Query 013476
Match_columns 442
No_of_seqs 295 out of 3110
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0042 Glycerol-3-phosphate d 100.0 8E-59 1.7E-63 426.2 26.2 382 53-442 52-436 (680)
2 PLN02464 glycerol-3-phosphate 100.0 2.2E-50 4.8E-55 404.6 40.5 389 48-442 48-442 (627)
3 COG0578 GlpA Glycerol-3-phosph 100.0 9.3E-48 2E-52 365.4 35.8 358 69-442 10-374 (532)
4 PRK12266 glpD glycerol-3-phosp 100.0 9E-42 2E-46 336.6 37.3 354 70-442 5-366 (508)
5 PRK13369 glycerol-3-phosphate 100.0 1.6E-41 3.5E-46 335.4 36.2 354 69-442 4-365 (502)
6 PRK11101 glpA sn-glycerol-3-ph 100.0 2E-40 4.3E-45 329.6 37.7 346 69-442 4-358 (546)
7 TIGR03377 glycerol3P_GlpA glyc 100.0 2.6E-34 5.6E-39 285.6 33.7 330 87-442 1-335 (516)
8 PRK11728 hydroxyglutarate oxid 100.0 1.3E-31 2.8E-36 258.4 31.9 331 71-436 2-375 (393)
9 TIGR01373 soxB sarcosine oxida 100.0 1.1E-30 2.3E-35 253.6 35.2 327 69-436 28-364 (407)
10 PF01266 DAO: FAD dependent ox 100.0 1.9E-31 4.2E-36 254.9 28.3 328 73-438 1-343 (358)
11 COG0579 Predicted dehydrogenas 100.0 3.7E-30 7.9E-35 240.9 29.4 339 70-435 2-353 (429)
12 PRK00711 D-amino acid dehydrog 100.0 4.7E-30 1E-34 250.1 30.4 329 73-436 2-381 (416)
13 PRK12409 D-amino acid dehydrog 100.0 1.4E-29 3E-34 246.0 32.6 333 72-435 2-384 (410)
14 TIGR03364 HpnW_proposed FAD de 100.0 1.2E-28 2.6E-33 235.9 31.1 321 72-437 1-353 (365)
15 TIGR03329 Phn_aa_oxid putative 100.0 2.2E-28 4.7E-33 240.0 30.9 331 69-436 22-373 (460)
16 PRK11259 solA N-methyltryptoph 100.0 4.4E-28 9.5E-33 233.2 32.3 323 70-436 2-339 (376)
17 TIGR01377 soxA_mon sarcosine o 100.0 4E-27 8.7E-32 226.8 33.6 324 72-438 1-341 (380)
18 PRK01747 mnmC bifunctional tRN 100.0 2.2E-28 4.8E-33 249.9 25.9 309 71-424 260-576 (662)
19 COG0665 DadA Glycine/D-amino a 100.0 1.4E-26 3E-31 223.8 30.9 336 69-437 2-347 (387)
20 TIGR01320 mal_quin_oxido malat 99.9 2.2E-25 4.8E-30 217.7 28.1 352 72-430 1-419 (483)
21 TIGR02352 thiamin_ThiO glycine 99.9 1.2E-25 2.6E-30 213.1 24.6 308 88-436 1-315 (337)
22 PRK13339 malate:quinone oxidor 99.9 3.6E-24 7.9E-29 207.4 29.3 343 69-423 4-413 (497)
23 KOG2665 Predicted FAD-dependen 99.9 8.1E-26 1.8E-30 195.9 15.7 341 69-435 46-432 (453)
24 KOG2820 FAD-dependent oxidored 99.9 4.4E-24 9.5E-29 187.3 25.9 334 69-440 5-361 (399)
25 KOG2844 Dimethylglycine dehydr 99.9 4.2E-25 9.2E-30 209.0 20.8 324 70-434 38-378 (856)
26 PRK05257 malate:quinone oxidor 99.9 2.3E-23 4.9E-28 203.7 29.9 354 69-430 3-423 (494)
27 TIGR03197 MnmC_Cterm tRNA U-34 99.9 2.4E-24 5.2E-29 207.0 21.3 306 86-437 1-342 (381)
28 PTZ00383 malate:quinone oxidor 99.9 1.4E-23 3.1E-28 204.2 25.4 316 69-408 43-429 (497)
29 KOG2853 Possible oxidoreductas 99.9 3.3E-22 7.2E-27 175.4 25.0 337 70-438 85-463 (509)
30 PRK06481 fumarate reductase fl 99.8 2.4E-19 5.2E-24 177.5 22.9 193 70-298 60-253 (506)
31 KOG3923 D-aspartate oxidase [A 99.8 1.2E-18 2.5E-23 150.8 17.8 284 70-410 2-294 (342)
32 PF06039 Mqo: Malate:quinone o 99.8 2.9E-17 6.3E-22 152.4 27.4 248 70-323 2-273 (488)
33 KOG2852 Possible oxidoreductas 99.8 4.4E-18 9.6E-23 146.4 17.0 314 71-434 10-340 (380)
34 PRK07121 hypothetical protein; 99.8 4.4E-18 9.6E-23 168.7 19.2 205 69-297 18-240 (492)
35 PRK07573 sdhA succinate dehydr 99.7 4.6E-17 1E-21 164.7 18.5 216 48-297 15-233 (640)
36 TIGR01813 flavo_cyto_c flavocy 99.7 1.6E-16 3.4E-21 155.8 19.7 191 73-297 1-193 (439)
37 PF00890 FAD_binding_2: FAD bi 99.7 1.2E-16 2.6E-21 155.8 18.0 200 73-300 1-207 (417)
38 PRK06452 sdhA succinate dehydr 99.7 3.1E-16 6.7E-21 157.1 20.1 196 69-296 3-198 (566)
39 PRK09078 sdhA succinate dehydr 99.7 3.3E-16 7.2E-21 157.8 19.4 203 69-298 10-214 (598)
40 PTZ00139 Succinate dehydrogena 99.7 4.6E-16 1E-20 157.0 20.0 203 70-298 28-231 (617)
41 PRK12845 3-ketosteroid-delta-1 99.7 6.3E-16 1.4E-20 154.2 20.6 206 69-298 14-280 (564)
42 PRK08958 sdhA succinate dehydr 99.7 6.4E-16 1.4E-20 155.2 20.2 203 70-298 6-208 (588)
43 PLN00128 Succinate dehydrogena 99.7 5.8E-16 1.3E-20 156.2 19.6 204 69-298 48-252 (635)
44 PRK08274 tricarballylate dehyd 99.7 6.9E-16 1.5E-20 152.4 19.6 189 70-297 3-193 (466)
45 PRK12839 hypothetical protein; 99.7 1E-15 2.2E-20 153.1 20.1 69 229-299 211-279 (572)
46 PRK12835 3-ketosteroid-delta-1 99.7 6.8E-16 1.5E-20 154.9 18.6 67 233-302 214-283 (584)
47 PTZ00306 NADH-dependent fumara 99.7 7.2E-16 1.6E-20 165.9 18.5 207 56-298 397-622 (1167)
48 PLN02815 L-aspartate oxidase 99.7 1.3E-15 2.8E-20 152.3 19.0 194 68-297 26-223 (594)
49 PRK07057 sdhA succinate dehydr 99.7 2.3E-15 4.9E-20 151.5 20.9 203 68-297 9-212 (591)
50 PRK08641 sdhA succinate dehydr 99.7 2E-15 4.3E-20 151.9 20.1 196 70-297 2-201 (589)
51 PRK07804 L-aspartate oxidase; 99.7 2.7E-15 5.9E-20 149.7 20.4 195 69-297 14-211 (541)
52 PRK06263 sdhA succinate dehydr 99.7 3.9E-15 8.4E-20 149.1 20.3 194 68-297 4-198 (543)
53 PRK07803 sdhA succinate dehydr 99.7 2.6E-15 5.5E-20 152.0 19.0 196 69-298 6-215 (626)
54 PRK12837 3-ketosteroid-delta-1 99.7 3E-15 6.5E-20 148.7 18.8 210 70-303 6-244 (513)
55 PRK06134 putative FAD-binding 99.7 4.8E-15 1.1E-19 149.2 20.4 69 229-301 214-283 (581)
56 PRK08626 fumarate reductase fl 99.7 5E-15 1.1E-19 150.2 20.6 201 69-298 3-222 (657)
57 PRK08205 sdhA succinate dehydr 99.7 3.5E-15 7.6E-20 150.2 19.3 198 70-298 4-208 (583)
58 COG2081 Predicted flavoprotein 99.7 1.4E-15 3E-20 138.5 14.3 69 231-307 110-188 (408)
59 PRK12842 putative succinate de 99.7 7.9E-15 1.7E-19 147.7 21.1 64 232-299 214-278 (574)
60 PRK06185 hypothetical protein; 99.7 1.8E-14 3.9E-19 140.1 22.6 146 229-385 105-252 (407)
61 PRK05945 sdhA succinate dehydr 99.7 6.8E-15 1.5E-19 148.1 20.2 194 70-297 2-198 (575)
62 TIGR01812 sdhA_frdA_Gneg succi 99.7 8.4E-15 1.8E-19 147.8 20.8 191 73-297 1-192 (566)
63 PRK07395 L-aspartate oxidase; 99.7 4.3E-15 9.2E-20 148.1 18.0 190 69-297 7-198 (553)
64 COG0644 FixC Dehydrogenases (f 99.7 7.1E-14 1.5E-18 134.8 25.6 121 228-359 91-217 (396)
65 PRK09231 fumarate reductase fl 99.6 7.4E-15 1.6E-19 147.6 19.0 193 69-297 2-197 (582)
66 PRK12844 3-ketosteroid-delta-1 99.6 6.4E-15 1.4E-19 147.4 18.3 62 232-297 208-270 (557)
67 TIGR02032 GG-red-SF geranylger 99.6 3.5E-14 7.6E-19 131.9 21.8 162 228-406 87-253 (295)
68 PRK06069 sdhA succinate dehydr 99.6 9E-15 2E-19 147.4 18.9 195 68-297 2-201 (577)
69 PRK06175 L-aspartate oxidase; 99.6 7.7E-15 1.7E-19 142.5 17.7 187 70-297 3-190 (433)
70 TIGR01176 fum_red_Fp fumarate 99.6 1.2E-14 2.6E-19 145.7 19.1 192 70-297 2-196 (580)
71 PRK08071 L-aspartate oxidase; 99.6 1.4E-14 3.1E-19 143.5 19.3 190 70-297 2-191 (510)
72 PRK09077 L-aspartate oxidase; 99.6 2.2E-14 4.8E-19 143.1 20.5 196 69-297 6-208 (536)
73 PRK12834 putative FAD-binding 99.6 1E-14 2.2E-19 146.2 18.1 206 70-298 3-229 (549)
74 TIGR00551 nadB L-aspartate oxi 99.6 3.3E-14 7.2E-19 140.6 20.6 188 71-297 2-190 (488)
75 PRK04176 ribulose-1,5-biphosph 99.6 2.1E-14 4.6E-19 128.9 17.2 73 229-303 101-179 (257)
76 TIGR01811 sdhA_Bsu succinate d 99.6 2.4E-14 5.2E-19 144.2 19.3 192 74-297 1-197 (603)
77 PRK06854 adenylylsulfate reduc 99.6 2.5E-14 5.4E-19 144.4 18.9 185 69-297 9-196 (608)
78 PRK12843 putative FAD-binding 99.6 4.4E-14 9.4E-19 142.2 19.8 65 230-298 219-284 (578)
79 PRK07843 3-ketosteroid-delta-1 99.6 2.8E-14 6E-19 143.0 17.6 62 232-297 208-270 (557)
80 PRK08275 putative oxidoreducta 99.6 4.2E-14 9E-19 141.9 18.7 192 69-297 7-201 (554)
81 PF03486 HI0933_like: HI0933-l 99.6 3.3E-15 7.2E-20 142.3 9.4 71 230-307 107-187 (409)
82 PRK07512 L-aspartate oxidase; 99.6 5.5E-14 1.2E-18 139.5 17.6 190 69-297 7-198 (513)
83 TIGR02061 aprA adenosine phosp 99.6 1.8E-13 3.9E-18 137.0 19.8 186 73-297 1-192 (614)
84 PLN02697 lycopene epsilon cycl 99.6 1E-12 2.3E-17 129.1 24.6 163 228-407 188-366 (529)
85 PRK06184 hypothetical protein; 99.6 7.1E-13 1.5E-17 132.1 23.6 75 229-309 106-180 (502)
86 COG1053 SdhA Succinate dehydro 99.6 5.5E-14 1.2E-18 138.7 15.1 198 69-296 4-202 (562)
87 TIGR00292 thiazole biosynthesi 99.5 2.4E-13 5.1E-18 121.7 16.8 67 230-296 98-170 (254)
88 PRK08244 hypothetical protein; 99.5 1.9E-12 4.1E-17 128.8 24.9 73 229-307 97-169 (493)
89 TIGR02023 BchP-ChlP geranylger 99.5 1.2E-12 2.7E-17 126.1 21.2 190 228-438 88-284 (388)
90 PRK07494 2-octaprenyl-6-methox 99.5 2.9E-13 6.3E-18 130.8 16.2 70 229-307 108-177 (388)
91 PRK06126 hypothetical protein; 99.5 2.9E-12 6.3E-17 129.1 23.8 75 229-307 123-198 (545)
92 PRK08773 2-octaprenyl-3-methyl 99.5 8.8E-13 1.9E-17 127.5 18.5 118 229-357 110-228 (392)
93 PLN00093 geranylgeranyl diphos 99.5 2.1E-12 4.5E-17 125.8 21.0 76 228-306 128-208 (450)
94 COG1635 THI4 Ribulose 1,5-bisp 99.5 8.2E-13 1.8E-17 110.0 14.8 68 229-297 106-179 (262)
95 PRK06183 mhpA 3-(3-hydroxyphen 99.5 2.3E-12 4.9E-17 129.5 21.1 74 229-307 110-184 (538)
96 PRK13800 putative oxidoreducta 99.5 9.2E-13 2E-17 139.0 18.8 192 68-297 10-206 (897)
97 PRK06834 hypothetical protein; 99.5 7.5E-12 1.6E-16 123.5 23.0 71 230-309 98-168 (488)
98 PRK10157 putative oxidoreducta 99.5 6.4E-13 1.4E-17 129.2 15.1 69 229-306 105-173 (428)
99 TIGR02028 ChlP geranylgeranyl 99.5 6.2E-12 1.3E-16 121.3 21.6 76 228-306 89-169 (398)
100 PRK07333 2-octaprenyl-6-methox 99.5 1.6E-12 3.4E-17 126.4 17.5 116 228-354 107-223 (403)
101 COG0654 UbiH 2-polyprenyl-6-me 99.5 3.6E-12 7.9E-17 122.7 19.4 69 228-304 100-169 (387)
102 PRK08401 L-aspartate oxidase; 99.5 2E-12 4.4E-17 127.1 17.9 176 72-299 2-178 (466)
103 PRK07608 ubiquinone biosynthes 99.5 4.7E-12 1E-16 122.4 20.3 70 228-307 107-177 (388)
104 PF01946 Thi4: Thi4 family; PD 99.5 5.4E-13 1.2E-17 112.0 11.7 67 229-296 93-165 (230)
105 TIGR01790 carotene-cycl lycope 99.5 1.5E-11 3.3E-16 118.8 23.7 163 228-406 81-255 (388)
106 TIGR02485 CobZ_N-term precorri 99.5 1.9E-12 4.1E-17 126.5 17.2 61 232-297 123-184 (432)
107 PRK08013 oxidoreductase; Provi 99.5 3.2E-12 6.9E-17 123.8 18.2 70 229-307 108-178 (400)
108 KOG1298 Squalene monooxygenase 99.5 5.9E-12 1.3E-16 113.3 18.2 71 229-304 144-215 (509)
109 PF05834 Lycopene_cycl: Lycope 99.5 9.9E-12 2.2E-16 118.8 21.3 156 228-407 83-246 (374)
110 PRK08294 phenol 2-monooxygenas 99.5 2.6E-11 5.6E-16 123.1 24.8 78 229-308 138-221 (634)
111 PRK07364 2-octaprenyl-6-methox 99.4 5.4E-12 1.2E-16 123.1 19.0 70 232-307 121-191 (415)
112 PF01494 FAD_binding_3: FAD bi 99.4 1.5E-12 3.2E-17 124.3 14.6 74 229-306 108-181 (356)
113 PLN02463 lycopene beta cyclase 99.4 3.2E-11 6.9E-16 116.9 23.5 62 227-297 109-170 (447)
114 PRK05714 2-octaprenyl-3-methyl 99.4 6.9E-12 1.5E-16 121.8 18.8 70 229-307 109-178 (405)
115 PRK10015 oxidoreductase; Provi 99.4 1.9E-12 4.2E-17 125.8 14.7 69 229-306 105-173 (429)
116 PRK07045 putative monooxygenas 99.4 2.4E-11 5.2E-16 117.4 22.3 71 229-306 103-175 (388)
117 PRK07190 hypothetical protein; 99.4 1.6E-11 3.4E-16 121.1 20.5 68 232-308 109-176 (487)
118 PF00732 GMC_oxred_N: GMC oxid 99.4 2.3E-12 4.9E-17 119.8 13.6 68 236-305 196-268 (296)
119 PLN02985 squalene monooxygenas 99.4 3E-11 6.4E-16 119.6 21.7 74 228-306 143-217 (514)
120 PF12831 FAD_oxidored: FAD dep 99.4 1.3E-13 2.8E-18 134.0 4.3 73 229-307 87-159 (428)
121 PRK08020 ubiF 2-octaprenyl-3-m 99.4 1.7E-11 3.8E-16 118.5 19.0 85 229-322 109-194 (391)
122 PRK06847 hypothetical protein; 99.4 6.8E-11 1.5E-15 113.8 22.9 66 228-302 103-168 (375)
123 TIGR01984 UbiH 2-polyprenyl-6- 99.4 9.3E-12 2E-16 120.1 16.9 70 229-307 102-172 (382)
124 TIGR01988 Ubi-OHases Ubiquinon 99.4 7.8E-12 1.7E-16 120.8 16.0 70 229-307 103-173 (385)
125 PLN02661 Putative thiazole syn 99.4 1E-11 2.2E-16 114.1 15.6 63 232-296 172-244 (357)
126 PRK05192 tRNA uridine 5-carbox 99.4 5.6E-12 1.2E-16 124.0 14.8 63 227-297 95-158 (618)
127 PRK11445 putative oxidoreducta 99.4 2.2E-10 4.7E-15 108.9 24.7 121 228-357 95-215 (351)
128 TIGR01989 COQ6 Ubiquinone bios 99.4 2.4E-11 5.1E-16 119.0 17.7 118 229-354 114-240 (437)
129 PRK08850 2-octaprenyl-6-methox 99.4 2.8E-11 6E-16 117.5 17.9 67 232-307 111-178 (405)
130 PRK09126 hypothetical protein; 99.4 5.1E-11 1.1E-15 115.3 19.1 69 230-307 108-177 (392)
131 PRK08132 FAD-dependent oxidore 99.4 1.2E-10 2.7E-15 117.3 22.4 73 230-308 123-196 (547)
132 COG1233 Phytoene dehydrogenase 99.3 4.1E-11 8.8E-16 118.3 17.9 56 232-294 224-279 (487)
133 PRK08849 2-octaprenyl-3-methyl 99.3 9E-11 2E-15 113.1 19.8 67 232-307 110-177 (384)
134 PRK05732 2-octaprenyl-6-methox 99.3 5.1E-11 1.1E-15 115.5 18.0 68 231-307 111-179 (395)
135 PRK06617 2-octaprenyl-6-methox 99.3 1E-10 2.2E-15 112.3 19.8 69 229-307 101-170 (374)
136 TIGR02730 carot_isom carotene 99.3 3E-11 6.4E-16 120.2 16.5 58 232-296 229-286 (493)
137 COG0029 NadB Aspartate oxidase 99.3 3.4E-11 7.3E-16 112.8 15.1 187 73-297 9-197 (518)
138 KOG2404 Fumarate reductase, fl 99.3 6.2E-12 1.3E-16 110.5 9.5 197 73-305 11-218 (477)
139 PRK08243 4-hydroxybenzoate 3-m 99.3 1.8E-10 4E-15 111.3 20.9 70 231-306 102-172 (392)
140 PRK13977 myosin-cross-reactive 99.3 4.4E-11 9.6E-16 116.6 16.0 66 232-298 226-295 (576)
141 PRK08163 salicylate hydroxylas 99.3 3.6E-11 7.9E-16 116.5 14.6 66 229-303 106-172 (396)
142 TIGR00275 flavoprotein, HI0933 99.3 3.4E-11 7.4E-16 116.1 14.1 68 231-307 104-181 (400)
143 PRK07538 hypothetical protein; 99.3 1.9E-10 4E-15 112.0 18.8 73 229-305 99-173 (413)
144 PRK07588 hypothetical protein; 99.3 1.9E-10 4.2E-15 111.2 17.5 64 229-302 100-163 (391)
145 PRK06996 hypothetical protein; 99.3 3.5E-10 7.6E-15 109.5 19.3 115 228-349 111-225 (398)
146 PRK02106 choline dehydrogenase 99.3 2.6E-10 5.6E-15 115.1 18.4 66 238-306 206-273 (560)
147 TIGR01810 betA choline dehydro 99.3 2.6E-10 5.6E-15 114.4 18.0 68 236-306 197-266 (532)
148 TIGR03378 glycerol3P_GlpB glyc 99.2 7E-10 1.5E-14 105.0 19.1 69 231-304 262-331 (419)
149 PRK05675 sdhA succinate dehydr 99.2 4.2E-10 9.2E-15 113.1 17.6 185 84-297 1-190 (570)
150 PF01134 GIDA: Glucose inhibit 99.2 9.7E-11 2.1E-15 109.4 11.9 61 228-296 91-152 (392)
151 TIGR02734 crtI_fam phytoene de 99.2 4.8E-10 1.1E-14 112.0 17.3 57 232-295 219-275 (502)
152 PRK06753 hypothetical protein; 99.2 1.8E-09 3.9E-14 103.8 20.6 67 229-306 95-161 (373)
153 TIGR01789 lycopene_cycl lycope 99.2 1.7E-09 3.6E-14 103.1 20.0 151 228-408 85-241 (370)
154 PRK06475 salicylate hydroxylas 99.2 9.6E-10 2.1E-14 106.6 18.0 71 229-305 104-175 (400)
155 PF13738 Pyr_redox_3: Pyridine 99.2 1.1E-10 2.4E-15 102.1 10.3 59 231-297 81-139 (203)
156 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 5.8E-10 1.2E-14 107.5 16.0 70 232-306 103-172 (390)
157 PLN02172 flavin-containing mon 99.2 4E-10 8.7E-15 110.0 14.7 63 231-297 110-174 (461)
158 PRK05868 hypothetical protein; 99.2 3.1E-09 6.7E-14 101.7 20.3 62 232-303 105-166 (372)
159 PTZ00367 squalene epoxidase; P 99.2 1.1E-09 2.3E-14 109.3 17.2 35 70-104 32-66 (567)
160 TIGR00136 gidA glucose-inhibit 99.2 2.5E-10 5.5E-15 112.3 12.2 63 227-296 91-154 (617)
161 TIGR02733 desat_CrtD C-3',4' d 99.2 4.6E-09 1E-13 104.7 21.2 62 232-295 232-293 (492)
162 PRK07208 hypothetical protein; 99.1 1.7E-09 3.7E-14 107.5 17.5 62 232-295 218-279 (479)
163 COG3573 Predicted oxidoreducta 99.1 5.4E-10 1.2E-14 99.1 12.1 36 69-104 3-38 (552)
164 PF04820 Trp_halogenase: Trypt 99.1 7.4E-10 1.6E-14 108.1 13.7 68 227-302 149-216 (454)
165 TIGR02731 phytoene_desat phyto 99.1 1E-08 2.3E-13 101.1 20.1 64 231-295 212-275 (453)
166 PRK07236 hypothetical protein; 99.1 2.6E-09 5.7E-14 103.1 14.9 36 69-104 4-39 (386)
167 PLN02785 Protein HOTHEAD 99.0 4E-09 8.7E-14 105.9 15.3 67 238-306 226-301 (587)
168 PRK05329 anaerobic glycerol-3- 99.0 4.6E-09 9.9E-14 100.8 14.5 61 232-297 259-319 (422)
169 TIGR02462 pyranose_ox pyranose 99.0 3.5E-09 7.5E-14 104.3 13.8 62 244-306 226-290 (544)
170 COG0492 TrxB Thioredoxin reduc 99.0 1.7E-09 3.6E-14 99.1 10.8 60 230-299 59-118 (305)
171 PTZ00363 rab-GDP dissociation 99.0 1.3E-08 2.9E-13 98.4 17.2 60 232-297 232-291 (443)
172 PLN02927 antheraxanthin epoxid 99.0 2.5E-08 5.4E-13 100.3 19.6 36 69-104 79-114 (668)
173 KOG2415 Electron transfer flav 99.0 2E-09 4.3E-14 98.2 9.8 77 229-306 180-269 (621)
174 TIGR01292 TRX_reduct thioredox 99.0 4.5E-09 9.7E-14 97.8 12.4 33 72-104 1-33 (300)
175 PRK07233 hypothetical protein; 99.0 2.4E-08 5.3E-13 98.1 17.9 56 232-295 198-253 (434)
176 PLN02612 phytoene desaturase 99.0 5.3E-08 1.1E-12 98.0 19.4 57 232-294 308-364 (567)
177 COG2303 BetA Choline dehydroge 98.9 3.5E-08 7.5E-13 98.5 17.0 68 237-306 207-277 (542)
178 TIGR01816 sdhA_forward succina 98.9 2.2E-08 4.8E-13 100.8 15.6 65 232-298 119-183 (565)
179 PRK05249 soluble pyridine nucl 98.9 4.6E-08 1E-12 96.7 17.0 39 69-107 3-42 (461)
180 TIGR01424 gluta_reduc_2 glutat 98.9 2.8E-08 6.2E-13 97.6 14.8 37 71-107 2-38 (446)
181 PRK06370 mercuric reductase; V 98.9 4.4E-08 9.5E-13 96.8 15.4 42 69-110 3-44 (463)
182 TIGR01421 gluta_reduc_1 glutat 98.9 3.6E-08 7.7E-13 96.8 14.5 39 70-108 1-39 (450)
183 COG3380 Predicted NAD/FAD-depe 98.9 7.2E-09 1.6E-13 89.6 8.2 33 72-104 2-34 (331)
184 PRK06115 dihydrolipoamide dehy 98.9 6.1E-08 1.3E-12 95.7 15.8 38 70-107 2-40 (466)
185 PRK15317 alkyl hydroperoxide r 98.9 2.1E-08 4.5E-13 100.3 12.6 57 232-296 266-322 (517)
186 COG3075 GlpB Anaerobic glycero 98.9 9.6E-08 2.1E-12 84.9 15.1 65 233-302 259-324 (421)
187 TIGR03143 AhpF_homolog putativ 98.9 3E-08 6.5E-13 99.8 13.7 35 71-105 4-38 (555)
188 KOG1335 Dihydrolipoamide dehyd 98.9 2.1E-07 4.5E-12 84.5 17.3 61 232-294 252-312 (506)
189 PF00743 FMO-like: Flavin-bind 98.9 3.5E-08 7.6E-13 97.8 13.6 64 229-297 81-151 (531)
190 TIGR02732 zeta_caro_desat caro 98.9 2.1E-07 4.5E-12 91.9 18.9 62 233-296 220-284 (474)
191 KOG1399 Flavin-containing mono 98.9 1.8E-08 3.9E-13 96.8 10.9 63 230-296 88-153 (448)
192 KOG1238 Glucose dehydrogenase/ 98.8 1.3E-07 2.7E-12 92.3 16.5 70 236-306 256-329 (623)
193 COG1231 Monoamine oxidase [Ami 98.8 3.8E-08 8.2E-13 92.0 12.3 39 69-107 5-43 (450)
194 COG2072 TrkA Predicted flavopr 98.8 6.3E-08 1.4E-12 94.3 14.2 36 69-104 6-42 (443)
195 PRK05976 dihydrolipoamide dehy 98.8 1E-07 2.2E-12 94.5 16.0 38 70-107 3-40 (472)
196 TIGR03219 salicylate_mono sali 98.8 1.2E-07 2.6E-12 92.5 16.2 65 228-303 101-165 (414)
197 PRK06467 dihydrolipoamide dehy 98.8 1.2E-07 2.6E-12 93.7 16.2 35 70-104 3-37 (471)
198 COG0445 GidA Flavin-dependent 98.8 6.7E-09 1.5E-13 98.5 6.7 64 227-297 95-159 (621)
199 KOG2614 Kynurenine 3-monooxyge 98.8 1.5E-07 3.3E-12 86.8 15.2 34 71-104 2-35 (420)
200 PRK06116 glutathione reductase 98.8 7.9E-08 1.7E-12 94.7 14.6 37 71-107 4-40 (450)
201 PTZ00058 glutathione reductase 98.8 7.4E-08 1.6E-12 96.2 14.1 41 69-109 46-86 (561)
202 PRK06416 dihydrolipoamide dehy 98.8 1.3E-07 2.8E-12 93.6 15.2 38 70-107 3-40 (462)
203 PRK07818 dihydrolipoamide dehy 98.8 2E-07 4.4E-12 92.2 16.4 40 71-110 4-43 (466)
204 KOG4254 Phytoene desaturase [C 98.8 1.3E-07 2.8E-12 87.6 13.6 58 232-296 264-321 (561)
205 PLN02507 glutathione reductase 98.8 2.7E-07 5.9E-12 91.6 16.9 34 69-102 23-56 (499)
206 TIGR03140 AhpF alkyl hydropero 98.8 6.4E-08 1.4E-12 96.7 12.3 57 232-296 267-323 (515)
207 PRK10262 thioredoxin reductase 98.8 1.1E-07 2.3E-12 89.4 13.0 37 69-105 4-40 (321)
208 PRK06327 dihydrolipoamide dehy 98.8 3E-07 6.4E-12 91.1 16.5 33 70-102 3-35 (475)
209 TIGR01350 lipoamide_DH dihydro 98.8 8.3E-07 1.8E-11 87.9 19.6 60 232-297 211-270 (461)
210 PRK14694 putative mercuric red 98.8 2.1E-07 4.6E-12 92.0 15.3 41 68-108 3-43 (468)
211 COG2509 Uncharacterized FAD-de 98.7 2.6E-07 5.7E-12 86.1 14.6 71 226-303 167-237 (486)
212 PRK07251 pyridine nucleotide-d 98.7 2.3E-07 4.9E-12 91.1 15.2 35 70-104 2-36 (438)
213 PLN02487 zeta-carotene desatur 98.7 2.5E-07 5.3E-12 92.4 15.5 62 233-296 296-360 (569)
214 PF13450 NAD_binding_8: NAD(P) 98.7 2.8E-08 6.1E-13 69.3 4.9 32 76-107 1-32 (68)
215 PF13454 NAD_binding_9: FAD-NA 98.7 3.1E-07 6.7E-12 76.3 11.4 32 75-106 1-37 (156)
216 COG1249 Lpd Pyruvate/2-oxoglut 98.7 5.2E-07 1.1E-11 87.2 14.5 58 232-295 214-271 (454)
217 PLN02546 glutathione reductase 98.7 6.4E-07 1.4E-11 89.6 15.3 34 69-102 77-110 (558)
218 PF07992 Pyr_redox_2: Pyridine 98.6 8.9E-07 1.9E-11 77.1 14.2 32 73-104 1-32 (201)
219 PRK09897 hypothetical protein; 98.6 9.4E-07 2E-11 87.4 15.1 38 72-109 2-42 (534)
220 PRK13748 putative mercuric red 98.6 9.4E-07 2E-11 89.7 15.4 39 70-108 97-135 (561)
221 TIGR01438 TGR thioredoxin and 98.6 1.5E-06 3.2E-11 86.1 15.8 33 71-103 2-34 (484)
222 PTZ00153 lipoamide dehydrogena 98.6 9.6E-07 2.1E-11 89.6 14.3 34 70-103 115-148 (659)
223 PRK08255 salicylyl-CoA 5-hydro 98.6 2.2E-06 4.7E-11 89.6 17.3 55 228-303 93-147 (765)
224 TIGR01423 trypano_reduc trypan 98.6 2E-06 4.3E-11 85.0 15.4 34 70-103 2-36 (486)
225 PLN02529 lysine-specific histo 98.6 2.3E-06 5E-11 87.4 16.2 35 70-104 159-193 (738)
226 PRK07845 flavoprotein disulfid 98.5 3E-06 6.5E-11 83.7 16.5 36 72-107 2-37 (466)
227 PTZ00052 thioredoxin reductase 98.5 2.3E-06 5E-11 85.1 15.7 33 71-103 5-37 (499)
228 PRK12831 putative oxidoreducta 98.5 2.7E-06 5.9E-11 83.7 15.8 37 69-105 138-174 (464)
229 PLN02676 polyamine oxidase 98.5 2.7E-06 5.8E-11 84.2 15.5 38 71-108 26-64 (487)
230 TIGR01372 soxA sarcosine oxida 98.5 1.7E-06 3.7E-11 92.8 15.1 36 70-105 162-197 (985)
231 TIGR01316 gltA glutamate synth 98.5 7.2E-07 1.6E-11 87.6 11.3 36 69-104 131-166 (449)
232 PRK12769 putative oxidoreducta 98.5 2.6E-06 5.5E-11 87.8 15.6 58 238-296 512-584 (654)
233 PRK12779 putative bifunctional 98.5 4.7E-07 1E-11 95.7 9.8 35 70-104 305-339 (944)
234 KOG4716 Thioredoxin reductase 98.5 1.9E-06 4.1E-11 77.1 11.2 71 232-306 238-308 (503)
235 PRK12810 gltD glutamate syntha 98.5 2.1E-06 4.5E-11 84.9 12.8 67 238-306 335-412 (471)
236 PRK14727 putative mercuric red 98.5 4.8E-06 1E-10 82.6 15.3 39 69-107 14-53 (479)
237 KOG2311 NAD/FAD-utilizing prot 98.4 5.6E-07 1.2E-11 84.0 7.8 36 68-103 25-60 (679)
238 PRK06912 acoL dihydrolipoamide 98.4 9.8E-06 2.1E-10 80.0 15.5 37 73-109 2-38 (458)
239 PF00070 Pyr_redox: Pyridine n 98.4 1E-05 2.2E-10 58.7 11.6 31 74-104 2-32 (80)
240 PRK09853 putative selenate red 98.4 3.2E-06 7E-11 88.5 11.8 35 70-104 538-572 (1019)
241 PRK11749 dihydropyrimidine deh 98.4 2.9E-06 6.2E-11 83.8 10.9 36 70-105 139-174 (457)
242 PRK12775 putative trifunctiona 98.3 4.7E-06 1E-10 89.1 13.0 57 240-297 617-687 (1006)
243 PRK07846 mycothione reductase; 98.3 9E-06 1.9E-10 79.9 14.0 37 71-109 1-37 (451)
244 PRK08010 pyridine nucleotide-d 98.3 5.9E-07 1.3E-11 88.3 5.6 57 232-297 199-255 (441)
245 PRK09564 coenzyme A disulfide 98.3 2.9E-06 6.2E-11 83.6 10.4 32 73-104 2-35 (444)
246 TIGR01318 gltD_gamma_fam gluta 98.3 1.9E-05 4E-10 78.0 16.0 36 70-105 140-175 (467)
247 KOG0029 Amine oxidase [Seconda 98.3 6.7E-07 1.5E-11 87.7 5.7 39 69-107 13-52 (501)
248 PF13434 K_oxygenase: L-lysine 98.3 8.8E-06 1.9E-10 76.5 12.9 62 232-294 95-157 (341)
249 PRK12809 putative oxidoreducta 98.3 1.9E-05 4.2E-10 81.0 16.2 37 70-106 309-345 (639)
250 TIGR03452 mycothione_red mycot 98.3 8.6E-06 1.9E-10 80.1 12.5 37 71-109 2-38 (452)
251 COG1252 Ndh NADH dehydrogenase 98.3 9E-05 1.9E-09 70.2 18.2 63 230-303 207-269 (405)
252 PRK06292 dihydrolipoamide dehy 98.2 1.2E-06 2.6E-11 86.6 5.6 39 69-107 1-39 (460)
253 PLN02576 protoporphyrinogen ox 98.2 1.8E-06 3.8E-11 86.4 5.8 38 70-107 11-50 (496)
254 PRK12771 putative glutamate sy 98.2 1.1E-05 2.4E-10 81.7 11.2 37 70-106 136-172 (564)
255 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.2E-06 4.7E-11 81.2 5.6 36 72-107 2-38 (377)
256 TIGR02053 MerA mercuric reduct 98.2 2E-06 4.3E-11 85.2 5.5 60 232-296 207-266 (463)
257 COG0562 Glf UDP-galactopyranos 98.2 2.6E-06 5.6E-11 75.9 5.5 38 72-109 2-40 (374)
258 PLN02268 probable polyamine ox 98.2 2.1E-06 4.5E-11 84.4 5.5 36 72-107 1-37 (435)
259 COG2907 Predicted NAD/FAD-bind 98.1 1.4E-05 3.1E-10 72.0 9.5 38 70-108 7-45 (447)
260 PRK13512 coenzyme A disulfide 98.1 1.5E-05 3.3E-10 78.2 10.8 32 73-104 3-36 (438)
261 COG3349 Uncharacterized conser 98.1 2.3E-06 5E-11 81.8 4.9 35 73-107 2-36 (485)
262 TIGR03862 flavo_PP4765 unchara 98.1 3.4E-05 7.4E-10 72.8 12.3 69 230-307 84-162 (376)
263 PF06100 Strep_67kDa_ant: Stre 98.1 6.8E-05 1.5E-09 71.8 14.1 63 232-296 207-274 (500)
264 PF00996 GDI: GDP dissociation 98.1 5.1E-05 1.1E-09 72.8 13.5 65 221-296 224-288 (438)
265 PRK11883 protoporphyrinogen ox 98.1 2.8E-06 6.1E-11 83.9 5.1 35 73-107 2-39 (451)
266 KOG0404 Thioredoxin reductase 98.1 1.2E-05 2.6E-10 67.8 7.7 58 232-299 70-127 (322)
267 KOG0405 Pyridine nucleotide-di 98.1 3.7E-05 8.1E-10 69.3 10.8 38 69-106 18-56 (478)
268 TIGR00562 proto_IX_ox protopor 98.1 3.9E-06 8.4E-11 83.2 5.3 36 72-107 3-43 (462)
269 PRK09754 phenylpropionate diox 98.1 2.1E-05 4.6E-10 76.1 10.0 35 70-104 2-38 (396)
270 PRK05335 tRNA (uracil-5-)-meth 98.1 4.9E-06 1.1E-10 79.0 5.1 33 72-104 3-35 (436)
271 COG1148 HdrA Heterodisulfide r 98.0 7.7E-06 1.7E-10 76.8 6.1 69 236-307 418-491 (622)
272 TIGR03169 Nterm_to_SelD pyridi 98.0 1.3E-05 2.9E-10 76.7 7.4 32 73-104 1-35 (364)
273 PRK04965 NADH:flavorubredoxin 98.0 9.9E-05 2.2E-09 71.0 13.5 62 237-306 188-250 (377)
274 PTZ00318 NADH dehydrogenase-li 98.0 2.1E-05 4.6E-10 76.8 8.9 36 69-104 8-43 (424)
275 PLN02568 polyamine oxidase 98.0 9.5E-06 2.1E-10 81.0 5.9 39 69-107 3-46 (539)
276 PRK04965 NADH:flavorubredoxin 98.0 6.2E-05 1.3E-09 72.4 11.4 33 72-104 3-37 (377)
277 PRK05976 dihydrolipoamide dehy 98.0 0.00016 3.5E-09 71.7 14.1 33 72-104 181-213 (472)
278 PRK09754 phenylpropionate diox 97.9 0.00022 4.8E-09 69.1 14.3 33 72-104 145-177 (396)
279 PRK12416 protoporphyrinogen ox 97.9 1.1E-05 2.3E-10 80.0 4.9 36 72-107 2-44 (463)
280 COG1232 HemY Protoporphyrinoge 97.9 1.2E-05 2.5E-10 77.2 4.9 32 73-104 2-35 (444)
281 TIGR03315 Se_ygfK putative sel 97.9 1.5E-05 3.2E-10 84.1 6.0 37 70-106 536-572 (1012)
282 KOG3855 Monooxygenase involved 97.9 0.00066 1.4E-08 63.0 15.6 72 243-321 164-241 (481)
283 PRK07818 dihydrolipoamide dehy 97.9 0.00023 5E-09 70.5 13.8 56 237-296 218-273 (466)
284 PRK06115 dihydrolipoamide dehy 97.9 0.00031 6.6E-09 69.6 14.6 34 71-104 174-207 (466)
285 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.4E-05 3.1E-10 76.4 4.9 33 72-104 1-33 (433)
286 TIGR02053 MerA mercuric reduct 97.9 0.00032 6.8E-09 69.5 14.2 33 72-104 167-199 (463)
287 PRK06912 acoL dihydrolipoamide 97.8 0.00035 7.5E-09 69.1 13.9 33 72-104 171-203 (458)
288 PRK09564 coenzyme A disulfide 97.8 0.0003 6.4E-09 69.4 13.4 62 236-306 195-257 (444)
289 COG3634 AhpF Alkyl hydroperoxi 97.8 4.3E-05 9.2E-10 68.9 6.4 59 232-296 266-325 (520)
290 PRK14989 nitrite reductase sub 97.8 9.4E-05 2E-09 77.8 10.0 33 72-104 4-40 (847)
291 PRK06416 dihydrolipoamide dehy 97.8 0.0003 6.5E-09 69.7 13.1 33 72-104 173-205 (462)
292 TIGR02374 nitri_red_nirB nitri 97.8 8.2E-05 1.8E-09 78.1 9.0 45 242-296 64-108 (785)
293 PRK06327 dihydrolipoamide dehy 97.8 0.00061 1.3E-08 67.7 14.6 56 238-297 230-285 (475)
294 PLN02328 lysine-specific histo 97.8 3.4E-05 7.4E-10 79.5 5.8 36 70-105 237-272 (808)
295 PRK06370 mercuric reductase; V 97.8 0.00046 9.9E-09 68.4 13.6 33 72-104 172-204 (463)
296 TIGR03140 AhpF alkyl hydropero 97.8 0.00035 7.7E-09 70.0 12.9 50 245-296 401-450 (515)
297 PRK14989 nitrite reductase sub 97.8 0.00041 8.9E-09 73.1 13.7 64 237-306 192-256 (847)
298 PRK07251 pyridine nucleotide-d 97.7 0.0005 1.1E-08 67.6 13.4 33 72-104 158-190 (438)
299 PLN02852 ferredoxin-NADP+ redu 97.7 4.6E-05 1E-09 74.7 5.9 38 71-108 26-65 (491)
300 PRK06116 glutathione reductase 97.7 0.00058 1.2E-08 67.4 13.1 33 72-104 168-200 (450)
301 TIGR02374 nitri_red_nirB nitri 97.7 0.0006 1.3E-08 71.8 13.5 62 237-306 187-249 (785)
302 PRK10262 thioredoxin reductase 97.7 0.00077 1.7E-08 63.3 12.9 57 239-297 192-249 (321)
303 TIGR01421 gluta_reduc_1 glutat 97.7 0.00081 1.8E-08 66.2 13.4 33 72-104 167-199 (450)
304 PRK05249 soluble pyridine nucl 97.7 0.00082 1.8E-08 66.6 13.5 34 71-104 175-208 (461)
305 TIGR01292 TRX_reduct thioredox 97.6 0.00093 2E-08 62.0 13.1 57 243-302 187-245 (300)
306 PF10518 TAT_signal: TAT (twin 97.6 1.9E-05 4.1E-10 42.9 0.9 18 1-18 2-19 (26)
307 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00072 1.6E-08 66.3 12.7 33 72-104 138-170 (427)
308 PRK15317 alkyl hydroperoxide r 97.6 0.00087 1.9E-08 67.3 13.3 50 245-296 400-449 (517)
309 PRK12778 putative bifunctional 97.6 8.1E-05 1.8E-09 78.1 5.9 57 240-297 616-687 (752)
310 PF13434 K_oxygenase: L-lysine 97.6 0.001 2.2E-08 62.6 12.7 47 246-294 293-339 (341)
311 PRK14727 putative mercuric red 97.6 0.00094 2E-08 66.4 12.9 32 72-103 189-220 (479)
312 COG4529 Uncharacterized protei 97.6 0.0012 2.6E-08 63.0 12.6 38 72-109 2-43 (474)
313 PRK06467 dihydrolipoamide dehy 97.6 0.0015 3.3E-08 64.7 13.8 33 72-104 175-207 (471)
314 PRK06567 putative bifunctional 97.5 9.8E-05 2.1E-09 76.9 5.2 35 70-104 382-416 (1028)
315 TIGR01424 gluta_reduc_2 glutat 97.5 0.0016 3.5E-08 64.1 13.3 33 72-104 167-199 (446)
316 PLN02507 glutathione reductase 97.5 0.0018 3.9E-08 64.6 13.5 33 72-104 204-236 (499)
317 TIGR01438 TGR thioredoxin and 97.5 0.0019 4.2E-08 64.1 13.6 32 72-103 181-212 (484)
318 PRK14694 putative mercuric red 97.5 0.0017 3.6E-08 64.5 13.2 32 72-103 179-210 (468)
319 KOG1276 Protoporphyrinogen oxi 97.5 0.00012 2.7E-09 68.0 4.6 35 70-104 10-46 (491)
320 KOG2960 Protein involved in th 97.5 4.7E-05 1E-09 63.8 1.6 36 69-104 74-111 (328)
321 PRK12814 putative NADPH-depend 97.5 0.00016 3.5E-09 74.4 5.8 36 70-105 192-227 (652)
322 PRK08010 pyridine nucleotide-d 97.5 0.0018 3.8E-08 63.8 12.9 33 72-104 159-191 (441)
323 PTZ00058 glutathione reductase 97.5 0.0018 3.9E-08 65.1 12.9 34 71-104 237-270 (561)
324 PRK07845 flavoprotein disulfid 97.4 0.0025 5.5E-08 63.1 13.6 33 72-104 178-210 (466)
325 KOG0685 Flavin-containing amin 97.4 0.0002 4.3E-09 67.7 5.4 38 70-107 20-59 (498)
326 TIGR01423 trypano_reduc trypan 97.4 0.002 4.3E-08 64.0 12.7 54 236-296 235-288 (486)
327 PLN03000 amine oxidase 97.4 0.0002 4.3E-09 74.2 5.6 38 70-107 183-221 (881)
328 PRK13748 putative mercuric red 97.4 0.0019 4.2E-08 65.7 12.8 32 72-103 271-302 (561)
329 PTZ00153 lipoamide dehydrogena 97.4 0.0036 7.7E-08 64.1 14.2 33 72-104 313-345 (659)
330 KOG1336 Monodehydroascorbate/f 97.4 0.0018 3.8E-08 61.5 10.9 55 236-296 259-313 (478)
331 PTZ00188 adrenodoxin reductase 97.4 0.00029 6.2E-09 68.3 5.8 38 71-108 39-77 (506)
332 PRK12778 putative bifunctional 97.4 0.002 4.4E-08 67.7 12.5 33 72-104 571-604 (752)
333 PRK06292 dihydrolipoamide dehy 97.4 0.0024 5.2E-08 63.2 12.4 33 72-104 170-202 (460)
334 PTZ00052 thioredoxin reductase 97.3 0.004 8.7E-08 62.1 13.5 32 72-103 183-214 (499)
335 COG0446 HcaD Uncharacterized N 97.3 0.0023 5.1E-08 62.2 11.7 34 71-104 136-169 (415)
336 PRK12770 putative glutamate sy 97.3 0.00038 8.1E-09 66.3 5.8 36 71-106 18-53 (352)
337 PTZ00318 NADH dehydrogenase-li 97.3 0.0032 6.9E-08 61.6 12.4 59 236-306 232-290 (424)
338 PRK07846 mycothione reductase; 97.3 0.0034 7.3E-08 61.9 12.5 34 71-104 166-199 (451)
339 TIGR01317 GOGAT_sm_gam glutama 97.3 0.0004 8.6E-09 69.0 5.8 34 71-104 143-176 (485)
340 PRK13512 coenzyme A disulfide 97.3 0.0037 8E-08 61.4 12.5 33 72-104 149-181 (438)
341 KOG2403 Succinate dehydrogenas 97.3 0.00018 3.9E-09 68.9 3.1 35 71-105 55-89 (642)
342 PRK12770 putative glutamate sy 97.3 0.0034 7.3E-08 59.8 11.6 32 72-103 173-205 (352)
343 PLN02976 amine oxidase 97.2 0.0004 8.6E-09 74.8 5.6 36 70-105 692-727 (1713)
344 PLN02546 glutathione reductase 97.2 0.0068 1.5E-07 61.1 13.3 34 71-104 252-285 (558)
345 PRK12779 putative bifunctional 97.1 0.007 1.5E-07 64.7 13.3 32 72-103 448-479 (944)
346 PRK13984 putative oxidoreducta 97.1 0.00078 1.7E-08 69.1 5.8 38 70-107 282-319 (604)
347 TIGR03452 mycothione_red mycot 97.0 0.011 2.3E-07 58.4 13.1 33 72-104 170-202 (452)
348 COG0493 GltD NADPH-dependent g 97.0 0.00079 1.7E-08 65.5 4.4 34 72-105 124-157 (457)
349 TIGR01372 soxA sarcosine oxida 97.0 0.015 3.2E-07 63.1 14.3 61 242-306 361-422 (985)
350 TIGR03143 AhpF_homolog putativ 96.8 0.018 3.9E-07 58.4 13.0 33 72-104 144-176 (555)
351 KOG1800 Ferredoxin/adrenodoxin 96.7 0.0027 5.9E-08 58.4 5.1 39 71-109 20-60 (468)
352 COG1206 Gid NAD(FAD)-utilizing 96.7 0.002 4.4E-08 58.0 4.0 34 71-104 3-36 (439)
353 TIGR03169 Nterm_to_SelD pyridi 96.4 0.063 1.4E-06 51.4 13.2 57 237-305 196-252 (364)
354 KOG1439 RAB proteins geranylge 96.4 0.046 1E-06 50.9 11.0 65 232-304 232-296 (440)
355 PRK12814 putative NADPH-depend 96.4 0.046 1E-06 56.5 12.5 32 72-103 324-356 (652)
356 COG3486 IucD Lysine/ornithine 96.3 0.026 5.5E-07 52.9 8.9 36 69-104 3-39 (436)
357 PF01210 NAD_Gly3P_dh_N: NAD-d 96.3 0.0056 1.2E-07 50.7 4.3 30 74-103 2-31 (157)
358 COG4716 Myosin-crossreactive a 96.2 0.0095 2.1E-07 54.8 5.8 38 72-109 23-64 (587)
359 TIGR02811 formate_TAT formate 96.2 0.0021 4.5E-08 43.9 1.1 16 1-16 9-24 (66)
360 PF02737 3HCDH_N: 3-hydroxyacy 96.2 0.0079 1.7E-07 51.0 4.8 31 74-104 2-32 (180)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0074 1.6E-07 51.4 4.2 32 73-104 2-33 (185)
362 PF02558 ApbA: Ketopantoate re 96.1 0.01 2.2E-07 48.9 4.8 30 74-103 1-30 (151)
363 TIGR01317 GOGAT_sm_gam glutama 95.9 0.087 1.9E-06 52.5 11.7 33 72-104 284-317 (485)
364 COG1251 NirB NAD(P)H-nitrite r 95.8 0.064 1.4E-06 54.1 9.9 63 237-307 192-255 (793)
365 TIGR01409 TAT_signal_seq Tat ( 95.8 0.0052 1.1E-07 34.4 1.4 18 1-18 1-18 (29)
366 KOG0399 Glutamate synthase [Am 95.8 0.012 2.7E-07 61.4 4.9 34 71-104 1785-1818(2142)
367 PRK06567 putative bifunctional 95.8 0.079 1.7E-06 56.0 10.8 54 240-294 648-726 (1028)
368 PLN02852 ferredoxin-NADP+ redu 95.7 0.12 2.5E-06 51.2 11.3 51 245-296 288-354 (491)
369 PRK13984 putative oxidoreducta 95.5 0.2 4.2E-06 51.6 12.7 51 244-296 474-538 (604)
370 COG0569 TrkA K+ transport syst 95.4 0.021 4.4E-07 50.4 4.3 32 73-104 2-33 (225)
371 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.023 4.9E-07 53.0 4.5 32 73-104 4-35 (308)
372 PRK01438 murD UDP-N-acetylmura 95.2 0.025 5.5E-07 56.3 4.9 33 72-104 17-49 (480)
373 TIGR03315 Se_ygfK putative sel 95.1 0.33 7.2E-06 52.1 13.0 34 71-104 666-701 (1012)
374 PRK09853 putative selenate red 95.1 0.25 5.5E-06 52.8 12.0 33 72-104 669-703 (1019)
375 PRK02705 murD UDP-N-acetylmura 95.0 0.028 6E-07 55.7 4.6 32 73-104 2-33 (459)
376 PF01593 Amino_oxidase: Flavin 95.0 0.024 5.2E-07 55.4 4.1 52 237-296 214-265 (450)
377 KOG2495 NADH-dehydrogenase (ub 94.9 0.28 6E-06 46.4 10.1 63 234-304 275-337 (491)
378 PRK06249 2-dehydropantoate 2-r 94.8 0.048 1E-06 50.9 5.4 34 71-104 5-38 (313)
379 PRK07066 3-hydroxybutyryl-CoA 94.8 0.04 8.6E-07 51.3 4.6 33 72-104 8-40 (321)
380 PRK08293 3-hydroxybutyryl-CoA 94.8 0.043 9.4E-07 50.5 4.8 32 72-103 4-35 (287)
381 TIGR02354 thiF_fam2 thiamine b 94.7 0.054 1.2E-06 46.8 4.9 34 71-104 21-55 (200)
382 TIGR01350 lipoamide_DH dihydro 94.7 0.04 8.7E-07 54.6 4.7 33 72-104 171-203 (461)
383 PRK07819 3-hydroxybutyryl-CoA 94.7 0.046 9.9E-07 50.3 4.7 32 73-104 7-38 (286)
384 PRK05708 2-dehydropantoate 2-r 94.6 0.05 1.1E-06 50.5 4.9 32 72-103 3-34 (305)
385 PRK09260 3-hydroxybutyryl-CoA 94.6 0.046 1E-06 50.4 4.6 32 73-104 3-34 (288)
386 TIGR01470 cysG_Nterm siroheme 94.6 0.054 1.2E-06 46.9 4.7 32 72-103 10-41 (205)
387 COG5044 MRS6 RAB proteins gera 94.6 0.063 1.4E-06 49.5 5.2 37 71-107 6-42 (434)
388 KOG4405 GDP dissociation inhib 94.5 0.043 9.3E-07 51.2 4.0 47 69-115 6-53 (547)
389 PF01262 AlaDh_PNT_C: Alanine 94.5 0.067 1.4E-06 44.9 5.0 32 72-103 21-52 (168)
390 COG1004 Ugd Predicted UDP-gluc 94.5 0.049 1.1E-06 51.0 4.3 32 73-104 2-33 (414)
391 PF01488 Shikimate_DH: Shikima 94.4 0.086 1.9E-06 42.4 5.1 34 70-103 11-45 (135)
392 PF13738 Pyr_redox_3: Pyridine 94.3 0.049 1.1E-06 47.2 3.9 34 71-104 167-200 (203)
393 COG0492 TrxB Thioredoxin reduc 94.3 0.84 1.8E-05 42.3 12.1 54 246-304 193-247 (305)
394 COG1249 Lpd Pyruvate/2-oxoglut 94.3 0.06 1.3E-06 52.6 4.8 33 72-104 174-206 (454)
395 PRK07530 3-hydroxybutyryl-CoA 94.3 0.071 1.5E-06 49.2 5.2 32 72-103 5-36 (292)
396 PRK06719 precorrin-2 dehydroge 94.3 0.076 1.6E-06 43.9 4.7 32 71-102 13-44 (157)
397 KOG2755 Oxidoreductase [Genera 94.2 0.035 7.5E-07 48.7 2.6 31 74-104 2-34 (334)
398 PRK06718 precorrin-2 dehydroge 94.2 0.077 1.7E-06 45.9 4.7 33 71-103 10-42 (202)
399 PRK14106 murD UDP-N-acetylmura 94.2 0.074 1.6E-06 52.5 5.3 34 71-104 5-38 (450)
400 PRK06035 3-hydroxyacyl-CoA deh 94.1 0.073 1.6E-06 49.2 4.8 32 73-104 5-36 (291)
401 PF13241 NAD_binding_7: Putati 94.1 0.045 9.8E-07 41.6 2.8 34 70-103 6-39 (103)
402 cd01080 NAD_bind_m-THF_DH_Cycl 94.1 0.098 2.1E-06 43.7 4.9 35 69-103 42-77 (168)
403 COG3634 AhpF Alkyl hydroperoxi 94.0 0.49 1.1E-05 43.5 9.4 48 245-294 403-450 (520)
404 PRK12921 2-dehydropantoate 2-r 94.0 0.071 1.5E-06 49.6 4.5 30 73-102 2-31 (305)
405 PRK04148 hypothetical protein; 93.8 0.065 1.4E-06 42.5 3.3 32 72-104 18-49 (134)
406 PRK06522 2-dehydropantoate 2-r 93.8 0.086 1.9E-06 49.0 4.7 31 73-103 2-32 (304)
407 PRK15116 sulfur acceptor prote 93.8 0.11 2.3E-06 46.9 5.0 36 70-105 29-65 (268)
408 PRK05808 3-hydroxybutyryl-CoA 93.8 0.1 2.2E-06 48.0 5.0 32 73-104 5-36 (282)
409 PRK11064 wecC UDP-N-acetyl-D-m 93.8 0.085 1.9E-06 51.3 4.7 33 72-104 4-36 (415)
410 TIGR01316 gltA glutamate synth 93.7 0.089 1.9E-06 51.9 4.8 33 72-104 273-305 (449)
411 PRK08229 2-dehydropantoate 2-r 93.7 0.099 2.1E-06 49.5 4.9 31 73-103 4-34 (341)
412 COG0686 Ald Alanine dehydrogen 93.7 0.064 1.4E-06 48.3 3.3 33 71-103 168-200 (371)
413 TIGR00518 alaDH alanine dehydr 93.6 0.11 2.4E-06 49.6 5.1 33 71-103 167-199 (370)
414 PRK07688 thiamine/molybdopteri 93.5 0.13 2.8E-06 48.4 5.2 36 70-105 23-59 (339)
415 TIGR01763 MalateDH_bact malate 93.4 0.11 2.5E-06 48.1 4.7 31 73-103 3-34 (305)
416 PRK12831 putative oxidoreducta 93.4 0.11 2.3E-06 51.5 4.7 32 72-103 282-313 (464)
417 cd05292 LDH_2 A subgroup of L- 93.3 0.12 2.7E-06 48.0 4.8 32 73-104 2-35 (308)
418 PF00899 ThiF: ThiF family; I 93.3 0.11 2.5E-06 41.7 4.0 34 72-105 3-37 (135)
419 PF02254 TrkA_N: TrkA-N domain 93.2 0.19 4.1E-06 39.0 5.0 31 74-104 1-31 (116)
420 PRK12475 thiamine/molybdopteri 93.1 0.15 3.3E-06 47.9 5.0 36 70-105 23-59 (338)
421 cd01075 NAD_bind_Leu_Phe_Val_D 93.0 0.16 3.6E-06 43.8 4.7 32 72-103 29-60 (200)
422 PRK14620 NAD(P)H-dependent gly 93.0 0.14 3.1E-06 48.1 4.7 31 73-103 2-32 (326)
423 PLN02545 3-hydroxybutyryl-CoA 92.9 0.15 3.2E-06 47.2 4.8 32 73-104 6-37 (295)
424 TIGR03026 NDP-sugDHase nucleot 92.9 0.13 2.8E-06 50.1 4.5 32 73-104 2-33 (411)
425 PRK06130 3-hydroxybutyryl-CoA 92.9 0.15 3.3E-06 47.6 4.8 32 72-103 5-36 (311)
426 PRK14619 NAD(P)H-dependent gly 92.8 0.2 4.3E-06 46.7 5.3 33 72-104 5-37 (308)
427 cd01487 E1_ThiF_like E1_ThiF_l 92.7 0.19 4E-06 42.4 4.7 32 73-104 1-33 (174)
428 KOG3851 Sulfide:quinone oxidor 92.7 0.11 2.5E-06 46.9 3.4 36 69-104 37-74 (446)
429 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.7 0.15 3.3E-06 50.7 4.7 33 72-104 6-38 (503)
430 KOG2304 3-hydroxyacyl-CoA dehy 92.7 0.14 3.1E-06 43.9 3.7 35 70-104 10-44 (298)
431 COG1179 Dinucleotide-utilizing 92.6 0.19 4.2E-06 43.7 4.6 36 71-106 30-66 (263)
432 TIGR02356 adenyl_thiF thiazole 92.6 0.23 4.9E-06 43.1 5.1 37 69-105 19-56 (202)
433 cd00401 AdoHcyase S-adenosyl-L 92.5 0.18 3.9E-06 48.5 4.8 34 71-104 202-235 (413)
434 COG1748 LYS9 Saccharopine dehy 92.5 0.18 3.9E-06 47.8 4.6 32 72-103 2-34 (389)
435 PRK09424 pntA NAD(P) transhydr 92.5 0.18 4E-06 49.9 4.8 34 71-104 165-198 (509)
436 PF13478 XdhC_C: XdhC Rossmann 92.5 0.17 3.7E-06 40.6 3.8 31 74-104 1-31 (136)
437 PRK14618 NAD(P)H-dependent gly 92.4 0.19 4.2E-06 47.3 4.8 31 73-103 6-36 (328)
438 PRK11730 fadB multifunctional 92.3 0.17 3.7E-06 52.9 4.6 32 73-104 315-346 (715)
439 TIGR02355 moeB molybdopterin s 92.3 0.25 5.4E-06 44.1 5.1 35 71-105 24-59 (240)
440 PRK08268 3-hydroxy-acyl-CoA de 92.2 0.19 4.2E-06 50.1 4.8 33 72-104 8-40 (507)
441 PRK08644 thiamine biosynthesis 92.1 0.27 5.8E-06 42.9 5.0 36 70-105 27-63 (212)
442 PRK12549 shikimate 5-dehydroge 92.1 0.22 4.7E-06 45.7 4.6 33 71-103 127-160 (284)
443 cd01483 E1_enzyme_family Super 92.1 0.27 5.9E-06 39.9 4.7 33 73-105 1-34 (143)
444 PRK00094 gpsA NAD(P)H-dependen 92.1 0.22 4.8E-06 46.8 4.8 31 73-103 3-33 (325)
445 cd01339 LDH-like_MDH L-lactate 92.0 0.2 4.4E-06 46.4 4.4 31 74-104 1-32 (300)
446 cd05311 NAD_bind_2_malic_enz N 92.0 0.24 5.3E-06 43.7 4.7 33 72-104 26-61 (226)
447 TIGR02437 FadB fatty oxidation 92.0 0.19 4.1E-06 52.4 4.6 32 73-104 315-346 (714)
448 PRK15057 UDP-glucose 6-dehydro 92.0 0.2 4.3E-06 48.1 4.4 31 73-104 2-32 (388)
449 COG1250 FadB 3-hydroxyacyl-CoA 91.9 0.2 4.3E-06 46.0 4.1 32 72-103 4-35 (307)
450 PLN02353 probable UDP-glucose 91.9 0.24 5.2E-06 48.8 4.9 32 73-104 3-36 (473)
451 cd05191 NAD_bind_amino_acid_DH 91.7 0.48 1E-05 34.5 5.2 32 71-102 23-55 (86)
452 TIGR03736 PRTRC_ThiF PRTRC sys 91.6 0.31 6.7E-06 43.3 4.7 37 69-105 9-56 (244)
453 PRK08328 hypothetical protein; 91.5 0.33 7.2E-06 43.0 5.0 35 71-105 27-62 (231)
