333777788774 34699
Q ss_pred EEecCCcee
Q 013475 397 FYNCRSSEL 405 (442)
Q Consensus 397 iwd~~~~~~ 405 (442)
+||..+.+-
T Consensus 630 ~yd~~t~~W 638 (695)
T 2zwa_A 630 SLDPLSETL 638 (695)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 999987654
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.60 E-value=0.31 Score=42.21 Aligned_cols=180 Identities=9% Similarity=0.067 Sum_probs=98.0
Q ss_pred EEeeCCCCCEEEEecC-C-------------CcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEe--c--CC
Q 013475 151 INWSPTHAHLLASAGM-D-------------QSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCG--Y--DC 212 (442)
Q Consensus 151 ~~~s~~~~~~l~s~~~-d-------------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~--d~ 212 (442)
--++++ +.+|+-... + ..|+..+++..+...+ .. .. +..|++++++|+-.. . +.
T Consensus 58 ~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l--~~---~~--~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVL--DP---DP--CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEE--EC---SC--EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEe--ec---CC--ccEEEEeCCEEEEEeecCCCCc
Confidence 446788 666655543 2 3455556544322222 21 11 236677888888776 2 44
Q ss_pred cEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEec
Q 013475 213 SSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSS 292 (442)
Q Consensus 213 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (442)
.|...+++.....+...+.. ..|++++..++.+......|...++..+.....+. +... ..+.|++.+|+-.
T Consensus 130 ~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp EEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEE
T ss_pred eEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEE
Confidence 56666666444333333322 45677776666665556789999987655433333 2222 3466888888766
Q ss_pred cCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEe--CCCeEEEeeCCCCc
Q 013475 293 SDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQS--NGNYIAIFSSTPPF 357 (442)
Q Consensus 293 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~i~~~~~~~ 357 (442)
... ....|..-++...... ..... .+ ..++|.+.+|..+. ....|...+++...
T Consensus 202 ~~~-----~~~~I~~~~ldG~~~~--~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 202 DVN-----RDNAIVHVNINNPNPV--VLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EGG-----GTTEEEEECSSSCCCE--ECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EcC-----CCcEEEEEECCCCCeE--EEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 540 0235666666554321 11111 12 34777788777653 34677777777654
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.00 E-value=0.34 Score=50.60 Aligned_cols=211 Identities=8% Similarity=0.121 Sum_probs=118.2
Q ss_pred CCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEE
Q 013475 211 DCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV 290 (442)
Q Consensus 211 d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (442)
..+|.|.|+.++..+.. ..-..-+.-.+|.. ++++.-. ..++.|||+.+.+.+..+.-. .+|.-=.|- +.+.|+
T Consensus 47 ~~~vvIidl~~~~~~~r--rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWi-s~~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR--RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI-SLNTVA 120 (1630)
T ss_pred CceEEEEECCCCCCccc--ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEec-CCCeeE
Confidence 44788899888664422 22223345567873 6655544 678999999988777666554 356555665 344555
Q ss_pred eccCCCCCcCCCCeEEEEeCCCCcccceeecc----ccceeeeEEecCCCCeeEEEe-------CCCeEEEeeCCCCccc
Q 013475 291 SSSDVSGSNMSENSIVVWDVSREVPLSKQVYV----EAYTCPCVRHHPFDPYFVAQS-------NGNYIAIFSSTPPFRL 359 (442)
Q Consensus 291 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-------~~~~i~i~~~~~~~~~ 359 (442)
..+ +..|..|++.......+.... ....|.....+++.++++..+ -.|.+.+|+.+....
T Consensus 121 lVT--------~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s- 191 (1630)
T 1xi4_A 121 LVT--------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS- 191 (1630)
T ss_pred EEc--------CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-
Confidence 555 689999999753322222221 245677788888999877633 347888888876543
Q ss_pred ccceeEeecccccCcEEEEE--ccC-CCEEEEec---CCCcEEEEecCCc---eeeE------e-ee--ccCCceeEEEE
Q 013475 360 DKFKRYESHGVSGFPIKCSF--SLD-GEKLVSGS---SDGSIYFYNCRSS---ELER------K-IK--AYEQACIDVAF 421 (442)
Q Consensus 360 ~~~~~~~~~~~~~~v~~~~~--s~~-g~~l~~g~---~dg~i~iwd~~~~---~~~~------~-~~--~~~~~v~~~~~ 421 (442)
+.+.+|... ...+.. .+. ...++.+. ..++++|.++... .... . +. .-.+.-.++..
T Consensus 192 ---Q~iegha~~--F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 192 ---QPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred ---hhhhHhHhh--hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 222222211 111111 111 12222221 1368888888542 1100 0 00 01223345666
Q ss_pred cCCCCCEEEEeeCCCcEEEcC
Q 013475 422 HPILPNIIGSCSWNGDVSVYE 442 (442)
Q Consensus 422 ~p~~~~~l~s~~~dg~i~iwd 442 (442)
++.. .++...+.-|.|.+||
T Consensus 267 s~k~-g~iy~itk~G~~~~~d 286 (1630)
T 1xi4_A 267 SEKH-DVVFLITKYGYIHLYD 286 (1630)
T ss_pred cccc-CEEEEEecCceEEEEe
Confidence 6666 4666777788888776
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.72 E-value=1.1 Score=40.36 Aligned_cols=217 Identities=9% Similarity=-0.091 Sum_probs=100.5
Q ss_pred ceeEEEeCC-C-CCEEEEEecCCcEEEEECCCCcEEEeee--------------------CCcceEEEEEccCCCCEEEE
Q 013475 192 AVNDVKWSQ-Q-GLFVLSCGYDCSSRLVDVEKGIETQSFR--------------------EELAVRVVKFHPENSNLFLS 249 (442)
Q Consensus 192 ~v~~l~~~~-~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~l~~ 249 (442)
.|.+|++.+ + ...|..+...+.|...+ +.++.-..+. ....+.+|.+.|.+...++.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 578899987 2 45566666666555443 2233222221 12357889998854344555
Q ss_pred eeCCCcEEEEECCCCceEEEecc--C-----------CCCEeEEEEeeC-CCEEEeccCCCCCcCCCCeEEEEeCCCCcc
Q 013475 250 GGSKGLLRLWDIRTGKVAHEYIQ--S-----------LGPILDVEFTIN-GKQFVSSSDVSGSNMSENSIVVWDVSREVP 315 (442)
Q Consensus 250 ~~~dg~i~iwd~~~~~~~~~~~~--~-----------~~~i~~~~~~~~-~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~ 315 (442)
+..++.|...+- .++.-..+.. . ...+.+|.+.++ ...+..+. .+.|...+-. +..
T Consensus 195 g~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--------~~gl~~s~D~-G~t 264 (394)
T 3b7f_A 195 GMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--------HCGIYRMDRR-EGV 264 (394)
T ss_dssp EEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--------TTEEEEEETT-TTE
T ss_pred EECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--------CCeEEEeCCC-CCc
Confidence 544444444322 2222122211 0 124788898885 35566655 3445444322 211
Q ss_pred cceeec-ccc---ceeeeEEecCC-CCeeEEEeC-----------CCeEEEeeCCCC-cccccceeEeeccc-c----cC
Q 013475 316 LSKQVY-VEA---YTCPCVRHHPF-DPYFVAQSN-----------GNYIAIFSSTPP-FRLDKFKRYESHGV-S----GF 373 (442)
Q Consensus 316 ~~~~~~-~~~---~~~~~~~~~~~-~~~l~~~~~-----------~~~i~i~~~~~~-~~~~~~~~~~~~~~-~----~~ 373 (442)
...+.. ... ..+..+.++|. ...+.++.. ++...+|...+. .....+. .+... . ..
T Consensus 265 W~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~ 342 (394)
T 3b7f_A 265 WKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVK 342 (394)
T ss_dssp EECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCC
T ss_pred ceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEE
Confidence 111111 011 22456777763 344444431 222344443332 2221111 01010 0 11
Q ss_pred cEEEEEccC-CCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEc
Q 013475 374 PIKCSFSLD-GEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFH 422 (442)
Q Consensus 374 v~~~~~s~~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 422 (442)
...++++|. ...|+.++.++.|+.-+ +.++.-..+..+-..+.+|+|.
T Consensus 343 ~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 343 RQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp TBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 235778774 45577776666655433 3454444454444467777764
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.13 E-value=2 Score=39.63 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=61.1
Q ss_pred CceeEEEeCCCCC-EEEEEecCCcEEEEECCCCc---EEEeee----C------CcceEEEEEccC---CCCEEEEeeC-
Q 013475 191 AAVNDVKWSQQGL-FVLSCGYDCSSRLVDVEKGI---ETQSFR----E------ELAVRVVKFHPE---NSNLFLSGGS- 252 (442)
Q Consensus 191 ~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~~~---~~~~~~----~------~~~v~~~~~~~~---~~~~l~~~~~- 252 (442)
..-..|+|.|++. .|+++...|.|++++..... .+..+. . ......|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3457899999986 45556778999999754321 122211 1 356889999986 2234333221
Q ss_pred -C----------CcEEEEECCC----------CceEEEec--cCCCCEeEEEEeeCCCEEEeccC
Q 013475 253 -K----------GLLRLWDIRT----------GKVAHEYI--QSLGPILDVEFTINGKQFVSSSD 294 (442)
Q Consensus 253 -d----------g~i~iwd~~~----------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 294 (442)
+ ..|.-|.+.. .+.+..+. ........|.|.|||.++++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 12333332 12234678999999998888765
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.40 E-value=2.1 Score=36.48 Aligned_cols=218 Identities=6% Similarity=-0.061 Sum_probs=107.8
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEE-EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEE
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIET-QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHE 269 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (442)
..|..|+.... +.+.-. ||.|+.|-....-.+ ........|..++.... ..++. . ||.|+.|-....-.+..
