BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013478
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3B|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3C|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
Length = 356
Score = 590 bits (1522), Expect = e-169, Method: Compositional matrix adjust.
Identities = 276/363 (76%), Positives = 319/363 (87%), Gaps = 10/363 (2%)
Query: 64 LEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKW 123
L DL+NL+++ T+KIIAEYI W IGG+G+D+RSK++T+ PV PS+LPKW
Sbjct: 4 LTDLVNLNLSDTTEKIIAEYI--------W--IGGSGMDLRSKARTLPGPVTDPSKLPKW 53
Query: 124 NYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEI 183
NYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+I
Sbjct: 54 NYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKI 113
Query: 184 FSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIAD 243
FS+ +V+AE PW+GIEQEYTLLQ++ WPLGWP+G +PGPQGPYYCG GA+KSFGRDI D
Sbjct: 114 FSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVD 173
Query: 244 AHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 303
AHYKACLYAGINISG NGEVMPGQWE+QVGPSVGI +GD +W +RY+LERITE AGVV++
Sbjct: 174 AHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVT 233
Query: 304 LDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLT 363
DPKPI GDWNGAG HTNYST+SMR+EGGYE IK AI L LRHKEHI+AYGEGNERRLT
Sbjct: 234 FDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLT 293
Query: 364 GKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTIL 423
G+HETA I++FSWGVANRG S+RVGRETE+ GKGY EDRRPASNMDPYVVTS++AETTI+
Sbjct: 294 GRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIV 353
Query: 424 WEP 426
W+P
Sbjct: 354 WKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|B Chain B, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|C Chain C, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|D Chain D, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|E Chain E, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|F Chain F, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|G Chain G, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|H Chain H, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|I Chain I, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|J Chain J, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|K Chain K, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|L Chain L, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|M Chain M, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|N Chain N, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|O Chain O, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|P Chain P, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|Q Chain Q, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|R Chain R, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|S Chain S, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
pdb|3FKY|T Chain T, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
From The Yeast Saccharomyces Cerevisiae
Length = 370
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/358 (54%), Positives = 243/358 (67%), Gaps = 17/358 (4%)
Query: 64 LEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKW 123
L+ L LD +IIAEY+ W I GTG ++RSK +T+ K + +LP+W
Sbjct: 12 LQKYLELD---QRGRIIAEYV--------W--IDGTG-NLRSKGRTLKKRITSIDQLPEW 57
Query: 124 NYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEI 183
N+DGSST QAPG DS++ L P A + DPFR G+NI+V+ Y G P N RH AA++
Sbjct: 58 NFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKL 117
Query: 184 FSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIAD 243
F+ K E WFG+EQEYTL GWP G YP PQGPYYCG GA K + RD+ +
Sbjct: 118 FAAHK--DEEIWFGLEQEYTLFDMYDD-VYGWPKGGYPAPQGPYYCGVGAGKVYARDMIE 174
Query: 244 AHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 303
AHY+ACLYAG+ ISG N EVMP QWE+QVGP GID GD +W +RY L R+ E+ G+ +S
Sbjct: 175 AHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKIS 234
Query: 304 LDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLT 363
PKP++GDWNGAGCH N STK MR+ GG + I++AI LS RH EHI YG N+ RLT
Sbjct: 235 FHPKPLKGDWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLT 294
Query: 364 GKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETT 421
G+HETAS+ +FS GVANRG SIR+ R K+G GY EDRRPASN+DPY+VT ++ ET
Sbjct: 295 GRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETV 352
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/356 (52%), Positives = 243/356 (68%), Gaps = 17/356 (4%)
Query: 74 PYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQA 133
P +K+ A YI W I GTG +R K++T+ + ELP+WN+DGSST Q+
Sbjct: 21 PQGEKVQAMYI--------W--IDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQS 70
Query: 134 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 193
G +S++ L P A+F+DPFR N LV C+ + +P TN RH I VS +
Sbjct: 71 EGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIMD--MVSNQH 128
Query: 194 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 253
PWFG+EQEYTL+ + P GWP +PGPQGPYYCG GADK++GRDI +AHY+ACLYAG
Sbjct: 129 PWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAG 187
