Query 013480
Match_columns 442
No_of_seqs 139 out of 283
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0917 Uncharacterized conser 100.0 3.2E-82 6.9E-87 614.4 33.3 325 1-440 1-338 (338)
2 PF04652 DUF605: Vta1 like; I 100.0 1E-71 2.2E-76 557.9 10.7 154 9-164 1-160 (380)
3 KOG0916 1,3-beta-glucan syntha 96.1 0.0036 7.8E-08 73.5 3.3 56 10-67 38-93 (1679)
4 PF13030 DUF3891: Protein of u 78.8 14 0.00031 36.1 9.2 69 3-73 73-142 (221)
5 TIGR00714 hscB Fe-S protein as 70.7 26 0.00057 32.5 8.4 38 27-68 55-92 (157)
6 cd02682 MIT_AAA_Arch MIT: doma 65.3 29 0.00063 29.0 6.7 68 79-146 1-70 (75)
7 PRK01356 hscB co-chaperone Hsc 64.5 27 0.00058 32.8 7.2 74 52-136 88-166 (166)
8 KOG0508 Ankyrin repeat protein 56.0 1E+02 0.0022 34.5 10.5 79 75-154 409-487 (615)
9 PF04212 MIT: MIT (microtubule 53.9 67 0.0014 25.2 6.8 40 82-121 3-42 (69)
10 KOG1923 Rac1 GTPase effector F 53.3 4.4E+02 0.0096 31.0 15.9 33 121-153 212-244 (830)
11 PRK03578 hscB co-chaperone Hsc 48.3 54 0.0012 31.1 6.4 39 27-69 72-110 (176)
12 COG2178 Predicted RNA-binding 44.9 22 0.00047 35.0 3.2 34 403-436 27-60 (204)
13 PF15573 Imm27: Immunity prote 42.4 1.3E+02 0.0029 30.4 8.2 75 32-123 32-125 (259)
14 cd02681 MIT_calpain7_1 MIT: do 41.0 1.7E+02 0.0036 24.4 7.5 67 80-147 2-72 (76)
15 PF12631 GTPase_Cys_C: Catalyt 40.8 40 0.00086 27.2 3.7 37 400-436 16-53 (73)
16 cd02678 MIT_VPS4 MIT: domain c 40.7 1.7E+02 0.0038 23.5 7.4 66 82-149 4-73 (75)
17 KOG0917 Uncharacterized conser 39.0 3.7E+02 0.0081 28.1 11.0 29 403-435 298-326 (338)
18 PF00515 TPR_1: Tetratricopept 38.2 44 0.00095 21.9 3.0 24 411-434 7-30 (34)
19 COG5593 Nucleic-acid-binding p 37.5 2.1E+02 0.0045 32.6 9.5 73 70-142 171-258 (821)
20 KOG1924 RhoA GTPase effector D 36.8 2E+02 0.0044 34.0 9.5 18 130-147 467-484 (1102)
21 cd02682 MIT_AAA_Arch MIT: doma 36.6 52 0.0011 27.5 3.8 35 402-436 3-37 (75)
22 PF07719 TPR_2: Tetratricopept 36.6 49 0.0011 21.3 3.0 26 409-434 5-30 (34)
23 PF12309 KBP_C: KIF-1 binding 36.4 5.4E+02 0.012 27.3 12.1 70 75-147 141-210 (371)
24 KOG1117 Rho- and Arf-GTPase ac 35.6 54 0.0012 38.7 4.9 63 21-84 722-785 (1186)
25 PF13250 DUF4041: Domain of un 35.3 39 0.00085 26.6 2.8 29 408-436 10-38 (56)
26 KOG1924 RhoA GTPase effector D 34.7 2.7E+02 0.0058 33.0 10.0 27 109-135 399-425 (1102)
27 PF04212 MIT: MIT (microtubule 34.0 63 0.0014 25.3 3.8 35 402-436 2-36 (69)
28 PF02841 GBP_C: Guanylate-bind 33.4 2.3E+02 0.005 28.5 8.6 68 32-102 77-146 (297)
29 COG2956 Predicted N-acetylgluc 32.0 47 0.001 35.3 3.5 22 103-124 112-133 (389)
30 cd02681 MIT_calpain7_1 MIT: do 31.4 66 0.0014 26.7 3.7 34 403-436 4-37 (76)
31 PRK05014 hscB co-chaperone Hsc 31.3 3.1E+02 0.0068 25.8 8.6 37 28-68 68-104 (171)
32 cd02656 MIT MIT: domain contai 31.2 2.5E+02 0.0054 22.3 6.9 63 82-146 4-70 (75)
33 PF13414 TPR_11: TPR repeat; P 31.1 35 0.00075 25.6 1.8 30 405-434 3-32 (69)
34 PF00627 UBA: UBA/TS-N domain; 30.0 54 0.0012 23.0 2.5 21 407-428 17-37 (37)
35 KOG2199 Signal transducing ada 29.7 2E+02 0.0043 31.4 7.6 17 76-92 102-118 (462)
