Query 013477
Match_columns 442
No_of_seqs 213 out of 480
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2744 DNA-binding proteins B 100.0 2.2E-29 4.7E-34 264.8 17.7 327 114-441 126-508 (512)
2 smart00501 BRIGHT BRIGHT, ARID 99.9 2.2E-26 4.7E-31 191.1 9.2 91 148-238 1-92 (93)
3 PF01388 ARID: ARID/BRIGHT DNA 99.9 7.3E-25 1.6E-29 180.3 7.9 89 146-234 3-92 (92)
4 cd06479 ACD_HspB7_like Alpha c 99.7 6.3E-18 1.4E-22 139.2 6.7 79 357-438 2-81 (81)
5 cd06472 ACD_ScHsp26_like Alpha 99.7 1.1E-17 2.4E-22 138.1 8.0 83 355-438 1-92 (92)
6 PRK10743 heat shock protein Ib 99.7 1.6E-17 3.5E-22 148.8 9.0 87 349-439 30-124 (137)
7 PRK11597 heat shock chaperone 99.7 2.4E-17 5.2E-22 148.8 9.0 88 348-439 27-122 (142)
8 COG0071 IbpA Molecular chapero 99.7 4E-17 8.7E-22 145.7 8.7 89 351-441 38-135 (146)
9 cd06497 ACD_alphaA-crystallin_ 99.7 4.5E-17 9.7E-22 134.8 7.1 80 357-438 4-86 (86)
10 cd06471 ACD_LpsHSP_like Group 99.7 1.6E-16 3.4E-21 130.9 7.9 82 354-438 1-93 (93)
11 cd06475 ACD_HspB1_like Alpha c 99.7 1.8E-16 3.8E-21 131.3 7.6 82 356-438 3-86 (86)
12 cd06498 ACD_alphaB-crystallin_ 99.7 1.5E-16 3.4E-21 131.2 6.9 80 358-439 2-84 (84)
13 cd06476 ACD_HspB2_like Alpha c 99.7 1.6E-16 3.5E-21 131.1 6.9 80 358-438 2-83 (83)
14 cd06478 ACD_HspB4-5-6 Alpha-cr 99.6 3.6E-16 7.8E-21 128.4 7.3 79 358-438 2-83 (83)
15 cd06470 ACD_IbpA-B_like Alpha- 99.6 1E-15 2.3E-20 126.7 9.0 81 354-438 1-90 (90)
16 PF00011 HSP20: Hsp20/alpha cr 99.6 5.1E-15 1.1E-19 122.7 9.0 83 357-441 1-90 (102)
17 cd06481 ACD_HspB9_like Alpha c 99.6 2.1E-15 4.7E-20 125.0 6.1 76 361-438 5-87 (87)
18 cd06477 ACD_HspB3_Like Alpha c 99.6 4.3E-15 9.3E-20 123.1 7.0 76 360-437 4-82 (83)
19 cd06526 metazoan_ACD Alpha-cry 99.6 2.9E-15 6.2E-20 121.9 5.8 74 363-438 7-83 (83)
20 cd06482 ACD_HspB10 Alpha cryst 99.6 4.5E-15 9.7E-20 124.1 6.4 76 361-437 6-86 (87)
21 KOG2510 SWI-SNF chromatin-remo 99.5 1.6E-14 3.5E-19 150.7 9.1 125 114-246 257-383 (532)
22 cd06464 ACD_sHsps-like Alpha-c 99.5 7E-14 1.5E-18 110.9 8.2 80 357-438 1-88 (88)
23 cd06480 ACD_HspB8_like Alpha-c 99.3 1.6E-11 3.5E-16 103.7 8.0 79 358-437 10-90 (91)
24 KOG0710 Molecular chaperone (s 99.1 1.3E-10 2.7E-15 109.7 5.6 88 353-441 84-182 (196)
25 cd00298 ACD_sHsps_p23-like Thi 99.1 6.1E-10 1.3E-14 84.2 7.7 78 359-438 2-80 (80)
26 cd06469 p23_DYX1C1_like p23_li 98.8 1.7E-08 3.7E-13 79.9 8.9 70 359-441 2-71 (78)
27 KOG3591 Alpha crystallins [Pos 98.7 4.4E-08 9.5E-13 91.5 8.2 87 354-441 63-151 (173)
28 cd06463 p23_like Proteins cont 98.4 1.5E-06 3.2E-11 67.8 9.0 74 360-441 3-76 (84)
29 PF05455 GvpH: GvpH; InterPro 98.0 2.6E-05 5.5E-10 73.7 8.9 73 356-440 94-169 (177)
30 cd06466 p23_CS_SGT1_like p23_l 97.7 0.00016 3.5E-09 57.7 8.1 75 359-441 3-77 (84)
31 PF04969 CS: CS domain; Inter 96.8 0.014 3E-07 45.2 9.4 77 354-438 1-79 (79)
32 cd06465 p23_hB-ind1_like p23_l 96.3 0.027 5.9E-07 47.9 8.8 77 355-440 2-78 (108)
33 cd06489 p23_CS_hSgt1_like p23_ 95.3 0.13 2.9E-06 41.7 8.4 75 359-441 3-77 (84)
34 cd06493 p23_NUDCD1_like p23_NU 95.2 0.18 3.9E-06 41.3 9.0 72 359-441 4-77 (85)
35 cd06468 p23_CacyBP p23_like do 94.9 0.23 4.9E-06 40.7 8.8 75 358-440 6-84 (92)
36 cd06467 p23_NUDC_like p23_like 94.6 0.27 5.9E-06 39.4 8.3 72 359-441 4-77 (85)
37 cd06494 p23_NUDCD2_like p23-li 93.2 0.7 1.5E-05 39.4 8.7 77 350-440 2-82 (93)
38 PF08190 PIH1: pre-RNA process 92.5 0.62 1.3E-05 46.1 8.6 70 358-437 256-327 (328)
39 cd06488 p23_melusin_like p23_l 91.4 1.7 3.7E-05 35.9 8.7 77 357-441 4-80 (87)
40 PLN03088 SGT1, suppressor of 78.3 10 0.00022 38.8 8.5 79 354-440 157-235 (356)
41 PF00249 Myb_DNA-binding: Myb- 76.2 4.1 9E-05 29.9 3.7 38 182-230 11-48 (48)
42 cd00237 p23 p23 binds heat sho 75.6 27 0.00058 30.4 9.1 76 355-440 3-78 (106)
43 cd06492 p23_mNUDC_like p23-lik 74.8 24 0.00052 29.5 8.3 70 360-440 5-78 (87)
44 cd06495 p23_NUDCD3_like p23-li 59.0 70 0.0015 27.8 8.3 80 353-440 4-86 (102)
45 cd06490 p23_NCB5OR p23_like do 51.4 1.2E+02 0.0026 25.1 8.3 74 359-441 4-80 (87)
46 cd00167 SANT 'SWI3, ADA2, N-Co 49.7 27 0.00058 23.7 3.5 36 182-229 9-44 (45)
47 PF09441 Abp2: ARS binding pro 49.3 19 0.00041 34.5 3.4 41 169-213 44-84 (175)
48 PF13921 Myb_DNA-bind_6: Myb-l 47.6 28 0.00061 26.3 3.6 36 182-230 8-43 (60)
49 KOG1309 Suppressor of G2 allel 47.3 63 0.0014 31.6 6.7 79 354-440 4-82 (196)
50 KOG2744 DNA-binding proteins B 46.8 4.5 9.7E-05 44.3 -1.2 94 144-237 304-399 (512)
51 KOG3591 Alpha crystallins [Pos 33.7 54 0.0012 31.1 4.0 31 368-398 121-151 (173)
52 smart00717 SANT SANT SWI3, AD 31.9 81 0.0018 21.5 3.7 26 200-230 22-47 (49)
53 PF10545 MADF_DNA_bdg: Alcohol 27.4 46 0.001 25.9 2.0 38 197-234 24-64 (85)
54 PF08914 Myb_DNA-bind_2: Rap1 25.7 86 0.0019 25.4 3.3 50 182-235 12-62 (65)
55 cd06471 ACD_LpsHSP_like Group 23.5 1.1E+02 0.0023 25.1 3.6 28 364-392 63-90 (93)
56 PF04972 BON: BON domain; Int 22.7 86 0.0019 23.7 2.7 26 372-398 12-37 (64)
57 PF13873 Myb_DNA-bind_5: Myb/S 22.6 68 0.0015 25.4 2.2 54 178-232 14-71 (78)
58 cd06480 ACD_HspB8_like Alpha-c 22.5 93 0.002 26.6 3.1 28 366-393 62-89 (91)
59 PF13349 DUF4097: Domain of un 22.4 4.9E+02 0.011 22.8 7.8 73 356-435 68-147 (166)
60 PLN03212 Transcription repress 22.0 90 0.002 31.7 3.3 41 182-233 35-75 (249)
61 TIGR01557 myb_SHAQKYF myb-like 21.6 1.5E+02 0.0032 23.4 3.8 25 203-231 30-55 (57)
62 PRK02363 DNA-directed RNA poly 20.3 45 0.00097 30.4 0.8 65 152-226 4-71 (129)
63 COG3343 RpoE DNA-directed RNA 20.2 46 0.001 32.1 0.9 68 149-226 12-82 (175)
No 1
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=99.96 E-value=2.2e-29 Score=264.79 Aligned_cols=327 Identities=24% Similarity=0.262 Sum_probs=246.5
Q ss_pred CCCCCCCCCcchhhcccCCccccccc-CC-CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhc
Q 013477 114 HGESSTSKAEDESVRKSKNWLNDIEM-GE-ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRL 190 (442)
Q Consensus 114 ~~~~~tpk~~~~~~~~~~~~~~d~~~-~~-~~~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~r 190 (442)
+..+++++....+....+.+...... .. ++++.+..++.||+.|+.||+.+|++| ++|+|+|++||||.||.+|+++
T Consensus 126 q~~~sq~~~~~~~~~~~~~~~~~~s~~~~~~~e~~~~~~eeF~~dl~~f~~~~~~~~~~iPii~~~~ldL~~Ly~lV~s~ 205 (512)
T KOG2744|consen 126 QLPPSQPEVFPTPVIQKKTKRARRSNLPLYETEGVPKSSEEFMEDLRRFMKKRGTKVKSIPIIGGQPLDLHWLYALVTSR 205 (512)
T ss_pred cCCccCCccCCCccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCcceeccccCCCcchHHHHHHHHhcC
Confidence 45566666666666666677775443 33 456888899999999999999999999 5999999999999999999999
Q ss_pred CcccccccCcchhHhhhhcCCCC-CCCcHHHHHHHHHHHhHHHHHHhhhhc--CCCCCCCCCCC-CCCCCCCCCCCCCCC
Q 013477 191 GGYEVVTASKLWRQVGESFHPPK-TCTTVSWTFRIFYEKALLEYEKHKRLS--GELQLPASSFP-QPTNAGKEASGYQTP 266 (442)
Q Consensus 191 GGydkVt~~KkWreVa~~LglP~-t~TSas~~LR~~YeKyLlpYE~~~~~~--G~~~~P~~~~~-e~~~~eke~~~~~~~ 266 (442)
||+++|+..|+|++|...|++|. ++|+++|.||++|.|+|++||+.+... +.+..|.+... ......+|..-+..+
T Consensus 206 GG~~~V~~~k~Wrev~~~l~~pt~tiTsaaf~lr~~y~K~L~~ye~~~~~~~~~pln~p~~~~~~a~~~~~rE~~~~~~~ 285 (512)
T KOG2744|consen 206 GGLDEVTNKKLWREVIDGLNFPTPTITSAAFTLRKQYLKLLFEYECEFEKNRHVPLNSPAELSEEASSSNRREGRRHELS 285 (512)
T ss_pred CchhHhhhhhhHHHHhccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccccccccccccccccccC
Confidence 99999999999999999999999 999999999999999999999997755 66666654433 122222222222223
Q ss_pred CC-chhhh---------HHHHHhccccccccccCCCcccCcccCCCCCCChhHhhhcccccC------CCCCC------C
Q 013477 267 GS-SRARR---------DAAARAMQGWHAQRLLGHGEVAEPIIKDKSLPSPARREKQLKNIG------LPKNR------T 324 (442)
Q Consensus 267 gs-gRarr---------daaaramqGwhs~r~lg~g~v~~p~ikdk~~~~~~~r~k~lk~~~------~~k~~------~ 324 (442)
++ ++... .+||.+|.||+.++++..+.+..+.|++......+. -..+|-++ ..-+. .
