Query 013477
Match_columns 442
No_of_seqs 213 out of 480
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 11:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 3.4E-29 1.2E-33 212.5 5.6 104 148-251 2-106 (107)
2 2eqy_A RBP2 like, jumonji, at 99.9 2.7E-27 9.2E-32 206.0 12.4 106 143-249 7-112 (122)
3 2lm1_A Lysine-specific demethy 99.9 2.7E-27 9.1E-32 200.4 8.6 96 144-240 10-105 (107)
4 2cxy_A BAF250B subunit, HBAF25 99.9 1.9E-27 6.4E-32 207.4 7.4 109 132-242 3-114 (125)
5 2jxj_A Histone demethylase jar 99.9 2.2E-27 7.6E-32 197.4 7.0 92 146-238 4-95 (96)
6 2kk0_A AT-rich interactive dom 99.9 5.4E-27 1.9E-31 209.6 8.9 108 130-238 14-124 (145)
7 2jrz_A Histone demethylase jar 99.9 5.2E-27 1.8E-31 202.7 8.4 98 144-242 6-103 (117)
8 2rq5_A Protein jumonji; develo 99.9 9.2E-27 3.1E-31 203.4 9.1 90 149-238 12-102 (121)
9 1c20_A DEAD ringer protein; DN 99.9 1.5E-26 5E-31 202.2 9.2 93 147-239 20-113 (128)
10 2li6_A SWI/SNF chromatin-remod 99.9 2.1E-26 7.3E-31 198.4 8.5 100 135-239 3-105 (116)
11 1kkx_A Transcription regulator 99.9 2.4E-25 8.3E-30 194.5 7.9 90 144-238 13-103 (123)
12 3gla_A Low molecular weight he 99.8 5.4E-20 1.8E-24 151.8 10.4 90 351-442 1-100 (100)
13 4fei_A Heat shock protein-rela 99.8 9E-19 3.1E-23 146.1 10.2 89 352-442 4-97 (102)
14 4eld_A MJ16.5-P1, small heat s 99.7 3.4E-17 1.2E-21 146.6 10.8 89 351-441 54-152 (161)
15 3aab_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 140.4 9.8 87 352-441 23-117 (123)
16 3q9p_A Heat shock protein beta 99.7 5.9E-17 2E-21 131.7 8.6 81 358-439 2-84 (85)
17 1gme_A Heat shock protein 16.9 99.7 1.7E-16 5.8E-21 141.5 11.8 88 353-441 43-139 (151)
18 2wj5_A Heat shock protein beta 99.7 8.2E-17 2.8E-21 134.6 8.7 85 355-441 3-90 (101)
19 3l1e_A Alpha-crystallin A chai 99.7 8.1E-17 2.8E-21 135.9 8.0 84 356-441 5-91 (106)
20 2y1y_A Alpha-crystallin B chai 99.6 5.2E-16 1.8E-20 127.0 6.3 80 360-441 3-85 (90)
21 2bol_A TSP36, small heat shock 99.6 1.2E-14 4.1E-19 144.2 11.1 88 353-441 98-190 (314)
22 2klr_A Alpha-crystallin B chai 99.5 5.6E-15 1.9E-19 135.5 6.5 83 356-440 66-151 (175)
23 2bol_A TSP36, small heat shock 99.5 1.1E-14 3.7E-19 144.6 7.4 81 356-438 223-312 (314)
24 2xcm_C SGT1-like protein, cyto 98.4 1.5E-06 5E-11 69.7 9.2 80 354-441 3-82 (92)
25 1rl1_A Suppressor of G2 allele 98.3 1.5E-06 5.3E-11 72.8 8.6 80 354-441 10-89 (114)
26 1x5m_A Calcyclin-binding prote 95.6 0.11 3.7E-06 44.5 10.9 81 352-440 19-103 (127)
27 1wh0_A Ubiquitin carboxyl-term 95.3 0.054 1.9E-06 47.6 8.2 87 353-441 19-112 (134)
28 2k8q_A Protein SHQ1; beta-sand 95.2 0.085 2.9E-06 46.9 8.9 75 354-440 4-82 (134)
29 3igf_A ALL4481 protein; two-do 95.1 0.04 1.4E-06 55.5 7.4 63 364-439 306-369 (374)
30 1wfi_A Nuclear distribution ge 95.0 0.19 6.4E-06 43.1 10.5 82 348-440 2-87 (131)
31 1wgv_A KIAA1068 protein; CS do 94.2 0.29 9.9E-06 41.7 9.7 86 347-440 13-101 (124)
32 3qor_A Nuclear migration prote 93.9 0.57 1.9E-05 39.9 11.0 84 346-440 9-96 (121)
33 2rh0_A NUDC domain-containing 93.8 0.25 8.5E-06 44.2 8.9 79 350-440 10-90 (157)
34 2o30_A Nuclear movement protei 93.3 0.21 7.3E-06 42.9 7.3 74 354-439 5-79 (131)
35 3eud_A Protein SHQ1; CS domain 92.9 0.59 2E-05 40.7 9.4 76 354-441 18-97 (115)
36 2cg9_X CO-chaperone protein SB 90.5 0.3 1E-05 42.5 4.9 74 363-440 23-97 (134)
37 1ejf_A Progesterone receptor P 90.1 0.58 2E-05 39.9 6.4 77 355-440 5-81 (125)
38 2kmw_A Uncharacterized protein 89.9 0.61 2.1E-05 41.4 6.6 78 353-440 4-81 (150)
39 1gvd_A MYB proto-oncogene prot 72.2 2.1 7.1E-05 31.0 2.3 39 182-232 13-51 (52)
40 1guu_A C-MYB, MYB proto-oncoge 71.9 2.9 0.0001 30.1 3.1 39 182-232 13-51 (52)
41 1ity_A TRF1; helix-turn-helix, 71.3 5.2 0.00018 30.6 4.6 41 182-232 20-60 (69)
42 2dim_A Cell division cycle 5-l 64.9 5.5 0.00019 30.5 3.5 39 182-232 19-57 (70)
43 2elk_A SPCC24B10.08C protein; 64.4 6.4 0.00022 29.3 3.7 39 182-231 19-57 (58)
44 1x41_A Transcriptional adaptor 61.4 8.4 0.00029 28.7 3.9 38 182-231 18-55 (60)
45 1w0t_A Telomeric repeat bindin 57.9 14 0.00047 26.7 4.4 39 182-230 12-50 (53)
46 2d9a_A B-MYB, MYB-related prot 57.8 8.8 0.0003 28.4 3.4 38 182-231 18-55 (60)
47 2din_A Cell division cycle 5-l 52.2 19 0.00066 27.0 4.6 41 182-236 19-59 (66)
48 2yum_A ZZZ3 protein, zinc fing 51.7 11 0.00037 29.1 3.2 44 182-232 18-61 (75)
49 2cu7_A KIAA1915 protein; nucle 48.4 25 0.00086 27.0 4.8 41 182-235 19-59 (72)
50 3sjm_A Telomeric repeat-bindin 42.4 35 0.0012 26.0 4.7 40 182-231 21-60 (64)
51 1fex_A TRF2-interacting telome 40.2 27 0.00093 26.4 3.7 45 182-230 12-57 (59)
52 2yus_A SWI/SNF-related matrix- 36.0 20 0.00069 28.5 2.5 35 182-229 28-62 (79)
53 2k9n_A MYB24; R2R3 domain, DNA 35.3 29 0.001 28.4 3.4 38 182-231 11-48 (107)
54 1gv2_A C-MYB, MYB proto-oncoge 34.1 32 0.0011 27.8 3.5 37 182-230 14-50 (105)
55 2k9n_A MYB24; R2R3 domain, DNA 28.2 74 0.0025 25.9 4.8 42 182-236 63-104 (107)
56 1gv2_A C-MYB, MYB proto-oncoge 27.6 58 0.002 26.2 4.0 37 181-230 65-101 (105)
57 2lpy_A Matrix protein P10; GAG 26.3 1.9E+02 0.0065 25.3 7.2 54 149-209 6-62 (124)
58 2cqq_A RSGI RUH-037, DNAJ homo 25.8 68 0.0023 25.1 3.9 52 183-247 19-70 (72)
59 1h8a_C AMV V-MYB, MYB transfor 24.5 60 0.002 27.2 3.6 38 182-231 37-74 (128)
60 2cjj_A Radialis; plant develop 23.8 2E+02 0.0068 23.6 6.5 41 199-246 31-71 (93)
61 2cqr_A RSGI RUH-043, DNAJ homo 23.6 91 0.0031 24.5 4.3 27 199-230 41-67 (73)
62 3zqc_A MYB3; transcription-DNA 22.0 75 0.0026 26.8 3.8 38 182-232 64-101 (131)
63 3hie_A Protein PSL1, exocyst c 20.2 49 0.0017 30.4 2.3 39 144-183 130-168 (171)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=3.4e-29 Score=212.49 Aligned_cols=104 Identities=21% Similarity=0.412 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHH
Q 013477 148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFY 226 (442)
Q Consensus 148 rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~Y 226 (442)
++++.|+++|.+||+++|+++ ++|.|+|++||||+||++|+++|||++||.+++|.+||+.||++.+++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 589999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhhcCCCCCCCCCCC
Q 013477 227 EKALLEYEKHKRLSGELQLPASSFP 251 (442)
Q Consensus 227 eKyLlpYE~~~~~~G~~~~P~~~~~ 251 (442)
++||++||+++.+....+.|+++|+
T Consensus 82 ~k~L~~yE~~~~~~~~~~~p~~~~~ 106 (107)
T 1ig6_A 82 ERLILPYERFIKGEEDKPLPPIKPR 106 (107)
T ss_dssp HHHTTTTHHHHHHHTSSSSCTTCSC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 9999999999988877778877664
No 2
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=2.7e-27 Score=205.98 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=96.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHH
Q 013477 143 DEGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTF 222 (442)
Q Consensus 143 ~~gt~rEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~L 222 (442)
.++..++++.|+++|.+||+.||+++++|+|+|++||||+||++|+++|||++||.+++|++|++.||+|. ++++++.|
T Consensus 7 le~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~-~~~~~~~L 85 (122)
T 2eqy_A 7 GEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAP-GKAVGSHI 85 (122)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCS-SSHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCC-CCcHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999987 56789999
Q ss_pred HHHHHHhHHHHHHhhhhcCCCCCCCCC
Q 013477 223 RIFYEKALLEYEKHKRLSGELQLPASS 249 (442)
Q Consensus 223 R~~YeKyLlpYE~~~~~~G~~~~P~~~ 249 (442)
|++|+|||++||++.++.+....+..+
T Consensus 86 r~~Y~k~L~~yE~~~~~~~~~~~~~~~ 112 (122)
T 2eqy_A 86 RGHYERILNPYNLFLSGDSLRCLQKPN 112 (122)
T ss_dssp HHHHHHTHHHHHHHHHCCTTCCCCCCC
T ss_pred HHHHHHHhHHHHHHHhcCCccccCCCC
Confidence 999999999999998876665554433
No 3
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=2.7e-27 Score=200.37 Aligned_cols=96 Identities=24% Similarity=0.406 Sum_probs=91.4
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHH
Q 013477 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFR 223 (442)
Q Consensus 144 ~gt~rEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR 223 (442)
++..+++..|+++|.+||+.+|+++++|.|+|++||||+||++|+++|||++||.+++|++||+.||+|.+ +++++.||
