Query 013478
Match_columns 442
No_of_seqs 260 out of 1620
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 1.8E-99 6E-104 775.1 29.6 349 62-427 10-358 (370)
2 2d3a_A Glutamine synthetase; l 100.0 3.3E-97 1E-101 755.1 29.2 351 63-426 6-356 (356)
3 2ojw_A Glutamine synthetase; a 100.0 2E-94 6.7E-99 741.1 30.4 350 61-426 30-383 (384)
4 3ng0_A Glutamine synthetase; G 100.0 1.2E-84 4.1E-89 684.5 27.2 320 99-424 23-385 (473)
5 3qaj_A Glutamine synthetase; A 100.0 1.9E-84 6.4E-89 677.9 18.0 313 100-424 25-357 (444)
6 4acf_A Glutamine synthetase 1; 100.0 1.2E-82 4E-87 672.0 25.8 335 80-424 17-398 (486)
7 4hpp_A Probable glutamine synt 100.0 1.6E-82 5.6E-87 662.8 23.2 307 100-424 14-356 (443)
8 1f52_A Glutamine synthetase; A 100.0 5.7E-82 1.9E-86 663.8 26.8 322 96-424 17-381 (468)
9 2j9i_A Glutamate-ammonia ligas 100.0 1.6E-73 5.5E-78 592.3 10.2 296 102-424 23-343 (421)
10 3o6x_A Glutamine synthetase; t 100.0 1.8E-56 6.1E-61 481.7 17.0 281 125-425 128-500 (729)
11 1r8g_A Hypothetical protein YB 98.1 3.8E-05 1.3E-09 77.9 14.5 131 192-358 10-168 (372)
12 2gwd_A Glutamate cysteine liga 98.0 0.00013 4.4E-09 76.0 15.8 152 175-358 16-213 (449)
13 3ln6_A Glutathione biosynthesi 94.3 0.15 5.2E-06 56.3 10.3 98 258-357 54-194 (750)
14 3ln7_A Glutathione biosynthesi 87.2 1.3 4.3E-05 49.0 8.2 97 258-356 53-194 (757)
15 1va6_A Glutamate--cysteine lig 75.6 4.1 0.00014 43.0 6.6 38 258-295 56-94 (518)
16 2fao_A Probable ATP-dependent 69.6 27 0.00093 34.4 10.4 126 249-390 111-243 (309)
17 3nzt_A Glutamate--cysteine lig 66.1 11 0.00038 39.8 7.2 96 257-355 66-204 (525)
18 1nxi_A Conserved hypothetical 62.1 21 0.00073 30.6 7.2 90 181-301 22-114 (132)
19 2iru_A Putative DNA ligase-lik 58.1 23 0.00078 34.8 7.4 125 250-390 106-245 (303)
20 1zpv_A ACT domain protein; str 51.7 10 0.00034 29.3 3.1 64 242-307 19-82 (91)
21 3ose_A Serine/threonine-protei 33.9 40 0.0014 28.3 4.2 63 238-300 39-120 (120)
22 1v5s_A MAP/microtubule affinit 30.0 1E+02 0.0035 26.2 6.1 62 239-300 40-120 (126)
23 1u8s_A Glycine cleavage system 21.5 43 0.0015 29.6 2.3 66 240-307 105-178 (192)
24 1u8s_A Glycine cleavage system 21.4 3.2E+02 0.011 23.8 8.1 66 240-308 18-83 (192)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-99 Score=775.07 Aligned_cols=349 Identities=55% Similarity=1.022 Sum_probs=307.4
Q ss_pred HHHHHhhcCCCCCCCcceeEEeecccCcceeeEeecccccCCCceeeeeeCCCCCCCCCCccccccCCCCCCCCCCccEE
Q 013478 62 NRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVI 141 (442)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~yi~~~~~i~~w~~idg~g~DlrGk~r~~~~p~~~~~~l~~~~fDGSs~g~a~~~~sD~~ 141 (442)
..|++||+| ++.++++++|+ | +|++| .+|||++++...++.++++|+|+|||||++|+++++||++
T Consensus 10 ~~~~~~~~l---~~~~i~~v~~~--------~--~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~ 75 (370)
T 3fky_A 10 QILQKYLEL---DQRGRIIAEYV--------W--IDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIY 75 (370)
T ss_dssp --------------CCCEEEEEE--------E--ECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EE
T ss_pred HHHHHHhCc---ccCCeEEEEEE--------E--EcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCee
Confidence 557899999 78899999999 9 99999 7999999988777888889999999999999999999999
Q ss_pred EEeEeeeecCCCCCCeEEEEEEeecCCCCCCCCCHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCC
Q 013478 142 LYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYP 221 (442)
Q Consensus 142 L~Pd~~~~~P~~~~~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p 221 (442)
|+||+++++||+++++++|+||++++||+|++.|||++|++++++++ |+++++|+|+|||||+.+ ..+.+||.+++|
T Consensus 76 l~Pdt~~~~Pw~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~-~~~~~~p~~~~p 152 (370)
T 3fky_A 76 LKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMY-DDVYGWPKGGYP 152 (370)
T ss_dssp EEEEEEEECTTTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTT-SSBTTCCTTSBC
T ss_pred EeeeEEEEcCCCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccC-CCcccCCCCCcc
Confidence 99999999999997799999999999999999999999999999876 999999999999999987 457899999999
Q ss_pred CCCCCceeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcE
Q 013478 222 GPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 301 (442)
Q Consensus 222 ~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~ 301 (442)
.++|+|||..+.+..+.++++++|+++|+++||+|+++|||++||||||+++|++++++||+++++|++||+||++||+.
T Consensus 153 ~~~g~yy~~~~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ 232 (370)
T 3fky_A 153 APQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIK 232 (370)
T ss_dssp SCSSSCTTCCSTTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence 99999999988777677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCCCCCceeeeeccccccccCCchhhHHHHHHhhHHHHHHHHhcccccccccCCCCCCCCCCCceeeccCCC
Q 013478 302 LSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANR 381 (442)
Q Consensus 302 aTFmPKP~~g~~~GSG~H~h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~a~~~nsYkRL~~~~eap~~~~~sWG~~NR 381 (442)
|||||||+.|+|+|||||+|+|||++++++|++.+++||+||.++|+++|++|+.||||||+|++|||++.+++||++||
T Consensus 233 ATFmpKP~~gd~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NR 312 (370)
T 3fky_A 233 ISFHPKPLKGDWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANR 312 (370)
T ss_dssp EECCSCSSSSSSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCT
T ss_pred EEEcccccCCCCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCC
Confidence 99999999966899999999999998777888889999999955999999999999999999999999976799999999
Q ss_pred cceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCCC
Q 013478 382 GCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPT 427 (442)
Q Consensus 382 ~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G~~~ 427 (442)
+|+||||......+++|||+|+||++|||||++|+||+|||+|++.
T Consensus 313 sa~iRIp~~~~~~~~~riE~R~pda~aNPYLa~Aailaagl~Gi~~ 358 (370)
T 3fky_A 313 GSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDN 358 (370)
T ss_dssp TSSEEECHHHHHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBTT
T ss_pred ceeEEecCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcCccc
Confidence 9999999865433357999999999999999999999999999853
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=3.3e-97 Score=755.14 Aligned_cols=351 Identities=78% Similarity=1.389 Sum_probs=324.7
Q ss_pred HHHHhhcCCCCCCCcceeEEeecccCcceeeEeecccccCCCceeeeeeCCCCCCCCCCccccccCCCCCCCCCCccEEE
Q 013478 63 RLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVIL 142 (442)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~yi~~~~~i~~w~~idg~g~DlrGk~r~~~~p~~~~~~l~~~~fDGSs~g~a~~~~sD~~L 142 (442)
.|.+ ++| ++++++++++|+ | ||+.|+|+|||++++..+.+.++++++|+|||||++++.+++||++|
T Consensus 6 ~~~~-~~~--~~~~~~~~v~~~--------~--vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fdgss~~~~~~~~sD~~l 72 (356)
T 2d3a_A 6 DLVN-LNL--SDTTEKIIAEYI--------W--IGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVIL 72 (356)
T ss_dssp HHHT-CCG--GGTCSCEEEEEE--------E--ECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEE
T ss_pred hhhc-cCC--CCCCCeEEEEEE--------E--EcCCCCcccceEEECCcchhhHhhcCcceecccccccccCcCCcEEE
Confidence 4444 666 247899999999 9 99999999999999999999998899999999999999989999999
Q ss_pred EeEeeeecCCCCCCeEEEEEEeecCCCCCCCCCHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCCC
Q 013478 143 YPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPG 222 (442)
Q Consensus 143 ~Pd~~~~~P~~~~~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~ 222 (442)
+||+++++||+++++++|+||++++||+|++.|||++|+++++++++.|+++++|+|+|||||+.+.+.+++|+..|+|.