36 cd02678 MIT_VPS4 MIT: domain c 29.5 81 0.0017 25.4 3.8 35 402-436 3-37 (75)
37 cd02684 MIT_2 MIT: domain cont 28.7 3.3E+02 0.0071 22.3 8.1 66 84-151 6-75 (75)
38 PRK05685 fliS flagellar protei 28.5 72 0.0016 28.6 3.7 43 394-436 24-66 (132)
39 PRK01773 hscB co-chaperone Hsc 28.3 3.7E+02 0.008 25.5 8.5 39 27-68 68-106 (173)
40 KOG1308 Hsp70-interacting prot 27.5 60 0.0013 34.6 3.4 62 372-434 80-143 (377)
41 TIGR00208 fliS flagellar biosy 27.5 78 0.0017 28.2 3.7 38 399-436 25-62 (124)
42 PRK14163 heat shock protein Gr 26.7 2.2E+02 0.0048 28.2 6.9 18 80-97 89-106 (214)
43 PF13181 TPR_8: Tetratricopept 26.6 88 0.0019 20.3 3.0 20 415-434 11-30 (34)
44 COG0447 MenB Dihydroxynaphthoi 26.6 62 0.0013 32.8 3.1 18 28-45 180-197 (282)
45 PF08580 KAR9: Yeast cortical 26.2 1E+02 0.0023 35.2 5.2 32 103-134 113-145 (683)
46 PF13512 TPR_18: Tetratricopep 26.1 1.9E+02 0.0042 26.8 6.1 55 85-147 11-68 (142)
47 PF15372 DUF4600: Domain of un 26.0 1.8E+02 0.004 26.8 5.8 21 54-74 54-74 (129)
48 KOG4552 Vitamin-D-receptor int 26.0 2.8E+02 0.0061 28.0 7.4 98 50-150 7-122 (272)
49 KOG0949 Predicted helicase, DE 25.7 2.8E+02 0.006 33.8 8.4 42 74-115 857-898 (1330)
50 smart00745 MIT Microtubule Int 25.5 1.1E+02 0.0023 24.3 3.8 36 401-436 4-39 (77)
51 KOG4256 Kinetochore component 25.5 1E+03 0.022 29.7 12.8 41 57-97 933-973 (2209)
52 PF09670 Cas_Cas02710: CRISPR- 25.5 2.6E+02 0.0057 29.3 7.7 44 79-122 236-280 (379)
53 PF05648 PEX11: Peroxisomal bi 25.2 5.2E+02 0.011 23.8 8.9 113 10-123 3-143 (223)
54 smart00745 MIT Microtubule Int 25.0 3.5E+02 0.0075 21.4 6.9 39 82-120 6-44 (77)
55 cd02656 MIT MIT: domain contai 24.9 1.1E+02 0.0024 24.3 3.8 35 402-436 3-37 (75)
56 KOG0818 GTPase-activating prot 24.7 1E+02 0.0022 34.5 4.5 79 60-143 256-342 (669)
57 KOG2199 Signal transducing ada 24.4 3.1E+02 0.0067 30.0 7.9 9 291-299 399-408 (462)
58 PRK13689 hypothetical protein; 24.1 4.1E+02 0.0088 22.6 7.0 24 46-69 6-29 (75)
59 cd02683 MIT_1 MIT: domain cont 23.9 3.4E+02 0.0074 22.3 6.6 65 81-148 3-72 (77)
60 PF03130 HEAT_PBS: PBS lyase H 23.6 1.5E+02 0.0032 19.5 3.6 25 406-433 2-26 (27)
61 PF11464 Rbsn: Rabenosyn Rab b 23.5 91 0.002 23.6 2.8 31 400-430 3-33 (42)
62 PF09724 DUF2036: Uncharacteri 23.3 3E+02 0.0064 28.0 7.4 75 75-149 161-246 (325)
63 PF06466 PCAF_N: PCAF (P300/CB 22.3 7.6E+02 0.016 25.3 9.8 54 77-138 147-211 (252)
64 PF11922 DUF3440: Domain of un 22.1 1.2E+02 0.0026 29.5 4.0 84 51-148 66-162 (181)
65 cd03572 ENTH_epsin_related ENT 21.3 4.9E+02 0.011 23.6 7.5 81 50-148 34-119 (122)
66 PF02561 FliS: Flagellar prote 21.0 1.1E+02 0.0023 26.8 3.2 35 402-436 26-60 (122)
67 PF03154 Atrophin-1: Atrophin- 20.9 1.5E+03 0.034 27.4 19.7 21 189-209 137-157 (982)
68 KOG1126 DNA-binding cell divis 20.8 2.5E+02 0.0055 32.1 6.7 32 80-116 538-569 (638)
69 PF14788 EF-hand_10: EF hand; 20.7 91 0.002 24.5 2.4 29 81-110 20-48 (51)
70 KOG1981 SOK1 kinase belonging 20.7 4.4E+02 0.0096 29.5 8.4 51 70-120 170-225 (513)
71 PRK14147 heat shock protein Gr 20.5 2.9E+02 0.0062 26.3 6.2 8 147-154 112-119 (172)
No 1