T Consensus 10 ~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~lk 88 (107)
T 2lm1_A 10 EAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATLK 88 (107)
T ss_dssp CCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999874 78999999
Q ss_pred HHHHHhHHHHHHhhhhc
Q 013477 224 IFYEKALLEYEKHKRLS 240 (442)
Q Consensus 224 ~~YeKyLlpYE~~~~~~ 240 (442)
++|+|||++||++.++.
T Consensus 89 ~~Y~k~L~~yE~~~~~~ 105 (107)
T 2lm1_A 89 AHYERILHPFEVYTSGK 105 (107)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHhcC
Confidence 99999999999998754
No 4
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=1.9e-27 Score=207.35 Aligned_cols=109 Identities=17% Similarity=0.334 Sum_probs=92.8
Q ss_pred CcccccccCC-CC-CCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhh
Q 013477 132 NWLNDIEMGE-AD-EGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGES 208 (442)
Q Consensus 132 ~~~~d~~~~~-~~-~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~ 208 (442)
+++|-+.++. .+ ++.+ +++.|+++|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|++||+.
T Consensus 3 ~~~f~~r~Q~L~el~~~~-~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~ 81 (125)
T 2cxy_A 3 SGSSGEKITKVYELGNEP-ERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATN 81 (125)
T ss_dssp ----CCBTTHHHHSCCCT-THHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHH
T ss_pred CCccccceeeHHhccCch-hHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHH
Confidence 4556666666 22 3444 56679999999999999999 8999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHhHHHHHHhhhhcCC
Q 013477 209 FHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGE 242 (442)
Q Consensus 209 LglP~t~TSas~~LR~~YeKyLlpYE~~~~~~G~ 242 (442)
||+|. ++++++.||++|+|||++||+++....+
T Consensus 82 lg~~~-~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~ 114 (125)
T 2cxy_A 82 LNVGT-SSSAASSLKKQYIQYLFAFECKIERGEE 114 (125)
T ss_dssp TTSCS-SHHHHHHHHHHHHHHTHHHHHHHHHCCC
T ss_pred hCCCC-CCcHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99986 6889999999999999999999764443
No 5
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=197.36 Aligned_cols=92 Identities=23% Similarity=0.386 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHH
Q 013477 146 TPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIF 225 (442)
Q Consensus 146 t~rEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~ 225 (442)
..++++.|+++|.+||+++|+++++|.|+|++||||+||++|+++|||++||++++|.+|++.||+|.++ ++++.||++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999866 688999999
Q ss_pred HHHhHHHHHHhhh
Q 013477 226 YEKALLEYEKHKR 238 (442)
Q Consensus 226 YeKyLlpYE~~~~ 238 (442)
|+|||++||++.+
T Consensus 83 Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 83 YERILYPYELFQS 95 (96)
T ss_dssp HTTTTHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 6
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=209.58 Aligned_cols=108 Identities=27% Similarity=0.512 Sum_probs=100.8
Q ss_pred cCCcccccccCC-C-CCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhh
Q 013477 130 SKNWLNDIEMGE-A-DEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVG 206 (442)
Q Consensus 130 ~~~~~~d~~~~~-~-~~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa 206 (442)
..+|.|.+.++. . .++.++ ++.|+++|.+||+.+|+|+ ++|.|+|++||||+||++|+++|||++||.+++|++||
T Consensus 14 ~~~f~F~~r~q~L~eL~~~~~-~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va 92 (145)
T 2kk0_A 14 HGDWTYEEQFKQLYELDGDPK-RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREIT 92 (145)
T ss_dssp TTSCCCCCCCTHHHHTTCCHH-HHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHH
T ss_pred CCCceecCccccHhhccCchh-HHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHH
Confidence 447889999888 3 356665 9999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHhHHHHHHhhh
Q 013477 207 ESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238 (442)
Q Consensus 207 ~~LglP~t~TSas~~LR~~YeKyLlpYE~~~~ 238 (442)
+.||+|.+++++++.||++|+|||++||++.+
T Consensus 93 ~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~ 124 (145)
T 2kk0_A 93 KGLNLPTSITSAAFTLRTQYMKYLYPYECEKR 124 (145)
T ss_dssp HHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHT
T ss_pred HHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999976
No 7
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.94 E-value=5.2e-27 Score=202.69 Aligned_cols=98 Identities=21% Similarity=0.409 Sum_probs=92.2
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHH
Q 013477 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFR 223 (442)
Q Consensus 144 ~gt~rEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR 223 (442)
++..+++..|+++|.+||+.+|+|+++|+|+|++||||+||++|+++|||++||.+++|++||+.||+|.+ +++++.||
T Consensus 6 e~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk 84 (117)
T 2jrz_A 6 EAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLR 84 (117)
T ss_dssp HTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999977 78999999
Q ss_pred HHHHHhHHHHHHhhhhcCC
Q 013477 224 IFYEKALLEYEKHKRLSGE 242 (442)
Q Consensus 224 ~~YeKyLlpYE~~~~~~G~ 242 (442)
++|+|||++||++..+...
T Consensus 85 ~~Y~k~L~~yE~~~~~~~~ 103 (117)
T 2jrz_A 85 SHYERIVYPYEMYQSGANL 103 (117)
T ss_dssp HHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9999999999999875444
No 8
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.93 E-value=9.2e-27 Score=203.43 Aligned_cols=90 Identities=21% Similarity=0.351 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHH
Q 013477 149 EQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYE 227 (442)
Q Consensus 149 Ere~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~Ye 227 (442)
....|+++|.+||+.||+|| ++|.|+|++||||+||+.|+++|||++||.+++|++||..||+|.+|+++++.||++|+
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 35689999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhh
Q 013477 228 KALLEYEKHKR 238 (442)
Q Consensus 228 KyLlpYE~~~~ 238 (442)
|||++||++..
T Consensus 92 k~L~~YE~~~~ 102 (121)
T 2rq5_A 92 QYLLSYDSLSP 102 (121)
T ss_dssp TTHHHHHHCCH
T ss_pred HHhHHHHCcCH
Confidence 99999999743
No 9
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=1.5e-26 Score=202.25 Aligned_cols=93 Identities=27% Similarity=0.482 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHH
Q 013477 147 PEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIF 225 (442)
Q Consensus 147 ~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~ 225 (442)
.++++.|++.|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|++||+.||+|.+++++++.||++
T Consensus 20 ~~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~ 99 (128)
T 1c20_A 20 DPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 99 (128)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 3799999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhh
Q 013477 226 YEKALLEYEKHKRL 239 (442)
Q Consensus 226 YeKyLlpYE~~~~~ 239 (442)
|+|||++||++.++
T Consensus 100 Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 100 YMKYLYPYECEKKN 113 (128)
T ss_dssp HHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999874
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-26 Score=198.41 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=93.2
Q ss_pred cccccCC--CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCC
Q 013477 135 NDIEMGE--ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHP 211 (442)
Q Consensus 135 ~d~~~~~--~~~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~Lgl 211 (442)
|.|.++. ..+...++++.|++.|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|++||+.||+
T Consensus 3 ~~pr~Q~ln~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~ 82 (116)
T 2li6_A 3 LNPALQEKISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQI 82 (116)
T ss_dssp CCCCSSBCCCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTS
T ss_pred CCchhhhhhcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCC
Confidence 5677777 446889999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHhHHHHHHhhhh
Q 013477 212 PKTCTTVSWTFRIFYEKALLEYEKHKRL 239 (442)
Q Consensus 212 P~t~TSas~~LR~~YeKyLlpYE~~~~~ 239 (442)
|. ++.||.+|+|||++||+++..