T Consensus 73 ~PDt~~~~P~~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~ 152 (356)
T 2d3a_A 73 YPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPG 152 (356)
T ss_dssp EEEEEEECTTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCS
T ss_pred EEEEEEECCcCCCCceEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCC
Confidence 99999999999877999999999999999999999999999999998999999999999999997655677898878999
Q ss_pred CCCCceeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEE
Q 013478 223 PQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVL 302 (442)
Q Consensus 223 ~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~a 302 (442)
++|+||+..+.++.+.++++++|+++|+++||+|+++|||++||||||+++|++++++||+++++|++||+||++||++|
T Consensus 153 ~~g~y~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~a 232 (356)
T 2d3a_A 153 PQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVV 232 (356)
T ss_dssp CSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred CCCCcCcCcccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 99999999988876779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCCCCceeeeeccccccccCCchhhHHHHHHhhHHHHHHHHhcccccccccCCCCCCCCCCCceeeccCCCc
Q 013478 303 SLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRG 382 (442)
Q Consensus 303 TFmPKP~~g~~~GSG~H~h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~a~~~nsYkRL~~~~eap~~~~~sWG~~NR~ 382 (442)
||||||+.++|+|||||+|+||+++++++|.+.+..++.+++++|+++|++|+.||||||+|++|||++.+++||.+||+
T Consensus 233 TFmpKP~~~d~~GSG~H~H~Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~~~nSYkRL~pg~eap~~~~~swG~~NRs 312 (356)
T 2d3a_A 233 TFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRG 312 (356)
T ss_dssp ECCSCSSCSSSCCCBEEEEEECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTT
T ss_pred EECCCccCCCCCCCcceEEechhhhccCCCHHHHHHHHHHHHHHHHHHHHhHccChHHHccCCccCCCcceeEEeccCCe
Confidence 99999997558999999999998866567888898888888899999999999999999999999998889999999999
Q ss_pred ceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 013478 383 CSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 426 (442)
Q Consensus 383 a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G~~ 426 (442)
|+||||......+++|||+|+||++|||||++|++|+||++++|
T Consensus 313 a~iRIp~~~~~~~~~riE~R~pd~~aNPYLa~Aailaagl~~~~ 356 (356)
T 2d3a_A 313 ASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356 (356)
T ss_dssp SSEECCHHHHHTTCCCEEECCCBTTCCHHHHHHHHHHHHTTCC-
T ss_pred eeEEEccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 99999976433346799999999999999999999999998865
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=2e-94 Score=741.12 Aligned_cols=350 Identities=53% Similarity=0.995 Sum_probs=312.5
Q ss_pred HHHHHHhhcCCCCCCCcceeEEeecccCcceeeEeecccccCCCceeeeeeCCCCCCCCCCccccccCCCCCCCCCCccE
Q 013478 61 VNRLEDLLNLDITPYTDKIIAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEV 140 (442)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~yi~~~~~i~~w~~idg~g~DlrGk~r~~~~p~~~~~~l~~~~fDGSs~g~a~~~~sD~ 140 (442)
-+.|++||+| ++.++++++|+ | +|++|+.+|||+++.....+.++++|+|+|||||++++.+++||+
T Consensus 30 ~~~l~~~l~~---~~~~~~~v~~~--------~--~D~~G~~~R~K~ip~~~~~~~~~~~p~~~~dgss~~~~~~~~sD~ 96 (384)
T 2ojw_A 30 KGIKQVYMSL---PQGEKVQAMYI--------W--IDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDM 96 (384)
T ss_dssp HHHHHHHHTS---CCCSCEEEEEE--------E--ECTTSSCEEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEE
T ss_pred HHHHHHHHhC---CCCCcEEEEEE--------E--ECCCCCeeeEEEEEHHHhhhhHhhCccccccCcccccccCCCCcE
Confidence 3778999999 57789999999 9 888875466666666555555566789999999999988899999
Q ss_pred EEEeEeeeecCCCCCCeEEEEEEeecCCCCCCCCCHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCC
Q 013478 141 ILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAY 220 (442)
Q Consensus 141 ~L~Pd~~~~~P~~~~~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~ 220 (442)
+|+||+++++||+++++++|+||++++||+|++.|||++|++++++++ |+++++|+|+|||||+.+ ..+.+||..++
T Consensus 97 ~l~PDt~~~~Pw~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~-~~~~~~~~~g~ 173 (384)
T 2ojw_A 97 YLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTD-GHPFGWPSNGF 173 (384)
T ss_dssp EEEEEEEEECTTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-C-CSBTTCCTTSC
T ss_pred EEEeeEEEECCCCCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccC-CCcccccCCCc
Confidence 999999999999986799999999999999999999999999999986 899999999999999876 34668988889
Q ss_pred CCCCCCceeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCc
Q 013478 221 PGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGV 300 (442)
Q Consensus 221 p~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl 300 (442)
|.++|+||+..+.++.+.++++++|+++|+++||+|+++|+|++||||||+++|++++++||+++++|++||+||++||+
T Consensus 174 p~~~g~y~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl 253 (384)
T 2ojw_A 174 PGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGV 253 (384)
T ss_dssp CSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCcccccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998887667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCceeeeeccccccccCCchhhHHHHHHhhHHHHHHHHhcc----cccccccCCCCCCCCCCCceee
Q 013478 301 VLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSW 376 (442)
Q Consensus 301 ~aTFmPKP~~g~~~GSG~H~h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~a~----~~nsYkRL~~~~eap~~~~~sW 376 (442)
.|||||||+.++|+|||||+|+||+++++++|.+.++++++||+++|+++|++| +.||||||+|++|||++.+++|
T Consensus 254 ~aTFmpKP~~~d~~GSG~H~H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsykRL~pg~ea~~~~~~sW 333 (384)
T 2ojw_A 254 IATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSA 333 (384)
T ss_dssp EEECCSCSSCSSSCCCBEEEEEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCE
T ss_pred EEEEeccccCCCCCCCeeeEEeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchhhccCCcccCCCceEEe
Confidence 999999999887899999999999886655689999999999989999999999 5699999999999999889999
Q ss_pred ccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 013478 377 GVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 426 (442)
Q Consensus 377 G~~NR~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G~~ 426 (442)
|.+||+|+||||......+++|||+|+||++|||||++|++|+||+++++
T Consensus 334 G~~NRsa~iRIp~~~~~~~~~riE~R~pd~~aNPYLa~Aailaagl~~~~ 383 (384)
T 2ojw_A 334 GVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNET 383 (384)
T ss_dssp EETCTTSSEEECHHHHHHTCSCEEECCCBTTCCHHHHHHHHHHHHTSCCC
T ss_pred ecccCCceEEeecCCCCCCCCEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999976432346799999999999999999999999999865
No 4
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=1.2e-84 Score=684.54 Aligned_cols=320 Identities=23% Similarity=0.315 Sum_probs=285.0
Q ss_pred cccCCCceeeeeeCCCCCCCC-C--CccccccCCC-CCCCCCCccEEEEeEe--eeecCCCCCCeEEEEEEeecC-CCCC
Q 013478 99 TGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTYTP-AGEP 171 (442)
Q Consensus 99 ~g~DlrGk~r~~~~p~~~~~~-l--~~~~fDGSs~-g~a~~~~sD~~L~Pd~--~~~~P~~~~~~a~Vlcd~~~~-dG~P 171 (442)
..+|+.|+.|+|.+|++.+++ + .|+.|||||+ |+..+++||++|+||+ ++++||+++++++|+||++++ ||+|
T Consensus 23 ~f~D~~G~~r~k~ip~~~~~~~~~~~G~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~a~v~cd~~~~~~g~p 102 (473)
T 3ng0_A 23 KFIDTPGIWQHCSFYYDQLDENSFTEGIPFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEW 102 (473)
T ss_dssp EEECSSSCEEEEEEEGGGCCGGGGTTCEEEETTSSTTSCCGGGCEEEEEECGGGCEECTTCSSCEEEEEEEEECTTTSSB
T ss_pred EEECCCCCEEEEEEeHHHHHHHHHhCCCccccccccccccCCCCcEEEEeecCccEECCcCCCCcEEEEEEEeECCCCCC
Confidence 345899999999999999977 4 5899999999 8888889999999995 999999987799999999999 9999
Q ss_pred CCCCHHHHHHHHHHhhhcCCc--cceEeeeeeEEEecCCC-------------CCCCCCCC---------CCCCCCCCCc
Q 013478 172 IPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNV-------------KWPLGWPV---------GAYPGPQGPY 227 (442)
Q Consensus 172 ~~~~pR~~Lk~~~~~l~~~G~--~~~~G~E~EF~L~~~~~-------------~~p~g~p~---------~~~p~~~g~y 227 (442)
++.|||++|+++++++++.|+ ++++|+|+|||||+.+. ..+.+|+. +..|.++|+|
T Consensus 103 ~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 182 (473)