T Consensus 286 ~~~~~~~~~~~~~~~~~~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~-~~~~k~~~~~~~~~~~~~~p~~~~~~ 364 (512)
T KOG2744|consen 286 PSKEFQANGPSEEEPAEAEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPD-LNLFKVFRLECHQGGDSNIPSALQWK 364 (512)
T ss_pred cchhhccCCcccccccccccchhhhccccccCceeccCcchhccCccccccCc-ccccccccceeeccCcCcCCchhhee
Confidence 33 33333 688999999999999999999999998755211111 00111111 00000 0
Q ss_pred ---------------hhH----HHHHHHhhhh-----cccceeeeecCCCCCcccceeeecCCeEEEEEecCCCCccceE
Q 013477 325 ---------------LDS----AEKAALTEAD-----KQIITEIVDVGPPADWVKINVREAKDCYEVYALVPGLLREEVR 380 (442)
Q Consensus 325 ---------------~~~----~~~~~~~~~~-----k~~d~~v~d~g~~ad~p~iNv~~T~d~~EVyA~~PGl~~~~v~ 380 (442)
.+. ..+..+.+-. +..-..+.+..|...|+..+..+..++++..+++|+..+.+|.
T Consensus 365 ~~~~~~~~l~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~e~~~~~~al~lt~~~~~~~~~ 444 (512)
T KOG2744|consen 365 QVAKDLGLLPNLNSAASSNTKLAYKKSLSENEEYCSINSVNIEFPEALPKEIKVNKQLRELENLLEALALTPSNAKTEIK 444 (512)
T ss_pred ccccccccccccccccccccccccchhhccccccchhhhccccccccccchhhhccchHHHHHhHHHhccCcccccccee
Confidence 000 0011111111 1123456788899999888899999999999999999999999
Q ss_pred EeecCCceEEEecccCCCCCC---CCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEeeccCC
Q 013477 381 VQSDPAGRLVITGEPEQVDNP---WGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFEGS 441 (442)
Q Consensus 381 V~~~~~g~L~IsGer~~~~~~---~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k~~~ 441 (442)
|++++.|...+-........+ |...+++++.+-+...+++.++|.....|-.++.+++...
T Consensus 445 ~~~e~ng~~~~gvl~~q~~~~~~~~~~~p~~~~~s~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 508 (512)
T KOG2744|consen 445 VQCEENGTGYSGVLFAQIELPLPSPISAPPSHVNSTSGSSNPENISASHSPLSETYLATPFAHT 508 (512)
T ss_pred eecccccccccceeeecccccccCCCcCccccccCCCCCCCccccccccCCCccccccCCCccc
Confidence 999999998888888887766 8888999999999999999999999999999999988753
No 2
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=99.93 E-value=2.2e-26 Score=191.10 Aligned_cols=91 Identities=32% Similarity=0.604 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHH
Q 013477 148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFY 226 (442)
Q Consensus 148 rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~Y 226 (442)
++++.|+++|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|.+||+.||++.+++++++.||++|
T Consensus 1 ~~~~~F~~~L~~F~~~~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y 80 (93)
T smart00501 1 RERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHY 80 (93)
T ss_pred CcHHHHHHHHHHHHHHcCCcCCcCCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHH
Confidence 368999999999999999998 8999999999999999999999999999999999999999999988999999999999
Q ss_pred HHhHHHHHHhhh
Q 013477 227 EKALLEYEKHKR 238 (442)
Q Consensus 227 eKyLlpYE~~~~ 238 (442)
++||++||++..
T Consensus 81 ~k~L~~yE~~~~ 92 (93)
T smart00501 81 ERYLLPFERFLR 92 (93)
T ss_pred HHHhHHHHHHhh
Confidence 999999999864
No 3
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=99.91 E-value=7.3e-25 Score=180.30 Aligned_cols=89 Identities=31% Similarity=0.657 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHH
Q 013477 146 TPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRI 224 (442)
Q Consensus 146 t~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~ 224 (442)
..++++.|++.|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|.+||+.||++..+++.+..||+
T Consensus 3 ~~~~~~~F~~~L~~f~~~~g~~~~~~P~i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~ 82 (92)
T PF01388_consen 3 NTREREQFLEQLREFHESRGTPIDRPPVIGGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQ 82 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSSSSS-SEETTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCcCCCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHH
Confidence 45789999999999999999997 99999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHhHHHHH
Q 013477 225 FYEKALLEYE 234 (442)
Q Consensus 225 ~YeKyLlpYE 234 (442)
+|++||++||
T Consensus 83 ~Y~~~L~~fE 92 (92)
T PF01388_consen 83 HYEKYLLPFE 92 (92)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHhHhhC
Confidence 9999999998
No 4
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.72 E-value=6.3e-18 Score=139.24 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=73.4
Q ss_pred eeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEE-eeCcEEEEE
Q 013477 357 NVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLYVR 435 (442)
Q Consensus 357 Nv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~I~ 435 (442)
||.++++.|.|.|.+||++|++|+|+++ +|.|+|+|+|+... ....++|+|.|.||.+||+++++|.| . ||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~-~~~L~I~ger~~~~-~~~~g~F~R~~~LP~~vd~e~v~A~l~~-~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS-NNQIEVHAEKLASD-GTVMNTFTHKCQLPEDVDPTSVSSSLGE-DGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccC-CCEEEEEEEEEECCCCcCHHHeEEEecC-CCEEEEE
Confidence 8999999999999999999999999999 99999999987543 45678999999999999999999997 8 9999999
Q ss_pred eec
Q 013477 436 VPF 438 (442)
Q Consensus 436 i~k 438 (442)
++|
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 986
No 5
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.72 E-value=1.1e-17 Score=138.13 Aligned_cols=83 Identities=27% Similarity=0.403 Sum_probs=75.1
Q ss_pred cceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC---------CCCCCcceEeeeCCCCCCCCCceeE
Q 013477 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN---------PWGITPFKKVVILPSRIDPLQTSAV 425 (442)
Q Consensus 355 ~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~---------~~~~~~FrRvv~LP~~vDp~~v~A~ 425 (442)
++||.+|+++|.|+|.+||+.+++|+|+++..+.|+|+|+++.... ++..+.|.|.|.||..||+++++|.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 4799999999999999999999999999994458999999875421 4667899999999999999999999
Q ss_pred EeeCcEEEEEeec
Q 013477 426 VSLHGRLYVRVPF 438 (442)
Q Consensus 426 ~~~~G~L~I~i~k 438 (442)
|. ||+|.|+|||
T Consensus 81 ~~-nGvL~I~lPK 92 (92)
T cd06472 81 LE-NGVLTVTVPK 92 (92)
T ss_pred EE-CCEEEEEecC
Confidence 99 9999999997
No 6
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.72 E-value=1.6e-17 Score=148.77 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=78.4
Q ss_pred CCCCcccceee-ecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC-------CCCCCcceEeeeCCCCCCCC
Q 013477 349 PPADWVKINVR-EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN-------PWGITPFKKVVILPSRIDPL 420 (442)
Q Consensus 349 ~~ad~p~iNv~-~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~-------~~~~~~FrRvv~LP~~vDp~ 420 (442)
+...||++||. .+++.|.|.|.+||+++++|+|+++ +|.|+|+|+++.... ++..++|+|+|+||..||.+
T Consensus 30 ~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~ 108 (137)
T PRK10743 30 SNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQ-DNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR 108 (137)
T ss_pred ccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC
Confidence 45678999999 5999999999999999999999999 999999999876522 46678999999999999999
Q ss_pred CceeEEeeCcEEEEEeecc
Q 013477 421 QTSAVVSLHGRLYVRVPFE 439 (442)
Q Consensus 421 ~v~A~~~~~G~L~I~i~k~ 439 (442)
+ |.|. ||+|+|+|||.