T Consensus 83 ~~-----~~~Lr~~Y~k~L~~yE~~~~~ 105 (116)
T 2li6_A 83 SD-----YQQLESIYFRILLPYERHMIS 105 (116)
T ss_dssp CC-----TTHHHHHHHHHHSHHHHHHHH
T ss_pred Ch-----HHHHHHHHHHHHHHHHHHHhC
Confidence 86 579999999999999999764
No 11
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.91 E-value=2.4e-25 Score=194.52 Aligned_cols=90 Identities=21% Similarity=0.382 Sum_probs=84.9
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHH
Q 013477 144 EGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTF 222 (442)
Q Consensus 144 ~gt~rEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~L 222 (442)
.+..++++.|+++|.+||+.+|+|+ ++|+|+|++||||+||++|+++|||++||++++|++||+.||+|. ++.|
T Consensus 13 ~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~L 87 (123)
T 1kkx_A 13 GSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQL 87 (123)
T ss_dssp --CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHH
T ss_pred CCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHHH
Confidence 3556799999999999999999999 999999999999999999999999999999999999999999986 7899
Q ss_pred HHHHHHhHHHHHHhhh
Q 013477 223 RIFYEKALLEYEKHKR 238 (442)
Q Consensus 223 R~~YeKyLlpYE~~~~ 238 (442)
|++|+|||++||+++.
T Consensus 88 r~~Y~k~L~~yE~~~~ 103 (123)
T 1kkx_A 88 ESIYFRILLPYERHMI 103 (123)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 12
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.81 E-value=5.4e-20 Score=151.84 Aligned_cols=90 Identities=28% Similarity=0.489 Sum_probs=81.0
Q ss_pred CCc-ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC---------CCCCCcceEeeeCCCCCCCC
Q 013477 351 ADW-VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN---------PWGITPFKKVVILPSRIDPL 420 (442)
Q Consensus 351 ad~-p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~---------~~~~~~FrRvv~LP~~vDp~ 420 (442)
|+| |++||.+|++.|.|.+.+||+++++|+|+++ ++.|+|+|+++.... ++..++|+|.|.||..||++
T Consensus 1 ~~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 79 (100)
T 3gla_A 1 AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMD-KGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADAD 79 (100)
T ss_dssp CCSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEE-TTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTT
T ss_pred CCccCcEEEEECCCEEEEEEECCCCCHHHEEEEEE-CCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChH
Confidence 456 9999999999999999999999999999999 999999999876521 57788999999999999999
Q ss_pred CceeEEeeCcEEEEEeeccCCC
Q 013477 421 QTSAVVSLHGRLYVRVPFEGSA 442 (442)
Q Consensus 421 ~v~A~~~~~G~L~I~i~k~~~~ 442 (442)
+++|.|. ||+|+|+|||.++|
T Consensus 80 ~i~A~~~-~GvL~I~~pK~~~a 100 (100)
T 3gla_A 80 GITAAGR-NGVLEIRIPKRPAA 100 (100)
T ss_dssp SCEEEEE-TTEEEEEEEBC---
T ss_pred HeEEEEe-CCEEEEEEecCCCC
Confidence 9999999 99999999999876
No 13
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.77 E-value=9e-19 Score=146.15 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=81.4
Q ss_pred Cc-ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC----CCCCCcceEeeeCCCCCCCCCceeEE
Q 013477 352 DW-VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN----PWGITPFKKVVILPSRIDPLQTSAVV 426 (442)
Q Consensus 352 d~-p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~----~~~~~~FrRvv~LP~~vDp~~v~A~~ 426 (442)
.| |++||.+|+++|.|.+.+||+++++|+|+++ ++.|+|+|+++...+ ++..+.|+|.|.||..||+++++|.|
T Consensus 4 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~-~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~ 82 (102)
T 4fei_A 4 PWTPAADWRDAGTHLDLLLDVPGVDAGTLALAED-GGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL 82 (102)
T ss_dssp ECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEE-TTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE
T ss_pred cccCcEEEEEcCCEEEEEEECCCCchHhEEEEEE-CCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE
Confidence 35 9999999999999999999999999999999 999999999876432 56677999999999999999999999
Q ss_pred eeCcEEEEEeeccCCC
Q 013477 427 SLHGRLYVRVPFEGSA 442 (442)
Q Consensus 427 ~~~G~L~I~i~k~~~~ 442 (442)
. ||+|+|++||.+.+
T Consensus 83 ~-~GvL~I~lpK~~~~ 97 (102)
T 4fei_A 83 A-GGVLTVRFEKLRPT 97 (102)
T ss_dssp E-TTEEEEEEEBSSCC
T ss_pred E-CCEEEEEEEccCcc
Confidence 9 99999999998653
No 14
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.71 E-value=3.4e-17 Score=146.60 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=81.2
Q ss_pred CCcccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC---------CCC-CCCcceEeeeCCCCCCCC
Q 013477 351 ADWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD---------NPW-GITPFKKVVILPSRIDPL 420 (442)
Q Consensus 351 ad~p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~---------~~~-~~~~FrRvv~LP~~vDp~ 420 (442)
..|+.+||.+|++.|.|.|.+||+++++|+|+++ ++.|+|+|+++... .++ ..+.|+|.|.||..||++
T Consensus 54 ~~~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~-~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~ 132 (161)
T 4eld_A 54 KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAV-GDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE 132 (161)
T ss_dssp ESCCCEEEEECSSEEEEEEECTTCCGGGEEEEEE-TTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGG
T ss_pred CcccceeEEEeCCEEEEEEECCCCChHhEEEEEE-CCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccc
Confidence 3577799999999999999999999999999999 89999999988741 146 788999999999999999
Q ss_pred CceeEEeeCcEEEEEeeccCC
Q 013477 421 QTSAVVSLHGRLYVRVPFEGS 441 (442)
Q Consensus 421 ~v~A~~~~~G~L~I~i~k~~~ 441 (442)
+++|.|. ||+|+|+|||.+.
T Consensus 133 ~i~A~~~-nGvL~I~lpK~~~ 152 (161)
T 4eld_A 133 NASAKFE-NGVLSVILPKAES 152 (161)
T ss_dssp GCEEEEE-TTEEEEEEEBCGG
T ss_pred cEEEEEE-CCEEEEEEEcCCC
Confidence 9999999 9999999999754
No 15
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.70 E-value=3.6e-17 Score=140.35 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=79.6
Q ss_pred CcccceeeecCCeEEEEEecCCCCccceEEeecCC-ceEEEecccCCCCC------CCCCCcceEeeeCCCCCCCCCc-e
Q 013477 352 DWVKINVREAKDCYEVYALVPGLLREEVRVQSDPA-GRLVITGEPEQVDN------PWGITPFKKVVILPSRIDPLQT-S 423 (442)
Q Consensus 352 d~p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~-g~L~IsGer~~~~~------~~~~~~FrRvv~LP~~vDp~~v-~ 423 (442)
.||.+||.+|++.|.|.+.+||+++++|+|+++ + +.|+|+|+++.... ++.. +|+|.|.||..||++++ +
T Consensus 23 ~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~-~~~~L~I~g~~~~~~~~~~~~~Er~~-~f~R~~~LP~~vd~~~i~~ 100 (123)
T 3aab_A 23 VYPPVDMYEEGGYLVVVADLAGFNKEKIKARVS-GQNELIIEAEREITEPGVKYLTQRPK-YVRKVIRLPYNVAKDAEIS 100 (123)
T ss_dssp HCSCEEEEEETTEEEEEEECCSCCGGGCEEEEE-TTTEEEEEEECCCCCCSCEEEECSCS-EEEEEEECSSEECTTCCCE
T ss_pred CCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEe-CCCEEEEEEEEeccCCCeEEEEEEeE-EEEEEEECCCCcCcchhCe
Confidence 469999999999999999999999999999999 7 99999999877531 4556 99999999999999999 9
Q ss_pred eEEeeCcEEEEEeeccCC
Q 013477 424 AVVSLHGRLYVRVPFEGS 441 (442)
Q Consensus 424 A~~~~~G~L~I~i~k~~~ 441 (442)
|.|. ||+|+|++||.+.