T 3ng0_A 103 YNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGNLGYKPGYKQGY 182 (473)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTCGGGTTCCCTTCCCCCCCCTTCCS
T ss_pred CCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeecccccccccccccccccccccccccccccCCCCcccCCCccc
Confidence 999999999999999988766 89999999999998521 11234432 2346678899
Q ss_pred eeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCC-CCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecc
Q 013478 228 YCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 306 (442)
Q Consensus 228 y~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~-pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmP 306 (442)
|+..+.+. .++++++|+++|+++||+|+++|||++ ||||||++.|++++++||+++++|++||+||++||++|||||
T Consensus 183 ~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmp 260 (473)
T 3ng0_A 183 FPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKYVIKNVAKKYGKTVTFMP 260 (473)
T ss_dssp SCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred cccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 99888876 488999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeeeccccccc-----cC--Cchh-hHHHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCCCCcee
Q 013478 307 KPIEGDWNGAGCHTNYSTKSMR-----EE--GGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFS 375 (442)
Q Consensus 307 KP~~g~~~GSG~H~h~Sl~~~~-----~~--~G~~-~~~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~~~~~s 375 (442)
||+.++ +|||||+|+|||+.. ++ .|++ ..++||+|| |+|+++|+||++ ||||||+|++|||+ +++
T Consensus 261 KP~~~~-~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~Pt~NSYkRL~pg~~AP~--~~~ 336 (473)
T 3ng0_A 261 KPIFND-NGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGI-LKHAPALLAFTNPTTNSYKRLVPGFEAPV--NLA 336 (473)
T ss_dssp CSSTTS-CCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHHHHBBTTTBCCC--BCC
T ss_pred cccCCC-CCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCcchhhcccCCCcCcc--cee
Confidence 999996 999999999998642 11 2444 447999998 999999999985 99999999999998 999
Q ss_pred eccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 013478 376 WGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILW 424 (442)
Q Consensus 376 WG~~NR~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G 424 (442)
||.+||+++||||.....++++|||+|+||++|||||++||+|+|||+|
T Consensus 337 Wg~~NRsa~iRip~~~~~~~~~RiE~R~pd~~aNPYLa~Aa~LaAGldG 385 (473)
T 3ng0_A 337 YSQGNRSASVRIPLSGGNPKAKRLEFRCPDATSNPYLAFAAMLCAGIDG 385 (473)
T ss_dssp EEESCTTSSEEECCCSSCGGGCCEEECSCCTTSCHHHHHHHHHHHHHHH
T ss_pred eeccCCcCceeeeccCCCCCcceEEeecCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999754444578999999999999999999999999999
No 5
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=1.9e-84 Score=677.87 Aligned_cols=313 Identities=25% Similarity=0.343 Sum_probs=279.2
Q ss_pred ccCCCceeeeeeCCCCCCCCC--CccccccCCC-CCCCCCCccEEEEeEe--eeecCCCCC--CeEEEEEEeecCCCCCC
Q 013478 100 GIDMRSKSKTISKPVEHPSEL--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGG--NNILVICDTYTPAGEPI 172 (442)
Q Consensus 100 g~DlrGk~r~~~~p~~~~~~l--~~~~fDGSs~-g~a~~~~sD~~L~Pd~--~~~~P~~~~--~~a~Vlcd~~~~dG~P~ 172 (442)
.+|+.|+.|+|.+|++.++++ .|+.||||++ |+...++||++|+||+ ++++||+++ ++++|+||++++||+|+
T Consensus 25 ~~D~~G~~r~k~ip~~~~~~~~~~G~~fdgssi~g~~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~a~v~cd~~~~dG~p~ 104 (444)
T 3qaj_A 25 FTDILGTIKNVEIPVSQLGKALDNKVMFDGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARFICDIYNPDGTPF 104 (444)
T ss_dssp EECSSSCEEEEEEEGGGHHHHHTTCCEEETTTSTTSSCTTCCEEECCBCGGGCEEEHHHHHHHCEEEEEBCCBCTTSCBC
T ss_pred EECCCCCEEEEEEeHHHHHHHHhCCccccCccccCccCCCCCCEEEEEecCceEECccccCCCCeEEEEEEEECCCCCCC
Confidence 458999999999999998764 5899999999 8888899999999995 899999875 59999999999999999
Q ss_pred CCCHHHHHHHHHHhhhcCCcc-ceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHHHHHHHHHHHHH
Q 013478 173 PTNKRHRAAEIFSNSKVSAEV-PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLY 251 (442)
Q Consensus 173 ~~~pR~~Lk~~~~~l~~~G~~-~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~di~e~~~~al~~ 251 (442)
+.|||++|++++++++++|++ +++|+|+|||||+.++. |+|. ..|.++++||+..+.+. ..+++++++++|++
T Consensus 105 ~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~ 178 (444)
T 3qaj_A 105 EGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LELNDKGGYFDLAPTDL--GENCRRDIVLELEE 178 (444)
T ss_dssp SSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEESCCCCTTCCTTTSC--CTTHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcCcCCCCccccCCCcc--hHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999997643 3332 35678889998887764 24455555556899
Q ss_pred cCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeeeeccccccc---
Q 013478 252 AGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMR--- 328 (442)
Q Consensus 252 aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~h~Sl~~~~--- 328 (442)
+||+|+++|||++||||||++.|++++++||+++++|++||+||++||+.|||||||+.|+ +|||||+|+|||+..
T Consensus 179 ~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~~-~GsG~H~H~Sl~~~g~n~ 257 (444)
T 3qaj_A 179 MGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFGV-NGSGMHCNLSLFKNGVNA 257 (444)
T ss_dssp TTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECCSCSSTTS-CCCCEEEEEEEEETTEET
T ss_pred CCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEcCCcCCCC-CCCcceeeeccccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999996 999999999999731
Q ss_pred --c---CCchh-hHHHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCCCCceeeccCCCcceeeecccCCCCCccEE
Q 013478 329 --E---EGGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYL 399 (442)
Q Consensus 329 --~---~~G~~-~~~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~~~~~sWG~~NR~a~IRIp~~~~~~~~~r~ 399 (442)
+ ..|++ ..++||+|| |+|+++|+||++ ||||||+|++|||+ +++||.+||+++||||...+ +++||
T Consensus 258 f~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~pg~~AP~--~~~Wg~~NRsa~iRip~~~~--~~~Ri 332 (444)
T 3qaj_A 258 FFDENADLQLSETAKHFIAGI-VKHATSFTAVTNPTVNSYKRLVPGYEAPC--YVAWSAQNRSPLIRIPASRG--ISTRV 332 (444)
T ss_dssp TCCTTSSSSCCHHHHHHHHHH-HHTHHHHHHHHSCSSTHHHHSCTTSSSSC--BCCEESSCSSSSEECCSCCG--GGCCE
T ss_pred cCCCCcccchHHHHHHHHHHH-HHHHHHHHHHHCCCCcccccCCCCCcCCC--cceeecCCCcceEeeccCCC--CCceE
Confidence 1 12454 447999998 999999999986 89999999999999 99999999999999996433 46899
Q ss_pred EecCCCCCCCHHHHHHHHHHHhhcC
Q 013478 400 EDRRPASNMDPYVVTSLLAETTILW 424 (442)
Q Consensus 400 E~R~pda~aNPYLv~Aail~agl~G 424 (442)
|+|+||++|||||++|++|+|||+|
T Consensus 333 E~R~pd~~aNPYLa~Aa~LaAGldG 357 (444)
T 3qaj_A 333 EVRSVDPAANPYLALSVLLAAGLDG 357 (444)
T ss_dssp EECCCCTTSCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999
No 6
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=1.2e-82 Score=671.96 Aligned_cols=335 Identities=23% Similarity=0.320 Sum_probs=289.1
Q ss_pred eEEeecccCcceeeEeecccccCCCceeeeeeCCCCCCCC-C--CccccccCCC-CCCCCCCccEEEEeEe--eeecCCC
Q 013478 80 IAEYICQNNTISCWNRIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFR 153 (442)
Q Consensus 80 ~~~yi~~~~~i~~w~~idg~g~DlrGk~r~~~~p~~~~~~-l--~~~~fDGSs~-g~a~~~~sD~~L~Pd~--~~~~P~~ 153 (442)
+.++ +|+++|+. |+..++|+.|+.|+|.+|++.+++ + .|+.|||||+ |+..+++||++|+||+ ++++||+
T Consensus 17 v~~~-i~~~~I~~---V~l~f~D~~G~~r~k~ip~~~~~~~~~~~G~~fdgssi~G~~~~~~sD~~l~PD~~T~~~~Pw~ 92 (486)
T 4acf_A 17 VFKL-AKDEKVEY---VDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFR 92 (486)
T ss_dssp HHHH-HHHTTCCE---EEEEEECSSSCEEEEEEEGGGCSHHHHHTCEEEEGGGSTTSCCGGGCEEEEEECGGGCEECSSC
T ss_pred HHHH-HHHCCCcE---EEEEEECCCCcEEEEEEEHHHHHHHHHHCCCeeecccccccccCCCCCEEEEEccceeEECCcC
Confidence 3344 35566642 344456999999999999999965 3 6899999998 8998899999999997 9999999
Q ss_pred CCCeEEEEEEeecC-CCCCCCCCHHHHHHHHHHhhhcC--CccceEeeeeeEEEecCCC---------------------
Q 013478 154 GGNNILVICDTYTP-AGEPIPTNKRHRAAEIFSNSKVS--AEVPWFGIEQEYTLLQQNV--------------------- 209 (442)
Q Consensus 154 ~~~~a~Vlcd~~~~-dG~P~~~~pR~~Lk~~~~~l~~~--G~~~~~G~E~EF~L~~~~~--------------------- 209 (442)
++.++.|+|+++++ +|+|++.|||++||++++++++. |+++++|+|+|||||+...