T Consensus 109 ~--A~~~-dGVL~I~lPK~ 124 (137)
T PRK10743 109 G--ANLV-NGLLYIDLERV 124 (137)
T ss_pred c--CEEe-CCEEEEEEeCC
Confidence 4 9999 99999999985
No 7
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.71 E-value=2.4e-17 Score=148.77 Aligned_cols=88 Identities=20% Similarity=0.377 Sum_probs=79.0
Q ss_pred CCCCCcccceeee-cCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC-------CCCCCcceEeeeCCCCCCC
Q 013477 348 GPPADWVKINVRE-AKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN-------PWGITPFKKVVILPSRIDP 419 (442)
Q Consensus 348 g~~ad~p~iNv~~-T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~-------~~~~~~FrRvv~LP~~vDp 419 (442)
..++.||++||.+ +++.|.|.|.+||+++++|+|+++ +|.|+|+|+++..+. ++..++|+|.|+||..||+
T Consensus 27 ~~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~ 105 (142)
T PRK11597 27 GESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE-GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEV 105 (142)
T ss_pred CccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE-CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCccc
Confidence 4467799999998 577999999999999999999999 999999999875422 5677899999999999999
Q ss_pred CCceeEEeeCcEEEEEeecc
Q 013477 420 LQTSAVVSLHGRLYVRVPFE 439 (442)
Q Consensus 420 ~~v~A~~~~~G~L~I~i~k~ 439 (442)
+ +|.|. ||||.|+|||.
T Consensus 106 ~--~A~~~-nGVL~I~lPK~ 122 (142)
T PRK11597 106 S--GATFV-NGLLHIDLIRN 122 (142)
T ss_pred C--cCEEc-CCEEEEEEecc
Confidence 9 69999 99999999985
No 8
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4e-17 Score=145.69 Aligned_cols=89 Identities=25% Similarity=0.454 Sum_probs=81.5
Q ss_pred CCcccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--C-------CCCCCcceEeeeCCCCCCCCC
Q 013477 351 ADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--N-------PWGITPFKKVVILPSRIDPLQ 421 (442)
Q Consensus 351 ad~p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~-------~~~~~~FrRvv~LP~~vDp~~ 421 (442)
..||.+||.+|++.+.|.|-+||+++++|+|+++ .+.|+|+|+++... . ++..+.|.|+|.||..||++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~-~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE-CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 5789999999999999999999999999999999 99999999998631 1 345679999999999999999
Q ss_pred ceeEEeeCcEEEEEeeccCC
Q 013477 422 TSAVVSLHGRLYVRVPFEGS 441 (442)
Q Consensus 422 v~A~~~~~G~L~I~i~k~~~ 441 (442)
++|.|. ||+|+|+|||..+
T Consensus 117 ~~A~~~-nGvL~I~lpk~~~ 135 (146)
T COG0071 117 IKAKYK-NGLLTVTLPKAEP 135 (146)
T ss_pred eeeEee-CcEEEEEEecccc
Confidence 999999 9999999999764
No 9
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.69 E-value=4.5e-17 Score=134.80 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=71.5
Q ss_pred eeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC--CCCCCcceEeeeCCCCCCCCCceeEE-eeCcEEE
Q 013477 357 NVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--PWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLY 433 (442)
Q Consensus 357 Nv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~--~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~ 433 (442)
+|.++++.|.|+|.+||++|++|+|+++ +|.|+|+|+++.... .+....|+|.|.||..||+++++|.| . ||+|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~-dGvL~ 81 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL-DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSA-DGMLT 81 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CCEEE
Confidence 6899999999999999999999999999 999999999754322 23334799999999999999999999 7 99999
Q ss_pred EEeec
Q 013477 434 VRVPF 438 (442)
Q Consensus 434 I~i~k 438 (442)
|++||
T Consensus 82 I~~PK 86 (86)
T cd06497 82 FSGPK 86 (86)
T ss_pred EEecC
Confidence 99997
No 10
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.67 E-value=1.6e-16 Score=130.91 Aligned_cols=82 Identities=24% Similarity=0.450 Sum_probs=75.0
Q ss_pred ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC-----------CCCCCcceEeeeCCCCCCCCCc
Q 013477 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN-----------PWGITPFKKVVILPSRIDPLQT 422 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~-----------~~~~~~FrRvv~LP~~vDp~~v 422 (442)
|++||.+|++.|.|.+.+||+++++|+|+++ .+.|+|+|+++.... ++..++|+|.|.|| ++|++++
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 4799999999999999999999999999999 899999999976411 35678999999999 7999999
Q ss_pred eeEEeeCcEEEEEeec
Q 013477 423 SAVVSLHGRLYVRVPF 438 (442)
Q Consensus 423 ~A~~~~~G~L~I~i~k 438 (442)
+|.|. ||+|+|++||
T Consensus 79 ~A~~~-dGvL~I~lPK 93 (93)
T cd06471 79 KAKYE-NGVLKITLPK 93 (93)
T ss_pred EEEEE-CCEEEEEEcC
Confidence 99999 9999999997
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.66 E-value=1.8e-16 Score=131.26 Aligned_cols=82 Identities=27% Similarity=0.405 Sum_probs=73.0
Q ss_pred ceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC--CCCCCcceEeeeCCCCCCCCCceeEEeeCcEEE
Q 013477 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--PWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (442)
Q Consensus 356 iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~--~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (442)
.+|.+|++.|.|.|.+||++|++|+|+++ .+.|+|+|+++.... .+....|+|+|+||..||+++++|.|+-||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTK-DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 57999999999999999999999999999 899999999875432 233359999999999999999999995599999
Q ss_pred EEeec
Q 013477 434 VRVPF 438 (442)
Q Consensus 434 I~i~k 438 (442)
|++|.
T Consensus 82 I~lP~ 86 (86)
T cd06475 82 VEAPI 86 (86)
T ss_pred EEecC
Confidence 99983
No 12
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.66 E-value=1.5e-16 Score=131.21 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=70.4
Q ss_pred eeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceeEE-eeCcEEEE
Q 013477 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLYV 434 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~I 434 (442)
+..+++.|.|.|.+||++|++|+|+++ ++.|+|+|+++... ..+....|+|.|.||.+||+++++|.| . ||+|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~-dGvL~I 79 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL-GDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSP-DGVLTV 79 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCC-CCEEEE
Confidence 457899999999999999999999999 99999999876542 223344899999999999999999999 6 999999
Q ss_pred Eeecc
Q 013477 435 RVPFE 439 (442)
Q Consensus 435 ~i~k~ 439 (442)
++||.
T Consensus 80 ~lPk~ 84 (84)
T cd06498 80 CGPRK 84 (84)
T ss_pred EEeCC
Confidence 99983
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.66 E-value=1.6e-16 Score=131.08 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=71.1
Q ss_pred eeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCC--CCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEE
Q 013477 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV--DNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVR 435 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~--~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~ 435 (442)
|-..++.|+|.+.+||+.|++|+|+++ +|.|+|+|+++.. +..+....|+|.|.||..||+++|+|.|+=||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTV-DNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 456789999999999999999999999 9999999997654 2345566999999999999999999999339999999
Q ss_pred eec
Q 013477 436 VPF 438 (442)
Q Consensus 436 i~k 438 (442)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.64 E-value=3.6e-16 Score=128.35 Aligned_cols=79 Identities=25% Similarity=0.321 Sum_probs=69.9
Q ss_pred eeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC--CCCCCcceEeeeCCCCCCCCCceeEE-eeCcEEEE
Q 013477 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--PWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLYV 434 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~--~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~I 434 (442)
|..+++.|.|.+.+||++|++|+|+++ .+.|+|+|++..... .+-...|+|.|.||.+||+++++|.| . ||+|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~-dGvL~I 79 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVL-GDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSA-DGVLTI 79 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECC-CCEEEE
Confidence 678999999999999999999999999 899999999764322 22234799999999999999999999 7 999999
Q ss_pred Eeec
Q 013477 435 RVPF 438 (442)
Q Consensus 435 ~i~k 438 (442)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9997
No 15
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.63 E-value=1e-15 Score=126.68 Aligned_cols=81 Identities=16% Similarity=0.330 Sum_probs=73.5
Q ss_pred ccceeeecC-CeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC--------CCCCCcceEeeeCCCCCCCCCcee
Q 013477 354 VKINVREAK-DCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--------PWGITPFKKVVILPSRIDPLQTSA 424 (442)
Q Consensus 354 p~iNv~~T~-d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~--------~~~~~~FrRvv~LP~~vDp~~v~A 424 (442)
|++||.+++ +.|.|.+.+||+.+++|+|+++ ++.|+|+|+|+.... ++..+.|+|.|+||..+|.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 679999985 9999999999999999999999 999999999888742 35578999999999999985 89
Q ss_pred EEeeCcEEEEEeec
Q 013477 425 VVSLHGRLYVRVPF 438 (442)
Q Consensus 425 ~~~~~G~L~I~i~k 438 (442)
.|. ||+|.|++++
T Consensus 78 ~~~-~GvL~I~l~~ 90 (90)
T cd06470 78 ELE-NGLLTIDLER 90 (90)
T ss_pred EEe-CCEEEEEEEC
Confidence 999 9999999985
No 16
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.59 E-value=5.1e-15 Score=122.68 Aligned_cols=83 Identities=25% Similarity=0.536 Sum_probs=69.2
Q ss_pred eeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCC--CC-----CCCCCcceEeeeCCCCCCCCCceeEEeeC
Q 013477 357 NVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV--DN-----PWGITPFKKVVILPSRIDPLQTSAVVSLH 429 (442)
Q Consensus 357 Nv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~--~~-----~~~~~~FrRvv~LP~~vDp~~v~A~~~~~ 429 (442)
+|.+++++|.|.+-+||+++++|+|+++ .+.|+|+|++... +. ++..++|.|.|.||..+|+++++|.|. |
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~-~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVD-DNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE-N 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEE-TTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET-T
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEe-cCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec-C
Confidence 5789999999999999999999999999 8999999998822 22 466679999999999999999999998 9
Q ss_pred cEEEEEeeccCC
Q 013477 430 GRLYVRVPFEGS 441 (442)
Q Consensus 430 G~L~I~i~k~~~ 441 (442)
|+|+|++||...