T Consensus 101 A~~~-~GvL~I~lPK~~~ 117 (123)
T 3aab_A 101 GKYE-NGVLTIRIPIAGT 117 (123)
T ss_dssp EEEE-TTEEEEEEEGGGE
T ss_pred eEEc-CCEEEEEEEcCCC
Confidence 9999 9999999999753
No 16
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.68 E-value=5.9e-17 Score=131.66 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=70.4
Q ss_pred eeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC--CCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEEE
Q 013477 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--PWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYVR 435 (442)
Q Consensus 358 v~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~--~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~ 435 (442)
+.+|++.|.|.|.+||+++++|+|+++ +|.|+|+|+++.... .+..++|+|.|.||..||+++++|.|.-||+|+|+
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVE 80 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEE-TTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEE
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEE
Confidence 467999999999999999999999999 999999999876532 34456999999999999999999999669999999
Q ss_pred eecc
Q 013477 436 VPFE 439 (442)
Q Consensus 436 i~k~ 439 (442)
+||.
T Consensus 81 lPK~ 84 (85)
T 3q9p_A 81 APMP 84 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 17
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.68 E-value=1.7e-16 Score=141.47 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=80.0
Q ss_pred cccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCC---------CCCCCcceEeeeCCCCCCCCCce
Q 013477 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN---------PWGITPFKKVVILPSRIDPLQTS 423 (442)
Q Consensus 353 ~p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~---------~~~~~~FrRvv~LP~~vDp~~v~ 423 (442)
.|++||.+|++.|.|.+.+||+++++|+|+++.++.|+|+|+++.... ++..+.|+|.|.||..||+++++
T Consensus 43 ~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~ 122 (151)
T 1gme_A 43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122 (151)
T ss_dssp GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCE
T ss_pred CCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceE
Confidence 389999999999999999999999999999943789999999887521 56788999999999999999999
Q ss_pred eEEeeCcEEEEEeeccCC
Q 013477 424 AVVSLHGRLYVRVPFEGS 441 (442)
Q Consensus 424 A~~~~~G~L~I~i~k~~~ 441 (442)
|.|. ||+|+|+|||.+.
T Consensus 123 A~~~-nGvL~I~lPK~~~ 139 (151)
T 1gme_A 123 AGLE-NGVLTVTVPKAEV 139 (151)
T ss_dssp EEEE-TTEEEEEEECCCC
T ss_pred EEEE-CCEEEEEEEccCc
Confidence 9999 9999999999754
No 18
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.68 E-value=8.2e-17 Score=134.64 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=76.0
Q ss_pred cceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceeEE-eeCcE
Q 013477 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGR 431 (442)
Q Consensus 355 ~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~ 431 (442)
.+||.+|++.|.|.+.+||+.+++|+|+++ +|.|+|+|+++... ..|....|+|.|.||..||+++++|.| . ||+
T Consensus 3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~-nGv 80 (101)
T 2wj5_A 3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVV-GDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSP-EGV 80 (101)
T ss_dssp CCCCCCCSSCEEEEEECTTSCGGGEEEEEE-TTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECT-TSE
T ss_pred cEEEEEeCCEEEEEEECCCCcHHHeEEEEE-CCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECC-CCE
Confidence 368999999999999999999999999999 99999999987642 234444699999999999999999999 7 999
Q ss_pred EEEEeeccCC
Q 013477 432 LYVRVPFEGS 441 (442)
Q Consensus 432 L~I~i~k~~~ 441 (442)
|+|++||.+.
T Consensus 81 L~I~lPK~~~ 90 (101)
T 2wj5_A 81 LSIQATPASA 90 (101)
T ss_dssp EEEEECBCCC
T ss_pred EEEEEECCCc
Confidence 9999999754
No 19
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.67 E-value=8.1e-17 Score=135.91 Aligned_cols=84 Identities=23% Similarity=0.295 Sum_probs=75.2
Q ss_pred ceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCC--CCCCCCCcceEeeeCCCCCCCCCceeEE-eeCcEE
Q 013477 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV--DNPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRL 432 (442)
Q Consensus 356 iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~--~~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L 432 (442)
.+|.+|+++|.|.|.+||+++++|+|+++ .|.|+|+|+++.. +..|....|+|.|.||..||+++++|.| . ||+|
T Consensus 5 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~-~GvL 82 (106)
T 3l1e_A 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQ-EDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSA-DGML 82 (106)
T ss_dssp EEEEECSSEEEEEEECTTSCGGGEEEEEE-TTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECT-TSEE
T ss_pred eEEEEcCCEEEEEEECCCCChHHEEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECC-CCEE
Confidence 68999999999999999999999999999 8999999997643 2233345799999999999999999999 7 9999
Q ss_pred EEEeeccCC
Q 013477 433 YVRVPFEGS 441 (442)
Q Consensus 433 ~I~i~k~~~ 441 (442)
+|++||.+.
T Consensus 83 ~I~~PK~~~ 91 (106)
T 3l1e_A 83 TFSGPKIPS 91 (106)
T ss_dssp EEEEEBCCC
T ss_pred EEEEEccCc
Confidence 999999764
No 20
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.61 E-value=5.2e-16 Score=126.97 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=67.6
Q ss_pred ecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceeEE-eeCcEEEEEe
Q 013477 360 EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLYVRV 436 (442)
Q Consensus 360 ~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~I~i 436 (442)
.|++.|.|.+.+||+++++|+|+++ ++.|+|+|+++... ..|....|+|.|.||..||+++++|.| . ||+|+|++
T Consensus 3 ~~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~-~GvL~I~~ 80 (90)
T 2y1y_A 3 MEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSS-DGVLTVNG 80 (90)
T ss_dssp ---CCEEEEEECTTSCGGGEEEEEE-TTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECT-TSEEEEEE
T ss_pred cCCCEEEEEEECCCCcHHHeEEEEE-CCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECC-CCEEEEEE
Confidence 5789999999999999999999999 89999999987542 233334799999999999999999999 8 99999999
Q ss_pred eccCC
Q 013477 437 PFEGS 441 (442)
Q Consensus 437 ~k~~~ 441 (442)
||.+.
T Consensus 81 pK~~~ 85 (90)
T 2y1y_A 81 PRKQV 85 (90)
T ss_dssp CBC--
T ss_pred EcCCC
Confidence 99754
No 21
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.55 E-value=1.2e-14 Score=144.19 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=81.8
Q ss_pred cccceeeecCC----eEEEEEecCCCCccceEEeecCCceEEEecccCCC-CCCCCCCcceEeeeCCCCCCCCCceeEEe
Q 013477 353 WVKINVREAKD----CYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV-DNPWGITPFKKVVILPSRIDPLQTSAVVS 427 (442)
Q Consensus 353 ~p~iNv~~T~d----~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~-~~~~~~~~FrRvv~LP~~vDp~~v~A~~~ 427 (442)
+|++||.+|++ .|.|.|.+||+++++|+|+++ +|.|+|+|+++.. +..+..+.|+|.|.||..||+++|+|.|+
T Consensus 98 ~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~-~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~ 176 (314)
T 2bol_A 98 DFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKAD-KNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT 176 (314)
T ss_dssp GGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEE-TTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC
T ss_pred CCccceEEcCCCCceEEEEEEECCCCchHHeEEEEE-CCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe
Confidence 49999999999 999999999999999999999 9999999998865 34577789999999999999999999998
Q ss_pred eCcEEEEEeeccCC
Q 013477 428 LHGRLYVRVPFEGS 441 (442)
Q Consensus 428 ~~G~L~I~i~k~~~ 441 (442)
-||||+|++||.+.