Query: 254 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 313
I I+GTN EVMP QWE+Q+GP GID GDH+W +R++L R+ E GV+ + DPKPI G+W
Sbjct: 188 IKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNW 247
Query: 314 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETA 369
NGAGCHTN+STK+MREE G + I+++I LS RH+ HI AY G N RRLTG HET+
Sbjct: 248 NGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETS 307
Query: 370 SIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 425
+I+ FS GVANRG SIR+ R ++ KGY EDRRP++N DP+ VT L T +L E
Sbjct: 308 NINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 363
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/356 (51%), Positives = 241/356 (67%), Gaps = 17/356 (4%)
Query: 74 PYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQA 133
P +K+ A YI W I GTG +R K++T+ + ELP+WN+DGSST Q+
Sbjct: 40 PQGEKVQAMYI--------W--IDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQS 89
Query: 134 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV 193
G +S++ L P A+F+DPFR N LV+C+ + P TN RH I VS +
Sbjct: 90 EGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMD--MVSNQH 147
Query: 194 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAG 253
PWFG+EQEYTL+ + P GWP +PGPQGPYYCG GAD+++GRDI +AHY+ACLYAG
Sbjct: 148 PWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAG 206
Query: 254 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 313
+ I+GTN EVMP QWE+Q+GP GI GDH+W +R++L R+ E GV+ + DPKPI G+W
Sbjct: 207 VKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNW 266
Query: 314 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETA 369
NGAGCHTN+STK+MREE G + I++AI LS RH+ HI AY G N RRLTG HET+
Sbjct: 267 NGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETS 326
Query: 370 SIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 425
+I+ FS GVANR SIR+ R ++ KGY EDRRP++N DP+ VT L T +L E
Sbjct: 327 NINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 382
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2WGS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WHI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|4ACF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate
Length = 486
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 135/339 (39%), Gaps = 54/339 (15%)
Query: 125 YDGSST-GQAPGEDSEVILYP--QAIFKDPFRGGNNI---LVICDTYTPAGEPIPTNKRH 178
+DGSS G +S+++L P + DPFR + + D +T EP + R+
Sbjct: 61 FDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTL--EPYSRDPRN 118
Query: 179 --RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVK-----------------WPLGWPVGA 219
R AE + S A+ +FG E E+ + W G A
Sbjct: 119 IARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEA 178
Query: 220 YPGP--------QGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG-QWEY 270
P +G Y+ A D+ D+ D + +G + + EV G Q E
Sbjct: 179 DGSPNRGYKVRHKGGYFPVAPNDQYV--DLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 236
Query: 271 QVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS-----TK 325
+ + A D + +Y+++ Q G ++ PKP+ GD NG+G H + S
Sbjct: 237 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAP 295
Query: 326 SMREEGGY----ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGV 378
M +E GY +T + I L L H + A+ + +RL +E A I+ +
Sbjct: 296 LMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVPGYE-APIN-LVYSQ 352
Query: 379 ANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLL 417
NR +R+ LE R P S+ +PY+ S +
Sbjct: 353 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 391
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|B Chain B, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|C Chain C, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|D Chain D, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|E Chain E, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|F Chain F, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|G Chain G, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|H Chain H, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|I Chain I, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|J Chain J, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|K Chain K, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|L Chain L, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|M Chain M, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|N Chain N, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|O Chain O, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|P Chain P, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|Q Chain Q, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|R Chain R, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|S Chain S, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|T Chain T, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|U Chain U, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|V Chain V, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|W Chain W, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|X Chain X, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|A