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 46777776544 223234 899999976543211 11112345667776543 33333 4 89999998654322111
Q ss_pred eccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEE
Q 013475 270 YIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIA 349 (442)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 349 (442)
-..-...|..++...+...+++ +|.|..|-......+... ......+..++... .+.++-. ++.++
T Consensus 97 P~~~~~~v~~ia~G~~hs~al~----------~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G~--~~~~~l~-~G~v~ 162 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAWASYALK----------DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGGV--YTALAVK-NGGVI 162 (282)
T ss_dssp CGGGSSSEEEEEEETTEEEEEE----------TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECS--SEEEEEE-TTEEE
T ss_pred CcccCCCeEEEECcCCEEEEEe----------CCeEEEecCCCCCcCCCC-ccCCCCeEEEEccc--CEEEEEE-CCEEE
Confidence 1111246776666543333333 378888876553322111 11122344444332 2233333 78899
Q ss_pred EeeCCCCcccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEE
Q 013475 350 IFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNII 429 (442)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 429 (442)
.|-......+.. . ......+..++...+ +.+.- .||.|+.|=....-.+..-......|..|+..... .+
T Consensus 163 ~wG~n~~gqlg~-p----~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~ 232 (282)
T 3qhy_B 163 AWGDNYFGQTTV-P----AEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SL 232 (282)
T ss_dssp EEECCTTSTTSC-C----GGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EE
T ss_pred EecCCCCCCCCC-c----eecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EE
Confidence 997765433311 0 011133555554333 22333 58999999654321111111112356777766553 33
Q ss_pred EEeeCCCcEEEc
Q 013475 430 GSCSWNGDVSVY 441 (442)
Q Consensus 430 ~s~~~dg~i~iw 441 (442)
+.. ||.|+.|
T Consensus 233 al~--~g~v~~w 242 (282)
T 3qhy_B 233 ALK--NGKVIAW 242 (282)
T ss_dssp EEE--TTEEEEE
T ss_pred EEE--CCEEEEe
Confidence 333 8888877
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.92 E-value=3.4 Score=37.10 Aligned_cols=99 Identities=11% Similarity=-0.053 Sum_probs=48.8
Q ss_pred CEEEEecCCCcEEEEEccc--CCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCC----cEEEEECCCCcEEEeeeC-
Q 013475 159 HLLASAGMDQSICIWNVWS--RDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDC----SSRLVDVEKGIETQSFRE- 230 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~- 230 (442)
..|..|...| +.+++... ........ ......|.+|++.| +...|.+++..| .|... .+.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 3566677666 55555322 11222211 12346799999998 334455555454 34332 233332222211
Q ss_pred --------------CcceEEEEEccCC-CCEEEEeeCCCcEEEEE
Q 013475 231 --------------ELAVRVVKFHPEN-SNLFLSGGSKGLLRLWD 260 (442)
Q Consensus 231 --------------~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd 260 (442)
...|.++++.|.+ ...+.++...+.|...+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~ 144 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST 144 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence 1247788898742 34556665556555543
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.75 E-value=4.2 Score=37.52 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=57.9
Q ss_pred cceEEEEeeCCCCC-EEEEecCCCcEEEEEcccCC-cceeeeec---------cCCCceeEEEeCCC----CCEEEEEec
Q 013475 146 KAVNSINWSPTHAH-LLASAGMDQSICIWNVWSRD-QKLARVLN---------FHSAAVNDVKWSQQ----GLFVLSCGY 210 (442)
Q Consensus 146 ~~V~~~~~s~~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~---------~h~~~v~~l~~~~~----~~~l~s~~~ 210 (442)
..-+.|+|.|+ +. .|+.+...|.|++++..... ...+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 44578999999 64 34445678999999753221 11112111 11456789999996 333333222
Q ss_pred --C----------CcEEEEECCC----------CcEEEeee---CCcceEEEEEccCCCCEEEEeeC
Q 013475 211 --D----------CSSRLVDVEK----------GIETQSFR---EELAVRVVKFHPENSNLFLSGGS 252 (442)
Q Consensus 211 --d----------~~v~vwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~ 252 (442)
+ ..|.-|.+.. .+.+..+. .......|.|.||| .++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCC
Confidence 1 1344465542 12232222 23456889999997 55555443
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.37 E-value=5.7 Score=35.35 Aligned_cols=187 Identities=6% Similarity=-0.026 Sum_probs=99.3
Q ss_pred cEEEEECCCC--cEEEeeeC-------CcceEEEEEc---cC---CCCE-EEEeeCCCcEEEEECCCCceEEEeccCCCC
Q 013475 213 SSRLVDVEKG--IETQSFRE-------ELAVRVVKFH---PE---NSNL-FLSGGSKGLLRLWDIRTGKVAHEYIQSLGP 276 (442)
Q Consensus 213 ~v~vwd~~~~--~~~~~~~~-------~~~v~~~~~~---~~---~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 276 (442)
+|.+||+.++ +.++.+.. ...+..+++. +. +..+ .++-...+.|.++|+.+++.-+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5778999998 88887762 3457888887 22 1233 334345678999999998765544211
Q ss_pred EeEEEEeeCCC-EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCC----CCeeEEEeCCC-eEEE
Q 013475 277 ILDVEFTINGK-QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPF----DPYFVAQSNGN-YIAI 350 (442)
Q Consensus 277 i~~~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~-~i~i 350 (442)
|.|+.. .+.. +|.-..| ...+..++++|+ ++.|......+ .++-
T Consensus 201 -----~~pd~~~~~~i----------~G~~~~~---------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 -----FKAERPTKFDY----------GGKEYEF---------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp -----GSCCSCEEEEE----------TTEEEEE---------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred -----CccccCcceEE----------CCEEeEe---------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 233311 1111 1221111 124666777776 55555544333 3333
Q ss_pred ee---CCCCcccccceeEeecccccCcEEEEEc-cCCCEEEEecCCCcEEEEecCC-c---eeeEeeec--cCCceeEEE
Q 013475 351 FS---STPPFRLDKFKRYESHGVSGFPIKCSFS-LDGEKLVSGSSDGSIYFYNCRS-S---ELERKIKA--YEQACIDVA 420 (442)
Q Consensus 351 ~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~dg~i~iwd~~~-~---~~~~~~~~--~~~~v~~~~ 420 (442)
.. ++.......++.+-..........+++. .+|.++++--..+.|..|+..+ . +....+.. .-..+.++.
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~ 330 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDIS 330 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEE
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEE
Confidence 32 1111111122222221111223356675 6788788888889999999875 1 11222221 123567888
Q ss_pred EcCCCCCEEEEee
Q 013475 421 FHPILPNIIGSCS 433 (442)
Q Consensus 421 ~~p~~~~~l~s~~ 433 (442)
+..++ .+.+..+
T Consensus 331 i~~~g-~Lwv~sn 342 (381)
T 3q6k_A 331 VDSKG-GLWFMSN 342 (381)
T ss_dssp ECTTS-CEEEEEC
T ss_pred ECCCC-eEEEEEC
Confidence 88887 5555543
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.13 E-value=5.6 Score=34.68 Aligned_cols=270 Identities=10% Similarity=0.026 Sum_probs=135.3
Q ss_pred CCEEEEecCCCcEEEEEcccCC-------cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEE---CCC------
Q 013475 158 AHLLASAGMDQSICIWNVWSRD-------QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVD---VEK------ 221 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd---~~~------ 221 (442)
..++++-+.+|.|+--.+.+-. ......++ ....+..+........|+.-+..|.++-.. +..
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 4567788888888876542210 11111222 234455554444555666666777766544 332
Q ss_pred CcEEE---eeeCCcceEEEEEccC--CCCEEEEeeCCCcEEEEECCCCc-------eEEEeccCCCCEeEEEEeeCCCEE
Q 013475 222 GIETQ---SFREELAVRVVKFHPE--NSNLFLSGGSKGLLRLWDIRTGK-------VAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 222 ~~~~~---~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
|..+. .+.....|..+....+ ...+++..+.+|.|+-..+.... ....++. ...+..+........+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 22211 1234555665544332 24789999999999998875421 1222333 3455555555555666
Q ss_pred EeccCCCCCcCCCCeEEEEeCC--CCcc-------cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccc
Q 013475 290 VSSSDVSGSNMSENSIVVWDVS--REVP-------LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD 360 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 360 (442)
+..+. .|.+..+... .-.. +.-+.......+..+.....+.+++..+..|.++...+..-....
T Consensus 161 ll~T~-------~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~ 233 (327)
T 3uc1_A 161 LLVSA-------NGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQG 233 (327)
T ss_dssp EEEET-------TSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred EEEEC-------CCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccC
Confidence 66665 8988888776 3111 111222233456666666667788899999988887654322110
Q ss_pred c----ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCcee-------eEeeec-cCCceeEEEEcCCCCCE
Q 013475 361 K----FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSEL-------ERKIKA-YEQACIDVAFHPILPNI 428 (442)
Q Consensus 361 ~----~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~-------~~~~~~-~~~~v~~~~~~p~~~~~ 428 (442)
. +..+......+.+..+....+...++..+.+|.+.-++...-.. +.-+.- ....|.++...+.....
T Consensus 234 R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~ 313 (327)
T 3uc1_A 234 RGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGD 313 (327)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-----
T ss_pred cCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcce
Confidence 0 11111111123344444444455677777788877776543111 111111 23456666655443245
Q ss_pred EEEeeCCC
Q 013475 429 IGSCSWNG 436 (442)
Q Consensus 429 l~s~~~dg 436 (442)
+.+.+.+|
T Consensus 314 ~~~~~~~g 321 (327)
T 3uc1_A 314 DNAVDANG 321 (327)
T ss_dssp --------
T ss_pred EEEEecCC
Confidence 66555554
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.31 E-value=8.2 Score=33.26 Aligned_cols=236 Identities=10% Similarity=0.057 Sum_probs=119.3
Q ss_pred CCEEEEecCCCcEEEEEcccCC-------cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC---C------
Q 013475 158 AHLLASAGMDQSICIWNVWSRD-------QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE---K------ 221 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~---~------ 221 (442)
..++++.+.+|.|+--.+.+-. ......++.+ ..+..+........|+..+..|.++-+... .
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 5678888899999876653210 0111122322 334344334445566667778876665542 2
Q ss_pred CcEEE---eeeCCcceEEEEEcc--CCCCEEEEeeCCCcEEEEECCC-------CceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 222 GIETQ---SFREELAVRVVKFHP--ENSNLFLSGGSKGLLRLWDIRT-------GKVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 222 ~~~~~---~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
|..+. .+.....|..+.... +...+++..+.+|.++-..+.. +.....+..+ +.+..+....+...+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 22211 233455566654422 1235788889999999987742 1121223333 556555555455556
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCccc-------ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc-
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVPL-------SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK- 361 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~- 361 (442)
+..+. +|.+..++...-... .-+.......+..+....++..+++.+..|..+-.++..-.....
T Consensus 161 ~l~T~-------~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 161 MLFSA-------EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp EEEET-------TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred EEECC-------CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence 55555 888888876431111 112222334455555555566788888888888776633211100
Q ss_pred ---ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 362 ---FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 362 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
..........+.+..+....+...|+..+.+|.+.-++...