T Consensus 177 ~nGVL~I~lPK~~~ 190 (314)
T 2bol_A 177 TDDVLVIEAPVNEP 190 (314)
T ss_dssp SSSEEEEEEEBSSC
T ss_pred CCCEEEEEEeccCc
Confidence 89999999999764
No 22
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.53 E-value=5.6e-15 Score=135.50 Aligned_cols=83 Identities=24% Similarity=0.341 Sum_probs=71.1
Q ss_pred ceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceeEE-eeCcEE
Q 013477 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRL 432 (442)
Q Consensus 356 iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L 432 (442)
+||.+|++.|.|.+.+||+++++|+|+++ +|.|+|+|+++... ..+-...|+|.|.||..||+++|+|.| . ||+|
T Consensus 66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~-dGvL 143 (175)
T 2klr_A 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSS-DGVL 143 (175)
T ss_dssp ---CCCCSEEEEEECCSSCCGGGEEEEEE-TTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECT-TSCE
T ss_pred eEEEEcCCeEEEEEECCCCChHHEEEEEE-CCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcC-CCEE
Confidence 68999999999999999999999999999 99999999986542 222233699999999999999999999 7 9999
Q ss_pred EEEeeccC
Q 013477 433 YVRVPFEG 440 (442)
Q Consensus 433 ~I~i~k~~ 440 (442)
+|++||.+
T Consensus 144 ~I~lPK~~ 151 (175)
T 2klr_A 144 TVNGPRKQ 151 (175)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 99999975
No 23
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.52 E-value=1.1e-14 Score=144.56 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=68.7
Q ss_pred ceeee---cCCeEEEEEec-CCCCccceEEeecCCceEEEecccCCCC-----CCCCCCcceEeeeCCCCCCCCCceeEE
Q 013477 356 INVRE---AKDCYEVYALV-PGLLREEVRVQSDPAGRLVITGEPEQVD-----NPWGITPFKKVVILPSRIDPLQTSAVV 426 (442)
Q Consensus 356 iNv~~---T~d~~EVyA~~-PGl~~~~v~V~~~~~g~L~IsGer~~~~-----~~~~~~~FrRvv~LP~~vDp~~v~A~~ 426 (442)
+||.+ +++.|.|.|.+ ||++|++|+|+++ +|.|+|+|+++... .++..+.|+|+|+||..||+++|+|.|
T Consensus 223 ~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~-~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~ 301 (314)
T 2bol_A 223 LEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAK-GNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEI 301 (314)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCGGGEEEEES-SSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEE
T ss_pred CcEEEecCCCcEEEEEEEcCCCCChHHeEEEEE-CCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEE
Confidence 55544 45689999999 9999999999999 99999999998763 278899999999999999999999999
Q ss_pred eeCcEEEEEeec
Q 013477 427 SLHGRLYVRVPF 438 (442)
Q Consensus 427 ~~~G~L~I~i~k 438 (442)
. ||||+|+||+
T Consensus 302 ~-dGvL~i~~Pk 312 (314)
T 2bol_A 302 V-DGLMVVEAPL 312 (314)
T ss_dssp E-TTEEEEEEEE
T ss_pred e-CCEEEEEEec
Confidence 9 9999999997
No 24
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=98.38 E-value=1.5e-06 Score=69.74 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=70.9
Q ss_pred ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEE
Q 013477 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (442)
|++.-..|.+.+.|++.+||+.++++.|.+. .+.|+|++... ....|...+.|+..|||+..++.+. +|.|.
T Consensus 3 ~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~-~~~l~v~~~~~------~~~~y~~~~~L~~~I~~~~s~~~~~-~~~l~ 74 (92)
T 2xcm_C 3 YRHEYYQKPEEVVVTVFAKGIPKQNVNIDFG-EQILSVVIEVP------GEDAYYLQPRLFGKIIPDKCKYEVL-STKIE 74 (92)
T ss_dssp SEEEEEEETTEEEEEEECCSCCGGGEEEEEC-SSBEEEEECCT------TSCCEEECCBBSSCBCGGGCEEEEC-SSCEE
T ss_pred ccccEEeCCCEEEEEEEECCCChHHeEEEEE-CCEEEEEEEcC------CCcEEEEeeEcCCccCchhEEEEEE-CCEEE
Confidence 4677889999999999999999999999999 78899988632 1247999999999999999999999 99999
Q ss_pred EEeeccCC
Q 013477 434 VRVPFEGS 441 (442)
Q Consensus 434 I~i~k~~~ 441 (442)
|++.|.+.
T Consensus 75 i~L~K~~~ 82 (92)
T 2xcm_C 75 ICLAKADI 82 (92)
T ss_dssp EEEEBSSS
T ss_pred EEEEcCCC
Confidence 99999754
No 25
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=98.33 E-value=1.5e-06 Score=72.77 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=71.1
Q ss_pred ccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEE
Q 013477 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (442)
|++....|.+.+.|++.+||+.++++.|.+. ...|+|++... +...|...+.|+..|||+..++.+. +|.|.
T Consensus 10 ~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~-~~~l~v~~~~~------~~~~y~~~~~L~~~I~~e~s~~~~~-~~~l~ 81 (114)
T 1rl1_A 10 IKYDWYQTESQVVITLMIKNVQKNDVNVEFS-EKELSALVKLP------SGEDYNLKLELLHPIIPEQSTFKVL-STKIE 81 (114)
T ss_dssp CCEEEEECSSEEEEEECCCSCCGGGEEEECS-SSCEEEEEECT------TSSEEEEEECBSSCCCGGGEEEEEC-SSSEE
T ss_pred CCccEEeCCCEEEEEEEeCCCCHHHCEEEEE-cCEEEEEEEeC------CCcEEEEEeeCCCcCCccccEEEEE-CCEEE
Confidence 4577899999999999999999999999999 78899988632 2247999999999999999999999 99999
Q ss_pred EEeeccCC
Q 013477 434 VRVPFEGS 441 (442)
Q Consensus 434 I~i~k~~~ 441 (442)
|++.|.+.
T Consensus 82 i~L~K~~~ 89 (114)
T 1rl1_A 82 IKLKKPEA 89 (114)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 99999753
No 26
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.62 E-value=0.11 Score=44.51 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=67.3
Q ss_pred CcccceeeecCCeEEEEEecCCC---CccceEEeecCCceEEEecccCCCCCCCCCCcceEeee-CCCCCCCCCceeEEe
Q 013477 352 DWVKINVREAKDCYEVYALVPGL---LREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVI-LPSRIDPLQTSAVVS 427 (442)
Q Consensus 352 d~p~iNv~~T~d~~EVyA~~PGl---~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~-LP~~vDp~~v~A~~~ 427 (442)
..+++.=..|.+.+.|+.++||+ .++++.|.+. ...|.|+..- .+ -..|.-.+. |-..|||++-...+.
T Consensus 19 ~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~-~~~l~v~~~~--~~----~~~y~~~~~~L~~~I~~e~S~~~v~ 91 (127)
T 1x5m_A 19 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFT-ERSFDLLVKN--LN----GKSYSMIVNNLLKPISVEGSSKKVK 91 (127)
T ss_dssp ECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEEC-SSEEEEEECS--CS----SSCEEEEEECBSSCCCTTTCEEEEE
T ss_pred CccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEE-cCEEEEEEEc--CC----CCcEEEEhHHhcCccCcccCEEEEe
Confidence 34566778899999999999999 8999999999 7788997641 11 136777885 999999999999998
Q ss_pred eCcEEEEEeeccC
Q 013477 428 LHGRLYVRVPFEG 440 (442)
Q Consensus 428 ~~G~L~I~i~k~~ 440 (442)
.+.+.|++.|..
T Consensus 92 -~~kVei~L~K~~ 103 (127)
T 1x5m_A 92 -TDTVLILCRKKV 103 (127)
T ss_dssp -TTEEEEEEECSS
T ss_pred -CCEEEEEEEECC
Confidence 999999999875
No 27
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=95.33 E-value=0.054 Score=47.55 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=68.4
Q ss_pred cccceeeec-CCeEEEEEecCCCCccceEEeecCCceEEEecccCCCC-----CCCC-CCcceEeeeCCCCCCCCCceeE
Q 013477 353 WVKINVREA-KDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD-----NPWG-ITPFKKVVILPSRIDPLQTSAV 425 (442)
Q Consensus 353 ~p~iNv~~T-~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~-----~~~~-~~~FrRvv~LP~~vDp~~v~A~ 425 (442)
++++.=..| .+.+.|+.+++++.++++.|.+. ...|+|+..-.... .-.+ ...|.-.+.|-..|||++-..+
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~-~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~ 97 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFR-EQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC 97 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCSBCTTSCEEEEC-SSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEE-CCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEE
Confidence 456777889 99999999999999999999999 77888876411100 0011 1278888899999999999999
Q ss_pred EeeCcEEEEEeeccCC
Q 013477 426 VSLHGRLYVRVPFEGS 441 (442)
Q Consensus 426 ~~~~G~L~I~i~k~~~ 441 (442)
+. ...+.|++.|++.
T Consensus 98 v~-~~kIeI~L~K~e~ 112 (134)
T 1wh0_A 98 FT-ASRIDICLRKRQS 112 (134)
T ss_dssp EC-SSEEEEEEEESSS
T ss_pred Ee-CCEEEEEEEECCC
Confidence 98 9999999998753
No 28
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.085 Score=46.93 Aligned_cols=75 Identities=8% Similarity=0.197 Sum_probs=67.3
Q ss_pred ccceeeecCCeEEEEEecCCCC--ccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCC-CCCCceeEEee-C
Q 013477 354 VKINVREAKDCYEVYALVPGLL--REEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRI-DPLQTSAVVSL-H 429 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~--~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~v-Dp~~v~A~~~~-~ 429 (442)
|..-|-.+++.+-|..-+|.+- .++++|.++ ...+.. ...+++=...||..| |.++.+|.|-. .
T Consensus 4 P~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~-~~~F~F-----------~~~PYyLRL~LP~~V~e~~~~kA~YD~d~ 71 (134)
T 2k8q_A 4 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQ-ENMIIF-----------HLSPYYLRLRFPHELIDDERSTAQYDSKD 71 (134)
T ss_dssp SEEEEEECSSEEEEEEECCSSCCCSSSCCCEEC-SSSEEE-----------CSSSSCEEECCSSCEECCSSCEEEEETTT
T ss_pred ceEEEEECCCEEEEEEEcCccccCccccEEEEe-CCEEEE-----------ecCCeEEEecCCCeeecCCCcceeEeccC
Confidence 6677888999999999999999 999999999 777776 566899999999998 99999999986 8
Q ss_pred cEEEEEeeccC
Q 013477 430 GRLYVRVPFEG 440 (442)
Q Consensus 430 G~L~I~i~k~~ 440 (442)
|.|+|+|||+.