454 PRK11749 dihydropyrimidine deh 91.5 0.26 5.7E-06 48.8 4.8 33 71-103 273-306 (457)
455 PF03446 NAD_binding_2: NAD bi 91.4 0.34 7.5E-06 40.3 4.7 32 72-103 2-33 (163)
456 PRK05690 molybdopterin biosynt 91.4 0.34 7.4E-06 43.4 5.0 36 70-105 31-67 (245)
457 PRK07531 bifunctional 3-hydrox 91.4 0.29 6.3E-06 48.8 5.0 32 73-104 6-37 (495)
458 PRK08223 hypothetical protein; 91.4 0.36 7.9E-06 43.8 5.1 36 70-105 26-62 (287)
459 PTZ00082 L-lactate dehydrogena 91.3 0.35 7.7E-06 45.2 5.2 33 72-104 7-40 (321)
460 TIGR02441 fa_ox_alpha_mit fatt 91.3 0.24 5.3E-06 51.8 4.4 33 72-104 336-368 (737)
461 TIGR03467 HpnE squalene-associ 91.3 0.45 9.8E-06 46.3 6.2 55 235-296 200-254 (419)
462 PRK07417 arogenate dehydrogena 91.2 0.29 6.2E-06 44.9 4.4 31 73-103 2-32 (279)
463 PRK12548 shikimate 5-dehydroge 91.2 0.31 6.8E-06 44.8 4.7 33 71-103 126-159 (289)
464 cd05291 HicDH_like L-2-hydroxy 91.2 0.33 7.2E-06 45.1 4.9 32 73-104 2-35 (306)
465 PF00056 Ldh_1_N: lactate/mala 91.2 0.47 1E-05 38.4 5.1 31 73-103 2-35 (141)
466 PRK02472 murD UDP-N-acetylmura 91.1 0.28 6E-06 48.4 4.5 33 72-104 6-38 (447)
467 PF00670 AdoHcyase_NAD: S-aden 91.1 0.33 7.2E-06 39.9 4.1 33 72-104 24-56 (162)
468 PRK06223 malate dehydrogenase; 90.7 0.39 8.5E-06 44.7 4.9 33 72-104 3-36 (307)
469 cd00757 ThiF_MoeB_HesA_family 90.7 0.44 9.6E-06 42.1 5.0 35 71-105 21-56 (228)
470 PRK08306 dipicolinate synthase 90.6 0.45 9.7E-06 44.0 5.1 34 70-103 151-184 (296)
471 PTZ00142 6-phosphogluconate de 90.6 0.32 6.9E-06 47.9 4.3 33 72-104 2-34 (470)
472 COG1251 NirB NAD(P)H-nitrite r 90.5 2.3 5E-05 43.4 10.1 45 242-296 69-113 (793)
473 TIGR00561 pntA NAD(P) transhyd 90.4 0.41 8.9E-06 47.3 4.8 33 72-104 165-197 (511)
474 TIGR01915 npdG NADPH-dependent 90.4 0.47 1E-05 41.7 4.8 31 73-103 2-33 (219)
475 TIGR00936 ahcY adenosylhomocys 90.4 0.41 9E-06 45.9 4.7 34 71-104 195-228 (406)
476 cd01485 E1-1_like Ubiquitin ac 90.4 0.62 1.3E-05 40.2 5.4 35 71-105 19-54 (198)
477 COG1893 ApbA Ketopantoate redu 90.3 0.36 7.8E-06 44.8 4.2 32 73-104 2-33 (307)
478 PRK11154 fadJ multifunctional 90.3 0.35 7.5E-06 50.6 4.6 33 72-104 310-343 (708)
479 COG3486 IucD Lysine/ornithine 90.3 0.62 1.3E-05 44.0 5.6 50 244-295 290-339 (436)
480 TIGR02853 spore_dpaA dipicolin 90.3 0.43 9.4E-06 43.8 4.7 33 71-103 151-183 (287)
481 cd00755 YgdL_like Family of ac 90.3 0.49 1.1E-05 41.8 4.8 35 71-105 11-46 (231)
482 cd01078 NAD_bind_H4MPT_DH NADP 90.2 0.54 1.2E-05 40.4 5.0 33 71-103 28-61 (194)
483 TIGR01505 tartro_sem_red 2-hyd 90.1 0.39 8.4E-06 44.3 4.3 31 74-104 2-32 (291)
484 PRK04308 murD UDP-N-acetylmura 90.1 0.53 1.1E-05 46.4 5.5 33 72-104 6-38 (445)
485 TIGR02440 FadJ fatty oxidation 90.0 0.4 8.7E-06 50.0 4.7 32 73-104 306-338 (699)
486 TIGR03376 glycerol3P_DH glycer 90.0 0.47 1E-05 44.7 4.7 31 73-103 1-39 (342)
487 PRK01710 murD UDP-N-acetylmura 89.8 0.44 9.5E-06 47.2 4.7 33 72-104 15-47 (458)
488 KOG1371 UDP-glucose 4-epimeras 89.8 0.36 7.8E-06 44.0 3.6 32 72-103 3-35 (343)
489 PTZ00117 malate dehydrogenase; 89.6 0.6 1.3E-05 43.6 5.2 34 71-104 5-39 (319)
490 PRK05562 precorrin-2 dehydroge 89.6 0.63 1.4E-05 40.7 4.9 33 71-103 25-57 (223)
491 PRK05476 S-adenosyl-L-homocyst 89.6 0.52 1.1E-05 45.6 4.7 34 71-104 212-245 (425)
492 PRK04690 murD UDP-N-acetylmura 89.6 0.45 9.8E-06 47.2 4.5 33 72-104 9-41 (468)
493 cd01492 Aos1_SUMO Ubiquitin ac 89.5 0.59 1.3E-05 40.3 4.6 35 71-105 21-56 (197)
494 PRK03369 murD UDP-N-acetylmura 89.5 0.48 1E-05 47.3 4.7 32 72-103 13-44 (488)
495 TIGR00507 aroE shikimate 5-deh 89.5 0.56 1.2E-05 42.7 4.7 33 71-103 117-149 (270)
496 PRK12550 shikimate 5-dehydroge 89.5 0.56 1.2E-05 42.6 4.6 32 72-103 123-155 (272)
497 COG2072 TrkA Predicted flavopr 89.4 0.43 9.3E-06 46.9 4.2 34 71-104 175-208 (443)
498 COG1063 Tdh Threonine dehydrog 89.4 0.46 1E-05 45.1 4.3 31 73-103 171-202 (350)
499 COG0771 MurD UDP-N-acetylmuram 89.3 0.44 9.6E-06 46.2 4.0 34 71-104 7-40 (448)
500 COG1252 Ndh NADH dehydrogenase 89.2 0.32 7E-06 46.5 3.0 33 72-104 156-201 (405)
No 1
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=8e-59 Score=426.23 Aligned_cols=382 Identities=60% Similarity=1.017 Sum_probs=357.3
Q ss_pred CCChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccC
Q 013476 53 VPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLD 132 (442)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 132 (442)
.|.|+.....+. .+.++||+|||||..|.-+|+-++-+|++|.|+|++++++|+|++++.++|+|.+|++.+..+++
T Consensus 52 ~PsRe~~l~~l~---~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD 128 (680)
T KOG0042|consen 52 LPSREDLLEALK---STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLD 128 (680)
T ss_pred CCCHHHHHHHhh---cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcC
Confidence 456777666666 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccc
Q 013476 133 YGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMK 212 (442)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~ 212 (442)
.++.+.+++.+.|+..+.+..|+++..++.+.|.+.||+.++++.|.++|++++....+....++++++..+.+|.+
T Consensus 129 ~~qyrlV~eaL~ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL--- 205 (680)
T KOG0042|consen 129 YEQYRLVKEALNERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPML--- 205 (680)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccc---
Confidence 99999999999999999999999999999999999999999999999999999876666668999999999999999
Q ss_pred cccCCceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEcc
Q 013476 213 AKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAA 292 (442)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAt 292 (442)
..+...|.+.+++|+.|...+...++-.|..+|+.+....+|.+|..+++| +|.|+.+++..+|+...|+||.||+||
T Consensus 206 -~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~-kv~Ga~~rD~iTG~e~~I~Ak~VVNAT 283 (680)
T KOG0042|consen 206 -RKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG-KVIGARARDHITGKEYEIRAKVVVNAT 283 (680)
T ss_pred -cccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC-ceeeeEEEEeecCcEEEEEEEEEEeCC
Confidence 788899999999999999999999988999999999999999999999888 999999999889999999999999999
Q ss_pred CCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHH
Q 013476 293 GPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHED 372 (442)
Q Consensus 293 G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~ 372 (442)
|.|+..++++-....+..+.|..|.+++++.-++|...+++.|.+.||+.+|++||.|..+.|.++.+.+.+.+|.|+++
T Consensus 284 GpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg~TIaGTTD~pt~v~~~P~PtE~ 363 (680)
T KOG0042|consen 284 GPFSDSIRKMDDEDAKPICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIPTSVTHSPTPTED 363 (680)
T ss_pred CCccHHHHhhcccccCceeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCCceeeccCCCCCCCCCCCCCCHH
Confidence 99999999998777667788999999999999999999999998999999999999999999999999777788999999
Q ss_pred HHHHHHHHhhhhcCC--CCCCCCeeeeeeeccccccCCC-CCCCCCcccceeeEecCCCeEEEeccccccccC
Q 013476 373 EIQFILDAISDYLNV--KVRRTDVLSAWSGIRPLAMDPS-AKNTESISRDHVVCEDFPGLVTITGGKWTTYRR 442 (442)
Q Consensus 373 ~~~~~~~~~~~~~~~--~l~~~~~~~~~~G~r~~t~D~~-~~~~~~~~~~~~i~~~~~~~~~~~gg~~~~~~~ 442 (442)
.++.|++.++.++.. .+...++...|+|+||+..|++ +.++.+.+|+.+|...++|+++++||||||||+
T Consensus 364 dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~ 436 (680)
T KOG0042|consen 364 DIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRH 436 (680)
T ss_pred HHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHH
Confidence 999999999999943 4778899999999999999994 577889999999999999999999999999995
No 2
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=100.00 E-value=2.2e-50 Score=404.57 Aligned_cols=389 Identities=85% Similarity=1.314 Sum_probs=320.4
Q ss_pred CCccCCCChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHh
Q 013476 48 DSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127 (442)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~ 127 (442)
...+..+.+......+.......++||||||||+.|+++|+.|+++|++|+||||+++++|+|+++.+++|++++++...
T Consensus 48 ~~~~~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~ 127 (627)
T PLN02464 48 DPNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKA 127 (627)
T ss_pred ccCCCCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHH
Confidence 34444566665555542111245699999999999999999999999999999999999999999999999999998876
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCC
Q 013476 128 VFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP 207 (442)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 207 (442)
....++..+..+++.+.+...+....+++...+..+.+...++.....+.+...++.+....+++..++++.+++.+.+|
T Consensus 128 ~~~~~~~~~~l~~e~l~er~~l~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P 207 (627)
T PLN02464 128 VFQLDYGQLKLVFHALEERKQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFP 207 (627)
T ss_pred hhCCCccceeehHHHHHHHHHHHhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCC
Confidence 55555556667778888777777788888887777777777766666666777777776555555568999999999999
Q ss_pred ccccccccC----CceeEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEE
Q 013476 208 TLAMKAKDR----SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFD 282 (442)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~ 282 (442)
.+ ... ...+++.+.+++++|..++..|++.++++|++++.+++|++|..++ ++ ++++|++.+..+++...
T Consensus 208 ~L----~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g-~v~gV~v~d~~tg~~~~ 282 (627)
T PLN02464 208 TL----AKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG-RIVGARVRDNLTGKEFD 282 (627)
T ss_pred CC----CccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC-cEEEEEEEECCCCcEEE
Confidence 98 544 4677788889999999999999999999999999999999998874 36 89999887644555557
Q ss_pred EEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCC
Q 013476 283 TYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV 362 (442)
Q Consensus 283 i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~ 362 (442)
+.||.||+|+|.|+..|+++++....+.+.|.+|.+++++....+.....+++...+++.+|++|+.|.+++|+++++.+
T Consensus 283 i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~dgr~~~~~P~~g~~liGtTd~~~~ 362 (627)
T PLN02464 283 VYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSKTP 362 (627)
T ss_pred EEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecccccCCCCceEEecCCCCCCEEEEEecCCcEEEecCCCCCC
Confidence 89999999999999999999875544458999999999876554544456666567889999999988899999988765
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhcCC-CCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEecccccccc
Q 013476 363 ITLLPEPHEDEIQFILDAISDYLNV-KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYR 441 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~~~~~ 441 (442)
.+.++.++++.++.|++.+.+++ + .+...++.+.|+|+||+++|+..+...+.+|+++|..+.+|++.++||||||||
T Consensus 363 ~~~~~~~t~~ei~~Ll~~a~~~~-~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R 441 (627)
T PLN02464 363 ITMLPEPHEDEIQFILDAISDYL-NVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGKWTTYR 441 (627)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhh-CCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEECChHHHHH
Confidence 55677888999999999999999 5 788899999999999999997766778889999998877899999999999998
Q ss_pred C
Q 013476 442 R 442 (442)
Q Consensus 442 ~ 442 (442)
+
T Consensus 442 ~ 442 (627)
T PLN02464 442 S 442 (627)
T ss_pred H
Confidence 4
No 3
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=9.3e-48 Score=365.38 Aligned_cols=358 Identities=44% Similarity=0.687 Sum_probs=317.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||+||||||.|+-+|+.||.+|++|+|+|++++++|+|+++.+++|+|.+|+.. ..+..+.+.+.|...
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-------~e~~lvrEal~Er~v 82 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-------YEFSLVREALAEREV 82 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhh-------cchHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999876 345578899999999
Q ss_pred HHHhCCcccccCCCcccCCc-hhhHHHHHHHHHHHHHHhc-cCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 149 VIRNAPHLSNALPCMTPCFD-WFEVVYYWVGLKMYDLVAG-RHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
+....|+.......+.+... ++.......+..+++.+.. ....+..+.++..+.....|.+ +++...|++.+.+
T Consensus 83 L~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l----~~~~l~ga~~y~D 158 (532)
T COG0578 83 LLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPAL----KKDGLKGAFRYPD 158 (532)
T ss_pred HHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCccc----chhhccceEEEcc
Confidence 99999999999999888877 4556677788889999975 4455567888888888899999 7788888999999
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
+++++..++...+..+.++|.+++..++|+++.+++ .|+||.+++..+|+...++|+.||+|||.|+.+++++.+..
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~---~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREG---GVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE 235 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecC---CEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence 999999999999999999999999999999999987 39999999977888889999999999999999999998765
Q ss_pred CC--CcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCC-CCCCCCCHHHHHHHHHHhhh
Q 013476 307 VQ--PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVI-TLLPEPHEDEIQFILDAISD 383 (442)
Q Consensus 307 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 383 (442)
.. ..+.|.+|.+++++. ..+....++++...|++++|++|+.+..++|.|+...+. ++++.++++.++.+++.+..
T Consensus 236 ~~~~~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~ 314 (532)
T COG0578 236 QSPHIGVRPSKGSHLVVDK-KFPINQAVINRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNR 314 (532)
T ss_pred CCCCccceeccceEEEecc-cCCCCceEEeecCCCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHHHHHHHHHh
Confidence 43 259999999999998 555566777775559999999999999999999988654 67789999999999999997
Q ss_pred hcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccccccccC
Q 013476 384 YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTYRR 442 (442)
Q Consensus 384 ~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~~~~~~ 442 (442)
++.+.+...+|.+.|+|+||+..|+. .++..++|+++|..+. +|+++++||||||||+
T Consensus 315 ~~~~~l~~~dI~~syaGVRPL~~~~~-~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~ 374 (532)
T COG0578 315 YLAPPLTREDILSTYAGVRPLVDDGD-DDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRK 374 (532)
T ss_pred hhhccCChhheeeeeeeeeeccCCCC-CchhhccCceEEEecCCCCCeEEEecchhHHhHH
Confidence 77788999999999999999999743 3688999999999988 9999999999999995
No 4
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=9e-42 Score=336.64 Aligned_cols=354 Identities=35% Similarity=0.500 Sum_probs=268.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.++||||||||++|+++|+.|+++|++|+||||+++++|+|+++.+++|++.++... ..+....+.+.++..+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-------~~~~l~~e~l~er~~l 77 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-------YEFRLVREALAEREVL 77 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-------ccHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999988654 1345677778888887
Q ss_pred HHhCCcccccCCCcccCCchh-hHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 150 IRNAPHLSNALPCMTPCFDWF-EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
....+++...+.+..+..... .......+..+++.+.....+...+.+...... ..|.+ . +...+++.+.+++
T Consensus 78 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~-~~~~L----~-~~l~g~~~~~dg~ 151 (508)
T PRK12266 78 LRMAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDP-AGSPL----K-PEITRGFEYSDCW 151 (508)
T ss_pred HHhCCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcc-cCCCc----c-hhhcEEEEEcCcc
Confidence 788888777665544433211 111123344556554322222222222222111 11344 2 3356677788999
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~~~ 307 (442)
++|..++..+.+.++++|++++++++|+++..++ + . ++|.+.+..+|+..++.||.||+|+|.|+..++++ +|...
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~ 228 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARREN-G-L-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS 228 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-E-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence 9999999999999999999999999999998875 3 3 45666643456566899999999999999999875 46654
Q ss_pred CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCC-CCCCCCCCCHHHHHHHHHHhhhhc
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDT-VITLLPEPHEDEIQFILDAISDYL 385 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 385 (442)
..++.|.+|++++++..... ....+++ ..+++++|++|+ .+..++|+++.+. ..+.+..++++.++.+++.+.+++
T Consensus 229 ~~~i~p~kG~~lvl~~~~~~-~~~~~~~-~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~ 306 (508)
T PRK12266 229 PYGIRLVKGSHIVVPRLFDH-DQAYILQ-NPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYF 306 (508)
T ss_pred CcceeeeeeEEEEECCcCCC-CcEEEEe-CCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 55799999999988754332 2223334 678899999999 5788899987653 234567889999999999999999
Q ss_pred CCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec----CCCeEEEeccccccccC
Q 013476 386 NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRR 442 (442)
Q Consensus 386 ~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~----~~~~~~~~gg~~~~~~~ 442 (442)
++.+...++.+.|+|+||+++|+.. ++.+.+|+|+|..+ .+|+|+++||||||||+
T Consensus 307 p~~l~~~~ii~~waG~RPl~~d~~~-~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~ 366 (508)
T PRK12266 307 KKQLTPADVVWTYSGVRPLCDDESD-SAQAITRDYTLELDDENGGAPLLSVFGGKITTYRK 366 (508)
T ss_pred CCCCCHHHEEEEeeeeEeeCCCCCC-CcccCCcceEEEecccCCCCCeEEEEcChHHHHHH
Confidence 4479999999999999999999743 57888999999876 47899999999999984
No 5
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-41 Score=335.36 Aligned_cols=354 Identities=36% Similarity=0.529 Sum_probs=268.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||+|||||++|+++|+.|+++|++|+||||+++++|+|+++++++|++.++.... ..+.+.+.+.+...
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~-------~~~l~~e~~~e~~~ 76 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYY-------EFRLVREALIEREV 76 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhc-------cHHHHHHHHHHHHH
Confidence 45599999999999999999999999999999999999999999999999998886432 34466677777776
Q ss_pred HHHhCCcccccCCCcccCCch-hhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476 149 VIRNAPHLSNALPCMTPCFDW-FEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 227 (442)
+....+++........+.... ........+..+++.+.....++..+.++..+.....| + . +...+++.+.++
T Consensus 77 l~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l----~-~~~~~a~~~~dg 150 (502)
T PRK13369 77 LLAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-L----K-PEYTKGFEYSDC 150 (502)
T ss_pred HHHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCC-c----h-HhcCEEEEEcCe
Confidence 666667665554433332211 11122334556666654334444456666655544444 3 1 345677778899
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQN 306 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~~ 306 (442)
++++..++..+...++++|++++.+++|+++..++ ..++|.+.+ ..|+...++||.||+|+|.|+..+.++ +|..
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~~~~v~~~~-~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~ 226 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG---GLWRVETRD-ADGETRTVRARALVNAAGPWVTDVIHRVAGSN 226 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC---CEEEEEEEe-CCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence 99999999999999999999999999999998875 334567665 235556799999999999999999884 4655
Q ss_pred CCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEccCCCCCC-CCCCCCCCHHHHHHHHHHhhhh
Q 013476 307 VQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDY 384 (442)
Q Consensus 307 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 384 (442)
...++.|.+|++++++...... ...+++ ..+++.+|++|+. +..++|+++.+.+ .+++..++++.++.+++.+.++
T Consensus 227 ~~~~v~p~kG~~lv~~~~~~~~-~~~~~~-~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~ 304 (502)
T PRK13369 227 SSRNVRLVKGSHIVVPKFWDGA-QAYLFQ-NPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRY 304 (502)
T ss_pred CCcceEEeeEEEEEeCCccCCC-ceEEEe-CCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4356899999999887543321 223333 5678889999996 5778899986633 3457788999999999999999
Q ss_pred cCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC----CCeEEEeccccccccC
Q 013476 385 LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF----PGLVTITGGKWTTYRR 442 (442)
Q Consensus 385 ~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~----~~~~~~~gg~~~~~~~ 442 (442)
+++.+...++.+.|+|+||+++|+. +++.+.+|+|.|..+. +|+|++.||||||||.
T Consensus 305 ~~~~l~~~~i~~~waGlRPl~~d~~-~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~ 365 (502)
T PRK13369 305 FKEKLRREDVVHSFSGVRPLFDDGA-GNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRK 365 (502)
T ss_pred hCCCCCHhHEEEEeeceEEcCCCCC-CCcccCCcceEEeeccccCCCCeEEEeCChHhhHHH
Confidence 9448999999999999999999863 4567788999998653 7899999999999984
No 6
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2e-40 Score=329.59 Aligned_cols=346 Identities=28% Similarity=0.417 Sum_probs=252.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||+|||||+.|+++|+.|+++|++|+||||++++.++|+++.|++|++.+|.... .......+.+...
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~--------~~~~~~~~~e~~~ 75 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTD--------AESARECISENQI 75 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccC--------HHHHHHHHHHHHH
Confidence 44699999999999999999999999999999999999999999999999987764311 1112222222222
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
+....+++......+.......+..+. ...++.. ...|++ .++++.+++...+|.+ . +...+++++.+++
T Consensus 76 l~~~a~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~Gi~-~~~l~~~e~~~~eP~l----~-~~~~ga~~~~dg~ 145 (546)
T PRK11101 76 LKRIARHCVEPTDGLFITLPEDDLAFQ---ATFIRAC-EEAGIE-AEAIDPQQALILEPAV----N-PALIGAVKVPDGT 145 (546)
T ss_pred HHHhchHhhcccCCceEEeccccHHHH---HHHHHHH-HHcCCC-cEEECHHHHHHhCCCc----C-ccceEEEEecCcE
Confidence 222222222111111111111111111 1122222 256776 7899999999999998 4 3456777766899
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~ 308 (442)
++|..++.++...++++|++++++++|++|..++ + +|+||++.+..+++...|+||.||+|+|.|+..|.++.+..
T Consensus 146 vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~-- 221 (546)
T PRK11101 146 VDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG-D-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR-- 221 (546)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-C-eEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC--
Confidence 9999999999999999999999999999999876 5 89999987644565678999999999999999999988764
Q ss_pred CcccCCCeeEEEeCCCCCCCCceEEeee--cCCCcEEEEEecCCcEEEccCCCCC--CCCCCCCCCHHHHHHHHHHhhhh
Q 013476 309 PMICPSSGVHIVLPDYYSPEGMGLIVPK--TKDGRVVFMLPWLGRTVAGTTDSDT--VITLLPEPHEDEIQFILDAISDY 384 (442)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~g~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 384 (442)
.++.|.||++++++..... ..+.+. ..++ .++.|+++.+++|++.+.. +..++..++++.++.+++.+.++
T Consensus 222 ~~i~p~kG~~lv~~~~~~~---~vi~~~~~~~~~--~~~vp~~~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l 296 (546)
T PRK11101 222 IRMFPAKGSLLIMDHRINN---HVINRCRKPADA--DILVPGDTISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKL 296 (546)
T ss_pred CceeecceEEEEECCccCc---eeEeccCCCCCC--CEEEecCCEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999753321 122221 1233 3467887888999988653 23345788999999999999999
Q ss_pred cCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec-----CCCeEEEeccccccccC
Q 013476 385 LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRR 442 (442)
Q Consensus 385 ~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~-----~~~~~~~~gg~~~~~~~ 442 (442)
+ |.+...++.+.|+|+||++.+....+..+.+|+++|..+ .+|+|+++|||+||||.
T Consensus 297 ~-P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGkltt~r~ 358 (546)
T PRK11101 297 A-PVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL 358 (546)
T ss_pred C-CCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECChHHHHHH
Confidence 8 899999999999999999653211235667888766543 27899999999999983
No 7
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=100.00 E-value=2.6e-34 Score=285.64 Aligned_cols=330 Identities=26% Similarity=0.359 Sum_probs=242.2
Q ss_pred HHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcccC
Q 013476 87 ALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPC 166 (442)
Q Consensus 87 A~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (442)
|+.|+++|++|+||||++++.|+|++|+|++|++.+|.... ...+...+.+...+....++.......+...
T Consensus 1 ArdLa~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~~--------~~~a~~~~~~~~~l~~~a~~~~~~~g~L~va 72 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTD--------QESARECIEENRILKRIARHCVEDTGGLFIT 72 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcccccccccccCcCcchhhhccC--------HHHHHHHHHHHHHHHHhChHhccCCCceEEe
Confidence 67899999999999999999999999999999998775321 1122222333322222222222222211111
Q ss_pred CchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccChHHHHHHHHHHHHHcC
Q 013476 167 FDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG 246 (442)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G 246 (442)
....+..... ..+... +..|++ .++++++++.+.+|.+ .. ...+++++.++.++|..++..+.+.++++|
T Consensus 73 ~~~~~~~~~~---~~~~~~-~~~gi~-~~~l~~~e~~~~~P~l----~~-~~~ga~~~~dg~vdp~~l~~al~~~A~~~G 142 (516)
T TIGR03377 73 LPEDDLEFQK---QFLAAC-REAGIP-AEEIDPAEALRLEPNL----NP-DLIGAVKVPDGTVDPFRLVAANVLDAQEHG 142 (516)
T ss_pred cCcccHHHHH---HHHHHH-HHCCCC-ceEECHHHHHHHCCCC----Ch-hheEEEEeCCcEECHHHHHHHHHHHHHHcC
Confidence 1111111110 122222 356776 7899999999999998 43 456677767899999999999999999999
Q ss_pred ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCC
Q 013476 247 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS 326 (442)
Q Consensus 247 v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~ 326 (442)
++|+++++|++|..++ + ++++|++.+..+|+...++|+.||+|+|.|+..|.+++|.. .++.|.+|++++++....
T Consensus 143 a~i~~~t~V~~i~~~~-~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~ 218 (516)
T TIGR03377 143 ARIFTYTKVTGLIREG-G-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD--IRMFPAKGALLIMNHRIN 218 (516)
T ss_pred CEEEcCcEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC--CceecceEEEEEECCccc
Confidence 9999999999999876 5 89999987544565668999999999999999999998874 478999999999975432
Q ss_pred CCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeecccccc
Q 013476 327 PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM 406 (442)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~ 406 (442)
......... ..++ .|++|+.+.+++|++.+..+.+++..++++.++.+++.+.+++ |.+...++.+.|+|+||++.
T Consensus 219 ~~~~~~~~~-~~~g--~~~~P~~~~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~-P~l~~~~i~~~~aGvRPl~~ 294 (516)
T TIGR03377 219 NTVINRCRK-PSDA--DILVPGDTISIIGTTSERIDDPDDLPVTQEEVDVLLREGAKLA-PMLAQTRILRAFAGVRPLVA 294 (516)
T ss_pred ccccccccC-CCCC--cEEEECCCeEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhC-cccccCCEEEEEeecccccC
Confidence 211111111 2344 3578998888999998765445567789999999999999999 89999999999999999987
Q ss_pred CCCCCCCCCcccceeeEec-----CCCeEEEeccccccccC
Q 013476 407 DPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRR 442 (442)
Q Consensus 407 D~~~~~~~~~~~~~~i~~~-----~~~~~~~~gg~~~~~~~ 442 (442)
++...+..+.+|+|+|..+ .+|+|+++|||+||||.
T Consensus 295 ~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGkltt~r~ 335 (516)
T TIGR03377 295 VDDDPSGRNISRGIVLLDHAERDGLPGFITITGGKLTTYRL 335 (516)
T ss_pred CCCCCCccccCCCeEEeecccccCCCCeEEEecchHHHHHH
Confidence 6433456788999977543 38899999999999984
No 8
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=1.3e-31 Score=258.38 Aligned_cols=331 Identities=18% Similarity=0.183 Sum_probs=223.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCccCCCCcccchhhhhHHh-hhccCcchHHHHHHHHHHH
Q 013476 71 PLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKA-VFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 146 (442)
++||+|||||++|+++|++|+++ |++|+||||.. ++.++|+++.|+++++..+.... ...+.....+.+.++..+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 80 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ- 80 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 48999999999999999999999 99999999996 78889999999988764332111 111111111111111111
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
... .+ .....+....+..+.... .+.++.. +..+++ .++++.+++.+.+|.+ . ...+.+.+.+
T Consensus 81 ---~~~--~~-~~~G~l~~~~~~~~~~~l---~~~~~~~-~~~g~~-~~~l~~~el~~~~P~l----~--~~~al~~p~~ 143 (393)
T PRK11728 81 ---HGI--PY-EECGKLLVATSELELERM---EALYERA-RANGIE-VERLDAEELREREPNI----R--GLGAIFVPST 143 (393)
T ss_pred ---cCC--Cc-ccCCEEEEEcCHHHHHHH---HHHHHHH-HHCCCc-EEEeCHHHHHHhCCCc----c--ccceEEcCCc
Confidence 011 11 111111111111111111 1222333 256666 8899999999999987 3 3444455678
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
+++++..++..|.+.+++.|++++++++|+++..+++ .+ .|.. .+ .++.||.||+|+|.|+..+++.+|+.
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~---~~---g~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN--GV-VVRT---TQ---GEYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eE-EEEE---CC---CEEEeCEEEECCCcchHHHHHHhCCC
Confidence 8999999999999999999999999999999987664 43 3433 12 26899999999999999999999887
Q ss_pred CCCcccCCCeeEEEeCCCCCCCCceEEeeecCC---CcEEEEEec-CCcEEEccCCCCCC--CCCCCC-C----------
Q 013476 307 VQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPE-P---------- 369 (442)
Q Consensus 307 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~-~g~~~~g~~~~~~~--~~~~~~-~---------- 369 (442)
.+.++.|.+|+++.+...........+++.... ...+|+.|. +|++++|++..... ..++.. .
T Consensus 215 ~~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~ 294 (393)
T PRK11728 215 PDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILT 294 (393)
T ss_pred CCCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHh
Confidence 556799999999988754322222344442111 234788896 67899997543321 111211 1
Q ss_pred -----------CHHHHHHH---------HHHhhhhcCCCCCCCCeeeeeeeccc--cccCCCCCCCCCcccceeeEecCC
Q 013476 370 -----------HEDEIQFI---------LDAISDYLNVKVRRTDVLSAWSGIRP--LAMDPSAKNTESISRDHVVCEDFP 427 (442)
Q Consensus 370 -----------~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~G~r~--~t~D~~~~~~~~~~~~~~i~~~~~ 427 (442)
+.+.++++ ++.+.+++ |.+...++.+.|+|+|| +++|+.. ..||+|... +
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-P~l~~~~i~~~~~G~Rp~~~~~d~~~------~~d~~i~~~-~ 366 (393)
T PRK11728 295 YPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYC-PSLTLSDLQPYPAGVRAQAVSRDGKL------VDDFLFVET-P 366 (393)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhC-CCCCHHHcccCCCceeeeeeCCCCCc------cCceEEecC-C
Confidence 34455555 58899999 99999999999999999 8999653 369977654 8
Q ss_pred CeEEEeccc
Q 013476 428 GLVTITGGK 436 (442)
Q Consensus 428 ~~~~~~gg~ 436 (442)
+++++.|..
T Consensus 367 ~~~~~~~~~ 375 (393)
T PRK11728 367 RSLHVCNAP 375 (393)
T ss_pred CEEEEcCCC
Confidence 888888764
No 9
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=1.1e-30 Score=253.58 Aligned_cols=327 Identities=18% Similarity=0.237 Sum_probs=220.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
...+||+|||||++|+++|++|+++ |. +|+||||+.++.++|+++.++++.+...... .. ......+.+.+.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~--~~----~~~~s~~l~~~l 101 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPES--AE----LYEHAMKLWEGL 101 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccc--cH----HHHHHHHHHHHH
Confidence 4569999999999999999999995 95 8999999998889999999988654322110 00 001111112211
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC-----CceeE
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-----SLKGA 221 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~~~ 221 (442)
.........+.. ...+.......+.... .+.++.. +..|++ .++++.+++.+.+|.+ ..+ ...++
T Consensus 102 ~~~~~~~~~~~~-~G~l~~a~~~~~~~~l---~~~~~~~-~~~g~~-~~~l~~~el~~~~P~l----~~~~~~~~~~~ga 171 (407)
T TIGR01373 102 SQDLNYNVMFSQ-RGVLNLCHSTADMDDG---ARRVNAM-RLNGVD-AELLSPEQVRRVIPIL----DFSPDARFPVVGG 171 (407)
T ss_pred HHHhCCCcCEEe-ccEEEEeCCHHHHHHH---HHHHHHH-HHcCCC-eEEeCHHHHHHhCCCC----ccccccccceeEE
Confidence 111111111111 1111111111111111 1222222 256776 7899999999999988 322 23444
Q ss_pred EE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476 222 VV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300 (442)
Q Consensus 222 ~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~ 300 (442)
++ +..+.++|..+...|++.++++|++++.+++|++++.++++ ++++|.+. + ..+.|+.||+|+|+|+..+.
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~~~v~t~---~---g~i~a~~vVvaagg~~~~l~ 244 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGG-RVIGVETT---R---GFIGAKKVGVAVAGHSSVVA 244 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cEEEEEeC---C---ceEECCEEEECCChhhHHHH
Confidence 44 55788999999999999999999999999999999865435 77666653 2 26999999999999999999
Q ss_pred hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHH
Q 013476 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILD 379 (442)
Q Consensus 301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 379 (442)
+++++.. ++.+.+++.++.+..... ...++. . ++..+|++|. +|++++|+..+.. ...+..++.+..+.+++
T Consensus 245 ~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~y~~p~~~g~~~ig~~~~~~-~~~~~~~~~~~~~~l~~ 317 (407)
T TIGR01373 245 AMAGFRL--PIESHPLQALVSEPLKPI--IDTVVM-S-NAVHFYVSQSDKGELVIGGGIDGY-NSYAQRGNLPTLEHVLA 317 (407)
T ss_pred HHcCCCC--CcCcccceEEEecCCCCC--cCCeEE-e-CCCceEEEEcCCceEEEecCCCCC-CccCcCCCHHHHHHHHH
Confidence 8887763 577888776655432211 111221 1 2234788897 4678888764321 12233456778889999
Q ss_pred HhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC-CCeEEEeccc
Q 013476 380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF-PGLVTITGGK 436 (442)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~-~~~~~~~gg~ 436 (442)
.+.+++ |.+....+.+.|+|+||+|+| +.|+|.+.+ +|+|+++|-.
T Consensus 318 ~~~~~~-P~l~~~~~~~~w~G~~~~t~D----------~~PiIg~~~~~gl~~a~G~~ 364 (407)
T TIGR01373 318 AILEMF-PILSRVRMLRSWGGIVDVTPD----------GSPIIGKTPLPNLYLNCGWG 364 (407)
T ss_pred HHHHhC-CCcCCCCeEEEeccccccCCC----------CCceeCCCCCCCeEEEeccC
Confidence 999999 889888899999999999999 689998864 8999999843
No 10
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=1.9e-31 Score=254.94 Aligned_cols=328 Identities=27% Similarity=0.355 Sum_probs=223.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhh-hhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVR-YLEKAVFNLDYGQLKLVFHALEERKQVIR 151 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (442)
||+|||||++|+++|++|+++|++|+|||++.+++++|+++.+++++... ..... ..+...+.+..+..+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~ 73 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQ-------YARLARESVEFWRELAE 73 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHH-------HHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccccccccccccccccccccccccc-------ccchhhhhccchhhhhh
Confidence 89999999999999999999999999999999899999999999987631 11111 11122222222222222
Q ss_pred hCC--cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476 152 NAP--HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (442)
Q Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (442)
... ........+............ .+..+.+ +..+++ .+.++.+++...+|.+ ......+.+.+.++.+
T Consensus 74 ~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~g~i 144 (358)
T PF01266_consen 74 EYGIPVGFRPCGSLYLAEDEEDAESL---ERLLDRL-RRNGIP-YELLSPEELRELFPFL----NPRIEGGVFFPEGGVI 144 (358)
T ss_dssp HTTSSCEEEECEEEEEESSHHHHHHH---HHHHHHH-HHTTTT-EEEEEHHHHHHHSTTS----STTTEEEEEETTEEEE
T ss_pred hcCcccccccccccccccchhhhhhc---ccccccc-cccccc-ccccchhhhhhhhccc----ccchhhhhcccccccc
Confidence 211 111111111111111111111 1222333 256664 8999999999999988 5223344444567779
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~ 309 (442)
++..++..|.+.+++.|++|+.+++|++|..+++ +|+||.+. + . .++||.||+|+|.|+..|++.++...
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~v~gv~~~---~--g-~i~ad~vV~a~G~~s~~l~~~~~~~~-- 214 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG--RVTGVRTS---D--G-EIRADRVVLAAGAWSPQLLPLLGLDL-- 214 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT--EEEEEEET---T--E-EEEECEEEE--GGGHHHHHHTTTTSS--
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhhccc--cccccccc---c--c-ccccceeEecccccceeeeecccccc--
Confidence 9999999999999999999999999999999884 88888773 2 2 49999999999999999999887764
Q ss_pred cccCCCeeEEEeCCCCCCCCceEEeee--cCCCcEEEEEecCCcEEEccCCCCCCCCCC--------CCCCHHHHHHHHH
Q 013476 310 MICPSSGVHIVLPDYYSPEGMGLIVPK--TKDGRVVFMLPWLGRTVAGTTDSDTVITLL--------PEPHEDEIQFILD 379 (442)
Q Consensus 310 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~ 379 (442)
++.+.+++++.++.............. ..+....|++|+.+.+++|.+......... ....++ ++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 293 (358)
T PF01266_consen 215 PLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRPGGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLE 293 (358)
T ss_dssp TEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEETTEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHH
T ss_pred cccccceEEEEEccCCcccccccccccccccccccceecccccccccccccccccccccccccccccccccHH-HHHhHH
Confidence 688999998888754443322332211 223356888998888889844422111101 011222 568999
Q ss_pred HhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEeccccc
Q 013476 380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGGKWT 438 (442)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg~~~ 438 (442)
.+.+++ |.+...++.+.|+|+||+|+| +.|+|... .+++|.++|..+.
T Consensus 294 ~~~~~~-p~l~~~~v~~~~~g~r~~t~d----------~~p~ig~~~~~~~l~~~~g~~~~ 343 (358)
T PF01266_consen 294 RLARLL-PGLGDAEVVRSWAGIRPFTPD----------GRPIIGELPGSPNLYLAGGHGGH 343 (358)
T ss_dssp HHHHHS-GGGGGSEEEEEEEEEEEEETT----------SECEEEEESSEEEEEEEECETTC
T ss_pred HHHHHH-HHhhhccccccccceeeeccC----------CCeeeeecCCCCCEEEEECCCch
Confidence 999999 899999999999999999999 68999986 4889998877644
No 11
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.98 E-value=3.7e-30 Score=240.94 Aligned_cols=339 Identities=23% Similarity=0.260 Sum_probs=237.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC--CeEEEEeccC-CCCCCccCCCCcccchhhhhHHhh-hccCcchHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAV-FNLDYGQLKLVFHALEE 145 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (442)
.++||||||||+.|+++|++|++.+ ++|+||||.. ++.++|.+|+|.+|.++.+..... .++....-..++++..+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998 9999999996 888999999999999976644311 11111111111111111
Q ss_pred HHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476 146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY 225 (442)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 225 (442)
. .. .+... ..+.......+..... ++++... .+++...+.++.+++.++.|.+ ......+.+.+.
T Consensus 82 ~----~~--~f~~~-g~l~vA~~e~e~~~L~---~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l----~~~~~aal~~p~ 146 (429)
T COG0579 82 L----GI--PFINC-GKLSVATGEEEVERLE---KLYERGK-ANGVFDLEILDKEEIKELEPLL----NEGAVAALLVPS 146 (429)
T ss_pred h----CC--ccccc-CeEEEEEChHHHHHHH---HHHHHHh-hCCCcceeecCHHHHHhhCccc----cccceeeEEcCC
Confidence 1 11 11111 2223333333333322 3344443 6777778999999999999998 434444555577
Q ss_pred CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~ 305 (442)
.+.+++..++.+|.+.++++|+++++|++|+.|+++++| ++-+.. .+|+.. ++||.||+|+|.++..|+++.|+
T Consensus 147 ~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg--~~~~~~---~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~ 220 (429)
T COG0579 147 GGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG--VFVLNT---SNGEET-LEAKFVINAAGLYADPLAQMAGI 220 (429)
T ss_pred CceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc--eEEEEe---cCCcEE-EEeeEEEECCchhHHHHHHHhCC
Confidence 889999999999999999999999999999999998864 332333 344433 99999999999999999999999
Q ss_pred CCCCcccCCCeeEEEeCCCCCCCCceEEeeecCC---CcEEEEEec-CCcEEEccCCCCCC--CCCCCCCCHHHHHHHHH
Q 013476 306 NVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPEPHEDEIQFILD 379 (442)
Q Consensus 306 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~-~g~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~ 379 (442)
.....+.|++|++++++..........+++.... +..+.++|. +|.+++|++..... ...+...+.+..+.+..