T Consensus 93 ~~~~~~v~~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 172 (486)
T 4acf_A 93 AAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNT 172 (486)
T ss_dssp SSCEEEEEEEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGT
T ss_pred CCccEEEEEEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccCCccccccCC
Confidence 98889999999986 89999999999999999999875 5589999999999997421
Q ss_pred ---CCCCCCCCCCCC-CCCCCceeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCCC-CceEEEeCCChhHHHHHHH
Q 013478 210 ---KWPLGWPVGAYP-GPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMP-GQWEYQVGPSVGIDAGDHI 284 (442)
Q Consensus 210 ---~~p~g~p~~~~p-~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~p-GQ~Ei~l~p~~~i~aaD~l 284 (442)
..+.++|..+++ ..+++||...+.+. .++++++++++|+++||+|+++|+|+|| |||||++.|++++++||++
T Consensus 173 ~~~~~~~g~p~~~~~~~~~~~y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~aAD~~ 250 (486)
T 4acf_A 173 GAATEADGSPNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDM 250 (486)
T ss_dssp TCSBCTTSCBCCCCCBCTTCCSSBCTTTSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHH
T ss_pred CCcccCCCCCCCCcccccCCccccCCcchh--HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhhhhhHH
Confidence 012244444443 34556666666665 4899999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeeeeccccccc-----cC---Cchh-hHHHHHHhhHHHHHHHHhccc
Q 013478 285 WCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMR-----EE---GGYE-TIKKAILNLSLRHKEHISAYG 355 (442)
Q Consensus 285 ~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~h~Sl~~~~-----~~---~G~~-~~~~~iaGL~L~H~~al~a~~ 355 (442)
+++|++||+||++||+.|||||||+.++ +|||||+|+|||+.. ++ .|++ ..++||+|| |+|+++++||+
T Consensus 251 ~~~k~~vk~vA~~~G~~aTFmpKP~~~~-~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~ 328 (486)
T 4acf_A 251 QLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFT 328 (486)
T ss_dssp HHHHHHHHHHHHHTTCEEECCSCSSTTS-CCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEeeccccCC-CcccceeeeeeccCCCccccccccccccchHHHHHHHHH-HHhhhcceeee
Confidence 9999999999999999999999999995 999999999999853 12 2444 457999998 99999999997
Q ss_pred c---cccccCCCCCCCCCCCceeeccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 013478 356 E---GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILW 424 (442)
Q Consensus 356 ~---nsYkRL~~~~eap~~~~~sWG~~NR~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G 424 (442)
+ ||||||+|++|||+ +++||.+||+|+||||.....++++|||+|+||++|||||++|++|+|||+|
T Consensus 329 ~PtvNSYkRl~pg~~AP~--~~~wg~~NRsa~iRip~~~~~~~~~riE~R~pd~~aNPYLalAailaAGldG 398 (486)
T 4acf_A 329 NPTVNSYKRLVPGYEAPI--NLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDG 398 (486)
T ss_dssp SCSTTHHHHSSTTSSSCS--BSCEEETCTTSSEEECCCTTCTTTCCEEECCCCSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCcchhccCCCCcCCc--eeEEeccCCCcceEecccCCCCccceeeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 5 99999999999999 9999999999999999876656678999999999999999999999999999
No 7
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-82 Score=662.82 Aligned_cols=307 Identities=18% Similarity=0.154 Sum_probs=274.0
Q ss_pred ccCCCceeeeeeCCCCCCCCC--CccccccCC--C-CCCC-------CCCccEEEEeEe--eeecCCCCC----CeEEEE
Q 013478 100 GIDMRSKSKTISKPVEHPSEL--PKWNYDGSS--T-GQAP-------GEDSEVILYPQA--IFKDPFRGG----NNILVI 161 (442)
Q Consensus 100 g~DlrGk~r~~~~p~~~~~~l--~~~~fDGSs--~-g~a~-------~~~sD~~L~Pd~--~~~~P~~~~----~~a~Vl 161 (442)
.+|+.|++|+|.+|++.++++ .|+.||+|. + ++.. +++||++|+||+ ++++||+++ ++++|+
T Consensus 14 ~~D~~G~~r~k~vp~~~~~~~~~~G~~f~~s~~~~~~~~~~~~~~~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~~~a~v~ 93 (443)
T 4hpp_A 14 TTDLAGITRGRSLPLATLEEQLASGCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDPNSRVRVEQGPDAAAPALDYLH 93 (443)
T ss_dssp EECTTSCEEEEEEEGGGHHHHHTTCEEECGGGGGCCTTSCCCTTCSCSSSCCEEEEECGGGCEEECCCSSTTSCCEEEEE
T ss_pred EECCCCCEEEEEEEHHHHHHHHhCCcccCchhheeeccCccccccCCCCCCCEEEEEcccceEECCcccccCCCCeEEEE
Confidence 458999999999999998764 579999863 3 2222 245999999995 999999983 599999
Q ss_pred EEeecCCCCCCCCCHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHHH
Q 013478 162 CDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDI 241 (442)
Q Consensus 162 cd~~~~dG~P~~~~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~di 241 (442)
||++++||+|++.|||++|++++++++++|+++++|+|+|||||+. .|.++++||+..+.+. .+++
T Consensus 94 cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y~~~~~~~--~~~~ 159 (443)
T 4hpp_A 94 GNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAFSLQAQRA--AGQF 159 (443)
T ss_dssp EEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTTCHHHHHH--TTTH
T ss_pred EEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccCCCCcccc--hHHH
Confidence 9999999999999999999999999999999999999999999962 3557789999887665 5788
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeeee
Q 013478 242 ADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTN 321 (442)
Q Consensus 242 ~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~h 321 (442)
+++|+++|+++||+|+++|||++||||||++.|++++++||+++++|++||+||++||++|||||||+.++ +|||||+|
T Consensus 160 ~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~~-~GsG~H~h 238 (443)
T 4hpp_A 160 PGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLPAPGA-VTNGVHLH 238 (443)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSSSTTC-CCCCEEEE
T ss_pred HHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCCC-Ccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 99999999
Q ss_pred ccccccc------c---CCchhhH-HHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCCCCceeeccCCCcceeeec
Q 013478 322 YSTKSMR------E---EGGYETI-KKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVANRGCSIRVG 388 (442)
Q Consensus 322 ~Sl~~~~------~---~~G~~~~-~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~~~~~sWG~~NR~a~IRIp 388 (442)
+|||+.. + ++|++.+ ++||+|| |+|+++|+||++ ||||||+|++|||+ +++||.+||+++||||
T Consensus 239 ~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~P~~NSYkRL~pg~~AP~--~~~WG~~NRsa~iRip 315 (443)
T 4hpp_A 239 LSLQHADGSPLLYEPGRPNDLSELGEHWAAGV-LAHLPALCALTAPTAASYLRLKPHHWSAA--YACLGLRNREAALRIC 315 (443)
T ss_dssp EEEEETTSCBSSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSGGGHHHHSCSTTCCC--BCCEESSCTTSSEEEE
T ss_pred eeeecCCCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCCcchhccCCCCcCCC--cceeccCCCceeEEec
Confidence 9999742 1 1245544 7999998 999999999986 89999999999998 9999999999999999
Q ss_pred ccC---CC--CCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 013478 389 RET---EK--QGKGYLEDRRPASNMDPYVVTSLLAETTILW 424 (442)
Q Consensus 389 ~~~---~~--~~~~r~E~R~pda~aNPYLv~Aail~agl~G 424 (442)
... +. .+++|||+|+||++|||||++|++|+|||+|
T Consensus 316 ~~~~~~~~~~~~~~riE~R~pd~~aNPYLa~AaiLaAGl~G 356 (443)
T 4hpp_A 316 PVVSVGGKPLGKQYNLEFRPMDATTCPHLAMAAVLIAGRLG 356 (443)
T ss_dssp CCCCSSSCCSSTTCEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred cccccCCCccccccEEEEcCCCCCcCHHHHHHHHHHHHHHH
Confidence 875 22 2568999999999999999999999999999
No 8
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=5.7e-82 Score=663.84 Aligned_cols=322 Identities=22% Similarity=0.333 Sum_probs=286.3
Q ss_pred ecccccCCCceeeeeeCCCCCCCC--C-CccccccCCC-CCCCCCCccEEEEeEe--eeecCCCCCCeEEEEEEeecC-C
Q 013478 96 IGGTGIDMRSKSKTISKPVEHPSE--L-PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTYTP-A 168 (442)
Q Consensus 96 idg~g~DlrGk~r~~~~p~~~~~~--l-~~~~fDGSs~-g~a~~~~sD~~L~Pd~--~~~~P~~~~~~a~Vlcd~~~~-d 168 (442)
|+..++|++|++|+|.+|++.+++ + .|++|||||+ |+...++||++|+||+ ++++||+++++++|+||++++ +
T Consensus 17 v~~~~~D~~G~~r~k~vp~~~~~~~~~~~g~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~~d~~~~~~ 96 (468)
T 1f52_A 17 VDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGT 96 (468)
T ss_dssp EEEEEECTTSCEEEEEEEGGGCCHHHHHHCEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSCSSCEEEEEEEEECTTT
T ss_pred EEEEEECCCCCEEEEEEEHHHHHHHHhhCceeeccccccccccCCCCCEEEEEecCCcEEccccCCCceEEEEEEEeCCC
Confidence 445566999999999999999987 3 6899999998 8888889999999995 899999976799999999999 7
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCc--cceEeeeeeEEEecCCC-----C--------CCCCCCC---------CCCCCCC
Q 013478 169 GEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNV-----K--------WPLGWPV---------GAYPGPQ 224 (442)
Q Consensus 169 G~P~~~~pR~~Lk~~~~~l~~~G~--~~~~G~E~EF~L~~~~~-----~--------~p~g~p~---------~~~p~~~ 224 (442)
|+|++.|||++|+++++++++.|+ ++++|+|+|||||+.+. + ...+|+. +..|..+
T Consensus 97 G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (468)
T 1f52_A 97 LQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVK 176 (468)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTT
T ss_pred CCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCccccccccccccccCCCccccccCCCCCCCCC
Confidence 999999999999999999999999 89999999999998531 0 0123432 2247788
Q ss_pred CCceeecccChhHHHHHHHHHHHHHHHcCCceeeecCCCCCC-ceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEE
Q 013478 225 GPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG-QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 303 (442)
Q Consensus 225 g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h~E~~pG-Q~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aT 303 (442)
++||+..+.+. .++++++|+++|+++||+|++.|||++|| ||||++.|++++++||+++++|++||+||++||+.||
T Consensus 177 ~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~hGl~at 254 (468)
T 1f52_A 177 GGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTAT 254 (468)
T ss_dssp CCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 99999998876 58999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCceeeeecccccccc-----C--Cchh-hHHHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCCCC
Q 013478 304 LDPKPIEGDWNGAGCHTNYSTKSMRE-----E--GGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASID 372 (442)
Q Consensus 304 FmPKP~~g~~~GSG~H~h~Sl~~~~~-----~--~G~~-~~~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~~~ 372 (442)
|||||+.|+ +|||||+|+||++... + .|++ ..++||+|| |+|+++|+||++ ||||||+|++|||+
T Consensus 255 FmpKP~~g~-~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGl-l~h~~~l~a~~ap~~NSYkRL~pg~eAP~-- 330 (468)
T 1f52_A 255 FMPKPMFGD-NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAPV-- 330 (468)
T ss_dssp CCSCSSTTS-CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCCC--
T ss_pred EeCCCCCCC-CCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHH-HHHHHHhHhHhcCCccchhccCCCCcCcC--
Confidence 999999996 9999999999997421 1 2333 457999998 999999999975 99999999999999
Q ss_pred ceeeccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 013478 373 SFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILW 424 (442)
Q Consensus 373 ~~sWG~~NR~a~IRIp~~~~~~~~~r~E~R~pda~aNPYLv~Aail~agl~G 424 (442)
+++||.+||+++||||.... ++.+|||+|+||++|||||++|++|+|||+|
T Consensus 331 ~i~wg~~NRsa~iRiP~~~~-~~~~riE~R~pd~~aNPYLalaailaagL~G 381 (468)
T 1f52_A 331 MLAYSARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDG 381 (468)
T ss_dssp EEEEESSCTTEEEECCCCSC-GGGCCEEECCCCTTSCHHHHHHHHHHHHHHH
T ss_pred cceeccCCcccceeeCCCCC-CCCCEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999997422 2468999999999999999999999999999
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=1.6e-73 Score=592.33 Aligned_cols=296 Identities=16% Similarity=0.198 Sum_probs=250.3
Q ss_pred CCCceeeeeeCCCCCCCCC-CccccccCC-C-CC-CCCCCccEEEEeEe--eeecCC-CCCCeEEEEEEeecCCCCCCCC
Q 013478 102 DMRSKSKTISKPVEHPSEL-PKWNYDGSS-T-GQ-APGEDSEVILYPQA--IFKDPF-RGGNNILVICDTYTPAGEPIPT 174 (442)
Q Consensus 102 DlrGk~r~~~~p~~~~~~l-~~~~fDGSs-~-g~-a~~~~sD~~L~Pd~--~~~~P~-~~~~~a~Vlcd~~~~dG~P~~~ 174 (442)
|+.|++|+|.+|++.++++ .+|+||||+ + ++ ..+.+||++|+||+ ++++|| .+ ++++|+|| ||+|++.