T Consensus 72 ~~~~VtLpK~~ 82 (134)
T 2k8q_A 72 ECINVKVAKLN 82 (134)
T ss_dssp TEEEEEEEESS
T ss_pred CEEEEEEeCCC
Confidence 99999999975
No 29
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.08 E-value=0.04 Score=55.51 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=54.6
Q ss_pred eEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCC-CceeEEeeCcEEEEEeecc
Q 013477 364 CYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPL-QTSAVVSLHGRLYVRVPFE 439 (442)
Q Consensus 364 ~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~-~v~A~~~~~G~L~I~i~k~ 439 (442)
.+.+..++||+++++|++.-. +.-|+| .++.|||.|.||+.+--- -+.|.+. +|.|.|+.-..
T Consensus 306 ~~~~~l~lP~~~~~~~~l~~~-gdeL~v-----------~~g~~rR~i~LP~~L~~~~v~~A~~~-~~~L~i~~~~~ 369 (374)
T 3igf_A 306 NRQVRLFLPGFDKKQVKLTQY-GPEVTV-----------EAGDQRRNIFLPPALSGRPITGAKFQ-NNYLIISFLEH 369 (374)
T ss_dssp TTEEEEECTTCCGGGCEEEEE-TTEEEE-----------EETTEEEEEECCTTTTTCCEEEEEEE-TTEEEEEECCC
T ss_pred cEEEEEECCCCCHHHeEEEEE-CCeEEE-----------EECCEeecccCCHHHcCCCccccEEE-CCEEEEEEehh
Confidence 678899999999999999998 888999 678999999999996554 5689999 99999987543
No 30
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=95.02 E-value=0.19 Score=43.13 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=66.5
Q ss_pred CCCCCcccceeeecCCeEEEEEecC-C--CCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCcee
Q 013477 348 GPPADWVKINVREAKDCYEVYALVP-G--LLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSA 424 (442)
Q Consensus 348 g~~ad~p~iNv~~T~d~~EVyA~~P-G--l~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A 424 (442)
|-=|+.|.+-=..|.+.+.|+..+| | +..++|.|.+. ...|.++.. +. .++ =...|...|+++.-.-
T Consensus 2 ~ng~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~-~~~l~v~~k----g~----~~~-~~~~L~~~I~~e~s~w 71 (131)
T 1wfi_A 2 SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQ-RRHLRVGLK----GQ----PPV-VDGELYNEVKVEESSW 71 (131)
T ss_dssp CCSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEE-TTEEEEEET----TS----CCS-BCSCBSSCBCSTTCEE
T ss_pred CCCCCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEe-CCEEEEEEC----Cc----eEE-EecccccccccccCEE
Confidence 4456778888889999999999999 6 89999999999 888888753 11 111 2346899999999999
Q ss_pred EEeeCc-EEEEEeeccC
Q 013477 425 VVSLHG-RLYVRVPFEG 440 (442)
Q Consensus 425 ~~~~~G-~L~I~i~k~~ 440 (442)
.+. +| +|.|.+.|..
T Consensus 72 ~i~-~~k~v~i~L~K~~ 87 (131)
T 1wfi_A 72 LIE-DGKVVTVHLEKIN 87 (131)
T ss_dssp EEE-TTTEEEEEEEBSS
T ss_pred EEc-CCCEEEEEEEECC
Confidence 998 88 8999999875
No 31
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=94.24 E-value=0.29 Score=41.66 Aligned_cols=86 Identities=16% Similarity=0.085 Sum_probs=67.5
Q ss_pred cCCCCCcccceeeecCCeEEEEEecC-CC-CccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCcee
Q 013477 347 VGPPADWVKINVREAKDCYEVYALVP-GL-LREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSA 424 (442)
Q Consensus 347 ~g~~ad~p~iNv~~T~d~~EVyA~~P-Gl-~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A 424 (442)
.|--++.|.+.=..|.+.+.|+..+| |+ +.++|.|.+. ...|.++..... +. .+-=...|...||++.-.-
T Consensus 13 ~~nG~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~-~~~l~v~~~~~~-----~~-~~~~~~~L~~~I~~e~S~w 85 (124)
T 1wgv_A 13 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALS-SSSIRVAMLEEN-----GE-RVLMEGKLTHKINTESSLW 85 (124)
T ss_dssp SSSSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEEC-SSEEEEEEECSS-----SE-EEEEEEEBSSCBCTTTCEE
T ss_pred ccCCCcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEE-cCEEEEEEEccC-----CC-ceEEcccccCcCCCcCCEE
Confidence 34456778888889999999999998 88 9999999999 788888754110 11 1223467999999999988
Q ss_pred EEeeCcE-EEEEeeccC
Q 013477 425 VVSLHGR-LYVRVPFEG 440 (442)
Q Consensus 425 ~~~~~G~-L~I~i~k~~ 440 (442)
.+. ++. |.|.+.|..
T Consensus 86 ~i~-~~k~v~i~L~K~~ 101 (124)
T 1wgv_A 86 SLE-PGKCVLVNLSKVG 101 (124)
T ss_dssp EEC-TTSEEEEEECBSS
T ss_pred EEe-CCCEEEEEEEECC
Confidence 888 886 999999874
No 32
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=93.95 E-value=0.57 Score=39.86 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=67.7
Q ss_pred ecCCCCCcccceeeecCCeEEEEEecC-C--CCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCc
Q 013477 346 DVGPPADWVKINVREAKDCYEVYALVP-G--LLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQT 422 (442)
Q Consensus 346 d~g~~ad~p~iNv~~T~d~~EVyA~~P-G--l~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v 422 (442)
+.|-=|+.|.+-=..|.+.++|+..+| | +..++|.|.+. ...|.+... +. ++-=...|...|+++.-
T Consensus 9 ~~~nG~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~-~~~l~v~~k----g~-----~~~~~g~L~~~I~~deS 78 (121)
T 3qor_A 9 NLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQ-RRHLRVGLK----GQ-----PAIIDGELYNEVKVEES 78 (121)
T ss_dssp CTTSSCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEE-TTEEEEEET----TS-----CCSEEEEBSSCBCGGGC
T ss_pred cCCCCCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEE-cCEEEEEEc----Cc-----ceEEecccccccccccc
Confidence 446667888899999999999999888 4 89999999999 567777443 11 12235689999999999
Q ss_pred eeEEeeCc-EEEEEeeccC
Q 013477 423 SAVVSLHG-RLYVRVPFEG 440 (442)
Q Consensus 423 ~A~~~~~G-~L~I~i~k~~ 440 (442)
.-.+. +| +|.|.+.|..
T Consensus 79 ~w~i~-~~~~i~i~L~K~~ 96 (121)
T 3qor_A 79 SWLIA-DGAVVTVHLEKIN 96 (121)
T ss_dssp EEEEE-TTTEEEEEEEBSS
T ss_pred EEEEc-CCCEEEEEEEECC
Confidence 99998 88 9999999874
No 33
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=93.81 E-value=0.25 Score=44.17 Aligned_cols=79 Identities=8% Similarity=-0.013 Sum_probs=65.5
Q ss_pred CCCcccceeeecCCeEEEEEecC-CCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEee
Q 013477 350 PADWVKINVREAKDCYEVYALVP-GLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSL 428 (442)
Q Consensus 350 ~ad~p~iNv~~T~d~~EVyA~~P-Gl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~ 428 (442)
|+..|.+-=..|.+.+.|+..+| |+..++|.|.+. ...|.|+.. +. ++ =...|...|+++.-.-.+.
T Consensus 10 ~~~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~-~~~L~v~~k--------g~-~~-l~g~L~~~I~~eeS~w~i~- 77 (157)
T 2rh0_A 10 PCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQ-SRHVALAVG--------GR-EI-LKGKLFDSTIADEGTWTLE- 77 (157)
T ss_dssp CEECSSEEEEECSSEEEEEEECCTTCCGGGEEEEEC-SSEEEEEET--------TE-EE-EEEEBSSCBCGGGCEEEEE-
T ss_pred cCCCCcEEEEecCCEEEEEEECCCCCcccceEEEEe-cCEEEEEEC--------CE-EE-EeeccccccCccccEEEEc-
Confidence 45667788889999999999997 999999999999 788888654 11 22 3467999999999999999
Q ss_pred CcE-EEEEeeccC
Q 013477 429 HGR-LYVRVPFEG 440 (442)
Q Consensus 429 ~G~-L~I~i~k~~ 440 (442)
++. |.|.|.|..