T Consensus 221 ~~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~ 300 (429)
T COG0579 221 PEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRK 300 (429)
T ss_pred CcccccCccceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHH
Confidence 8667889999999999875444445566653322 345667775 67899999987642 22234556666777777
Q ss_pred HhhhhcCCCCC-CCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEecc
Q 013476 380 AISDYLNVKVR-RTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG 435 (442)
Q Consensus 380 ~~~~~~~~~l~-~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg 435 (442)
...+.+ +++. .......+.|.||+..++ .....+|+|... .++++.++|-
T Consensus 301 ~~~~~~-~~~~~~~~~~~~y~~~r~~~~~~-----~~~~~~~~ip~~~~~~~~~~~aGi 353 (429)
T COG0579 301 ANSRGM-PDLGIKNNVLANYAGIRPILKEP-----RLPALDFIIPEAKDEDWFINVAGI 353 (429)
T ss_pred hhhhhc-ccccccccchhhhheeccccccc-----cccccceecccccCCCCceeeeeE
Confidence 788888 6766 455667789999987442 333478888743 4777777664
No 12
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.98 E-value=4.7e-30 Score=250.06 Aligned_cols=329 Identities=17% Similarity=0.115 Sum_probs=215.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHH----------hhh----------cc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEK----------AVF----------NL 131 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~----------~~~----------~~ 131 (442)
||+|||||++|+++|++|+++|.+|+|||+.. ++.++|++|+|++++++.+... ... ..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCCC
Confidence 89999999999999999999999999999985 7889999999998876532110 000 00
Q ss_pred CcchHH-------------------HHHHHHHH----HHHHHHh---CCcccccCCCcccCCchhhHHHHHHHHHHHHHH
Q 013476 132 DYGQLK-------------------LVFHALEE----RKQVIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLV 185 (442)
Q Consensus 132 ~~~~~~-------------------~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (442)
...... .+.+.... +..+.+. ...+ .....+....+....... .+..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~-~~~G~l~~a~~~~~~~~l---~~~~~~~ 157 (416)
T PRK00711 82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEG-RQGGTLQLFRTQQQLDAA---AKDIAVL 157 (416)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc-ccCcEEEEECCHHHHHHH---HHHHHHH
Confidence 000000 01111111 1111110 0000 000111111111111111 1222333
Q ss_pred hccCCCCcceecCHhhHHhhCCcccccccc--CCceeEEE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC
Q 013476 186 AGRHLLHLSRYYSAQESAELFPTLAMKAKD--RSLKGAVV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE 262 (442)
Q Consensus 186 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~ 262 (442)
+..|++ .++++.+++.+.+|.+ .. ....++++ +.++.++|..++..|.+.++++|++|+++++|++++.++
T Consensus 158 -~~~g~~-~~~l~~~e~~~~~P~l----~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~ 231 (416)
T PRK00711 158 -EEAGVP-YELLDRDELAAVEPAL----AGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG 231 (416)
T ss_pred -HHcCCC-ceecCHHHHHHhCCCc----cCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence 256776 8899999999999987 31 34445544 567899999999999999999999999999999998876
Q ss_pred CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcE
Q 013476 263 ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRV 342 (442)
Q Consensus 263 ~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (442)
+ ++++|+.. ..++.||.||+|+|.|+..+++.+|.. .++.|.+++.+.++..... ..+.... ......
T Consensus 232 -~-~~~~v~t~------~~~~~a~~VV~a~G~~~~~l~~~~g~~--~pi~p~rg~~~~~~~~~~~-~~p~~~~-~~~~~~ 299 (416)
T PRK00711 232 -G-RITGVQTG------GGVITADAYVVALGSYSTALLKPLGVD--IPVYPLKGYSLTVPITDED-RAPVSTV-LDETYK 299 (416)
T ss_pred -C-EEEEEEeC------CcEEeCCEEEECCCcchHHHHHHhCCC--cccCCccceEEEEecCCCC-CCCceeE-EecccC
Confidence 4 66666542 237899999999999999998888765 3688999987766432211 1111111 111212
Q ss_pred EEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceee
Q 013476 343 VFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV 422 (442)
Q Consensus 343 ~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i 422 (442)
+++.+.++++++|+..+. ...+..+++...+.+.+.+.+++ |.+....+.+.|+|+||+|+| +.|+|
T Consensus 300 ~~~~~~~~~~~iG~~~~~--~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~r~~t~D----------~~PiI 366 (416)
T PRK00711 300 IAITRFDDRIRVGGMAEI--VGFDLRLDPARRETLEMVVRDLF-PGGGDLSQATFWTGLRPMTPD----------GTPIV 366 (416)
T ss_pred EEEeecCCceEEEEEEEe--cCCCCCCCHHHHHHHHHHHHHHC-CCcccccccceeeccCCCCCC----------CCCEe
Confidence 233334678888876544 22344566777888888999999 888888899999999999999 68899
Q ss_pred EecC-CCeEEEeccc
Q 013476 423 CEDF-PGLVTITGGK 436 (442)
Q Consensus 423 ~~~~-~~~~~~~gg~ 436 (442)
...+ +|+|+++|-.
T Consensus 367 G~~~~~gl~~a~G~~ 381 (416)
T PRK00711 367 GATRYKNLWLNTGHG 381 (416)
T ss_pred CCcCCCCEEEecCCc
Confidence 8764 8999888743
No 13
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.98 E-value=1.4e-29 Score=246.00 Aligned_cols=333 Identities=18% Similarity=0.173 Sum_probs=211.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhh-------hHHhh-h------------c
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRY-------LEKAV-F------------N 130 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~-------~~~~~-~------------~ 130 (442)
+||+|||||++|+++|++|+++|++|+||||+. ++.++|++|+|++.+.... ..... . .
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPK 81 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecCC
Confidence 699999999999999999999999999999997 7889999999988653210 00000 0 0
Q ss_pred cCcchHHH-----------------HHHHHHHHHH----HHHh---CCcccccCCCcccCCchhhHHHHHHHHHHHHHHh
Q 013476 131 LDYGQLKL-----------------VFHALEERKQ----VIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 186 (442)
Q Consensus 131 ~~~~~~~~-----------------~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (442)
.......+ .++...+... +.+. ...+. ....+....+....... .+..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~G~l~~a~~~~~~~~l---~~~~~~~- 156 (410)
T PRK12409 82 PSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLE-RRGILHIYHDKAGFDHA---KRVNALL- 156 (410)
T ss_pred CCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceee-cCcEEEEECCHHHHHhc---cHHHHHH-
Confidence 00000000 1111111111 1111 01111 01111111111111111 1222333
Q ss_pred ccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCC
Q 013476 187 GRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASN 265 (442)
Q Consensus 187 ~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~ 265 (442)
+..+++ .++++.+++.+.+|.+ .. ...++++ +.++++++..++..|.+.+++.|++|+++++|+++..+++
T Consensus 157 ~~~g~~-~~~l~~~e~~~~~P~l----~~-~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~-- 228 (410)
T PRK12409 157 AEGGLE-RRAVTPEEMRAIEPTL----TG-EYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGG-- 228 (410)
T ss_pred HhcCCC-eEEcCHHHHHHhCCCC----cc-ccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--
Confidence 255665 7899999999999987 43 3344444 5677899999999999999999999999999999987663
Q ss_pred eEEEEEEEECCCC-ceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCC--CCCCceEEeeecCCCcE
Q 013476 266 RIIGARIRNNLSG-KEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYY--SPEGMGLIVPKTKDGRV 342 (442)
Q Consensus 266 ~v~gV~~~~~~~g-~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~ 342 (442)
.++ +.+.+ .++ +...++||.||+|+|.|+..+.++++.. .++.|++|+++.++... .....+.+.....+..+
T Consensus 229 ~~~-v~~~~-~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~--~~i~p~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 304 (410)
T PRK12409 229 GVV-LTVQP-SAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR--VNVYPVKGYSITVNLDDEASRAAAPWVSLLDDSAKI 304 (410)
T ss_pred EEE-EEEEc-CCCCccceEecCEEEECCCcChHHHHHHhCCC--CccccCCceEEEeecCCccccccCCceeeeecCCcE
Confidence 443 33432 111 0246899999999999999999888754 46889999877664321 11112221111122222
Q ss_pred EEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceee
Q 013476 343 VFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV 422 (442)
Q Consensus 343 ~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i 422 (442)
.+..+..+++++|++.+. ...+..++++.++.+++.+.+++ |.+....+. .|+|+|++|+| +.|+|
T Consensus 305 ~~~~~~~~~~~igg~~~~--~~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~-~w~G~r~~t~D----------~~Pii 370 (410)
T PRK12409 305 VTSRLGADRFRVAGTAEF--NGYNRDIRADRIRPLVDWVRRNF-PDVSTRRVV-PWAGLRPMMPN----------MMPRV 370 (410)
T ss_pred EEEecCCCcEEEEEEEEe--cCCCCCCCHHHHHHHHHHHHHhC-CCCCccccc-eecccCCCCCC----------CCCee
Confidence 222223467778877654 22345567778999999999999 888877766 79999999999 68899
Q ss_pred Eec-CCCeEEEecc
Q 013476 423 CED-FPGLVTITGG 435 (442)
Q Consensus 423 ~~~-~~~~~~~~gg 435 (442)
... .||+|+++|=
T Consensus 371 G~~~~~~l~~~~G~ 384 (410)
T PRK12409 371 GRGRRPGVFYNTGH 384 (410)
T ss_pred CCCCCCCEEEecCC
Confidence 875 4899988873
No 14
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.97 E-value=1.2e-28 Score=235.88 Aligned_cols=321 Identities=17% Similarity=0.126 Sum_probs=202.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIR 151 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (442)
+||+|||||++|+++|++|+++|++|+|||+...+.++|+++.|++.+..... .. ..++..+....+..+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~-~~-------~~~l~~~~~~~~~~l~~ 72 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAP-GP-------AWDRARRSREIWLELAA 72 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCC-cc-------HHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999888899999998875421110 00 01111111111111111
Q ss_pred hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeCcccC
Q 013476 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMN 230 (442)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~ 230 (442)
...........+............ .+..+.. +..+.+ .++++.+++.+.+|.+ ..+...++++ +.+++++
T Consensus 73 ~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~g~~-~~~l~~~~~~~~~p~l----~~~~~~~~~~~~~~g~v~ 143 (365)
T TIGR03364 73 KAGIWVRENGSLHLARTEEELAVL---EEFAATR-EPAEYR-VELLTPAEVAAKFPAL----RLDGLRGGLHSPDELRVE 143 (365)
T ss_pred HcCCCEEeCCEEEEeCCHHHHHHH---HHHHHhh-hhcCCC-eEEECHHHHHHhCCCC----CccCceEEEEcCCCeeEC
Confidence 110001111111111111111111 0111111 234544 7899999999999977 4345555554 5688999
Q ss_pred hHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476 231 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~ 309 (442)
|..++..|.+.+.++ |++|+++++|++|.. + . |.+ ..| .+.||.||+|+|.|+..|++.++.. .
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~-~---v~t---~~g---~i~a~~VV~A~G~~s~~l~~~~~~~--~ 208 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G-T---VRT---SRG---DVHADQVFVCPGADFETLFPELFAA--S 208 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C-e---EEe---CCC---cEEeCEEEECCCCChhhhCcchhhc--c
Confidence 999999999988876 999999999999953 2 2 333 122 4689999999999999888766443 3
Q ss_pred cccCCCeeEEEeCCCCCCC-------CceEEe---------------------ee-cCCCcEEEEEec-CCcEEEccCCC
Q 013476 310 MICPSSGVHIVLPDYYSPE-------GMGLIV---------------------PK-TKDGRVVFMLPW-LGRTVAGTTDS 359 (442)
Q Consensus 310 ~~~~~~g~~~~~~~~~~~~-------~~~~~~---------------------~~-~~~~~~~~~~p~-~g~~~~g~~~~ 359 (442)
++.|++++++.++...... ...... +. ...+..+|++|. +|++++|++.+
T Consensus 209 ~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~ 288 (365)
T TIGR03364 209 GVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHE 288 (365)
T ss_pred CcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCccc
Confidence 6889999988765422100 000000 00 012335788997 56799998875
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEecccc
Q 013476 360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKW 437 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~ 437 (442)
... ..+...+....+.+.+.+.+++ .+.+.++.+.|+|+||+|+| ..|++....+|+|.++|-.+
T Consensus 289 ~~~-~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~w~G~r~~t~d----------~~~v~~~~~~g~~~a~G~~g 353 (365)
T TIGR03364 289 YGL-APDPFDDEEIDNLILAEAKTIL--GLPDLDIVERWQGVYASSPP----------APIFLERPDDGVTVVVVTSG 353 (365)
T ss_pred ccC-CCCCcchHHHHHHHHHHHHHhc--CCCCCceEEEEeEEecCCCC----------CCceecCCCCCeEEEEecCC
Confidence 422 1122234444556777777665 57778899999999999998 57777544689998888443
No 15
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.97 E-value=2.2e-28 Score=240.02 Aligned_cols=331 Identities=15% Similarity=0.081 Sum_probs=202.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHH----HH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVF----HA 142 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 142 (442)
+.++||+|||||++|+++|++|+++ |.+|+|||++.++.|+|++|+|++.+...........+..+....+. +.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 101 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA 101 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence 3459999999999999999999998 99999999998899999999997643211111000001111111111 11
Q ss_pred HHHHHHHH---HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCce
Q 013476 143 LEERKQVI---RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK 219 (442)
Q Consensus 143 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 219 (442)
+.....+. .....+.. ...+.......+.... .+..+.+. +.|++..++++.+++.+.+|.. ....
T Consensus 102 ~~~~~~l~~~~~i~~~~~~-~G~l~~a~~~~~~~~l---~~~~~~~~-~~G~~~~~~l~~~e~~~~~~~~------~~~~ 170 (460)
T TIGR03329 102 VLEIAAFCEQHNIDAQLRL-DGTLYTATNPAQVGSM---DPVVDALE-RRGINSWQRLSEGELARRTGSA------RHLE 170 (460)
T ss_pred HHHHHHHHHHhCCCCCccc-CCEEEEecCHHHHHHH---HHHHHHHH-HhCCCCeEEcCHHHHHHHhCCC------cceE
Confidence 11111111 11111111 1111111111111111 12223332 4666535899999998887642 2233
Q ss_pred eEEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476 220 GAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (442)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l 299 (442)
+.+.+.++.++|.+++..|.+.+++.|++|+++++|++|.. + ....|.. .. ..+.|+.||+|||.|+..+
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~~~~v~t---~~---g~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G---QPAVVRT---PD---GQVTADKVVLALNAWMASH 240 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C---CceEEEe---CC---cEEECCEEEEccccccccc
Confidence 44556789999999999999999999999999999999975 3 2223333 12 3689999999999999888
Q ss_pred hhhhCCCCCCcccCCCeeEEEeCCCCCC-----CCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCC--CCCCC--CC
Q 013476 300 RKLADQNVQPMICPSSGVHIVLPDYYSP-----EGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTV--ITLLP--EP 369 (442)
Q Consensus 300 ~~~~g~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~--~~~~~--~~ 369 (442)
++.++. .+.|++++++...+.... ......+. .......|++|. +|++++|....... ...++ ..
T Consensus 241 ~~~~~~----~~~p~~~~~~~t~pl~~~~~~~~~~~~~~~~-d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~ 315 (460)
T TIGR03329 241 FPQFER----SIAIVSSDMVITEPAPDLLAATGLDHGTSVL-DSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQ 315 (460)
T ss_pred ChhhcC----eEEEeccceEecCCCcHHHHhhcCCCCceEe-cchhhhhheeECCCCcEEEcCCccccccCcccccccCC
Confidence 876543 345566665554321110 00011111 111112467775 45688886532211 00011 12
Q ss_pred CHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec--CCCeEEEeccc
Q 013476 370 HEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGGK 436 (442)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~--~~~~~~~~gg~ 436 (442)
.....+.+.+.+.++| |.+.+.++.+.|+|++++|+| +.|+|... .+|+|.++|=.
T Consensus 316 ~~~~~~~l~~~~~~~f-P~L~~~~i~~~W~G~~~~t~D----------~~P~iG~~~~~~gl~~a~G~~ 373 (460)
T TIGR03329 316 PSPYEALLTRSLRKFF-PALAEVPIAASWNGPSDRSVT----------GLPFFGRLNGQPNVFYGFGYS 373 (460)
T ss_pred chHHHHHHHHHHHHhC-CCcCCCeeeEEEeceeCCCCC----------CCceeeeecCCCCEEEEeCcC
Confidence 2334567888899999 889999999999999999999 68999875 48999998833
No 16
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.97 E-value=4.4e-28 Score=233.19 Aligned_cols=323 Identities=18% Similarity=0.125 Sum_probs=204.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
+++||+|||||++|+++|++|+++|++|+||||+..+. +++..+.+++....... .....+.....+. +.+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~-~~~~~l~~~s~~~----~~~l~ 76 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEG-PAYVPLVLRAQEL----WRELE 76 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCC-chhhHHHHHHHHH----HHHHH
Confidence 46999999999999999999999999999999987543 34444444433211100 0000011111111 11111
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCC-ceeEEEeeC
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRS-LKGAVVYYD 226 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~ 226 (442)
..... ..+... ..+...... ..... +..+.+ ++.+++ .++++.+++.+.+|.+ .... ..+.+.+.+
T Consensus 77 ~~~~~-~~~~~~-G~l~~~~~~--~~~~~---~~~~~~-~~~g~~-~~~l~~~~~~~~~P~l----~~~~~~~a~~~~~~ 143 (376)
T PRK11259 77 RESGE-PLFVRT-GVLNLGPAD--SDFLA---NSIRSA-RQHGLP-HEVLDAAEIRRRFPQF----RLPDGYIALFEPDG 143 (376)
T ss_pred HHhCC-ccEEEE-CCEEEcCCC--CHHHH---HHHHHH-HHcCCC-cEEECHHHHHHhCCCC----cCCCCceEEEcCCC
Confidence 11111 011111 111111111 11110 122222 256765 7899999999999988 4333 334455668
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
+.++|..++..+.+.+.+.|++++++++|+++..+++ .+ .|.. .++ .+.||.||+|+|.|+..|+..+
T Consensus 144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~---~~g---~~~a~~vV~A~G~~~~~l~~~~--- 211 (376)
T PRK11259 144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD--GV-TVTT---ADG---TYEAKKLVVSAGAWVKDLLPPL--- 211 (376)
T ss_pred CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC--eE-EEEe---CCC---EEEeeEEEEecCcchhhhcccc---
Confidence 8999999999999999999999999999999998764 33 2333 222 6899999999999998888763
Q ss_pred CCCcccCCCeeEEEeCCCCC---CCCceEEeeecCCCcEEEEEec-CCc-EEEccCCCCC----CCCCCCCC-CHHHHHH
Q 013476 307 VQPMICPSSGVHIVLPDYYS---PEGMGLIVPKTKDGRVVFMLPW-LGR-TVAGTTDSDT----VITLLPEP-HEDEIQF 376 (442)
Q Consensus 307 ~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~-~g~-~~~g~~~~~~----~~~~~~~~-~~~~~~~ 376 (442)
..++.|.+++++.+..... ....+.+.....++..+|++|. +++ +++|++.... ....+... .+...+.
T Consensus 212 -~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (376)
T PRK11259 212 -ELPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAE 290 (376)
T ss_pred -cCCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHH
Confidence 2467888898887754211 1112333322345556888897 556 8898776411 01111122 3566888
Q ss_pred HHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccc
Q 013476 377 ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGK 436 (442)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~ 436 (442)
+++.+.+++ |.+.. +.+.|+|+|++||| +.|+|..++ +|+++++|-.
T Consensus 291 l~~~~~~~~-P~~~~--~~~~~~g~~~~t~D----------~~P~ig~~~~~~gl~~~~G~~ 339 (376)
T PRK11259 291 LRPFLRNYL-PGVGP--CLRGAACTYTNTPD----------EHFIIDTLPGHPNVLVASGCS 339 (376)
T ss_pred HHHHHHHHC-CCCCc--cccceEEecccCCC----------CCceeecCCCCCCEEEEeccc
Confidence 999999999 77665 78889999999999 689999864 8999998844
No 17
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=4e-27 Score=226.84 Aligned_cols=324 Identities=15% Similarity=0.124 Sum_probs=203.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC--CCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS--SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
+||+|||||++|+++|++|+++|++|+|||+.... .+++..+++++.... .......+...+.+. |+.+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~--~~~~~~~l~~~s~~~-~~~l~~~--- 74 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY--PEDFYTPMMLECYQL-WAQLEKE--- 74 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeecc--CchhHhHHHHHHHHH-HHHHHHH---
Confidence 69999999999999999999999999999998643 233433444433211 000011111111111 1111111
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCce-eEEEeeCcc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK-GAVVYYDGQ 228 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~ 228 (442)
... ..... ...+....... ... .+..+.+ +..+++ .+.++.+++.+.+|.+ ...... +.+.+.++.
T Consensus 75 ~~~-~~~~~-~G~l~~~~~~~--~~~---~~~~~~~-~~~g~~-~~~l~~~e~~~~~P~l----~~~~~~~~~~~~~~g~ 141 (380)
T TIGR01377 75 AGT-KLHRQ-TGLLLLGPKEN--QFL---KTIQATL-SRHGLE-HELLSSKQLKQRFPNI----RVPRNEVGLLDPNGGV 141 (380)
T ss_pred hCC-eeEee-cCeEEEcCCCc--HHH---HHHHHHH-HHcCCC-eEEcCHHHHHHhCCCC----cCCCCceEEEcCCCcE
Confidence 010 00111 11111111111 111 1223333 256665 7899999999999987 433333 444567889
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~ 308 (442)
++|..++..|.+.+++.|++++++++|+++..+++ .+. |.+. + .++.||.||+|+|.|+..|++++|+..
T Consensus 142 i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~--~~~-v~~~---~---~~i~a~~vV~aaG~~~~~l~~~~g~~~- 211 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGATVRDGTKVVEIEPTEL--LVT-VKTT---K---GSYQANKLVVTAGAWTSKLLSPLGIEI- 211 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCC--eEE-EEeC---C---CEEEeCEEEEecCcchHHHhhhcccCC-
Confidence 99999999999999999999999999999988763 442 4432 2 268999999999999999999888664
Q ss_pred CcccCCCeeEEEeCCCCCC-----CCceEEeeecCCCcEEEEEecC--CcEEEccCCCCC-----CCCCCCCCCHHHHHH
Q 013476 309 PMICPSSGVHIVLPDYYSP-----EGMGLIVPKTKDGRVVFMLPWL--GRTVAGTTDSDT-----VITLLPEPHEDEIQF 376 (442)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~--g~~~~g~~~~~~-----~~~~~~~~~~~~~~~ 376 (442)
++.|.+++...+...... ...+.++....+ ..+|++|.. ++++++...... ....+..+++..++.
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (380)
T TIGR01377 212 -PLQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLN-PHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQI 289 (380)
T ss_pred -CceEEEEEEEEEecCCccccCccCCCCEEEEeCCC-CceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHH
Confidence 677888876655432211 122333331222 247888863 245555322110 011123466778899
Q ss_pred HHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccccc
Q 013476 377 ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWT 438 (442)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~~ 438 (442)
+.+.+.+++ |.+.... .+.|.|+|++||| ..|+|...+ +|+++++|..+.
T Consensus 290 l~~~~~~~~-P~l~~~~-~~~~~~~~~~t~D----------~~piIg~~p~~~~l~va~G~~g~ 341 (380)
T TIGR01377 290 LRKFVRDHL-PGLNGEP-KKGEVCMYTNTPD----------EHFVIDLHPKYDNVVIGAGFSGH 341 (380)
T ss_pred HHHHHHHHC-CCCCCCc-ceeeEEEeccCCC----------CCeeeecCCCCCCEEEEecCCcc
Confidence 999999999 8887544 5679999999999 699999864 899999986543
No 18
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.96 E-value=2.2e-28 Score=249.93 Aligned_cols=309 Identities=19% Similarity=0.144 Sum_probs=195.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.+||+|||||++|+++|++|+++|++|+|||+.. ++.++|+++.|++++...........+.........+.+.+...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~- 338 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPA- 338 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4899999999999999999999999999999985 78899999999887643211110000000000011111111110
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (442)
......+ .....+....+..+.. ...+.+.........++++.++....++.. ....+.+.+.++++
T Consensus 339 ~~~~~~~-~~~G~l~~a~~~~~~~------~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~------~~~~g~~~p~~G~v 405 (662)
T PRK01747 339 AGVAFDH-DWCGVLQLAWDEKSAE------KIAKMLALGLPAELARALDAEEAEELAGLP------VPCGGIFYPQGGWL 405 (662)
T ss_pred cCCCCCC-CCCceEEeecCchHHH------HHHHHHhccCchHhhhhCCHHHHHHHhCCC------CCCCcEEeCCCCee
Confidence 0000000 0001111111111111 111222111111125678888887776532 22344555678899
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~ 309 (442)
+|..++.+|.+.+++ |++++++++|+++..+++ .+. |.. .++ ..+.|+.||+|+|.++..+.... ..
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~--~~~-v~t---~~g--~~~~ad~VV~A~G~~s~~l~~~~----~l 472 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTIHFGHEVARLEREDD--GWQ-LDF---AGG--TLASAPVVVLANGHDAARFAQTA----HL 472 (662)
T ss_pred CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC--EEE-EEE---CCC--cEEECCEEEECCCCCcccccccc----CC
Confidence 999999999999999 999999999999988764 443 333 222 35789999999999998877642 34
Q ss_pred cccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEe-c-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCC
Q 013476 310 MICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLP-W-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNV 387 (442)
Q Consensus 310 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (442)
++.|+||+++.++..........++. .+ .|++| . +|.+++|++.+. ...+..++++..+++++.+.+++ |
T Consensus 473 pl~p~RGqv~~~~~~~~~~~~~~~~~--~~---~Y~~p~~~~g~~~iGat~~~--~~~~~~~~~~~~~~~~~~l~~~~-P 544 (662)
T PRK01747 473 PLYSVRGQVSHLPTTPALSALKQVLC--YD---GYLTPQPANGTHCIGASYDR--DDTDTAFREADHQENLERLAECL-P 544 (662)
T ss_pred CcccccceEEeecCCccccccCceeE--CC---ceeCCCCCCCceEeCcccCC--CCCCCCCCHHHHHHHHHHHHHhC-C
Confidence 68999999888764321111111121 12 47888 4 567889988865 23455677888889999999999 7
Q ss_pred CC-----CCCCeeeeeeeccccccCCCCCCCCCcccceeeEe
Q 013476 388 KV-----RRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE 424 (442)
Q Consensus 388 ~l-----~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~ 424 (442)
.+ ....+.+.|+|+||+||| +.|+|..
T Consensus 545 ~l~~~~~~~~~~~~~~aG~R~~tpD----------~~PiIG~ 576 (662)
T PRK01747 545 QALWAKEVDVSALQGRVGFRCASRD----------RLPMVGN 576 (662)
T ss_pred CchhhhccCccccCceEEEeccCCC----------cccccCC
Confidence 65 456778899999999999 5677765
No 19
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-26 Score=223.78 Aligned_cols=336 Identities=22% Similarity=0.208 Sum_probs=214.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhH-H-hhhccCcchHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE-K-AVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 146 (442)
++++||||||||++|+++||+|+++|.+|+|+|+...+.++|+++.+.+........ . ......... ...|+.+.+.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLS-LALWRELSEE 80 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHH-HHHHHHHHHH
Confidence 356999999999999999999999999999999999888888888777654432211 0 000000011 1122222221
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-ee
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YY 225 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~ 225 (442)
. .....+....... +................+.+. ..... .+.++..+..+..|.+ ..+...++++ +.
T Consensus 81 ~---~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~p~l----~~~~~~~a~~~~~ 149 (387)
T COG0665 81 L---GTGAGLRRRGLLD--LAAREGLKGLAQLERLAAELE-AAGED-AELLDAAEAAELEPAL----GPDFVCGGLFDPT 149 (387)
T ss_pred h---Ccchhcchhhhhh--hhhccccchHHHHHHHHHHHH-hcCCC-ceeCCHHHHHHhCCCC----CcccceeeEecCC
Confidence 1 1110011100000 000000000000001112221 22221 2578888888999988 4454555544 66
Q ss_pred CcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 226 DGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
.+.++|..++..|.+.++++| ..+..++++..+..+ + ++.+|.+. . ..+.|+.||+|+|.|+..+...++
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~---~---g~i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETD---G---GTIEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeC---C---ccEEeCEEEEcCchHHHHHHHhcC
Confidence 889999999999999999999 566679999999886 2 34444442 2 249999999999999999999888
Q ss_pred CCCCCcccCCCeeEEEeCCCCCCCCceEE-eeecCCCcEEEEEec-CCcEEEccCCCCCC-CCCCCCCCHHHHHHHHHHh
Q 013476 305 QNVQPMICPSSGVHIVLPDYYSPEGMGLI-VPKTKDGRVVFMLPW-LGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAI 381 (442)
Q Consensus 305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 381 (442)
....++.|.+++.+.++........... ..........|++|. ++.+++|.+.+... ...+.........++++.+
T Consensus 221 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (387)
T COG0665 221 -ELPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVA 299 (387)
T ss_pred -CCcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHH
Confidence 4445799999998888754322111000 111122334788886 78899999876642 2222222221467899999
Q ss_pred hhhcCCCCCCCCeeeeeeeccccc-cCCCCCCCCCcccceeeEe-c-CCCeEEEecccc
Q 013476 382 SDYLNVKVRRTDVLSAWSGIRPLA-MDPSAKNTESISRDHVVCE-D-FPGLVTITGGKW 437 (442)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~G~r~~t-~D~~~~~~~~~~~~~~i~~-~-~~~~~~~~gg~~ 437 (442)
.+++ |.+....+.+.|+|+||+| || +.|+|.. . .||++.++|-.+
T Consensus 300 ~~~~-P~l~~~~~~~~w~g~~~~t~pd----------~~P~iG~~~~~~~l~~a~G~~~ 347 (387)
T COG0665 300 RALL-PGLADAGIEAAWAGLRPPTTPD----------GLPVIGRAAPLPNLYVATGHGG 347 (387)
T ss_pred HHhC-ccccccccceeeeccccCCCCC----------CCceeCCCCCCCCEEEEecCCC
Confidence 9999 8999888999999999988 99 6889984 4 489999988653
No 20
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.95 E-value=2.2e-25 Score=217.73 Aligned_cols=352 Identities=14% Similarity=0.117 Sum_probs=205.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCcc--CCCCcccchh---hhhHHhhhc-cCcchHHHHHHH
Q 013476 72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGV---RYLEKAVFN-LDYGQLKLVFHA 142 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~--~~~g~~~~~~---~~~~~~~~~-~~~~~~~~~~~~ 142 (442)
+||+|||||++|+++|++|++. |++|+|+||.. ++.++|+ +|.|.+|.+. .|....... ..........+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 6999999999999999999997 99999999975 7778887 5777777665 221110000 000000011111
Q ss_pred HHHHHHHH---HhC------CcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCC-ccee-cCHhhHHhhCCcccc
Q 013476 143 LEERKQVI---RNA------PHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH-LSRY-YSAQESAELFPTLAM 211 (442)
Q Consensus 143 ~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~p~~~~ 211 (442)
+.....++ ... ..+......+.......+..... +.++.+ +..++. ..++ ++.+++.+++|.+..
T Consensus 81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~---~~~~~~-~~~g~~~~~~~~l~~~el~~~eP~l~~ 156 (483)
T TIGR01320 81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLK---KRYEAL-KGHPLFEGMEFSEDPATFAEWLPLMAA 156 (483)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHH---HHHHHH-hcCCCccCceEeCCHHHHHHhCCCccc
Confidence 11111111 110 00011111111222222222211 222332 245552 2454 799999999999821
Q ss_pred ccccCCceeE-EEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEE
Q 013476 212 KAKDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 290 (442)
Q Consensus 212 ~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVl 290 (442)
........++ +.+.++.+||..++.+|.+.++++|++|+++++|+++..++++ .+. |.+.+..+++...+.|++||+
T Consensus 157 ~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~-~v~-v~~~~~~~g~~~~i~A~~VV~ 234 (483)
T TIGR01320 157 GRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG-SWT-VTVKNTRTGGKRTLNTRFVFV 234 (483)
T ss_pred CCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-eEE-EEEeeccCCceEEEECCEEEE
Confidence 0001123344 4566889999999999999999999999999999999986543 322 333321334445799999999
Q ss_pred ccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCCC-CCCCCceEEeeecCCCcEEEEEec------CCcEE--EccCCC
Q 013476 291 AAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDY-YSPEGMGLIVPKTKDGRVVFMLPW------LGRTV--AGTTDS 359 (442)
Q Consensus 291 AtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~------~g~~~--~g~~~~ 359 (442)
|+|+|+..|++++|+.. ...+.|++|+++.++.. ........+++..+.+...|.+|+ +|..+ +|++..
T Consensus 235 AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~ 314 (483)
T TIGR01320 235 GAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAG 314 (483)
T ss_pred CCCcchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCC
Confidence 99999999999999862 45789999999998654 222223445653222222556664 33444 888877
Q ss_pred --CCCC--CC--C--CCCCHHH-------------------------HHHHHHHhhhhcCCCCCCCCeeeeeeecccccc
Q 013476 360 --DTVI--TL--L--PEPHEDE-------------------------IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM 406 (442)
Q Consensus 360 --~~~~--~~--~--~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~ 406 (442)
+.-. .. | ...+... ....++.+++++ |.+...++....+|+|+..-
T Consensus 315 ~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-p~~~~~d~~~~~~GiR~Q~i 393 (483)
T TIGR01320 315 WSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFY-PEAIDSDWELIVAGQRVQVI 393 (483)
T ss_pred cchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCHHHcEEccCceEEEEE
Confidence 3111 11 1 0111000 112345567888 89988888888999999988
Q ss_pred CCCCCC--CCCcccceeeEecCCCeE
Q 013476 407 DPSAKN--TESISRDHVVCEDFPGLV 430 (442)
Q Consensus 407 D~~~~~--~~~~~~~~~i~~~~~~~~ 430 (442)
|.+.+. -.-..++|+|...+..+.
T Consensus 394 ~~~~~~~~g~l~~g~~~i~~~~~~~~ 419 (483)
T TIGR01320 394 KKDPEKGGGVLEFGTTLIADADGSIA 419 (483)
T ss_pred ecCCCCCcCEEecCCeEEECCCCeEE
Confidence 743100 012224667765433333
No 21
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.95 E-value=1.2e-25 Score=213.14 Aligned_cols=308 Identities=23% Similarity=0.283 Sum_probs=201.3
Q ss_pred HHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhh--hHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCccc
Q 013476 88 LDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRY--LEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTP 165 (442)
Q Consensus 88 ~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (442)
++|+++|.+|+||||..++.++|++++|++++.... .......+.....+.+.+..++.......... ......+..
T Consensus 1 ~~La~~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~-~~~~G~l~~ 79 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTG-YHQCGTLVV 79 (337)
T ss_pred ChHHHCCCceEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcC-eEEccEEEE
Confidence 579999999999999988899999999988653311 01111111111111111111111000000111 111111111
Q ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-eeCcccChHHHHHHHHHHHHH
Q 013476 166 CFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMNDSRLNVGLALTAAL 244 (442)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~ 244 (442)
..+........ +..+.. +..+.+ .++++.+++.+.+|.+ .. ...++++ +.++.++|..++..|.+.+++
T Consensus 80 a~~~~~~~~l~---~~~~~~-~~~~~~-~~~l~~~e~~~~~p~l----~~-~~~~g~~~~~~g~v~p~~l~~~l~~~~~~ 149 (337)
T TIGR02352 80 AFDEDDVEHLR---QLADLQ-SATGME-VEWLSGRALRRLEPYL----SG-GIRGAVFYPDDAHVDPRALLKALEKALEK 149 (337)
T ss_pred eCCHHHHHHHH---HHHHHH-HhcCCc-eEEcCHHHHHHhCCCC----Cc-ccceEEEcCCCceEChHHHHHHHHHHHHH
Confidence 11111111111 122222 245554 8999999999999987 43 3445554 568999999999999999999
Q ss_pred cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCC
Q 013476 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDY 324 (442)
Q Consensus 245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~ 324 (442)
+|++++.+++|++|..++ + ++++|... . ..+.||.||+|+|.|+..|.+ .++.|.+++++.++..
T Consensus 150 ~g~~~~~~~~v~~i~~~~-~-~~~~v~~~---~---g~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~ 214 (337)
T TIGR02352 150 LGVEIIEHTEVQHIEIRG-E-KVTAIVTP---S---GDVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAP 214 (337)
T ss_pred cCCEEEccceEEEEEeeC-C-EEEEEEcC---C---CEEECCEEEEcCChhhhhccc-------CCccccCceEEEeecc
Confidence 999999999999999876 4 77777542 2 278999999999999988755 2578999988887543
Q ss_pred CCCC-CceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeecc
Q 013476 325 YSPE-GMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIR 402 (442)
Q Consensus 325 ~~~~-~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r 402 (442)
..+. ..+.... . .....|++|. ++++++|++.... ..+..++++.++.+++.+.+++ |.+...++.+.|+|+|
T Consensus 215 ~~~~~~~~~~~~-~-~~~~~y~~p~~~g~~~iG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~~~g~r 289 (337)
T TIGR02352 215 AVPLLNRPLRAV-V-YGRRVYIVPRRDGRLVVGATMEES--GFDTTPTLGGIKELLRDAYTIL-PALKEARLLETWAGLR 289 (337)
T ss_pred ccccCCcccceE-E-EcCCEEEEEcCCCeEEEEEecccc--CccCCCCHHHHHHHHHHHHHhC-CCcccCcHHHheecCC
Confidence 2111 1111111 1 1224688896 4568999887653 2345677888999999999999 8888889999999999
Q ss_pred ccccCCCCCCCCCcccceeeEecC--CCeEEEeccc
Q 013476 403 PLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGK 436 (442)
Q Consensus 403 ~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~ 436 (442)
|+|+| +.|+|...+ +|+|.++|-.
T Consensus 290 ~~t~D----------~~piig~~~~~~~~~~~~g~~ 315 (337)
T TIGR02352 290 PGTPD----------NLPYIGEHPEDRRLLIATGHY 315 (337)
T ss_pred CCCCC----------CCCEeCccCCCCCEEEEcccc
Confidence 99999 789998753 7888887743
No 22
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.94 E-value=3.6e-24 Score=207.45 Aligned_cols=343 Identities=16% Similarity=0.155 Sum_probs=201.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEec-cCCCCCCcc--CCCCcccchhhhhHHhh-h---ccCcchHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVER-EDFSSGTSS--RSTKLIHGGVRYLEKAV-F---NLDYGQLKLV 139 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk-~~~~~g~s~--~~~g~~~~~~~~~~~~~-~---~~~~~~~~~~ 139 (442)
...+|||||||||+|+++|+.|++. |++|+|+|| ..++.++|+ +|+|.+|.+.-...-.. . .........+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i 83 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI 83 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence 4558999999999999999999998 899999999 668888885 46666665542111000 0 0001100011
Q ss_pred HHHHHHHHHHHHhCC---------cccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCC-Ccceec-CHhhHHhhCCc
Q 013476 140 FHALEERKQVIRNAP---------HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLL-HLSRYY-SAQESAELFPT 208 (442)
Q Consensus 140 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~-~~~~~~~~~p~ 208 (442)
.+.+.....++...+ .+....+.+.......+..+.. +.++.+. ..++ +.++++ +.+++.+++|.
T Consensus 84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~---~r~~~~~-~~~~f~~~~~~~d~~el~~~~P~ 159 (497)
T PRK13339 84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLK---KRYEALK-QHPMFDNIEYTEDIEVMAKWMPL 159 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHH---HHHHHhh-ccCCCCCcEEecCHHHHHHhCCc
Confidence 111111111111111 1111222222222222222221 2233332 4444 347888 79999999999
Q ss_pred cccccccCC-ceeEEEeeCcccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEc-CCCCeEEEEEEEECCCCceEEEEc
Q 013476 209 LAMKAKDRS-LKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKD-EASNRIIGARIRNNLSGKEFDTYA 285 (442)
Q Consensus 209 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~-~~g~~v~gV~~~~~~~g~~~~i~a 285 (442)
+........ ..+.+.+.++.+++..++++|.+.+++. |++++++++|++|.++ +++|.+ .+.+..+++...+.|
T Consensus 160 l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v---~v~~t~~g~~~~i~A 236 (497)
T PRK13339 160 MMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEV---TVKDRNTGEKREQVA 236 (497)
T ss_pred ccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEE---EEEecCCCceEEEEc
Confidence 821001113 3344446677899999999999999754 8999999999999887 544433 332112332236899
Q ss_pred CEEEEccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCCCCCCCC-ceEEeeecCCCcEEEEEecC------Cc--EEE
Q 013476 286 KVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSPEG-MGLIVPKTKDGRVVFMLPWL------GR--TVA 354 (442)
Q Consensus 286 ~~VVlAtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~------g~--~~~ 354 (442)
|.||+|+|+|+..|++++|+.. ...+.|++|+++.++....... ...+++....+...|..|+. |. +.+
T Consensus 237 d~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~ 316 (497)
T PRK13339 237 DYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLF 316 (497)
T ss_pred CEEEECCCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEE
Confidence 9999999999999999999863 2578999999999875221111 12455532222224556542 32 566
Q ss_pred ccCCCCCC--CC-CC-------CCC-C---------------HHH-------HHHHHHHhhhhcCCCCCCCCeeeeeeec
Q 013476 355 GTTDSDTV--IT-LL-------PEP-H---------------EDE-------IQFILDAISDYLNVKVRRTDVLSAWSGI 401 (442)
Q Consensus 355 g~~~~~~~--~~-~~-------~~~-~---------------~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~G~ 401 (442)
|++..... .. .+ ... . ... ....++.+++++ |.+...++....+|+
T Consensus 317 GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~-P~~~~~D~~~~~aGi 395 (497)
T PRK13339 317 GPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFY-PEARAEDWRLYTAGK 395 (497)
T ss_pred CCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHeeEcCCce
Confidence 76654420 00 00 000 0 000 124456677888 899888888889999
Q ss_pred cccccCCCCCCCCCcccceeeE
Q 013476 402 RPLAMDPSAKNTESISRDHVVC 423 (442)
Q Consensus 402 r~~t~D~~~~~~~~~~~~~~i~ 423 (442)
|+..-+. +.+...+|++.
T Consensus 396 R~Q~i~~----~~~~~~dfl~~ 413 (497)
T PRK13339 396 RVQVIKD----TPEHGKGFIQF 413 (497)
T ss_pred EEEEEeC----CCCccCCEEEe
Confidence 9998873 33344577654
No 23
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.94 E-value=8.1e-26 Score=195.90 Aligned_cols=341 Identities=20% Similarity=0.257 Sum_probs=242.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhh-ccCcchHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVF-NLDYGQLKLVFHALE 144 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 144 (442)
...+|+||||||++|++.|.+|.-+ +.+|.|+||.. ++-..|++|+|.+|.|+.|...... .+..+..++.++++.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 4569999999999999999999987 99999999995 7888999999999999988655432 344556667777777
Q ss_pred HHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEe
Q 013476 145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY 224 (442)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 224 (442)
+...-+.....++.. ....+.+.. ........+++++..++++..++.+++|+. ....+.+.+
T Consensus 126 e~~IpyKk~GKLIVA-------t~~~EiprL----d~L~~~g~qN~v~glrmieg~ei~~~EP~c------rgvkAl~sP 188 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVA-------TESEEIPRL----DALMHRGTQNGVPGLRMIEGSEIMEMEPYC------RGVKALLSP 188 (453)
T ss_pred hcCCChhhcceEEEE-------eChhhcchH----HHHHHhhhhcCCCCeeeeccchhhhcChhh------hhhhhhcCC
Confidence 765544444333322 122222211 111112237888899999999999999987 667777788
Q ss_pred eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
..|.+|-..++..+.+..+..|.++..|-+++.+.++.++---+-+++. +++..+++++.||-|+|..+..+..+.|
T Consensus 189 htGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~---ngk~ee~r~~~~vtc~gl~sdr~aa~sg 265 (453)
T KOG2665|consen 189 HTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL---NGKGEEKRTKNVVTCAGLQSDRCAALSG 265 (453)
T ss_pred CcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEe---cCccceeEEeEEEEeccccHhHHHHHhC
Confidence 8999999999999999999999999999999999887643001113343 3456689999999999999999999999
Q ss_pred CCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEE----EEec-CCcEEEccCCCC-------------------
Q 013476 305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVF----MLPW-LGRTVAGTTDSD------------------- 360 (442)
Q Consensus 305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~-~g~~~~g~~~~~------------------- 360 (442)
.+.++.+.|.+|.++.+.........+.++| .++.++-| +.|+ ++.+++|.....
T Consensus 266 c~~dPriVpfrG~ylll~~ek~h~vk~niyP-vpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e 344 (453)
T KOG2665|consen 266 CELDPRIVPFRGEYLLLKPEKLHLVKGNIYP-VPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVE 344 (453)
T ss_pred CCCCCeeeeccchhhhcChHHhccccCceee-CCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhh
Confidence 9988889999998777655433333444555 44444322 3443 445555544221
Q ss_pred -CCCC---------CCCCCCH----HHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEec-
Q 013476 361 -TVIT---------LLPEPHE----DEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED- 425 (442)
Q Consensus 361 -~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~- 425 (442)
.... .+.-.++ .++..-.+.+++++ |++...++.+-.+|+|+.-.|+ +.+.+.||+++-.
T Consensus 345 ~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyi-Pdlk~~di~rGpaGvRaqald~----~gnlv~DFVfd~g~ 419 (453)
T KOG2665|consen 345 WIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYI-PDLKDSDIERGPAGVRAQALDG----DGNLVDDFVFDGGE 419 (453)
T ss_pred heecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhC-ccccccccccCcccccchhccC----CCCCchheEEecCc
Confidence 1000 1111222 22333448899999 9999999999999999999995 4566789999864
Q ss_pred ---CCCeEEEecc
Q 013476 426 ---FPGLVTITGG 435 (442)
Q Consensus 426 ---~~~~~~~~gg 435 (442)
.|+++.+-+.
T Consensus 420 g~~~p~llh~rna 432 (453)
T KOG2665|consen 420 GHLVPRLLHVRNA 432 (453)
T ss_pred cccccceEEecCC
Confidence 3778776543
No 24
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.94 E-value=4.4e-24 Score=187.28 Aligned_cols=334 Identities=14% Similarity=0.113 Sum_probs=194.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC--CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
.+..||+|||||+.|+++||+|+++|.+++|||+.+++. |+|...+.++... |.+..+. ..+.+.++++
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~--Y~e~~Y~-------~m~~ea~e~W 75 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPA--YAEDKYM-------SMVLEAYEKW 75 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechh--hhhHHHH-------HHHHHHHHHH
Confidence 456899999999999999999999999999999997543 3333333333322 1111111 1222223332
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCC-ccccccccCCceeEEEee
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP-TLAMKAKDRSLKGAVVYY 225 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~ 225 (442)
................+........... .+....+ +..++. .+.++.+++.+.+| ... -++...|.....
T Consensus 76 ~~~~~~~g~~~~~~t~~~~~~~~e~~~~----~sv~~~~-k~~~l~-h~~l~seEvrk~fP~~~~---l~d~~~G~~n~~ 146 (399)
T KOG2820|consen 76 RNLPEESGVKLHCGTGLLISGDPERQRL----DSVAANL-KRKGLA-HSVLISEEVRKRFPSNIP---LPDGWQGVVNES 146 (399)
T ss_pred HhChhhhceeecccceeeecCcHHHHHH----HHHHHHH-hhhhhh-hhhhhHHHHHHhCCCCcc---CCcchhhccccc
Confidence 2211111111110000000000000000 0111111 233443 67788999999999 431 235566777788
Q ss_pred CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-h
Q 013476 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-A 303 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~ 303 (442)
+|.+++.+-+.++...+++.|+.|+.+..|..+...+ ++ ..++|.+. +| ..+.||.+|+++|.|.+.|++. +
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~-~~v~V~Tt---~g--s~Y~akkiI~t~GaWi~klL~~~~ 220 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEG-NHVSVQTT---DG--SIYHAKKIIFTVGAWINKLLPTSL 220 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCC-ceeEEEec---cC--CeeecceEEEEecHHHHhhcCccc
Confidence 9999999999999999999999999999999887543 23 44444442 33 3799999999999999999985 4
Q ss_pred CCCCCCcccCCCeeEEEeCCCC------CCCCceEEeeecCCC-cEEEEEec---CCcEEEccC----CCCCCCCCCC--
Q 013476 304 DQNVQPMICPSSGVHIVLPDYY------SPEGMGLIVPKTKDG-RVVFMLPW---LGRTVAGTT----DSDTVITLLP-- 367 (442)
Q Consensus 304 g~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~p~---~g~~~~g~~----~~~~~~~~~~-- 367 (442)
++.. ++.|.+-....+.... ......+.++..++. -+.|.+|. .+.+-+-.. ..+. .+..+
T Consensus 221 ~~~~--Pv~~i~ltvcywk~~~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~-~~~~p~~ 297 (399)
T KOG2820|consen 221 AIGF--PVAPIQLTVCYWKTKKNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPI-DPDGPPK 297 (399)
T ss_pred ccCC--ccceeEeehhhheeecCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCC-CCCCCcc
Confidence 5543 3433332222221110 011122333333444 24555663 222222111 1111 11111
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEeccccccc
Q 013476 368 EPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTY 440 (442)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~gg~~~~~ 440 (442)
.+.+. ..++++++.+-+.|.++...+...-.|++.+||| -+|+|+.++ .++|+.+||.|...
T Consensus 298 ~s~~~-~idl~~~f~~~~~p~l~~~~p~~t~~C~YT~TpD----------~~FviD~~P~~~Nv~Vg~G~SGHGF 361 (399)
T KOG2820|consen 298 RSLPK-AIDLMRRFLRTFGPDLDDRSPINTKMCMYTDTPD----------ANFVIDKHPQYDNVFVGGGGSGHGF 361 (399)
T ss_pred cCcch-HHHHHHHHHHHhCccccCCCcceeeEEEeeCCCC----------cCeeeecCCCcccEEEecCCCCcce
Confidence 22233 4455555554444899988888888999999999 699999875 77999999988653
No 25
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.94 E-value=4.2e-25 Score=208.96 Aligned_cols=324 Identities=23% Similarity=0.284 Sum_probs=221.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
...||||||+|.+|+.+||+||++|.+ ++++|+.....|+++++.|++.. ++..+............ ....+++..
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~-lr~~dv~~qlia~~~~~-l~~~leeEt- 114 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ-LFPSDVELQLIAHTSRV-LYRELEEET- 114 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee-ccCCchhHHHHHHHHHH-HHHHHHHhc-
Confidence 448999999999999999999999999 66667777888899988887754 22211111111111111 111111111
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHH---hccCCCCcceecCHhhHHhhCCccccccccCCceeEEE-e
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLV---AGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-Y 224 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~ 224 (442)
.....++.....++ +.++... ..+..+ ...+|+. .+.+++++..+.+|.+ +.+.+.++++ +
T Consensus 115 --gl~tGwiq~G~~~l-As~~~R~-------de~kR~~S~g~a~g~e-~~lLsPee~~~~~pLL----n~d~v~g~Ly~P 179 (856)
T KOG2844|consen 115 --GLHTGWIQNGGIFL-ASNRQRL-------DEYKRLMSRGKAHGVE-SELLSPEETQELFPLL----NVDDVYGGLYSP 179 (856)
T ss_pred --CCCcceecCCceEE-ecCHHHH-------HHHHHHHHhhhhccce-eeecCHHHHHHhCccc----chhHheeeeecC
Confidence 11111222211111 1111111 112222 1356765 8999999999999999 7788888776 6
Q ss_pred eCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 225 ~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
.+|.+||..++++|+..|++.|+.|+++++|++|....+ +..||++. .+.|+|..||+|||.|+..+-++.|
T Consensus 180 ~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~~gVeT~------~G~iet~~~VNaaGvWAr~Vg~m~g 251 (856)
T KOG2844|consen 180 GDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KFGGVETP------HGSIETECVVNAAGVWAREVGAMAG 251 (856)
T ss_pred CCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Cccceecc------CcceecceEEechhHHHHHhhhhcC
Confidence 799999999999999999999999999999999988775 55577663 3579999999999999999999988
Q ss_pred CCCCCcccCCCeeEEEeCCCCCCCCce-EEeeecCCCcEEEEEecCCcEEEccCCCCCC---------CCCCCCCCHHHH
Q 013476 305 QNVQPMICPSSGVHIVLPDYYSPEGMG-LIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV---------ITLLPEPHEDEI 374 (442)
Q Consensus 305 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~---------~~~~~~~~~~~~ 374 (442)
++ .+++|+...+++......-.... ..++ ..|++ +|++-+.+++..|+.....- .....+++-+..