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.2e-82 Score=614.35 Aligned_cols=325 Identities=38% Similarity=0.584 Sum_probs=266.4
Q ss_pred CCCCCcchhhhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhc------ccCCh
Q 013480 1 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKS------LKLGP 74 (442)
Q Consensus 1 m~s~~~P~K~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~------l~dd~ 74 (442)
|.++++|...|++|||||+|++++||||||||||||||.|||++. .+.|||+||..|||+||++|++ |++++
T Consensus 1 m~~p~~pa~si~~~l~~a~e~~k~dpvvayycrlyamq~gmKid~--qT~e~rk~lsgLm~~lealkkqlaDneaitne~ 78 (338)
T KOG0917|consen 1 MPLPPLPAQSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--QTPECRKFLSGLMDQLEALKKQLADNEAITNEI 78 (338)
T ss_pred CCCCCCChHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcccCCc--cCHHHHHHHHHHHHHHHHHHHHhcchhhhhhch
Confidence 889999999999999999999999999999999999999999985 6699999999999999987664 55678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCCCC
Q 013480 75 EDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVP 154 (442)
Q Consensus 75 ~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P~P 154 (442)
++++|||+||||||++||++||+|+++|+++|+||+|++|||||.+||||++|+.+++|||||||++|+||||+||+|+|
T Consensus 79 ~aqaHiE~fAlklF~~ADKqdragr~dk~vvkaFYtA~~~~dILs~FGel~e~~l~~rKYAkWKat~I~~clk~G~~p~P 158 (338)
T KOG0917|consen 79 VAQAHIENFALKLFLYADKQDRAGRFDKNVVKAFYTASLLIDILSVFGELTEENLKHRKYAKWKATYIHNCLKNGETPQP 158 (338)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhcccchhHHHHHHHHHHHHHHHHHhcCCChHHHhhhHHhHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 013480 155 GPPGGGED-LSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDK 233 (442)
Q Consensus 155 gpp~~ee~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (442)
|+.++|++ ..|+ .. +
T Consensus 159 g~~~deD~d~di~----~~--------------------------------------~---------------------- 174 (338)
T KOG0917|consen 159 GPVGDEDDDNDIE----EN--------------------------------------E---------------------- 174 (338)
T ss_pred CCCCCcccccccC----cc--------------------------------------c----------------------
Confidence 99888874 3333 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCCCC
Q 013480 234 VSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQ-YSQEPQQH--LPHNY 310 (442)
Q Consensus 234 ~~~~~~~~~~sp~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~p~~~--~~~~~ 310 (442)
+.+++..|+ ..++....|++||.++ |.|+|-++ ..++|
T Consensus 175 -------------------------------------~~s~d~~P~--~tGp~~~syp~Py~p~p~~q~p~p~~p~~~~y 215 (338)
T KOG0917|consen 175 -------------------------------------DASADSLPT--QTGPTQPSYPSPYDPSPYHQDPMPSGPYTGIY 215 (338)
T ss_pred -------------------------------------cccCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcce
Confidence 000111111 2233334467777777 77766555 55679
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 013480 311 PSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSP-QSAVP--APTASYQLTSEYSSSSRNGTISEPPPAQ 387 (442)
Q Consensus 311 ~~~~~~~~~~p~fqs~p~f~~~~~p~~~~~~p~~~~~~~~~~~~-~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (442)