T Consensus 79 GvL~I~~pk~~~ 90 (102)
T PF00011_consen 79 GVLTITIPKKEE 90 (102)
T ss_dssp SEEEEEEEBSSS
T ss_pred CEEEEEEEcccc
Confidence 999999999864
No 17
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.58 E-value=2.1e-15 Score=125.04 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=67.8
Q ss_pred cCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--CC----CCCCcceEeeeCCCCCCCCCceeEE-eeCcEEE
Q 013477 361 AKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NP----WGITPFKKVVILPSRIDPLQTSAVV-SLHGRLY 433 (442)
Q Consensus 361 T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~~----~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~ 433 (442)
.++.|+|.+.+||+.|++|+|+++ ++.|+|+|+++... +. +..+.|+|+|.||..||+++++|.| . ||+|.
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~-dGvL~ 82 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVD-GRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSP-SGHLH 82 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEE-CCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCC-CceEE
Confidence 568999999999999999999999 99999999976542 11 2347999999999999999999999 7 99999
Q ss_pred EEeec
Q 013477 434 VRVPF 438 (442)
Q Consensus 434 I~i~k 438 (442)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.57 E-value=4.3e-15 Score=123.08 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=67.8
Q ss_pred ecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCC--CCCCCCCcceEeeeCCCCCCCCCceeEE-eeCcEEEEEe
Q 013477 360 EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV--DNPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLYVRV 436 (442)
Q Consensus 360 ~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~--~~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~I~i 436 (442)
.+++.|.|.|-+||+.|++|+|+++ .|.|+|+|+++.. +..+...+|+|.|+||.+||+++++|.| . ||+|.|..
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~-dGvL~I~~ 81 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVF-EGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCH-DGILVVET 81 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcC-CCEEEEEe
Confidence 5789999999999999999999999 9999999998765 2334345999999999999999999998 7 99999986
Q ss_pred e
Q 013477 437 P 437 (442)
Q Consensus 437 ~ 437 (442)
+
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 4
No 19
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.57 E-value=2.9e-15 Score=121.85 Aligned_cols=74 Identities=26% Similarity=0.445 Sum_probs=68.3
Q ss_pred CeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceeEEeeC-cEEEEEeec
Q 013477 363 DCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVVSLH-GRLYVRVPF 438 (442)
Q Consensus 363 d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~-G~L~I~i~k 438 (442)
+.|.|.+.+||+.|++|+|+++ .+.|+|+|+++... ..+..+.|+|.|.||.+||+++++|.|+ + |+|+|++||
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~-~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVS-DNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEE-CCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEEEEEecC
Confidence 6999999999999999999999 89999999988764 3455679999999999999999999999 7 999999997
No 20
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.56 E-value=4.5e-15 Score=124.06 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=68.0
Q ss_pred cCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC-----CCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEE
Q 013477 361 AKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN-----PWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVR 435 (442)
Q Consensus 361 T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~-----~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~ 435 (442)
.++.|.|.|.+||+++++|+|+++ +|.|+|+|+|+.... ++..++|+|+|.||..||+++|+|.|+-+|+|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~-~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK-DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 467999999999999999999999 999999999876532 46778999999999999999999999955599997
Q ss_pred ee
Q 013477 436 VP 437 (442)
Q Consensus 436 i~ 437 (442)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 65
No 21
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]
Probab=99.53 E-value=1.6e-14 Score=150.73 Aligned_cols=125 Identities=20% Similarity=0.332 Sum_probs=112.7
Q ss_pred CCCCCCCCCcchhhcccCCcccccccCC-CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcC
Q 013477 114 HGESSTSKAEDESVRKSKNWLNDIEMGE-ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLG 191 (442)
Q Consensus 114 ~~~~~tpk~~~~~~~~~~~~~~d~~~~~-~~~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rG 191 (442)
.+...+|.++....++..++.+++++++ ++.+...+++.++++|+.|++++.+++ .+|.++.++||||+||..|.++|
T Consensus 257 ~~~~~apiP~s~srss~ssttt~~~iTklYelg~qp~r~~wvDR~raF~ee~~Sp~t~~p~~gakPldl~rlYvsvke~g 336 (532)
T KOG2510|consen 257 NKADGAPIPESPSRSSSSSTTTNEKITKLYELGGQPERKEWVDRLRAFTEERASPMTNLPAVGAKPLDLYRLYVSVKEIG 336 (532)
T ss_pred hhhccCCCCCCcccccccceecccccccccccccCcchhhHHHHHHHHHHhhcCcccccccccccchhHHHHHHHHHHhc
Confidence 4556788898888888889999999999 777778899999999999999999999 89999999999999999999999
Q ss_pred cccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHhhhhcCCCCCC
Q 013477 192 GYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLP 246 (442)
Q Consensus 192 GydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~~~~~~G~~~~P 246 (442)
|+..|+.+| |+++.-|| +++++.||++|.+||+.|||+|.+ |+.+++
T Consensus 337 g~~~v~knk--rd~a~~lg-----ssaa~~l~k~y~~~lf~fec~f~R-g~e~p~ 383 (532)
T KOG2510|consen 337 GLTQVNKNK--RDLATNLG-----SSAASSLKKQYIQYLFAFECKFER-GEEPPP 383 (532)
T ss_pred cceeeccch--hhhhhccc-----hHHHHHHHHHHHHHHHhhceeeec-cCCCCH
Confidence 999999999 99999988 578999999999999999999885 444333
No 22
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.50 E-value=7e-14 Score=110.87 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=72.8
Q ss_pred eeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC--------CCCCCcceEeeeCCCCCCCCCceeEEee
Q 013477 357 NVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--------PWGITPFKKVVILPSRIDPLQTSAVVSL 428 (442)
Q Consensus 357 Nv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~--------~~~~~~FrRvv~LP~~vDp~~v~A~~~~ 428 (442)
++.++++.|.|.+.+||+++++|+|+++ .+.|+|+|++..... ++..+.|+|.|.||..+|+++++|.|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~-~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~- 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE- 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe-
Confidence 3678889999999999999999999999 799999999887643 344779999999999999999999999
Q ss_pred CcEEEEEeec
Q 013477 429 HGRLYVRVPF 438 (442)
Q Consensus 429 ~G~L~I~i~k 438 (442)
||+|.|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999996
No 23
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.26 E-value=1.6e-11 Score=103.69 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=70.2
Q ss_pred eeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCC--CCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEE
Q 013477 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNP--WGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVR 435 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~--~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~ 435 (442)
+-.+.+.|.|.--|.|+.|+||+|++. .+.|+|+|+++..+.+ +....|+|.|.||..||++.|+|.++=||+|+|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~-~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTK-DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEE-CCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 445788999999999999999999999 9999999998765332 3345999999999999999999999999999999
Q ss_pred ee
Q 013477 436 VP 437 (442)
Q Consensus 436 i~ 437 (442)
+|
T Consensus 89 aP 90 (91)
T cd06480 89 AP 90 (91)
T ss_pred cC
Confidence 87
No 24
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-10 Score=109.70 Aligned_cols=88 Identities=28% Similarity=0.414 Sum_probs=79.5
Q ss_pred cccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC-----------CCCCCcceEeeeCCCCCCCCC
Q 013477 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN-----------PWGITPFKKVVILPSRIDPLQ 421 (442)
Q Consensus 353 ~p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~-----------~~~~~~FrRvv~LP~~vDp~~ 421 (442)
++.++|.++++++++..-+||+..++++|++++.+.|+|+|+++.... ++..+.|.|+|.||+.+|-++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 566779999999999999999999999999995558999999988732 567779999999999999999
Q ss_pred ceeEEeeCcEEEEEeeccCC
Q 013477 422 TSAVVSLHGRLYVRVPFEGS 441 (442)
Q Consensus 422 v~A~~~~~G~L~I~i~k~~~ 441 (442)
++|.|. ||+|.|.|||...
T Consensus 164 ikA~~~-nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 164 IKAEME-NGVLTVVVPKLEP 182 (196)
T ss_pred HHHHhh-CCeEEEEEecccc
Confidence 999999 9999999999753
No 25
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.06 E-value=6.1e-10 Score=84.24 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=69.6
Q ss_pred eecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC-CCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEee
Q 013477 359 REAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD-NPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVP 437 (442)
Q Consensus 359 ~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~-~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~ 437 (442)
..+++.|.|+..+||+.+++|+|.++ .+.|+|+|.....+ .......|++.+.||..||+++++|.|. +|+|.|+++
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~~~l~i~l~ 79 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLE-NGVLEITLP 79 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEE-CCEEEEEEc
Confidence 45779999999999999999999999 79999999966543 2345569999999999999999999999 999999998
Q ss_pred c
Q 013477 438 F 438 (442)
Q Consensus 438 k 438 (442)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 6
No 26
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.85 E-value=1.7e-08 Score=79.93 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=64.5
Q ss_pred eecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEeec
Q 013477 359 REAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPF 438 (442)
Q Consensus 359 ~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k 438 (442)
..|++.+.|++++||+.+++++|.++ ...|+|+| .+|.+.+.||..|||+.++|.|. +|+|.|+++|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~-~~~l~i~~-----------~~~~~~~~l~~~I~~e~~~~~~~-~~~l~i~L~K 68 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCS-DLYLKVNF-----------PPYLFELDLAAPIDDEKSSAKIG-NGVLVFTLVK 68 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEe-cCEEEEcC-----------CCEEEEEeCcccccccccEEEEe-CCEEEEEEEe
Confidence 36889999999999999999999999 78899988 25999999999999999999999 9999999999
Q ss_pred cCC
Q 013477 439 EGS 441 (442)
Q Consensus 439 ~~~ 441 (442)
.+.