T Consensus 234 ~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 234 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 01111111123344444333445556666677766666543
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.24 E-value=7.8 Score=32.90 Aligned_cols=240 Identities=8% Similarity=-0.043 Sum_probs=121.6
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC-cEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG-IET 225 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~ 225 (442)
.|..++.... ..++. . ||.|..|-.......-+ -......|..++...+.. ++. . ||.|+.|-.... +.-
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCC
Confidence 5667766543 23333 4 88999997643321111 111234677777654433 333 4 899999976542 211
Q ss_pred EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeE
Q 013475 226 QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSI 305 (442)
Q Consensus 226 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i 305 (442)
........|..++.-.. ..+.-. ||.|+.|-......+.........|..++...+ ..+.-. ||.|
T Consensus 96 ~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~--------~G~v 161 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK--------NGGV 161 (282)
T ss_dssp CCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE--------TTEE
T ss_pred CCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE--------CCEE
Confidence 11112446777777543 333334 899999986543221111112245666654322 222222 6788
Q ss_pred EEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecccccCcEEEEEccCCCE
Q 013475 306 VVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEK 385 (442)
Q Consensus 306 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 385 (442)
..|-......+... ......+..++... .+.++- .++.++.|-......+-. . ......|..++...+..+
T Consensus 162 ~~wG~n~~gqlg~p-~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~-p----~~~~~~v~~i~~G~~h~~ 232 (282)
T 3qhy_B 162 IAWGDNYFGQTTVP-AEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTV-P----TEALSGVSAIASGEWYSL 232 (282)
T ss_dssp EEEECCTTSTTSCC-GGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCC-C----GGGGSSCCEEEECSSCEE
T ss_pred EEecCCCCCCCCCc-eecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCC-C----cccCCCceEEEcCCCEEE
Confidence 88876653332211 11122344444433 233333 589999997665433311 0 011123555554443323
Q ss_pred EEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCC
Q 013475 386 LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPIL 425 (442)
Q Consensus 386 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 425 (442)
++ . ||.|+.|=......+.. ...|.+|+.....
T Consensus 233 al--~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 233 AL--K-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp EE--E-TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred EE--E-CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 33 3 89999997654333221 3467777777664
No 358
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=90.11 E-value=9.7 Score=33.80 Aligned_cols=148 Identities=11% Similarity=-0.020 Sum_probs=85.1
Q ss_pred eCCCCCEEEEEecCCcEEEEECCC---------CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEEC---CC--
Q 013475 198 WSQQGLFVLSCGYDCSSRLVDVEK---------GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDI---RT-- 263 (442)
Q Consensus 198 ~~~~~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~-- 263 (442)
+-++..++++.+.+|.|+--.+.. +..-..++....+..+...... ..|+..+..|.++-+.. ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~-d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTH-DTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCC-CEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778899999999999865432 2333445556666666555543 55666677787666543 21
Q ss_pred ----CceEEE---eccCCCCEeEEEEee---CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc-----cceeeccccceee
Q 013475 264 ----GKVAHE---YIQSLGPILDVEFTI---NGKQFVSSSDVSGSNMSENSIVVWDVSREVP-----LSKQVYVEAYTCP 328 (442)
Q Consensus 264 ----~~~~~~---~~~~~~~i~~~~~~~---~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~ 328 (442)
|..+.. +. ....|.++.... ++.+|+..+. .|.++...+..... +..+.......+.
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~-------~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv 153 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATR-------NGTVKKTPLSEFAFRLARGKIAINLDEGDALV 153 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEET-------TSEEEEEEGGGGCSCCTTCEESSCCCTTCCEE
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeC-------CCeEEEeEHHHhhcccCCceEEEEeCCCCEEE
Confidence 222111 22 234566554432 4567888887 99999887643221 1111122233344
Q ss_pred eEEecCCCCeeEEEeCCCeEEEeeCC
Q 013475 329 CVRHHPFDPYFVAQSNGNYIAIFSST 354 (442)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~i~i~~~~ 354 (442)
.+........++..+..|.+..|...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 44444455677777888887777654
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.00 E-value=8 Score=39.45 Aligned_cols=38 Identities=5% Similarity=0.109 Sum_probs=33.4
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR 229 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 229 (442)
.+.++...++..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777888888899999999999999999999988764
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.92 E-value=18 Score=35.36 Aligned_cols=232 Identities=10% Similarity=0.004 Sum_probs=117.1
Q ss_pred eEEE-eCCCCCEEEEEec-----CCcEEEEECCCCcEEEe-eeC--Cc------ceEEEEEccCCCCEEEEee-------
Q 013475 194 NDVK-WSQQGLFVLSCGY-----DCSSRLVDVEKGIETQS-FRE--EL------AVRVVKFHPENSNLFLSGG------- 251 (442)
Q Consensus 194 ~~l~-~~~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~-~~~--~~------~v~~~~~~~~~~~~l~~~~------- 251 (442)
..+. ++|++++++.+-. -..++++|+.+++.+.. |.. +. ....++|..+ ..++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 4455 8889887776432 24699999999877631 220 11 1134477643 34444321
Q ss_pred ---CCCcEEEEECCCCc--eEEEeccCCCCE-eEEEEeeCCCE-----EEeccCCCCCcCCCCeEEEEeCCCCc-cccee
Q 013475 252 ---SKGLLRLWDIRTGK--VAHEYIQSLGPI-LDVEFTINGKQ-----FVSSSDVSGSNMSENSIVVWDVSREV-PLSKQ 319 (442)
Q Consensus 252 ---~dg~i~iwd~~~~~--~~~~~~~~~~~i-~~~~~~~~~~~-----l~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~ 319 (442)
....|+.|.+-+.. -...+.+....+ .....+.++++ +++.+.. .....+.+.|..... .+..+
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~l 286 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKD----FYNYDNYILDTKYKNLKLQKI 286 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESS----SSCEEEEEEECSSSSCEEEEC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecc----cCceeEEEEcCCCCCCcceEe
Confidence 12468888876542 222333332222 23444556652 3332210 013566777765321 12222
Q ss_pred eccccceeeeEEecCCCCeeEEE----------eCCCeEEEeeCCCCcc----cccceeEeecccccCcEEEEEccCCCE
Q 013475 320 VYVEAYTCPCVRHHPFDPYFVAQ----------SNGNYIAIFSSTPPFR----LDKFKRYESHGVSGFPIKCSFSLDGEK 385 (442)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~i~i~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~~ 385 (442)
....... +..+..+.+++.. ...+.|...++..... ......+..+.....+..+.+..+ .+
T Consensus 287 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 287 NMPSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp CSCTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred ecCCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 2222211 2233455554432 1356788888765421 112233233333445667788765 56
Q ss_pred EEEecCCCc--EEEEecCCce-eeEe-eecc-CCceeEEEEcCCCCCEEEEeeC
Q 013475 386 LVSGSSDGS--IYFYNCRSSE-LERK-IKAY-EQACIDVAFHPILPNIIGSCSW 434 (442)
Q Consensus 386 l~~g~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~~p~~~~~l~s~~~ 434 (442)
+++...++. |+++|+.+++ .... +... .+.+..+.+.+++..++++.+.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Confidence 666666664 6777876664 2333 2211 3456667777777566666543
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.11 E-value=11 Score=31.83 Aligned_cols=154 Identities=8% Similarity=-0.016 Sum_probs=91.2
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEE---EcccCCcceeeeeccCCCceeEEEeCC-CCCEEEEEecCCcEEEEECCC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIW---NVWSRDQKLARVLNFHSAAVNDVKWSQ-QGLFVLSCGYDCSSRLVDVEK 221 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iw---d~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~ 221 (442)
+.+..+..... ..+|+.-+.+|.++-- ++......-+ +. ....|..+.... +..+++.++.+|.++...+..
T Consensus 24 D~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 45666655555 4455556667876643 3322211112 43 456666664421 467899999999999998765
Q ss_pred C------cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC---------CceEEEeccCCCCEeEEEEeeCC
Q 013475 222 G------IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT---------GKVAHEYIQSLGPILDVEFTING 286 (442)
Q Consensus 222 ~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~~~~~ 286 (442)
- .....++....+..+..... ...++..+..|.++.+.... |.....+.. ...|..+....++
T Consensus 100 ~~~~~~G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~ 177 (276)
T 3no0_A 100 FEYKAQGMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGE 177 (276)
T ss_dssp TTTCSTTEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSC
T ss_pred hhhhcCCeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCC
Confidence 3 22223344556666655544 35677788889988887532 111112222 2566666655666
Q ss_pred CEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 287 KQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 287 ~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
..++..+. .|.++...+..
T Consensus 178 ~~ll~~T~-------~G~~kr~~~~e 196 (276)
T 3no0_A 178 PYLLVITA-------KGRVKKISHEE 196 (276)
T ss_dssp SEEEEEET-------TSCEEEEEGGG
T ss_pred CEEEEEeC-------CCcEEEeEHHH
Confidence 67777776 88888887653
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=86.17 E-value=18 Score=32.28 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=116.8
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc---------ceeeeec-cCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ---------KLARVLN-FHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
.|..++-. ....+.-..||.|..|-...... .....+. .....+..++.+....+.+.-..||.|+.
T Consensus 54 ~i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 34455443 33444455678888886422100 0111111 12234555666666667777788999999
Q ss_pred EECCCC-----------cEEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-c----------eEEEec-
Q 013475 217 VDVEKG-----------IETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-K----------VAHEYI- 271 (442)
Q Consensus 217 wd~~~~-----------~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~----------~~~~~~- 271 (442)
|-.... .....+. ....|..++.- ....+.-..+|.|+.|-.... + ....+.
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence 965321 0111122 22356666663 355566677999999975421 1 111111
Q ss_pred cCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc-----------eeeccccceeeeEEecCCCCeeE
Q 013475 272 QSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS-----------KQVYVEAYTCPCVRHHPFDPYFV 340 (442)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~ 340 (442)
.....|..++......+.+.... ++.|..|-......+- .+.......+..++. ...+.+
T Consensus 208 ~~~~~v~~ia~G~g~~~t~~l~~-------~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~ 278 (389)
T 3kci_A 208 LQGHRVVDIACGSGDAQTLCLTD-------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSV 278 (389)
T ss_dssp GTTSCEEEEEECCSSCEEEEEET-------TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEE
T ss_pred cCCCeEEEEEEcCCCcEEEEEcc-------CCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEE
Confidence 12235666665432234444444 8999999754322110 011111112333332 234455
Q ss_pred EEeCCCeEEEeeCCCCcccc-----cceeEee--cccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 341 AQSNGNYIAIFSSTPPFRLD-----KFKRYES--HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 341 ~~~~~~~i~i~~~~~~~~~~-----~~~~~~~--~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+-..++.|+.|-......+- ....... ......|..++. ...+.++-..||.|+.|=..