T Consensus 252 vk--vPL~p~~H~YvvT~~IeGi~s~t~p~ir-D~DgS-vylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F 327 (856)
T KOG2844|consen 252 VK--VPLVPMHHAYVVTSRIEGVSSLTRPNIR-DLDGS-VYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHF 327 (856)
T ss_pred Cc--ccceeeeeeEEEecccCCccCCCcccee-cccce-EEEEecCCceeccccccCceeccccCCccccccccccHhhh
Confidence 65 47899998877776543221111 1222 34553 67777778888887754321 011233666777
Q ss_pred HHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--CCeEEEec
Q 013476 375 QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITG 434 (442)
Q Consensus 375 ~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~~~~~~~g 434 (442)
...++.+...+ |.+++..+...-.|...+||| ..|++.+++ .|+++.+|
T Consensus 328 ~~hlesai~r~-P~l~k~~i~~~v~gpe~ftPD----------~~p~mGe~p~~~gy~v~~G 378 (856)
T KOG2844|consen 328 EPHLEAAIERV-PVLEKAGIKSLVNGPETFTPD----------HLPIMGESPEVRGYWVACG 378 (856)
T ss_pred HHHHHHHHHhC-chhhhcCccceecCccccCCc----------cccccCCCccccceEEeec
Confidence 88888888888 899999999999999999999 567776654 66666554
No 26
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.93 E-value=2.3e-23 Score=203.71 Aligned_cols=354 Identities=14% Similarity=0.111 Sum_probs=203.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCCcc--CCCCcccchhh---hhHHh-hhccCcc-h---
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGVR---YLEKA-VFNLDYG-Q--- 135 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~s~--~~~g~~~~~~~---~~~~~-~~~~~~~-~--- 135 (442)
+..+||||||||++|+++|++|++. |++|+||||.. ++.++|+ +|+|.+|.+.. |.... ...+... .
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~ 82 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI 82 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence 4558999999999999999999985 88999999986 5666766 68887776631 11100 0000000 0
Q ss_pred ---HHHHHHHHHHHHHHHHh---CCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCC-ccee-cCHhhHHhhCC
Q 013476 136 ---LKLVFHALEERKQVIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH-LSRY-YSAQESAELFP 207 (442)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~p 207 (442)
+....+++...... .. ...+......+.......+..... +.++.+. ..++. ..++ ++.+++.+++|
T Consensus 83 ~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~---~~~~~~~-~~g~~~~~~~~~d~~el~e~eP 157 (494)
T PRK05257 83 NEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLK---KRYEALK-ANPLFAGMEFSEDPAQIKEWAP 157 (494)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHH---HHHHHHH-hCCCCCCCEEeCCHHHHHHhCc
Confidence 01111111111110 00 000111111111122222222211 2333332 45542 3556 48899999999
Q ss_pred ccccccccCCceeE-EEeeCcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc
Q 013476 208 TLAMKAKDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA 285 (442)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a 285 (442)
.+......+...++ +.+.++.+|+..+++.|.+.+++.| ++|+++++|++|..++++ .+. |.+.+..+|+..++.|
T Consensus 158 ~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg-~~~-v~~~~~~~G~~~~i~A 235 (494)
T PRK05257 158 LMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG-SWT-VTVKDLKTGEKRTVRA 235 (494)
T ss_pred ccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC-CEE-EEEEEcCCCceEEEEc
Confidence 87210011233344 4566889999999999999999987 899999999999986655 332 3333212343346999
Q ss_pred CEEEEccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCCCCCC-CCceEEeeecCCCcEEEEEec------CCc--EEE
Q 013476 286 KVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW------LGR--TVA 354 (442)
Q Consensus 286 ~~VVlAtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~------~g~--~~~ 354 (442)
++||+|+|+|+..|++++|+.. ..++.|++|+++.++..... .....+++....+...|.+|+ +|. +.+
T Consensus 236 ~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~ 315 (494)
T PRK05257 236 KFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLF 315 (494)
T ss_pred CEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHHHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEE
Confidence 9999999999999999998873 35689999999998754211 111225542221222345554 232 566
Q ss_pred ccCCCCCC--CC-CC-------CCCC--HHH---------------------HHHHHHHhhhhcCCCCCCCCeeeeeeec
Q 013476 355 GTTDSDTV--IT-LL-------PEPH--EDE---------------------IQFILDAISDYLNVKVRRTDVLSAWSGI 401 (442)
Q Consensus 355 g~~~~~~~--~~-~~-------~~~~--~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~~G~ 401 (442)
|++..... .. .+ .... ... ....++.+++++ |.+...++....+|+
T Consensus 316 GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~d~~~~~aG~ 394 (494)
T PRK05257 316 GPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFY-PNAKPEDWELIVAGQ 394 (494)
T ss_pred CCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHceEcCCce
Confidence 76654311 00 00 0000 000 124456677888 889888888888999
Q ss_pred cccccCCCCCCCCCcccceeeEecCCCeE
Q 013476 402 RPLAMDPSAKNTESISRDHVVCEDFPGLV 430 (442)
Q Consensus 402 r~~t~D~~~~~~~~~~~~~~i~~~~~~~~ 430 (442)
|+..-+.+.++-.+...+|.|....++.+
T Consensus 395 R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~ 423 (494)
T PRK05257 395 RVQIIKKDPKKGGVLQFGTEVVSSADGSI 423 (494)
T ss_pred EeEEEccCCCCCCEEECCcEEEecCCCeE
Confidence 99988743211145566753333335544
No 27
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.93 E-value=2.4e-24 Score=207.02 Aligned_cols=306 Identities=17% Similarity=0.143 Sum_probs=192.9
Q ss_pred HHHHHHHCCCeEEEEecc-CCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcc
Q 013476 86 VALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMT 164 (442)
Q Consensus 86 aA~~La~~G~~V~liEk~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (442)
+||+|+++|++|+|||+. .++.++|+++.|++++...........+.........+.+.+.... .....+ .....+.
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~-~~~G~L~ 78 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GFPFDH-EWCGVLQ 78 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCcccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCccc-ccCceEE
Confidence 599999999999999996 4788999999999876432211100000000000111111111110 000011 1111111
Q ss_pred cCCchhhHHHHHHHHHHHHHHhccCCCC--cceecCHhhHHhhCCccccccccCCceeEEEeeCcccChHHHHHHHHHHH
Q 013476 165 PCFDWFEVVYYWVGLKMYDLVAGRHLLH--LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTA 242 (442)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 242 (442)
......+.. .+.+.. +..+++ ..++++.+++...++.. ....+.+.+.++.++|..++..|.+.+
T Consensus 79 ~a~~~~~~~------~l~~~~-~~~~~~~~~~~~l~~~e~~~~~~~~------~~~gal~~~~~g~idp~~~~~~l~~~~ 145 (381)
T TIGR03197 79 LAYDEKEAE------RLQKLL-EQLGFPEELARWVDAEQASQLAGIP------LPYGGLFFPQGGWLSPPQLCRALLAHA 145 (381)
T ss_pred ecCChHHHH------HHHHHH-HhcCCCHHHheeCCHHHHHHhcCCC------CCCCceEeCCCcccChHHHHHHHHhcc
Confidence 111111111 111111 123433 24578888887776432 223344556789999999999999999
Q ss_pred HHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeC
Q 013476 243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLP 322 (442)
Q Consensus 243 ~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~ 322 (442)
++ |++|+++++|.+|..+++ + +.|.. .+| ..++||.||+|+|.|+..|.+.+ ..++.|++|+++.++
T Consensus 146 ~~-G~~i~~~~~V~~i~~~~~--~-~~v~t---~~g--~~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~~~~~~ 212 (381)
T TIGR03197 146 GI-RLTLHFNTEITSLERDGE--G-WQLLD---ANG--EVIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQVSHLP 212 (381)
T ss_pred CC-CcEEEeCCEEEEEEEcCC--e-EEEEe---CCC--CEEEcCEEEEcCCcccccccccc----cCCccccccceeecc
Confidence 99 999999999999988764 4 23433 223 25899999999999998887752 346899999988876
Q ss_pred CCCCCCCceEEeeecCCCcEEEEEec-CCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCC-----CCCeee
Q 013476 323 DYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----RTDVLS 396 (442)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~ 396 (442)
........+..+. .+ .|++|. +|.+++|.+.+.. ..+..++.+.++.+++.+.+++ |.+. +.++.+
T Consensus 213 ~~~~~~~~~~~~~---~~--~y~~p~~~g~~~iG~t~~~~--~~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~ 284 (381)
T TIGR03197 213 ATEALSALKTVLC---YD--GYLTPANNGEHCIGASYDRN--DDDLALREADHAENLERLAECL-PALAWASEVDISALQ 284 (381)
T ss_pred CCCcccccCceEe---CC--ceecccCCCceEeecccCCC--CCCCCcCHHHHHHHHHHHHHhC-cccchhhccCccccC
Confidence 4321111122221 11 478886 4668899877653 2345667778899999999999 7776 678999
Q ss_pred eeeeccccccCCCCCCCCCcccceeeEec---------------------------CCCeEEEecccc
Q 013476 397 AWSGIRPLAMDPSAKNTESISRDHVVCED---------------------------FPGLVTITGGKW 437 (442)
Q Consensus 397 ~~~G~r~~t~D~~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~gg~~ 437 (442)
.|+|+||+||| +.|+|... .+|+++++|-.+
T Consensus 285 ~~~G~r~~t~D----------~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g 342 (381)
T TIGR03197 285 GRVGVRCASPD----------HLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGS 342 (381)
T ss_pred ceEEEeccCCC----------cCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccc
Confidence 99999999999 57777654 478999988543
No 28
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.93 E-value=1.4e-23 Score=204.19 Aligned_cols=316 Identities=16% Similarity=0.194 Sum_probs=187.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-C-CeEEEEeccC-CCCCCc--cCCCCcccchhhhhHHhhhccCcchHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR-G-LRVGLVERED-FSSGTS--SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHAL 143 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~-G-~~V~liEk~~-~~~g~s--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (442)
+..+||||||||++|+++|++|++. + .+|+||||.. ++.++| .++++.+|.+..... ..+.......+..
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~-----y~~~kA~~~~~~~ 117 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETN-----YTLEKARKVKRQA 117 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhc-----CCHHHHHHHHHHH
Confidence 4569999999999999999999996 3 6999999985 555455 456666665532110 0111111111111
Q ss_pred HHHHHHHHhCCc-----ccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc---c
Q 013476 144 EERKQVIRNAPH-----LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK---D 215 (442)
Q Consensus 144 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~---~ 215 (442)
.....+...... .......+.......+..... +.++.+. ..+. ..++++.+++.+++|.+..... .
T Consensus 118 ~~~~~~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~---~~~~~~~-~~~~-~~e~ld~~el~e~eP~v~~~~~~~~~ 192 (497)
T PTZ00383 118 DMLRNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLE---KRYPVFK-ELFP-SMQLLDKKEIHRVEPRVVLKNNHTLR 192 (497)
T ss_pred HHHHHHHHHhcccccccceeeCCEEEEEECHHHHHHHH---HHHHHHH-ccCC-CeEEECHHHHHHhCcccccCcccccc
Confidence 111111111110 111111111122222222221 2233332 3333 4899999999999998721000 0
Q ss_pred CCceeEEE-eeC-cccChHHHHHHHHHHHHH----cC--ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCE
Q 013476 216 RSLKGAVV-YYD-GQMNDSRLNVGLALTAAL----AG--AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 287 (442)
Q Consensus 216 ~~~~~~~~-~~~-~~~~~~~l~~~l~~~~~~----~G--v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~ 287 (442)
+...++.+ +.+ +.+|+..++..|.+.+++ +| ++|+++++|++|.++++ .++.|.+. . ..+.||.
T Consensus 193 ~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--~~~~V~T~---~---G~i~A~~ 264 (497)
T PTZ00383 193 EEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND--SLYKIHTN---R---GEIRARF 264 (497)
T ss_pred ccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--CeEEEEEC---C---CEEEeCE
Confidence 12334444 545 579999999999999999 77 78999999999998753 44445442 2 2699999
Q ss_pred EEEccCCChHHHhhhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcE----EEEEec---CCcEEEccCCCC
Q 013476 288 VVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRV----VFMLPW---LGRTVAGTTDSD 360 (442)
Q Consensus 288 VVlAtG~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~---~g~~~~g~~~~~ 360 (442)
||+|+|+|+..|++++|+.....+.|++|.++.++. .....+++.. +... +...|+ ++.+++|++..+
T Consensus 265 VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~~~----~~~~kVY~v~-~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~ 339 (497)
T PTZ00383 265 VVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFSGN----ILNGKVYTVQ-NPALPFAAVHGDPDIIAKGKTRFGPTALP 339 (497)
T ss_pred EEECcChhHHHHHHHhCCCCCCCEEecCceEEEcCh----hhcCceecCC-CCCCCCcCccCCCccCCCCeEEEccCccc
Confidence 999999999999999998777889999998877753 1222333311 1111 111122 456778888654
Q ss_pred CC--CCC------------CCCC-----------CHHHH----------------HHHHHHhhhhcCCCCCCCCeeee--
Q 013476 361 TV--ITL------------LPEP-----------HEDEI----------------QFILDAISDYLNVKVRRTDVLSA-- 397 (442)
Q Consensus 361 ~~--~~~------------~~~~-----------~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~-- 397 (442)
.. ..+ .... ..... +.+++.+++++ |.+...++...
T Consensus 340 ~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~-P~~~~~d~~~~~~ 418 (497)
T PTZ00383 340 LPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIV-PSLTRKDLRYCVG 418 (497)
T ss_pred chHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhC-CCCCHHHeeeccC
Confidence 21 000 0111 01111 23345566888 88887787763
Q ss_pred eeeccccccCC
Q 013476 398 WSGIRPLAMDP 408 (442)
Q Consensus 398 ~~G~r~~t~D~ 408 (442)
+.|+|+..-|.
T Consensus 419 ~~GvR~Q~i~~ 429 (497)
T PTZ00383 419 YGGVRPQLIDK 429 (497)
T ss_pred CCceEEEEEEC
Confidence 56999999874
No 29
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=175.36 Aligned_cols=337 Identities=21% Similarity=0.208 Sum_probs=209.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATR----GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE 144 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (442)
..|||||||||..|+++|++|.++ |++|+|+|+.+ ....++.-+.|.+.-.+...+ +....- +..+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpE----nIqmSL--F~a~Flr 158 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPE----NIQMSL--FTAEFLR 158 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccch----hhhhhh--HHHHHHH
Confidence 469999999999999999999874 79999999997 444444444433322221111 111111 1223343
Q ss_pred HHHHHHHh----CCcccc-cCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCce
Q 013476 145 ERKQVIRN----APHLSN-ALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK 219 (442)
Q Consensus 145 ~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 219 (442)
.....+.. ...+.. ....+..+ ...+...... ...+.++.|.. .+.++++++..++|++ +.+...
T Consensus 159 ~a~ehl~~~d~~~vdl~f~P~GyL~LA-~ee~ae~m~s----~~kvQ~e~GAk-~eLls~d~Lt~rfPwl----ntegVa 228 (509)
T KOG2853|consen 159 NAREHLGILDSEQVDLNFFPTGYLRLA-SEEEAEMMRS----NSKVQNELGAK-VELLSPDELTKRFPWL----NTEGVA 228 (509)
T ss_pred HHHHhhccccCCCCCcccCCCceEEEc-chhhHHHHHH----hHHHHHhhcch-hcccCHHHHhhhCCcc----ccccee
Confidence 33332222 111111 00001111 1111111111 11222345654 7899999999999999 666554
Q ss_pred eE-EE-eeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEc---------CCC------CeEEEEEEEECCCCceEE
Q 013476 220 GA-VV-YYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD---------EAS------NRIIGARIRNNLSGKEFD 282 (442)
Q Consensus 220 ~~-~~-~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~---------~~g------~~v~gV~~~~~~~g~~~~ 282 (442)
-+ +. ..+|++||..++..+.+.+...|+.+. +-+|+.++.+ ++| .++.+|.++- .++..+.
T Consensus 229 La~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m-~d~~~r~ 306 (509)
T KOG2853|consen 229 LASLGVEKEGWFDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRM-NDALARP 306 (509)
T ss_pred eeecccccccccCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEec-CchhcCc
Confidence 33 32 458999999999999999999999985 5678887765 222 1456666663 4555678
Q ss_pred EEcCEEEEccCCChHHHhhhhCCC-------CCCcccCCCeeEEEeCCCCCC-CCceEEeeecCCCcEEEEEec--CCcE
Q 013476 283 TYAKVVVNAAGPFCDSVRKLADQN-------VQPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW--LGRT 352 (442)
Q Consensus 283 i~a~~VVlAtG~~s~~l~~~~g~~-------~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~--~g~~ 352 (442)
+++..+|+|+|+||.+++++.|+. ++.|+.|.|.+++++..+..| ...++++. ...+|++.. .+.+
T Consensus 307 vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~iD----psG~f~Rrdglg~nf 382 (509)
T KOG2853|consen 307 VKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTID----PSGVFFRRDGLGGNF 382 (509)
T ss_pred eeEEEEEeccCccHHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCCCCCCceeEC----CCccEEEecCCCCce
Confidence 999999999999999999998763 356789999888777654444 45555552 334777774 3456
Q ss_pred EEccCCCCCCCC--CCCCCCHHH-HHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecC--C
Q 013476 353 VAGTTDSDTVIT--LLPEPHEDE-IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--P 427 (442)
Q Consensus 353 ~~g~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~--~ 427 (442)
+.|-+....+.+ .+...+.+. .+.+...+..-+ |.++.+++...|+|++..-. +..+.+|..|| .
T Consensus 383 l~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRV-P~fetakVqsaWaGyyD~Nt---------fD~ngViG~HP~y~ 452 (509)
T KOG2853|consen 383 LCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRV-PAFETAKVQSAWAGYYDHNT---------FDDNGVIGEHPLYT 452 (509)
T ss_pred ecccCCccccCCCccccccChHHHHhhhhHHHHhcc-cccceeeeeehhcccccccc---------cccCCcccCCccee
Confidence 665442211111 122333333 345666666666 88999999999999997632 22678888875 7
Q ss_pred CeEEEeccccc
Q 013476 428 GLVTITGGKWT 438 (442)
Q Consensus 428 ~~~~~~gg~~~ 438 (442)
+++.++|=.+-
T Consensus 453 Nly~atGFsgh 463 (509)
T KOG2853|consen 453 NLYMATGFSGH 463 (509)
T ss_pred eeeeeeccccc
Confidence 78888774443
No 30
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.84 E-value=2.4e-19 Score=177.52 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=115.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCccc-chhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
.++||||||+|++|++||++|+++|++|+||||....++++..++|.+. .+..+....... ...+.+++.+.....
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~---d~~~~~~~~~~~~~~ 136 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIA---DSNDKFYEETLKGGG 136 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCC---CCHHHHHHHHHHhcC
Confidence 4699999999999999999999999999999999866666655544432 222222111111 111111111111000
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
. .........+........+|+. ..|++ +..+.. ... ......+.+.++.
T Consensus 137 ------~---------~~d~~l~~~~~~~s~~~i~wl~-~~Gv~-~~~~~~------~~g-------~~~~r~~~p~~g~ 186 (506)
T PRK06481 137 ------G---------TNDKALLRYFVDNSASAIDWLD-SMGIK-LDNLTI------TGG-------MSEKRTHRPHDGS 186 (506)
T ss_pred ------C---------CCCHHHHHHHHhccHHHHHHHH-HcCce-Eeeccc------CCC-------CCCCceeccCCCC
Confidence 0 0001111122223335566765 45554 221100 000 0011112222333
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
.....++..|.+.+++.|++++++++|++|+.++ | +|+||+++. .+++...+.||.||+|+|+|+.+
T Consensus 187 ~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g-~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 187 AVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD-G-KVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-C-EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence 4445688899999999999999999999998765 6 999999875 34455679999999999998753
No 31
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.82 E-value=1.2e-18 Score=150.77 Aligned_cols=284 Identities=15% Similarity=0.099 Sum_probs=177.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-------CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRG-------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHA 142 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G-------~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (442)
+..+|+|||+|+.||++|+.+.+.+ .+|.|++-.....-+|....|++.+....-.. . ....++....
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~--~---~~~~~w~k~t 76 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTP--Q---EINRQWGKDT 76 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCc--H---HHHHHHHHHH
Confidence 3479999999999999998888854 68999977665556666667766544211000 0 0011121222
Q ss_pred HHHHHHHHH--hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCcee
Q 013476 143 LEERKQVIR--NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKG 220 (442)
Q Consensus 143 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 220 (442)
+.....+.. ..+..--. +.+....++..........+..+ +..++.++..++. .+|. ....
T Consensus 77 f~~l~~l~rs~~a~~aGV~---l~sg~~ls~~e~~~~~~~~w~di-----V~~fr~l~e~EL~-~f~~--------~~~~ 139 (342)
T KOG3923|consen 77 FNYLAHLARSEEAGEAGVC---LVSGHILSDSESLDDQQRSWGDI-----VYGFRDLTERELL-GFPD--------YSTY 139 (342)
T ss_pred HHHHHHHhccccccccceE---EeeeeeeccCCCchhhhhhHHhh-----hhhhhcCCHHHhc-CCCC--------cccc
Confidence 222111111 11100000 00000000000000000111111 1125666666664 3332 2233
Q ss_pred EEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476 221 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300 (442)
Q Consensus 221 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~ 300 (442)
+..+.....++..++..|.+.+.++|+++. ..+|.+|+.-. .-.+|.||+|||.++..|.
T Consensus 140 G~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~-~r~v~~l~E~~-------------------~~~~DVivNCtGL~a~~L~ 199 (342)
T KOG3923|consen 140 GIHFTTYLSEGPKYLPYLKKRLTENGVEFV-QRRVESLEEVA-------------------RPEYDVIVNCTGLGAGKLA 199 (342)
T ss_pred ceeEEEeeccchhhhHHHHHHHHhcCcEEE-EeeeccHHHhc-------------------cCCCcEEEECCcccccccc
Confidence 455556667778999999999999999985 45565553211 1257899999999998776
Q ss_pred hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHH
Q 013476 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDA 380 (442)
Q Consensus 301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
. +..++|.||+++.++. |+....++. |....|++|-.+++.+|++.++ ...+.+.+++...+|++.
T Consensus 200 g------Dd~~yPiRGqVl~V~A---pWvkhf~~~---D~~~ty~iP~~~~V~lGg~~Q~--g~w~~ei~~~D~~dIl~r 265 (342)
T KOG3923|consen 200 G------DDDLYPIRGQVLKVDA---PWVKHFIYR---DFSRTYIIPGTESVTLGGTKQE--GNWNLEITDEDRRDILER 265 (342)
T ss_pred C------CcceeeccceEEEeeC---CceeEEEEe---cCCccEEecCCceEEEcccccc--CcccCcCChhhHHHHHHH
Confidence 5 2349999999998864 455556664 2222699999999999999887 445688899999999999
Q ss_pred hhhhcCCCCCCCCeeeeeeeccccccCCCC
Q 013476 381 ISDYLNVKVRRTDVLSAWSGIRPLAMDPSA 410 (442)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~ 410 (442)
..++. |.+...++.+.|+|+||..+--++
T Consensus 266 c~aL~-P~l~~a~ii~E~vGlRP~Rk~vRl 294 (342)
T KOG3923|consen 266 CCALE-PSLRHAEIIREWVGLRPGRKQVRL 294 (342)
T ss_pred HHHhC-cccccceehhhhhcccCCCCceee
Confidence 99999 999999999999999999987554
No 32
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.81 E-value=2.9e-17 Score=152.38 Aligned_cols=248 Identities=16% Similarity=0.161 Sum_probs=159.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC-CCCCC--ccCCCCcccchhh---hhHH-hhhccCcc------
Q 013476 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGT--SSRSTKLIHGGVR---YLEK-AVFNLDYG------ 134 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~-~~~g~--s~~~~g~~~~~~~---~~~~-~~~~~~~~------ 134 (442)
.++|||+|||||+|.+.++.|++. .++|.|+||.+ ++..+ ..+|.|..|.+.. |-.. .-...+..
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 469999999999999999999986 78999999986 44333 3566777776542 2111 00001111
Q ss_pred -hHHHHHHHHHHHHHH--HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceec-CHhhHHhhCCccc
Q 013476 135 -QLKLVFHALEERKQV--IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLA 210 (442)
Q Consensus 135 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~ 210 (442)
+++..++++...... ......++...+.+.-.....+..+.. +.++.+.+..-...+++. +.+++.++.|.+.
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLk---kR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm 158 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLK---KRYEALKEHPLFPGMEFSEDPEQIAEWAPLVM 158 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHH---HHHHHHhcCCCCCCcEEccCHHHHHhhCCeec
Confidence 111112222211100 000112333333333333334444443 445555433344556666 5788889999874
Q ss_pred cccccCC-ceeEEEeeCcccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCC-CeEEEEEEEECCCCceEEEEcCE
Q 013476 211 MKAKDRS-LKGAVVYYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEAS-NRIIGARIRNNLSGKEFDTYAKV 287 (442)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g-~~v~gV~~~~~~~g~~~~i~a~~ 287 (442)
....... ........+..+|-..+.+.|.+.+++. |++++++++|++|.+.++| |.| .+.+..+++...++||.
T Consensus 159 ~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v---~~~~~~~~~~~~v~a~F 235 (488)
T PF06039_consen 159 EGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEV---KVKDLKTGEKREVRAKF 235 (488)
T ss_pred CCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEE---EEEecCCCCeEEEECCE
Confidence 3322222 2333333455688899999999999988 9999999999999998877 655 55554677788999999
Q ss_pred EEEccCCChHHHhhhhCCCC--CCcccCCCeeEEEeCC
Q 013476 288 VVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPD 323 (442)
Q Consensus 288 VVlAtG~~s~~l~~~~g~~~--~~~~~~~~g~~~~~~~ 323 (442)
|++.+|+++-.|++..|++. .....|+.|+.++.+.
T Consensus 236 VfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n 273 (488)
T PF06039_consen 236 VFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKN 273 (488)
T ss_pred EEECCchHhHHHHHHcCChhhcccCCCcccceEEecCC
Confidence 99999999999999999842 3456899999888764
No 33
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.79 E-value=4.4e-18 Score=146.36 Aligned_cols=314 Identities=15% Similarity=0.125 Sum_probs=181.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC------CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476 71 PLDILVIGGGATGCGVALDAATRG------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE 144 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G------~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (442)
...|+|||||+.|+++||+|++.+ ..|+|+|+..+++++|+..+|++. .+ ........+..-++++..+.-.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa-~w-c~~s~~~~La~lsfkLh~~Lsd 87 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA-KW-CQPSIIQPLATLSFKLHEELSD 87 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhH-hh-hCCcccchhhHHHHHHHHHHHH
Confidence 468999999999999999999987 789999999999999999998875 11 1111111222222222222111
Q ss_pred HHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEe
Q 013476 145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY 224 (442)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 224 (442)
+.....+. -.+.+....-..+|.. +. - .+.+ ...+|+.++...... .+ +-..
T Consensus 88 eydGvnnw---gYRaltTws~ka~~en----------~~-p-~k~p-egldWi~~e~v~~~s-si-----------G~t~ 139 (380)
T KOG2852|consen 88 EYDGVNNW---GYRALTTWSCKADWEN----------TN-P-AKVP-EGLDWIQRERVQKCS-SI-----------GSTN 139 (380)
T ss_pred hhcCcccc---cceeeeEEEEEeeccc----------CC-c-ccCC-cchhhhhhHHhhhhe-ec-----------cCCC
Confidence 11110000 0011100000000000 00 0 0000 012333332222111 00 1123
Q ss_pred eCcccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 225 YDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 225 ~~~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
..++++|..|++.++..+++.| |+++++ +|.++..+ ++ |+.+|..+. ..+.........+|+++|.|+..|+..+
T Consensus 140 ttaqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dE-k~-r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp~~ 215 (380)
T KOG2852|consen 140 TTAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDE-KH-RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLPFT 215 (380)
T ss_pred ccceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecc-cc-cccccchhh-hcCceEEeeeeEEEEecCCCchhhcccc
Confidence 4678999999999999999885 999876 57777633 35 887776542 2233456778999999999999998865
Q ss_pred CCCCCCcccCCCeeEEEeCCCCCCCCceEEee--ecCCC-----cEEEEEecCCcEEEccCCCCCC---CCCCCCCCHHH
Q 013476 304 DQNVQPMICPSSGVHIVLPDYYSPEGMGLIVP--KTKDG-----RVVFMLPWLGRTVAGTTDSDTV---ITLLPEPHEDE 373 (442)
Q Consensus 304 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~p~~g~~~~g~~~~~~~---~~~~~~~~~~~ 373 (442)
++ ...+-..+.++....+-....++. ...++ ...|.++....++.|.++.... ..++....++.
T Consensus 216 rI------sglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npek 289 (380)
T KOG2852|consen 216 RI------SGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEK 289 (380)
T ss_pred cc------ceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHH
Confidence 33 222223344443333211111110 01222 1245555545667777765532 23344567777
Q ss_pred HHHHHHHhhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEec
Q 013476 374 IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITG 434 (442)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~g 434 (442)
+.++.+.+..+. +.+.+..+...-+|+-|.+.+. +-|+|...+-|+++++|
T Consensus 290 i~~Lk~~a~~v~-s~l~ks~v~~~qacfLP~sn~t---------g~PvIget~sg~yVaag 340 (380)
T KOG2852|consen 290 IIELKEMADLVS-SELTKSNVLDAQACFLPTSNIT---------GIPVIGETKSGVYVAAG 340 (380)
T ss_pred HHHHHHHHHHhh-hhhccchhhhhhhccccccCCC---------CCceEeecCCceEEeec
Confidence 777777666665 6677777777788999999883 68999988789998887
No 34
>PRK07121 hypothetical protein; Validated
Probab=99.79 E-value=4.4e-18 Score=168.65 Aligned_cols=205 Identities=23% Similarity=0.234 Sum_probs=119.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccc--hhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG--GVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
+.++||||||+|++|++||++|+++|++|+||||....++++..++|.+.. +...+....... +.+.+.+.+...
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d---~~~~~~~~~~~~ 94 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFED---SPENMYAYLRVA 94 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCC---CHHHHHHHHHHH
Confidence 456999999999999999999999999999999998777777777766532 333332221111 122222222211
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccc----cc---------c
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLA----MK---------A 213 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~----~~---------~ 213 (442)
... . ........+...+.+..+|+. ..|++........ ...+|.-. .. .
T Consensus 95 ~~~------~---------~d~~l~~~~~~~s~~~i~wl~-~~Gv~f~~~~~~~--~~~~p~~~~~~~~~g~~~~~~~~~ 156 (492)
T PRK07121 95 VGP------G---------VDEEKLRRYCEGSVEHFDWLE-GLGVPFERSFFPE--KTSYPPNDEGLYYSGNEKAWPFAE 156 (492)
T ss_pred hCC------C---------CCHHHHHHHHHccHHHHHHHH-HcCcEEEeccCCC--cccCCCCCcccccchhhcchhhhh
Confidence 100 0 001111222333345667775 4555411100000 00011000 00 0
Q ss_pred ccCCceeEEEee-Cccc-ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEE
Q 013476 214 KDRSLKGAVVYY-DGQM-NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVN 290 (442)
Q Consensus 214 ~~~~~~~~~~~~-~~~~-~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVl 290 (442)
............ .+.. ....++..|.+.+++.|++|++++++++|+.+++| +|+||+++. +++...++| |.||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~--~~~~~~i~a~k~VVl 233 (492)
T PRK07121 157 IAKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG-RVVGVEARR--YGETVAIRARKGVVL 233 (492)
T ss_pred ccCCcccceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC-CEEEEEEEe--CCcEEEEEeCCEEEE
Confidence 000000011111 1111 34678889999999999999999999999987657 999999864 455568999 99999
Q ss_pred ccCCChH
Q 013476 291 AAGPFCD 297 (442)
Q Consensus 291 AtG~~s~ 297 (442)
|||+|+.
T Consensus 234 AtGg~~~ 240 (492)
T PRK07121 234 AAGGFAM 240 (492)
T ss_pred CCCCcCc
Confidence 9999874
No 35
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.75 E-value=4.6e-17 Score=164.66 Aligned_cols=216 Identities=18% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCccCCCChHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHH
Q 013476 48 DSKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEK 126 (442)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~ 126 (442)
.++|....+...+.++. ++.++||||||+|++||+||+.|++.|++|+||||.. ++.+++..+.|.+.......
T Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~-- 89 (640)
T PRK07573 15 EEKWDRYKFHLKLVNPA---NKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQ-- 89 (640)
T ss_pred hhhhhhccccccccCCc---cccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhcc--
Confidence 46787887777766666 6778999999999999999999999999999999975 44344444433332111110
Q ss_pred hhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhC
Q 013476 127 AVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELF 206 (442)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 206 (442)
. ..++...+.+....... .+ +.......+...+.+..+|+. ..|++.....+.......+
T Consensus 90 ---~-~~Ds~~~~~~d~~~~g~------~~---------~d~~lv~~l~~~s~~~i~wL~-~~GV~f~~~~~g~~~~~~~ 149 (640)
T PRK07573 90 ---N-DGDSVYRLFYDTVKGGD------FR---------AREANVYRLAEVSVNIIDQCV-AQGVPFAREYGGLLANRSF 149 (640)
T ss_pred ---c-cCCCHHHHHHHHHHhcC------CC---------CCHHHHHHHHHHHHHHHHHHH-hcCCccccCCCCceecccc
Confidence 0 01111111111111000 00 001111122333446677775 5676522111100000000
Q ss_pred CccccccccCCceeEEEeeC--cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEE
Q 013476 207 PTLAMKAKDRSLKGAVVYYD--GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTY 284 (442)
Q Consensus 207 p~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~ 284 (442)
.. ......++..+ |..-...+...|.+.+++.|++|++++.+++|+.++ | +|+||.+.+..++....+.
T Consensus 150 gg-------hs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g-~V~GV~~~~~~~g~~~~i~ 220 (640)
T PRK07573 150 GG-------AQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVD-G-RARGIVARNLVTGEIERHT 220 (640)
T ss_pred CC-------cccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeC-C-EEEEEEEEECCCCcEEEEE
Confidence 00 01111111111 111012233566667888899999999999999876 6 9999999763466666899
Q ss_pred cCEEEEccCCChH
Q 013476 285 AKVVVNAAGPFCD 297 (442)
Q Consensus 285 a~~VVlAtG~~s~ 297 (442)
||.||+|||+|+.
T Consensus 221 AkaVVLATGG~g~ 233 (640)
T PRK07573 221 ADAVVLATGGYGN 233 (640)
T ss_pred CCEEEECCCCccc
Confidence 9999999999885
No 36
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.74 E-value=1.6e-16 Score=155.77 Aligned_cols=191 Identities=18% Similarity=0.169 Sum_probs=113.4
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CeEEEEeccCCCCCCccCCCCcccch-hhhhHHhhhccCcchHHHHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSGTSSRSTKLIHGG-VRYLEKAVFNLDYGQLKLVFHALEERKQVI 150 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~~~~g~s~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (442)
||||||+|++|++||++|+++| ++|+||||....++.|..+++.+... .......... ...+.+.+.+.....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-- 75 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIE---DSPELFIKDTLKGGR-- 75 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCC---CCHHHHHHHHHHhcC--
Confidence 8999999999999999999999 99999999987777777766655332 2221111111 111122111111000
Q ss_pred HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccC
Q 013476 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (442)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 230 (442)
.. ........+........+|+. .++. ++... . ..+ ..........+..+...
T Consensus 76 ----~~---------~~~~l~~~~~~~~~~~i~wl~--~~~~-~~~~~---~--~~~------~~~~~~~~~~~~~g~~~ 128 (439)
T TIGR01813 76 ----GI---------NDPELVRILAEESADAVDWLQ--DGVG-ARLDD---L--IQL------GGHSVPRAHRPTGGAGS 128 (439)
T ss_pred ----CC---------CCHHHHHHHHhccHHHHHHHH--hCCC-eeecc---c--ccc------CCcCCCccccCCCCCCC
Confidence 00 001111111222224455654 2322 11100 0 000 00001111122233445
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...++..|.+.+++.|++|+++++|++|+.++++ +|+||++.+ .+++...+.+|.||+|||+++.
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQG-TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCC-cEEEEEEEe-CCCeEEEEecceEEEecCCCCC
Confidence 5778999999999999999999999999987667 999999875 4444456789999999999886
No 37
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.73 E-value=1.2e-16 Score=155.80 Aligned_cols=200 Identities=23% Similarity=0.207 Sum_probs=110.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchh-hhhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-RYLEKAVFNLDYGQLKLVFHALEERKQVIR 151 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (442)
||||||+|++|++||+.|+++|++|+||||....++++..+.+.+.... ..+..... .++...+.+.+.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~---- 73 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGI---EDSPEEFFQDIMAAG---- 73 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTT---TCHHHHHHHHHHHHT----
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccc---cccccccceeeeccc----
Confidence 8999999999999999999999999999999865556655555443221 11111100 011111111111111
Q ss_pred hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEe--eC---
Q 013476 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY--YD--- 226 (442)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~--- 226 (442)
... ........+.....+..+|+. ..+++.....+. .+..... ........... .+
T Consensus 74 --~~~---------~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~g-----~~~~~~~--g~~~~~~~~~~~~~~~~~ 134 (417)
T PF00890_consen 74 --GGL---------NDPDLVRAFVENSPEAIDWLE-ELGVPFRRDEDG-----PFAPTPF--GGHSPRWRSPPGNPDPPF 134 (417)
T ss_dssp --TT----------S-HHHHHHHHHHHHHHHHHHH-HTT--B-BGTTS-----SBCEEEE--TTESSTEEEEESSTTSSS
T ss_pred --ccc---------cccchhhhhhhcccceehhhh-hhcccccccccc-----ccccccc--CCccccceeeeccccccc
Confidence 000 011122223344456677776 335541110000 0000000 00000100111 01
Q ss_pred -cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476 227 -GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300 (442)
Q Consensus 227 -~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~ 300 (442)
....-..++..|.+.++++|++|++++++++|+.++ + +|+||++++..+++..+|+|+.||+|||+++..++
T Consensus 135 ~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~ 207 (417)
T PF00890_consen 135 GGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITED-G-RVTGVVAENPADGEFVRIKAKAVILATGGFGGELL 207 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-T-EEEEEEEEETTTCEEEEEEESEEEE----BGGHHH
T ss_pred cccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-C-ceeEEEEEECCCCeEEEEeeeEEEeccCccccccc
Confidence 011346788999999999999999999999999986 6 99999999656777788999999999999996333
No 38
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.72 E-value=3.1e-16 Score=157.13 Aligned_cols=196 Identities=15% Similarity=0.066 Sum_probs=114.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++|++||+.+++.|++|+||||....++.+..+.|.+..... ... ...++.+.+.+.......
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~--~~~---~~~Ds~e~~~~d~~~~g~ 77 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIP--GNS---DPNDNPDYMTYDTVKGGD 77 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhcc--ccC---CCcccHHHHHHHHHHhhc
Confidence 466999999999999999999999999999999997555555444433321100 000 001122222111111111
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
. .........+...+.+..+|+. .+|++....-+.......+.. .......+.. .
T Consensus 78 ~---------------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~~--~ 132 (566)
T PRK06452 78 Y---------------LVDQDAAELLSNKSGEIVMLLE-RWGALFNRQPDGRVAVRYFGG-------QTYPRTRFVG--D 132 (566)
T ss_pred c---------------CCCHHHHHHHHHHHHHHHHHHH-HCCCccccCCCCcEeccCCcC-------ccCCeeEecC--C
Confidence 0 0011112233344456677775 567652111110000000000 0111111111 1
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.....++..|.+.+++.|+++++++.+++|+.++ | +|+||++.+..+++...+.||.||+|||+++
T Consensus 133 ~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 133 KTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDN-K-KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 1234678888888888899999999999999875 7 9999999864456556899999999999988
No 39
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.72 E-value=3.3e-16 Score=157.77 Aligned_cols=203 Identities=13% Similarity=0.062 Sum_probs=117.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++||+||++|++.|++|+||||....++++..+.|.+...... ...++.+...........
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~-------~~~Ds~e~~~~d~~~~g~ 82 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGN-------MGEDDWRWHMYDTVKGSD 82 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCC-------CCCCCHHHHHHHHHHhcc
Confidence 3569999999999999999999999999999999876555555554444322110 011222221111111000
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceec-CHhhHHhhCCccccc-cccCCceeEEEeeC
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLAMK-AKDRSLKGAVVYYD 226 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~ 226 (442)
.+ +.......+...+.+..+|+. .+|++ +... +.......+...... ...+......+..+
T Consensus 83 ------~~---------~d~~lv~~l~~~s~~~i~~L~-~~Gv~-f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d 145 (598)
T PRK09078 83 ------WL---------GDQDAIEYMCREAPAAVYELE-HYGVP-FSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAAD 145 (598)
T ss_pred ------CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCc-ceecCCCceeecccCceecccCCCCccceeEecCC
Confidence 00 011112223334446667775 47765 2211 110000000000000 00000011111111
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
..-..++..|.+.+++.|++|++++.+++|+.+++| +|+||++.+..+|+...+.||.||+|||+++..
T Consensus 146 --~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 146 --RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGG-VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred --CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 112467888999898899999999999999987657 999999865456766789999999999999853
No 40
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.71 E-value=4.6e-16 Score=156.98 Aligned_cols=203 Identities=12% Similarity=0.020 Sum_probs=118.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.++||||||+|++||+||+++++.|++|+||||....++++..+.|.+...... ...++.+...........
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~-------~~~Ds~e~~~~D~~~~g~- 99 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGN-------MTEDDWRWHAYDTVKGSD- 99 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecC-------CCCCCHHHHHHHHHHHhC-
Confidence 469999999999999999999999999999999986666555554444322110 001122221111111111
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc-cCCceeEEEeeCcc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK-DRSLKGAVVYYDGQ 228 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~ 228 (442)
. .+.......+...+.+..+|+. .+|++.....+.......+........ ........+. ..
T Consensus 100 -----~---------~~d~~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~--~d 162 (617)
T PTZ00139 100 -----W---------LGDQDAIQYMCREAPQAVLELE-SYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAA--AD 162 (617)
T ss_pred -----C---------CCCHHHHHHHHHHHHHHHHHHH-hcCCceEeCCCCcEeecccCcccccccCCCccceeeec--CC
Confidence 0 0111122233444556777775 577762211111000000000000000 0000001111 01
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
-.-..++..|.+.+++.|+++++++.+++|+.+++| +|.||.+.+..+|+...+.||.||+|||+++..
T Consensus 163 ~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 163 RTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDG-ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCC-EEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 123578889999999999999999999999985447 999999865457777789999999999999753
No 41
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.71 E-value=6.3e-16 Score=154.18 Aligned_cols=206 Identities=22% Similarity=0.250 Sum_probs=118.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccc-hhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG-GVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
+.++||||||+| +|++||+.+++.|++|+||||.+..+|++..++|.+.. +...+...... .+.+.+.+++....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~---ds~e~~~~y~~~~~ 89 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAG---DTLERARTYLDSVV 89 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcc---hhHHHHHHHHHHHh
Confidence 456999999999 89999999999999999999998777777777665543 33333222211 12223333333221
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCH-hhHHhhCCcc---ccccccCCc-----
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSA-QESAELFPTL---AMKAKDRSL----- 218 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~p~~---~~~~~~~~~----- 218 (442)
.. .........+...+.++.+|+++..++. +.+... .......|.- .+...+..+
T Consensus 90 ~~---------------~~~~~li~~~~~~~~~~i~wl~~~~gv~-~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~ 153 (564)
T PRK12845 90 GG---------------SAPAERSAAFLDNGSATVDMLRRTTPMR-FFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVL 153 (564)
T ss_pred CC---------------CCCHHHHHHHHHhhHHHHHHHHhcCCce-EEECCCCCCCCCCCCCCCCCCCcccCCCCChhHh
Confidence 10 0112223344555667788886544432 111100 0000000000 000000000
Q ss_pred -------eeE------EEee------------------------------------C-cccChHHHHHHHHHHHHHcCce
Q 013476 219 -------KGA------VVYY------------------------------------D-GQMNDSRLNVGLALTAALAGAA 248 (442)
Q Consensus 219 -------~~~------~~~~------------------------------------~-~~~~~~~l~~~l~~~~~~~Gv~ 248 (442)
... ..+. . ....-..++..|.+.+++.|++
T Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~ 233 (564)
T PRK12845 154 GEYRPRLRPGVMEVSIPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIP 233 (564)
T ss_pred hhHHHhcCCccccccccccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCE
Confidence 000 0000 0 0011245677888889999999
Q ss_pred EecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHH
Q 013476 249 VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 298 (442)
Q Consensus 249 i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~ 298 (442)
|++++++++|+.++ | +|+||++.. +++...+.| |.||||||+|+.+
T Consensus 234 i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 234 IWTETSLVRLTDDG-G-RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred EEecCEeeEEEecC-C-EEEEEEEEE--CCcEEEEEcCCEEEEecCCcccc
Confidence 99999999999764 7 999998874 444556777 7899999999864
No 42
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.71 E-value=6.4e-16 Score=155.25 Aligned_cols=203 Identities=13% Similarity=0.045 Sum_probs=117.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.++||||||+|++||+||+.|++.|++|+||||....++++..+.|.+...... ...++.+...+........
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~-------~~~Ds~e~~~~D~~~~g~~ 78 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGN-------THEDNWEWHMYDTVKGSDY 78 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCC-------CCCCCHHHHHHHHHHHhCC
Confidence 459999999999999999999999999999999975555554443333211100 0112222222221111110
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (442)
.+.......+...+.+..+|+. .+|++....-+.......+...............++..+ -
T Consensus 79 ---------------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~ 140 (588)
T PRK08958 79 ---------------IGDQDAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD--R 140 (588)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeecccccccccccccccceeEecCC--C
Confidence 0111122233444556777875 577762111110000000000000000000011111111 1
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
.-..++..|.+.+++.|+++++++.+++|+.+++| +|+||.+.+..+++...+.||.||+|||+++..
T Consensus 141 ~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred CHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 22567888888888899999999999999987557 999999865456776789999999999999853
No 43
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.71 E-value=5.8e-16 Score=156.19 Aligned_cols=204 Identities=12% Similarity=0.033 Sum_probs=117.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++||+||++|++.|++|+||||..+.+++|..+.|.+...... ...++.+...+.......
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~-------~~~Ds~e~~~~Dt~~~g~ 120 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-------MTEDDWRWHMYDTVKGSD 120 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCC-------CCCCCHHHHHHHHHHhhC
Confidence 3459999999999999999999999999999999976665555554443321110 011222222211111111
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC-CceeEEEeeCc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-SLKGAVVYYDG 227 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~ 227 (442)
. .+.......+...+.+..+|+. .+|++....-+.......+.....+.... ......+ ..
T Consensus 121 ~---------------~~d~~lv~~l~~~s~~~i~~L~-~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~--~~ 182 (635)
T PLN00128 121 W---------------LGDQDAIQYMCREAPKAVIELE-NYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCAC--AA 182 (635)
T ss_pred C---------------CCCHHHHHHHHHhHHHHHHHHH-hCCCccccCCCCceeeccccccccccCCCcceeeeec--cC
Confidence 0 0111112223334446667775 56765221111000000000000000000 0000000 11
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
...-..++..|.+.+++.|++|+.++.+++|+.+++| +|.||.+.+..+|+...+.||.||+|||+++..
T Consensus 183 d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 183 DRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDG-ACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCC-EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 1123568889999888899999999999999987557 999999876456777789999999999999854
No 44
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.71 E-value=6.9e-16 Score=152.35 Aligned_cols=189 Identities=22% Similarity=0.199 Sum_probs=109.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC--CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF--SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
.++||||||+|++|++||++|+++|.+|+||||... .++++..+.|+....... .... ......+.+++.+....
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 79 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAP-QDVL--VGAYPEEEFWQDLLRVT 79 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCc-hhhc--cccccHHHHHHHHHHhh
Confidence 459999999999999999999999999999999863 456666665532111100 0000 00011111222221111
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 227 (442)
. .. ........+.....+..+|+. ..|++ +........ .+ .. ....+..+
T Consensus 80 ~------~~---------~~~~~~~~~~~~s~~~~~wl~-~~Gv~-~~~~~~~~~---~~--------~~--~~~~~~g~ 129 (466)
T PRK08274 80 G------GR---------TDEALARLLIRESSDCRDWMR-KHGVR-FQPPLSGAL---HV--------AR--TNAFFWGG 129 (466)
T ss_pred C------CC---------CCHHHHHHHHHcCHHHHHHHH-hCCce-EeecCCCcc---cc--------CC--CCeeecCC
Confidence 0 00 000111112222234556664 45554 221110000 00 00 00111111
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...++..|.+.+++.|++++++++|++|+.++ + +|+||++.+ .+++...++||.||+|||++..
T Consensus 130 ---g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g-~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 130 ---GKALVNALYRSAERLGVEIRYDAPVTALELDD-G-RFVGARAGS-AAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred ---HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-C-eEEEEEEEc-cCCceEEEECCEEEECCCCCCC
Confidence 35688889999999999999999999999875 6 999998864 4555668999999999999764
No 45
>PRK12839 hypothetical protein; Provisional
Probab=99.70 E-value=1e-15 Score=153.10 Aligned_cols=69 Identities=26% Similarity=0.300 Sum_probs=55.8
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l 299 (442)
+++..++..|.+.+++.|++|++++++++|+.+++| +|+||++.+ .++....+.+|.||+|||+|+.+.
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g-~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNG-RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCC-cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCH
Confidence 356778889999999999999999999999887557 999999875 455433344599999999998643
No 46
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.70 E-value=6.8e-16 Score=154.92 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcC-EEEEccCCChH--HHhhh
Q 013476 233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD--SVRKL 302 (442)
Q Consensus 233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~-~VVlAtG~~s~--~l~~~ 302 (442)
.++..|.+.+++.|++|++++++++|+.+++| +|+||+++. +++...++|+ .||||||+|+. .+++.
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g-~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDG-AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCC-cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 35556777888889999999999999998668 999999864 5566779996 79999999984 44443
No 47
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.69 E-value=7.2e-16 Score=165.87 Aligned_cols=207 Identities=22% Similarity=0.252 Sum_probs=122.2
Q ss_pred hHHHHHHHhhhcCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCccc-chhhhhHHhhhccCcc
Q 013476 56 RVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLEKAVFNLDYG 134 (442)
Q Consensus 56 ~~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~ 134 (442)
++....+|. ++.++||||||+|.+|++||+++++.|++|+||||....+|++..+++.+. .+.+.+...... +
T Consensus 397 ~~i~~~~i~---~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~---D 470 (1167)
T PTZ00306 397 AEMRKKRIA---GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVL---D 470 (1167)
T ss_pred ccccccccc---cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhccc---c
Confidence 344456666 788999999999999999999999999999999999766666655544332 233222211110 1
Q ss_pred hHHHHHHHHHHHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccc
Q 013476 135 QLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK 214 (442)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~ 214 (442)
..+.+.+... .... . ..........+...+.+..+|+. ..|++ +..... +..
T Consensus 471 ~~~~~~~d~~------~~~~---~-----~~~d~~lv~~~~~~s~e~idwL~-~~Gv~-f~~~~~------~gg------ 522 (1167)
T PTZ00306 471 GGKFFERDTH------LSGK---G-----GHCDPGLVKTLSVKSADAISWLS-SLGVP-LTVLSQ------LGG------ 522 (1167)
T ss_pred cHHHHHHHHH------Hhcc---C-----CCCCHHHHHHHHHhhHHHHHHHH-HcCCC-ceeeec------cCC------
Confidence 1111111100 0000 0 00111222334444556778886 56665 322110 000
Q ss_pred cCCceeEEEee---Cccc--ChHHHHHHHHHHHHH---cCceEecCeEEEEEEEcCC--------CCeEEEEEEEEC--C
Q 013476 215 DRSLKGAVVYY---DGQM--NDSRLNVGLALTAAL---AGAAVLNHAEVISLIKDEA--------SNRIIGARIRNN--L 276 (442)
Q Consensus 215 ~~~~~~~~~~~---~~~~--~~~~l~~~l~~~~~~---~Gv~i~~~~~v~~l~~~~~--------g~~v~gV~~~~~--~ 276 (442)
.......... .+.. ....++..|.+.+++ .|++|++++++++|+.+++ + +|+||++++. .
T Consensus 523 -~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~-~V~Gv~~~~~~~~ 600 (1167)
T PTZ00306 523 -ASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREI-RVTGVRYKQASDA 600 (1167)
T ss_pred -CCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccc-eEEEEEEEecccC
Confidence 0000111111 1111 124466777777665 4999999999999998742 3 8999999862 1
Q ss_pred CCceEEEEcCEEEEccCCChHH
Q 013476 277 SGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 277 ~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
+|+...++||.||||||+|+.+
T Consensus 601 ~g~~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 601 SGQVMDLLADAVILATGGFSND 622 (1167)
T ss_pred CCcEEEEEeceEEEecCCcccC
Confidence 6666789999999999999974
No 48
>PLN02815 L-aspartate oxidase
Probab=99.69 E-value=1.3e-15 Score=152.34 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=114.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
++.++||||||+|++||+||+.|++.| +|+||||....+++|..+.|.+..... ..++.+.+.+......
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~---------~~Ds~e~~~~d~~~~g 95 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD---------PSDSVESHMRDTIVAG 95 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCC---------CCCCHHHHHHHHHHhc
Confidence 355699999999999999999999999 999999998766666655544332110 0112222222111111
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceec-CHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
. . .+.......+...+.+..+|+. .+|++ +..- +..-....+.. ......++.