T Consensus 69 ~~~ 71 (78)
T cd06469 69 KEP 71 (78)
T ss_pred CCC
Confidence 863
No 27
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.4e-08 Score=91.53 Aligned_cols=87 Identities=25% Similarity=0.413 Sum_probs=76.5
Q ss_pred ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCC--cceEeeeCCCCCCCCCceeEEeeCcE
Q 013477 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGIT--PFKKVVILPSRIDPLQTSAVVSLHGR 431 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~--~FrRvv~LP~~vDp~~v~A~~~~~G~ 431 (442)
...+|-.+++.|+|.--|-...|+||.|++. ++.|.|.|+-..-+.+-|.. .|.|.+.||.++||++|++.++=||+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~-~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTD-DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeC-CCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCce
Confidence 3567889999999999999999999999999 88999999866554443433 99999999999999999999999999
Q ss_pred EEEEeeccCC
Q 013477 432 LYVRVPFEGS 441 (442)
Q Consensus 432 L~I~i~k~~~ 441 (442)
|+|.+|+-..
T Consensus 142 LtI~ap~~~~ 151 (173)
T KOG3591|consen 142 LTIEAPKPPP 151 (173)
T ss_pred EEEEccCCCC
Confidence 9999998653
No 28
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.44 E-value=1.5e-06 Score=67.77 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=66.3
Q ss_pred ecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEeecc
Q 013477 360 EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPFE 439 (442)
Q Consensus 360 ~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k~ 439 (442)
.|++.+.|++.+||+.+++++|.++ .+.|+|+.... +...|...+.|+..||++.+.+.+. +|+|.|+++|+
T Consensus 3 Q~~~~v~i~v~~~~~~~~~~~v~~~-~~~l~i~~~~~------~~~~~~~~~~L~~~I~~~~s~~~~~-~~~l~i~L~K~ 74 (84)
T cd06463 3 QTLDEVTITIPLKDVTKKDVKVEFT-PKSLTVSVKGG------GGKEYLLEGELFGPIDPEESKWTVE-DRKIEITLKKK 74 (84)
T ss_pred ccccEEEEEEEcCCCCccceEEEEe-cCEEEEEeeCC------CCCceEEeeEccCccchhhcEEEEe-CCEEEEEEEEC
Confidence 5789999999999999999999999 78999988732 2357899999999999999999999 99999999998
Q ss_pred CC
Q 013477 440 GS 441 (442)
Q Consensus 440 ~~ 441 (442)
..
T Consensus 75 ~~ 76 (84)
T cd06463 75 EP 76 (84)
T ss_pred CC
Confidence 64
No 29
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.01 E-value=2.6e-05 Score=73.69 Aligned_cols=73 Identities=33% Similarity=0.432 Sum_probs=60.5
Q ss_pred ceeeecCC-eEEEEEecCCCCccc-eEEeec-CCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEE
Q 013477 356 INVREAKD-CYEVYALVPGLLREE-VRVQSD-PAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRL 432 (442)
Q Consensus 356 iNv~~T~d-~~EVyA~~PGl~~~~-v~V~~~-~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L 432 (442)
++|..++| -+-|.|.+||+..++ |+|.|+ ..+.|+|... ..|.+.|.||.. +++.++|+|+ ||+|
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~----------~~~~krv~L~~~-~~e~~~~t~n-NgIL 161 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG----------EKYLKRVALPWP-DPEITSATFN-NGIL 161 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC----------CceEeeEecCCC-ccceeeEEEe-CceE
Confidence 67888888 488999999998777 888886 3677888433 237789999966 8999999999 9999
Q ss_pred EEEeeccC
Q 013477 433 YVRVPFEG 440 (442)
Q Consensus 433 ~I~i~k~~ 440 (442)
.|+|-+..
T Consensus 162 EIri~~~~ 169 (177)
T PF05455_consen 162 EIRIRRTE 169 (177)
T ss_pred EEEEeecC
Confidence 99998763
No 30
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.74 E-value=0.00016 Score=57.68 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=65.0
Q ss_pred eecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEeec
Q 013477 359 REAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPF 438 (442)
Q Consensus 359 ~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k 438 (442)
..|++.+-|++++||+.++++.|.+. ...|.|...-. +...|...+.|...|||+..++.++ +|.|.|++.|
T Consensus 3 ~Qt~~~v~i~v~~~~~~~~~v~v~~~-~~~l~i~~~~~------~~~~~~~~~~L~~~I~~~~s~~~~~-~~~vei~L~K 74 (84)
T cd06466 3 YQTDTSVTVTIYAKNVDKEDVKVEFN-EQSLSVSIILP------GGSEYQLELDLFGPIDPEQSKVSVL-PTKVEITLKK 74 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEe-cCEEEEEEECC------CCCeEEEecccccccCchhcEEEEe-CeEEEEEEEc
Confidence 46788999999999999999999999 67899976511 2346999999999999999999999 9999999999
Q ss_pred cCC
Q 013477 439 EGS 441 (442)
Q Consensus 439 ~~~ 441 (442)
...
T Consensus 75 ~~~ 77 (84)
T cd06466 75 AEP 77 (84)
T ss_pred CCC
Confidence 863
No 31
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=96.81 E-value=0.014 Score=45.18 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=61.9
Q ss_pred ccceeeecCCeEEEEEecCCCC--ccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcE
Q 013477 354 VKINVREAKDCYEVYALVPGLL--REEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGR 431 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~--~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~ 431 (442)
|++.=..|++.+.|+..+++.. +++++|.+. ...|.|+..-. .+ ..|.-.+.|...|||+.....+. ++.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~-~~~l~v~~~~~-----~~-~~~~~~~~L~~~I~~~~s~~~~~-~~~ 72 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFT-DTSLSVSIKSG-----DG-KEYLLEGELFGEIDPDESTWKVK-DNK 72 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEE-TTEEEEEEEET-----TS-CEEEEEEEBSS-BECCCEEEEEE-TTE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEE-eeEEEEEEEcc-----CC-ceEEEEEEEeeeEcchhcEEEEE-CCE
Confidence 4556678999999999997765 999999999 78888873311 01 67888899999999999999999 999
Q ss_pred EEEEeec
Q 013477 432 LYVRVPF 438 (442)
Q Consensus 432 L~I~i~k 438 (442)
|.|.+.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999876
No 32
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.31 E-value=0.027 Score=47.94 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=64.6
Q ss_pred cceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEE
Q 013477 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYV 434 (442)
Q Consensus 355 ~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I 434 (442)
++.=+.|.+.+.|+.++||. +++.|++. ...|+|++.... +...|.-.+.|...|||+..+.++. .+.|.|
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~-~~~l~v~~~~~~-----~~~~y~~~~~L~~~I~pe~s~~~v~-~~kveI 72 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLE-PTSLSFKAKGGG-----GGKKYEFDLEFYKEIDPEESKYKVT-GRQIEF 72 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEE-CCEEEEEEEcCC-----CCeeEEEEeEhhhhccccccEEEec-CCeEEE
Confidence 45558899999999999998 88999999 888999875211 2234778889999999999999999 999999
Q ss_pred EeeccC
Q 013477 435 RVPFEG 440 (442)
Q Consensus 435 ~i~k~~ 440 (442)
++.|++
T Consensus 73 ~L~K~~ 78 (108)
T cd06465 73 VLRKKE 78 (108)
T ss_pred EEEECC
Confidence 999986
No 33
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=95.28 E-value=0.13 Score=41.68 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=62.3
Q ss_pred eecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEeec
Q 013477 359 REAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRVPF 438 (442)
Q Consensus 359 ~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k 438 (442)
..|++.+-|+.+++|+.++++.|.+. ...|++++.-. ....|.-.+.|-..|+|+..+.+++ .+.+.|++.|
T Consensus 3 ~Q~~~~V~iti~~k~~~~~~~~v~~~-~~~l~~~~~~~------~~~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 74 (84)
T cd06489 3 YQTESQVVITILIKNVKPEDVSVEFE-KRELSATVKLP------SGNDYSLKLHLLHPIVPEQSSYKIL-STKIEIKLKK 74 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEe-CCEEEEEEECC------CCCcEEEeeecCceecchhcEEEEe-CcEEEEEEEc
Confidence 35778889999999999999999999 67898876521 1124777889999999999999999 9999999999
Q ss_pred cCC
Q 013477 439 EGS 441 (442)
Q Consensus 439 ~~~ 441 (442)
.+.
T Consensus 75 ~~~ 77 (84)
T cd06489 75 TEA 77 (84)
T ss_pred CCC
Confidence 753
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=95.18 E-value=0.18 Score=41.32 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=55.9
Q ss_pred eecCCeEEEEEecC-CCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCc-EEEEEe
Q 013477 359 REAKDCYEVYALVP-GLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHG-RLYVRV 436 (442)
Q Consensus 359 ~~T~d~~EVyA~~P-Gl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G-~L~I~i 436 (442)
..|.+.++|+.++| |+.+++++|++. ...|+++.... .+| -.-.|...||++..+=.+. +| .|.|++
T Consensus 4 ~Qt~~~V~v~i~~p~~~~~~dv~v~~~-~~~l~v~~~~~--------~~~-~~g~L~~~I~~d~Stw~i~-~~~~l~i~L 72 (85)
T cd06493 4 QQTEEDLTLTIRLPEDTTKEDIRIKFL-PDHISIALKDQ--------APL-LEGKLYSSIDHESSTWIIK-ENKSLEVSL 72 (85)
T ss_pred EEeCCEEEEEEECCCCCChhhEEEEEe-cCEEEEEeCCC--------CeE-EeCcccCcccccCcEEEEe-CCCEEEEEE
Confidence 46889999999995 999999999999 67777754211 122 2337999999999888777 77 699999
Q ss_pred eccCC
Q 013477 437 PFEGS 441 (442)
Q Consensus 437 ~k~~~ 441 (442)
.|++.