T Consensus 23 D~~G~~r~k~ip~~~~~~~~~g~~~~gs~~~~~~~~~~~~sD~~l~PD~~T~~~~Pw~~~-~~a~v~cd----dG~P~~~ 97 (421)
T 2j9i_A 23 DAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAAAA-ATAAVICD----GGAAAAA 97 (421)
T ss_dssp CSSSCEEEEEEEGGGCCTTHHHHCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTSSS-SEEEEEEE----EESSCSC
T ss_pred CCCCCEEEEEEEHHHHHHhhcCCeeecccCcccccccCCCCCEEEEEecCceEEcCcCCC-CeEEEEcC----CCCCCCC
Confidence 6668999999999988555 469999986 3 44 45667999999996 899999 55 59999999 7999999
Q ss_pred CHHHHHHHHHHhhhcCCc--cceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHHHHHHHHHHHHHc
Q 013478 175 NKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYA 252 (442)
Q Consensus 175 ~pR~~Lk~~~~~l~~~G~--~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~di~e~~~~al~~a 252 (442)
|||++|+++++++++.|+ ++++|+|+|||||+.+.. |. +.| .||...+.+. .++++++|+++|+ +
T Consensus 98 ~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~----~~--~~p----~y~~~~~~~~--~~~~~~~i~~~l~-~ 164 (421)
T 2j9i_A 98 SPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEV----IN--SKT----ISFPASTTAA--AADQPQEAAAGGA-A 164 (421)
T ss_dssp CHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEE----EE--CSS----CEEEECCCTT--CTTGGGSCCTTCC-C
T ss_pred ChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCC----CC--CCC----CcCCCCcccc--hhHHHHHHHHHHh-C
Confidence 999999999999999999 999999999999987631 10 111 2554444443 3566788888899 9
Q ss_pred CCceeeecCCCCCCceEEEeCCCh-hHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeeeeccccccc-c-
Q 013478 253 GINISGTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMR-E- 329 (442)
Q Consensus 253 GI~i~~~h~E~~pGQ~Ei~l~p~~-~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~h~Sl~~~~-~- 329 (442)
||+|+++|||++||||||++.|++ ++++||+++++|++||+||++||+.||||||| + |+|||| +|+||++++ +
T Consensus 165 Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~atFmpKP--~-~~GSG~-~h~Sl~~~~~~G 240 (421)
T 2j9i_A 165 GAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAA--A-AAAAGA-GSHSIWDVGAAG 240 (421)
T ss_dssp SCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCTTS--S-TTSCCC-BCCEEECEEETT
T ss_pred CCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCc--C-CCCCce-EEEeccccCCCC
Confidence 999999999999999999999999 99999999999999999999999999999999 6 799999 999999743 1
Q ss_pred ------C--Cchh-hHHHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCC-CCceeeccCCCcceeeecccCCCCCc
Q 013478 330 ------E--GGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETAS-IDSFSWGVANRGCSIRVGRETEKQGK 396 (442)
Q Consensus 330 ------~--~G~~-~~~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~-~~~~sWG~~NR~a~IRIp~~~~~~~~ 396 (442)
+ .|++ ..++||+|| |+|+++|++|++ |||||+. |+|. +.+++||.+||+++||||.. ..+++
T Consensus 241 ~nlf~~~~~~~ls~~~~~~iaGi-l~h~~~l~a~~~p~~NSYk~~~---~ap~~~~~~~wG~~NRsa~iRip~~-~~~~~ 315 (421)
T 2j9i_A 241 TNAFAGASGARATLTGAKWLAGL-LAAAAAAAAAAAAAAAAAAAAA---AGAAAAAATAWGAAAAACALNIAAA-AAAKG 315 (421)
T ss_dssp EESSCSSSGGGCCHHHHHHHHHH-HHHHHHHHHHHTCSHHHHHHTS---SSTTCCCEEEEESSCTTEEEEEECC-SSGGG
T ss_pred ceeecCCCCccccHHHHHHHHHH-HHHHHHHHHHhCCCccccCCCC---CCCcCeeeeeeecCCCccceeeccc-CCCCC
Confidence 1 1333 457999998 999999999976 8999654 5554 11449999999999999976 22346
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 013478 397 GYLEDRRPASNMDPYVVTSLLAETTILW 424 (442)
Q Consensus 397 ~r~E~R~pda~aNPYLv~Aail~agl~G 424 (442)
+|||+|+||++|||||++|++|+|||+|
T Consensus 316 ~riE~R~pd~~aNPYLa~aailaagl~G 343 (421)
T 2j9i_A 316 AQIENKAGAAAANPYLVLAATVAAGLDG 343 (421)
T ss_dssp CEEEECSCBTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCChHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=1.8e-56 Score=481.74 Aligned_cols=281 Identities=18% Similarity=0.199 Sum_probs=210.6
Q ss_pred cccCCC---CCCCCCCccEEEEeEe---eeecCCCCCCeEEEEEEeecCCCC------CCCCCHHHHHHHHHHhhhcCCc
Q 013478 125 YDGSST---GQAPGEDSEVILYPQA---IFKDPFRGGNNILVICDTYTPAGE------PIPTNKRHRAAEIFSNSKVSAE 192 (442)
Q Consensus 125 fDGSs~---g~a~~~~sD~~L~Pd~---~~~~P~~~~~~a~Vlcd~~~~dG~------P~~~~pR~~Lk~~~~~l~~~G~ 192 (442)
-||||+ |.....++|+++.||+ .|++| ++..+.|.+++.+|+ |+..|||++++++++.++..|.
T Consensus 128 ~DgSS~p~gG~r~t~earg~~~~D~ts~afi~~----~TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G~ 203 (729)
T 3o6x_A 128 PDASSFPNGGIRNTFEARGYTAWDGSSPAFVVD----TTLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFDK 203 (729)
T ss_dssp --------------------CCBCSSSCCEEET----TEEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CccccCCCccchhhhhccCceecCCCCCeEEeC----CeEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcCC
Confidence 399998 7888899999999996 78887 499999999998886 5778999999999999999997
Q ss_pred -----cceEeeeeeEEEecCCC--CCCC----CCCCCCCCCCCC-----CceeecccChhHHHHHHHHHHHHHHHcCCce
Q 013478 193 -----VPWFGIEQEYTLLQQNV--KWPL----GWPVGAYPGPQG-----PYYCGAGADKSFGRDIADAHYKACLYAGINI 256 (442)
Q Consensus 193 -----~~~~G~E~EF~L~~~~~--~~p~----g~p~~~~p~~~g-----~yy~~~~~~~~~~~di~e~~~~al~~aGI~i 256 (442)
.+++|+|+|||||++.. .++. |+...|.+.++| +||...+ +. ..++++++.++|+++||+|
T Consensus 204 d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~kgq~l~d~Yf~~~p-d~--~~~~~~di~~~L~~~GI~v 280 (729)
T 3o6x_A 204 NITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIP-PR--VTAFMKELEIECHKLGIPV 280 (729)
T ss_dssp CCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC--------------CC-HH--HHHHHHHHHHHHHHHTCCE
T ss_pred CCccceEEEEeccEEEEEecchhccCcccccccccccCCCCCCCCCCCCccCCCCc-hh--HHHHHHHHHHHHHHCCCCe
Confidence 69999999999998642 1111 111123333455 7887665 43 4666777777799999999
Q ss_pred eeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeeeecccccccc------C
Q 013478 257 SGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE------E 330 (442)
Q Consensus 257 ~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~h~Sl~~~~~------~ 330 (442)
++.|+|++||||||++.|++++++||+++++|++||+||++||+.|||||||+.| ++|||||+|+|||+..+ +
T Consensus 281 e~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~g-~nGSG~HvH~SL~~~~G~NLF~~~ 359 (729)
T 3o6x_A 281 KTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNG-VNGSGKHNNWSLCTDTGINLFAPG 359 (729)
T ss_dssp EEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSSTT-SCCCBEEEEEEEEETTCCCSSCCC
T ss_pred EEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC-CCCCcceeeccccCCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 59999999999997411 1
Q ss_pred Cc------h-hhHHHHHHhhHHHHHHHHhcccc---cccccCCCCCCCCCCCc----------------ee---------
Q 013478 331 GG------Y-ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDS----------------FS--------- 375 (442)
Q Consensus 331 ~G------~-~~~~~~iaGL~L~H~~al~a~~~---nsYkRL~~~~eap~~~~----------------~s--------- 375 (442)
++ + ....+||+|+ ++|+++|+|+++ ||| || |++|||+ . +.