T Consensus 279 alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 279 ALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence 56788899999765422210 0000000 001122334433 33455555778999999654
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.43 E-value=18 Score=31.44 Aligned_cols=235 Identities=8% Similarity=-0.027 Sum_probs=120.8
Q ss_pred CCEEEEecCCCcEEEEEcccCC--cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC---C------CcEEE
Q 013475 158 AHLLASAGMDQSICIWNVWSRD--QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE---K------GIETQ 226 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~---~------~~~~~ 226 (442)
..++++.+.+|.|+--.+..-. ......++.. ..+..+........|+..+..|.++-+... . |..+.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 5678888999999887653110 1111223323 344444444455567777778887665542 2 22111
Q ss_pred ---eeeCCcceEEEEEccC--CCCEEEEeeCCCcEEEEECCC--------CceEEEeccCCCCEeEEEEeeCCCEEEecc
Q 013475 227 ---SFREELAVRVVKFHPE--NSNLFLSGGSKGLLRLWDIRT--------GKVAHEYIQSLGPILDVEFTINGKQFVSSS 293 (442)
Q Consensus 227 ---~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (442)
.+.....|..+....+ ...+++..+.+|.++...+.. +.....+... +.+..+........++..+
T Consensus 84 ~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T 162 (323)
T 1wp5_A 84 NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVT 162 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEE
T ss_pred hccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEe
Confidence 1233445665433332 135688889999999988742 1111223322 5565555555555666666
Q ss_pred CCCCCcCCCCeEEEEeCCCCcc-------cceeeccccceeeeEEecCCCC-eeEEEeCCCeEEEeeCCCCccccc----
Q 013475 294 DVSGSNMSENSIVVWDVSREVP-------LSKQVYVEAYTCPCVRHHPFDP-YFVAQSNGNYIAIFSSTPPFRLDK---- 361 (442)
Q Consensus 294 ~~~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~---- 361 (442)
. +|.+..+....-.. +.-+.......+..+....++. .+++.+..|..+..++..-.....
T Consensus 163 ~-------~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG 235 (323)
T 1wp5_A 163 H-------NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG 235 (323)
T ss_dssp T-------TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC
T ss_pred C-------CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC
Confidence 5 88888887643111 1112222333455554434444 678888888877766543111100
Q ss_pred ceeEeec-ccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 362 FKRYESH-GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 362 ~~~~~~~-~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
....... .....+..+....++..++..+.+|.+.-+++.
T Consensus 236 v~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 236 VVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 0111100 111133333333334556666677777666654
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.41 E-value=17 Score=31.31 Aligned_cols=193 Identities=9% Similarity=-0.022 Sum_probs=107.0
Q ss_pred CCCCEEEEEecCCcEEEEECCCCcE-------E--EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC---C---
Q 013475 200 QQGLFVLSCGYDCSSRLVDVEKGIE-------T--QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT---G--- 264 (442)
Q Consensus 200 ~~~~~l~s~~~d~~v~vwd~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~--- 264 (442)
++..++++.+.+|.|+--.+..-+. + ..++....+..+..... ...++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~-~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT-HDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC-CCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4566788899999999887654321 1 12234444555444444 35667777888877765531 1
Q ss_pred ---ce---EEEeccCCCCEeEEEEee---CCCEEEeccCCCCCcCCCCeEEEEeCCCCcc-----cceeeccccceeeeE
Q 013475 265 ---KV---AHEYIQSLGPILDVEFTI---NGKQFVSSSDVSGSNMSENSIVVWDVSREVP-----LSKQVYVEAYTCPCV 330 (442)
Q Consensus 265 ---~~---~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~ 330 (442)
.. ...+.. ...|..+.... +..+++..+. .|.++...+..... +..+.......+..+
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~-------~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~ 156 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTA-------SGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSA 156 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEET-------TSEEEEEEGGGGCC----CEECBCCCTTCCEEEE
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeC-------CCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEE
Confidence 11 011222 23455554332 4566777776 89999887743211 111222233445555
Q ss_pred EecCCCCeeEEEeCCCeEEEeeCCCCccccc----ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCC
Q 013475 331 RHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK----FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRS 402 (442)
Q Consensus 331 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~ 402 (442)
.....+..++..+.+|.+..+....-..... ...... .....+..+..-.++..|++.+..|..+..++..
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 5545566788888999888887654211110 111111 1134455665555667788889999999888753
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.90 E-value=16 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=32.7
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
.+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45677788888999999999999999999999887653
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=83.04 E-value=25 Score=31.21 Aligned_cols=148 Identities=9% Similarity=0.023 Sum_probs=86.1
Q ss_pred eCCCCCEEEEecCCCcEEEEEcccC-------CcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECC---C--
Q 013475 154 SPTHAHLLASAGMDQSICIWNVWSR-------DQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVE---K-- 221 (442)
Q Consensus 154 s~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~---~-- 221 (442)
-++ ..++++.+.+|.|+--.+..- .......++ ....+..+........|+..+..|.++-+... .
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 355 678999999999998765321 112233344 34556555555555667777778877665532 2
Q ss_pred ----CcEEE---eeeCCcceEEEEEcc--CCCCEEEEeeCCCcEEEEECCCC-------ceEEEeccCCCCEeEEEEeeC
Q 013475 222 ----GIETQ---SFREELAVRVVKFHP--ENSNLFLSGGSKGLLRLWDIRTG-------KVAHEYIQSLGPILDVEFTIN 285 (442)
Q Consensus 222 ----~~~~~---~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~ 285 (442)
|..+. .+.....|.++.... +...+|+.++..|.++...+... .....+.. ...+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 22221 133455566554432 12368889999999999886432 12222332 345555555555
Q ss_pred CCEEEeccCCCCCcCCCCeEEEEeCC
Q 013475 286 GKQFVSSSDVSGSNMSENSIVVWDVS 311 (442)
Q Consensus 286 ~~~l~~~~~~~~~~~~d~~i~iwd~~ 311 (442)
...++..+. +|.+..++..
T Consensus 161 ~~~i~l~T~-------~G~~irf~~~ 179 (370)
T 3l6v_A 161 DRDVLLFAS-------NGKTVRFGES 179 (370)
T ss_dssp CCEEEEEET-------TSEEEEEEGG
T ss_pred CceEEEEeC-------CCeEEEEEcc
Confidence 555666665 7888877754
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.83 E-value=23 Score=30.75 Aligned_cols=156 Identities=6% Similarity=0.014 Sum_probs=89.0
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcc---cC----Cccee---eeeccCCCceeEEEeCC---CCCEEEEEecCC
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVW---SR----DQKLA---RVLNFHSAAVNDVKWSQ---QGLFVLSCGYDC 212 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~---~~----~~~~~---~~~~~h~~~v~~l~~~~---~~~~l~s~~~d~ 212 (442)
+.+..+..... ...|+.-+..|.++-.... .. .+..+ ..+. ....|..+.... +..++++++.+|
T Consensus 42 D~~~~~~~~~t-~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 42 DIVAHFFVCST-HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GCEEEEEEEET-TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CEEEEEEEeCC-CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 34444444444 4455555667766655432 11 11111 1122 244555554333 577999999999
Q ss_pred cEEEEECCCC-------cEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECC--CC---------ceEEEeccCC
Q 013475 213 SSRLVDVEKG-------IETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIR--TG---------KVAHEYIQSL 274 (442)
Q Consensus 213 ~v~vwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~---------~~~~~~~~~~ 274 (442)
.|+.-.+... .....++....+..+...... ..|+..+..|.+..+... .- .....+. ..
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~-d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAG-DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-ID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTT-CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TT
T ss_pred EEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCC-CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CC
Confidence 9999887542 222233345555555554443 567777888988888765 21 1111122 23
Q ss_pred CCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 275 GPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
..|.++....++.+++..+. .|.++.-.+..
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~-------~G~~Krt~l~e 228 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATS-------GGYAKRTAIEE 228 (327)
T ss_dssp CCEEEEEECCTTCEEEEEET-------TSEEEEEEGGG
T ss_pred CEEEEEEEECCCCEEEEEeC-------CCcEEEEEHHH
Confidence 46777766666667777777 89988887643
No 368
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.03 E-value=43 Score=33.30 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=75.3
Q ss_pred ccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeecc-------CCCceeEEEeCCC-CCEEEEEecCCc---
Q 013475 145 TKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNF-------HSAAVNDVKWSQQ-GLFVLSCGYDCS--- 213 (442)
Q Consensus 145 ~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~~~~-~~~l~s~~~d~~--- 213 (442)
.+.|.+|+++|.+...++.+...+.|...+ ++ .+.-..+.. ....|.+|++.|. ...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 468999999997566677777667665544 22 222222221 1246999999984 344544443211
Q ss_pred -EEEE-ECCCCcEEEeeeC----------CcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-CceEEEec------cCC
Q 013475 214 -SRLV-DVEKGIETQSFRE----------ELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-GKVAHEYI------QSL 274 (442)
Q Consensus 214 -v~vw-d~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~------~~~ 274 (442)
-.|| ..+.|+.-..+.. ...+..++++|.+...++.+...+.| |-... ++.=..+. ...
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCC
Confidence 3344 3444544433321 01356788888655666666644443 32222 22211111 112
Q ss_pred CCEeEEEEeeC-CCEEEecc
Q 013475 275 GPILDVEFTIN-GKQFVSSS 293 (442)
Q Consensus 275 ~~i~~~~~~~~-~~~l~~~~ 293 (442)
..+..+.++|. +..++.+.
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASA 188 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEE
T ss_pred CCeEEEEECCCCCCEEEEEE
Confidence 45778888774 33444443
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.61 E-value=23 Score=29.88 Aligned_cols=157 Identities=8% Similarity=-0.003 Sum_probs=92.5
Q ss_pred ccceEEEEeeCC-CCCEEEEecCCCcEEEEEcccCC----cceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEEC
Q 013475 145 TKAVNSINWSPT-HAHLLASAGMDQSICIWNVWSRD----QKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV 219 (442)
Q Consensus 145 ~~~V~~~~~s~~-~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~ 219 (442)
...|..+.. .+ +..+++..+.+|.|+-..+..-. ......++ ....+..+....+...|+..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 455666543 31 26789999999999999875431 11222233 2345555555555667888888999888876
Q ss_pred CC---------CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCC-------CceEEEeccCCCCEeEEEEe
Q 013475 220 EK---------GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT-------GKVAHEYIQSLGPILDVEFT 283 (442)
Q Consensus 220 ~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~~ 283 (442)
.. |.....+.....|..+....++ ..++..+..|.++...+.. ++-+..+ ...+.+..+...
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 43 2222233445666666655543 6778888899999888743 2223333 233455554443
Q ss_pred eCCCEEEeccCCCCCcCCCCeEEE--EeCCC
Q 013475 284 INGKQFVSSSDVSGSNMSENSIVV--WDVSR 312 (442)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~d~~i~i--wd~~~ 312 (442)
.+...++..+. +|.+.. ++...