T Consensus 73 ~K~~~ 77 (85)
T cd06493 73 IKKDE 77 (85)
T ss_pred EECCC
Confidence 99863
No 35
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=94.86 E-value=0.23 Score=40.71 Aligned_cols=75 Identities=15% Similarity=0.269 Sum_probs=60.6
Q ss_pred eeecCCeEEEEEecCCCCc---cceEEeecCCceEEEecccCCCCCCCCCCcceEeee-CCCCCCCCCceeEEeeCcEEE
Q 013477 358 VREAKDCYEVYALVPGLLR---EEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVI-LPSRIDPLQTSAVVSLHGRLY 433 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl~~---~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~-LP~~vDp~~v~A~~~~~G~L~ 433 (442)
=..|.+.+.|+.++|+..+ +++.|++. ...|.|++.- . ....|.=.+. |-..|+|+..+..+. ...+.
T Consensus 6 W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~-~~~l~v~~~~--~----~~~~~~~~~~~L~~~I~~e~s~~~~~-~~ki~ 77 (92)
T cd06468 6 WDQSDKFVKIYITLKGVHQLPKENIQVEFT-ERSFELKVHD--L----NGKNYRFTINRLLKKIDPEKSSFKVK-TDRIV 77 (92)
T ss_pred eecCCCEEEEEEEccCCCcCCcccEEEEec-CCEEEEEEEC--C----CCcEEEEEehHhhCccCccccEEEEe-CCEEE
Confidence 3568899999999999987 99999999 7788887631 0 1123544554 999999999999998 99999
Q ss_pred EEeeccC
Q 013477 434 VRVPFEG 440 (442)
Q Consensus 434 I~i~k~~ 440 (442)
|++.|++
T Consensus 78 i~L~K~~ 84 (92)
T cd06468 78 ITLAKKK 84 (92)
T ss_pred EEEEeCC
Confidence 9999985
No 36
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=94.55 E-value=0.27 Score=39.40 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=56.5
Q ss_pred eecCCeEEEEEecC-CCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeC-cEEEEEe
Q 013477 359 REAKDCYEVYALVP-GLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLH-GRLYVRV 436 (442)
Q Consensus 359 ~~T~d~~EVyA~~P-Gl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~-G~L~I~i 436 (442)
..|.+.+.|+..+| ++.+++++|.+. ...|.|+... +. .-=.-.|...||++...-.+. + ..|.|++
T Consensus 4 ~Qt~~~V~i~i~~~~~~~~~dv~v~~~-~~~l~v~~~~----~~-----~~l~~~L~~~I~~~~s~w~~~-~~~~v~i~L 72 (85)
T cd06467 4 TQTLDEVTVTIPLPEGTKSKDVKVEIT-PKHLKVGVKG----GE-----PLLDGELYAKVKVDESTWTLE-DGKLLEITL 72 (85)
T ss_pred EeeCCEEEEEEECCCCCcceeEEEEEE-cCEEEEEECC----CC-----ceEcCcccCceeEcCCEEEEe-CCCEEEEEE
Confidence 35778899999886 899999999999 6778887641 11 111126999999999999999 8 9999999
Q ss_pred eccCC
Q 013477 437 PFEGS 441 (442)
Q Consensus 437 ~k~~~ 441 (442)
.|+..
T Consensus 73 ~K~~~ 77 (85)
T cd06467 73 EKRNE 77 (85)
T ss_pred EECCC
Confidence 99864
No 37
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.18 E-value=0.7 Score=39.36 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=62.6
Q ss_pred CCCcccceeeecCCeEEEEE-ecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEee--eCCCCCCCCCceeEE
Q 013477 350 PADWVKINVREAKDCYEVYA-LVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVV--ILPSRIDPLQTSAVV 426 (442)
Q Consensus 350 ~ad~p~iNv~~T~d~~EVyA-~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv--~LP~~vDp~~v~A~~ 426 (442)
|++++++.=..|.+.++|+. +-+|+..++|+|++. ...|+|.=. +. -.+ .|...|+++...=.+
T Consensus 2 ~~~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~-~~~l~V~~~--------g~----~~l~G~L~~~I~~destWtl 68 (93)
T cd06494 2 PCKTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLG-SRDISLAVK--------GQ----EVLKGKLFDSVVADECTWTL 68 (93)
T ss_pred CccCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEE-cCEEEEEEC--------CE----EEEcCcccCccCcccCEEEE
Confidence 78888899999999999999 667999999999999 777777421 10 123 699999999988888
Q ss_pred eeCcE-EEEEeeccC
Q 013477 427 SLHGR-LYVRVPFEG 440 (442)
Q Consensus 427 ~~~G~-L~I~i~k~~ 440 (442)
. +|- |.|++.|..
T Consensus 69 e-d~k~l~I~L~K~~ 82 (93)
T cd06494 69 E-DRKLIRIVLTKSN 82 (93)
T ss_pred E-CCcEEEEEEEeCC
Confidence 8 775 899999974
No 38
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=92.47 E-value=0.62 Score=46.15 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=57.1
Q ss_pred eeecCCeEEEEEecCCC-CccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEe-eCcEEEEE
Q 013477 358 VREAKDCYEVYALVPGL-LREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVS-LHGRLYVR 435 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl-~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~-~~G~L~I~ 435 (442)
....++.+.|...+||+ +.++|+|.+. ...|.|..... .++=.+.||-.||.+.++|..- -.++|.|+
T Consensus 256 ~~~~p~~lvv~i~LP~~~s~~~i~LdV~-~~~l~l~~~~~---------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vt 325 (328)
T PF08190_consen 256 SSGSPEELVVEIELPGVESASDIDLDVS-EDRLSLSSPKP---------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVT 325 (328)
T ss_pred cCCCCceEEEEEECCCcCccceeEEEEe-CCEEEEEeCCC---------ceEEEccCCCcccCCCceEEEccCCCEEEEE
Confidence 34567889999999999 9999999999 66666644411 5667799999999999999975 24999999
Q ss_pred ee
Q 013477 436 VP 437 (442)
Q Consensus 436 i~ 437 (442)
+|
T Consensus 326 lp 327 (328)
T PF08190_consen 326 LP 327 (328)
T ss_pred EE
Confidence 98
No 39
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=91.37 E-value=1.7 Score=35.88 Aligned_cols=77 Identities=13% Similarity=0.004 Sum_probs=61.4
Q ss_pred eeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEEe
Q 013477 357 NVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVRV 436 (442)
Q Consensus 357 Nv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i 436 (442)
+=+.|++.+=|+.++.|++++.+.|.++ ...|+|+-.= .+ ...|.-.+.|-..|||+..+-.+. ..-+.|++
T Consensus 4 dW~Qs~~~V~ItI~~k~~~~~~~~v~~~-~~~l~v~~~~--~~----~~~y~~~l~L~~~I~~~~s~~~v~-~~kvei~L 75 (87)
T cd06488 4 DWHQTGSHVVVSVYAKNSNPELSVVEAN-STVLTIHIVF--EG----NKEFQLDIELWGVIDVEKSSVNML-PTKVEIKL 75 (87)
T ss_pred cEeeCCCEEEEEEEECcCCccceEEEec-CCEEEEEEEC--CC----CceEEEEeeccceEChhHcEEEec-CcEEEEEE
Confidence 3456788888888999999999999999 5667664320 01 234888889999999999998888 99999999
Q ss_pred eccCC
Q 013477 437 PFEGS 441 (442)
Q Consensus 437 ~k~~~ 441 (442)
.|+++
T Consensus 76 ~K~~~ 80 (87)
T cd06488 76 RKAEP 80 (87)
T ss_pred EeCCC
Confidence 99864
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=78.32 E-value=10 Score=38.83 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=63.9
Q ss_pred ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEE
Q 013477 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (442)
++.+=+.|.+.|-|+.|+.|+.++.+.|.+. ...|.|+-.- . +...|.-.+.|=..|||++.+-++. ---+.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~-~~~l~v~~~~--~----~~~~y~~~~~L~~~I~p~~s~~~v~-~~Kie 228 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFG-EQILSVVIEV--P----GEDAYHLQPRLFGKIIPDKCKYEVL-STKIE 228 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEee-cCEEEEEEec--C----CCcceeecccccccccccccEEEEe-cceEE
Confidence 5566788999999999999999999999999 5677775421 1 1134777789999999999999998 66888
Q ss_pred EEeeccC
Q 013477 434 VRVPFEG 440 (442)
Q Consensus 434 I~i~k~~ 440 (442)
|++.|.+
T Consensus 229 i~l~K~~ 235 (356)
T PLN03088 229 IRLAKAE 235 (356)
T ss_pred EEEecCC
Confidence 9998875
No 41
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=76.22 E-value=4.1 Score=29.91 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=28.4
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
+|..+|..+|.- .|..|+..|+. +-.+..++.+|.+||
T Consensus 11 ~l~~~v~~~g~~-------~W~~Ia~~~~~----~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 11 KLLEAVKKYGKD-------NWKKIAKRMPG----GRTAKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHHSTTT-------HHHHHHHHHSS----SSTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCc-------HHHHHHHHcCC----CCCHHHHHHHHHhhC
Confidence 566677776644 89999999982 223678999999886
No 42
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=75.55 E-value=27 Score=30.43 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=56.6
Q ss_pred cceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEE
Q 013477 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYV 434 (442)
Q Consensus 355 ~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I 434 (442)
.+.=+.+.+.+=|...+|+ .+++.|+++ ...|+++|.-. .+. .+.=.+.|=..|+|+..+-+++ .=.+.|
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~-~~~l~f~~~~~-----~g~-~y~~~l~l~~~I~pe~Sk~~v~-~r~ve~ 72 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFE-KSKLTFSCLNG-----DNV-KIYNEIELYDRVDPNDSKHKRT-DRSILC 72 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEe-cCEEEEEEECC-----CCc-EEEEEEEeecccCcccCeEEeC-CceEEE
Confidence 3444566776666668887 789999999 66899988421 122 2555678999999999888887 778999
Q ss_pred EeeccC
Q 013477 435 RVPFEG 440 (442)
Q Consensus 435 ~i~k~~ 440 (442)
.|.|.+
T Consensus 73 ~L~K~~ 78 (106)
T cd00237 73 CLRKGK 78 (106)
T ss_pred EEEeCC
Confidence 999875
No 43
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=74.80 E-value=24 Score=29.49 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=50.1
Q ss_pred ecCCeEEEEEecC-C--CCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCc-EEEEE
Q 013477 360 EAKDCYEVYALVP-G--LLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHG-RLYVR 435 (442)
Q Consensus 360 ~T~d~~EVyA~~P-G--l~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G-~L~I~ 435 (442)
.|.+.++|+.-+| | +.+++|.|++. ...|.+.=. +..+|= .-.|...||++-..=.+. +| +|.|.