T Consensus 360 d~~~~~~~~s~~~~~fIaGV-LkHa~aL~A~~aPt~NSY-RL-~g~EAP~--~iisi~lG~~l~~vl~~i~~~~~g~~~~ 434 (729)
T 3o6x_A 360 KNPKGNMLFLTFLVNVLMMV-HKNQDLLRASIMSAGNSH-RL-GANEAPP--AILSIFLGSQLSATLDEIVRQVTNSKMT 434 (729)
T ss_dssp SSTTTCHHHHHHHHHHHHHH-HHTHHHHHHHSCCHHHHT-TS-SSSSCCC--SCCCEECCHHHHHHHHCC----------
T ss_pred CCccchhhHHHHHHHHHHHH-HHhHHHHHHHhCCCcccc-cc-CCCcCCc--hhhhhhhhHHHHHHHHHHHhhccCCCCC
Confidence 11 1 1236899998 999999999986 899 99 9999998 4 23
Q ss_pred --------ecc------------CCCcceeeecccCCCCCccEEEecCCCCCCC---HHHHHHHHHHHhhcCC
Q 013478 376 --------WGV------------ANRGCSIRVGRETEKQGKGYLEDRRPASNMD---PYVVTSLLAETTILWE 425 (442)
Q Consensus 376 --------WG~------------~NR~a~IRIp~~~~~~~~~r~E~R~pda~aN---PYLv~Aail~agl~G~ 425 (442)
||+ +||++++|+.. .|||+|.|++++| ||++++++++++|+|.
T Consensus 435 ~~~~~~~~~Gv~~lP~~~~d~~drNRTspfaftG-------nrfEfR~~Gss~n~a~P~l~lnaivA~~L~gi 500 (729)
T 3o6x_A 435 PEEKTTLKLGIGRIPEILLDTTDRNRTSPFAFTG-------NRFEFRAAGSSANCAAAMIAINAAMANQLNEF 500 (729)
T ss_dssp -----------------------CCCSSSSCBCS-------SSEEETTSBSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcccCCCCccCcCccccCCCccccC-------CeeEEecCCcccchhhHHHHHHHHHHHHHHHH
Confidence 454 99999999872 5899999999999 9999999999999993
No 11
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=98.09 E-value=3.8e-05 Score=77.89 Aligned_cols=131 Identities=14% Similarity=0.050 Sum_probs=86.5
Q ss_pred ccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHHHHHHHHHHHHHcCCce--eeecCCCCCCceE
Q 013478 192 EVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINI--SGTNGEVMPGQWE 269 (442)
Q Consensus 192 ~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i--~~~h~E~~pGQ~E 269 (442)
-.+.+|+|.||++++.+++ .+.+. . .++++. .+=.+ ..+..|..-+|.|
T Consensus 10 ~~~~~GiE~E~~~Vd~~~g---------~~~~~---------~----~~~l~~-------~~~~~~~~~it~E~~~~qlE 60 (372)
T 1r8g_A 10 EPFTLGIELEMQVVNPPGY---------DLSQD---------S----SMLIDA-------VKNKITAGEVKHDITESMLE 60 (372)
T ss_dssp CTTCEEEEEEEEEEETTTT---------EECSC---------C----HHHHTT-------TSSSCSSSEEEECSSSSEEE
T ss_pred CCCceEEEEEEeeECCCCC---------CcCcc---------H----HHHHHh-------chhcccCCcccchhhccEEE
Confidence 3569999999999998632 22111 0 233322 22111 4578899999999
Q ss_pred EEeCCCh-hHHHHHHHHHHHHHHHHHHHHcCcEE---Eeccc-----------CC----CCC-------CCCceeeeecc
Q 013478 270 YQVGPSV-GIDAGDHIWCSRYLLERITEQAGVVL---SLDPK-----------PI----EGD-------WNGAGCHTNYS 323 (442)
Q Consensus 270 i~l~p~~-~i~aaD~l~~~R~iik~vA~~~Gl~a---TFmPK-----------P~----~g~-------~~GSG~H~h~S 323 (442)
+...|+. .-++.+.+--.+..++++|+++|... ++.|+ |. ... ..=+|+|+|++
T Consensus 61 l~t~p~~~~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g~~~~~~~i~g~hvhv~ 140 (372)
T 1r8g_A 61 LATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVG 140 (372)
T ss_dssp EECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeEEEEeC
Confidence 9999985 55599999999999999999988654 44443 21 000 12399999999
Q ss_pred ccccccCCchhhHHHHHHhhHHHHHHHHhcccccc
Q 013478 324 TKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 358 (442)
Q Consensus 324 l~~~~~~~G~~~~~~~iaGL~L~H~~al~a~~~ns 358 (442)
+.+. . ..-..+..+ +.+.|.+.|+++||
T Consensus 141 ~~~~-----~-~~~~~~~~~-~~~~p~l~aL~anS 168 (372)
T 1r8g_A 141 CASG-----D-DAIYLLHGL-SRFVPHFIALSAAS 168 (372)
T ss_dssp CSSH-----H-HHHHHHHHH-HTTHHHHHHHHCCB
T ss_pred CCCH-----H-HHHHHHHHH-HHHHHHHHHHHhCC
Confidence 9652 1 122334454 77889988887654
No 12
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=97.96 E-value=0.00013 Score=76.04 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHHHHHHHHHHHHHcCC
Q 013478 175 NKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGI 254 (442)
Q Consensus 175 ~pR~~Lk~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI 254 (442)
-.+..|.+.++.-...+-.+.+|+|.||++++.++. .|. +|. ...++++.+-. ..|.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~---------~~~---~~~--------~~~~lL~~l~~---~~g~ 72 (449)
T 2gwd_A 16 LTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTL---------RPM---KYD--------QIAELLNSIAE---RFEW 72 (449)
T ss_dssp CCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTC---------CBC---CHH--------HHHHHHHHHHH---HHTC
T ss_pred cCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCC---------CCC---ChH--------HHHHHHHHHHH---hhcc
Confidence 445556665554323355789999999999998632 121 121 12455555322 2332
Q ss_pred -------ce-------eeecCCCCCCceEEEeCCChh-HHHHHHHHHHHHHHHHHHHHcCcEE---Eeccc---------
Q 013478 255 -------NI-------SGTNGEVMPGQWEYQVGPSVG-IDAGDHIWCSRYLLERITEQAGVVL---SLDPK--------- 307 (442)
Q Consensus 255 -------~i-------~~~h~E~~pGQ~Ei~l~p~~~-i~aaD~l~~~R~iik~vA~~~Gl~a---TFmPK--------- 307 (442)
++ ..+..|.+ +|+|++..|+.. -++.+++-..+..++++|+++|+.. .+.|+
T Consensus 73 ~~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~ 151 (449)
T 2gwd_A 73 EKVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTM 151 (449)
T ss_dssp EEEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCC
T ss_pred CccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCC
Confidence 11 11666775 999999999864 4689999999999999999999664 33443
Q ss_pred --CC----------CCCCC-------CceeeeeccccccccCCchhhHHHHHHhhHHHHHHHHhcccccc
Q 013478 308 --PI----------EGDWN-------GAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 358 (442)
Q Consensus 308 --P~----------~g~~~-------GSG~H~h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~a~~~ns 358 (442)
|. .| +. -+|+|+|+++.+. ..+-..+..+ +...|.+.|+++||
T Consensus 152 ~~~RY~~m~~~~~~~g-~~g~~mm~~~~g~qVhl~~~~~------~~~~~~~~~~-~~~~P~llALsAnS 213 (449)
T 2gwd_A 152 PKGRYDIMRNYMPKVG-SLGLDMMLRTCTVQVNLDFSSE------ADMIRKFRAG-LALQPIATALFANS 213 (449)
T ss_dssp SCHHHHHHHHHGGGTC-SSHHHHHHHBCEEEEEECCSSH------HHHHHHHHHH-HHHHHHHHHHHCCB
T ss_pred CchHHHHHHHHHHHhc-hhHHHHhhcceeeEEEecCCCH------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 21 13 23 4889999999642 1122334454 77889989887654
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=94.29 E-value=0.15 Score=56.28 Aligned_cols=98 Identities=14% Similarity=-0.006 Sum_probs=63.9
Q ss_pred eecCCCCCCceEEEeCCCh-hHHHHHHHHHHHHHHHHHH-HHcCcEEEecc-c------CCCCCC---------------
Q 013478 258 GTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERIT-EQAGVVLSLDP-K------PIEGDW--------------- 313 (442)
Q Consensus 258 ~~h~E~~pGQ~Ei~l~p~~-~i~aaD~l~~~R~iik~vA-~~~Gl~aTFmP-K------P~~g~~--------------- 313 (442)
.+.+|..-.|.|+...+|. .-++-++|-..|..+.+.+ ....+-+.=|| . |+.. |
T Consensus 54 ~i~~d~~es~lE~~Tpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lw~~smp~~l~~~~i~ia~-~~~~~~~~Yr~~l~~r 132 (750)
T 3ln6_A 54 YIQTDYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSINHDEYLWPLSMPPKVREEDIQIAQ-LEDAFEYDYRKYLEKT 132 (750)
T ss_dssp SEEESSBSSEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCSSCCTTTCCBCC-CSCHHHHHHHHHHHHH
T ss_pred CccchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeecCCCCCCCCCCCccc-CCCCCcHHHHHHHHHH
Confidence 5778999999999999985 5568888888888888875 43333222222 1 3331 1
Q ss_pred ------CCceeeeeccccccc--------cCCchhhHH-----HHHHhhHHHHHHHHhccccc
Q 013478 314 ------NGAGCHTNYSTKSMR--------EEGGYETIK-----KAILNLSLRHKEHISAYGEG 357 (442)
Q Consensus 314 ------~GSG~H~h~Sl~~~~--------~~~G~~~~~-----~~iaGL~L~H~~al~a~~~n 357 (442)
.=+|+|+|||+-+.. +......+. ..+.++ +++.++|.++..+
T Consensus 133 yg~~~q~i~G~Hvn~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~-~r~~w~l~~L~ga 194 (750)
T 3ln6_A 133 YGKLIQSISGIHYNLGLGQELLTSLFELSQADNAIDFQNQLYMKLSQNF-LRYRWLLTYLYGA 194 (750)
T ss_dssp HCTGGGGCCCEEEEEEECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHTCC
T ss_pred hChhhceeeeEEEEecCChHHHHHHhhccccchHHHHhhhHHHHHHHHH-HhHHHHHHHHhhC
Confidence 137999999997631 001112222 236676 8999999998753
No 14
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=87.18 E-value=1.3 Score=49.04 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=62.9
Q ss_pred eecCCCCCCceEEEeCCCh-hHHHHHHHHHHHHHHHHHH-HHcCcEEEecc----c----CCCCCCC-------------
Q 013478 258 GTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERIT-EQAGVVLSLDP----K----PIEGDWN------------- 314 (442)
Q Consensus 258 ~~h~E~~pGQ~Ei~l~p~~-~i~aaD~l~~~R~iik~vA-~~~Gl~aTFmP----K----P~~g~~~------------- 314 (442)
.+.+|..-+|.|+...++. .-++-++|-..|..+.+.+ ....+-+.=|| . |+.. |.