T Consensus 223 ~~~~~i~~~t~-------~G~~ir~~~~~~~ 246 (276)
T 3no0_A 223 KEEVELLITTK-------NGKAFYDKINQKD 246 (276)
T ss_dssp SSEEEEEEEET-------TSCEEEEEEEGGG
T ss_pred CCCCEEEEEcC-------CCeEEEeeeCHHH
Confidence 33344555554 677777 76543
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.36 E-value=49 Score=32.89 Aligned_cols=61 Identities=5% Similarity=0.020 Sum_probs=38.5
Q ss_pred CCceeEEEeCCC-CCEEEEEecCCcEEEEECCCCcEEEeeeC--------CcceEEEEEccCCCCEEEEee
Q 013475 190 SAAVNDVKWSQQ-GLFVLSCGYDCSSRLVDVEKGIETQSFRE--------ELAVRVVKFHPENSNLFLSGG 251 (442)
Q Consensus 190 ~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~~~~ 251 (442)
...|.+|+++|. ...++++...+.|...+ +.++.-..+.. ...+.++++.|.+...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999985 45666677667665554 34443333331 236999999986445555544
No 371
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.64 E-value=33 Score=30.49 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=101.5
Q ss_pred cEEEEEcccCCcceeeeecc------CCCceeEEEeC---CC----CCEEEEEe-cCCcEEEEECCCCcEEEeeeCCcce
Q 013475 169 SICIWNVWSRDQKLARVLNF------HSAAVNDVKWS---QQ----GLFVLSCG-YDCSSRLVDVEKGIETQSFREELAV 234 (442)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~------h~~~v~~l~~~---~~----~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~v 234 (442)
.|.+||+.+.+.++++.+.- ....+..+.+. ++ +.++..+. ..+-|.|+|+.+++..+... ..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~~-- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH-PT-- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-GG--
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-CC--
Confidence 57889996652244444432 23457778876 22 33444443 36779999999998776553 21
Q ss_pred EEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeC----CCEEEeccCCCCCcCCCCeEEEEeC
Q 013475 235 RVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTIN----GKQFVSSSDVSGSNMSENSIVVWDV 310 (442)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~~~~~~~~d~~i~iwd~ 310 (442)
|.|+ ....++. +|.-.- + ...|..|+++|+ ++.|..... ..-++|.+
T Consensus 201 ----~~pd-~~~~~~i--~G~~~~-----------~---~~Gi~gIaLsp~~~~~~~~LYf~pl--------ss~~ly~V 251 (381)
T 3q6k_A 201 ----FKAE-RPTKFDY--GGKEYE-----------F---KAGIFGITLGDRDSEGNRPAYYLAG--------SAIKVYSV 251 (381)
T ss_dssp ----GSCC-SCEEEEE--TTEEEE-----------E---CCCEEEEEECCCCTTSCCEEEEEES--------SCSEEEEE
T ss_pred ----Cccc-cCcceEE--CCEEeE-----------e---ccCceEEEecCCcCCCCeEEEEEEC--------CCCcEEEE
Confidence 3444 1111111 222111 1 245788888887 666665553 22233433
Q ss_pred CC-----Ccccceee-cccc---ceeeeEEec-CCCCeeEEEeCCCeEEEeeCCC-CcccccceeEeecccccCcEEEEE
Q 013475 311 SR-----EVPLSKQV-YVEA---YTCPCVRHH-PFDPYFVAQSNGNYIAIFSSTP-PFRLDKFKRYESHGVSGFPIKCSF 379 (442)
Q Consensus 311 ~~-----~~~~~~~~-~~~~---~~~~~~~~~-~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 379 (442)
.+ ........ .... .....++.. .+|..+++--..+.|..|+..+ ......+..+.....-.++..+.+
T Consensus 252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i 331 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISV 331 (381)
T ss_dssp EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEE
T ss_pred EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEE
Confidence 22 11111111 1111 223345665 6777788888889999999887 443333343333333345667777
Q ss_pred ccCCCEEEEec
Q 013475 380 SLDGEKLVSGS 390 (442)
Q Consensus 380 s~~g~~l~~g~ 390 (442)
..+|.+.+..+
T Consensus 332 ~~~g~Lwv~sn 342 (381)
T 3q6k_A 332 DSKGGLWFMSN 342 (381)
T ss_dssp CTTSCEEEEEC
T ss_pred CCCCeEEEEEC
Confidence 66665544443
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.60 E-value=49 Score=32.41 Aligned_cols=243 Identities=9% Similarity=0.048 Sum_probs=116.7
Q ss_pred eEEEE-eeCCCCCEEEE-ecCC----CcEEEEEcccCCcceee-eec-cCCC------ceeEEEeCCCCCEEEEEe----
Q 013475 148 VNSIN-WSPTHAHLLAS-AGMD----QSICIWNVWSRDQKLAR-VLN-FHSA------AVNDVKWSQQGLFVLSCG---- 209 (442)
Q Consensus 148 V~~~~-~s~~~~~~l~s-~~~d----g~i~iwd~~~~~~~~~~-~~~-~h~~------~v~~l~~~~~~~~l~s~~---- 209 (442)
...+. ++|+ +++++. -|.. ..|+++|+.++ +.+. .+. .-.. ....++|..++..+++..
T Consensus 131 ~~g~~~~~~~-~~~~~~~ls~~G~d~~~~~~~d~~t~--~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~ 207 (711)
T 4hvt_A 131 YRGVSNCFQN-PNRYLISMSFGGKDEMFFREWDLEKK--DFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKN 207 (711)
T ss_dssp EEEEEECSSS-TTEEEEEEEETTCSEEEEEEEETTTT--EECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTT
T ss_pred EeceeecCCC-CCEEEEEeCCCCCceeEEEEEECCcC--CcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCC
Confidence 34455 8898 555444 3333 37999999655 3221 111 0000 113447764444444321
Q ss_pred ------cCCcEEEEECCCCc--EEEeee--CCcceEEEEEccCCCC----EEEEeeCC---CcEEEEECCC--CceEEEe
Q 013475 210 ------YDCSSRLVDVEKGI--ETQSFR--EELAVRVVKFHPENSN----LFLSGGSK---GLLRLWDIRT--GKVAHEY 270 (442)
Q Consensus 210 ------~d~~v~vwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~----~l~~~~~d---g~i~iwd~~~--~~~~~~~ 270 (442)
....|+.|.+-+.. -...+. ....-.....+.++.. .+++.+.+ ..+++.|... ++ ...+
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l 286 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKI 286 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEEC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEe
Confidence 12568888877642 223333 2222334445566543 34544322 4567777653 33 2333
Q ss_pred ccCCCCEeEEEEeeCCCEEEeccCCC-C--CcCCCCeEEEEeCCCCc-------ccce-eeccccceeeeEEecCCCCee
Q 013475 271 IQSLGPILDVEFTINGKQFVSSSDVS-G--SNMSENSIVVWDVSREV-------PLSK-QVYVEAYTCPCVRHHPFDPYF 339 (442)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~~~-~--~~~~d~~i~iwd~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~l 339 (442)
..... ..+..+.++.+++...... . .....+.|...|+.+.. .... +.......+..+.+..+ ..+
T Consensus 287 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 287 NMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp CSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred ecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 22222 1233455666666432100 0 01126789999987642 1222 22334456777888765 455
Q ss_pred EEEeCCC--eEEEeeCCCCc-cccccee-EeecccccCcEEEEEccCCCEE-EEec---CCCcEEEEecC
Q 013475 340 VAQSNGN--YIAIFSSTPPF-RLDKFKR-YESHGVSGFPIKCSFSLDGEKL-VSGS---SDGSIYFYNCR 401 (442)
Q Consensus 340 ~~~~~~~--~i~i~~~~~~~-~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l-~~g~---~dg~i~iwd~~ 401 (442)
++...++ .+.+++..++. .. .. ... ...+.+....+++++..+ ++.+ .-+.++.+|+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~---~~~i~l-p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTK---PVVLKL-PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECC---CEEECC-CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEE---EeccCC-CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5555565 46666654432 11 11 111 111334445556666544 4333 24568888876
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=78.39 E-value=32 Score=29.55 Aligned_cols=191 Identities=9% Similarity=-0.009 Sum_probs=100.2
Q ss_pred CCCEEEEEecCCcEEEEECCCCcEE---------EeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEEC---CC-----
Q 013475 201 QGLFVLSCGYDCSSRLVDVEKGIET---------QSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDI---RT----- 263 (442)
Q Consensus 201 ~~~~l~s~~~d~~v~vwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~---~~----- 263 (442)
+...+++.+.+|.|+--.+.+.+.. ..++....+..+..... ...|+..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~-~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT-HDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC-CCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 4567888899999987776543211 12233444444444333 255666677787665544 22
Q ss_pred -CceEE---EeccCCCCEeEEEEe---eCCCEEEeccCCCCCcCCCCeEEEEeCCCCccc-----ceeeccccceeeeEE
Q 013475 264 -GKVAH---EYIQSLGPILDVEFT---INGKQFVSSSDVSGSNMSENSIVVWDVSREVPL-----SKQVYVEAYTCPCVR 331 (442)
Q Consensus 264 -~~~~~---~~~~~~~~i~~~~~~---~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~ 331 (442)
|..+. .+. ....|..+..- .++.+++..+. +|.++...+...... ..+.......+..+.
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~-------~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~ 152 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATA-------NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVD 152 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEET-------TSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEE
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeC-------CCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEE
Confidence 22211 122 23456655442 34566777776 899999876532111 111112223444444
Q ss_pred ecCCCCeeEEEeCCCeEEEeeCCCCccccc----ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 332 HHPFDPYFVAQSNGNYIAIFSSTPPFRLDK----FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 332 ~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
.......++..+.+|.+..+....-..... ..... -.....+..+....++..|++.+..|.++-.++.
T Consensus 153 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 153 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 444556777788888877776543221110 01111 1123456666555556778888999998888764
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=78.27 E-value=32 Score=29.58 Aligned_cols=189 Identities=8% Similarity=0.033 Sum_probs=108.0
Q ss_pred CCEEEEecCCCcEEEEEcccCCc-------ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEEEEECCC---C-----
Q 013475 158 AHLLASAGMDQSICIWNVWSRDQ-------KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEK---G----- 222 (442)
Q Consensus 158 ~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~---~----- 222 (442)
..++++.+.+|.|+--.+..-.. .....++.. ..+..+........++..+..|.++-..... .
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 56788899999999887643211 111122322 3444444444555677778888877766532 1
Q ss_pred -cE---EEeeeCCcceEEEEEccC--CCCEEEEeeCCCcEEEEECCCC-------ceEEEeccCCCCEeEEEEeeCCCEE
Q 013475 223 -IE---TQSFREELAVRVVKFHPE--NSNLFLSGGSKGLLRLWDIRTG-------KVAHEYIQSLGPILDVEFTINGKQF 289 (442)
Q Consensus 223 -~~---~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l 289 (442)
.. ...+.....|..+....+ ....++..+.+|.++...+... .....+.. .+.+..+....++..+
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 11 112334455555544321 2366778899999998887432 22222333 4566666665555666
Q ss_pred EeccCCCCCcCCCCeEEEEeCCCCcc-------cceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCC
Q 013475 290 VSSSDVSGSNMSENSIVVWDVSREVP-------LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTP 355 (442)
Q Consensus 290 ~~~~~~~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 355 (442)
+..+. +|.+..+....-.. +..+.......+..+....++..+++.+..|....+.+..