T Consensus 96 ~------~---------~~d~~lv~~~~~~s~e~i~~L~-~~Gv~-F~~~~~g~~~~~~~gg-------~s~~R~~~~-- 149 (594)
T PLN02815 96 A------F---------LCDEETVRVVCTEGPERVKELI-AMGAS-FDHGEDGNLHLAREGG-------HSHHRIVHA-- 149 (594)
T ss_pred c------C---------CCcHHHHHHHHHHHHHHHHHHH-HhCCe-eeecCCCCccccCCCC-------CccCceeec--
Confidence 0 0 0111122233444456677775 56765 2211 00000000000 000011111
Q ss_pred cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCe--EEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNR--IIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~--v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+......++..|.+.++++ |++|++++.+++|+.+++|.+ |+||++.+..+++...+.||.||||||+++.
T Consensus 150 ~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 150 ADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 1122356788888888765 899999999999998643313 8999987545676678899999999999984
No 49
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.69 E-value=2.3e-15 Score=151.55 Aligned_cols=203 Identities=13% Similarity=0.088 Sum_probs=115.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
++.++||||||+|++||+||+.|++.|++|+||||....++.+..+.|.+....... ..+..+..........
T Consensus 9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~-------~~ds~~~~~~dt~~~g 81 (591)
T PRK07057 9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNM-------SEDNWHYHFYDTIKGS 81 (591)
T ss_pred ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccc-------cccChhHhHHHHHHhc
Confidence 356699999999999999999999999999999998765555555544433221100 0111111111100000
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeC
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
..+ +.......+...+.+..+|+. ..|++ +......... ..+................+.
T Consensus 82 ------~~~---------~d~~~v~~~~~~a~~~i~~L~-~~Gv~-f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~-- 142 (591)
T PRK07057 82 ------DWL---------GDQDAIEFMCREAPNVVYELE-HFGMP-FDRNADGTIYQRPFGGHTANYGEKPVQRACAA-- 142 (591)
T ss_pred ------CCC---------CCHHHHHHHHHHHHHHHHHHH-hcCCc-ceeCCCCcEeeeccCCccccccCCccceeeec--
Confidence 000 011112223334445667765 56665 2211000000 000000000000001111111
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+...-..++..|.+.+.+.|+++++++.+++|+.+++| +|.||++.+..+++...+.||.||+|||+++.
T Consensus 143 ~~~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 143 ADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADG-DVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred CCCChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCC-eEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 11112468888988888899999999999999987557 99999986534666567899999999999885
No 50
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.69 E-value=2e-15 Score=151.89 Aligned_cols=196 Identities=15% Similarity=0.058 Sum_probs=113.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
+.+||||||+|++||+||+.|+++|++|+||||....+++|..+.|.+...... ... .++.+.+.+.......
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~---~~~---~Ds~e~~~~d~~~~g~- 74 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNT---KGE---GDSPWIHFDDTVYGGD- 74 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCc---CCC---CCCHHHHHHHHHHhcC-
Confidence 458999999999999999999999999999999987666666665544322110 000 1111111111111110
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (442)
.+ +.......+...+.+..+|+. .+|++....-+.......+.. .......+ .+..
T Consensus 75 -----~~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~R~~~--~~~~ 130 (589)
T PRK08641 75 -----FL---------ANQPPVKAMCEAAPGIIHLLD-RMGVMFNRTPEGLLDFRRFGG-------TLHHRTAF--AGAT 130 (589)
T ss_pred -----Cc---------CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCcEeeeccCC-------eecccccc--cCCC
Confidence 00 011112223333445666765 566652111000000000000 00000001 1112
Q ss_pred ChHHHHHHHHHHHHHcC----ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 230 NDSRLNVGLALTAALAG----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~G----v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
....++..|.+.+++.+ ++++.++.+++|+.+++| +|+||++.+..+++...+.||.||+|||+++.
T Consensus 131 tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 131 TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEG-VCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred cHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCC-EEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 34567788887776543 789999999999986557 99999998744565567899999999999985
No 51
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.68 E-value=2.7e-15 Score=149.70 Aligned_cols=195 Identities=16% Similarity=0.109 Sum_probs=113.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++||+||+.|++.|++|+||||....+++|..+.|.+..... ..++.+.+.+.......
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~---------~~ds~e~~~~d~~~~g~ 84 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLD---------PGDSPEAHVADTLVAGA 84 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccC---------CCCCHHHHHHHHHHhcC
Confidence 345999999999999999999999999999999998666666555443322110 01111111111111110
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
.+ +.......+...+.+..+|+. .+|++.....+..-....+.. .......+ ..+.
T Consensus 85 ------g~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~G~~~~~~~~g-------~~~~r~~~-~~~d 140 (541)
T PRK07804 85 ------GL---------CDPDAVRSLVAEGPRAVRELV-ALGARFDESPDGRWALTREGG-------HSRRRIVH-AGGD 140 (541)
T ss_pred ------CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCcEeeeccCC-------eecCeeEe-cCCC
Confidence 00 011112223333445667775 466652111010000000000 00001111 1111
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChH
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..-..+...|.+.+++.|+++++++.|++|+.+++| +|+||.+.+. .++....+.||.||+|||+++.
T Consensus 141 ~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 141 ATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG-AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC-eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 233568889999998999999999999999987657 9999988631 1122357899999999999884
No 52
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.67 E-value=3.9e-15 Score=149.06 Aligned_cols=194 Identities=21% Similarity=0.197 Sum_probs=111.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC-CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
++.++||||||+|++|++||+.+ +.|++|+||||... .+|++..+.|.+..... ..++.+...+.+...
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~---------~~d~~~~~~~d~~~~ 73 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLN---------PEDSFEKHFEDTMKG 73 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCC---------CCCCHHHHHHHHHHH
Confidence 35669999999999999999999 99999999999864 34555554443322110 011211111111111
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
... .........+...+.+..+|+. .+|++ +..-....... .+. .........+.
T Consensus 74 ~~~---------------~~d~~lv~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~-~~~-----~g~~~~r~~~~-- 128 (543)
T PRK06263 74 GAY---------------LNDPKLVEILVKEAPKRLKDLE-KFGAL-FDRTEDGEIAQ-RPF-----GGQSFNRTCYA-- 128 (543)
T ss_pred hcC---------------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-ceeCCCCceee-ccc-----CCeEcCeEEEC--
Confidence 100 0001111222333445666765 56665 21100000000 000 00000011111
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+......++..|.+.+++.|+++++++.+++|+.++++ +|+||.+.+..+++...++||.||+|||+++.
T Consensus 129 ~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 129 GDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENR-EVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc-EEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 11123567888888888899999999999999987755 69999886534566668999999999999874
No 53
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.67 E-value=2.6e-15 Score=152.03 Aligned_cols=196 Identities=19% Similarity=0.131 Sum_probs=113.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++|++||+.|++.|++|+||||....+++|..+.|.+........ ..++.+...+.......
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~------~~ds~~~~~~D~~~~g~ 79 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVN------PKDNWQVHFRDTMRGGK 79 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCC------CCCCHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999998666666655554433221100 00111111111111110
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeCc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYDG 227 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~ 227 (442)
. + ........+...+.+..+|+. .+|++ +.......+. ..+.. ......++. +
T Consensus 80 ~------l---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~~~~gg-------~~~~r~~~~--~ 133 (626)
T PRK07803 80 F------L---------NNWRMAELHAKEAPDRVWELE-TYGAL-FDRTKDGRISQRNFGG-------HTYPRLAHV--G 133 (626)
T ss_pred c------C---------CcHHHHHHHHHHhHHHHHHHH-HCCCc-eEecCCCceeeeecCC-------cccCeEEec--C
Confidence 0 0 000111112223334556664 56765 2211100000 00000 001111111 1
Q ss_pred ccChHHHHHHHHHHHHHc--------C-----ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 228 QMNDSRLNVGLALTAALA--------G-----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~--------G-----v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
......++..|.+.+++. | +++++++.|++|+.++ | +|.||.+.+..+++...+.||.||+|||+
T Consensus 134 ~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 134 DRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-G-RIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred CCcHHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 112356778888877766 7 9999999999999865 6 99999876545666668999999999999
Q ss_pred ChHH
Q 013476 295 FCDS 298 (442)
Q Consensus 295 ~s~~ 298 (442)
++..
T Consensus 212 ~~~~ 215 (626)
T PRK07803 212 IGKS 215 (626)
T ss_pred ccCC
Confidence 7743
No 54
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.67 E-value=3e-15 Score=148.67 Aligned_cols=210 Identities=20% Similarity=0.205 Sum_probs=112.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCC--cccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTK--LIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
.++||||||+| +|++||++|++.|++|+||||....++++..+.+ ++.+....+...... ...+...+.+....
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~ 81 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTD---DTIEDALEYYHAVV 81 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcc---hHHHHHHHHHHHHh
Confidence 46999999999 9999999999999999999999865566544433 333322222111000 11111111111110
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCcc--c--cccccCC------
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTL--A--MKAKDRS------ 217 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~--~--~~~~~~~------ 217 (442)
... ........+...+....+|+.+..++. ++...........|.. . ++.....
T Consensus 82 ----------~~~-----~~~~l~~~~~~~s~~~i~wl~~~~Gv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (513)
T PRK12837 82 ----------GDR-----TPRDLQETYVRGGAPLIEYLEQDEHFE-FAELPWPDYFGKAPKARADGQRHIVPKPLPAAAL 145 (513)
T ss_pred ----------ccc-----CCHHHHHHHHHHHHHHHHHHHhCCCce-eeecCCCCcCCCCCCcccCCcceeecCCCChHHh
Confidence 000 011122334445566778876444554 2211000000000000 0 0000000
Q ss_pred ------ceeEEEee-Ccc------cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEE
Q 013476 218 ------LKGAVVYY-DGQ------MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDT 283 (442)
Q Consensus 218 ------~~~~~~~~-~~~------~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i 283 (442)
..+.+... .+. .....++..|++.+.+. |++|+++++|++|+.++ | +|+||++.. +++...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g-~v~Gv~~~~--~g~~~~i 221 (513)
T PRK12837 146 GELREQIRGPLDTERLGAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVED-G-RVVGAVVER--GGERRRV 221 (513)
T ss_pred chhHHhccCccchhhhccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-C-EEEEEEEEE--CCcEEEE
Confidence 00000000 000 01235677777776664 99999999999999875 6 999999864 5666789
Q ss_pred EcC-EEEEccCCChH--HHhhhh
Q 013476 284 YAK-VVVNAAGPFCD--SVRKLA 303 (442)
Q Consensus 284 ~a~-~VVlAtG~~s~--~l~~~~ 303 (442)
+|+ .||||||+|.. .+++.+
T Consensus 222 ~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 222 RARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred EeCceEEEeCCCccCCHHHHHHh
Confidence 995 89999999864 344444
No 55
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.67 E-value=4.8e-15 Score=149.18 Aligned_cols=69 Identities=28% Similarity=0.341 Sum_probs=57.6
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHHHhh
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVRK 301 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~l~~ 301 (442)
+++..++..|.+.+++.|++|+++++|++|+.++ | +|+||++++ ++....++| |.||+|||+|+.++..
T Consensus 214 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g-~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 214 VNGNALVARLLKSAEDLGVRIWESAPARELLRED-G-RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-C-EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 4567788999999999999999999999999875 6 999999875 333457899 9999999999975544
No 56
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.67 E-value=5e-15 Score=150.25 Aligned_cols=201 Identities=22% Similarity=0.208 Sum_probs=114.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++||+||+.|+++|++|+||||.....+.|..+.|.+...... .... ..++.+..+........
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~---~~~g-~~Ds~e~~~~Dt~k~~~ 78 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGN---AVKG-EGDNEDVHFADTVKGSD 78 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccc---cccC-CCCCHHHHHHHHHHhcC
Confidence 4569999999999999999999999999999999976554444333222111000 0000 01122221111111110
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHh--------hH-----HhhCCcccccccc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQ--------ES-----AELFPTLAMKAKD 215 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~-----~~~~p~~~~~~~~ 215 (442)
. .+.......+...+.+..+|+. .+|++.....+.. .. .+....+ ..
T Consensus 79 ------~---------~~D~~~vr~~v~~sp~~i~~L~-~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i----~~ 138 (657)
T PRK08626 79 ------W---------GCDQEVARMFVHTAPKAVRELA-AWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLI----NA 138 (657)
T ss_pred ------C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCCCeecCCCccccccccccccccccccccccc----cc
Confidence 0 0111112223334445666765 4565422111100 00 0000001 00
Q ss_pred CCceeEE------EeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEE
Q 013476 216 RSLKGAV------VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVV 289 (442)
Q Consensus 216 ~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VV 289 (442)
. ..++. +..++. -..++..|.+.+++.|++|+.++.+++|+.++ | +|.||++.+..+|+...+.||.||
T Consensus 139 r-~~GG~~~~R~~~~~d~t--G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~G~~~~i~AkaVV 213 (657)
T PRK08626 139 R-DFGGTKKWRTCYTADGT--GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-K-RCYGAVVRCLITGELRAYVAKATL 213 (657)
T ss_pred c-cccccccceeEecCCCc--HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCeEE
Confidence 0 11111 111221 24567788888888999999999999999876 6 999999986457776788999999
Q ss_pred EccCCChHH
Q 013476 290 NAAGPFCDS 298 (442)
Q Consensus 290 lAtG~~s~~ 298 (442)
+|||+|+..
T Consensus 214 LATGG~g~~ 222 (657)
T PRK08626 214 IATGGYGRI 222 (657)
T ss_pred ECCCcccCC
Confidence 999998853
No 57
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.67 E-value=3.5e-15 Score=150.24 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=114.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.++||||||+|++|++||++|++. ++|+||||....+++|..+.|.+...... ...+..+...........
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~-------~~~D~~e~~~~d~~~~g~- 74 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALAN-------VEEDNWEWHTFDTVKGGD- 74 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccC-------CCCCCHHHHHHHHHHhhc-
Confidence 358999999999999999999987 99999999976666665554443321110 011122111111111000
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC----CceeEEEee
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR----SLKGAVVYY 225 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~ 225 (442)
. .+.......+...+.+..+|+. .+|++.....+.......++.. ... ......+..
T Consensus 75 -----~---------~~d~~~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~----s~~~~~~~~~r~~~~~ 135 (583)
T PRK08205 75 -----Y---------LVDQDAAEIMAKEAIDAVLDLE-KMGLPFNRTPEGKIDQRRFGGH----TRDHGKAPVRRACYAA 135 (583)
T ss_pred -----C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeecccccc----cccccCCCccceeccC
Confidence 0 0111112223334445667775 5777521111111100111110 000 000111111
Q ss_pred CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC---CCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~---g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
+ .....++..|.+.+++.|+++++++.+++|+.+++ | +|+||++.+..+++...+.||.||+|||+++..
T Consensus 136 ~--~tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 136 D--RTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP-VAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred C--CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC-cEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 1 12356788899989999999999999999987653 6 999998864345655678999999999998853
No 58
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=138.52 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHHh
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSVR 300 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l~ 300 (442)
...++++|+..+++.||+++++++|.++..++++ ..+.. .+|. .++||.+|+|||+-| -.++
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~---f~l~t---~~g~--~i~~d~lilAtGG~S~P~lGstg~gy~iA 181 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG---FRLDT---SSGE--TVKCDSLILATGGKSWPKLGSTGFGYPIA 181 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce---EEEEc---CCCC--EEEccEEEEecCCcCCCCCCCCchhhHHH
Confidence 3678999999999999999999999999998743 22333 2333 899999999999654 3678
Q ss_pred hhhCCCC
Q 013476 301 KLADQNV 307 (442)
Q Consensus 301 ~~~g~~~ 307 (442)
+.+|+++
T Consensus 182 ~~~G~~I 188 (408)
T COG2081 182 RQFGHTI 188 (408)
T ss_pred HHcCCcc
Confidence 8888764
No 59
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.66 E-value=7.9e-15 Score=147.73 Aligned_cols=64 Identities=30% Similarity=0.411 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHHH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSV 299 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~l 299 (442)
..++..|.+.+++.|++|+++++|++|+.++ + +|+||++.+ .++ ...+.+ +.||+|||+++.++
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g-~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-G-RVVGARVID-AGG-ERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchH
Confidence 4577788888999999999999999999876 6 999999875 233 346788 58999999998543
No 60
>PRK06185 hypothetical protein; Provisional
Probab=99.66 E-value=1.8e-14 Score=140.15 Aligned_cols=146 Identities=20% Similarity=0.138 Sum_probs=91.0
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
+....+...|.+.+.+. |++++++++++++..++ + ++++|.+.. .++ ..+++||.||.|+|.+| .+.+.+|+..
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~-~v~~v~~~~-~~g-~~~i~a~~vI~AdG~~S-~vr~~~gi~~ 179 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-G-RVTGVRART-PDG-PGEIRADLVVGADGRHS-RVRALAGLEV 179 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEc-CCC-cEEEEeCEEEECCCCch-HHHHHcCCCc
Confidence 44456778888887765 89999999999999877 4 788888764 233 25799999999999999 4888888764
Q ss_pred CCcccCCCeeEEEeCCCCCCCCc-eEEeeecCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHHhhhhc
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGM-GLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL 385 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (442)
...+..+..+.+......... ..+.. ..++..++++|..+.+.++.+.... ..........+++.+.+...+
T Consensus 180 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~llP~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 252 (407)
T PRK06185 180 --REFGAPMDVLWFRLPREPDDPESLMGR-FGPGQGLIMIDRGDYWQCGYVIPKG---GYAALRAAGLEAFRERVAELA 252 (407)
T ss_pred --cccCCCceeEEEecCCCCCCCcccceE-ecCCcEEEEEcCCCeEEEEEEecCC---CchhhhhhhHHHHHHHHHHhC
Confidence 334544444433322111111 11222 2334467788877766676665321 122223334455666665555
No 61
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.66 E-value=6.8e-15 Score=148.09 Aligned_cols=194 Identities=15% Similarity=0.104 Sum_probs=110.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
.++||||||+|++|++||++|++. |++|+||||....++.+....|.+....... . ..+..+...+......
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~----~--~~ds~e~~~~d~~~~~ 75 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNV----D--PEDSWEAHAFDTVKGS 75 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCC----C--CCCCHHHHHHHHHHHh
Confidence 468999999999999999999987 4899999999764444443333332221100 0 0111111111111110
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHH-hhCCccccccccCCceeEEEeeC
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
. .+ +.......+...+.+..+|+. ..|++ +......... ..+.. .......+..+
T Consensus 76 ~------~l---------~d~~~v~~l~~~a~~~i~~L~-~~Gv~-f~~~~~g~~~~~~~gg-------~~~~r~~~~~~ 131 (575)
T PRK05945 76 D------YL---------ADQDAVAILTQEAPDVIIDLE-HLGVL-FSRLPDGRIAQRAFGG-------HSHNRTCYAAD 131 (575)
T ss_pred C------CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCc-eEECCCCcEeeccccc-------cccCeeEecCC
Confidence 0 00 011112222333345566664 56765 2211110000 00000 00111111111
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.....++..|.+.+++.|++|++++.|++|..++ | +|.||.+.+..+++...+.||.||+|||+++.
T Consensus 132 --~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 132 --KTGHAILHELVNNLRRYGVTIYDEWYVMRLILED-N-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred --CChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 1235688889988888999999999999998875 6 99999875434565567999999999999885
No 62
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.66 E-value=8.4e-15 Score=147.76 Aligned_cols=191 Identities=16% Similarity=0.088 Sum_probs=110.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCc-chHHHHHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDY-GQLKLVFHALEERKQVIR 151 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (442)
||||||+|++|++||+.|+++|++|+||||....++.+..+.|.+...... ... +..+...........
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~-------~~~~d~~e~~~~d~~~~~~--- 70 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGN-------VDPDDSWEWHAYDTVKGSD--- 70 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCC-------CCCCccHHHHHHHHHHHhC---
Confidence 899999999999999999999999999999976555554444333222110 000 111111111111000
Q ss_pred hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND 231 (442)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 231 (442)
. .........+...+.+..+|+. .+|++ +.......... .+. .........+.. ....
T Consensus 71 ---~---------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~~-~~~-----gg~~~~r~~~~~--~~~G 128 (566)
T TIGR01812 71 ---Y---------LADQDAVEYMCQEAPKAILELE-HWGVP-FSRTPDGRIAQ-RPF-----GGHSKDRTCYAA--DKTG 128 (566)
T ss_pred ---C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-ceecCCCcEee-ccc-----cccccCeeEECC--CCCH
Confidence 0 0011111222333345667775 56665 22111000000 000 000011111111 1123
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..+...|.+.+++.|+++++++.+++|+.++ | +|+||.+.+..+++...+.||.||+|||+++.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-G-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 4677888888888899999999999999875 6 99999886534565567999999999999884
No 63
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.65 E-value=4.3e-15 Score=148.08 Aligned_cols=190 Identities=17% Similarity=0.119 Sum_probs=111.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++|++||++|++ |++|+||||....+++|..+.|.+...... .++.+...+.......
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~---------~ds~e~~~~d~~~~g~ 76 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAP---------DDSPKLHYEDTLKAGA 76 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccC---------CCCHHHHHHHHHHhcC
Confidence 667999999999999999999974 999999999986666665554433322110 1121222211111110
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
. .........+...+.+..+|+. ..|++ +...+. .. ...+.. .......++..+
T Consensus 77 ------~---------~~d~~lv~~~~~~s~~~i~wL~-~~Gv~-f~~~~~-~~-~~~~~~-----g~s~~r~~~~~d-- 130 (553)
T PRK07395 77 ------G---------LCDPEAVRFLVEQAPEAIASLV-EMGVA-FDRHGQ-HL-ALTLEA-----AHSRPRVLHAAD-- 130 (553)
T ss_pred ------C---------CCCHHHHHHHHHHHHHHHHHHH-hcCCe-eecCCC-ce-eeeccc-----ccccCeEEEeCC--
Confidence 0 0111122233334456677775 56665 221110 00 000000 011111111111
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.....++..|.+.++++ |++|++++.+++|+.++ +| +|+||.+.. ++....+.||.||+|||+++.
T Consensus 131 ~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g-~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 131 TTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG-RCQGISLLY--QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCC-EEEEEEEEE--CCeEEEEEcCEEEEcCCCCcc
Confidence 12256788888888765 99999999999999874 37 999998864 555557899999999999864
No 64
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.65 E-value=7.1e-14 Score=134.81 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=78.2
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+.+.|.+.+++.|++++.++++..+..++++ .+.++.. +. .+++||.||.|+|..+ .+.+.+|...
T Consensus 91 ~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~~~-----~~-~e~~a~~vI~AdG~~s-~l~~~lg~~~ 162 (396)
T COG0644 91 IVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGVRA-----GD-DEVRAKVVIDADGVNS-ALARKLGLKD 162 (396)
T ss_pred EEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEEEc-----CC-EEEEcCEEEECCCcch-HHHHHhCCCC
Confidence 4667888999999999999999999999999998865 4433322 22 6899999999999987 6888887661
Q ss_pred CCcccCCC---eeEEEeCCCCCCCCceEEee--ecCCCcEEEEEecCC-cEEEccCCC
Q 013476 308 QPMICPSS---GVHIVLPDYYSPEGMGLIVP--KTKDGRVVFMLPWLG-RTVAGTTDS 359 (442)
Q Consensus 308 ~~~~~~~~---g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~g-~~~~g~~~~ 359 (442)
..|.. ++.-.+..+.........+. ....+.+.|++|.++ .+.+|....
T Consensus 163 ---~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~ 217 (396)
T COG0644 163 ---RKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVL 217 (396)
T ss_pred ---CChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEe
Confidence 11111 12111221111112222211 123345788999875 477776653
No 65
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.65 E-value=7.4e-15 Score=147.59 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=112.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
+.++||||||+|++||+||+.|++. |.+|+||||....++++..+.|.+..... ..++.+.+.+.....
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~---------~~ds~e~~~~d~~~~ 72 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ---------DHDSFDYHFHDTVAG 72 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcC---------CCCCHHHHHHHHHHh
Confidence 5669999999999999999999987 47999999997666655555443322110 111222222221111
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
... + +.......+...+.+..+|+. .+|++....-+..-....+.. ......++..+
T Consensus 73 g~~------~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~~~ 129 (582)
T PRK09231 73 GDW------L---------CEQDVVEYFVHHCPTEMTQLE-QWGCPWSRKPDGSVNVRRFGG-------MKIERTWFAAD 129 (582)
T ss_pred ccc------C---------CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeeecccc-------ccCCeeEecCC
Confidence 110 0 111112223344456677775 577762111010000000000 01111111111
Q ss_pred cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
-.-..+...|.+.+.+. |++++.++.+++|+.++ | +|.||++.+..+++...+.||.||+|||+++.
T Consensus 130 --~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 130 --KTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred --CcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-C-EEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 11245777888777765 89999999999999875 6 99999886534666678999999999999884
No 66
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.65 E-value=6.4e-15 Score=147.40 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~ 297 (442)
..++..|.+.+++.|++++++++|++|+.++ | +|+||++.. +++...+.| +.||+|||+++.
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-G-RVVGVVVVR--DGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEEEE--CCeEEEEEecceEEEecCCccC
Confidence 4577788888999999999999999999876 6 999999874 555667899 589999999986
No 67
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.64 E-value=3.5e-14 Score=131.88 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=95.5
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+.+.|.+.+++.|++++++++++++..+++ ++. +.+. + +..+++||.||+|+|.++ .+.+.+++..
T Consensus 87 ~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~~-~~~~---~-~~~~~~a~~vv~a~G~~s-~~~~~~~~~~ 158 (295)
T TIGR02032 87 VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RVV-VIVR---G-GEGTVTAKIVIGADGSRS-IVAKKLGLRK 158 (295)
T ss_pred EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EEE-EEEc---C-ccEEEEeCEEEECCCcch-HHHHhcCCCC
Confidence 356678889999999999999999999999988774 432 3332 2 235799999999999998 5777776553
Q ss_pred CCcccCCCeeEEEeCCCC---CCCCceEEeee-cCCCcEEEEEecCC-cEEEccCCCCCCCCCCCCCCHHHHHHHHHHhh
Q 013476 308 QPMICPSSGVHIVLPDYY---SPEGMGLIVPK-TKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAIS 382 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~g-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (442)
. ......+....++... .+......+.. ..++.+.|++|..+ .+.++...... + .....++.++.+.
T Consensus 159 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~----~---~~~~~~~~~~~~~ 230 (295)
T TIGR02032 159 E-PRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSA----E---EGEDLKKYLKDFL 230 (295)
T ss_pred C-CcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccC----C---CCCCHHHHHHHHH
Confidence 1 1111112222333221 11111122211 11346788999865 46676554321 1 1223344555554
Q ss_pred hhcCCCCCCCCeeeeeeecccccc
Q 013476 383 DYLNVKVRRTDVLSAWSGIRPLAM 406 (442)
Q Consensus 383 ~~~~~~l~~~~~~~~~~G~r~~t~ 406 (442)
+.+ |.+...++...+.+.+|+..
T Consensus 231 ~~~-~~l~~~~~~~~~~~~~~~~~ 253 (295)
T TIGR02032 231 ARR-PELKDAETVEVIGAPIPIGR 253 (295)
T ss_pred HhC-cccccCcEEeeeceeeccCC
Confidence 555 55666666666777777653
No 68
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.64 E-value=9e-15 Score=147.40 Aligned_cols=195 Identities=15% Similarity=0.044 Sum_probs=113.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCC---CeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHH
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE 144 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G---~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (442)
++.++||||||+|++||+||+.|++.| ++|+||||....++.+..+.|.+...... . ..++.+.......
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~--~-----~~ds~e~~~~d~~ 74 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP--E-----KGDSFDLHAYDTV 74 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeecc--c-----cCCCHHHHHHHHH
Confidence 466799999999999999999999998 89999999986666555554443322110 0 0112211111111
Q ss_pred HHHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhH-HhhCCccccccccCCceeEEE
Q 013476 145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQES-AELFPTLAMKAKDRSLKGAVV 223 (442)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~ 223 (442)
..... + +.......+...+.+..+|+. .+|++ +........ ...+. ........+
T Consensus 75 ~~g~~------~---------~d~~lv~~~~~~s~~~i~~L~-~~Gv~-f~~~~~G~~~~~~~~-------g~~~~r~~~ 130 (577)
T PRK06069 75 KGSDF------L---------ADQDAVEVFVREAPEEIRFLD-HWGVP-WSRRPDGRISQRPFG-------GMSFPRTTF 130 (577)
T ss_pred Hhhcc------c---------CCHHHHHHHHHHHHHHHHHHH-HcCCe-eEecCCCcEeeeecC-------CcccceeeE
Confidence 11100 0 011112223333445667775 56765 221100000 00000 000111111
Q ss_pred eeCcccChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 224 YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 224 ~~~~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..+ .....++..|.+.+++ .|+++++++.+++|+.++ | +|+||.+.+..+++...+.||.||+|||+++.
T Consensus 131 ~~d--~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 131 AAD--KTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-G-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred cCC--CchHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 111 1124577888888776 599999999999999876 6 99999886534565567899999999999874
No 69
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.64 E-value=7.7e-15 Score=142.50 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=107.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.++||||||+|.+||+||+.|+ .|++|+||||....++.|..+.|.+.... ..+..+.+.+........
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~----------~~d~~~~~~~d~~~~g~~ 71 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR----------NKDDITSFVEDTLKAGQY 71 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC----------CCCCHHHHHHHHHHHhCC
Confidence 4599999999999999999985 69999999999765555443333222100 011212222111111100
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (442)
.........+...+.+..+|+. ..|++ +..... .. .+... ........++.. ..
T Consensus 72 ---------------~~d~~lv~~~~~~s~e~i~wL~-~~Gv~-f~~~~~-~~--~~~~~----g~~~~~r~~~~~--~~ 125 (433)
T PRK06175 72 ---------------ENNLEAVKILANESIENINKLI-DMGLN-FDKDEK-EL--SYTKE----GAHSVNRIVHFK--DN 125 (433)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-cccCCC-ce--eeecc----CccccCeEEecC--CC
Confidence 0001112233344456777775 45654 211100 00 00000 000011111111 12
Q ss_pred ChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 230 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
....++..|.+.+++ .|++|++++++++|+.++ + +|+||.+.. ++....+.||.||+|||+++.
T Consensus 126 ~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~-~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 126 TGKKVEKILLKKVKKRKNITIIENCYLVDIIEND-N-TCIGAICLK--DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-C-EEEEEEEEE--CCcEEEEEcCeEEEccCcccc
Confidence 235678888888875 499999999999998876 5 999988653 444457999999999999874
No 70
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.64 E-value=1.2e-14 Score=145.72 Aligned_cols=192 Identities=19% Similarity=0.099 Sum_probs=113.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
.++||||||+|++||+||+.|++. |++|+||||....++.+..+.|.+..... ..++.+.+.+......
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~---------~~ds~e~~~~dt~~~g 72 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTG---------DDDSLDEHFHDTVSGG 72 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcC---------CCCCHHHHHHHHHHhc
Confidence 459999999999999999999987 58999999998666655555443321110 0112222222111111
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 227 (442)
. .+ ........+...+.+..+|+. .+|++....-+.......+.. ......++..+
T Consensus 73 ~------~~---------~d~~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~R~~~~~~- 128 (580)
T TIGR01176 73 D------WL---------CEQDVVEYFVAEAPKEMVQLE-HWGCPWSRKPDGRVNVRRFGG-------MKKERTWFAAD- 128 (580)
T ss_pred C------Cc---------CcHHHHHHHHHHhHHHHHHHH-HcCCccEecCCCceeeeccCC-------ccCCeeeecCC-
Confidence 0 00 001112223333445667775 577762211111000000000 01111111111
Q ss_pred ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..-..++..|.+.+.+. |++++.++.+++|+.++ | +|+||.+.+..+|+...+.||.||+|||+++.
T Consensus 129 -~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 129 -KTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-G-RVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 12356788888887764 89999999999999875 6 99999886545676678999999999999985
No 71
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.63 E-value=1.4e-14 Score=143.48 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=111.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (442)
.++||||||+|++||+||++|++ |.+|+||||....+++|..+.|.+..... ..++.+.+.+........
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~---------~~ds~e~~~~d~~~~g~~ 71 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVA---------TYDSPNDHFEDTLVAGCH 71 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceeccc---------CCCCHHHHHHHHHHhccC
Confidence 36899999999999999999987 99999999998766666545444332211 011222222211111100
Q ss_pred HHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCccc
Q 013476 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (442)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (442)
.+.......+...+.+..+|+. .+|++.....+..-....+. .......++ ..+..
T Consensus 72 ---------------~~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~g-------g~~~~r~~~-~~gd~ 127 (510)
T PRK08071 72 ---------------HNNERAVRYLVEEGPKEIQELI-ENGMPFDGDETGPLHLGKEG-------AHRKRRILH-AGGDA 127 (510)
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeeccCc-------CccCCeEEe-cCCCC
Confidence 0111112223333445666665 46765211100000000000 000111111 11223
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
....++..|.+.++ .|++|++++.+++|..++ + +|.||.+.+ .+++...+.||.||+|||+++.
T Consensus 128 ~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 128 TGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-G-RCIGVLTKD-SEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cHHHHHHHHHHHHh-cCCEEEECeEhhheeecC-C-EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcc
Confidence 34668888888776 699999999999998765 6 999999876 4566567899999999999885
No 72
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.63 E-value=2.2e-14 Score=143.15 Aligned_cols=196 Identities=18% Similarity=0.145 Sum_probs=112.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
+.++||||||+|++|++||+.|++. .+|+||||....+++|..+.|.+..... ..++.+.+.+.......
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~---------~~ds~e~~~~d~~~~g~ 75 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD---------ETDSIESHVEDTLIAGA 75 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccC---------CCccHHHHHHHHHHHcc
Confidence 4569999999999999999999987 8999999998766666666554432211 00111111111111000
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCH-hhHHhhCCccccccccCCceeEEEeeCc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSA-QESAELFPTLAMKAKDRSLKGAVVYYDG 227 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 227 (442)
. .+.......+...+.+..+|+. .+|++ +..... .......+... ........++..
T Consensus 76 ------~---------~~d~~~v~~~~~~~~~~i~~L~-~~Gv~-f~~~~~~~g~~~~~~~~~---gg~~~~r~~~~~-- 133 (536)
T PRK09077 76 ------G---------LCDEDAVRFIAENAREAVQWLI-DQGVP-FTTDEQANGEEGYHLTRE---GGHSHRRILHAA-- 133 (536)
T ss_pred ------C---------CCCHHHHHHHHHHHHHHHHHHH-HcCCc-cccCCCCCccccccccCC---CCccCCceEecC--
Confidence 0 0011112223334456677775 56665 221110 00000000000 000011111111
Q ss_pred ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcC-----CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE-----ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~-----~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...-..+...|.+.+++. |+++++++.+++|+.++ ++ +|+||.+.+..+++...+.||.||+|||+++.
T Consensus 134 ~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 134 DATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR-RVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC-EEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 112245777888877765 89999999999998754 36 99999987644666668999999999999884
No 73
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.63 E-value=1e-14 Score=146.24 Aligned_cols=206 Identities=14% Similarity=0.031 Sum_probs=107.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC--CCCCCccCCCCcccc-hhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED--FSSGTSSRSTKLIHG-GVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~--~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
.++||||||+|.+||+||+.|++.|++|+||||.. ..+|++..+.|.+.. +...+...... ++.+...+.+...
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~---ds~e~~~~d~~~~ 79 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIK---DSLELALQDWLGS 79 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcc---cCHHHHHHHHHhc
Confidence 46999999999999999999999999999999997 455666555444332 22221111111 1122222111111
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHH-HHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYW-VGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY 225 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 225 (442)
.. . ..... . ....+...+.. .+.+..+|+. ..|++..............+.. ........ +..
T Consensus 80 ~~------~-~~~~~-~--~~~~~~~~~~~~~s~e~i~wL~-~~Gv~f~~~~~~~~~~~~~~~~----~~~~~~r~-~~~ 143 (549)
T PRK12834 80 AG------F-DRPED-H--WPRQWAEAYVDFAAGEKRSWLH-SLGLRFFPVVGWAERGGGDAGG----HGNSVPRF-HIT 143 (549)
T ss_pred cC------C-CCccc-c--chHHHHHHHHHhCCHHHHHHHH-HcCCeeEecCCccccCCcccCC----cccccCce-ecC
Confidence 00 0 00000 0 00001112222 1346677775 4666421111000000000000 00000000 110
Q ss_pred CcccChHHHHHHHHHHHH---Hc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCC-------------CceEEEEcCEE
Q 013476 226 DGQMNDSRLNVGLALTAA---LA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLS-------------GKEFDTYAKVV 288 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~---~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~-------------g~~~~i~a~~V 288 (442)
. .....++..|.+.++ +. |++|++++++++|+.++ | +|+||++.+..+ ++...++||.|
T Consensus 144 ~--~~G~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~-g-~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaV 219 (549)
T PRK12834 144 W--GTGPGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD-G-AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAV 219 (549)
T ss_pred C--CCcHHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC-C-EEEEEEEEecccccccccccccccccceEEEecCEE
Confidence 0 012346667766554 23 69999999999999875 7 999999742111 12357899999
Q ss_pred EEccCCChHH
Q 013476 289 VNAAGPFCDS 298 (442)
Q Consensus 289 VlAtG~~s~~ 298 (442)
|||||+|+.+
T Consensus 220 ILATGGf~~n 229 (549)
T PRK12834 220 IVTSGGIGGN 229 (549)
T ss_pred EEeCCCcccC
Confidence 9999999854
No 74
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.62 E-value=3.3e-14 Score=140.61 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=111.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHH
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI 150 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (442)
++||||||+|++||+||+.|++.|. |+||||....++++..+.|.+...... .++.+...+.......
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~---------~ds~e~~~~d~~~~~~-- 69 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAE---------TDSIDSHVEDTLAAGA-- 69 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecC---------CCCHHHHHHHHHHhcC--
Confidence 4899999999999999999999998 999999976666665555444322110 0111111111111110
Q ss_pred HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccC
Q 013476 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (442)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 230 (442)
.+ +.......+...+.+..+|+. .+|++.....+..-....+. .......++. +...
T Consensus 70 ----~~---------~d~~~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~g-------g~~~~r~~~~--~~~~ 126 (488)
T TIGR00551 70 ----GI---------CDREAVEFVVSDARSAVQWLV-DQGVLFDRHEQGSYALTREG-------GHSYRRILHA--ADAT 126 (488)
T ss_pred ----Cc---------CCHHHHHHHHHhHHHHHHHHH-HcCCcceeCCCCCccccCCC-------CcCCCeEEEe--CCCC
Confidence 00 001111222333446677775 56665211111000000000 0011111111 1223
Q ss_pred hHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 231 ~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...+...|.+.+++ .|+++++++.+++|+.++ + +|+||.+.+ . +....+.||.||+|||+++.
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g-~v~Gv~~~~-~-~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIET-G-RVVGVWVWN-R-ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-C-EEEEEEEEE-C-CcEEEEEcCEEEECCCcccC
Confidence 46788899998887 699999999999998875 6 899998875 2 33457899999999999985
No 75
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.62 E-value=2.1e-14 Score=128.91 Aligned_cols=73 Identities=27% Similarity=0.295 Sum_probs=57.6
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---C---CCceEEEEcCEEEEccCCChHHHhhh
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---L---SGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~---~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
+++..+...|.+.+++.|++++++++|.++..++++ +|.||.+... . ..+...++||.||+|||.++. +.+.
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g-~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~-v~~~ 178 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDP-RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE-VVSV 178 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCC-cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH-HHHH
Confidence 467889999999999999999999999999887666 8999887521 0 112357999999999999984 4443
Q ss_pred h
Q 013476 303 A 303 (442)
Q Consensus 303 ~ 303 (442)
+
T Consensus 179 l 179 (257)
T PRK04176 179 L 179 (257)
T ss_pred H
Confidence 3
No 76
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.62 E-value=2.4e-14 Score=144.19 Aligned_cols=192 Identities=18% Similarity=0.128 Sum_probs=105.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHh
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRN 152 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (442)
|||||+|++||+||+.|++.|++|+||||.. +.++.+..+.|.+....... . ..++.+.+.+.......
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~-----~-~~ds~e~~~~d~~~~g~---- 70 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTK-----G-DGDSPWRHFDDTVKGGD---- 70 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccC-----C-CCCCHHHHHHHHHHhcC----
Confidence 7999999999999999999999999999997 55444544443322211100 0 01111111111111110
Q ss_pred CCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccChH
Q 013476 153 APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDS 232 (442)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (442)
.+ +.......+...+.+..+|+. ..|++.....+.......++. ......++..+ ....
T Consensus 71 --~~---------~d~~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~R~~~~~~--~tG~ 129 (603)
T TIGR01811 71 --FR---------ARESPVKRLAVASPEIIDLMD-AMGVPFAREYGGLLDTRSFGG-------VQVSRTAYARG--QTGQ 129 (603)
T ss_pred --CC---------CCHHHHHHHHHHHHHHHHHHH-HcCCEEEecCCCccccccccC-------cccCcceecCC--CChh
Confidence 00 001111222333345667775 567652111110000000100 00011111111 1123
Q ss_pred HHHHHHHHHHHH----cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 233 RLNVGLALTAAL----AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 233 ~l~~~l~~~~~~----~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.++..|.+.+++ .|+++++++++++|+.+++| +|+||.+.+..+++...+.||.||+|||+++.
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 455556555543 38999999999999987667 99999997644666678999999999999874
No 77
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.61 E-value=2.5e-14 Score=144.37 Aligned_cols=185 Identities=21% Similarity=0.144 Sum_probs=106.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
+.++||||||+|++||+||+.|++. |++|+||||....++.+ ...|....+... .. ..+.+.+.+.+...
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~-----~~--~ds~e~~~~d~~~~ 80 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYI-----GE--GETPEDYVRYVRKD 80 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCcccccccc-----cc--CCCHHHHHHHHHHh
Confidence 4469999999999999999999998 99999999987533222 122210000000 00 01111122211111
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
.. .+ ........+...+.+..+|+. .+|++.....+. ..++. . .. .
T Consensus 81 ~~------~~---------~d~~lv~~~~~~s~~~i~~L~-~~Gv~f~~~~~G----~~~~~--------g----~~--~ 126 (608)
T PRK06854 81 LM------GI---------VREDLVYDIARHVDSVVHLFE-EWGLPIWKDENG----KYVRR--------G----RW--Q 126 (608)
T ss_pred cc------CC---------CCHHHHHHHHHhHHHHHHHHH-HcCCeeeecCCC----Ccccc--------C----Cc--c
Confidence 10 00 011111222333345666664 566652111110 00000 0 00 0
Q ss_pred cccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...+...+...|.+.++++| +++++++.|++|..++ + +|+||.+.+..+++...+.||.||+|||+++.
T Consensus 127 ~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 127 IMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-N-RIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred CCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 01344567788888888875 9999999999998776 6 99999875434555568999999999999885
No 78
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.61 E-value=4.4e-14 Score=142.23 Aligned_cols=65 Identities=29% Similarity=0.312 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCCChHH
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 298 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~~s~~ 298 (442)
+...++..|.+.++++|+++++++++++|+.++ + +|+||.+.. +++...+.| |.||+|||+|+.+
T Consensus 219 ~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 219 MGNALIGRLLYSLRARGVRILTQTDVESLETDH-G-RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred ccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEec--CCeEEEEEccceEEECCCCcccC
Confidence 456788899999999999999999999998865 6 999998864 455567887 7999999999864
No 79
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.60 E-value=2.8e-14 Score=142.99 Aligned_cols=62 Identities=27% Similarity=0.369 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcC-EEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~-~VVlAtG~~s~ 297 (442)
..+...|.+.+++.|+++++++++++|+.++ + +|+||++.. +++...+.|+ .||+|||++..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g-~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED-G-RVTGVHAAE--SGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEe--CCcEEEEEeceeEEEccCCcCc
Confidence 3466777788888999999999999999875 6 999999864 4556789995 79999999875
No 80
>PRK08275 putative oxidoreductase; Provisional
Probab=99.60 E-value=4.2e-14 Score=141.91 Aligned_cols=192 Identities=21% Similarity=0.193 Sum_probs=107.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCC-CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEE 145 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (442)
+.++||||||+|++|++||+.|+++ |++|+||||..... +++....+ +... ... ....+.+.+.+....
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~----g~~~---~~~-~~~d~~~~~~~d~~~ 78 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMD----GLNN---AVI-PGHATPEQYTKEITI 78 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhh----hHhh---hhc-cCCCCHHHHHHHHHH
Confidence 4569999999999999999999987 78999999997532 22111111 1100 000 001122211111111
Q ss_pred HHHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEee
Q 013476 146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY 225 (442)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 225 (442)
... .+ .....-..+...+....+|+. .+|++ +......... .+.. ... +.+...
T Consensus 79 ~~~------~~---------~d~~~v~~~~~~s~~~i~~L~-~~Gv~-f~~~~~g~~~--~~~~------~~~-~~~~~~ 132 (554)
T PRK08275 79 AND------GI---------VDQKAVYAYAEHSFETIQQLD-RWGVK-FEKDETGDYA--VKKV------HHM-GSYVLP 132 (554)
T ss_pred hcC------CC---------ccHHHHHHHHHhhHHHHHHHH-HCCCe-eEeCCCCCEe--eecc------ccc-Cccccc
Confidence 100 00 001111122233345667774 56765 2211000000 0000 000 000000
Q ss_pred CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...-..+...|.+.+++.|++|++++.+++|+.+++| +|.||++.+..+|+...+.||.||+|||+++.
T Consensus 133 --~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 133 --MPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADG-RVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred --CCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC-eEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 0112467788888888899999999999999987447 99999876534565567899999999999874
No 81
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.59 E-value=3.3e-15 Score=142.27 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHH
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV 299 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l 299 (442)
....+++.|.+.+++.||+|+++++|.+|+.+++ .+..|.+. + ...+.||.||+|||+-| -.+
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~---~--~~~~~a~~vILAtGG~S~p~~GS~G~gy~~ 179 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTK---N--GGEYEADAVILATGGKSYPKTGSDGSGYRI 179 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEET---T--TEEEEESEEEE----SSSGGGT-SSHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeecc---C--cccccCCEEEEecCCCCccccCCCcHHHHH
Confidence 4578899999999999999999999999998874 66667662 2 35899999999999855 367
Q ss_pred hhhhCCCC
Q 013476 300 RKLADQNV 307 (442)
Q Consensus 300 ~~~~g~~~ 307 (442)
++.+|.++
T Consensus 180 a~~lGh~i 187 (409)
T PF03486_consen 180 AKKLGHTI 187 (409)
T ss_dssp HHHTT--E
T ss_pred HHHCCCcE
Confidence 78888764
No 82
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.58 E-value=5.5e-14 Score=139.48 Aligned_cols=190 Identities=17% Similarity=0.072 Sum_probs=108.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC-CCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (442)
+.++||||||+|++||+||++|+ |.+|+||||... .++++..+.|.+..... . .++.+.+.+......
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~------~---~ds~e~~~~d~~~~~ 75 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALG------P---DDSPALHAADTLAAG 75 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccC------C---CCCHHHHHHHHHHhh
Confidence 56799999999999999999997 579999999986 34445444443322110 0 011112222111111
Q ss_pred HHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCc
Q 013476 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (442)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 227 (442)
. . .+.......+...+.+..+|+. ..|++ +......... ..+. ..+.....++. .+
T Consensus 76 ~------g---------~~d~~~v~~~~~~s~~~i~wL~-~~Gv~-f~~~~~G~~~-~~~~-----~~~~~~r~~~~-~g 131 (513)
T PRK07512 76 A------G---------LCDPAVAALITAEAPAAIEDLL-RLGVP-FDRDADGRLA-LGLE-----AAHSRRRIVHV-GG 131 (513)
T ss_pred C------C---------CCCHHHHHHHHHHHHHHHHHHH-HhCCc-cccCCCCccc-cccc-----cCccCCcEEEc-CC
Confidence 0 0 0111112223333445667775 56664 2110000000 0000 00011111111 12
Q ss_pred ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
......++..|.+.+++. |++++.++.+++|..++ | +|+||++.+ ++....+.||.||+|||+++.
T Consensus 132 ~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 132 DGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDD-G-AVAGVLAAT--AGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECcChhheeecC-C-EEEEEEEEe--CCeEEEEECCEEEEcCCCCcC
Confidence 223467888998888875 89999999999998765 6 999999874 333457899999999999874
No 83
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.57 E-value=1.8e-13 Score=137.05 Aligned_cols=186 Identities=19% Similarity=0.165 Sum_probs=107.2
Q ss_pred cEEEECCChHHHHHHHHHH----HCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAA----TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La----~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
||||||+|++||+||+.|+ +.|++|+||||......++ .+.|+...+....... ..++.+...+.......
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~----g~Ds~e~~~~d~~~~~~ 75 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRF----GENNAEDYVRYVRTDLM 75 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhccc----CCCCHHHHHHHHHHhcC
Confidence 8999999999999999998 7899999999997543333 3444221111111000 01122222222111110
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
. .+.......+...+.+..+|+. .+|++ +....... ...+ . +.....
T Consensus 76 ------g---------l~d~~lV~~lv~~s~~~i~~L~-~~Gv~-F~~~~~~G--~~~~--------~---g~~~~~--- 122 (614)
T TIGR02061 76 ------G---------LVREDLIFDMARHVDDSVHLFE-EWGLP-LWIKPEDG--KYVR--------E---GRWQIM--- 122 (614)
T ss_pred ------C---------CCcHHHHHHHHHHHHHHHHHHH-HcCCC-ceecCCCC--cccc--------C---CCcccC---
Confidence 0 0112222334445556777775 57776 32110000 0000 0 000000
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.....+...+...+++.+++++.++.+++|+.+++ | +|+||++.+..+++...+.||.||+|||+|+.
T Consensus 123 ~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G-rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 123 IHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN-RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred cCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC-eEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 01234445555666677789999999999998653 6 99999986645676678999999999999984
No 84
>PLN02697 lycopene epsilon cyclase
Probab=99.57 E-value=1e-12 Score=129.14 Aligned_cols=163 Identities=10% Similarity=0.099 Sum_probs=93.8
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+.+.|++.+.+.|+++ .+++|+++..+++ .+..+... +| ..+.|+.||+|+|.+|..++..-....
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~---dG--~~i~A~lVI~AdG~~S~rl~~~~~~~~ 259 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACE---DG--RVIPCRLATVASGAASGRLLQYEVGGP 259 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEc---CC--cEEECCEEEECCCcChhhhhccccCCC
Confidence 5777889999999999999998 6889999988764 33323332 33 479999999999999965544110011
Q ss_pred CCcccCCCeeEEEeCC-CCCCCCceEEee------------ecCCCcEEEEEecC-CcEEE-ccCCCCCCCCCCCCCCHH
Q 013476 308 QPMICPSSGVHIVLPD-YYSPEGMGLIVP------------KTKDGRVVFMLPWL-GRTVA-GTTDSDTVITLLPEPHED 372 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~p~~-g~~~~-g~~~~~~~~~~~~~~~~~ 372 (442)
........|+.+.+.. ...+.. ...+. +.....++|++|.. +.+.+ +..... .+....+
T Consensus 260 ~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~-----~~~l~~~ 333 (529)
T PLN02697 260 RVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS-----KDAMPFD 333 (529)
T ss_pred CcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeecc-----CCCCCHH
Confidence 1234555566666543 222221 12211 01123579999985 45566 433211 1122333
Q ss_pred HHH-HHHHHhhhhcCCCCCCCCeeeeeeeccccccC
Q 013476 373 EIQ-FILDAISDYLNVKVRRTDVLSAWSGIRPLAMD 407 (442)
Q Consensus 373 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~D 407 (442)
.++ .+.+.+... .+...++.+.-.|+.|+..+
T Consensus 334 ~l~~~L~~~l~~~---Gi~~~~i~~~E~g~iPm~g~ 366 (529)
T PLN02697 334 LLKKRLMSRLETM---GIRILKTYEEEWSYIPVGGS 366 (529)
T ss_pred HHHHHHHHHHHhC---CCCcceEEEEEeeeecCCCC
Confidence 333 333343332 34445566666789999543
No 85
>PRK06184 hypothetical protein; Provisional
Probab=99.56 E-value=7.1e-13 Score=132.10 Aligned_cols=75 Identities=23% Similarity=0.150 Sum_probs=56.7
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~ 308 (442)
+....+...|.+.+.+.|++++++++++++.++++ .|+ +++.+ .+ ...+++||+||.|+|.+| .+.+.+|+...
T Consensus 106 i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~-~~-~~~~i~a~~vVgADG~~S-~vR~~lgi~~~ 179 (502)
T PRK06184 106 VPQWRTERILRERLAELGHRVEFGCELVGFEQDAD--GVT-ARVAG-PA-GEETVRARYLVGADGGRS-FVRKALGIGFP 179 (502)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEE-EEEEe-CC-CeEEEEeCEEEECCCCch-HHHHhCCCCcc
Confidence 34456777888888888999999999999998875 343 33332 12 245899999999999999 68888887754
Q ss_pred C
Q 013476 309 P 309 (442)
Q Consensus 309 ~ 309 (442)
.