T Consensus 78 ~~k~v~I~L~K~~ 90 (157)
T 2rh0_A 78 DRKMVRIVLTKTK 90 (157)
T ss_dssp CCCEEEEEEEBSS
T ss_pred CCcEEEEEEEEcC
Confidence 886 999999875
No 34
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=93.31 E-value=0.21 Score=42.94 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=59.1
Q ss_pred ccceeeecCCeEEEEEecC-CCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEE
Q 013477 354 VKINVREAKDCYEVYALVP-GLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRL 432 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~P-Gl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L 432 (442)
|.+.=..|.+.+.|+..+| |+++++|.|.+. ...|.|+.. +.. -=...|...|||+.-.-.+. ++.|
T Consensus 5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~-~~~l~v~~~--------g~~--~~~~~L~~~I~~e~S~w~i~-~~kv 72 (131)
T 2o30_A 5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMV-GKKICVKNQ--------GEI--VIDGELLHEVDVSSLWWVIN-GDVV 72 (131)
T ss_dssp CCCEEEEETTEEEEEEECC---CCSCEEEEEE-TTEEEEEET--------TEE--EEEEEBSSCEEEEEEEEEEE-TTEE
T ss_pred CcEEEEecCCEEEEEEECCCCCCccceEEEEE-CCEEEEEEC--------CEe--eEccccccccccccCEEEEe-CCEE
Confidence 5566677999999999985 999999999999 788888753 111 23467999999999999998 9999
Q ss_pred EEEeecc
Q 013477 433 YVRVPFE 439 (442)
Q Consensus 433 ~I~i~k~ 439 (442)
.|.+.|.
T Consensus 73 ~i~L~K~ 79 (131)
T 2o30_A 73 DVNVTKK 79 (131)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9999886
No 35
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.59 Score=40.72 Aligned_cols=76 Identities=8% Similarity=0.195 Sum_probs=66.0
Q ss_pred ccceeeecCCeEEEEEecCCCC--ccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCC-CCCCceeEEee-C
Q 013477 354 VKINVREAKDCYEVYALVPGLL--REEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRI-DPLQTSAVVSL-H 429 (442)
Q Consensus 354 p~iNv~~T~d~~EVyA~~PGl~--~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~v-Dp~~v~A~~~~-~ 429 (442)
|+..|-.+++.+-|..-+|-+- ..++++.++ +..++. ...|+.=...||..| |.++-+|.|-. .
T Consensus 18 P~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd-~~~F~F-----------~~~PYyLRL~lP~~vved~~~~A~YD~d~ 85 (115)
T 3eud_A 18 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQ-ENMIIF-----------HLSPYYLRLRFPHELIDDERSTAQYDSKD 85 (115)
T ss_dssp CCEEEEECSSEEEEEEECCSCCCCSSSCEEEEE-TTEEEE-----------EETTEEEEEECSSCEECSTTCEEEEETTT
T ss_pred CcEEEEECCCEEEEEEEcCceecccCccEEEEe-CCEEEE-----------ecCCeEEEEecCcceecCCCcceEEeCCC
Confidence 6788999999999999999877 889999999 777776 455888889999996 99999999975 8
Q ss_pred cEEEEEeeccCC
Q 013477 430 GRLYVRVPFEGS 441 (442)
Q Consensus 430 G~L~I~i~k~~~ 441 (442)
|+++|+|||+..
T Consensus 86 g~~~v~lpK~~~ 97 (115)
T 3eud_A 86 ECINVKVAKLNK 97 (115)
T ss_dssp TEEEEEEEESST
T ss_pred cEEEEEEcCCcC
Confidence 999999999853
No 36
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=90.49 E-value=0.3 Score=42.48 Aligned_cols=74 Identities=8% Similarity=0.129 Sum_probs=54.2
Q ss_pred CeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcE-EEEEeeccC
Q 013477 363 DCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGR-LYVRVPFEG 440 (442)
Q Consensus 363 d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~-L~I~i~k~~ 440 (442)
+.+.|...+|++ .++.|.+. ...|.+++.-...........|.-.+.|...|||+.....++ ++. |.|.|.|..
T Consensus 23 ~~V~ltI~~~~~--~~~~V~~~-~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~-~~~~vei~L~K~~ 97 (134)
T 2cg9_X 23 NYVLITVSIADC--DAPELTIK-PSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA-NGQHYFLKLYKKD 97 (134)
T ss_dssp SEEEEECCCSSE--ESCCCCBC-SSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC-CC--CEEEEEECS
T ss_pred CEEEEEEEecCC--CceEEEEE-CCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC-CCEEEEEEEEECC
Confidence 348888888886 58899999 778999865211000000136888899999999999999998 998 999999875
No 37
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=90.14 E-value=0.58 Score=39.87 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=63.7
Q ss_pred cceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEEEE
Q 013477 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYV 434 (442)
Q Consensus 355 ~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I 434 (442)
.+.=..|.+.+.|...+|+. +++.|.+. ...|++++.-. . ....|.-.+.|-..|||+.-+..+. +..+.|
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~-~~~l~~~~~~~----~-~~~~y~~~l~L~~~I~~e~S~~~v~-~~kiei 75 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFE-KSKLTFSCLGG----S-DNFKHLNEIDLFHCIDPNDSKHKRT-DRSILC 75 (125)
T ss_dssp CEEEEECSSEEEEEECCTTE--EEEEEEEE-TTEEEEEEEET----T-TTEEEEEEEEBSSCEEEEEEEEEEC-SSCEEE
T ss_pred ceeEEeCCCEEEEEEEecCC--CceEEEEE-CCEEEEEEEeC----C-CCceEEEEEEccceeccccCEEEEC-CCEEEE
Confidence 56778899999999999995 79999999 78899986510 0 1135888899999999999999998 899999
Q ss_pred EeeccC
Q 013477 435 RVPFEG 440 (442)
Q Consensus 435 ~i~k~~ 440 (442)
+|.|..
T Consensus 76 ~L~K~~ 81 (125)
T 1ejf_A 76 CLRKGE 81 (125)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999875
No 38
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.90 E-value=0.61 Score=41.44 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=64.1
Q ss_pred cccceeeecCCeEEEEEecCCCCccceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceeEEeeCcEE
Q 013477 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRL 432 (442)
Q Consensus 353 ~p~iNv~~T~d~~EVyA~~PGl~~~~v~V~~~~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L 432 (442)
.|.+.=+.|.+.|-|..+++++ +++.|.+.|...|++++. .. .-..|.-.+.|=..|||+ .+..++ ...+
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~--~~----~~~~y~~~l~L~~~Idpe-S~~~v~-~~kI 73 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSAL--GA----QGERFEFSLELYGKIMTE-YRKNVG-LRNI 73 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEE--TT----TTEEEEEEEEBSSCEEEE-EEEEEE-SSSE
T ss_pred CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEE--cC----CCceEEEEeEhhhccccc-ceEEec-CCEE
Confidence 3667778899999999999997 578899987789999886 11 113688889999999999 888887 8889
Q ss_pred EEEeeccC
Q 013477 433 YVRVPFEG 440 (442)
Q Consensus 433 ~I~i~k~~ 440 (442)
.|+|.|++
T Consensus 74 ei~L~K~e 81 (150)
T 2kmw_A 74 IFSIQKEE 81 (150)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99999875
No 39
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=72.24 E-value=2.1 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=28.6
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlp 232 (442)
.|...|..+| .+.|..||..|.- - .+.+.|..|.+||.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLKG---R--IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTSTT---C--CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcCC---C--CHHHHHHHHHHHcCc
Confidence 4667777777 3579999999842 1 257889999998853
No 40
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=71.86 E-value=2.9 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlp 232 (442)
+|...|..+|- ..|..||..|.- - .+.+.|..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN---R--TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT---C--CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC---C--CHHHHHHHHHHHcCc
Confidence 46677777762 479999999842 1 257889999998853
No 41
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=71.27 E-value=5.2 Score=30.57 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=30.9
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlp 232 (442)
.|...|..+|- +.|..|+..|.+. .-.+.++|..|..||.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~---~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFN---NRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCS---SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcC---CCCHHHHHHHHHHHcCC
Confidence 57778888872 4799999999752 12257899999998865
No 42
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.89 E-value=5.5 Score=30.50 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.5
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlp 232 (442)
+|..+|..+| .+.|..||..|+- - .+.+.|..|.+||.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~---R--t~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR---K--SAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT---C--CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC---C--CHHHHHHHHHHHcCC
Confidence 4667787777 2579999999852 1 256888888888753
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=64.42 E-value=6.4 Score=29.31 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=29.0
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLl 231 (442)
+|...|..+| .+.|..||..|+...+ +.+.|.+|.+|++
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 5777888877 2579999999974332 5678888988764
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.45 E-value=8.4 Score=28.75 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=28.1
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLl 231 (442)
+|..+|..+|- +.|..||..|+- - .+...|.+|.+||.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~---R--t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCT---K--TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTT---S--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCC---C--CHHHHHHHHHHHcc
Confidence 46667777762 479999999942 2 25688999999875
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=57.92 E-value=14 Score=26.73 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.9
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
.|...|..+| .+.|..|+..|++.. -.+.++|..|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNN---RTSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSS---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCC---CCHHHHHHHHHHHH
Confidence 4777888887 247999999997631 22568888888876
No 46
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=57.84 E-value=8.8 Score=28.37 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=27.5
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLl 231 (442)
+|..+|..+| .+.|..||..|.- - .+.++|..|.+||.