T Consensus 166 ~l~T~-------~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSK-------KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEET-------TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeC-------CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 66666 89999888754111 1112222333455555545566788888888888887653
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=74.24 E-value=12 Score=35.61 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=41.3
Q ss_pred cEEEEEccCCCEEEEecCC------------CcEEEEecCCceeeEeeecc-CCceeEEEEcCCCCCEEEE
Q 013475 374 PIKCSFSLDGEKLVSGSSD------------GSIYFYNCRSSELERKIKAY-EQACIDVAFHPILPNIIGS 431 (442)
Q Consensus 374 v~~~~~s~~g~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s 431 (442)
+=.|+|++.|+++++-..+ +.+.+.+..+++....+.+. ...++.++|+||+..+++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3468999999988775532 34666677778776666655 5689999999998444443
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.13 E-value=16 Score=38.14 Aligned_cols=38 Identities=5% Similarity=0.109 Sum_probs=32.2
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeee
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR 229 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 229 (442)
.+.+++...+..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556666788899999999999999999999988765
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=71.53 E-value=55 Score=29.08 Aligned_cols=265 Identities=11% Similarity=0.079 Sum_probs=121.2
Q ss_pred EEEEecCCCcEEEEEcccCCc------ceeee---ec-cCCCceeEEEeCCCCCEEEEEecCCcEEEEECCCC-------
Q 013475 160 LLASAGMDQSICIWNVWSRDQ------KLARV---LN-FHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG------- 222 (442)
Q Consensus 160 ~l~s~~~dg~i~iwd~~~~~~------~~~~~---~~-~h~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~------- 222 (442)
.++.-..||+|..|-...... ..... +. .....|..|+- .....+.-..||.|+.|-....
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 444555678888886532211 00110 00 01123444443 3345555677999999964321
Q ss_pred -c---EEEeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-----------eEEEecc-CCCCEeEEEEee
Q 013475 223 -I---ETQSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK-----------VAHEYIQ-SLGPILDVEFTI 284 (442)
Q Consensus 223 -~---~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~-~~~~i~~~~~~~ 284 (442)
. ....+. ....+..++++.- ....+.-..||.|+.|-....- ....+.. ....|..++..
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G-~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G- 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSG-GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG- 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTT-CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-
T ss_pred cCCccCCEEcccccCCceeEEEECcC-CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-
Confidence 1 111122 2334455566553 4666667889999999654210 1111221 12256665543
Q ss_pred CCCEEEeccCCCCCcCCCCeEEEEeCCCCccc-----------ceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeC
Q 013475 285 NGKQFVSSSDVSGSNMSENSIVVWDVSREVPL-----------SKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSS 353 (442)
Q Consensus 285 ~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~ 353 (442)
....+.... +|.|..|-......+ ..........+..++......+.++...++.|+.|-.
T Consensus 168 -~~hs~alt~-------~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~ 239 (389)
T 3kci_A 168 -GAHSACVTA-------AGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239 (389)
T ss_dssp -SSEEEEEET-------TSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEEC
T ss_pred -cCeEEEEeC-------CCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeC
Confidence 333344444 899999975432111 0111112234455554443456677788999999976
Q ss_pred CCCccccc-------ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc-----------eeeEeeecc-CC
Q 013475 354 TPPFRLDK-------FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS-----------ELERKIKAY-EQ 414 (442)
Q Consensus 354 ~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-----------~~~~~~~~~-~~ 414 (442)
.....+-. ............+..++.. ..+.++-..+|.|+.|=.... .....+... ..
T Consensus 240 n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 240 GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317 (389)
T ss_dssp CGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred CCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence 54322100 0000000011123444332 334444567888999864321 011112211 23
Q ss_pred ceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 415 ACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 415 ~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
.|..|+.... ..+....||.|+.|
T Consensus 318 ~v~~ia~G~~---h~~al~~~G~v~~w 341 (389)
T 3kci_A 318 KVIAIATGSL---HCVCCTEDGEVYTW 341 (389)
T ss_dssp CEEEEEECSS---EEEEEETTCCEEEE
T ss_pred CEEEEEeccC---eEEEECCCCCEEEe
Confidence 4666665543 23334567888877
No 378
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.32 E-value=82 Score=30.97 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=57.9
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeec--c----CCCceeEEEeCC-CCCEEEEEecC-------
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLN--F----HSAAVNDVKWSQ-QGLFVLSCGYD------- 211 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~----h~~~v~~l~~~~-~~~~l~s~~~d------- 211 (442)
+.|..|+++|.+...++.+...+.|..++ +....-..... + ....|.+|++.| +...++.+...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 38999999998556676777666655544 23222122111 1 124689999998 33444444321
Q ss_pred CcEEEEECC-CCcEEEeeeC----------CcceEEEEEccCCCCEEEEeeCC
Q 013475 212 CSSRLVDVE-KGIETQSFRE----------ELAVRVVKFHPENSNLFLSGGSK 253 (442)
Q Consensus 212 ~~v~vwd~~-~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~d 253 (442)
+...||... .|+.-..+.. ...+..|+++|.+...++.+...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 124555443 3433222221 01246799998766777776643
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.28 E-value=11 Score=39.36 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=31.9
Q ss_pred CcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeee
Q 013475 373 FPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIK 410 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 410 (442)
.+.+++...+..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34566777888999999999999999999999887653
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.27 E-value=44 Score=31.56 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=41.2
Q ss_pred CcEEEEEccCCCEEEEecC------------CCcEEEEecCCceeeEeeecc-CCceeEEEEcCCCCCEEEEe
Q 013475 373 FPIKCSFSLDGEKLVSGSS------------DGSIYFYNCRSSELERKIKAY-EQACIDVAFHPILPNIIGSC 432 (442)
Q Consensus 373 ~v~~~~~s~~g~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~ 432 (442)
.+-.+.|+++|.+.++... .+.|+.++..++++...+.+. ...++.++|+||+..+++..
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567999999988874332 225777777778766655543 45789999999995444443
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.26 E-value=35 Score=32.43 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=39.1
Q ss_pred eeEEEeCCCCCEEEEEecC------------CcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEE
Q 013475 193 VNDVKWSQQGLFVLSCGYD------------CSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLS 249 (442)
Q Consensus 193 v~~l~~~~~~~~l~s~~~d------------~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~ 249 (442)
.-.|+|++.|.+++.-..+ +.+.+.+..+++..+.+. ...+++.++|+||+..+|+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999866654321 235566777777666555 57789999999997555444
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.81 E-value=17 Score=35.23 Aligned_cols=37 Identities=8% Similarity=0.190 Sum_probs=30.2
Q ss_pred ceeEEEeCCCCCEEEEEecCCcEEEEECCCCcEEEeeeC
Q 013475 192 AVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE 230 (442)
Q Consensus 192 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 230 (442)
.|.++.+ +..++++-+.|.++|+|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 467999999999999999999998877763
No 383
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=53.51 E-value=1.7e+02 Score=28.66 Aligned_cols=60 Identities=7% Similarity=-0.023 Sum_probs=36.8
Q ss_pred CceeEEEeCCC-CCEEEEEecCCcEEEEECCCCcEEEeee-C-------CcceEEEEEccCCCCEEEEee
Q 013475 191 AAVNDVKWSQQ-GLFVLSCGYDCSSRLVDVEKGIETQSFR-E-------ELAVRVVKFHPENSNLFLSGG 251 (442)
Q Consensus 191 ~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~~l~~~~ 251 (442)
+.|..|+++|. ...++++...+.|..++ +.++.-..+. . ...+.+++++|.+.+.++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 38999999985 35566666566666554 2333333332 1 245899999986545555443
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.36 E-value=74 Score=30.06 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=41.0
Q ss_pred CceeEEEeCCCCCEEEEEec------------CCcEEEEECCCCcEEEeee--CCcceEEEEEccCCCCEEEEe
Q 013475 191 AAVNDVKWSQQGLFVLSCGY------------DCSSRLVDVEKGIETQSFR--EELAVRVVKFHPENSNLFLSG 250 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~------------d~~v~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~ 250 (442)
.....|.|.++|.+.+.... .+.|..++..+++....+. ....++.++|+||+..+++..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34568999999987763321 1256777777787666555 346799999999985555544
No 385
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.98 E-value=23 Score=34.42 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=26.1
Q ss_pred CCCEEEEecCCCcEEEEecCCceeeEeeec
Q 013475 382 DGEKLVSGSSDGSIYFYNCRSSELERKIKA 411 (442)
Q Consensus 382 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 411 (442)
+..++++-+.|.++++||+.+++++.+..-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 578999999999999999999998776643
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=44.28 E-value=1.3e+02 Score=24.75 Aligned_cols=149 Identities=9% Similarity=0.014 Sum_probs=75.3
Q ss_pred CEEEEeeCCCcEEEEECCCCce-EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC-------Cccc
Q 013475 245 NLFLSGGSKGLLRLWDIRTGKV-AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR-------EVPL 316 (442)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~-------~~~~ 316 (442)
..+++.+.+|.|+--....... ...++.. ..+..+........++..+. .|.++-+.... +..+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~-------~Gr~~~~~~~elp~~r~~G~~i 74 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDS-------TGRSYAIDPITLPSARGQGEPL 74 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEET-------TSEEEEECGGGSCCSSSCCEEG
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeC-------CCeEEEEEHHHCCCcCCCCeEe
Confidence 3456667777776655432110 1112222 34444433333444444444 67766554322 1111
Q ss_pred c-eeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc--ceeEeecccccCcEEEEEc-cCCCEEEEecCC
Q 013475 317 S-KQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK--FKRYESHGVSGFPIKCSFS-LDGEKLVSGSSD 392 (442)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~d 392 (442)
. .+.......+..+....++.+++..+..|.++...+..-..... ...... .....+..+... .++..|+..+.+
T Consensus 75 ~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~ 153 (256)
T 1zvt_A 75 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQA 153 (256)
T ss_dssp GGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETT
T ss_pred eeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCC
Confidence 1 11122333455554434567788899999999887644211100 011111 112345555554 345678888899
Q ss_pred CcEEEEecCC
Q 013475 393 GSIYFYNCRS 402 (442)
Q Consensus 393 g~i~iwd~~~ 402 (442)
|.+..++...