.+|++++.++| |+||+|.+++|||.|++++..+..+...+++ ..+|. +.++..|.+..+....+ ... +
T Consensus 216 iS~~~S~ns~~--qs~~s~s~s~~~S~pP~~pa~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~~a~d~-~~~------q 286 (338)
T KOG0917|consen 216 ISHEPSPNSLP--QSYPSFSESSLPSTPPGAPAPANNPAPVYSSTGVAPNPSTFFTIQPTPQPIPAIDP-ALF------Q 286 (338)
T ss_pred eecccCccccc--ccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc-ccc------c
Confidence 99999999999 8999999999999999999999998887665 33332 22222222222222221 100 0
Q ss_pred ccccCCCCCCChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhcCCCC
Q 013480 388 KYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSA 440 (442)
Q Consensus 388 ~~~~~~~~~~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~~~~~ 440 (442)
.+. +..|||++|+++||||+||||+|||+||||+|||++|+|||+||+++|+
T Consensus 287 PV~-~~g~qptpE~faea~K~~kyA~sAl~yedVstavenL~KaL~lLt~~s~ 338 (338)
T KOG0917|consen 287 PVS-QGGVQPTPEDFAEAQKYCKYAGSALQYEDVSTAVENLQKALKLLTTGSE 338 (338)
T ss_pred ccc-CCCCccCHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhhcCCC
Confidence 011 7899999999999999999999999999999999999999999999874
No 2
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=100.00 E-value=1e-71 Score=557.90 Aligned_cols=154 Identities=54% Similarity=0.862 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhccc------CChhHHHHHHH
Q 013480 9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLK------LGPEDSLHLEG 82 (442)
Q Consensus 9 K~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~------dd~~a~ayVEn 82 (442)
|.|.|||+||+||++++|||||||||||||+||+++. +++||+.||+.|||+||++|+++. |+.++++|||+
T Consensus 1 k~i~~~l~~a~e~~~~~p~v~Y~c~~ya~~~~l~~~~--~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~ 78 (380)
T PF04652_consen 1 KSISPFLKRAQELEKRDPVVAYYCRLYAVEQILKLKL--RSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVEN 78 (380)
T ss_dssp --HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT-TT----HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhcCCEEhHHHHHHHHHHHcCCCC--CChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHH
Confidence 7899999999999999999999999999999999876 889999999999999999998776 66789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCCCCCCCCCCCC
Q 013480 83 FALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGED 162 (442)
Q Consensus 83 FALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P~Pgpp~~ee~ 162 (442)
|||+||++||++||+|++|++|+|+||||++|||||++||+|++|+++|+|||||||+||+||||+|++|++|++.++|+
T Consensus 79 fa~~~f~~a~~~~~~~~~~~~~~~~f~~a~~~~~~l~~f~~~~~~~~~k~kyak~~a~~i~k~~~~g~~p~~~~~~~~~~ 158 (380)
T PF04652_consen 79 FALKLFNRADKEDRAGRATKQTAKTFYAASTFFEVLNIFGELDEEIEEKIKYAKWKAARIAKALKEGEDPNPGPPLEEEE 158 (380)
T ss_dssp HHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----------------
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhCCCChHHhhceeeeeeeHhhhHHHHHCCCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 013480 163 LS 164 (442)
Q Consensus 163 ~~ 164 (442)
..