T Consensus 53 ~i~td~ses~lE~iTpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lwp~smp~~l~~~~~ip~a~-~~~~~~~~Yr~~L~~ 131 (757)
T 3ln7_A 53 YIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAEEQIRVAQ-LDNPEDVAYREYLVK 131 (757)
T ss_dssp SEECSSSTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCTTEECCCSSSCSBCCC---CCCCC-CSSHHHHHHHHHHHH
T ss_pred CCCchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCCCCCCCccc-cCCCccHHHHHHHHH
Confidence 5778999999999999985 6668888888888888775 33333222222 1 3432 21
Q ss_pred --------Cceeeeeccccccc--------cC-CchhhHH-----HHHHhhHHHHHHHHhcccc
Q 013478 315 --------GAGCHTNYSTKSMR--------EE-GGYETIK-----KAILNLSLRHKEHISAYGE 356 (442)
Q Consensus 315 --------GSG~H~h~Sl~~~~--------~~-~G~~~~~-----~~iaGL~L~H~~al~a~~~ 356 (442)
=+|+|+|||+-+.. ++ .....+. ..+.++ ++|.++|.++..
T Consensus 132 ryG~~~q~i~GiH~n~s~~~~~~~~l~~~~~~~~~~~~~~~~~Y~~l~r~~-~r~~wll~yL~g 194 (757)
T 3ln7_A 132 IYGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNF-LRYQWILLYLLA 194 (757)
T ss_dssp HHCSHHHHCCCCEEEEEECHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH-HHHHHHHHHHTC
T ss_pred HhchhhceeeeEEEEEecChHHHHHHhhhcccchhHHHHHhHHHHHHHHhh-HhHHHHHHHHhh
Confidence 27899999997631 01 1122222 235666 889999998864
No 15
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=75.64 E-value=4.1 Score=43.01 Aligned_cols=38 Identities=5% Similarity=-0.193 Sum_probs=30.1
Q ss_pred eecCCCCCCceEEEeCCCh-hHHHHHHHHHHHHHHHHHH
Q 013478 258 GTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERIT 295 (442)
Q Consensus 258 ~~h~E~~pGQ~Ei~l~p~~-~i~aaD~l~~~R~iik~vA 295 (442)
.+..|..-.|.|+...++. .-++-+.|-..+..+.+.+
T Consensus 56 ~IttDfsEsqlE~iTpv~~s~~eal~~L~~l~~~v~~~l 94 (518)
T 1va6_A 56 WITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNM 94 (518)
T ss_dssp SEEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSS
T ss_pred CcCCCcchhheeecCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 4677888899999999974 4457888888887777777
No 16
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=69.61 E-value=27 Score=34.36 Aligned_cols=126 Identities=13% Similarity=0.209 Sum_probs=80.6
Q ss_pred HHHcC-CceeeecCCCC----CCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCceeeeecc
Q 013478 249 CLYAG-INISGTNGEVM----PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYS 323 (442)
Q Consensus 249 l~~aG-I~i~~~h~E~~----pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GSG~H~h~S 323 (442)
+-++| |++...+.-.. |.+.=|.|.|.+++.-.|-+-.++. +|++-++.|+. +| ||- . -|.|+|+-+-
T Consensus 111 ~aq~~~lE~H~w~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA~~-~r~~L~~lGL~-~f-~KT-S---GgkGlHV~vP 183 (309)
T 2fao_A 111 AVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQL-SLTLLDELGLR-AF-LKT-S---GGKGMHLLVP 183 (309)
T ss_dssp HHHTTEEEEEECSSCTTCTTSCSEEEEEEEECTTSCHHHHHHHHHH-HHHHHHHHTCC-CE-EEE-C---SSSSEEEEEE
T ss_pred HHHhCcEEeeCCcccCCCCCCCCEEEEECCCCcCCCHHHHHHHHHH-HHHHHHHcCCc-ee-eEc-c---CCCeeEEEEE
Confidence 34555 67666555443 8999999999998887777777766 89999999985 46 772 1 3789999999
Q ss_pred ccccccCCchhhHHHHHHhhHHHHHHHHh--cccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 013478 324 TKSMREEGGYETIKKAILNLSLRHKEHIS--AYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 390 (442)
Q Consensus 324 l~~~~~~~G~~~~~~~iaGL~L~H~~al~--a~~~nsYkRL~~~~eap~~~~~sWG~~NR~a~IRIp~~ 390 (442)
|... -+....+.|...+ -+++..-. .|+...-|...++. . ++-|-.++|+..+--|.+
T Consensus 184 l~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~gk---I--fiDy~qN~~g~T~vapYS 243 (309)
T 2fao_A 184 LERR---HGWDEVKDFAQAI-SQHLARLMPERFSAVSGPRNRVGK---I--FVDYLRNSRGASTVAAYS 243 (309)
T ss_dssp CCSC---SCHHHHHHHHHHH-HHHHHHHCTTTEECSCSGGGSTTS---E--EEECGGGSTTCCEECTTC
T ss_pred cCCC---CCHHHHHHHHHHH-HHHHHHhCcceeehhhhHhhCCCC---E--EEeCccCCCCCeEEccCC
Confidence 9652 2344455555554 34444332 24433333333332 2 777777777776655544
No 17
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=66.08 E-value=11 Score=39.82 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=62.3
Q ss_pred eeecCCCCCCceEEEeCCCh-hHHHHHHHHHHHHHHHHHH-HHcCcEEEecccCCCCC--------CC------------
Q 013478 257 SGTNGEVMPGQWEYQVGPSV-GIDAGDHIWCSRYLLERIT-EQAGVVLSLDPKPIEGD--------WN------------ 314 (442)
Q Consensus 257 ~~~h~E~~pGQ~Ei~l~p~~-~i~aaD~l~~~R~iik~vA-~~~Gl~aTFmPKP~~g~--------~~------------ 314 (442)
..+..|..-.|.|+...++. .-++-+.|-..+.++.+.+ ....+-..=|| ++++ |.