T Consensus 154 G~~lrf~~~e 163 (256)
T 1zvt_A 154 GRMLMFPVSD 163 (256)
T ss_dssp SEEEEEEGGG
T ss_pred CeEEEEEHHH
Confidence 9988888753
No 387
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=42.79 E-value=1.6e+02 Score=25.29 Aligned_cols=156 Identities=7% Similarity=-0.005 Sum_probs=85.0
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEccc---C----Cccee---eeeccCCCceeEE-EeCC--CCCEEEEEecCCc
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWS---R----DQKLA---RVLNFHSAAVNDV-KWSQ--QGLFVLSCGYDCS 213 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~---~----~~~~~---~~~~~h~~~v~~l-~~~~--~~~~l~s~~~d~~ 213 (442)
.+..+..... ...|+..+..|.+.-+.... . .+..+ ..+. ....|..+ .... ++.+|+.++.+|.
T Consensus 40 ~l~~~~~~~t-~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 40 RLLAMLEMNT-KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CEEEEEEEET-TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred EEEEEEEECC-CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 3444444444 44566666778766665421 1 11111 1122 23445554 3332 2567899999999
Q ss_pred EEEEECCC--------CcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-------ceEEEecc-CCCCE
Q 013475 214 SRLVDVEK--------GIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-------KVAHEYIQ-SLGPI 277 (442)
Q Consensus 214 v~vwd~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~-~~~~i 277 (442)
++...+.. +.....+.....+..+..... ...++..+.+|.+..+....- +-+.-+.. ....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~-~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDG-MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECS-CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCC-CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99988742 222223334455655555443 356777888898888876421 11222221 23456
Q ss_pred eEEEEeeCCC-EEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 278 LDVEFTINGK-QFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 278 ~~~~~~~~~~-~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
.++....++. .+++.+. .|..+..++..
T Consensus 197 v~~~~~~~~~~~ll~vt~-------~G~gKr~~~~e 225 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQ-------RGAVKKMKLTE 225 (323)
T ss_dssp EEEEEECCTTCEEEEEET-------TSEEEEEEGGG
T ss_pred EEEEEEcCCCcEEEEEEC-------CCceEEEEHHH
Confidence 6665544444 5666665 78888777654
No 388
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=41.08 E-value=2e+02 Score=25.72 Aligned_cols=108 Identities=6% Similarity=-0.006 Sum_probs=59.2
Q ss_pred CceeEEEeCCCCCEEEEEecCCcEEEEECCCC-c------------EEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEE
Q 013475 191 AAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKG-I------------ETQSFREELAVRVVKFHPENSNLFLSGGSKGLLR 257 (442)
Q Consensus 191 ~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 257 (442)
..|..|+.. +.+.+.-..||.|+.|-.... + ....+.....|..++.. ....+.-..||.|+
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G---~~hs~al~~~G~v~ 149 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG---DSHSACLLEDGRVF 149 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC---SSEEEEEETTSCEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC---cCeEEEEeCCCeEE
Confidence 346666553 445666678999999965431 1 11112233456666653 34555667899999
Q ss_pred EEEC--CC-Cce---------EEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 258 LWDI--RT-GKV---------AHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 258 iwd~--~~-~~~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
.|-. .. ++. ..........|..|+.. ..+.+.... +|.|..|-...
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~-------~G~v~~wG~n~ 207 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTT-------AGKVFTVGCAE 207 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEET-------TSCEEEEECCT
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEec-------CCeEEEeeCCc
Confidence 9985 22 221 11111223456666643 333333344 89999996543
No 389
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=32.83 E-value=2.7e+02 Score=24.83 Aligned_cols=234 Identities=9% Similarity=-0.033 Sum_probs=113.4
Q ss_pred ceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc-----------ceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 147 AVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ-----------KLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 147 ~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
.|..|+.. +...+.-..||.|..|-...... ..-..+. ....|..|+... .+.+.-..||.|+
T Consensus 76 ~v~~va~G---~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~--~hs~al~~~G~v~ 149 (423)
T 3mvd_K 76 DAVDISAG---GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGD--SHSACLLEDGRVF 149 (423)
T ss_dssp SEEEEEEC---SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECS--SEEEEEETTSCEE
T ss_pred CceEEeeC---CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCc--CeEEEEeCCCeEE
Confidence 36566554 33455556788888886532110 0011111 224566666543 3455557799999
Q ss_pred EEEC--CC-CcE--------EE--eeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCc-----------------
Q 013475 216 LVDV--EK-GIE--------TQ--SFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGK----------------- 265 (442)
Q Consensus 216 vwd~--~~-~~~--------~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------- 265 (442)
.|-. .. ++. .. .+.....|..++.- ....+.-..+|.|+.|-....-
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 226 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG---ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRG 226 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTT
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC---CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccc
Confidence 9985 22 221 11 11134456666653 3455666788999999653211
Q ss_pred ------eEEEeccCCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccce-------e---eccccceeee
Q 013475 266 ------VAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSK-------Q---VYVEAYTCPC 329 (442)
Q Consensus 266 ------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-------~---~~~~~~~~~~ 329 (442)
+..........|..++.. ....++.... ++.|..|-......+-. . .......+..
T Consensus 227 ~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~-------~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ 298 (423)
T 3mvd_K 227 KRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQ-------TQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRH 298 (423)
T ss_dssp TTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETT-------TCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEE
T ss_pred cccccCCeEEeecCCccEEEEEEC-CcEEEEEECC-------CCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEE
Confidence 111111122345555544 2233333244 89999997654222111 0 0000112322
Q ss_pred EEecCCCCeeEEEeCCCeEEEeeCCCCcccc------cceeEee-cccccCcEEEEEccCCCEEEEecCCCcEEEEecC
Q 013475 330 VRHHPFDPYFVAQSNGNYIAIFSSTPPFRLD------KFKRYES-HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCR 401 (442)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~------~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~ 401 (442)
+ .....+.++-..++.|+.|-......+- ....... ......|..++... .+.++-..||.|+.|=..
T Consensus 299 i--a~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 299 I--AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp E--EECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred E--EcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCC
Confidence 2 2234455666778899998754322110 0000000 11111344554432 344444678899999644
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=30.38 E-value=2.3e+02 Score=23.33 Aligned_cols=137 Identities=6% Similarity=-0.066 Sum_probs=66.9
Q ss_pred CCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccccc----ceeEeecccccCcEEE
Q 013475 302 ENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDK----FKRYESHGVSGFPIKC 377 (442)
Q Consensus 302 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~~~~~~v~~~ 377 (442)
+|.|+--...... ...........+..+........++..+..|.++-+....-..... +...........|..+
T Consensus 11 ~G~iKr~~~~~~~-~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~ 89 (256)
T 1zvt_A 11 MGWVRSAKGHDID-APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHM 89 (256)
T ss_dssp TSEEEEEESSCCC-STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEE
T ss_pred CCEEEEeeCCcCC-ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEE
Confidence 6666655543321 1111122222333343334455666677777766655432100000 0000001122446665
Q ss_pred EEccCCCEEEEecCCCcEEEEecCC-------ceeeEeeeccCCceeEEEEc-CCCCCEEEEeeCCCcEEEc
Q 013475 378 SFSLDGEKLVSGSSDGSIYFYNCRS-------SELERKIKAYEQACIDVAFH-PILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 378 ~~s~~g~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iw 441 (442)
....++.+|+..+.+|.++...+.. +.....++. .+.+..+... ..+ ..|+..+.+|.+..+
T Consensus 90 ~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~-~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 90 LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDAS-DMLLAITQAGRMLMF 159 (256)
T ss_dssp ECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTT-CEEEEEETTSEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCC-CEEEEEcCCCeEEEE
Confidence 4434567788899999999987743 233333432 2445554444 233 466667777776543
No 391
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=29.36 E-value=3e+02 Score=24.37 Aligned_cols=272 Identities=10% Similarity=0.044 Sum_probs=125.4
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCc----------ceeeeeccCCCceeEEEeCCCCCEEEEEecC-CcE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQ----------KLARVLNFHSAAVNDVKWSQQGLFVLSCGYD-CSS 214 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-~~v 214 (442)
..|..|+.... ..+.-..||.|..|-...... .+..........|..++...+ +.+....+ +.|
T Consensus 16 ~~v~~ia~G~~---hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v 90 (406)
T 4d9s_A 16 RKVLIISAGAS---HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEV 90 (406)
T ss_dssp CCEEEEEECSS---EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEE
T ss_pred cceEEEecCCC---eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEE
Confidence 34566655432 334445578888886432110 111111112235667765433 33333445 489
Q ss_pred EEEECCCC---------cEE--Eeee--CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCC-c---------e-EEEe
Q 013475 215 RLVDVEKG---------IET--QSFR--EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTG-K---------V-AHEY 270 (442)
Q Consensus 215 ~vwd~~~~---------~~~--~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~---------~-~~~~ 270 (442)
+.|-.... ... ..+. ....|..++.- ....+.-..+|.|+.|-.... + . ...+
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 167 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 167 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEEC
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEe
Confidence 99964321 111 1111 23356777663 355566678999999975431 1 1 1112
Q ss_pred cc-CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCCcccc-----------eeeccccceeeeEEecCCCCe
Q 013475 271 IQ-SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLS-----------KQVYVEAYTCPCVRHHPFDPY 338 (442)
Q Consensus 271 ~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 338 (442)
.. ....|..++.. ..+.+.... +|.|..|-......+- .........+..++ -...+
T Consensus 168 ~~~~~~~i~~va~G--~~hs~alt~-------~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va--~G~~h 236 (406)
T 4d9s_A 168 QAFEGIRIKMVAAG--AEHTAAVTE-------DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA--CGWRH 236 (406)
T ss_dssp GGGTTCCEEEEEEC--SSEEEEEET-------TSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE--ECSSE