T Consensus 18 ~L~~~v~~~G-------~~~W~~Ia~~~~~---R--t~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 18 QLRALVRQFG-------QQDWKFLASHFPN---R--TDQQCQYRWLRVLS 55 (60)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHCSS---S--CHHHHHHHHHHTSC
T ss_pred HHHHHHHHhC-------CCCHHHHHHHccC---C--CHHHHHHHHHHHcC
Confidence 4666777776 2579999999842 2 25688999988874
No 47
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.24 E-value=19 Score=27.04 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=28.9
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHh
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKH 236 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~~ 236 (442)
+|...|..+| ..|..||..+| . .+.+.|..|..||.+--..
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g--R----t~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG--R----TAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS--S----CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC--------CCHHHHhcccC--c----CHHHHHHHHHHHhChHhcC
Confidence 4555666665 27999999333 2 2578999999999886543
No 48
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.67 E-value=11 Score=29.10 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=30.7
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlp 232 (442)
+|...|..+|--. +..+.|..||..|+- - ...++|.+|.+||.+
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~---R--t~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGN---R--TAKQVASQVQKYFIK 61 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSS---S--CHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCC---C--CHHHHHHHHHHHHHH
Confidence 4666777777311 122689999999952 2 257899999999865
No 49
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=48.43 E-value=25 Score=26.96 Aligned_cols=41 Identities=7% Similarity=0.208 Sum_probs=29.9
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEK 235 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~ 235 (442)
.|..+|..+|- .|..||..|.- - ....+|.+|.+||....+
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~---R--t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGS---R--TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS---S--CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCC---C--CHHHHHHHHHHHHHHHHh
Confidence 46667777763 79999998742 2 257899999999876543
No 50
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=42.36 E-value=35 Score=25.98 Aligned_cols=40 Identities=8% Similarity=0.112 Sum_probs=28.5
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLl 231 (442)
+|...|..+|- +.|..|+..+.+..- .+.++|.-|..+|-
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 56777888873 369999999876421 25678888877653
No 51
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=40.16 E-value=27 Score=26.38 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=31.4
Q ss_pred hHHHHHHhcCcc-cccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 182 KLWRAVVRLGGY-EVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 182 kLYk~V~~rGGy-dkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
.|+..|.+.... ..|+.++.|.++++.. +|. .| -.+.|..|.|+|
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~-Ht--wqSwRdRy~k~l 57 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQ-HS--WQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSS-CC--SHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCC-CC--HHHHHHHHHHHc
Confidence 567777666321 3788899999999832 333 22 468999999987
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=35.95 E-value=20 Score=28.55 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=25.3
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHh
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKA 229 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKy 229 (442)
+|..+|..+| +.|..||..++- . ...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~-R----T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGS-R----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSS-C----CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCC-C----CHHHHHHHHHHh
Confidence 4556677777 579999999963 2 256788888765
No 53
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=35.26 E-value=29 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=26.8
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLl 231 (442)
+|..+|..+|. +.|..||..|+- - .+.+.+..|.++|.
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT---R--NPRQCRERWNNYIN 48 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT---S--CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC---C--CHHHHHHHHHHHHc
Confidence 57777888874 579999999852 1 14567777777664
No 54
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=34.08 E-value=32 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=26.1
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
+|...|..+|. +.|..||..|. +- .+.+.+..|.++|
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~---~R--t~~qcr~Rw~~~l 50 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK---GR--IGKQCRERWHNHL 50 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST---TC--CHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc---CC--CHHHHHHHHHhcc
Confidence 46677777774 46999999883 11 2467778887776
No 55
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=28.20 E-value=74 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=30.3
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHh
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKH 236 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~~ 236 (442)
.|..+|..+| +.|..|+..|. +-| ...+|..|..++....++
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~---gRt--~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK---NRS--DNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS---SSC--HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC---CCC--HHHHHHHHHHHHhhHHHh
Confidence 5677778887 37999999883 222 568899998887665443
No 56
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=27.64 E-value=58 Score=26.23 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=26.2
Q ss_pred hhHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 181 LKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 181 ykLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
..|..+|..+| +.|..|+..|. +-| ...++..|..+|
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l~---gRt--~~~~k~rw~~~~ 101 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLLP---GRT--DNAIKNHWNSTM 101 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTCT---TCC--HHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--------CCHHHHHHHcC---CCC--HHHHHHHHHHHH
Confidence 35667777777 37999999872 222 568888888765
No 57
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=26.29 E-value=1.9e+02 Score=25.29 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCccccc---ccCcchhHhhhhc
Q 013477 149 EQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVV---TASKLWRQVGESF 209 (442)
Q Consensus 149 Ere~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkV---t~~KkWreVa~~L 209 (442)
.++.|+..|+.++++||..++. =||..+|..|.+.-=+=.. ..-+.|..|++.|
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~~-------k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L 62 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVKY-------ADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCF 62 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCH-------HHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCeeecH-------HHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHH
Confidence 5779999999999999997754 3778888888754221111 3457899999888
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.79 E-value=68 Score=25.11 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHhhhhcCCCCCCC
Q 013477 183 LWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLPA 247 (442)
Q Consensus 183 LYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~~~~~~G~~~~P~ 247 (442)
|-+++..+++- ..+.|..||..|| . .+..++.+|..++... ....|..+.|.
T Consensus 19 fe~al~~~p~~----t~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d~---~~~~G~vp~P~ 70 (72)
T 2cqq_A 19 LTRSMVKFPGG----TPGRWEKIAHELG--R----SVTDVTTKAKQLKDSV---TCSPGMVSGPS 70 (72)
T ss_dssp HHHHHHHSCTT----CTTHHHHHHHHHT--S----CHHHHHHHHHHHHHSC---CCCSCCCSCSC
T ss_pred HHHHHHHCCCC----CCcHHHHHHHHhC--C----CHHHHHHHHHHHHHhc---CccCCCCCCCC
Confidence 34445555432 1367999999986 2 2578889998876552 23357666653
No 59
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=24.47 E-value=60 Score=27.21 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=25.8
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLl 231 (442)
+|-..|..+|. +.|..||..|.- - .+.+.+..|.++|.
T Consensus 37 ~L~~~v~~~g~-------~~W~~Ia~~l~~---R--t~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 37 RVIEHVQKYGP-------KRWSDIAKHLKG---R--IGKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHTCS-------CCHHHHHHHSSS---C--CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCC-------CCHHHHHHHhcC---C--cHHHHHHHHHHhcc
Confidence 45666776663 469999999842 2 24677888877763
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=23.82 E-value=2e+02 Score=23.58 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=27.6
Q ss_pred CcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHhhhhcCCCCCC
Q 013477 199 SKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLP 246 (442)
Q Consensus 199 ~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlpYE~~~~~~G~~~~P 246 (442)
...|..||..|+- . | ...++.+|..++...... ..|..+.|
T Consensus 31 ~~rW~~IA~~vpG-R--T--~~q~k~ry~~l~~dv~~i--esg~vp~P 71 (93)
T 2cjj_A 31 PDRWANVARAVEG-R--T--PEEVKKHYEILVEDIKYI--ESGKVPFP 71 (93)
T ss_dssp TTHHHHHHHHSTT-C--C--HHHHHHHHHHHHHHHHHH--HHSSCCC-
T ss_pred CchHHHHHHHcCC-C--C--HHHHHHHHHHHHHHHHHh--hcCCCCCC
Confidence 4689999999952 2 2 578999999877654333 34665555
No 61
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.56 E-value=91 Score=24.50 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=20.1
Q ss_pred CcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 013477 199 SKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (442)
Q Consensus 199 ~KkWreVa~~LglP~t~TSas~~LR~~YeKyL 230 (442)
.+.|..||..|+- -| ...+|.+|..++
T Consensus 41 ~~rW~~IA~~vpG---RT--~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 41 SDCWDKIARCVPS---KS--KEDCIARYKLLV 67 (73)
T ss_dssp HHHHHHHGGGCSS---SC--HHHHHHHHHHHH
T ss_pred CchHHHHHHHcCC---CC--HHHHHHHHHHHH
Confidence 3689999999952 22 568888888765
No 62
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=21.98 E-value=75 Score=26.79 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=27.5
Q ss_pred hHHHHHHhcCcccccccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 013477 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (442)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~~LglP~t~TSas~~LR~~YeKyLlp 232 (442)
.|..+|..+|. .|..||..|. +-| ...+|..|..+|..
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~---gRt--~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP---GRT--DNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST---TCC--HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC---CCC--HHHHHHHHHHHHHH
Confidence 46677888884 6999999874 222 56889998887743
No 63
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=20.19 E-value=49 Score=30.45 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhH
Q 013477 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKL 183 (442)
Q Consensus 144 ~gt~rEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykL 183 (442)
..+..||..|+..|.+++.+- ++-+.|.+-|-+|+.|.|
T Consensus 130 a~s~~Er~~FI~sL~K~y~ky-~~G~~P~l~n~~~~~f~l 168 (171)
T 3hie_A 130 TNSAKERTVFIKSLITLYIQT-FEGHVPELVNWDLSLFYL 168 (171)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT-SCSSCCTTEEECCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHH-cCCCCCeEecccHHHccc
Confidence 466889999999999998854 233789998888888876
Done!