T Consensus 180 g 180 (502)
T PRK06184 180 G 180 (502)
T ss_pred c
Confidence 3
No 86
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.56 E-value=5.5e-14 Score=138.66 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=122.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHH
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (442)
..++||||||+|.+||.||+.+++.|++|+|+||..+..+.|..+.|.++........ ...++.+..+........
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~----~~~ds~e~~~~dtvkg~d 79 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVD----VEGDSPELHFYDTVKGGD 79 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCccc----ccCCCHHHHHHHHHhccC
Confidence 4569999999999999999999999999999999986666666665555443211100 000111221111111100
Q ss_pred HHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcc
Q 013476 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (442)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 228 (442)
. .........+...+.+...++. ++|.+..++.+.......+... ... .....+.
T Consensus 80 ~---------------l~dqd~i~~~~~~ap~~v~~Le-~~G~~f~r~~~G~~~~r~fgg~----~~~-----rt~~~~~ 134 (562)
T COG1053 80 G---------------LGDQDAVEAFADEAPEAVDELE-KWGVPFSRTEDGRIYQRRFGGH----SKP-----RTCFAAD 134 (562)
T ss_pred C---------------cCCHHHHHHHHHhhHHHHHHHH-HhCCCcccCCCccccccccCCc----CCC-----cceecCC
Confidence 0 0001111222333335556664 6676655555443333333322 000 1112222
Q ss_pred cChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.....++..|.+.+.+ .+.+++.+..+.+|..++++ .|.||+..+..+++...+.+|.||+|||++.
T Consensus 135 ~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~-~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 135 KTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG-GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred CCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC-cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 2336688888888887 67899999999999988755 6999999887788888889999999999988
No 87
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.55 E-value=2.4e-13 Score=121.72 Aligned_cols=67 Identities=28% Similarity=0.377 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCC---ceEEEEcCEEEEccCCCh
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g---~~~~i~a~~VVlAtG~~s 296 (442)
+...+...|.+.+.+.|+++++++.+.++..++++++|.||.+... ..+ +...++||.||.|||..+
T Consensus 98 ~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 98 DSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 4467888999999999999999999999998764336999987421 011 245899999999999877
No 88
>PRK08244 hypothetical protein; Provisional
Probab=99.55 E-value=1.9e-12 Score=128.80 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=56.1
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
+....+.+.|.+.+++.|++++++++++++.++++ .|+ |.+++ .+| ..+++||+||.|+|.+| .+.+.+|+..
T Consensus 97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~-~~g-~~~i~a~~vVgADG~~S-~vR~~lgi~~ 169 (493)
T PRK08244 97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVE-VVVRG-PDG-LRTLTSSYVVGADGAGS-IVRKQAGIAF 169 (493)
T ss_pred ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEE-EEEEe-CCc-cEEEEeCEEEECCCCCh-HHHHhcCCCc
Confidence 34456677788888888999999999999988775 443 45543 233 35799999999999999 6888888764
No 89
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.53 E-value=1.2e-12 Score=126.10 Aligned_cols=190 Identities=17% Similarity=0.127 Sum_probs=98.7
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
.++...|-+.|.+.+.+.|++++. +.|+++..+++ .+ .|++.+. .+++..++.||.||.|+|.+| .+.+.+|
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~~--~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S-~v~r~lg 162 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIH-GLFLKLERDRD--GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANS-PVAKELG 162 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcCC--eE-EEEEEeccccCCCcceEEEeCEEEECCCCCc-HHHHHcC
Confidence 366778888999999999999975 46999987764 33 3554420 123345799999999999999 6888877
Q ss_pred CCCCCcccCCCeeEEEeCCC---CCCCCceEEeee-cCCCcEEEEEecCCcEEEccCCCCCCCCCCCCCCHHHHHHHHHH
Q 013476 305 QNVQPMICPSSGVHIVLPDY---YSPEGMGLIVPK-TKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDA 380 (442)
Q Consensus 305 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~p~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+...........+.+..+.. ..+....+++.. ...+.+.|++|..+...+|..... . ..+ .+.+++.
T Consensus 163 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~-----~-~~~---~~~~~~~ 233 (388)
T TIGR02023 163 LPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGT-----H-GFD---AKQLQAN 233 (388)
T ss_pred CCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECC-----C-CCC---HHHHHHH
Confidence 65211111000012211211 111111122210 123457889998776666653211 1 112 2334444
Q ss_pred hhhhcCCCCCCCCeeeeeeeccccccCCCCCCCCCcccceeeEecCCCeEEEeccccc
Q 013476 381 ISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWT 438 (442)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~G~r~~t~D~~~~~~~~~~~~~~i~~~~~~~~~~~gg~~~ 438 (442)
+.+.+ .+...++...+.+..|+.+-. .-..++.++.-+.-|++.-..|.|+
T Consensus 234 l~~~~--~~~~~~~~~~~~~~ip~~~~~-----~~~~~~v~lvGDAAg~v~P~tG~GI 284 (388)
T TIGR02023 234 LRRRA--GLDGGQTIRREAAPIPMKPRP-----RWDFGRAMLVGDAAGLVTPASGEGI 284 (388)
T ss_pred HHHhh--CCCCceEeeeeeEeccccccc-----cccCCCEEEEeccccCcCCcccccH
Confidence 44443 133333444455666663321 1111234444445666665555554
No 90
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.52 E-value=2.9e-13 Score=130.76 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=52.5
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++...+.+.|.+.+.+.+...+++++|+++..++++ ++ |++ .++ .++.||.||.|+|.+| .+.+.+++..
T Consensus 108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--~~-v~~---~~g--~~~~a~~vI~AdG~~S-~vr~~~g~~~ 177 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNITRFGDEAESVRPREDE--VT-VTL---ADG--TTLSARLVVGADGRNS-PVREAAGIGV 177 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe--EE-EEE---CCC--CEEEEeEEEEecCCCc-hhHHhcCCCc
Confidence 455678888888888775433889999999887753 32 443 233 3789999999999999 5888887764
No 91
>PRK06126 hypothetical protein; Provisional
Probab=99.52 E-value=2.9e-12 Score=129.13 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=58.4
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++...+...|.+.+++. |++|+++++++++..+++ .|+ +++.+..+|+..+++||+||.|+|.+| .+++.+|+..
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S-~VR~~lgi~~ 198 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD--GVT-ATVEDLDGGESLTIRADYLVGCDGARS-AVRRSLGISY 198 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC--eEE-EEEEECCCCcEEEEEEEEEEecCCcch-HHHHhcCCcc
Confidence 44456777888888765 899999999999998875 555 555543456556899999999999999 5888888764
No 92
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.51 E-value=8.8e-13 Score=127.53 Aligned_cols=118 Identities=22% Similarity=0.226 Sum_probs=76.0
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~ 308 (442)
++...+...|.+.+++.|++++++++|+++..+++ .++ |++ .+|. ++.||.||.|+|.+| .+.+.+|+..+
T Consensus 110 v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~---~~g~--~~~a~~vV~AdG~~S-~vr~~~g~~~~ 180 (392)
T PRK08773 110 VENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD--RVR-LRL---DDGR--RLEAALAIAADGAAS-TLRELAGLPVS 180 (392)
T ss_pred EEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC--eEE-EEE---CCCC--EEEeCEEEEecCCCc-hHHHhhcCCce
Confidence 45577888999999999999999999999988764 442 443 2343 789999999999999 68888887653
Q ss_pred CcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEEccC
Q 013476 309 PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTT 357 (442)
Q Consensus 309 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~g~~ 357 (442)
...++.++....++...+... ..+....+++ .++++|.. +...+...
T Consensus 181 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~g-~~~~lP~~~~~~~~~w~ 228 (392)
T PRK08773 181 RHDYAQRGVVAFVDTEHPHQA-TAWQRFLPTG-PLALLPFADGRSSIVWT 228 (392)
T ss_pred EEEeccEEEEEEEEccCCCCC-EEEEEeCCCC-cEEEEECCCCceEEEEE
Confidence 333445555544443222211 1222223344 46677864 44434333
No 93
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.51 E-value=2.1e-12 Score=125.80 Aligned_cols=76 Identities=17% Similarity=0.074 Sum_probs=53.3
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCC-CCeEEEEEEEEC----CCCceEEEEcCEEEEccCCChHHHhhh
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNN----LSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~-g~~v~gV~~~~~----~~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
.++...|-..|.+.+.+.|++++.. .++++..+.+ + ..+.|.+.+. .+|+..++.||.||.|+|..| .+.+.
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~ 204 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPN-GPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKD 204 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCC-CcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHH
Confidence 4677788889999999999999765 5777764321 1 2223555431 014445799999999999998 68888
Q ss_pred hCCC
Q 013476 303 ADQN 306 (442)
Q Consensus 303 ~g~~ 306 (442)
++..
T Consensus 205 lg~~ 208 (450)
T PLN00093 205 IDAG 208 (450)
T ss_pred hCCC
Confidence 7764
No 94
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=8.2e-13 Score=110.05 Aligned_cols=68 Identities=26% Similarity=0.373 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCC---ceEEEEcCEEEEccCCChH
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g---~~~~i~a~~VVlAtG~~s~ 297 (442)
.++..++..|+..+.+.|++|+..+.|++++..++- +|+||.+.=. ..+ ....++|++||.|||.-+.
T Consensus 106 ~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~ 179 (262)
T COG1635 106 ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE 179 (262)
T ss_pred ecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence 466788999999999999999999999999876655 7999886410 000 2357999999999998773
No 95
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.50 E-value=2.3e-12 Score=129.46 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
+....+.+.|.+.+.+. |++++++++|++++++++ .|+ |++++ .+|+..+++||.||.|+|.+| .+.+.+|+..
T Consensus 110 ~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~-v~~~~-~~G~~~~i~ad~vVgADG~~S-~vR~~lg~~~ 184 (538)
T PRK06183 110 FHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVT-VTLTD-ADGQRETVRARYVVGCDGANS-FVRRTLGVPF 184 (538)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEE-EEEEc-CCCCEEEEEEEEEEecCCCch-hHHHHcCCee
Confidence 34456667777777765 999999999999999875 443 45543 255556899999999999999 5888887754
No 96
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.50 E-value=9.2e-13 Score=139.03 Aligned_cols=192 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC-CCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHH
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS-GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (442)
++.++||||||+|++||+||+++++.|++|+||||..... +++....+.+... .. . ...+.+.+.+.....
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~--~~----~--~~ds~e~~~~Dt~~~ 81 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNA--VI----P--GKAEPEDYVAEITRA 81 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcc--cC----C--CccCHHHHHHHHHhh
Confidence 3556999999999999999999999999999999997522 2221111111000 00 0 001111111111110
Q ss_pred HHHHHhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeC
Q 013476 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (442)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 226 (442)
.. .+ +.......+...+.+..+|+. .+|++.....+..... ..+ . . .+.+..
T Consensus 82 g~------gl---------~d~~~v~~~~~~a~~~i~~L~-~~Gv~f~~~~~G~~~~---~~~----~--~-~~~~~~-- 133 (897)
T PRK13800 82 ND------GI---------VNQRTVYQTATRGFAMVQRLE-RYGVKFEKDEHGEYAV---RRV----H--R-SGSYVL-- 133 (897)
T ss_pred cC------CC---------CCHHHHHHHHHhHHHHHHHHH-HcCCceeeCCCCCEee---eee----c--c-CCCccc--
Confidence 00 00 011111222333445667775 5777622211110000 000 0 0 000000
Q ss_pred cccChHHHHHHHHHHHHHc----CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALA----GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~----Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+.-....+...|.+.+++. ++++..++.+.+|+.++ | +|+||.+.+..+|+...+.||.||+|||+++.
T Consensus 134 ~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 134 PMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-G-RAVGAAALNTRTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred cCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-C-EEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence 0011244556666666544 67888888888988765 6 99999987645777778999999999999884
No 97
>PRK06834 hypothetical protein; Provisional
Probab=99.48 E-value=7.5e-12 Score=123.51 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCC
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~ 309 (442)
....+...|.+.+++.|++++++++++++.+++++ |. |++ .++ .+++||+||.|+|.+| .+.+.+|+..+.
T Consensus 98 ~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~-v~~---~~g--~~i~a~~vVgADG~~S-~vR~~lgi~~~g 168 (488)
T PRK06834 98 WQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VD-VEL---SDG--RTLRAQYLVGCDGGRS-LVRKAAGIDFPG 168 (488)
T ss_pred cHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EE-EEE---CCC--CEEEeCEEEEecCCCC-CcHhhcCCCCCC
Confidence 33567778888888889999999999999998753 32 333 233 3799999999999999 688888877543
No 98
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.48 E-value=6.4e-13 Score=129.25 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=55.5
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
+....+.+.|.+.+++.|++++++++|++++.++ + ++.++.. ++ .++.||.||+|+|..+ .|.+.+|+.
T Consensus 105 v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g-~v~~v~~----~g--~~i~A~~VI~A~G~~s-~l~~~lgl~ 173 (428)
T PRK10157 105 VLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-G-KVVGVEA----DG--DVIEAKTVILADGVNS-ILAEKLGMA 173 (428)
T ss_pred eEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-C-EEEEEEc----CC--cEEECCEEEEEeCCCH-HHHHHcCCC
Confidence 4556788889999999999999999999998876 5 6655542 22 3789999999999977 688887765
No 99
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.48 E-value=6.2e-12 Score=121.28 Aligned_cols=76 Identities=25% Similarity=0.175 Sum_probs=53.9
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECC----CCceEEEEcCEEEEccCCChHHHhhh
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNL----SGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~----~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
.++...+-+.|.+.+.+.|++++.++ +.++.... .+ ...+|++.... +|+...++||.||.|+|..| .+.+.
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~ 165 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADAD-DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKE 165 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCC-ceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHH
Confidence 45667788889999999999998775 77775421 12 44456553211 14445899999999999999 68888
Q ss_pred hCCC
Q 013476 303 ADQN 306 (442)
Q Consensus 303 ~g~~ 306 (442)
+|..
T Consensus 166 ~g~~ 169 (398)
T TIGR02028 166 IDAG 169 (398)
T ss_pred hCCC
Confidence 7754
No 100
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.48 E-value=1.6e-12 Score=126.44 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=73.6
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+...|.+.+.+.|++++++++|++++.+++ .+. |++ .+| ..+.||.||.|+|.+| .+.+.+|+..
T Consensus 107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~---~~g--~~~~ad~vI~AdG~~S-~vr~~~g~~~ 177 (403)
T PRK07333 107 MVENRVLINALRKRAEALGIDLREATSVTDFETRDE--GVT-VTL---SDG--SVLEARLLVAADGARS-KLRELAGIKT 177 (403)
T ss_pred EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EEE-EEE---CCC--CEEEeCEEEEcCCCCh-HHHHHcCCCc
Confidence 456678899999999989999999999999988774 332 333 233 3789999999999998 5888888764
Q ss_pred CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEE
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVA 354 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~ 354 (442)
....++..+....++....... ........++ .++++|.. +...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g-~~~~~Pl~~~~~~~ 223 (403)
T PRK07333 178 VGWDYGQSGIVCTVEHERPHGG-RAEEHFLPAG-PFAILPLKGNRSSL 223 (403)
T ss_pred ccccCCCEEEEEEEEcCCCCCC-EEEEEeCCCC-ceEEeECCCCCeEE
Confidence 3233344444443332221111 1111213444 35677864 44433
No 101
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.47 E-value=3.6e-12 Score=122.69 Aligned_cols=69 Identities=23% Similarity=0.200 Sum_probs=57.1
Q ss_pred ccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
.+....+...|.+.+.+.+ ++++++++|+.+..+++ .|+ |++.. +|+ ++.||.||.|.|.+| .+++.++
T Consensus 100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~-v~l~~--dG~--~~~a~llVgADG~~S-~vR~~~~ 169 (387)
T COG0654 100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVT-VTLSF--DGE--TLDADLLVGADGANS-AVRRAAG 169 (387)
T ss_pred EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceE-EEEcC--CCc--EEecCEEEECCCCch-HHHHhcC
Confidence 3455778899999998876 99999999999999885 666 66641 444 899999999999999 7888888
No 102
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.47 E-value=2e-12 Score=127.10 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=99.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHH-HHHHHHHHHH
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVF-HALEERKQVI 150 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (442)
.||||||+|++|++||+.|+++|++|+||||... .+++..+.+.+.... . ..++.+... +.+.. ...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~~s~~a~ggi~~~~-------~--~~ds~e~~~~d~~~~-~~~- 69 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KSNSYLAQAGIAFPI-------L--EGDSIRAHVLDTIRA-GKY- 69 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcHHHcCCccccc-------C--CCCcHHHHHHHHHHH-hcC-
Confidence 6999999999999999999999999999999853 222222222111100 0 011111111 11111 000
Q ss_pred HhCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccC
Q 013476 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (442)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 230 (442)
. ........+...+.+..+|+. ..|++ +... . .... ..+...+... ...
T Consensus 70 -----~---------~d~~~v~~~~~~~~~~i~~L~-~~Gv~-f~~~---~---~~~g-------~~~~r~~~~~--~~~ 118 (466)
T PRK08401 70 -----I---------NDEEVVWNVISKSSEAYDFLT-SLGLE-FEGN---E---LEGG-------HSFPRVFTIK--NET 118 (466)
T ss_pred -----C---------CCHHHHHHHHHHHHHHHHHHH-HcCCC-cccC---C---CcCC-------ccCCeEEECC--CCc
Confidence 0 001111122233345666765 46665 2110 0 0000 0111111111 112
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l 299 (442)
...++..|.+.+++.|++++.+ .+++|..++ + +|+||.+. + ..+.+|.||+|||+++...
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g-~v~Gv~~~----g--~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN-G-KAYGVFLD----G--ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-C-EEEEEEEC----C--EEEEeCeEEECCCcCcCCC
Confidence 3568889999999999999865 899988765 6 89998762 2 3689999999999999654
No 103
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.47 E-value=4.7e-12 Score=122.38 Aligned_cols=70 Identities=20% Similarity=0.122 Sum_probs=54.3
Q ss_pred ccChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
.++...+...|.+.+++.| ++++ +++++++..+++ .+. |++. +| .+++||.||.|+|.+|. +.+.++..
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~--~~~-v~~~---~g--~~~~a~~vI~adG~~S~-vr~~~~~~ 176 (388)
T PRK07608 107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD--AAT-LTLA---DG--QVLRADLVVGADGAHSW-VRSQAGIK 176 (388)
T ss_pred EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC--eEE-EEEC---CC--CEEEeeEEEEeCCCCch-HHHhcCCC
Confidence 3566788899999998887 9998 999999987764 332 4442 33 37999999999999994 88888766
Q ss_pred C
Q 013476 307 V 307 (442)
Q Consensus 307 ~ 307 (442)
.
T Consensus 177 ~ 177 (388)
T PRK07608 177 A 177 (388)
T ss_pred c
Confidence 4
No 104
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.47 E-value=5.4e-13 Score=112.05 Aligned_cols=67 Identities=28% Similarity=0.333 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CC---CceEEEEcCEEEEccCCCh
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LS---GKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~---g~~~~i~a~~VVlAtG~~s 296 (442)
.++..++..|...+.+.|++|+..+.|+++...++. ||.||.+.-. .. =....++||.||-|||.-+
T Consensus 93 ~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~-rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 93 ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDD-RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSC-EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCC-eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 567788899999888899999999999999876645 9999987521 01 1246899999999999866
No 105
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.47 E-value=1.5e-11 Score=118.85 Aligned_cols=163 Identities=16% Similarity=0.104 Sum_probs=86.2
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+.+.|.+.+.+.|++++ +++|+.+..+++ ....|++. +| .+++|+.||.|+|.++ .+.+.. ...
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~--~~~~v~~~---~g--~~~~a~~VI~A~G~~s-~~~~~~-~~~ 150 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV--ALSTVYCA---GG--QRIQARLVIDARGFGP-LVQYVR-FPL 150 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC--ceeEEEeC---CC--CEEEeCEEEECCCCch-hccccc-CCC
Confidence 46778899999999998999986 668988887633 33334442 33 3799999999999987 332111 111
Q ss_pred CCcccCCCeeEEEeCCCCCCCCceEEeee--cC-------CCc--EEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHH
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPK--TK-------DGR--VVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQ 375 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-------~~~--~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~ 375 (442)
...+....|..+.++...........+.. .. ... ++|++|.. +...++.+... .......+.++
T Consensus 151 ~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~----~~~~~~~~~~~ 226 (388)
T TIGR01790 151 NVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA----DRPALPRDRLR 226 (388)
T ss_pred CceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc----CCCCCCHHHHH
Confidence 11223344555555432211112222211 11 122 78999975 45666544311 11223344444
Q ss_pred HHHHHhhhhcCCCCCCCCeeeeeeecccccc
Q 013476 376 FILDAISDYLNVKVRRTDVLSAWSGIRPLAM 406 (442)
Q Consensus 376 ~~~~~~~~~~~~~l~~~~~~~~~~G~r~~t~ 406 (442)
+.+....+.+ .+...++.+.-.|+.|+..
T Consensus 227 ~~l~~~~~~~--g~~~~~i~~~~~~~iP~~~ 255 (388)
T TIGR01790 227 QRILARLNAQ--GWQIKTIEEEEWGALPVGL 255 (388)
T ss_pred HHHHHHHHHc--CCeeeEEEeeeeEEEeccc
Confidence 3333322222 2222334444457778854
No 106
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.47 E-value=1.9e-12 Score=126.53 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..++..|.+.+++.|++|+++++|++|+.++ ++ +|+||.... ....++||.||+|||+++.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g-~v~gv~~~~----~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDG-AHDGPLTTV----GTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCC-eEEEEEEcC----CcEEEEcCEEEEcCCCccc
Confidence 4688899999999999999999999999873 46 898887642 2257899999999999875
No 107
>PRK08013 oxidoreductase; Provisional
Probab=99.46 E-value=3.2e-12 Score=123.81 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=54.5
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
+....+...|.+.+.+. |++++++++++++++++++ +. |.+ .+| .+++||.||.|+|.+| .+++.++++.
T Consensus 108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~-v~~---~~g--~~i~a~lvVgADG~~S-~vR~~~~~~~ 178 (400)
T PRK08013 108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AF-LTL---KDG--SMLTARLVVGADGANS-WLRNKADIPL 178 (400)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EE-EEE---cCC--CEEEeeEEEEeCCCCc-HHHHHcCCCc
Confidence 44567788888888875 8999999999999887753 32 333 234 3799999999999999 7888888764
No 108
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.46 E-value=5.9e-12 Score=113.31 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=56.6
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
++...+++.|.+.+... +|++. +-.|.+|..++ | -|.||+.++ +.|+..+..|...|+|.|-|| ++++.+.
T Consensus 144 FhnGRFvq~lR~ka~slpNV~~e-eGtV~sLlee~-g-vvkGV~yk~-k~gee~~~~ApLTvVCDGcfS-nlRrsL~ 215 (509)
T KOG1298|consen 144 FHNGRFVQRLRKKAASLPNVRLE-EGTVKSLLEEE-G-VVKGVTYKN-KEGEEVEAFAPLTVVCDGCFS-NLRRSLC 215 (509)
T ss_pred eeccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhcc-C-eEEeEEEec-CCCceEEEecceEEEecchhH-HHHHHhc
Confidence 44567888998877665 88885 45688888877 6 999999998 555567888999999999999 6877764
No 109
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.46 E-value=9.9e-12 Score=118.83 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=94.3
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...|-+.+.+.+. .+..++.++.|++|..++++ ..|++ .+|. .++|+.||.|.|..+. ....
T Consensus 83 ~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~---~~v~~---~~g~--~i~a~~VvDa~g~~~~-~~~~----- 147 (374)
T PF05834_consen 83 MIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDG---VLVVL---ADGR--TIRARVVVDARGPSSP-KARP----- 147 (374)
T ss_pred EEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCce---EEEEE---CCCC--EEEeeEEEECCCcccc-cccc-----
Confidence 5677888889999888 55566788999999887743 12333 2443 8999999999995443 1111
Q ss_pred CCcccCCCeeEEEeCCC-CCCCCceEEe----eec-CCCcEEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHH-HHHH
Q 013476 308 QPMICPSSGVHIVLPDY-YSPEGMGLIV----PKT-KDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQ-FILD 379 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~----~~~-~~~~~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 379 (442)
.......|..+.++.. ..+.. ...+ ++. ....++|++|.. ++.++..|.-- ..+....+.++ .+.+
T Consensus 148 -~~~Q~f~G~~v~~~~~~f~~~~-~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs----~~~~~~~~~~~~~l~~ 221 (374)
T PF05834_consen 148 -LGLQHFYGWEVETDEPVFDPDT-ATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFS----PRPALPEEELKARLRR 221 (374)
T ss_pred -cccceeEEEEEeccCCCCCCCc-eEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEc----CCCCCCHHHHHHHHHH
Confidence 1122334555555443 22322 2222 111 234689999975 56777655421 12223444444 4445
Q ss_pred HhhhhcCCCCCCCCeeeeeeeccccccC
Q 013476 380 AISDYLNVKVRRTDVLSAWSGIRPLAMD 407 (442)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~G~r~~t~D 407 (442)
++.. + .+...+|.+.-.|+.||+..
T Consensus 222 ~l~~-~--g~~~~~i~~~E~G~IPm~~~ 246 (374)
T PF05834_consen 222 YLER-L--GIDDYEILEEERGVIPMTTG 246 (374)
T ss_pred HHHH-c--CCCceeEEEeecceeecccC
Confidence 5555 3 56667788888999999654
No 110
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.45 E-value=2.6e-11 Score=123.15 Aligned_cols=78 Identities=22% Similarity=0.208 Sum_probs=57.0
Q ss_pred cChHHHHHHHHHHHHHcC--ceEecCeEEEEEEEcCC-CCeEEEEEEEEC---CCCceEEEEcCEEEEccCCChHHHhhh
Q 013476 229 MNDSRLNVGLALTAALAG--AAVLNHAEVISLIKDEA-SNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~G--v~i~~~~~v~~l~~~~~-g~~v~gV~~~~~---~~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
++...+.+.|.+.+.+.| +++.++++++++.++++ ++.|+ |++++. .+|+..+++||+||-|.|..| .+++.
T Consensus 138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S-~VR~~ 215 (634)
T PRK08294 138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARS-RVRKA 215 (634)
T ss_pred eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCch-HHHHh
Confidence 455567788888888776 47889999999987642 21343 556541 134446899999999999999 78998
Q ss_pred hCCCCC
Q 013476 303 ADQNVQ 308 (442)
Q Consensus 303 ~g~~~~ 308 (442)
+|+...
T Consensus 216 lgi~~~ 221 (634)
T PRK08294 216 IGRELR 221 (634)
T ss_pred cCCCcc
Confidence 887653
No 111
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.45 E-value=5.4e-12 Score=123.14 Aligned_cols=70 Identities=23% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 232 ~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
..+.+.|.+.+.+. |+++++++++++++.+++ .+. |.+.+ ++...+++||.||.|+|.+| .+.+.+++..
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~~~-v~~~~--~~~~~~i~adlvIgADG~~S-~vR~~~~~~~ 191 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD--AAT-VTLEI--EGKQQTLQSKLVVAADGARS-PIRQAAGIKT 191 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eeE-EEEcc--CCcceEEeeeEEEEeCCCCc-hhHHHhCCCc
Confidence 45777888877775 799999999999988774 332 45542 23335799999999999999 6788777653
No 112
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.45 E-value=1.5e-12 Score=124.27 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=57.4
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
++...+.+.|.+.+++.|++++++++++++.++.+ .++.+ +.+..+|+..+++||.||.|.|.+| .+++.++..
T Consensus 108 ~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~-~~~~~~g~~~~i~adlvVgADG~~S-~vR~~l~~~ 181 (356)
T PF01494_consen 108 IDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVV-VRDGEDGEEETIEADLVVGADGAHS-KVRKQLGID 181 (356)
T ss_dssp EEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEE-EEETCTCEEEEEEESEEEE-SGTT--HHHHHTTGG
T ss_pred hhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccccc-cccccCCceeEEEEeeeecccCccc-chhhhcccc
Confidence 44567888999999999999999999999998885 55533 3343466666899999999999999 688877655
No 113
>PLN02463 lycopene beta cyclase
Probab=99.44 E-value=3.2e-11 Score=116.94 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=48.0
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+.++...+.+.|.+.+.+.|++++ +++|+++..+++ . ..|++. +| .++.|+.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~-~~V~~~---dG--~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--K-SLVVCD---DG--VKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--e-EEEEEC---CC--CEEEcCEEEECcCCCcC
Confidence 346778888999999988999996 679999988764 3 234443 33 37999999999999774
No 114
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.44 E-value=6.9e-12 Score=121.84 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=55.0
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++...+...|.+.+++.|++++++++++++..++++ +. |.+. +| .++.||.||.|+|.+| .+.+.+++..
T Consensus 109 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~-v~~~---~g--~~~~a~~vVgAdG~~S-~vR~~lg~~~ 178 (405)
T PRK05714 109 VENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WL-LTLA---DG--RQLRAPLVVAADGANS-AVRRLAGCAT 178 (405)
T ss_pred EEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EE-EEEC---CC--CEEEeCEEEEecCCCc-hhHHhcCCCc
Confidence 445677788888888889999999999999887753 32 3432 33 3789999999999999 6888887764
No 115
>PRK10015 oxidoreductase; Provisional
Probab=99.44 E-value=1.9e-12 Score=125.78 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=54.8
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
+....+-..|.+.+++.|++++.+++|+.+..++ + ++++|... ...+.|+.||+|+|..+ .+.+.+++.
T Consensus 105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~-~v~~v~~~------~~~i~A~~VI~AdG~~s-~v~~~lg~~ 173 (429)
T PRK10015 105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-N-KVTGVQAG------DDILEANVVILADGVNS-MLGRSLGMV 173 (429)
T ss_pred eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-C-EEEEEEeC------CeEEECCEEEEccCcch-hhhcccCCC
Confidence 4456777888899999999999999999998776 4 77766531 24799999999999987 577777653
No 116
>PRK07045 putative monooxygenase; Reviewed
Probab=99.44 E-value=2.4e-11 Score=117.36 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=52.7
Q ss_pred cChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh-hCCC
Q 013476 229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQN 306 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~-~g~~ 306 (442)
+....+.+.|.+.+.+ .|+++++++++++++.++++ .++.|... +|+ ++.+|.||.|+|.+| .+++. +++.
T Consensus 103 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~---~g~--~~~~~~vIgADG~~S-~vR~~~~~~~ 175 (388)
T PRK07045 103 IPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADG-TVTSVTLS---DGE--RVAPTVLVGADGARS-MIRDDVLRMP 175 (388)
T ss_pred ccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC-cEEEEEeC---CCC--EEECCEEEECCCCCh-HHHHHhhCCC
Confidence 3445677788887754 58999999999999987765 55556553 343 789999999999999 56664 4443
No 117
>PRK07190 hypothetical protein; Provisional
Probab=99.42 E-value=1.6e-11 Score=121.14 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~ 308 (442)
..+...|.+.+++.|++++++++|+++.+++++ ++ +.+ .+| .++.||+||.|+|..| .+.+.+|+...
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~-v~~---~~g--~~v~a~~vVgADG~~S-~vR~~lgi~f~ 176 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CL-TTL---SNG--ERIQSRYVIGADGSRS-FVRNHFNVPFE 176 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eE-EEE---CCC--cEEEeCEEEECCCCCH-HHHHHcCCCcc
Confidence 456667777888899999999999999998753 32 222 233 3899999999999998 78888887753
No 118
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.42 E-value=2.3e-12 Score=119.76 Aligned_cols=68 Identities=22% Similarity=0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHHc-CceEecCeEEEEEEEc-CCCCeEEEEEEEECCCCc--eEEEEcCEEEEccCC-ChHHHhhhhCC
Q 013476 236 VGLALTAALA-GAAVLNHAEVISLIKD-EASNRIIGARIRNNLSGK--EFDTYAKVVVNAAGP-FCDSVRKLADQ 305 (442)
Q Consensus 236 ~~l~~~~~~~-Gv~i~~~~~v~~l~~~-~~g~~v~gV~~~~~~~g~--~~~i~a~~VVlAtG~-~s~~l~~~~g~ 305 (442)
..++..+.++ |++|+.++.|++|..+ +++ +++||++.+ .++. ...+.+|.||+|+|. .|+.|+...|+
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~-~a~gV~~~~-~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGG-RATGVEYVD-NDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTST-EEEEEEEEE-TTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeecccc-ceeeeeeee-cCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 4444455555 9999999999999876 335 999999998 4444 456788999999998 57899988877
No 119
>PLN02985 squalene monooxygenase
Probab=99.41 E-value=3e-11 Score=119.65 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=57.3
Q ss_pred ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
.++...+.+.|.+.+.+. |++++.+ .++++..++ + .+.||++.+ .+|+..++.||.||.|+|.+| .+++.++..
T Consensus 143 ~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~-~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S-~vR~~l~~~ 217 (514)
T PLN02985 143 SFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-G-VIKGVTYKN-SAGEETTALAPLTVVCDGCYS-NLRRSLNDN 217 (514)
T ss_pred eeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-C-EEEEEEEEc-CCCCEEEEECCEEEECCCCch-HHHHHhccC
Confidence 455567888999888776 7998855 677877765 5 788898865 456556788999999999999 688877654
No 120
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.41 E-value=1.3e-13 Score=134.02 Aligned_cols=73 Identities=29% Similarity=0.376 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++|..+...|.+.+++.|+++++++.+.+++.++ + +|++|++.+ ..| ..++.||.||.|||. ..|....|.+.
T Consensus 87 ~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~-~i~~V~~~~-~~g-~~~i~A~~~IDaTG~--g~l~~~aG~~~ 159 (428)
T PF12831_consen 87 FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-G-RITGVIVET-KSG-RKEIRAKVFIDATGD--GDLAALAGAPY 159 (428)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-c-ccccccccc-ccc-ccccccccccccccc--ccccccccccc
Confidence 4455555666666778899999999999999987 5 999999986 345 578999999999996 36777777653
No 121
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.40 E-value=1.7e-11 Score=118.54 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=61.4
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++...+...|.+.+++. |++++++++++++..++++ + .|.+ .++ .+++||.||.|+|.+| .+.+.+++..
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~---~~g--~~~~a~~vI~AdG~~S-~vR~~~~~~~ 179 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--W-ELTL---ADG--EEIQAKLVIGADGANS-QVRQMAGIGV 179 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--E-EEEE---CCC--CEEEeCEEEEeCCCCc-hhHHHcCCCc
Confidence 45567788888888776 9999999999999887643 2 2333 233 3789999999999999 5888888765
Q ss_pred CCcccCCCeeEEEeC
Q 013476 308 QPMICPSSGVHIVLP 322 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~ 322 (442)
..+.++..+..+.++
T Consensus 180 ~~~~y~~~~~~~~~~ 194 (391)
T PRK08020 180 HGWQYRQSCMLISVK 194 (391)
T ss_pred cccCCCceEEEEEEE
Confidence 444445445444444
No 122
>PRK06847 hypothetical protein; Provisional
Probab=99.40 E-value=6.8e-11 Score=113.78 Aligned_cols=66 Identities=27% Similarity=0.296 Sum_probs=51.1
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
.++...+.+.|.+.+++.|++++++++++++..+++ .+ .|.+. +|+ ++.||.||.|+|.+|. +.+.
T Consensus 103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~-~v~~~---~g~--~~~ad~vI~AdG~~s~-~r~~ 168 (375)
T PRK06847 103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDD--GV-TVTFS---DGT--TGRYDLVVGADGLYSK-VRSL 168 (375)
T ss_pred cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EE-EEEEc---CCC--EEEcCEEEECcCCCcc-hhhH
Confidence 466678889999999889999999999999988764 33 23432 343 6899999999999994 4443
No 123
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.40 E-value=9.3e-12 Score=120.09 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=55.2
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++...+.+.|.+.+.+. |++++++++|+++..+++ .++ |.+ .+|. ++.||.||.|+|.+| .+.+.+++..
T Consensus 102 i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~~~-v~~---~~g~--~~~ad~vV~AdG~~S-~vr~~l~~~~ 172 (382)
T TIGR01984 102 VELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD--YVR-VTL---DNGQ--QLRAKLLIAADGANS-KVRELLSIPT 172 (382)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--eEE-EEE---CCCC--EEEeeEEEEecCCCh-HHHHHcCCCC
Confidence 56678899999999884 999999999999988774 332 333 2343 789999999999998 5888887654
No 124
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.40 E-value=7.8e-12 Score=120.80 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=55.1
Q ss_pred cChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
++...+...|.+.+.+.| ++++++++|+++..+++ .+. |+. .+|+ ++.+|.||.|+|.+| .+.+.++++.
T Consensus 103 i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~-v~~---~~g~--~~~~~~vi~adG~~S-~vr~~l~~~~ 173 (385)
T TIGR01988 103 VENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD--HVE-LTL---DDGQ--QLRARLLVGADGANS-KVRQLAGIPT 173 (385)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC--eeE-EEE---CCCC--EEEeeEEEEeCCCCC-HHHHHcCCCc
Confidence 455678899999998888 99999999999988764 442 443 3443 689999999999998 5888877654
No 125
>PLN02661 Putative thiazole synthesis
Probab=99.40 E-value=1e-11 Score=114.12 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEE------ECCCC---ceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIR------NNLSG---KEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~------~~~~g---~~~~i~a~~VVlAtG~~s 296 (442)
..+...|.+.+.+ .|++++.++.+.+|+.++ + ++.||.+. +..++ +...|+||.||+|||...
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-D-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-C-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 4556777776655 689999999999999887 5 99999863 10111 234789999999999765
No 126
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.39 E-value=5.6e-12 Score=124.03 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=51.5
Q ss_pred cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+++++..+...|.+.+++. |++++ ++.|+++..++ + +|.||.+. +| ..+.|+.||+|||.|++
T Consensus 95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-g-rV~GV~t~---dG--~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-G-RVVGVVTQ---DG--LEFRAKAVVLTTGTFLR 158 (618)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-C-EEEEEEEC---CC--CEEECCEEEEeeCcchh
Confidence 5788888999998888876 78874 67899998876 5 89999874 34 47999999999998764
No 127
>PRK11445 putative oxidoreductase; Provisional
Probab=99.38 E-value=2.2e-10 Score=108.87 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=69.6
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+...|.+ +.+.|+++++++.++++.+++++|. |.+. .+|+..+++||.||.|+|..| .+.+.++...
T Consensus 95 ~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~---v~~~--~~g~~~~i~a~~vV~AdG~~S-~vr~~l~~~~ 167 (351)
T PRK11445 95 NIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYH---VIFR--ADGWEQHITARYLVGADGANS-MVRRHLYPDH 167 (351)
T ss_pred cccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEE---EEEe--cCCcEEEEEeCEEEECCCCCc-HHhHHhcCCC
Confidence 3666677666666 4567899999999999988775422 3432 244445799999999999998 5777665432
Q ss_pred CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecCCcEEEccC
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTT 357 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~g~~ 357 (442)
. .....+....+...........++.....+.+.|.+|.++...+|..
T Consensus 168 ~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~~~~~~g~~ 215 (351)
T PRK11445 168 Q--IRKYVAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKDGYFIFGGA 215 (351)
T ss_pred c--hhhEEEEEEEecCCCCCCCcceEEeccCCCceEEEeCCCCcEEeccc
Confidence 1 11111111122221110111122211112346788888777777644
No 128
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.37 E-value=2.4e-11 Score=118.98 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=69.8
Q ss_pred cChHHHHHHHHHHHHHcC---ceEecCeEEEEEEEc-----CCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHh
Q 013476 229 MNDSRLNVGLALTAALAG---AAVLNHAEVISLIKD-----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~G---v~i~~~~~v~~l~~~-----~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~ 300 (442)
++...+...|.+.+.+.+ ++++++++|+++..+ +++ .-+.|++ .+| .+++||.||.|.|.+| .+.
T Consensus 114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~-~~v~v~~---~~g--~~i~a~llVgADG~~S-~vR 186 (437)
T TIGR01989 114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS-NWVHITL---SDG--QVLYTKLLIGADGSNS-NVR 186 (437)
T ss_pred EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC-CceEEEE---cCC--CEEEeeEEEEecCCCC-hhH
Confidence 445677788888887765 999999999999753 112 1122333 344 3799999999999999 688
Q ss_pred hhhCCCCCCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC-CcEEE
Q 013476 301 KLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVA 354 (442)
Q Consensus 301 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~ 354 (442)
+.+|+.....-+.....+..+.....+.....+....+++. +.++|.. +...+
T Consensus 187 ~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~-~~~lPl~~~~~~~ 240 (437)
T TIGR01989 187 KAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGP-IALLPLPDNNSTL 240 (437)
T ss_pred HHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCC-EEEeECCCCCEEE
Confidence 88887754333333333333332211111112222245554 5556864 34433
No 129
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.37 E-value=2.8e-11 Score=117.54 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 232 ~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
..+...|.+.+.+. |++++++++|+++..+++ .+ .|.+. +|+ +++||.||.|+|.+| .+.+.++++.
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~-~v~~~---~g~--~~~a~lvIgADG~~S-~vR~~~~~~~ 178 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGES--EA-WLTLD---NGQ--ALTAKLVVGADGANS-WLRRQMDIPL 178 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eE-EEEEC---CCC--EEEeCEEEEeCCCCC-hhHHHcCCCe
Confidence 45667777777664 799999999999988764 33 24442 343 799999999999998 6888887764
No 130
>PRK09126 hypothetical protein; Provisional
Probab=99.36 E-value=5.1e-11 Score=115.34 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 230 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
+...+.+.|.+.+.+ .|++++++++|++++.+++ .+ .|++. +| .++.||.||.|+|.+| .+.+.+|+..
T Consensus 108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~--~~-~v~~~---~g--~~~~a~~vI~AdG~~S-~vr~~~g~~~ 177 (392)
T PRK09126 108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD--GA-QVTLA---NG--RRLTARLLVAADSRFS-ATRRQLGIGA 177 (392)
T ss_pred eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC--eE-EEEEc---CC--CEEEeCEEEEeCCCCc-hhhHhcCCCc
Confidence 334566777777654 6999999999999988764 33 24443 34 3799999999999988 6888777653
No 131
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.36 E-value=1.2e-10 Score=117.28 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCC
Q 013476 230 NDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~ 308 (442)
....+...|.+.+.+. |++++++++++++..++++ ++ +.+++ .++ ..+++||.||.|+|.+| .+.+.+|+...
T Consensus 123 ~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--v~-v~~~~-~~g-~~~i~ad~vVgADG~~S-~vR~~lg~~~~ 196 (547)
T PRK08132 123 QQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG--VT-LTVET-PDG-PYTLEADWVIACDGARS-PLREMLGLEFE 196 (547)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE--EE-EEEEC-CCC-cEEEEeCEEEECCCCCc-HHHHHcCCCCC
Confidence 3345667777777775 7999999999999988753 32 34432 233 24789999999999999 58888887643
No 132
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=4.1e-11 Score=118.31 Aligned_cols=56 Identities=29% Similarity=0.331 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
..+.++|.+.++++|++|+++++|++|..++ | +.++++.. .+ ..+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g-~g~~~~~~---~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG-G-KGVGVRTS---DG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC-C-cceEEecc---cc--ceeccceeEecCch
Confidence 6899999999999999999999999999988 4 64444442 23 47889999998887
No 133
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.35 E-value=9e-11 Score=113.08 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 232 ~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
..+...|.+.+.+. |+++++++++++++.+++ .++ |.+. +| .+++||.||.|+|.+| .+.+.+++..
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~---~g--~~~~~~lvIgADG~~S-~vR~~~gi~~ 177 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNR-VTLE---SG--AEIEAKWVIGADGANS-QVRQLAGIGI 177 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEE-EEEC---CC--CEEEeeEEEEecCCCc-hhHHhcCCCc
Confidence 45666777776654 799999999999998775 332 4443 34 3899999999999999 6888877653
No 134
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.34 E-value=5.1e-11 Score=115.53 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 231 ~~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
...+.+.|.+.+.+ .|++++++++++++..+++ .+. |++. ++ .++.||.||.|+|.+| .+++.+++..
T Consensus 111 ~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~--~~~-v~~~---~g--~~~~a~~vI~AdG~~S-~vr~~~~~~~ 179 (395)
T PRK05732 111 LHDVGQRLFALLDKAPGVTLHCPARVANVERTQG--SVR-VTLD---DG--ETLTGRLLVAADGSHS-ALREALGIDW 179 (395)
T ss_pred hHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC--eEE-EEEC---CC--CEEEeCEEEEecCCCh-hhHHhhCCCc
Confidence 34566777777766 4899999999999987764 332 4442 33 3689999999999998 5888887664
No 135
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.34 E-value=1e-10 Score=112.30 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=53.6
Q ss_pred cChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
+....+...|.+.+.+.+ ++++++++++++..+++ .+. |.+. + . +++||.||.|+|.+| .+.+.++...
T Consensus 101 v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~-v~~~---~--~-~~~adlvIgADG~~S-~vR~~l~~~~ 170 (374)
T PRK06617 101 VKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND--YSI-IKFD---D--K-QIKCNLLIICDGANS-KVRSHYFANE 170 (374)
T ss_pred EEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--eEE-EEEc---C--C-EEeeCEEEEeCCCCc-hhHHhcCCCc
Confidence 455788889999888875 89999999999988775 332 4442 2 2 799999999999999 6888776653
No 136
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.34 E-value=3e-11 Score=120.17 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
..+++.|.+.++++|++|+++++|++|..++ + ++.+|++. +|+ .+.||.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~---~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-G-KAVGVKLA---DGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-C-cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence 5789999999999999999999999998876 5 88888874 333 689999999999875
No 137
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.33 E-value=3.4e-11 Score=112.78 Aligned_cols=187 Identities=20% Similarity=0.173 Sum_probs=110.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHH-HHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEERKQVIR 151 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 151 (442)
||+|||+|++||++|+.|++. ++|+||-|.....++|....|.+...+... ++.+. +.+.+..-..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~---------Ds~~~Hv~DTL~AG~g--- 75 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSED---------DSPELHVADTLAAGAG--- 75 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCC---------CCHHHHHHHHHHhcCC---
Confidence 999999999999999999998 999999999877777777766654332110 01111 1111111000
Q ss_pred hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND 231 (442)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 231 (442)
+ +....-......+....+++. .+|++..+..+..-...++. -+.....++-.+ ..-
T Consensus 76 ----l---------cD~~aV~~iv~~~~~ai~~Li-~~Gv~FDr~~~g~~~lt~Eg-------gHS~rRIlH~~~--~TG 132 (518)
T COG0029 76 ----L---------CDEEAVEFIVSEAPEAIEWLI-DLGVPFDRDEDGRLHLTREG-------GHSRRRILHAAD--ATG 132 (518)
T ss_pred ----C---------CcHHHHHHHHHhHHHHHHHHH-HcCCCCcCCCCCceeeeeec-------ccCCceEEEecC--Ccc
Confidence 0 000111111223334556654 56665222111100000000 001111111111 333
Q ss_pred HHHHHHHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..++..|.+.+++ .+++++.++.+.+|..+++. .+.||.+.+ ..++...+.|+.||||||+.+.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-~~~Gv~~~~-~~~~~~~~~a~~vVLATGG~g~ 197 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-GVAGVLVLN-RNGELGTFRAKAVVLATGGLGG 197 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc-eEeEEEEec-CCCeEEEEecCeEEEecCCCcc
Confidence 6788999998887 59999999999999998854 566999976 2224578999999999999874
No 138
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.33 E-value=6.2e-12 Score=110.53 Aligned_cols=197 Identities=20% Similarity=0.240 Sum_probs=105.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCccC-CCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHH
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSR-STKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIR 151 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (442)
-|||||+|.+||+++..+-..|-.|+|+||....+|.|.. ++|+-..+...++.......++. ++.+.+..... .
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~l--f~~Dtl~saks--k 86 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPEL--FVKDTLSSAKS--K 86 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHH--Hhhhhhhhccc--C
Confidence 5999999999999999999988889999999744444433 33333333333222111111111 01111111000 0
Q ss_pred hCCcccccCCCcccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccCCceeEEEeeCcccCh
Q 013476 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND 231 (442)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 231 (442)
..+.+. ......+....+|++.++++. ...+..-..+ -.|.- . ...+-+.|
T Consensus 87 ~~~eLm--------------~~La~~S~~AvewL~~ef~lk-ld~la~lgGH-SvpRT---------H----r~s~plpp 137 (477)
T KOG2404|consen 87 GVPELM--------------EKLAANSASAVEWLRGEFDLK-LDLLAQLGGH-SVPRT---------H----RSSGPLPP 137 (477)
T ss_pred CcHHHH--------------HHHHhcCHHHHHHHhhhcccc-hHHHHHhcCC-CCCcc---------c----ccCCCCCC
Confidence 000000 000111224456665545443 2111110000 01110 0 00111111
Q ss_pred -HHHHHHHHHH----HHHc--CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh---HHHhh
Q 013476 232 -SRLNVGLALT----AALA--GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC---DSVRK 301 (442)
Q Consensus 232 -~~l~~~l~~~----~~~~--Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s---~~l~~ 301 (442)
..++.+|... +.++ -++|..+++|++|..++ | +|.||+..+ .+|+...+.++.||+|||+|+ ..+++
T Consensus 138 gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~-g-kVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 138 GFEIVKALSTRLKKKASENPELVKILLNSKVVDILRNN-G-KVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLK 214 (477)
T ss_pred chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC-C-eEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHH
Confidence 2344444443 3333 38999999999999666 7 999999987 778778899999999999975 46777
Q ss_pred hhCC
Q 013476 302 LADQ 305 (442)
Q Consensus 302 ~~g~ 305 (442)
.++.
T Consensus 215 ey~p 218 (477)
T KOG2404|consen 215 EYGP 218 (477)
T ss_pred HhCh
Confidence 7654
No 139
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.33 E-value=1.8e-10 Score=111.27 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEE-cCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIK-DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~-~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
...+.+.|++.+.+.|++++++++++++.. +++ . ..|.+. .+|+..+++||.||.|.|.+| .+++.++..
T Consensus 102 ~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~--~-~~V~~~--~~G~~~~i~ad~vVgADG~~S-~vR~~~~~~ 172 (392)
T PRK08243 102 QTEVTRDLMAARLAAGGPIRFEASDVALHDFDSD--R-PYVTYE--KDGEEHRLDCDFIAGCDGFHG-VSRASIPAG 172 (392)
T ss_pred cHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC--c-eEEEEE--cCCeEEEEEeCEEEECCCCCC-chhhhcCcc
Confidence 346677888888888999999999999987 432 2 335553 255556899999999999999 677777654
No 140
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.32 E-value=4.4e-11 Score=116.62 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEc-CC--CCeEEEEEEEECCCCceEEE-EcCEEEEccCCChHH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKD-EA--SNRIIGARIRNNLSGKEFDT-YAKVVVNAAGPFCDS 298 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~-~~--g~~v~gV~~~~~~~g~~~~i-~a~~VVlAtG~~s~~ 298 (442)
..++..|.+.++++||+|+++++|++|..+ ++ + +|+||.+.....++...+ .+|.||+++|+++.+
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~-~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKK-TATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCce-EEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 678899999999999999999999999985 22 5 899999974112222333 459999999998743
No 141
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.31 E-value=3.6e-11 Score=116.53 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=49.5
Q ss_pred cChHHHHHHHHHHHHHcC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
++...+.+.|.+.+.+.+ ++++++++++++..+++ .+. |.. .+| .++.||.||.|+|.+|. +++.+
T Consensus 106 i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~-v~~---~~g--~~~~ad~vV~AdG~~S~-~r~~~ 172 (396)
T PRK08163 106 IHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD--GVT-VFD---QQG--NRWTGDALIGCDGVKSV-VRQSL 172 (396)
T ss_pred EEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC--ceE-EEE---cCC--CEEecCEEEECCCcChH-HHhhc
Confidence 556778888998888774 99999999999987764 332 333 233 37899999999999994 55443
No 142
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.30 E-value=3.4e-11 Score=116.08 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHHh
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSVR 300 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l~ 300 (442)
...+...|.+.+++.|++++++++|+++..+++ . ..|+. ++ ..+.||.||+|+|+++ -.++
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~-~~v~~----~~--~~i~ad~VIlAtG~~s~p~~gs~G~g~~la 174 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDN--G-FGVET----SG--GEYEADKVILATGGLSYPQLGSTGDGYEIA 174 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--e-EEEEE----CC--cEEEcCEEEECCCCcccCCCCCCcHHHHHH
Confidence 357888999999999999999999999977653 2 23433 22 3689999999999865 4788
Q ss_pred hhhCCCC
Q 013476 301 KLADQNV 307 (442)
Q Consensus 301 ~~~g~~~ 307 (442)
+.+|..+
T Consensus 175 ~~lG~~i 181 (400)
T TIGR00275 175 ESLGHTI 181 (400)
T ss_pred HHCCCCE
Confidence 8888764
No 143
>PRK07538 hypothetical protein; Provisional
Probab=99.29 E-value=1.9e-10 Score=112.05 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHHH-cC-ceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476 229 MNDSRLNVGLALTAAL-AG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~-~G-v~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~ 305 (442)
++...+...|++.+.+ .| .+++++++|+++..++++ .+ +.+.+..+|+..++.||.||.|.|.+| .+.+.++.