T Consensus 5 QT~~ev~v~v~l~~~~~~~~kdv~v~i~-~~~l~v~~~--------g~~~~i-~G~L~~~V~~des~Wtle-d~~~l~i~ 73 (87)
T cd06492 5 QTLSEVELKVPFKVSFRLKGKDVVVDIQ-RKHLKVGLK--------GQPPII-DGELYNEVKVEESSWLIE-DGKVVTVN 73 (87)
T ss_pred eecCEEEEEEECCCCCCccceEEEEEEe-cCEEEEEEC--------CCceEE-eCcccCcccccccEEEEe-CCCEEEEE
Confidence 3566788888775 3 89999999999 667777332 111221 126899999998877777 76 89999
Q ss_pred eeccC
Q 013477 436 VPFEG 440 (442)
Q Consensus 436 i~k~~ 440 (442)
+.|..
T Consensus 74 L~K~~ 78 (87)
T cd06492 74 LEKIN 78 (87)
T ss_pred EEECC
Confidence 99874
No 44
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=59.04 E-value=70 Score=27.84 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=54.6
Q ss_pred cccceeeecCCeEEEEEecC-CC-CccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCc
Q 013477 353 WVKINVREAKDCYEVYALVP-GL-LREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHG 430 (442)
Q Consensus 353 ~p~iNv~~T~d~~EVyA~~P-Gl-~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G 430 (442)
+.++-=..|-+-++||.-+| |. ...+|.|++. ...|.|.=.....+ .+|= .=.|...|+++-..=.+. +|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~-~~~l~v~~~~~~~~-----~~~i-~G~L~~~V~~des~Wtle-d~ 75 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQ-SSSIRVSVRDGGGE-----KVLM-EGEFTHKINTENSLWSLE-PG 75 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEE-cCEEEEEEecCCCC-----ceEE-eCcccCcccCccceEEEe-CC
Confidence 44455567888999999999 54 5899999999 77777633200000 0110 015899999998877777 76
Q ss_pred E-EEEEeeccC
Q 013477 431 R-LYVRVPFEG 440 (442)
Q Consensus 431 ~-L~I~i~k~~ 440 (442)
. |.|.+.|..
T Consensus 76 ~~l~I~L~K~~ 86 (102)
T cd06495 76 KCVLLSLSKCS 86 (102)
T ss_pred CEEEEEEEECC
Confidence 6 799998863
No 45
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=51.42 E-value=1.2e+02 Score=25.11 Aligned_cols=74 Identities=8% Similarity=-0.008 Sum_probs=48.9
Q ss_pred eecCCeEEEEEecCC--CCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEee-CcEEEEE
Q 013477 359 REAKDCYEVYALVPG--LLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSL-HGRLYVR 435 (442)
Q Consensus 359 ~~T~d~~EVyA~~PG--l~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~-~G~L~I~ 435 (442)
+.|++.+-|..++.+ +....+.|... ...|+|+=- . . ...|.-.+.|=..||++. +.++.. -|-+.|+
T Consensus 4 yQt~~~Vtitiy~K~~~~~~~~v~v~~~-~~~l~v~~~--~-~----~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~ 74 (87)
T cd06490 4 FQTDSEVTIVVYTKSKGNPADIVIVDDQ-QRELRVEII--L-G----DKSYLLHLDLSNEVQWPC-EVRISTETGKIELV 74 (87)
T ss_pred eECCCEEEEEEEEcccCCCCccEEEECC-CCEEEEEEE--C-C----CceEEEeeeccccCCCCc-EEEEcccCceEEEE
Confidence 567888888888885 55555556556 457877421 0 0 123777778989999885 444442 4678999
Q ss_pred eeccCC
Q 013477 436 VPFEGS 441 (442)
Q Consensus 436 i~k~~~ 441 (442)
+.|+++
T Consensus 75 L~K~e~ 80 (87)
T cd06490 75 LKKKEP 80 (87)
T ss_pred EEcCCC
Confidence 998864
No 46
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=49.67 E-value=27 Score=23.70 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=24.3
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHh
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKA 229 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKy 229 (442)
.|...|..+|- ..|..|+..|+. . .+..++.+|.++
T Consensus 9 ~l~~~~~~~g~-------~~w~~Ia~~~~~-r----s~~~~~~~~~~~ 44 (45)
T cd00167 9 LLLEAVKKYGK-------NNWEKIAKELPG-R----TPKQCRERWRNL 44 (45)
T ss_pred HHHHHHHHHCc-------CCHHHHHhHcCC-C----CHHHHHHHHHHh
Confidence 35555555552 579999999964 1 256788888765
No 47
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=49.29 E-value=19 Score=34.51 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCC
Q 013477 169 KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPK 213 (442)
Q Consensus 169 k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~ 213 (442)
.+|+-+||..+.|.||.+|.++-.- .-|.|-++|-.||..+
T Consensus 44 ~pPkS~Gk~Fs~~~Lf~LI~k~~~k----eikTW~~La~~LGVep 84 (175)
T PF09441_consen 44 SPPKSDGKSFSTFTLFELIRKLESK----EIKTWAQLALELGVEP 84 (175)
T ss_pred CCCCcCCccchHHHHHHHHHHHhhh----hHhHHHHHHHHhCCCC
Confidence 5899999999999999999976432 3478999999999843
No 48
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=47.61 E-value=28 Score=26.28 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=23.6
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
+|-..|...|. .|..||..|+ .. ...+++..|.++|
T Consensus 8 ~L~~~~~~~g~--------~W~~Ia~~l~-~R----t~~~~~~r~~~~l 43 (60)
T PF13921_consen 8 LLLELVKKYGN--------DWKKIAEHLG-NR----TPKQCRNRWRNHL 43 (60)
T ss_dssp HHHHHHHHHTS---------HHHHHHHST-TS-----HHHHHHHHHHTT
T ss_pred HHHHHHHHHCc--------CHHHHHHHHC-cC----CHHHHHHHHHHHC
Confidence 45556666553 5999999996 12 2467888887755
No 49
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=47.31 E-value=63 Score=31.64 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=57.8
Q ss_pred ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEE
Q 013477 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (442)
++++-+.|+..+-|..|++++-.+++.|.+. +..|.|.=+ -+ +-..|.-.-.|=..|.|++.+-.+. ---+.
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s-~~~l~~~~~--~~----~g~~~~l~~~L~~~I~pe~~s~k~~-stKVE 75 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEIS-ENTLSIVIQ--LP----SGSEYNLQLKLYHEIIPEKSSFKVF-STKVE 75 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEee-cceEEEEEe--cC----CchhhhhhHHhcccccccceeeEee-eeeEE
Confidence 4567789999999999999999999999999 777766433 11 1123333444777888888776666 66777
Q ss_pred EEeeccC
Q 013477 434 VRVPFEG 440 (442)
Q Consensus 434 I~i~k~~ 440 (442)
|++.|.+
T Consensus 76 I~L~K~~ 82 (196)
T KOG1309|consen 76 ITLAKAE 82 (196)
T ss_pred EEecccc
Confidence 8888753
No 50
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=46.78 E-value=4.5 Score=44.32 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=79.7
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcC-CCCCCCcHHHH
Q 013477 144 EGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFH-PPKTCTTVSWT 221 (442)
Q Consensus 144 ~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~Lg-lP~t~TSas~~ 221 (442)
...+.....|+..|..|++-.+.++ ..+..+...+.+++....+..-||+...-....|..|+.-++ ++..+..+...
T Consensus 304 ~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~~~~~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (512)
T KOG2744|consen 304 EAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPDLNLFKVFRLECHQGGDSNIPSALQWKQVAKDLGLLPNLNSAASSN 383 (512)
T ss_pred ccchhhhccccccCceeccCcchhccCccccccCcccccccccceeeccCcCcCCchhheeccccccccccccccccccc
Confidence 4556678899999999999999988 678888999999999999999999999999999999999998 45444455667
Q ss_pred HHHHHHHhHHHHHHhh
Q 013477 222 FRIFYEKALLEYEKHK 237 (442)
Q Consensus 222 LR~~YeKyLlpYE~~~ 237 (442)
.+-.|.++|+.++..-
T Consensus 384 ~~~~~k~~l~~~~~~~ 399 (512)
T KOG2744|consen 384 TKLAYKKSLSENEEYC 399 (512)
T ss_pred cccccchhhccccccc
Confidence 8888899999877763
No 51
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=33.71 E-value=54 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=27.1
Q ss_pred EEecCCCCccceEEeecCCceEEEecccCCC
Q 013477 368 YALVPGLLREEVRVQSDPAGRLVITGEPEQV 398 (442)
Q Consensus 368 yA~~PGl~~~~v~V~~~~~g~L~IsGer~~~ 398 (442)
|.|=.|++|..|.=+|.++|+|||.+-+...