Chain A, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|B Chain B, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|C Chain C, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|D Chain D, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|E Chain E, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|F Chain F, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|G Chain G, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|H Chain H, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|I Chain I, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|J Chain J, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|K Chain K, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|L Chain L, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|M Chain M, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|N Chain N, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|O Chain O, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|P Chain P, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|Q Chain Q, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|R Chain R, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|S Chain S, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|T Chain T, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|U Chain U, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|V Chain V, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|W Chain W, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|X Chain X, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
Length = 477
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 135/339 (39%), Gaps = 54/339 (15%)
Query: 125 YDGSST-GQAPGEDSEVILYP--QAIFKDPFRGGNNI---LVICDTYTPAGEPIPTNKRH 178
+DGSS G +S+++L P + DPFR + + D +T EP + R+
Sbjct: 52 FDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFT--LEPYSRDPRN 109
Query: 179 --RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVK-----------------WPLGWPVGA 219
R AE + S A+ +FG E E+ + W G A
Sbjct: 110 IARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEA 169
Query: 220 YPGP--------QGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG-QWEY 270
P +G Y+ A D+ D+ D + +G + + EV G Q E
Sbjct: 170 DGSPNRGYKVRHKGGYFPVAPNDQYV--DLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 227
Query: 271 QVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS-----TK 325
+ + A D + +Y+++ Q G ++ PKP+ GD NG+G H + S
Sbjct: 228 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAP 286
Query: 326 SMREEGGY----ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGV 378
M +E GY +T + I L L H + A+ + +RL +E A I+ +
Sbjct: 287 LMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVPGYE-APIN-LVYSQ 343
Query: 379 ANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLL 417
NR +R+ LE R P S+ +PY+ S +
Sbjct: 344 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 382
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 62 NRLEDLLNLDITPYTDKIIAEYICQNNTIS 91
N +ED+L LD+TP K++ E I + NTIS
Sbjct: 281 NGVEDILELDLTPLEQKLLGESINEVNTIS 310
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 62 NRLEDLLNLDITPYTDKIIAEYICQNNTIS 91
N +ED+L LD+TP K++ E I + NTIS
Sbjct: 281 NGVEDILELDLTPLEQKLLGESINEVNTIS 310
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 25/137 (18%)
Query: 152 FRGGNNILVICDTYTPAGE--PIPTN---------KRHRAAEIFS---NSKVSAEVP--- 194
F + I+ I + Y + P+P N + R AEI KV + P
Sbjct: 144 FEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGH 203
Query: 195 --WFGIEQEYTLLQQNVKWPLGWP-VGAYPGPQGPYYCGAGADKSFGRDIADAHY----- 246
W I L+ V WP+ W G P G + AG+ G++I Y
Sbjct: 204 EGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP 263
Query: 247 KACLYAGINISGTNGEV 263
+ +Y + I G G++
Sbjct: 264 LSLMYEFVGIKGQKGKM 280
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 154 GGNNILVICDTYT--PAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKW 211
GGNN+ ++ D YT AG P N + F NSK P GI + L V
Sbjct: 203 GGNNLKLVGDAYTYGIAGTPYKVNHENNGLIGFGNSKEEHSDPK-GILSQDPLTNYAVLG 261
Query: 212 PLGWPVGAYPGPQG 225
G P+ Y +G
Sbjct: 262 DSGSPLFVYDREKG 275
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 137 DSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKV 189
DSE+ + P KD G +V+ Y P G PIPT + A + +N+ V
Sbjct: 119 DSEITMVPSVAAKDGHIGH---IVMQYMYVPPGAPIPTTRDDYAWQSGTNASV 168
>pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|A Chain A, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|A Chain A, The Structure Of Rhinovirus 16
pdb|1ND3|A Chain A, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 285
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 137 DSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKV 189
DSE+ + P KD G +V+ Y P G PIPT + A + +N+ V
Sbjct: 119 DSEITMVPSVAAKDGHIGH---IVMQYMYVPPGAPIPTTRDDYAWQSGTNASV 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,349,588
Number of Sequences: 62578
Number of extensions: 662942
Number of successful extensions: 904
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 15
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)