T Consensus 99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~--~~~~~~~~g~~~~~~adlvIgADG~~S-~vR~~l~~ 173 (413)
T PRK07538 99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TV--VFLGDRAGGDLVSVRGDVLIGADGIHS-AVRAQLYP 173 (413)
T ss_pred EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eE--EEEeccCCCccceEEeeEEEECCCCCH-HHhhhhcC
Confidence 5667788888888766 47 469999999999887754 33 333332244446899999999999999 57666643
No 144
>PRK07588 hypothetical protein; Provisional
Probab=99.27 E-value=1.9e-10 Score=111.19 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=45.6
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
+....+...|.+.+ +.|++++++++|++++++++ .|+ |++ .+|+ ++.+|.||.|+|.+| .+++.
T Consensus 100 i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~--~v~-v~~---~~g~--~~~~d~vIgADG~~S-~vR~~ 163 (391)
T PRK07588 100 LPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD--GVR-VTF---ERGT--PRDFDLVIGADGLHS-HVRRL 163 (391)
T ss_pred EEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC--eEE-EEE---CCCC--EEEeCEEEECCCCCc-cchhh
Confidence 33455666666654 34899999999999998775 443 343 2343 578999999999998 45554
No 145
>PRK06996 hypothetical protein; Provisional
Probab=99.27 E-value=3.5e-10 Score=109.50 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=69.0
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...+.+.|.+.+++.|++++++++++++..++++ |+ +.+.+ .+| ..+++||.||.|+|..+..+.+.+++..
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~-v~~~~-~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~ 185 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VT-LALGT-PQG-ARTLRARIAVQAEGGLFHDQKADAGDSA 185 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EE-EEECC-CCc-ceEEeeeEEEECCCCCchHHHHHcCCCc
Confidence 3455678899999999999999999999999887754 32 23322 122 2579999999999974435667666654
Q ss_pred CCcccCCCeeEEEeCCCCCCCCceEEeeecCCCcEEEEEecC
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL 349 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 349 (442)
....+........++........... ....++. +.++|..
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~G~-~~~lp~~ 225 (398)
T PRK06996 186 RRRDYGQTAIVGTVTVSAPRPGWAWE-RFTHEGP-LALLPLG 225 (398)
T ss_pred eeeecCCeEEEEEEEccCCCCCEEEE-EecCCCC-eEEeECC
Confidence 33333333333334332222221222 2234554 5556754
No 146
>PRK02106 choline dehydrogenase; Validated
Probab=99.26 E-value=2.6e-10 Score=115.12 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=50.4
Q ss_pred HHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhhhCCC
Q 013476 238 LALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN 306 (442)
Q Consensus 238 l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~~g~~ 306 (442)
++..+. ..+++|+.++.|++|+.++ + +++||++.+ ..+....+.+|.||+|+|++ ++.|+...|+.
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~~-~-~a~GV~~~~-~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFEG-K-RAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEeC-C-eEEEEEEEe-CCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 333333 4579999999999999986 5 999999976 33444456789999999995 67888777764
No 147
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.26 E-value=2.6e-10 Score=114.43 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC-ChHHHhhhhCCC
Q 013476 236 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLADQN 306 (442)
Q Consensus 236 ~~l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~-~s~~l~~~~g~~ 306 (442)
..++..++ +.|++|+.++.|.+|..++ + +++||++.+ .++....+.+|.||+|+|. .|+.|+...|+.
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~-ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFEG-N-RATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEecC-C-eEEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 34445454 4579999999999999986 5 999999875 2222334578999999999 788998877764
No 148
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.24 E-value=7e-10 Score=104.98 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhhhC
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLAD 304 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~~g 304 (442)
...+.++|.+.++++|++|+.+++|.++..++ + ++++|.+.+ +....+.||.||+|+|.| |+.|.+.++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~-~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-N-RVTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-C-eEEEEEecC---CccceEECCEEEEccCCCcCHHHHhhcC
Confidence 36788899999999999999999999999887 4 888877642 223589999999999999 999988764
No 149
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=4.2e-10 Score=113.12 Aligned_cols=185 Identities=14% Similarity=0.017 Sum_probs=106.5
Q ss_pred HHHHHHHHHCCCeEEEEeccCCCCCCccCCCCcccchhhhhHHhhhccCcchHHHHHHHHHHHHHHHHhCCcccccCCCc
Q 013476 84 CGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCM 163 (442)
Q Consensus 84 l~aA~~La~~G~~V~liEk~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (442)
|+||+++++.|++|+||||..+.+++|..+.|.+...... ....++.+.+.+........
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~------~~~~Ds~e~~~~D~~~~g~~-------------- 60 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIAS------ADPNDDWRWHMYDTVKGSDY-------------- 60 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCC------CCCCCCHHHHHHHHHHHhCC--------------
Confidence 5799999999999999999987666666555544322110 00112222222221111110
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhccCCCCcceecCHhhHHhhCCccccccccC-----CceeEEEeeCcccChHHHHHHH
Q 013476 164 TPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-----SLKGAVVYYDGQMNDSRLNVGL 238 (442)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l 238 (442)
.+.......+...+.+..+|+. .+|++.....+.......+... ... .....++..+ ..-..++..|
T Consensus 61 -~~d~~~v~~l~~~a~~~i~~L~-~~Gv~F~~~~~G~~~~~~~gg~----~~~~~~~~~~~R~~~~~~--~tG~~i~~~L 132 (570)
T PRK05675 61 -IGDQDAIEYMCSVGPEAVFELE-HMGLPFSRTETGRIYQRPFGGQ----SKDFGKGGQAARTCAAAD--RTGHALLHTL 132 (570)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeecccCcc----ccccccCCccceEEecCC--CCHHHHHHHH
Confidence 0111122233444556777775 5777622111100000000000 000 0001111111 1235788899
Q ss_pred HHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 239 ~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.+.+++.|++++.++.+++|+.+++| +|+||++.+..+|+...|+||.||||||+++.
T Consensus 133 ~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 133 YQGNLKNGTTFLNEWYAVDLVKNQDG-AVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHhccCCEEEECcEEEEEEEcCCC-eEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 99898899999999999999987557 99999986645777778999999999999985
No 150
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.22 E-value=9.7e-11 Score=109.42 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=47.7
Q ss_pred ccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
+++...+-..+.+.+++. +++|+ +.+|++|..++ + +|.||++. +| ..+.||.||+|||.|.
T Consensus 91 qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~-~v~GV~~~---~g--~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 91 QVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-G-KVKGVVTK---DG--EEIEADAVVLATGTFL 152 (392)
T ss_dssp EE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-T-EEEEEEET---TS--EEEEECEEEE-TTTGB
T ss_pred hccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-C-eEEEEEeC---CC--CEEecCEEEEeccccc
Confidence 577788888888888874 78885 68999999988 5 99999884 44 4899999999999944
No 151
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.21 E-value=4.8e-10 Score=112.01 Aligned_cols=57 Identities=25% Similarity=0.223 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
..+.++|.+.++++|++|+++++|++|..++ + ++++|++. +| ..+.||.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~-~~~~V~~~---~g--~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-G-RATAVHLA---DG--ERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-C-EEEEEEEC---CC--CEEECCEEEECCcHH
Confidence 5789999999999999999999999999876 5 88888764 33 368999999999873
No 152
>PRK06753 hypothetical protein; Provisional
Probab=99.21 E-value=1.8e-09 Score=103.84 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=47.8
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
++...+...|.+.+. +.+++++++++++..+++ .+. |+. .+| .++.+|.||.|.|.+| .+++.++..
T Consensus 95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~--~v~-v~~---~~g--~~~~~~~vigadG~~S-~vR~~~~~~ 161 (373)
T PRK06753 95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETD--KVT-IHF---ADG--ESEAFDLCIGADGIHS-KVRQSVNAD 161 (373)
T ss_pred ccHHHHHHHHHHhCC--CceEEECCEEEEEEecCC--cEE-EEE---CCC--CEEecCEEEECCCcch-HHHHHhCCC
Confidence 455666667766554 468999999999987764 332 333 234 3689999999999999 677776643
No 153
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.21 E-value=1.7e-09 Score=103.14 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=82.9
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCC
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~ 307 (442)
.++...|.+.+.+.+.. .++++++|+++ +.+ . |++. +| .++.|+.||.|.|..+..... .
T Consensus 85 ~I~r~~f~~~l~~~l~~---~i~~~~~V~~v--~~~--~---v~l~---dg--~~~~A~~VI~A~G~~s~~~~~-~---- 144 (370)
T TIGR01789 85 SMTSTRFHEGLLQAFPE---GVILGRKAVGL--DAD--G---VDLA---PG--TRINARSVIDCRGFKPSAHLK-G---- 144 (370)
T ss_pred EEEHHHHHHHHHHhhcc---cEEecCEEEEE--eCC--E---EEEC---CC--CEEEeeEEEECCCCCCCcccc-c----
Confidence 44455666666654432 36778999988 332 3 4442 33 379999999999987642222 1
Q ss_pred CCcccCCCeeEEEeCCCCCCCCceEEe--e--ecCCCcEEEEEecC-CcEEEccCCCCCCCCCCCCCCHHHHHHHH-HHh
Q 013476 308 QPMICPSSGVHIVLPDYYSPEGMGLIV--P--KTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFIL-DAI 381 (442)
Q Consensus 308 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~p~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~ 381 (442)
......|....+..+..+... ..+ + +....+++|++|.. +...+..|.- ...+..+.+.++.-+ +.+
T Consensus 145 --~~Q~f~G~~~r~~~p~~~~~~-~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~----s~~~~l~~~~l~~~l~~~~ 217 (370)
T TIGR01789 145 --GFQVFLGREMRLQEPHGLENP-IIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYY----ADDPLLDRNALSQRIDQYA 217 (370)
T ss_pred --eeeEEEEEEEEEcCCCCCCcc-EEEeeeccCCCCceEEEECcCCCCeEEEEEEec----cCCCCCCHHHHHHHHHHHH
Confidence 122333555555544333322 222 1 12334689999975 5666643321 112344555554433 333
Q ss_pred hhhcCCCCCCCCeeeeeeeccccccCC
Q 013476 382 SDYLNVKVRRTDVLSAWSGIRPLAMDP 408 (442)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~G~r~~t~D~ 408 (442)
.+. .+...++.+...|+.||+.++
T Consensus 218 ~~~---g~~~~~i~~~e~g~iPm~~~~ 241 (370)
T TIGR01789 218 RAN---GWQNGTPVRHEQGVLPVLLGG 241 (370)
T ss_pred HHh---CCCceEEEEeeeeEEeeecCC
Confidence 332 344455666667899998763
No 154
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.19 E-value=9.6e-10 Score=106.57 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=52.6
Q ss_pred cChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~ 305 (442)
++...+.+.|.+.+.+. |++++++++|+++.++++ .++ |++.+ .++ ..++.||.||.|.|.+| .+++.++.
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~--~v~-v~~~~-~~~-~~~~~adlvIgADG~~S-~vR~~~~~ 175 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN--SIT-ATIIR-TNS-VETVSAAYLIACDGVWS-MLRAKAGF 175 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC--ceE-EEEEe-CCC-CcEEecCEEEECCCccH-hHHhhcCC
Confidence 55678888898888764 899999999999988764 332 33332 122 24789999999999999 57776654
No 155
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.19 E-value=1.1e-10 Score=102.08 Aligned_cols=59 Identities=20% Similarity=0.119 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...+.+.|...+++.+++++++++|+++..++++|.| ++ .++ ..+.|+.||+|||.++.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v---~~---~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTV---TT---RDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEE---EE---TTS---EEEEEEEEE---SSCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEE---EE---Eec--ceeeeeeEEEeeeccCC
Confidence 3566778888888899999999999999999876544 44 233 57889999999998763
No 156
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.19 E-value=5.8e-10 Score=107.54 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
..+...|.+.+.+.|++++++++++.+...+.. . ..|.+.. +|+..+++||.||.|.|.+| .+++.++..
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~-~-~~V~~~~--~g~~~~i~adlvIGADG~~S-~VR~~l~~~ 172 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD-R-PYVTFER--DGERHRLDCDFIAGCDGFHG-VSRASIPAE 172 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC-c-cEEEEEE--CCeEEEEEeCEEEECCCCch-hhHHhcCcc
Confidence 456777888888889999999998888653321 2 3456642 45445799999999999999 577766543
No 157
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.18 E-value=4e-10 Score=109.98 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHcCce--EecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 231 DSRLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~--i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
...+.+.|.+.+++.|+. |+++++|+++..+++.|.| ++++ .++...+..+|.||+|||.++.
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V---~~~~-~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRV---QSKN-SGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEE---EEEc-CCCceEEEEcCEEEEeccCCCC
Confidence 467888888899989987 8999999999987654444 4432 1222335688999999998763
No 158
>PRK05868 hypothetical protein; Validated
Probab=99.18 E-value=3.1e-09 Score=101.74 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
..|.+.|.+ +...|++++++++|+++..+++ .|+ |.+. +|. +++||.||.|.|.+| .+++.+
T Consensus 105 ~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~---dg~--~~~adlvIgADG~~S-~vR~~~ 166 (372)
T PRK05868 105 DDLVELLYG-ATQPSVEYLFDDSISTLQDDGD--SVR-VTFE---RAA--AREFDLVIGADGLHS-NVRRLV 166 (372)
T ss_pred HHHHHHHHH-hccCCcEEEeCCEEEEEEecCC--eEE-EEEC---CCC--eEEeCEEEECCCCCc-hHHHHh
Confidence 445554443 3356899999999999987653 442 4443 343 689999999999999 576655
No 159
>PTZ00367 squalene epoxidase; Provisional
Probab=99.17 E-value=1.1e-09 Score=109.29 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.++||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46999999999999999999999999999999974
No 160
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.16 E-value=2.5e-10 Score=112.28 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=51.4
Q ss_pred cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
+++|+..+...|.+.+++. |++++ ...|+++..++++ +|.||.+. +| ..+.|+.||+|||.|.
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g-~V~GV~t~---~G--~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDND-EIKGVVTQ---DG--LKFRAKAVIITTGTFL 154 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCC-cEEEEEEC---CC--CEEECCEEEEccCccc
Confidence 6789999999999999888 77876 5578888776446 89999884 34 3799999999999994
No 161
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.16 E-value=4.6e-09 Score=104.68 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
..+.++|.+.++++|++|+++++|++|..++ + ++++|++.+..+++...+.||.||.++...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-G-RAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-C-eEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 6789999999999999999999999999887 4 788888754112223578999999999874
No 162
>PRK07208 hypothetical protein; Provisional
Probab=99.15 E-value=1.7e-09 Score=107.51 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
..+.+.|.+.+++.|++|+++++|++|..++++ .++.+...+ .+|....+.||.||.|+...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~-~v~~~~~~~-~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDG-RIAVVVVND-TDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCc-EEEEEEEEc-CCCCEEEEEcCEEEECCCHH
Confidence 468889999999999999999999999998765 455555432 23444568999999998874
No 163
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.14 E-value=5.4e-10 Score=99.06 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
+.++||+|||+|.+||.+|.+||++|++|+|+|+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 456999999999999999999999999999999984
No 164
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.13 E-value=7.4e-10 Score=108.12 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=51.2
Q ss_pred cccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhh
Q 013476 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~ 302 (442)
.+++...+-+.|.+.+++.||+++.+ .|+++..+++| .|++|+.. +| .+++||.||.|+|..+. |.+.
T Consensus 149 yhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g-~i~~v~~~---~g--~~i~ad~~IDASG~~s~-L~~~ 216 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDG-RITAVRLD---DG--RTIEADFFIDASGRRSL-LARK 216 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTS-EEEEEEET---TS--EEEEESEEEE-SGGG-C-CCCC
T ss_pred EEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCC-CEEEEEEC---CC--CEEEEeEEEECCCccch-hhHh
Confidence 35778899999999999999999877 58888888777 89888874 33 48999999999998773 4443
No 165
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.09 E-value=1e-08 Score=101.10 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 231 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
+..+.+.|.+.+++.|++|+++++|++|..+++| +|++|++.+...++...+.||.||+|+...
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~-~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDG-SVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCC-CEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 4678899999998899999999999999876666 898998864111112268999999999763
No 166
>PRK07236 hypothetical protein; Provisional
Probab=99.08 E-value=2.6e-09 Score=103.05 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
++..||+|||||++||++|+.|++.|++|+|+||.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 556899999999999999999999999999999985
No 167
>PLN02785 Protein HOTHEAD
Probab=99.05 E-value=4e-09 Score=105.87 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=48.6
Q ss_pred HHHHHHHcCceEecCeEEEEEEEcCC---CCeEEEEEEEECCCCceEEE-----EcCEEEEccCC-ChHHHhhhhCCC
Q 013476 238 LALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDT-----YAKVVVNAAGP-FCDSVRKLADQN 306 (442)
Q Consensus 238 l~~~~~~~Gv~i~~~~~v~~l~~~~~---g~~v~gV~~~~~~~g~~~~i-----~a~~VVlAtG~-~s~~l~~~~g~~ 306 (442)
+...+...+++++.++.|++|..+++ + +++||++.+ .+|...+. .++.||+|+|+ .++.|+...|+.
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~-ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIG 301 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRP-RATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIG 301 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCCCCCc-eEEEEEEEE-CCCceEEEEeecccCceEEecccccCCHHHHHHcCCC
Confidence 34445556899999999999998753 4 799999976 34543332 23789999999 467887776653
No 168
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.04 E-value=4.6e-09 Score=100.78 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..+.+.|.+.+++.|++++.+++|+++..++ + ++..+.. .+++...+.||.||+|+|.+..
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~-~V~~v~~---~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-G-RVTAVWT---RNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEe---eCCceEEEECCEEEEeCCCccc
Confidence 4567788888889999999999999998876 4 7776653 2344567999999999999754
No 169
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.03 E-value=3.5e-09 Score=104.29 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=49.7
Q ss_pred HcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEEEcCEEEEccCC-ChHHHhhhhCCC
Q 013476 244 LAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLADQN 306 (442)
Q Consensus 244 ~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~-~s~~l~~~~g~~ 306 (442)
..+++|+.++.|++|+.+++ + +|++|.+.+..+++..+++||.||||+|+ .+.+|+-..+..
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~-~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNES-EIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCc-eeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 34599999999999998753 4 89999998744677788999999999998 466777665543
No 170
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.7e-09 Score=99.12 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l 299 (442)
....+++.+.+.++..|+++.. ..|.++...++ ..-|.+. +. .++||.||+|||.....+
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~---~F~v~t~-----~~-~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG---PFKVKTD-----KG-TYEAKAVIIATGAGARKL 118 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc---eEEEEEC-----CC-eEEEeEEEECcCCcccCC
Confidence 3467888888999889999987 77777776552 2223332 22 399999999999977433
No 171
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.02 E-value=1.3e-08 Score=98.36 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..+.++|.+.+...|++++++++|.+|..++++ ++++|+.. +| ..++||.||.....+..
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g-~~~~V~~~---~G--e~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENG-KVCGVKSE---GG--EVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCC-eEEEEEEC---CC--cEEECCEEEECcccccc
Confidence 578999999999999999999999999988767 88888764 34 37899999986666543
No 172
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.02 E-value=2.5e-08 Score=100.26 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.+..+|+|||||++||++|+.|+++|++|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999974
No 173
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.00 E-value=2e-09 Score=98.20 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=61.4
Q ss_pred cChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC---CCC-------ceEEEEcCEEEEccCCC---
Q 013476 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG-------KEFDTYAKVVVNAAGPF--- 295 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~---~~g-------~~~~i~a~~VVlAtG~~--- 295 (442)
+.-..++.+|-+.+++.||+|+-+..+..+..+++| .|.||...+. ++| ++..+.|+..|+|-|..
T Consensus 180 v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edg-sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 180 VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDG-SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred EEHHHHHHHHHHHHHhhCceeccccchhheeEcCCC-cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 445789999999999999999999999999999888 9999987642 122 23468999999998875
Q ss_pred hHHHhhhhCCC
Q 013476 296 CDSVRKLADQN 306 (442)
Q Consensus 296 s~~l~~~~g~~ 306 (442)
+.++.+.++++
T Consensus 259 skqi~kkf~Lr 269 (621)
T KOG2415|consen 259 SKQIIKKFDLR 269 (621)
T ss_pred HHHHHHHhCcc
Confidence 45777777665
No 174
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.99 E-value=4.5e-09 Score=97.83 Aligned_cols=33 Identities=30% Similarity=0.553 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
|||+|||||++|+++|..|++.|.+|+|||+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 699999999999999999999999999999975
No 175
>PRK07233 hypothetical protein; Provisional
Probab=98.99 E-value=2.4e-08 Score=98.08 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
..+.+.|.+.+++.|++|+++++|++|+.+++ +++.+.. ++ ..+.||.||+|+...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~~~----~~--~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGVEV----DG--EEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEEEe----CC--ceEECCEEEECCCHH
Confidence 57889999999999999999999999998774 5654542 22 378999999999863
No 176
>PLN02612 phytoene desaturase
Probab=98.96 E-value=5.3e-08 Score=98.04 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
..++..|.+.+++.|++|+++++|++|..++++ ++++|++. +| ..+.||.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~v~~~---~G--~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDG-TVKHFLLT---NG--SVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCC-cEEEEEEC---CC--cEEECCEEEECCCH
Confidence 568889999998899999999999999987666 77777763 34 36899999999975
No 177
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.94 E-value=3.5e-08 Score=98.52 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHH-cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCC-ceEEEEcCEEEEccCCC-hHHHhhhhCCC
Q 013476 237 GLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQN 306 (442)
Q Consensus 237 ~l~~~~~~-~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g-~~~~i~a~~VVlAtG~~-s~~l~~~~g~~ 306 (442)
.++..+.+ .+.+|++++.|++|+.+++ ++++|++.....+ ....+.++.||+|+|.. |+.|+...|+.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGD--RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECC--eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 34444444 4699999999999999984 8999998752222 24456779999999995 67888777653
No 178
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.93 E-value=2.2e-08 Score=100.78 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~ 298 (442)
..++..|.+.+++.|++|+.++.+++|+.++ | +|+||++.+..+|+...+.||.||+|||+++..
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g-~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMED-G-ECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 5688899999999999999999999999865 7 999999865456776789999999999999853
No 179
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.92 E-value=4.6e-08 Score=96.73 Aligned_cols=39 Identities=38% Similarity=0.607 Sum_probs=35.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~ 107 (442)
+.+|||+|||||++|+.+|+.|++.|++|+|||+.. +++
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG 42 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccc
Confidence 456999999999999999999999999999999974 544
No 180
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.90 E-value=2.8e-08 Score=97.56 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=34.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
+|||+|||||++|++||+.|+++|++|+|+|+..+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG 38 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGG 38 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCc
Confidence 5999999999999999999999999999999975544
No 181
>PRK06370 mercuric reductase; Validated
Probab=98.88 E-value=4.4e-08 Score=96.83 Aligned_cols=42 Identities=33% Similarity=0.493 Sum_probs=37.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCc
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS 110 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s 110 (442)
+.+|||||||+|++|+++|+.|++.|++|+|||+..+++.+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~ 44 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCV 44 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCcee
Confidence 456999999999999999999999999999999987665543
No 182
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.88 E-value=3.6e-08 Score=96.82 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g 108 (442)
++|||+|||||++|++||+.|++.|++|+||||..+++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~ 39 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGT 39 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccc
Confidence 359999999999999999999999999999999765443
No 183
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.88 E-value=7.2e-09 Score=89.56 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.+|+|||+||+|++||+.|+++|.+|+|+||+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 579999999999999999999999999999986
No 184
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=6.1e-08 Score=95.67 Aligned_cols=38 Identities=34% Similarity=0.640 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc-CCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~-~~~~ 107 (442)
++|||+|||+|++|++||..|++.|++|+|||+. .+++
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG 40 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG 40 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence 4599999999999999999999999999999974 4443
No 185
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.87 E-value=2.1e-08 Score=100.30 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
..+...+.+.+++.|++++++++|.++..+++. . .|.+ .++ ..+.+|.||+|||...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~-~V~~---~~g--~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL--I-EVEL---ANG--AVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe--E-EEEE---CCC--CEEEcCEEEECCCCCc
Confidence 456778888888899999999999999887533 2 2333 233 3689999999999854
No 186
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.87 E-value=9.6e-08 Score=84.93 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC-hHHHhhh
Q 013476 233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKL 302 (442)
Q Consensus 233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~-s~~l~~~ 302 (442)
.+-+.|.+.+++.|+.+..+.+|.+....+ + +|+.|.+++ .....+.|+..|+|+|.| |+.|...
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~-~v~~i~trn---~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-G-RVTEIYTRN---HADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-C-eEEEEEecc---cccCCCChhHeeeeccccccccchhh
Confidence 445677778889999999999999999887 5 999999975 234689999999999994 6555554
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.86 E-value=3e-08 Score=99.79 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
.|||+|||||++|++||++|+++|++|+|||+...
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 49999999999999999999999999999999653
No 188
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.86 E-value=2.1e-07 Score=84.51 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
.++...+.+.++++|.+|+++++|+....+++| .|. |++++..+++..+++||.+.+|.|.
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v~-i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG-PVE-IEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCC-ceE-EEEEecCCCceeEEEeeEEEEEccC
Confidence 566778888888999999999999999999886 554 7788777888889999999999997
No 189
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.86 E-value=3.5e-08 Score=97.84 Aligned_cols=64 Identities=25% Similarity=0.183 Sum_probs=45.8
Q ss_pred cChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcCCC-----CeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 229 MNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEAS-----NRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 229 ~~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~~g-----~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.+..++.+.|...++..+. .|++||+|+++.+.++. |.| +.+ .+|+..+-..|+||+|+|.++.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V---~~~--~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEV---TTE--NDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEE---EET--TTTEEEEEEECEEEEEE-SSSC
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEE---Eee--cCCeEEEEEeCeEEEcCCCcCC
Confidence 3446788888888988775 68999999999886532 333 332 4555555667999999999874
No 190
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.85 E-value=2.1e-07 Score=91.89 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCceEecCeEEEEEEEcC--CCCe-EEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 233 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASNR-IIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~--~g~~-v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+.+.+.+.++++|++|+++++|++|..++ ++|+ |++|.+.+ .++ ...+.||+||+|+..+.
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~-~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEG-KKVIKADAYVAACDVPG 284 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCc-ceEEECCEEEECCChHH
Confidence 356778899999999999999999998864 3543 88888753 111 24589999999999864
No 191
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.85 E-value=1.8e-08 Score=96.77 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHcCc--eEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 230 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv--~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
+..++++.|...|+..+. .|.++++|..+.... +-|+| ..++ ..+.....-+|.||+|||-+.
T Consensus 88 ~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V---~~~~-~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 88 SHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRV---TTKD-NGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred CHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeE---EEec-CCcceeEEEeeEEEEcccCcC
Confidence 335788888888888764 788999999998876 35665 4443 122134677899999999996
No 192
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.84 E-value=1.3e-07 Score=92.32 Aligned_cols=70 Identities=23% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHH--cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEc-CEEEEccCC-ChHHHhhhhCCC
Q 013476 236 VGLALTAAL--AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGP-FCDSVRKLADQN 306 (442)
Q Consensus 236 ~~l~~~~~~--~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a-~~VVlAtG~-~s~~l~~~~g~~ 306 (442)
.++++.+.. .+..+..++.|++|..|..+-+..||+... +.++..+++| |-|||++|+ .|++|+-+.|+.
T Consensus 256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIG 329 (623)
T KOG1238|consen 256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVR-DGGKEHTVKARKEVILSAGAINSPQLLMLSGIG 329 (623)
T ss_pred hhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEe-cCceeeeecccceEEEeccccCCHHHHHHcCCC
Confidence 344444443 378888999999999985454899999875 3256667788 669999999 578998777764
No 193
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.84 E-value=3.8e-08 Score=92.04 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=35.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
.+.+||||||+|.+||++|+.|.+.|++|+|+|.++..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence 567999999999999999999999999999999997433
No 194
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.83 E-value=6.3e-08 Score=94.31 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=33.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLR-VGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~ 104 (442)
+..+||+|||||.+|+++|++|.++|.. ++|+||+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 4569999999999999999999999998 99999996
No 195
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.83 E-value=1e-07 Score=94.48 Aligned_cols=38 Identities=34% Similarity=0.651 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
..|||+|||||++|+++|..|++.|++|+|||+..+++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG 40 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGG 40 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCc
Confidence 36999999999999999999999999999999976544
No 196
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.83 E-value=1.2e-07 Score=92.50 Aligned_cols=65 Identities=8% Similarity=0.106 Sum_probs=46.3
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
.++...+...|.+.+. +..++++++|++|..++++ + .|... +|. ++.||.||.|+|.+| .+++.+
T Consensus 101 ~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~-~v~~~---~g~--~~~ad~vVgADG~~S-~vR~~l 165 (414)
T TIGR03219 101 SVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE--V-QVLFT---DGT--EYRCDLLIGADGIKS-ALRDYV 165 (414)
T ss_pred cCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc--E-EEEEc---CCC--EEEeeEEEECCCccH-HHHHHh
Confidence 3566778888877653 3567899999999987754 2 23332 343 689999999999999 455543
No 197
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=1.2e-07 Score=93.70 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.+|||+|||||.+|+.+|..|++.|++|+|||+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35999999999999999999999999999999974
No 198
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.7e-09 Score=98.52 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=48.4
Q ss_pred cccChHHHHHHHHHHHHHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 227 ~~~~~~~l~~~l~~~~~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.++|...+-..+.+.++.. +..++ ...|++|+.+++. +|.||++. +| ..+.|+.||++||-|..
T Consensus 95 aQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~-~v~GV~t~---~G--~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 95 AQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQ-RVVGVVTA---DG--PEFHAKAVVLTTGTFLR 159 (621)
T ss_pred hhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCC-eEEEEEeC---CC--CeeecCEEEEeeccccc
Confidence 4566667777887777765 77875 5678888886643 69999885 34 48999999999997764
No 199
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.82 E-value=1.5e-07 Score=86.78 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
+.+|||||||++||++|+.|++.|++|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4689999999999999999999999999999975
No 200
>PRK06116 glutathione reductase; Validated
Probab=98.82 E-value=7.9e-08 Score=94.70 Aligned_cols=37 Identities=38% Similarity=0.623 Sum_probs=34.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
+|||+|||||++|+++|+.|+++|++|+|||+..+++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 5999999999999999999999999999999975544
No 201
>PTZ00058 glutathione reductase; Provisional
Probab=98.81 E-value=7.4e-08 Score=96.19 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=36.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~ 109 (442)
..+|||||||+|.+|.++|..|++.|++|+||||..+++.|
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtC 86 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTC 86 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence 35699999999999999999999999999999998655433
No 202
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=1.3e-07 Score=93.58 Aligned_cols=38 Identities=39% Similarity=0.652 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
.+|||+|||||++|+++|..|+++|++|+||||..+++
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG 40 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGG 40 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 35999999999999999999999999999999987433
No 203
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=2e-07 Score=92.16 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=35.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCCc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTS 110 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~s 110 (442)
+|||+|||+|++|++||..|++.|++|+|||++.+++.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Confidence 5999999999999999999999999999999986655443
No 204
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.78 E-value=1.3e-07 Score=87.55 Aligned_cols=58 Identities=29% Similarity=0.500 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
..+..++.+.++++|.+|+++..|++|..|+ | +++||.+.+ | ..+.+|.||--++.|-
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-g-ka~GV~L~d---G--~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS-G-KAVGVRLAD---G--TEVRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccC-C-eEEEEEecC---C--cEEEeeeeecCCchHH
Confidence 5678899999999999999999999999988 7 999999964 4 3788899998888876
No 205
>PLN02507 glutathione reductase
Probab=98.78 E-value=2.7e-07 Score=91.62 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk 102 (442)
..+|||+|||+|.+|+.+|..|++.|++|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3459999999999999999999999999999997
No 206
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.77 E-value=6.4e-08 Score=96.68 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
..+...+.+.+++.|++++.+++|+++..+++. . .|.+ .++. .+.+|.+|+|||...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~-~v~~---~~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGL--I-VVTL---ESGE--VLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--E-EEEE---CCCC--EEEeCEEEECCCCCc
Confidence 346667777788889999999999999876633 2 2333 2333 689999999999853
No 207
>PRK10262 thioredoxin reductase; Provisional
Probab=98.76 E-value=1.1e-07 Score=89.39 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
+..+||+|||||++|++||..|+++|++|+|||+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 5679999999999999999999999999999997543
No 208
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.76 E-value=3e-07 Score=91.11 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk 102 (442)
.+|||+|||+|++|+++|++|++.|++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 359999999999999999999999999999998
No 209
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.75 E-value=8.3e-07 Score=87.85 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..+...+.+.+++.|+++++++++.++..+++ ++. +.. .+|+...+.+|.||+|+|...+
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v~-v~~---~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDD--QVV-YEN---KGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEE-EEE---eCCcEEEEEeCEEEEecCCccc
Confidence 34566777788889999999999999987663 443 332 2343357999999999998653
No 210
>PRK14694 putative mercuric reductase; Provisional
Probab=98.75 E-value=2.1e-07 Score=91.98 Aligned_cols=41 Identities=41% Similarity=0.626 Sum_probs=36.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g 108 (442)
....|||+|||||++|+++|..|++.|++|+|||++.+++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt 43 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT 43 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence 35679999999999999999999999999999999865443
No 211
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.75 E-value=2.6e-07 Score=86.07 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=57.4
Q ss_pred CcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
-|.-.-..++..+.+.+++.|++|+++|+|.+|+.+++ .+.+|...+ ...+.++.||+|.|..+.++..++
T Consensus 167 iGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~-----g~~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 167 IGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTK-----GEEIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred cCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccC-----CcEEecCEEEEccCcchHHHHHHH
Confidence 34445578889999999999999999999999999884 677777642 348999999999999776665443
No 212
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.75 E-value=2.3e-07 Score=91.12 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
++|||||||||++|+++|..|++.|++|+||||..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 46999999999999999999999999999999985
No 213
>PLN02487 zeta-carotene desaturase
Probab=98.75 E-value=2.5e-07 Score=92.35 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCceEecCeEEEEEEEcC--CCC-eEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 233 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASN-RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 233 ~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~--~g~-~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+.+.+.+.++++|++|+++++|.+|..++ +|+ +|+||++.. +++...+.+|.||+|++.+.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 478899999999999999999999999873 232 488998842 22334688999999999864
No 214
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.69 E-value=2.8e-08 Score=69.34 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=28.7
Q ss_pred EECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 76 VIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 76 VVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
|||||++||++|+.|+++|++|+|+|+.+..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999997443
No 215
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.66 E-value=3.1e-07 Score=76.27 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=28.4
Q ss_pred EEECCChHHHHHHHHHHHC-----CCeEEEEeccCCC
Q 013476 75 LVIGGGATGCGVALDAATR-----GLRVGLVEREDFS 106 (442)
Q Consensus 75 vVVGaG~aGl~aA~~La~~-----G~~V~liEk~~~~ 106 (442)
+|||+|+.|++++.+|.++ ..+|+|+|+...+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G 37 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFG 37 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcc
Confidence 5999999999999999988 4689999997664
No 216
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.66 E-value=5.2e-07 Score=87.21 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
..+.+.+.+.+++.|+++++++++++++.+++ . ..+.+++ +....+.+|.|++|+|.-
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~-v~v~~~~---g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDD--G-VLVTLED---GEGGTIEADAVLVAIGRK 271 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCC--e-EEEEEec---CCCCEEEeeEEEEccCCc
Confidence 56677888888888899999999999988774 3 3355543 333378999999999984
No 217
>PLN02546 glutathione reductase
Probab=98.65 E-value=6.4e-07 Score=89.61 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk 102 (442)
..+|||+|||+|.+|..+|..|++.|++|+|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3459999999999999999999999999999996
No 218
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.64 E-value=8.9e-07 Score=77.09 Aligned_cols=32 Identities=38% Similarity=0.740 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
||||||||++|+++|.+|++.|.+|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998864
No 219
>PRK09897 hypothetical protein; Provisional
Probab=98.62 E-value=9.4e-07 Score=87.45 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CeEEEEeccC-CCCCC
Q 013476 72 LDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGT 109 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~-~~~g~ 109 (442)
.+|+|||||.+|+++|.+|++.+ .+|+|+|+.. ++.|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 58999999999999999999864 4899999975 54443
No 220
>PRK13748 putative mercuric reductase; Provisional
Probab=98.61 E-value=9.4e-07 Score=89.70 Aligned_cols=39 Identities=38% Similarity=0.641 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g 108 (442)
.+|||||||||++|+++|..|++.|++|+|||++.+++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~ 135 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT 135 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence 469999999999999999999999999999999865443
No 221
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.59 E-value=1.5e-06 Score=86.06 Aligned_cols=33 Identities=39% Similarity=0.606 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
+|||||||+|.+|+.+|+.|++.|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 499999999999999999999999999999985
No 222
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.58 E-value=9.6e-07 Score=89.63 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.+|||+|||+|.+|..+|..|++.|++|+|||+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3699999999999999999999999999999975
No 223
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.58 E-value=2.2e-06 Score=89.65 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=42.0
Q ss_pred ccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 228 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
.+....+...|.+.+++.|++|+++++++++.. ..+.+|.||.|+|.+| .+++.+
T Consensus 93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--------------------~~~~~D~VVgADG~~S-~vR~~~ 147 (765)
T PRK08255 93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQA--------------------LAADADLVIASDGLNS-RIRTRY 147 (765)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------------------hhcCCCEEEEcCCCCH-HHHHHH
Confidence 356678999999999999999999988765421 1247899999999998 355543
No 224
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.55 E-value=2e-06 Score=85.00 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecc
Q 013476 70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERE 103 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~ 103 (442)
++|||+|||+|.+|..+|..|++. |++|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 9999999984
No 225
>PLN02529 lysine-specific histone demethylase 1
Probab=98.55 E-value=2.3e-06 Score=87.45 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...||+|||||++|++||..|+++|++|+|+|+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 34799999999999999999999999999999986
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.54 E-value=3e-06 Score=83.73 Aligned_cols=36 Identities=39% Similarity=0.630 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
.||+|||+|.+|+.+|..|+++|.+|+||||..+++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG 37 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGG 37 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCC
Confidence 489999999999999999999999999999987544
No 227
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.54 E-value=2.3e-06 Score=85.07 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|||+|||||++|++||..|+++|++|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 599999999999999999999999999999973
No 228
>PRK12831 putative oxidoreductase; Provisional
Probab=98.53 E-value=2.7e-06 Score=83.70 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
....||+|||||++|+++|++|++.|++|+|+|+...
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3458999999999999999999999999999999763
No 229
>PLN02676 polyamine oxidase
Probab=98.53 E-value=2.7e-06 Score=84.21 Aligned_cols=38 Identities=21% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSG 108 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~~~g 108 (442)
.+||+|||||++||+||++|+++|. +|+|+|++...+|
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 4899999999999999999999998 5999999973333
No 230
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.52 E-value=1.7e-06 Score=92.82 Aligned_cols=36 Identities=42% Similarity=0.578 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
..+||+|||||++|++||+.|++.|++|+|+|+...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999999999999999999999999999853
No 231
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.52 E-value=7.2e-07 Score=87.56 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
....||+|||+|++|+++|+.|++.|++|+|+|+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345899999999999999999999999999999986
No 232
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.51 E-value=2.6e-06 Score=87.77 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------C---------CCceEEEEcCEEEEccCCCh
Q 013476 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------~---------~g~~~~i~a~~VVlAtG~~s 296 (442)
..+.+++.|++|++++.+.++..+++| +|++|++... . +|+...+.+|.||+|.|--.
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p 584 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQG-HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP 584 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCCC-eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence 345677899999999999999876557 8999886421 1 23345799999999999654
No 233
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.49 E-value=4.7e-07 Score=95.74 Aligned_cols=35 Identities=29% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...+|+|||||+|||+||+.|++.|++|+|+|+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 35789999999999999999999999999999975
No 234
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.9e-06 Score=77.06 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
+.+.+.+.+.++++|+.|...+...++++-++| +. -|..++..+++...-..+.|+.|.|.-+ +.+.++++
T Consensus 238 qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g-~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~--~~~~l~L~ 308 (503)
T KOG4716|consen 238 QDMAELVAEHMEERGIKFLRKTVPERVEQIDDG-KL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA--LTDDLNLD 308 (503)
T ss_pred HHHHHHHHHHHHHhCCceeecccceeeeeccCC-cE-EEEeecccccccccchhhhhhhhhcccc--chhhcCCC
Confidence 566777778889999999998888899887776 53 3555543455555556799999999855 44555544
No 235
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.46 E-value=2.1e-06 Score=84.92 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=48.0
Q ss_pred HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECC---------CCceEEEEcCEEEEccCCChH--HHhhhhCCC
Q 013476 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL---------SGKEFDTYAKVVVNAAGPFCD--SVRKLADQN 306 (442)
Q Consensus 238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~---------~g~~~~i~a~~VVlAtG~~s~--~l~~~~g~~ 306 (442)
..+.+++.|+++++++.+++|..++ | +|++|++.... +++...+.+|.||+|+|...+ .+++.+|+.
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~-g-~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~ 412 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN-G-KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVE 412 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC-C-EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcc
Confidence 3456678899999999999997544 6 89988764211 234468999999999996543 355555443
No 236
>PRK14727 putative mercuric reductase; Provisional
Probab=98.45 E-value=4.8e-06 Score=82.62 Aligned_cols=39 Identities=31% Similarity=0.550 Sum_probs=34.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~ 107 (442)
+.++||+|||+|.+|+++|+.|++.|.+|+|||+.. +++
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 456999999999999999999999999999999974 433
No 237
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=5.6e-07 Score=83.95 Aligned_cols=36 Identities=39% Similarity=0.682 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 68 ~~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.+..|||||||||-||+-||..+|+.|.+.+|+-.+
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 356799999999999999999999999999999887
No 238
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=9.8e-06 Score=80.02 Aligned_cols=37 Identities=35% Similarity=0.628 Sum_probs=33.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~ 109 (442)
+|+|||+|.+|+++|..|++.|++|+|||+..+++.|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccC
Confidence 7999999999999999999999999999998765433
No 239
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.37 E-value=1e-05 Score=58.72 Aligned_cols=31 Identities=45% Similarity=0.661 Sum_probs=29.8
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
|+|||||..|+-+|..|++.|.+|+||++.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 8999999999999999999999999999975
No 240
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.36 E-value=3.2e-06 Score=88.52 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...+|+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 34689999999999999999999999999999975
No 241
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.35 E-value=2.9e-06 Score=83.75 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
...+|+|||||++|+++|+.|++.|++|+|+|+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 447999999999999999999999999999999863
No 242
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.35 E-value=4.7e-06 Score=89.13 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------C--------CCceEEEEcCEEEEccCCChH
Q 013476 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L--------SGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------~--------~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+.+++.|++|++++.+.++..+++| +|++|++... . +|+...+.+|.||+|.|--.+
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G-~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEG-SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCC-eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCC
Confidence 4567789999999999999876667 9999877521 1 233357999999999997543
No 243
>PRK07846 mycothione reductase; Reviewed
Probab=98.34 E-value=9e-06 Score=79.94 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~ 109 (442)
+|||+|||+|.+|..+|..+ .|++|+|||+..+++.|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcc
Confidence 38999999999999988764 59999999997765544
No 244
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.33 E-value=5.9e-07 Score=88.27 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
..+...+.+.++++|+++++++++.++..++ + .+ .+.. .+ ..+.+|.||+|+|...+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~-~v---~v~~-~~---g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE-N-QV---QVHS-EH---AQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C-EE---EEEE-cC---CeEEeCEEEEeecCCcC
Confidence 4566777888889999999999999998765 3 43 2332 12 25889999999998764
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=2.9e-06 Score=83.62 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~ 104 (442)
+|||||||++|+++|..|++.+ .+|+|||+++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 5999999999999999999875 5899999975
No 246
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.33 E-value=1.9e-05 Score=77.99 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 347899999999999999999999999999999863
No 247
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=6.7e-07 Score=87.66 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=35.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~ 107 (442)
.+..+|+|||||++||+||..|.+.|.+|+|+|+.+ +||
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 556899999999999999999999999999999997 443
No 248
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.32 E-value=8.8e-06 Score=76.47 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCC-eEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASN-RIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~-~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
.++.+.+.-.+++..-.++++++|++|..+.++- ...-|++++ .+|....+.|+.||+|+|.
T Consensus 95 ~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 95 REFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----
T ss_pred HHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCC
Confidence 3444555445555566688999999998765320 244456655 5677789999999999994
No 249
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.31 E-value=1.9e-05 Score=81.01 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~ 106 (442)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3578999999999999999999999999999998743
No 250
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.29 E-value=8.6e-06 Score=80.15 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~g~ 109 (442)
+|||||||+|.+|..+|.. ..|++|+|||+..+++.|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCee
Confidence 4999999999999988654 469999999997665433
No 251
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.27 E-value=9e-05 Score=70.19 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhh
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~ 303 (442)
.+.++.....+.++++||++++++.|+++..++ |+++ +|+. .|.|+.||.|+|.-.+.+.+.+
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-------v~~~---~g~~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-------VTLK---DGEE-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-------EEEc---cCCe-eEecCEEEEcCCCcCChhhhhc
Confidence 346777788888999999999999999997653 4553 3332 6999999999999998888864
No 252
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=1.2e-06 Score=86.63 Aligned_cols=39 Identities=33% Similarity=0.538 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
|.+|||||||||++|+++|..|++.|++|+|||+..+++
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG 39 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 346999999999999999999999999999999954543
No 253
>PLN02576 protoporphyrinogen oxidase
Probab=98.21 E-value=1.8e-06 Score=86.40 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEeccC-CCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERED-FSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk~~-~~~ 107 (442)
.++||+|||||++||++|++|+++ |.+|+|+|+.+ +++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 347999999999999999999999 99999999997 544
No 254
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.19 E-value=1.1e-05 Score=81.74 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~ 106 (442)
...+|+|||+|++||++|+.|++.|++|+|+|+.+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998633
No 255
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.19 E-value=2.2e-06 Score=81.15 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~ 107 (442)
+||+|||||++|+++|++|++.|.+|+|||+.. +++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999999999999999986 443
No 256
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.18 E-value=2e-06 Score=85.17 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
..+...+.+.+++.|++++++++|+++..+++ . ..+.+.. ++...++.+|.||+|+|.-.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~-~~v~~~~--~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGG--G-KIITVEK--PGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--E-EEEEEEe--CCCceEEEeCEEEEeECCCc
Confidence 34556677778889999999999999987653 2 2244432 22335799999999999754
No 257
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=2.6e-06 Score=75.92 Aligned_cols=38 Identities=34% Similarity=0.549 Sum_probs=35.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGT 109 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~ 109 (442)
+|++|||||++|+..|..|++.|.+|+||||.. ++|.|
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 899999999999999999999999999999997 66654
No 258
>PLN02268 probable polyamine oxidase
Probab=98.18 E-value=2.1e-06 Score=84.36 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~ 107 (442)
.+|+|||||++||+||+.|.++|++|+|+|+.+ +++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 479999999999999999999999999999997 444
No 259
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.15 E-value=1.4e-05 Score=71.99 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSG 108 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g 108 (442)
...+|.|||+|++||+||+.|+++ ++|+|+|+.. .++.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 347899999999999999999975 6999999996 5443
No 260
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.15 E-value=1.5e-05 Score=78.17 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~ 104 (442)
+|||||||++|+.+|..|.+. +.+|+|||+++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 799999999999999999987 67899999975
No 261
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=2.3e-06 Score=81.81 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
.|+|+|||+|||+||++|+++|++|+|+|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 59999999999999999999999999999997443
No 262
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.13 E-value=3.4e-05 Score=72.84 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh----------HHH
Q 013476 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV 299 (442)
Q Consensus 230 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s----------~~l 299 (442)
....++.+|...+++.||+|+++++|++| ++++ ..+.+. ++ ...++||.||+|||+.+ -.+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~---~~v~~~---~~-~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~l 154 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT---LRFETP---DG-QSTIEADAVVLALGGASWSQLGSDGAWQQV 154 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc---EEEEEC---CC-ceEEecCEEEEcCCCccccccCCCcHHHHH
Confidence 45788999999999999999999999999 3322 334442 22 23689999999999854 378
Q ss_pred hhhhCCCC
Q 013476 300 RKLADQNV 307 (442)
Q Consensus 300 ~~~~g~~~ 307 (442)
++.+|.++
T Consensus 155 a~~lGh~i 162 (376)
T TIGR03862 155 LDQRGVSV 162 (376)
T ss_pred HHHCCCcc
Confidence 88888775
No 263
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.12 E-value=6.8e-05 Score=71.77 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCC--CCeEEEEEEEECCCCceEEE--Ec-CEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDT--YA-KVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~--g~~v~gV~~~~~~~g~~~~i--~a-~~VVlAtG~~s 296 (442)
..++..|.+.++++||+|+++++|++|+.+.+ ...++.+.+. .+|+...| .- |.|++..|.-+
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccc
Confidence 56788899999999999999999999987532 2145566665 35554444 33 78888888643
No 264
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.12 E-value=5.1e-05 Score=72.85 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.5
Q ss_pred EEEeeCcccChHHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 221 AVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 221 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+++..|. .++.+.+.+.+.-.|+.+.+++++.+|..+++| ++.||.. + ...++||.||.. ..|.
T Consensus 224 fLyP~YG~---GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g-~~~gV~s----~--ge~v~~k~vI~d-psy~ 288 (438)
T PF00996_consen 224 FLYPLYGL---GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDG-KVIGVKS----E--GEVVKAKKVIGD-PSYL 288 (438)
T ss_dssp EEEETT-T---THHHHHHHHHHHHTT-EEESS--EEEEEEETTT-EEEEEEE----T--TEEEEESEEEEE-GGGB
T ss_pred EEEEccCC---ccHHHHHHHHhhhcCcEEEeCCccceeeeecCC-eEEEEec----C--CEEEEcCEEEEC-CccC
Confidence 34454442 589999999998899999999999999987667 8988764 2 358999999943 3344
No 265
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.12 E-value=2.8e-06 Score=83.93 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=31.8
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC-CCC
Q 013476 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED-FSS 107 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~-~~~ 107 (442)
+|+|||||++||+||+.|+++| ++|+|+|+.+ +++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 6999999999999999999988 8999999997 443
No 266
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.2e-05 Score=67.78 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHH
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l 299 (442)
..+++.|.+++++.|.+|+.+ .|.++..+..-++ +.. +.+.+.|+.||+|||+-+.+|
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~---l~t------d~~~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFK---LWT------DARPVTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeE---EEe------cCCceeeeeEEEecccceeee
Confidence 578899999999999999764 5788877653222 222 134799999999999977544
No 267
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=3.7e-05 Score=69.30 Aligned_cols=38 Identities=39% Similarity=0.602 Sum_probs=34.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc-CCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFS 106 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~-~~~ 106 (442)
.++||.+|||||..|+++|..+++.|++|.|+|.. .++
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lG 56 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLG 56 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcC
Confidence 45699999999999999999999999999999987 343
No 268
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.08 E-value=3.9e-06 Score=83.20 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCeEEEEeccC-CCC
Q 013476 72 LDILVIGGGATGCGVALDAATR----GLRVGLVERED-FSS 107 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~-~~~ 107 (442)
.||+|||||++||++|++|+++ |++|+|+|+.+ +++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 6999999999999999999999 99999999997 444
No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.07 E-value=2.1e-05 Score=76.14 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGL--RVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~--~V~liEk~~ 104 (442)
...+|||||||++|+++|..|+++|. +|+||++..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 34689999999999999999999886 799999874
No 270
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.06 E-value=4.9e-06 Score=79.01 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.||+|||||++|+.+|+.|+++|++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 599999999999999999999999999999875
No 271
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.05 E-value=7.7e-06 Score=76.80 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred HHHHHHHH-HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC----ChHHHhhhhCCCC
Q 013476 236 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP----FCDSVRKLADQNV 307 (442)
Q Consensus 236 ~~l~~~~~-~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~----~s~~l~~~~g~~~ 307 (442)
+-+....+ +.|+++..+ ++..+....++ + .-|.+++...|+...+.+|.|||++|- .+..+.+.+|+..
T Consensus 418 EefY~~~Q~~~gV~fIRG-rvaei~e~p~~-~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~ 491 (622)
T COG1148 418 EEFYVRSQEDYGVRFIRG-RVAEIAEFPKK-K-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQ 491 (622)
T ss_pred HHHHHhhhhhhchhhhcC-ChHHheeCCCC-e-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCccc
Confidence 34444444 668888755 55566666655 5 447777766777788999999999995 2357888888764
No 272
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.02 E-value=1.3e-05 Score=76.74 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHC---CCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATR---GLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~---G~~V~liEk~~ 104 (442)
.|||||||++|+.+|..|.++ +.+|+|||++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999643 68999999874
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.02 E-value=9.9e-05 Score=71.01 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 306 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~ 306 (442)
.+.+.+++.|+++++++++.++..+++ .+ .|.+. +| .++.||.||+|+|...+ .+++.+|+.