T Consensus 121 y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 121 YLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred ecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 6677899999999999999999998875554
No 52
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=31.92 E-value=81 Score=21.50 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=18.8
Q ss_pred cchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 200 KLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 200 KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
+.|..|+..|+- -.+..++..|..++
T Consensus 22 ~~w~~Ia~~~~~-----rt~~~~~~~~~~~~ 47 (49)
T smart00717 22 NNWEKIAKELPG-----RTAEQCRERWNNLL 47 (49)
T ss_pred CCHHHHHHHcCC-----CCHHHHHHHHHHHc
Confidence 579999999961 12467788887654
No 53
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=27.40 E-value=46 Score=25.92 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=23.8
Q ss_pred ccCcchhHhhhhcC--CCC-CCCcHHHHHHHHHHHhHHHHH
Q 013477 197 TASKLWRQVGESFH--PPK-TCTTVSWTFRIFYEKALLEYE 234 (442)
Q Consensus 197 t~~KkWreVa~~Lg--lP~-t~TSas~~LR~~YeKyLlpYE 234 (442)
.....|.+|+..|+ ++. .|...-..||..|.+.+....
T Consensus 24 ~r~~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~~~~~ 64 (85)
T PF10545_consen 24 LREEAWQEIARELGKEFSVDDCKKRWKNLRDRYRRELKKIK 64 (85)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999998 431 133334456666666665555
No 54
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=25.66 E-value=86 Score=25.37 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=29.9
Q ss_pred hHHHHHHhcCcc-cccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 013477 182 KLWRAVVRLGGY-EVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEK 235 (442)
Q Consensus 182 kLYk~V~~rGGy-dkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~ 235 (442)
.|+.-|...... ..++.++.|.++++.- |..- .-.++|..|.|.|.....
T Consensus 12 ~l~~~v~~~~~~~~~~~Gn~iwk~le~~~--~t~H--twQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 12 ALLDYVKENERQGGSVSGNKIWKELEEKH--PTRH--TWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp HHHHHHHHT--STTTTTSSHHHHHHHHS---SSS----SHHHHHHHHHHT-----
T ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcccc
Confidence 466777544322 4688899999999875 2122 246899999999987653
No 55
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=23.52 E-value=1.1e+02 Score=25.09 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.5
Q ss_pred eEEEEEecCCCCccceEEeecCCceEEEe
Q 013477 364 CYEVYALVPGLLREEVRVQSDPAGRLVIT 392 (442)
Q Consensus 364 ~~EVyA~~PGl~~~~v~V~~~~~g~L~Is 392 (442)
.|+-...+|.++++.+.-++. +|.|+|+
T Consensus 63 ~f~r~~~lp~v~~~~i~A~~~-dGvL~I~ 90 (93)
T cd06471 63 SFSRSFYLPNVDEEEIKAKYE-NGVLKIT 90 (93)
T ss_pred EEEEEEECCCCCHHHCEEEEE-CCEEEEE
Confidence 455445679999999999999 9999995
No 56
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=22.74 E-value=86 Score=23.71 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=20.1
Q ss_pred CCCCccceEEeecCCceEEEecccCCC
Q 013477 372 PGLLREEVRVQSDPAGRLVITGEPEQV 398 (442)
Q Consensus 372 PGl~~~~v~V~~~~~g~L~IsGer~~~ 398 (442)
+.+....|+|.+. +|.++|+|.=...
T Consensus 12 ~~~~~~~i~v~v~-~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVE-NGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEE-CTEEEEEEEESSC
T ss_pred cccCCCeEEEEEE-CCEEEEEeeCcHH
Confidence 3667778999999 9999999985443
No 57
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=22.60 E-value=68 Score=25.45 Aligned_cols=54 Identities=6% Similarity=0.080 Sum_probs=33.2
Q ss_pred echhhHHHHHHhcCcc---cccccCcchhHhhhhcCC-CCCCCcHHHHHHHHHHHhHHH
Q 013477 178 LNCLKLWRAVVRLGGY---EVVTASKLWRQVGESFHP-PKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 178 LDLykLYk~V~~rGGy---dkVt~~KkWreVa~~Lgl-P~t~TSas~~LR~~YeKyLlp 232 (442)
|+|+.-|..|..--.. ........|.+|+..|+- +.. .-.+..+|..|..+...
T Consensus 14 v~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~-~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 14 VELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPG-KRSWKQLKKKWKNLKSK 71 (78)
T ss_pred HHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHH
Confidence 4455555555544222 233345679999999963 332 34467899999887654
No 58
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=22.53 E-value=93 Score=26.62 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEEEecCCCCccceEEeecCCceEEEec
Q 013477 366 EVYALVPGLLREEVRVQSDPAGRLVITG 393 (442)
Q Consensus 366 EVyA~~PGl~~~~v~V~~~~~g~L~IsG 393 (442)
--|.|..++++++|.=++..+|+|+|..
T Consensus 62 R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 62 KKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 3467778999999999999999999953
No 59
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=22.36 E-value=4.9e+02 Score=22.81 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=47.9
Q ss_pred ceeeecCC-eEEEEEecCCCCccceEEeecCCceEEEecccCCC--CCCCC----CCcceEeeeCCCCCCCCCceeEEee
Q 013477 356 INVREAKD-CYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV--DNPWG----ITPFKKVVILPSRIDPLQTSAVVSL 428 (442)
Q Consensus 356 iNv~~T~d-~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~--~~~~~----~~~FrRvv~LP~~vDp~~v~A~~~~ 428 (442)
|.|...++ .++|.. ..+.++++.+ .+.|+|+...+.. ...|. ...-+=.|+||.+..-++++....
T Consensus 68 V~I~~~~~~~i~v~~-----~~k~~~~~~~-~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~- 140 (166)
T PF13349_consen 68 VEIKPSDDDKIKVEY-----NGKKPEISVE-GGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTS- 140 (166)
T ss_pred EEEEEcCCccEEEEE-----cCcEEEEEEc-CCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEec-
Confidence 66666555 344443 2226899999 9999998872211 11110 234556799999987778888888
Q ss_pred CcEEEEE
Q 013477 429 HGRLYVR 435 (442)
Q Consensus 429 ~G~L~I~ 435 (442)
.|-++|.
T Consensus 141 ~G~i~i~ 147 (166)
T PF13349_consen 141 SGDITIE 147 (166)
T ss_pred cccEEEE
Confidence 8888774
No 60
>PLN03212 Transcription repressor MYB5; Provisional
Probab=21.97 E-value=90 Score=31.69 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=28.7
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEY 233 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpY 233 (442)
+|...|.++|. ..|..|+..++.-.+ +.+.|.-|.+||.|-
T Consensus 35 ~L~~lV~kyG~-------~nW~~IAk~~g~gRT----~KQCReRW~N~L~P~ 75 (249)
T PLN03212 35 ILVSFIKKEGE-------GRWRSLPKRAGLLRC----GKSCRLRWMNYLRPS 75 (249)
T ss_pred HHHHHHHHhCc-------ccHHHHHHhhhcCCC----cchHHHHHHHhhchh
Confidence 34556777763 369999998874332 457788899999764
No 61
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=21.58 E-value=1.5e+02 Score=23.36 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=18.1
Q ss_pred hHhhhhcCCCC-CCCcHHHHHHHHHHHhHH
Q 013477 203 RQVGESFHPPK-TCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 203 reVa~~LglP~-t~TSas~~LR~~YeKyLl 231 (442)
+.|++.|+.+. + ...++.|+.||-+
T Consensus 30 k~I~~~~~~~~lT----~~qV~SH~QKy~~ 55 (57)
T TIGR01557 30 KRILELMVVDGLT----RDQVASHLQKYRL 55 (57)
T ss_pred HHHHHHcCCCCCC----HHHHHHHHHHHHc
Confidence 78888888654 3 4578888888764
No 62
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=20.31 E-value=45 Score=30.45 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCC---CCcHHHHHHHHH
Q 013477 152 EFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKT---CTTVSWTFRIFY 226 (442)
Q Consensus 152 ~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t---~TSas~~LR~~Y 226 (442)
.+++.-+.+++.+ |+++.++.|+..|++..|+..-....+=.+++..|.+... +..--|.||.-|
T Consensus 4 S~idvAy~iL~~~----------~~~m~f~dL~~ev~~~~~~s~e~~~~~iaq~YtdLn~DGRFi~lG~n~WgLr~w~ 71 (129)
T PRK02363 4 SLIEVAYEILKEK----------KEPMSFYDLVNEIQKYLGKSDEEIRERIAQFYTDLNLDGRFISLGDNKWGLRSWY 71 (129)
T ss_pred cHHHHHHHHHHHc----------CCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCCeeEcCCCceeccccc
Confidence 4566666777765 5667889999999999998765556677888888887642 445567888754
No 63
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=20.21 E-value=46 Score=32.09 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCC---CCcHHHHHHHH
Q 013477 149 EQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKT---CTTVSWTFRIF 225 (442)
Q Consensus 149 Ere~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t---~TSas~~LR~~ 225 (442)
....|+..=+.-++.++. ++.+.-|++.|++++|+..+--..+-...+..|++... -...-|.||..
T Consensus 12 ~els~IevA~~ile~~~~----------~~~F~dii~EI~~~~~~s~~ei~~~i~~FYTdln~DgrFi~LGdn~WgLRsw 81 (175)
T COG3343 12 SELSLIEVAHAILEEKKK----------PFNFSDIINEIQKLLGVSKEEIRSRIGQFYTDLNIDGRFISLGDNKWGLRSW 81 (175)
T ss_pred HHHHHHHHHHHHHHHcCC----------CccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhccCCceeeccccccchhhc
Confidence 344555555566665554 56788999999999999999888899999999988643 22345888887
Q ss_pred H
Q 013477 226 Y 226 (442)
Q Consensus 226 Y 226 (442)
|
T Consensus 82 y 82 (175)
T COG3343 82 Y 82 (175)
T ss_pred c
Confidence 7
Done!