T Consensus 66 p~IttDfsEsqlE~iTp~~~s~~ea~~~L~~l~~~v~~~l~~~E~LWp~SmP--l~~~~~~ipiA~yg~sn~g~~k~~YR 143 (525)
T 3nzt_A 66 NSITVDFSENLLELITKPHDSIDKAIGELYQLSAFTLDNMHSDEIILNTSMP--LSANDNDIQEADFGSSNSGRMKRVYR 143 (525)
T ss_dssp SSEEESSBTTEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSC--CSCCGGGCCBCCCCSSHHHHHHHHHH
T ss_pred CCCCchhhhhHhhhcCCCCCCHHHHHHHHHHHHHHHHHhhCCCCeEEeecCC--CCCCcCCCceeeccccccCcchHHHH
Confidence 35677888899999999985 6668888888888888876 55555555576 3221 21
Q ss_pred -------------Cceeeeeccccccc-----c--CCchhhHH-HHHHhhHHHHHHHHhccc
Q 013478 315 -------------GAGCHTNYSTKSMR-----E--EGGYETIK-KAILNLSLRHKEHISAYG 355 (442)
Q Consensus 315 -------------GSG~H~h~Sl~~~~-----~--~~G~~~~~-~~iaGL~L~H~~al~a~~ 355 (442)
=||.|+|||+-+.. + ....+... ..|.++ ++|...|..++
T Consensus 144 ~gL~~rYG~~~q~IsGiH~Nfsl~~~~~~~l~~~~~~~~s~~Y~~Lirnf-~Ry~Wll~YLf 204 (525)
T 3nzt_A 144 KGLSARYGKIMQIISGIHYNFSFDKDLISNIATNKQVSISDIYFDVLNNY-FEFMWLLPYLF 204 (525)
T ss_dssp HHHHHHHCSGGGGCCBEEEEEECCHHHHHHHHHHHTCCHHHHHHHHHHHH-HHHTTHHHHHH
T ss_pred HHHHHHhchhheeeeeEEEEecCCHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHHHHHh
Confidence 16999999996531 0 00111111 345565 78888887663
No 18
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=62.11 E-value=21 Score=30.56 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=58.2
Q ss_pred HHHHHhhhcCCccceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCceeecccChhHHHHHHHHHHHHHHHcCCceeeec
Q 013478 181 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTN 260 (442)
Q Consensus 181 k~~~~~l~~~G~~~~~G~E~EF~L~~~~~~~p~g~p~~~~p~~~g~yy~~~~~~~~~~~di~e~~~~al~~aGI~i~~~h 260 (442)
.++++.+.+.|..+..-.++||++.=.+. +-++.+...+...|..|+..-
T Consensus 22 ~~Vl~~L~e~Gddl~~~r~IEH~~~F~de------------------------------~~~e~~a~~~~~~Gy~v~~~~ 71 (132)
T 1nxi_A 22 RDIIQALLEDGSDPDALYEIEHHLFAEDF------------------------------DKLEKAAVEAFKMGFEVLEAE 71 (132)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEEEEEESCH------------------------------HHHHHHHHHHHHHTCCCBCCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCEEEecc
Confidence 56777777789999999999999875431 122333334567899886322
Q ss_pred C---CCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcE
Q 013478 261 G---EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 301 (442)
Q Consensus 261 ~---E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~ 301 (442)
. |-+-..|++.+.-...+...+=.-....+++ +|+++|..
T Consensus 72 ~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~~-lA~~~~G~ 114 (132)
T 1nxi_A 72 ETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLVN-LAEKFDII 114 (132)
T ss_dssp CBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHHH-HHHHHTCE
T ss_pred cccCCCCceeEEEEEEEeccCCHHHHHHHHHHHHH-HHHHhCcE
Confidence 2 3333469999887777765554444555554 88888754
No 19
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=58.12 E-value=23 Score=34.79 Aligned_cols=125 Identities=9% Similarity=0.092 Sum_probs=77.3
Q ss_pred HHcC-CceeeecCCC-C-----------CCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccCCCCCCCCc
Q 013478 250 LYAG-INISGTNGEV-M-----------PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGA 316 (442)
Q Consensus 250 ~~aG-I~i~~~h~E~-~-----------pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP~~g~~~GS 316 (442)
-++| |++.-.+.-. . |.+.=|.|.|.+++.-.|-.-.++. +|++-++.|+.. | ||- . -|.
T Consensus 106 aq~g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA~~-~r~~L~~lGL~~-f-~KT-S---Ggk 178 (303)
T 2iru_A 106 AQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARA-VRDLLADIGLVT-F-PVT-S---GSK 178 (303)
T ss_dssp HHTTCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHHHHHHHHH-HHHHHHTTTCCC-E-EEE-C---SSS
T ss_pred HHhCcEeeeCCccccccccccccCCCCCCCEEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCcc-c-eEc-c---CCC
Confidence 4455 6766554333 2 7788899999998877776666655 899999999874 6 772 2 378
Q ss_pred eeeeeccccccccCCchhhHHHHHHhhHHHHHHHHh--cccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 013478 317 GCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHIS--AYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 390 (442)
Q Consensus 317 G~H~h~Sl~~~~~~~G~~~~~~~iaGL~L~H~~al~--a~~~nsYkRL~~~~eap~~~~~sWG~~NR~a~IRIp~~ 390 (442)
|+|+-+-|... -+....+.|...+ -+++..-. .|+...-|...++. . ++-|-.++|+..+=-|.+
T Consensus 179 GlHV~vPl~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~gk---I--fvDy~qN~~g~T~vapYS 245 (303)
T 2iru_A 179 GLHLYTPLDEP---VSSRGATVLAKRV-AQRLEQAMPALVTSTMTKSLRAGK---V--FVDWSQNSGSKTTIAPYS 245 (303)
T ss_dssp CEEEEEEEEEE---ECHHHHHHHHHHH-HHHHHHHCTTTEESSCCGGGCTTS---E--EEECGGGSTTCCEECTTC
T ss_pred eEEEEEEcCCC---CCHHHHHHHHHHH-HHHHHHHCcceehhhhhHHhCCCC---E--EEECccCCCCCeeEecCc
Confidence 99999999652 2344444454444 33333332 34443334443332 2 777887777765554433
No 20
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=51.70 E-value=10 Score=29.29 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEeccc
Q 013478 242 ADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 307 (442)
Q Consensus 242 ~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPK 307 (442)
+.++...+...|++|..++.....|.+.+.+.-.. .-.+++--.+.-++++++++|+.+++.|.
T Consensus 19 la~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~--~~~~~l~~l~~~L~~~~~~~~~~~~~~~~ 82 (91)
T 1zpv_A 19 VAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS--DEKQDFTYLRNEFEAFGQTLNVKINIQSA 82 (91)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE--SSCCCHHHHHHHHHHHHHHHTEEEEEEEG
T ss_pred HHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe--CCCCCHHHHHHHHHHHHHHcCCEEEEeeH
Confidence 44444456789999999888766677665554210 01124445667789999999999988764
No 21
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=33.88 E-value=40 Score=28.30 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHcCCceeeecC-------C----CCCCceEEEeCCChhHH--------HHHHHHHHHHHHHHHHHHc
Q 013478 238 GRDIADAHYKACLYAGINISGTNG-------E----VMPGQWEYQVGPSVGID--------AGDHIWCSRYLLERITEQA 298 (442)
Q Consensus 238 ~~di~e~~~~al~~aGI~i~~~h~-------E----~~pGQ~Ei~l~p~~~i~--------aaD~l~~~R~iik~vA~~~ 298 (442)
-.+|+.++.++|...||+.+..+. + ...-|||+++--.+... ..=+.|.+|.+..+|..+.
T Consensus 39 P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L 118 (120)
T 3ose_A 39 PNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 389999999999999998876432 1 12348998875443211 2225678999999998876
Q ss_pred Cc
Q 013478 299 GV 300 (442)
Q Consensus 299 Gl 300 (442)
.+
T Consensus 119 ~L 120 (120)
T 3ose_A 119 KL 120 (120)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 22
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=29.96 E-value=1e+02 Score=26.20 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCceeee--------cCCC---CCCceEEEeCCChhH-----H---HHHHHHHHHHHHHHHHHHcC
Q 013478 239 RDIADAHYKACLYAGINISGT--------NGEV---MPGQWEYQVGPSVGI-----D---AGDHIWCSRYLLERITEQAG 299 (442)
Q Consensus 239 ~di~e~~~~al~~aGI~i~~~--------h~E~---~pGQ~Ei~l~p~~~i-----~---aaD~l~~~R~iik~vA~~~G 299 (442)
.+|+.+++++|...||+.+.. |... ..=|||+++--.+.+ + ..-+.|.+|.+..+|..+..
T Consensus 40 ~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eLk 119 (126)
T 1v5s_A 40 GDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (126)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHHh
Confidence 899999999999999987751 2111 123899998644311 1 22255999999999999887
Q ss_pred c
Q 013478 300 V 300 (442)
Q Consensus 300 l 300 (442)
+
T Consensus 120 L 120 (126)
T 1v5s_A 120 L 120 (126)
T ss_dssp C
T ss_pred c
Confidence 5
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=21.49 E-value=43 Score=29.63 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCceeeecCCC--------CCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEeccc
Q 013478 240 DIADAHYKACLYAGINISGTNGEV--------MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 307 (442)
Q Consensus 240 di~e~~~~al~~aGI~i~~~h~E~--------~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPK 307 (442)
.|+.++.+.|...|++|+.++.-. +.+.|-+.+.-..+ . ..++-..|.-+..+|+++|+...|.+-
T Consensus 105 Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~-~~~~~~l~~~l~~~~~~~~~~~~~~~~ 178 (192)
T 1u8s_A 105 GLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-S-GCNLMQLQEEFDALCTALDVQGSLNFI 178 (192)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-T-TSCHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-C-CCCHHHHHHHHHHHHHHhCceEEEEEc
Confidence 456666667888999998766543 33454443331111 1 112345778888999999999999873
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=21.36 E-value=3.2e+02 Score=23.77 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCCCceEEEeCCChhHHHHHHHHHHHHHHHHHHHHcCcEEEecccC
Q 013478 240 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKP 308 (442)
Q Consensus 240 di~e~~~~al~~aGI~i~~~h~E~~pGQ~Ei~l~p~~~i~aaD~l~~~R~iik~vA~~~Gl~aTFmPKP 308 (442)
.|+.++...|...|++|....--...|+|=+.+.-..+. +.+-..+..+..++.++|+...+.+.+
T Consensus 18 Giva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 18 GICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 355666667888999998876555567766443322111 345557788888999999998876543
Done!