T ss_pred cccCCCcEEEEecC--CCeEEEEeC-------CCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE--ECCCc
Confidence 11 12256655543 333344444 8999999754422110 00001111222222 22344
Q ss_pred eEEEeCCCeEEEeeCCCCccccc-------ceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEEecCCc-e------
Q 013475 339 FVAQSNGNYIAIFSSTPPFRLDK-------FKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSS-E------ 404 (442)
Q Consensus 339 l~~~~~~~~i~i~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~-~------ 404 (442)
.++-..++.|+.|-......+-. ............|..++. ...+.++-..||.|+.|=.... +
T Consensus 237 t~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 314 (406)
T 4d9s_A 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNN 314 (406)
T ss_dssp EEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred EEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCC
Confidence 55566788888887554322210 000000011112333332 3344555567888888854321 1
Q ss_pred ----eeEeee-ccCCceeEEEEcCCCCCEEEEeeCCCcEEEc
Q 013475 405 ----LERKIK-AYEQACIDVAFHPILPNIIGSCSWNGDVSVY 441 (442)
Q Consensus 405 ----~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 441 (442)
....+. .....|..|+.-.. ..+....||.|+.|
T Consensus 315 ~~~~~p~~v~~~~~~~v~~va~G~~---hs~alt~~G~v~~w 353 (406)
T 4d9s_A 315 LDQCSPVQVRFPDDQKVVQVSCGWR---HTLAVTERNNVFAW 353 (406)
T ss_dssp SCEEEEEEECCGGGCCEEEEEECSS---EEEEEETTSCEEEE
T ss_pred CCCccCEEEeccCCCcEEEEEeCCC---eEEEEeCCCCEEEe
Confidence 011111 11235666665543 23333467888777
No 392
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=26.57 E-value=4.1e+02 Score=25.68 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=41.0
Q ss_pred cceEEEEee----CCCC--CEEEEecCCCcEE-EEEcccCCc-----ceeee--eccCCCceeEEEeCCCCCEEEEEecC
Q 013475 146 KAVNSINWS----PTHA--HLLASAGMDQSIC-IWNVWSRDQ-----KLARV--LNFHSAAVNDVKWSQQGLFVLSCGYD 211 (442)
Q Consensus 146 ~~V~~~~~s----~~~~--~~l~s~~~dg~i~-iwd~~~~~~-----~~~~~--~~~h~~~v~~l~~~~~~~~l~s~~~d 211 (442)
...+.|+.+ .+ + ..++.|..+|.|. +........ ..+.. +.....+|..|.++++..+|++++.+
T Consensus 412 ~~lT~IaVd~v~~~~-g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~ 490 (667)
T 4gz8_A 412 YQFTQIVVDRVDAED-GQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTA 490 (667)
T ss_dssp CCEEEEEEEEEECSS-CEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSS
T ss_pred cceeEEEEEEEecCC-CcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECC
Confidence 345566653 23 3 3677888899774 332211111 11211 12356789999999999999999877
Q ss_pred CcEEE
Q 013475 212 CSSRL 216 (442)
Q Consensus 212 ~~v~v 216 (442)
+.++|
T Consensus 491 ~V~kV 495 (667)
T 4gz8_A 491 GVAQL 495 (667)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 64443
No 393
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.72 E-value=2e+02 Score=26.60 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=33.7
Q ss_pred eeEEEeCCCeEEEeeCCCCc-----ccccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEE
Q 013475 338 YFVAQSNGNYIAIFSSTPPF-----RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYF 397 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i 397 (442)
.+..|+.+|.|.-.-+.... ....+..+........|..+.+++++.+|++++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 34557777766444332211 1111222222222356789999999999999998875554
No 394
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.54 E-value=3.2e+02 Score=25.21 Aligned_cols=70 Identities=6% Similarity=-0.021 Sum_probs=42.1
Q ss_pred ceEEEEeeCC----C-CCEEEEecCCCcEEEEEcccCC------cceeeeec--cCCCceeEEEeCCCCCEEEEEecCCc
Q 013475 147 AVNSINWSPT----H-AHLLASAGMDQSICIWNVWSRD------QKLARVLN--FHSAAVNDVKWSQQGLFVLSCGYDCS 213 (442)
Q Consensus 147 ~V~~~~~s~~----~-~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~ 213 (442)
..++|+...- + -..++.|..+|.|.=.-+.... ...+..+. ....+|..|.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4667666431 1 2357778889977544332111 11222222 24578999999999999999987765
Q ss_pred EEE
Q 013475 214 SRL 216 (442)
Q Consensus 214 v~v 216 (442)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 395
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=25.00 E-value=2.2e+02 Score=26.60 Aligned_cols=59 Identities=7% Similarity=-0.103 Sum_probs=35.6
Q ss_pred eeEEEeCCCeEEEeeCCCCcccccceeEeecccccCc-EEEEEccCCCEEEEecCCCcEEE
Q 013475 338 YFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFP-IKCSFSLDGEKLVSGSSDGSIYF 397 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~g~~dg~i~i 397 (442)
.+..|+.+|.|.-.-.........+..+.. .....| ..+.++++..+|++++.++.++|
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 345588888776444432211122233332 223456 47899999999999998887666
No 396
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=24.98 E-value=3.6e+02 Score=25.41 Aligned_cols=71 Identities=6% Similarity=-0.002 Sum_probs=42.3
Q ss_pred cceEEEEeeCC-----CCCEEEEecCCCcEE-EEEcccC-----Ccceeee---ecc--------CCCceeEEEeCCCCC
Q 013475 146 KAVNSINWSPT-----HAHLLASAGMDQSIC-IWNVWSR-----DQKLARV---LNF--------HSAAVNDVKWSQQGL 203 (442)
Q Consensus 146 ~~V~~~~~s~~-----~~~~l~s~~~dg~i~-iwd~~~~-----~~~~~~~---~~~--------h~~~v~~l~~~~~~~ 203 (442)
-..+.|+.... +-..++.|+.+|.|. +...... ....+.. +.. ...+|..|.++++..
T Consensus 403 y~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~ 482 (565)
T 3oky_B 403 YRLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASG 482 (565)
T ss_dssp SCEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGT
T ss_pred cceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCC
Confidence 35677777642 124677888999875 3332111 1112222 210 146788999999888
Q ss_pred EEEEEecCCcEEE
Q 013475 204 FVLSCGYDCSSRL 216 (442)
Q Consensus 204 ~l~s~~~d~~v~v 216 (442)
.|+.++.++.++|
T Consensus 483 ~LYV~s~~~V~qV 495 (565)
T 3oky_B 483 SLYVAFSTCVIKV 495 (565)
T ss_dssp EEEEECSSCEEEE
T ss_pred EEEEEecCeEEEe
Confidence 9999887765554
No 397
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.79 E-value=1.3e+02 Score=28.29 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=34.6
Q ss_pred eeEEEeCCCeEEEeeCCCCccc-ccceeEeecccccCcE-EEEEccCCCEEEEecCCCcEEE
Q 013475 338 YFVAQSNGNYIAIFSSTPPFRL-DKFKRYESHGVSGFPI-KCSFSLDGEKLVSGSSDGSIYF 397 (442)
Q Consensus 338 ~l~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~~dg~i~i 397 (442)
.+..|+.+|.|.-..+...... ..+..+........|. .+.+++++.+|++++.++.++|
T Consensus 415 V~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 415 VVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4556888887665544322111 1122222222234564 7899999999999998765554
No 398
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.60 E-value=2.1e+02 Score=19.85 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=15.3
Q ss_pred eEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCC
Q 013475 278 LDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSR 312 (442)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~ 312 (442)
..+.+..+|++++... ++.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~--------~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD--------RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT--------TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC--------CCCE-EEECCC
Confidence 3466677777766644 3443 676554
No 399
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.47 E-value=3e+02 Score=26.10 Aligned_cols=58 Identities=10% Similarity=-0.072 Sum_probs=36.5
Q ss_pred CEEEEecCCCcEEEEEcccCC----cceeeeec--cCCCceeEEEeCCCCCEEEEEecCCcEEE
Q 013475 159 HLLASAGMDQSICIWNVWSRD----QKLARVLN--FHSAAVNDVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 159 ~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~d~~v~v 216 (442)
..+..|+.+|.|.-.-+.... ...+..+. ....+|..|.++++...|+.++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467788889987644332211 11122222 24578999999999889998886665444
No 400
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=20.27 E-value=4.5e+02 Score=23.21 Aligned_cols=236 Identities=10% Similarity=-0.039 Sum_probs=0.0
Q ss_pred cceEEEEeeCCCCCEEEEecCCCcEEEEEccc----------CCcceeeeeccCCCceeEEEeCCCCCEEEEEecCCcEE
Q 013475 146 KAVNSINWSPTHAHLLASAGMDQSICIWNVWS----------RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSR 215 (442)
Q Consensus 146 ~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d~~v~ 215 (442)
..|..++.. ....+.-..||.|..|-... ......-..-.-...|..|+. ...+.+.-..||.|+
T Consensus 59 ~~i~~va~G---~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~--G~~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAG---GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCeEEEEeC---CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEec--CCCeEEEEcCCCcEE
Q ss_pred EEEC--------------CCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEecc---------
Q 013475 216 LVDV--------------EKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQ--------- 272 (442)
Q Consensus 216 vwd~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------- 272 (442)
.|-. ........+.....|..++. |....+.-..||.|+.|-....-.+-.-..
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS---GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe---cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Q ss_pred -------------------CCCCEeEEEEeeCCCEEEeccCCCCCcCCCCeEEEEeCCCC-----------cccceeecc
Q 013475 273 -------------------SLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSRE-----------VPLSKQVYV 322 (442)
Q Consensus 273 -------------------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~d~~i~iwd~~~~-----------~~~~~~~~~ 322 (442)
....|..++...+...+++. +|.|..|-.... .....+...
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~---------~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l 281 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH---------EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSF 281 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET---------TCCEEEEECCTTSTTSCSSCSCEEEEEECGGG
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCCEEEEEeC---------CCCEEEEeCCCCcCCCCCCCCcccccEEchhc
Q ss_pred ccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCccc----ccceeEeecccccCcEEEEEccCCCEEEEecCCCcEEEE
Q 013475 323 EAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRL----DKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFY 398 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iw 398 (442)
.......+.+.-...+.++-..++.|+.|-......+ ..............-.-..++-...+.++-..||.|+.|
T Consensus 282 ~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 282 KNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAW 361 (413)
T ss_dssp CCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEE
T ss_pred cCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEe
No 401
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.21 E-value=2.8e+02 Score=25.97 Aligned_cols=71 Identities=7% Similarity=0.007 Sum_probs=43.7
Q ss_pred cceEEEEeeCCC-CCEEEEecCCCcEEEEEcccCCc--ceeeee--ccCCCcee-EEEeCCCCCEEEEEecCCcEEE
Q 013475 146 KAVNSINWSPTH-AHLLASAGMDQSICIWNVWSRDQ--KLARVL--NFHSAAVN-DVKWSQQGLFVLSCGYDCSSRL 216 (442)
Q Consensus 146 ~~V~~~~~s~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~--~~h~~~v~-~l~~~~~~~~l~s~~~d~~v~v 216 (442)
...++|+....+ -..++.|..+|.|.=..+..... .....+ .....+|. .|.++++..+|++++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 357777766542 34677788999876655543211 122222 22356785 8999999999999886654433
No 402
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=20.06 E-value=3.3e+02 Score=21.64 Aligned_cols=7 Identities=14% Similarity=0.098 Sum_probs=2.8
Q ss_pred cccccCC
Q 013475 4 LCNAYSN 10 (442)
Q Consensus 4 ~~~~~~~ 10 (442)
+.|....
T Consensus 117 ~~~~~~~ 123 (216)
T 2krg_A 117 FTNGEIQ 123 (216)
T ss_dssp CCCCSSC
T ss_pred ccCCccc
Confidence 3344443
Done!