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~---~g--~~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEKTDS--GI-RATLD---SG--RSIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHHhCCCEEEECCeEEEEEccCC--EE-EEEEc---CC--cEEECCEEEECcCCCcchHHHHHCCCC
Confidence 344556678999999999999987653 22 24442 33 37999999999998654 566766654
No 274
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.01 E-value=2.1e-05 Score=76.76 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
....+|||||||.+|+.+|..|.+.+.+|+|||+.+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 455799999999999999999987789999999864
No 275
>PLN02568 polyamine oxidase
Probab=97.99 E-value=9.5e-06 Score=81.03 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-----CeEEEEeccCCCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRG-----LRVGLVEREDFSS 107 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G-----~~V~liEk~~~~~ 107 (442)
++..||+|||||++||++|++|++.| ++|+|+|++...+
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 45689999999999999999999988 8999999987333
No 276
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.98 E-value=6.2e-05 Score=72.44 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~ 104 (442)
.||||||+|++|+.+|..|.+. ..+|+||++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 5899999999999999999886 45799999874
No 277
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=0.00016 Score=71.71 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|.+|+-+|..|++.|.+|+|||+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 589999999999999999999999999999864
No 278
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.93 E-value=0.00022 Score=69.06 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999999864
No 279
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.92 E-value=1.1e-05 Score=80.03 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC------CCeEEEEeccC-CCC
Q 013476 72 LDILVIGGGATGCGVALDAATR------GLRVGLVERED-FSS 107 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~------G~~V~liEk~~-~~~ 107 (442)
.+|+|||||++||+||++|++. |.+|+|+|+.+ +++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 3699999999999999999986 37999999997 444
No 280
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.91 E-value=1.2e-05 Score=77.24 Aligned_cols=32 Identities=38% Similarity=0.640 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~ 104 (442)
.|+|||||++||+|||+|++++ .+|+|+|+++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~ 35 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 4899999999999999999999 9999999985
No 281
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.91 E-value=1.5e-05 Score=84.08 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~ 106 (442)
...+|+|||||++|++||+.|++.|++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 3479999999999999999999999999999998643
No 282
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.90 E-value=0.00066 Score=62.98 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=47.5
Q ss_pred HHcCceEecCeEEEEEEE------cCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCCCCCcccCCCe
Q 013476 243 ALAGAAVLNHAEVISLIK------DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSG 316 (442)
Q Consensus 243 ~~~Gv~i~~~~~v~~l~~------~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~~~~~~~~~~g 316 (442)
+...+++...+++.++.. ++++ -..-+... +| ..+.+|.+|-|.|..| -+.+..+++....-+-..+
T Consensus 164 ~~~nv~vi~~~k~~~~~~~~~l~~~~n~-~~~~i~l~---dg--~~~~~~LLigAdg~Ns-~vR~~snid~~~~ny~~ha 236 (481)
T KOG3855|consen 164 ESDNVTVINMAKVIDCTIPEYLIKNDNG-MWFHITLT---DG--INFATDLLIGADGFNS-VVRKASNIDVASWNYDQHA 236 (481)
T ss_pred hcCceeeecccceeeeccccccCCCCCc-ceEEEEec---cC--ceeeeceeeccccccc-hhhhhcCCCccccccccee
Confidence 446899999999887754 3345 44444443 33 4888999999999888 5777777765444445555
Q ss_pred eEEEe
Q 013476 317 VHIVL 321 (442)
Q Consensus 317 ~~~~~ 321 (442)
.+..+
T Consensus 237 vVAtl 241 (481)
T KOG3855|consen 237 VVATL 241 (481)
T ss_pred eeEEE
Confidence 44433
No 283
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=0.00023 Score=70.54 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+.+.++++|++++++++++++..+++ .+ .+.+.. .+|+...+.+|.||+|+|.-.
T Consensus 218 ~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~-~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 218 EIAKQYKKLGVKILTGTKVESIDDNGS--KV-TVTVSK-KDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEeCC--eE-EEEEEe-cCCCeEEEEeCEEEECcCccc
Confidence 344556678999999999999987552 33 244432 245445799999999999754
No 284
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=0.00031 Score=69.57 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-.|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3579999999999999999999999999999853
No 285
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.88 E-value=1.4e-05 Score=76.36 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.||+|||||.+|+.+|+.|+++|++|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 489999999999999999999999999999875
No 286
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.86 E-value=0.00032 Score=69.54 Aligned_cols=33 Identities=39% Similarity=0.578 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 589999999999999999999999999999874
No 287
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.83 E-value=0.00035 Score=69.07 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999999863
No 288
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.83 E-value=0.0003 Score=69.38 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476 236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 306 (442)
Q Consensus 236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~ 306 (442)
..+.+.+++.|++++++++++++..+ + ++..+... + ..+.+|.||+|+|...+ .+++..|+.
T Consensus 195 ~~l~~~l~~~gI~v~~~~~v~~i~~~--~-~~~~v~~~----~--~~i~~d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 195 DVMEEELRENGVELHLNEFVKSLIGE--D-KVEGVVTD----K--GEYEADVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEecC--C-cEEEEEeC----C--CEEEcCEEEECcCCCcCHHHHHhcCcc
Confidence 34555667789999999999999643 3 55545432 2 26899999999998653 566665554
No 289
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=4.3e-05 Score=68.92 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcC-CCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~-~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.++..+|.+..++..+++..-.++++|+... .+ ...-|++. +| -.++++.||++||+.=
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~-~l~ev~l~---nG--avLkaktvIlstGArW 325 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEG-GLIEVELA---NG--AVLKARTVILATGARW 325 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCC-ccEEEEec---CC--ceeccceEEEecCcch
Confidence 4677788888888888888888888888742 23 34445664 33 4789999999999843
No 290
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.81 E-value=9.4e-05 Score=77.81 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATR----GLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~ 104 (442)
-+|||||+|++|+.+|..|.++ +++|+||++.+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~ 40 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP 40 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC
Confidence 4899999999999999999764 57999999985
No 291
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.0003 Score=69.69 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999999999999999999999999864
No 292
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.78 E-value=8.2e-05 Score=78.12 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
++++|++++.+++|++|..+.. .| ++. +| ..+.+|.+|+|||...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~k--~V---~~~---~g--~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQK--QV---ITD---AG--RTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCCC--EE---EEC---CC--cEeeCCEEEECCCCCc
Confidence 3568999999999999987652 33 332 33 3789999999999854
No 293
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=0.00061 Score=67.66 Aligned_cols=56 Identities=7% Similarity=0.050 Sum_probs=40.3
Q ss_pred HHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH
Q 013476 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 238 l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+.+.+++.|++++++++|+++..+++ .+ .+.+.+ .+|+...+.+|.||+|+|...+
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~~--~v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGGK--GV-SVAYTD-ADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcCC--EE-EEEEEe-CCCceeEEEcCEEEEccCCccC
Confidence 34455668999999999999987653 43 244443 3344467999999999997553
No 294
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.77 E-value=3.4e-05 Score=79.51 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
...+|+|||||++|+++|+.|++.|++|+|+|+...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r 272 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR 272 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence 348999999999999999999999999999999863
No 295
>PRK06370 mercuric reductase; Validated
Probab=97.77 E-value=0.00046 Score=68.37 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 589999999999999999999999999999864
No 296
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.76 E-value=0.00035 Score=69.99 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=40.3
Q ss_pred cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.|+++++++.++++..++ + ++.+|.+.+..+++...+.+|.||+|+|.-.
T Consensus 401 ~gV~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDG-D-KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcCC-C-EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 589999999999997765 4 8888888763345556899999999999754
No 297
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.76 E-value=0.00041 Score=73.11 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 306 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~ 306 (442)
.+.+.++++|+++++++.++++..++++ .+..|.+. +|+ .+.+|.||+|+|.-.+ .|++..|+.
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~-~~~~v~~~---dG~--~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVE-ARKTMRFA---DGS--ELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCC-ceEEEEEC---CCC--EEEcCEEEECCCcccCchHHhhcCcc
Confidence 4555667889999999999999865433 45555553 443 7999999999997543 366666654
No 298
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=0.0005 Score=67.59 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 299
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.74 E-value=4.6e-05 Score=74.74 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHH--CCCeEEEEeccCCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAAT--RGLRVGLVEREDFSSG 108 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~--~G~~V~liEk~~~~~g 108 (442)
..+|+|||||++|+.||+.|++ .|++|+|+|+.+..+|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 3689999999999999999997 7999999999974443
No 300
>PRK06116 glutathione reductase; Validated
Probab=97.70 E-value=0.00058 Score=67.42 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999999864
No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.68 E-value=0.0006 Score=71.75 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 306 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~ 306 (442)
.+.+.++++|+++++++.++++..++ ++.+|.+. +|+ .+.+|.||+|+|.-.+ .|++..|+.
T Consensus 187 ~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~---dG~--~i~~D~Vi~a~G~~Pn~~la~~~gl~ 249 (785)
T TIGR02374 187 LLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFK---DGS--SLEADLIVMAAGIRPNDELAVSAGIK 249 (785)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEEC---CCC--EEEcCEEEECCCCCcCcHHHHhcCCc
Confidence 34455667899999999999987543 66667764 343 7999999999997543 455555554
No 302
>PRK10262 thioredoxin reductase; Provisional
Probab=97.67 E-value=0.00077 Score=63.33 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=41.8
Q ss_pred HHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECC-CCceEEEEcCEEEEccCCChH
Q 013476 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL-SGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 239 ~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~-~g~~~~i~a~~VVlAtG~~s~ 297 (442)
.+.+++.|+++++++.++++..++ + ++.+|++.+.. ++....+.+|.||+|+|.-.+
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~~-~-~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcCC-c-cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 334456789999999999997665 4 67788876422 133457999999999998654
No 303
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.66 E-value=0.00081 Score=66.23 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 589999999999999999999999999999863
No 304
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.66 E-value=0.00082 Score=66.59 Aligned_cols=34 Identities=32% Similarity=0.634 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3579999999999999999999999999999863
No 305
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.65 E-value=0.00093 Score=61.98 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHc-CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhh
Q 013476 243 ALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKL 302 (442)
Q Consensus 243 ~~~-Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~ 302 (442)
+++ |+++++++.++++..++ ++.++++.+..+++...+.+|.||+|+|.-.+ .+++.
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~ 245 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKG 245 (300)
T ss_pred HhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHH
Confidence 345 89999999999997643 67777776434555678999999999996443 24443
No 306
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=97.64 E-value=1.9e-05 Score=42.87 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=14.7
Q ss_pred CcchhhhhhhHHHHhhhc
Q 013476 1 MSATRIRRFGAVLAAAAG 18 (442)
Q Consensus 1 ~srR~f~~~~~~~~~~aa 18 (442)
||||+|||++++++++++
T Consensus 2 ~sRR~fLk~~~a~~a~~~ 19 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAA 19 (26)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 799999999987766654
No 307
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.64 E-value=0.00072 Score=66.25 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|.+|+-+|..|++.|.+|+|+++.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 589999999999999999999999999999863
No 308
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.63 E-value=0.00087 Score=67.26 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=41.3
Q ss_pred cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.|+++++++.++++..++ + ++++|.+++..+++...+.+|.|++|+|.-.
T Consensus 400 ~gI~i~~~~~v~~i~~~~-g-~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDG-D-KVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred CCcEEEECcEEEEEEcCC-C-cEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 589999999999998765 5 8888888764456656899999999999855
No 309
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.61 E-value=8.1e-05 Score=78.08 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEEC------C---------CCceEEEEcCEEEEccCCChH
Q 013476 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKEFDTYAKVVVNAAGPFCD 297 (442)
Q Consensus 240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~------~---------~g~~~~i~a~~VVlAtG~~s~ 297 (442)
+.+++.|+++++++.+.++..+++| +|++|++... . +++...+.||.||+|+|--.+
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKG-WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCC-EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence 4567789999999999999876667 8998887421 0 233457999999999997654
No 310
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.61 E-value=0.001 Score=62.63 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=32.0
Q ss_pred CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 246 Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
-++++.+++|+++..+++| ++ -+.+++..++....+.+|.||+|||.
T Consensus 293 ~~~l~~~~~v~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDG-GV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-S-SE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCC-EE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 4899999999999988853 33 25666656677788999999999994
No 311
>PRK14727 putative mercuric reductase; Provisional
Probab=97.59 E-value=0.00094 Score=66.36 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 47999999999999999999999999999864
No 312
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0012 Score=62.98 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHC--C-CeEEEEeccC-CCCCC
Q 013476 72 LDILVIGGGATGCGVALDAATR--G-LRVGLVERED-FSSGT 109 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~--G-~~V~liEk~~-~~~g~ 109 (442)
++|+|||+|..|+++|.+|.+. . .+|.|+|+.. .+.|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 7899999999999999999985 2 2399999986 55443
No 313
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56 E-value=0.0015 Score=64.70 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-+|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 589999999999999999999999999999864
No 314
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.54 E-value=9.8e-05 Score=76.85 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
....|+|||+|++|+++|++|++.|++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45789999999999999999999999999999864
No 315
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.52 E-value=0.0016 Score=64.15 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 479999999999999999999999999999863
No 316
>PLN02507 glutathione reductase
Probab=97.50 E-value=0.0018 Score=64.56 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-+|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 589999999999999999999999999999863
No 317
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.50 E-value=0.0019 Score=64.12 Aligned_cols=32 Identities=28% Similarity=0.207 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-.++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 46999999999999999999999999999863
No 318
>PRK14694 putative mercuric reductase; Provisional
Probab=97.50 E-value=0.0017 Score=64.48 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 57999999999999999999999999999864
No 319
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.49 E-value=0.00012 Score=67.97 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCe--EEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLR--VGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~--V~liEk~~ 104 (442)
...+|+|||||++||++||+|++++.+ |+|+|+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 447999999999999999999999876 56699986
No 320
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.48 E-value=4.7e-05 Score=63.77 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~ 104 (442)
-.+.||||||+|.+||++||..+++ .++|.|||..-
T Consensus 74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred hhccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 3467999999999999999999965 68999999985
No 321
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.48 E-value=0.00016 Score=74.38 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
...+|+|||+|++|+++|+.|++.|++|+|+|+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 346999999999999999999999999999999863
No 322
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.47 E-value=0.0018 Score=63.79 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999999999999999999999999864
No 323
>PTZ00058 glutathione reductase; Provisional
Probab=97.46 E-value=0.0018 Score=65.15 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 3579999999999999999999999999999863
No 324
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.44 E-value=0.0025 Score=63.07 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.++|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999999999999999999999999853
No 325
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.44 E-value=0.0002 Score=67.69 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC-CCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVERED-FSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~-~~~ 107 (442)
..+.|||||||++||+||.+|-++|. .|+|+|..+ +++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 44789999999999999999998876 699999986 544
No 326
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.43 E-value=0.002 Score=63.97 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
..+.+.++++|+++++++.++++..++++ ...|++. ++ ..+.+|.||+|+|.-.
T Consensus 235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~~~--~~~v~~~---~g--~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 235 KELTKQLRANGINIMTNENPAKVTLNADG--SKHVTFE---SG--KTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcCCc--eEEEEEc---CC--CEEEcCEEEEeeCCCc
Confidence 34555667789999999999999876543 3334442 33 3799999999999754
No 327
>PLN03000 amine oxidase
Probab=97.42 E-value=0.0002 Score=74.17 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~ 107 (442)
...||+|||||++|+.+|+.|++.|++|+|+|+.. +++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 45899999999999999999999999999999986 443
No 328
>PRK13748 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.0019 Score=65.65 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-.|+|||+|..|+-.|..|++.|.+|+||++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999874
No 329
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.39 E-value=0.0036 Score=64.07 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 479999999999999999999999999999864
No 330
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.38 E-value=0.0018 Score=61.52 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
+.+....+++|++++.++.+.++..+.+| +++-|.+.+ + .++.||.||+++|.-.
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~G-ev~~V~l~d---g--~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNSDG-EVSEVKLKD---G--KTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCCCC-cEEEEEecc---C--CEeccCeEEEeecccc
Confidence 34555667899999999999999988878 998888853 4 4899999999999844
No 331
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.37 E-value=0.00029 Score=68.34 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHH-HCCCeEEEEeccCCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAA-TRGLRVGLVEREDFSSG 108 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La-~~G~~V~liEk~~~~~g 108 (442)
...|+|||||++|+.||.+|+ +.|++|+|+||.+..+|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 367999999999999999765 67999999999975443
No 332
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.37 E-value=0.002 Score=67.72 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLR-VGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~ 104 (442)
-.|||||+|..|+-+|..|.+.|.+ |+|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99999863
No 333
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.36 E-value=0.0024 Score=63.24 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 589999999999999999999999999999864
No 334
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.32 E-value=0.004 Score=62.14 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999863
No 335
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.32 E-value=0.0023 Score=62.25 Aligned_cols=34 Identities=44% Similarity=0.712 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..+|||||+|.+|+.+|..|+++|++|+|+|+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence 4799999999999999999999999999999975
No 336
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.31 E-value=0.00038 Score=66.31 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~ 106 (442)
..+|+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 368999999999999999999999999999998643
No 337
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.31 E-value=0.0032 Score=61.60 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCCC
Q 013476 236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (442)
Q Consensus 236 ~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~~ 306 (442)
..+.+.++++|++++++++++++..+ . |+++ +|+ ++.+|.||+|+|.-.+.+.+.+++.
T Consensus 232 ~~~~~~L~~~gV~v~~~~~v~~v~~~----~---v~~~---~g~--~i~~d~vi~~~G~~~~~~~~~~~l~ 290 (424)
T PTZ00318 232 KYGQRRLRRLGVDIRTKTAVKEVLDK----E---VVLK---DGE--VIPTGLVVWSTGVGPGPLTKQLKVD 290 (424)
T ss_pred HHHHHHHHHCCCEEEeCCeEEEEeCC----E---EEEC---CCC--EEEccEEEEccCCCCcchhhhcCCc
Confidence 34455667799999999999988532 3 3443 343 7899999999997666666655543
No 338
>PRK07846 mycothione reductase; Reviewed
Probab=97.29 E-value=0.0034 Score=61.87 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-+|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 3589999999999999999999999999999864
No 339
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.28 E-value=0.0004 Score=68.96 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..+|+|||+|++|+++|..|++.|++|+|+|+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3699999999999999999999999999999986
No 340
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.28 E-value=0.0037 Score=61.42 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 579999999999999999999999999999863
No 341
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.27 E-value=0.00018 Score=68.88 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
.+|.+|||+|.+|+.+|..|++.|++|.++-|-.+
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p 89 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFP 89 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEecccc
Confidence 39999999999999999999999999999988743
No 342
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.25 E-value=0.0034 Score=59.81 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~ 103 (442)
-.|+|||+|..|+-+|..|++.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 4699999999999999999999997 9999874
No 343
>PLN02976 amine oxidase
Probab=97.25 E-value=0.0004 Score=74.80 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
...||+|||+|++|+++|+.|++.|++|+|||+...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~ 727 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR 727 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence 348999999999999999999999999999999863
No 344
>PLN02546 glutathione reductase
Probab=97.18 E-value=0.0068 Score=61.08 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-+|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 3589999999999999999999999999999853
No 345
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.12 E-value=0.007 Score=64.74 Aligned_cols=32 Identities=38% Similarity=0.502 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-+|||||||..|+-+|..|.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 47999999999999999999999999999875
No 346
>PRK13984 putative oxidoreductase; Provisional
Probab=97.09 E-value=0.00078 Score=69.07 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=34.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
...+|+|||+|++|+++|..|++.|++|+|+|+.+..+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45789999999999999999999999999999987443
No 347
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.04 E-value=0.011 Score=58.38 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.++|||+|..|+-.|..|++.|.+|+|||+.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 589999999999999999999999999999853
No 348
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.97 E-value=0.00079 Score=65.50 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccCC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~ 105 (442)
-.|.|||||++||++|..|+++|++|+++|+.+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 6899999999999999999999999999999863
No 349
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.97 E-value=0.015 Score=63.10 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=45.0
Q ss_pred HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhCCC
Q 013476 242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 306 (442)
Q Consensus 242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g~~ 306 (442)
++++|+++++++.++++..+ + ++.+|++.. .+++...+.||.|+++.|.-.+ .|...+|..
T Consensus 361 L~~~GV~i~~~~~v~~i~g~--~-~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG--K-RVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC--C-cEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence 45678999999999988654 3 778888763 2345568999999999997543 566666643
No 350
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.84 E-value=0.018 Score=58.39 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|||+|..|+-.|..|++.|.+|+|+++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999999999999853
No 351
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0027 Score=58.38 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEeccCCCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGT 109 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~~~~g~ 109 (442)
...|+|||+|++|+.+|.+|.++ +++|.|+||.+...|-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence 45899999999999999999884 7899999999855443
No 352
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.002 Score=58.04 Aligned_cols=34 Identities=38% Similarity=0.441 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..-|-|||||.+|.-+||.+|++|..|.|.|-.+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 4569999999999999999999999999999886
No 353
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.43 E-value=0.063 Score=51.38 Aligned_cols=57 Identities=16% Similarity=-0.017 Sum_probs=39.7
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhCC
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g~ 305 (442)
.+.+.++++|++++.++++.++.. + . |.+. +| .++.+|.||+|+|...+.++...++
T Consensus 196 ~~~~~l~~~gV~v~~~~~v~~i~~---~-~---v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~gl 252 (364)
T TIGR03169 196 LVLRLLARRGIEVHEGAPVTRGPD---G-A---LILA---DG--RTLPADAILWATGARAPPWLAESGL 252 (364)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEcC---C-e---EEeC---CC--CEEecCEEEEccCCChhhHHHHcCC
Confidence 344556678999999999988742 2 2 3442 33 3789999999999876665554443
No 354
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.046 Score=50.95 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 232 ~~l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
.++.+.+.+.+.=.|+++..|.++..+....+| ++.||.. +. ....+| -|+|...|.++-.+..|
T Consensus 232 gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~g-k~igvk~-----~~-~v~~~k-~vi~dpSY~~~~~k~vg 296 (440)
T KOG1439|consen 232 GELPQGFARLSAVYGGTYMLNKPIDEINETKNG-KVIGVKS-----GG-EVAKCK-KVICDPSYFPQKVKKVG 296 (440)
T ss_pred chhhHHHHHHhhccCceeecCCceeeeeccCCc-cEEEEec-----CC-ceeecc-eEEecCccchHHHHhhh
Confidence 467788888777789999999999999996557 8877754 22 355667 67788888876666554
No 355
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.36 E-value=0.046 Score=56.50 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~ 103 (442)
-.|||||+|..|+-+|..|.+.|. +|+|+++.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 579999999999999999999997 59999875
No 356
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.28 E-value=0.026 Score=52.86 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~ 104 (442)
+..+|++.||-|+.-|+.|+.|.+.+ .+++.+||.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 45699999999999999999999975 7899999985
No 357
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.27 E-value=0.0056 Score=50.74 Aligned_cols=30 Identities=40% Similarity=0.474 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
|.|||||..|.++|..|+++|++|.|+.+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 899999999999999999999999999875
No 358
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.23 E-value=0.0095 Score=54.81 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=32.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCeEEEEeccCCCCCC
Q 013476 72 LDILVIGGGATGCGVALDAATR----GLRVGLVEREDFSSGT 109 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~----G~~V~liEk~~~~~g~ 109 (442)
-.+-|||+|++||++|..|-|. |.++.|+|.-+..+|+
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS 64 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS 64 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence 5688999999999999999875 7899999998765544
No 359
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=96.21 E-value=0.0021 Score=43.87 Aligned_cols=16 Identities=31% Similarity=-0.016 Sum_probs=12.1
Q ss_pred CcchhhhhhhHHHHhh
Q 013476 1 MSATRIRRFGAVLAAA 16 (442)
Q Consensus 1 ~srR~f~~~~~~~~~~ 16 (442)
+|||+|||+.++++++
T Consensus 9 ~sRR~Flk~lg~~aaa 24 (66)
T TIGR02811 9 PSRRDLLKGLGVGAAA 24 (66)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4899999987765543
No 360
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.18 E-value=0.0079 Score=51.03 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
|.|||+|..|...|..++..|++|+|+|...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 8999999999999999999999999999863
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.10 E-value=0.0074 Score=51.42 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=26.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||.|..|+.+|..||+.|++|+.+|...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 48999999999999999999999999999873
No 362
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.05 E-value=0.01 Score=48.88 Aligned_cols=30 Identities=47% Similarity=0.584 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
|+|||+|..|+..|+.|++.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 789999999999999999999999999885
No 363
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.95 E-value=0.087 Score=52.45 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~ 104 (442)
-.|+|||+|..|+-+|..+.+.|. +|+++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 479999999999999988888875 699998764
No 364
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.83 E-value=0.064 Score=54.09 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=47.1
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh-HHHhhhhCCCC
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQNV 307 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s-~~l~~~~g~~~ 307 (442)
.|.+.+++.|++++++...+.+..+ + ++.+|... +|. .+.|+.||.|+|.-- ..|.+..|+.+
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~--~-~~~~vr~~---DG~--~i~ad~VV~a~GIrPn~ela~~aGlav 255 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE--D-KVEGVRFA---DGT--EIPADLVVMAVGIRPNDELAKEAGLAV 255 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC--c-ceeeEeec---CCC--cccceeEEEecccccccHhHHhcCcCc
Confidence 4556667889999998888877763 3 78888875 343 789999999999743 26777777654
No 365
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=95.82 E-value=0.0052 Score=34.43 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=13.6
Q ss_pred CcchhhhhhhHHHHhhhc
Q 013476 1 MSATRIRRFGAVLAAAAG 18 (442)
Q Consensus 1 ~srR~f~~~~~~~~~~aa 18 (442)
+|||+|||..++++++++
T Consensus 1 ~sRR~Flk~~~~~~a~~~ 18 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAG 18 (29)
T ss_pred CchhhhHHHHHHHHHHHh
Confidence 689999999876555443
No 366
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.012 Score=61.37 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-..|.|||+|++||+||-.|-+.|+.|+|+||.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 3689999999999999999999999999999986
No 367
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.79 E-value=0.079 Score=56.00 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECC------C------C-------------ceEEEEcCEEEEccCC
Q 013476 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------S------G-------------KEFDTYAKVVVNAAGP 294 (442)
Q Consensus 240 ~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~------~------g-------------~~~~i~a~~VVlAtG~ 294 (442)
+.|.+.|++|.+++.-.+++.+++| +|++++++.+. . + ....+.||.||+|.|-
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g-~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYG-HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCC-eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 4566789999999999999887667 99999887432 1 1 3467999999999994
No 368
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.71 E-value=0.12 Score=51.19 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=38.4
Q ss_pred cCceEecCeEEEEEEEc--CCCCeEEEEEEEEC--------------CCCceEEEEcCEEEEccCCCh
Q 013476 245 AGAAVLNHAEVISLIKD--EASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 245 ~Gv~i~~~~~v~~l~~~--~~g~~v~gV~~~~~--------------~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+++|+|...-++|..+ ++| +|.++++..+ .+|+...+.||.||.|-|.-+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~-~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG-HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC-cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 57899888888888742 336 8999988632 145566799999999999764
No 369
>PRK13984 putative oxidoreductase; Provisional
Probab=95.54 E-value=0.2 Score=51.61 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=34.4
Q ss_pred HcCceEecCeEEEEEEEcCCCCeEEEEEEEEC-----C---------CCceEEEEcCEEEEccCCCh
Q 013476 244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNN-----L---------SGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~-----~---------~g~~~~i~a~~VVlAtG~~s 296 (442)
+.|+++++++.+.++..++ + +|++|++... . ++....+.+|.||+|.|--.
T Consensus 474 ~~GV~i~~~~~~~~i~~~~-g-~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIEN-D-KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HcCCEEEeCCCCEEEEccC-C-EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 4678888777777775543 5 7777765320 0 22345799999999999754
No 370
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.021 Score=50.42 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
+++|||+|-.|.+.|..|+++|+.|++||+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999974
No 371
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.023 Score=52.96 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
+|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999864
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.025 Score=56.32 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999753
No 373
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.13 E-value=0.33 Score=52.15 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=29.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATR-GL-RVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~ 104 (442)
.-.|||||+|..|+-+|..+.+. |. +|+|+++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35799999999999999999886 86 799998863
No 374
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.12 E-value=0.25 Score=52.84 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=28.7
Q ss_pred CcEEEECCChHHHHHHHHHHHC-C-CeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATR-G-LRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~-G-~~V~liEk~~ 104 (442)
-.|||||||..|+-+|..+.+. | .+|+|+.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999999887 5 3899998863
No 375
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.028 Score=55.69 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|+|||.|.+|+++|..|+++|++|++.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 48999999999999999999999999999874
No 376
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.01 E-value=0.024 Score=55.36 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=36.7
Q ss_pred HHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 237 ~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+...+...|.+|+++++|++|..+++ +|+ |.. .+|+ .+.||.||+|+....
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~--~v~-v~~---~~g~--~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIEREDG--GVT-VTT---EDGE--TIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEESS--EEE-EEE---TTSS--EEEESEEEE-S-HHH
T ss_pred HHHHHHhhcCceeecCCcceecccccc--ccc-ccc---ccce--EEecceeeecCchhh
Confidence 334444556889999999999999884 664 333 3444 899999999999744
No 377
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.87 E-value=0.28 Score=46.43 Aligned_cols=63 Identities=14% Similarity=-0.052 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChHHHhhhhC
Q 013476 234 LNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (442)
Q Consensus 234 l~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~~l~~~~g 304 (442)
+.....+...+.|+++..++.|.++..+. +.++. ++|+...|..-.+|-+||.....+.+.|.
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~~~~-------I~~~~-~~g~~~~iPYG~lVWatG~~~rp~~k~lm 337 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVTEKT-------IHAKT-KDGEIEEIPYGLLVWATGNGPRPVIKDLM 337 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeecCcE-------EEEEc-CCCceeeecceEEEecCCCCCchhhhhHh
Confidence 34444555667799999999998875432 35554 46777788999999999998776666553
No 378
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.83 E-value=0.048 Score=50.92 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...|+|||+|..|...|..|++.|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3469999999999999999999999999998863
No 379
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.78 E-value=0.04 Score=51.25 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|.|||+|..|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999864
No 380
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.76 E-value=0.043 Score=50.53 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|.|||+|..|...|..|+++|.+|+++|..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 35999999999999999999999999999986
No 381
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.72 E-value=0.054 Score=46.77 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~ 104 (442)
...|+|||+|..|...|..|++.|. +++|+|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5789999999999999999999999 699999874
No 382
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.70 E-value=0.04 Score=54.62 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 589999999999999999999999999999975
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.69 E-value=0.046 Score=50.25 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 384
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.64 E-value=0.05 Score=50.55 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 46999999999999999999999999999985
No 385
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.62 E-value=0.046 Score=50.37 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 48999999999999999999999999999863
No 386
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.60 E-value=0.054 Score=46.94 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|+|||||.+|..-+..|.+.|++|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999864
No 387
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.063 Score=49.54 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccCCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~~~~ 107 (442)
.|||+|+|.|+.=+..+..|+..|.+|+.||+++.-+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 6999999999999999999999999999999998433
No 388
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.043 Score=51.19 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC-CCCCCccCCCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTK 115 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~-~~~g~s~~~~g 115 (442)
..++||||||.|.-=...|.+.++.|.+|+=+|.++ .++.-++.+..
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 456999999999999999999999999999999997 45544444433
No 389
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.53 E-value=0.067 Score=44.86 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|+|+|+|.+|..||..|...|++|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 67999999999999999999999999999986
No 390
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.46 E-value=0.049 Score=50.96 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||.|.+||++|.-||+.|+.|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 48999999999999999999999999999874
No 391
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.38 E-value=0.086 Score=42.37 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~ 103 (442)
....|+|||+|-+|-.++++|++.|.+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999999999999999999997 9999875
No 392
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.32 E-value=0.049 Score=47.18 Aligned_cols=34 Identities=32% Similarity=0.520 Sum_probs=29.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-.|+|||+|.++.-+|+.|++.|.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4789999999999999999999999999998865
No 393
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.84 Score=42.26 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=40.1
Q ss_pred CceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCChH-HHhhhhC
Q 013476 246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLAD 304 (442)
Q Consensus 246 Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s~-~l~~~~g 304 (442)
++++++++++.+|.-++ |.+|++++.. +....+..+.|.++.|.-.+ .+++.++
T Consensus 193 ~i~~~~~~~i~ei~G~~----v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~~~~~~ 247 (305)
T COG0492 193 KIEVLTNTVVKEILGDD----VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTELLKGLG 247 (305)
T ss_pred CeEEEeCCceeEEecCc----cceEEEEecC-CceEEEEeceEEEecCCCCchHHHhhcc
Confidence 68999999999887543 5678887633 56678999999999998543 5555443
No 394
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=94.32 E-value=0.06 Score=52.57 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.++|||||..|+-.|..+++.|.+|+|||+.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 569999999999999999999999999999985
No 395
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.32 E-value=0.071 Score=49.25 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|.|||+|..|...|..|+++|++|+++|+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999999999986
No 396
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.28 E-value=0.076 Score=43.88 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk 102 (442)
...|+|||||-.|..-|..|.+.|++|+||..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 46799999999999999999999999999954
No 397
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.23 E-value=0.035 Score=48.70 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~--G~~V~liEk~~ 104 (442)
.+||||||+|.+||-.|+.. ..+|+||-..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 68999999999999999975 67899997764
No 398
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.18 E-value=0.077 Score=45.91 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
...|+|||||-.|...|..|.+.|++|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 467999999999999999999999999999763
No 399
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.17 E-value=0.074 Score=52.52 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999863
No 400
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.11 E-value=0.073 Score=49.16 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999863
No 401
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.11 E-value=0.045 Score=41.62 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
+...|+|||+|..|..-+..|.+.|++|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3467999999999999999999999999999875
No 402
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.07 E-value=0.098 Score=43.67 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCCCcEEEECCCh-HHHHHHHHHHHCCCeEEEEecc
Q 013476 69 SNPLDILVIGGGA-TGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 69 ~~~~DVvVVGaG~-aGl~aA~~La~~G~~V~liEk~ 103 (442)
-....|+|||+|- +|..+|..|.++|.+|.++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3558899999995 6999999999999999999875
No 403
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.49 Score=43.55 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=38.7
Q ss_pred cCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCC
Q 013476 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (442)
Q Consensus 245 ~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~ 294 (442)
.+++|+.|..-+.+.-+++ +|+|+..+++.+|+...+.=..|.+--|.
T Consensus 403 ~Nv~ii~na~Ttei~Gdg~--kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL 450 (520)
T COG3634 403 PNVTIITNAQTTEVKGDGD--KVTGLEYRDRVSGEEHHLELEGVFVQIGL 450 (520)
T ss_pred CCcEEEecceeeEEecCCc--eecceEEEeccCCceeEEEeeeeEEEEec
Confidence 3688999988888887765 99999999877787777777888777775
No 404
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.98 E-value=0.071 Score=49.59 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVER 102 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk 102 (442)
.|+|||+|..|...|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999988
No 405
>PRK04148 hypothetical protein; Provisional
Probab=93.85 E-value=0.065 Score=42.50 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.+++||.| .|...|..|++.|.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 469999999 99989999999999999999864
No 406
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.81 E-value=0.086 Score=49.00 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|+|||+|..|...|..|++.|.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999984
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.78 E-value=0.11 Score=46.89 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRG-LRVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~~ 105 (442)
....|+|||+|..|..+|..|++.| .+++|+|...+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4588999999999999999999999 47999998764
No 408
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.77 E-value=0.1 Score=48.01 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..|++.|++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999999999999999999999999999863
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.77 E-value=0.085 Score=51.26 Aligned_cols=33 Identities=33% Similarity=0.220 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|.|||.|..|+..|..|+++|++|+++|..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 459999999999999999999999999999864
No 410
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.69 E-value=0.089 Score=51.88 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|||||+|..|+-+|..|++.|.+|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999863
No 411
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.66 E-value=0.099 Score=49.53 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|.|||+|..|...|..|++.|++|+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999985
No 412
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.66 E-value=0.064 Score=48.32 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..+|+|||+|.+|.-+|.-+.-.|.+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 478999999999999999999999999999986
No 413
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.62 E-value=0.11 Score=49.59 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..+|+|||+|.+|+.+|..|.+.|.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 467999999999999999999999999999985
No 414
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.47 E-value=0.13 Score=48.44 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
....|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35789999999999999999999999 8999999753
No 415
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.39 E-value=0.11 Score=48.07 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~ 103 (442)
.|.|||+|..|...|+.|+..|. +|+++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999887 89999985
No 416
>PRK12831 putative oxidoreductase; Provisional
Probab=93.35 E-value=0.11 Score=51.51 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-.|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 48999999999999999999999999999875
No 417
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.29 E-value=0.12 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~ 104 (442)
.|.|||+|.+|.++|+.|++.| ..|+|+|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4899999999999999999999 4799999864
No 418
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.28 E-value=0.11 Score=41.66 Aligned_cols=34 Identities=32% Similarity=0.594 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
..|+|||+|..|...|..|++.|. +++|+|...+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 579999999999999999999998 6999999864
No 419
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.16 E-value=0.19 Score=39.05 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
|+|||.|-.|...+..|.+.+.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999974
No 420
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.08 E-value=0.15 Score=47.90 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
....|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35789999999999999999999998 7999999854
No 421
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.98 E-value=0.16 Score=43.82 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|+|+|.|-.|..+|..|.+.|++|+++|..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56999999999999999999999999998864
No 422
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.95 E-value=0.14 Score=48.12 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|.|||+|..|.+.|..|+++|.+|.++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4899999999999999999999999999985
No 423
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.95 E-value=0.15 Score=47.20 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..|+..|++|+++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 49999999999999999999999999999863
No 424
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.93 E-value=0.13 Score=50.11 Aligned_cols=32 Identities=34% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||.|..|+..|..|++.|++|+++|+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 48999999999999999999999999999874
No 425
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.91 E-value=0.15 Score=47.56 Aligned_cols=32 Identities=34% Similarity=0.596 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|.|||+|..|.+.|..|++.|++|+++|..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 35999999999999999999999999999975
No 426
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.76 E-value=0.2 Score=46.68 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|.|||+|..|.+.|..|+++|++|.++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999864
No 427
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.74 E-value=0.19 Score=42.39 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCe-EEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLR-VGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~ 104 (442)
.|+|||+|..|...|..|++.|.. ++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 389999999999999999999995 99999975
No 428
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.74 E-value=0.11 Score=46.93 Aligned_cols=36 Identities=36% Similarity=0.692 Sum_probs=31.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEeccC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVERED 104 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~-G~-~V~liEk~~ 104 (442)
.+++.|+|||||.+|++.|..+.+. |. +|.|||..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 5679999999999999999999885 43 799999863
No 429
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.71 E-value=0.15 Score=50.67 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|.|||+|..|...|..|++.|++|+|+|+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 459999999999999999999999999999874
No 430
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.68 E-value=0.14 Score=43.86 Aligned_cols=35 Identities=37% Similarity=0.612 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
....|.|||+|..|.-.|...+..|+.|.|+|+..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 34689999999999999999999999999999974
No 431
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=92.65 E-value=0.19 Score=43.70 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~~ 106 (442)
+..|+|||.|-+|..++-.|+|.|. +.+|||...+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~ 66 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVC 66 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccc
Confidence 5889999999999999999999998 79999998754
No 432
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.57 E-value=0.23 Score=43.06 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
-.+..|+|||.|..|..+|..|++.|. +++|+|...+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 345889999999999999999999997 7999998753
No 433
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.55 E-value=0.18 Score=48.52 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.-.|+|+|+|..|+.+|..|...|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3479999999999999999999999999999864
No 434
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.49 E-value=0.18 Score=47.83 Aligned_cols=32 Identities=41% Similarity=0.601 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRG-LRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~ 103 (442)
-+|+|||+|-.|.++|..||++| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 47999999999999999999999 899999997
No 435
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.47 E-value=0.18 Score=49.85 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...|+|+|+|.+|+.++..+...|++|+++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999863
No 436
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.46 E-value=0.17 Score=40.58 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
++|+|+|..+.+.+..++..|++|+|+|..+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999874
No 437
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.39 E-value=0.19 Score=47.27 Aligned_cols=31 Identities=39% Similarity=0.586 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|.|||+|..|...|..|++.|++|+++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999999999999985
No 438
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.28 E-value=0.17 Score=52.85 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|+.++..|++|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999874
No 439
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.28 E-value=0.25 Score=44.05 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
...|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4789999999999999999999997 6999998754
No 440
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.24 E-value=0.19 Score=50.13 Aligned_cols=33 Identities=39% Similarity=0.517 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|.|||+|..|...|..|+++|+.|+|+|+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999874
No 441
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.12 E-value=0.27 Score=42.93 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLR-VGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~ 105 (442)
....|+|||+|..|..+|..|++.|.. ++|+|...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 357899999999999999999999985 999998753
No 442
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.11 E-value=0.22 Score=45.70 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~ 103 (442)
...|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 69999885
No 443
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.09 E-value=0.27 Score=39.88 Aligned_cols=33 Identities=27% Similarity=0.613 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 73 DILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
.|+|||+|..|...|..|++.|. +++|+|...+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 38999999999999999999998 6999998754
No 444
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.07 E-value=0.22 Score=46.77 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5999999999999999999999999999986
No 445
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.04 E-value=0.2 Score=46.42 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~-~V~liEk~~ 104 (442)
|.|||+|.+|...|+.|+..|+ +|+|+|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999887 999999864
No 446
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.03 E-value=0.24 Score=43.66 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe---EEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLR---VGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~---V~liEk~~ 104 (442)
..|+|+|+|-+|..+|..|.+.|.+ |.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5799999999999999999999985 99999973
No 447
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.03 E-value=0.19 Score=52.39 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|+.++..|+.|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999874
No 448
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.02 E-value=0.2 Score=48.14 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||.|.+|+..|..++. |++|+++|...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 38999999999999988885 99999999874
No 449
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.94 E-value=0.2 Score=46.02 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|.|||||..|...|+.+|..|++|+++|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999997
No 450
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.85 E-value=0.24 Score=48.79 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~--G~~V~liEk~~ 104 (442)
.|.|||.|.+|+.+|..||+. |++|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 599999999999999999998 47899999763
No 451
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.65 E-value=0.48 Score=34.53 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=29.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CCeEEEEec
Q 013476 71 PLDILVIGGGATGCGVALDAATR-GLRVGLVER 102 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~-G~~V~liEk 102 (442)
...++|+|+|.+|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 678999998
No 452
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.55 E-value=0.31 Score=43.29 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-----------CeEEEEeccCC
Q 013476 69 SNPLDILVIGGGATGCGVALDAATRG-----------LRVGLVEREDF 105 (442)
Q Consensus 69 ~~~~DVvVVGaG~aGl~aA~~La~~G-----------~~V~liEk~~~ 105 (442)
+....|+|||+|..|...+..|++.| .+++|+|...+
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 35589999999999999999999974 38999998753
No 453
>PRK08328 hypothetical protein; Provisional
Probab=91.55 E-value=0.33 Score=43.01 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
...|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4789999999999999999999998 5999988753
No 454
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.53 E-value=0.26 Score=48.76 Aligned_cols=33 Identities=36% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~ 103 (442)
.-.|+|||+|..|+-+|..|++.|. +|+|+++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3579999999999999999999998 89999885
No 455
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.41 E-value=0.34 Score=40.31 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|-|||-|..|...|..|+++|++|.++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 36899999999999999999999999999986
No 456
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.40 E-value=0.34 Score=43.36 Aligned_cols=36 Identities=28% Similarity=0.523 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
.+..|+|||+|..|..+|..|++.|. +++|+|...+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35799999999999999999999997 6999998753
No 457
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.36 E-value=0.29 Score=48.83 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..|+++|++|+|+|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999863
No 458
>PRK08223 hypothetical protein; Validated
Probab=91.36 E-value=0.36 Score=43.85 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
.+..|+|||+|-.|..+|..|++.|. +++|+|...+
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 35899999999999999999999998 6999998754
No 459
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.35 E-value=0.35 Score=45.16 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~ 104 (442)
..|+|||+|.+|...|+.++..|+ +|+|+|..+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 579999999999999999999996 899999864
No 460
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.28 E-value=0.24 Score=51.79 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|.|||+|..|...|+.++..|++|+|+|..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 359999999999999999999999999999874
No 461
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=91.26 E-value=0.45 Score=46.33 Aligned_cols=55 Identities=20% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 235 NVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 235 ~~~l~~~~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
...|.+.+++.|++|+++++|++|..+++ +++.+ +. .+| ..+.||.||+|+....
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~--~~~~~-~~--~~g--~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEANAG--GIRAL-VL--SGG--ETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEEcCC--cceEE-Ee--cCC--ccccCCEEEEcCCHHH
Confidence 34577788888999999999999998875 44322 22 123 3688999999988643
No 462
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.23 E-value=0.29 Score=44.90 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|.|||.|..|.+.|..|+++|.+|+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 4899999999999999999999999999985
No 463
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.22 E-value=0.31 Score=44.85 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~ 103 (442)
...++|+|+|-+|.++|+.|++.|.+ |.|+.+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35689999999999999999999997 9999875
No 464
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.18 E-value=0.33 Score=45.12 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G--~~V~liEk~~ 104 (442)
.|+|||+|.+|.++|+.|+..| ..+.|+|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4899999999999999999999 4799999864
No 465
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.16 E-value=0.47 Score=38.40 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=28.3
Q ss_pred cEEEECC-ChHHHHHHHHHHHCCC--eEEEEecc
Q 013476 73 DILVIGG-GATGCGVALDAATRGL--RVGLVERE 103 (442)
Q Consensus 73 DVvVVGa-G~aGl~aA~~La~~G~--~V~liEk~ 103 (442)
.|+|||+ |..|.++|+.|...+. ++.|+|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 5899999 9999999999999865 69999986
No 466
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.06 E-value=0.28 Score=48.45 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999753
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.05 E-value=0.33 Score=39.86 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..++|+|-|-.|-.+|.+|...|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 569999999999999999999999999999975
No 468
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.72 E-value=0.39 Score=44.68 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~ 104 (442)
..|.|||+|..|...|+.++..|. .|.|+|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999853
No 469
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.67 E-value=0.44 Score=42.14 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
+..|+|||+|..|...|..|++.|. +++|+|...+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 5789999999999999999999998 6999998753
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.65 E-value=0.45 Score=43.95 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 70 ~~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
....|+|||.|.+|..+|..|.+.|.+|+++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3578999999999999999999999999999886
No 471
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.59 E-value=0.32 Score=47.91 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
++|.|||.|..|...|..|+++|++|.++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 589999999999999999999999999999874
No 472
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.48 E-value=2.3 Score=43.43 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=35.4
Q ss_pred HHHcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCCh
Q 013476 242 AALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (442)
Q Consensus 242 ~~~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~s 296 (442)
.+++|++++.+.+|++|.++.. + |+.+ ....+..|.+|+|||.+.
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k---~--V~t~-----~g~~~~YDkLilATGS~p 113 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANK---V--VTTD-----AGRTVSYDKLIIATGSYP 113 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcc---e--EEcc-----CCcEeecceeEEecCccc
Confidence 4578999999999999998773 3 2332 245788899999999876
No 473
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.42 E-value=0.41 Score=47.34 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|+|+|+|.+|+.++..|...|.+|+++|...
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999999999999999999999999863
No 474
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.39 E-value=0.47 Score=41.73 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=28.1
Q ss_pred cEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476 73 DILVIG-GGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 73 DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
.|.||| +|..|.+.|..|++.|++|+++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 389997 7999999999999999999999774
No 475
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.36 E-value=0.41 Score=45.94 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4579999999999999999999999999999764
No 476
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.35 E-value=0.62 Score=40.19 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCe-EEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~~~ 105 (442)
+..|+|||+|..|..+|..|++.|.+ ++|+|...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 48899999999999999999999985 999998754
No 477
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.35 E-value=0.36 Score=44.78 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
.|+|+|+|..|...|+.|++.|..|+++-+.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 48999999999999999999998888887653
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.34 E-value=0.35 Score=50.57 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHH-HCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAA-TRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La-~~G~~V~liEk~~ 104 (442)
-.|.|||+|..|...|+.++ ..|+.|+|+|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 35999999999999999998 8899999999863
No 479
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.32 E-value=0.62 Score=43.96 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=41.4
Q ss_pred HcCceEecCeEEEEEEEcCCCCeEEEEEEEECCCCceEEEEcCEEEEccCCC
Q 013476 244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (442)
Q Consensus 244 ~~Gv~i~~~~~v~~l~~~~~g~~v~gV~~~~~~~g~~~~i~a~~VVlAtG~~ 295 (442)
+..+.++-++++++++..++| + .-+.+...++++..+++.|.||+|||..
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g-~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDG-R-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCc-e-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 346899999999999999877 6 4566665567788889999999999985
No 480
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.30 E-value=0.43 Score=43.79 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
...|+|||.|.+|..+|..|...|.+|+++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999999999999999999986
No 481
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.28 E-value=0.49 Score=41.80 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
+..|+|||.|-.|..+|..|++.|. +++|+|...+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4789999999999999999999998 7999998754
No 482
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.23 E-value=0.54 Score=40.42 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=29.4
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGG-GATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGa-G~aGl~aA~~La~~G~~V~liEk~ 103 (442)
...++|+|+ |..|..+|..|++.|.+|+++.+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999764
No 483
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.14 E-value=0.39 Score=44.33 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 74 VvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
|.|||.|..|...|..|++.|++|+++++..
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 7899999999999999999999999998863
No 484
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.53 Score=46.44 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|+|+|.|.+|+++|..|+++|++|++.|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999764
No 485
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.01 E-value=0.4 Score=49.97 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHH-HCCCeEEEEeccC
Q 013476 73 DILVIGGGATGCGVALDAA-TRGLRVGLVERED 104 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La-~~G~~V~liEk~~ 104 (442)
.|.|||+|..|...|..++ +.|+.|+|+|..+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5999999999999999998 5899999999864
No 486
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.99 E-value=0.47 Score=44.69 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHCC--------CeEEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRG--------LRVGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G--------~~V~liEk~ 103 (442)
.|.|||+|..|.+.|..|+++| .+|.|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 4899999999999999999999 999999873
No 487
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.85 E-value=0.44 Score=47.17 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
..|+|+|.|..|+++|..|.+.|++|++.|+..
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 369999999999999999999999999999764
No 488
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=89.76 E-value=0.36 Score=44.05 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=28.6
Q ss_pred CcEEEEC-CChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIG-GGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVG-aG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
..|+|.| +|..|..++++|.+.|++|+++|--
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl 35 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNL 35 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCCcEEEEecc
Confidence 3578887 8999999999999999999999864
No 489
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.65 E-value=0.6 Score=43.63 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-CeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRG-LRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G-~~V~liEk~~ 104 (442)
...|+|||+|..|.+.|+.|+..| ..++|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999999999999999998 5899999864
No 490
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.63 E-value=0.63 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
...|+|||||-+++.=+..|.+.|++|+||-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 457999999999999999999999999999653
No 491
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.57 E-value=0.52 Score=45.59 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4569999999999999999999999999999864
No 492
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.56 E-value=0.45 Score=47.16 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
-.|+|+|.|..|.++|..|.+.|.+|++.|...
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 469999999999999999999999999999653
No 493
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.53 E-value=0.59 Score=40.27 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEeccCC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~~~ 105 (442)
+..|+|||+|..|+..|..|++.|. +++|+|...+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4889999999999999999999998 5999998754
No 494
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.51 E-value=0.48 Score=47.27 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
-.|+|+|.|..|++++..|.+.|++|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999965
No 495
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.49 E-value=0.56 Score=42.75 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEecc
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~ 103 (442)
...++|+|+|.+|.+.|..|++.|.+|+++++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999875
No 496
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.45 E-value=0.56 Score=42.63 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEecc
Q 013476 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G~-~V~liEk~ 103 (442)
-.|+|+|+|-++.++++.|++.|. +|.|+.|.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 369999999999999999999997 49999885
No 497
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.45 E-value=0.43 Score=46.89 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
--+|+|||+|.+|.-.|-+|++.|.+|+++-+.+
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 3689999999999999999999999999999875
No 498
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.43 E-value=0.46 Score=45.10 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCe-EEEEecc
Q 013476 73 DILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (442)
Q Consensus 73 DVvVVGaG~aGl~aA~~La~~G~~-V~liEk~ 103 (442)
.|+|+|+|+.||.++..+...|.+ |+++|..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 599999999999998888888875 7777775
No 499
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.29 E-value=0.44 Score=46.21 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEeccC
Q 013476 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (442)
Q Consensus 71 ~~DVvVVGaG~aGl~aA~~La~~G~~V~liEk~~ 104 (442)
...|+|+|-|..|+++|..|.+.|++|++.|..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCC
Confidence 3579999999999999999999999999999765
No 500
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.20 E-value=0.32 Score=46.54 Aligned_cols=33 Identities=48% Similarity=0.655 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-------------CeEEEEeccC
Q 013476 72 LDILVIGGGATGCGVALDAATRG-------------LRVGLVERED 104 (442)
Q Consensus 72 ~DVvVVGaG~aGl~aA~~La~~G-------------~~V~liEk~~ 104 (442)
.+|+|||||..|.-.|-+|++.- .+|+|+|+.+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p 201 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence 47999999999999999998741 3899999986
Done!