T Consensus 159 ~~ 160 (380)
T PF04652_consen 159 ED 160 (380)
T ss_dssp --
T ss_pred cc
Confidence 44
No 3
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=96.13 E-value=0.0036 Score=73.51 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhh
Q 013480 10 LLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDK 67 (442)
Q Consensus 10 ~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~K 67 (442)
.|.|+|+.|++++..||.|+|.||.||.++ .+|..++++++++|.+.+|+..+..+
T Consensus 38 ~i~pilr~a~~i~~~~p~~a~l~~~~~~e~--~~D~~s~gr~v~qf~~~~~~~~~~~~ 93 (1679)
T KOG0916|consen 38 DIAPILRVANEIEQQNPRVAYLCRFHAFEK--RMDPTSSGRGVRQFKTLDLNSYTSLG 93 (1679)
T ss_pred ccchhhhccccccccCchhhhccccchHhh--cCCCCCCcchhhhhhhhhccccCccc
Confidence 399999999999999999999999999999 67888899999999999994444433
No 4
>PF13030 DUF3891: Protein of unknown function (DUF3891)
Probab=78.77 E-value=14 Score=36.13 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCCcchhh-hHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhcccCC
Q 013480 3 SETEPAKL-LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73 (442)
Q Consensus 3 s~~~P~K~-I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~dd 73 (442)
+...|... |.-|-+.-++.+..+|.+++.|-+|..-.--.. .+.++++..|+......=++..++++.+
T Consensus 73 F~~~p~~~~~~~~~~gi~~~~~~~~yaaLL~S~H~~~ly~~~--~~~~~~~~~Fl~~e~~rQ~~l~~~L~~~ 142 (221)
T PF13030_consen 73 FMDYPLQEKLAFYRRGIDEAEQKSPYAALLCSMHYSFLYENR--TGQSPEVDAFLDEEEQRQERLRAELGID 142 (221)
T ss_pred hhhCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33444333 666666777889999999999999987665543 2237999999988888888777777644
No 5
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=70.71 E-value=26 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhh
Q 013480 27 LVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 27 VVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
.-.|.|.+. |+.+.....+.....||+.+|++-|...+
T Consensus 55 Ra~ylL~l~----g~~~~~e~~~~~d~~fLme~Me~rE~lee 92 (157)
T TIGR00714 55 RAEYMLSLH----GIDLASEQHSVRDTAFLMEQLELREELDE 92 (157)
T ss_pred hHHHHHHhc----CCCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 566777766 55443322334567899999999887643
No 6
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.30 E-value=29 Score=28.95 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHhHHHHHHHH
Q 013480 79 HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGA--LQPDLEEKQKYAAWKAADIRKAM 146 (442)
Q Consensus 79 yVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGe--LddDi~eK~KYAKwKAa~I~KaL 146 (442)
++|+-|.++..+|-..|+.|++...+.--=-++..|+.+|+..-+ +-.-..+|++=.+=||-.|.+.+
T Consensus 1 ~L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 1 MLEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468889999999999999999888776555566666677776522 22223555555555655555544
No 7
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=64.55 E-value=27 Score=32.76 Aligned_cols=74 Identities=20% Similarity=0.134 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH-----HHHHHHHHHHHHhhhcCCch
Q 013480 52 TNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAK-----TFYAASIFFEILNQFGALQP 126 (442)
Q Consensus 52 ~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK-----~F~aAs~LfEVL~~FGeLdd 126 (442)
-..||+..|++-|+..+. .+. .+ ++.+..++=.+.... ...+.. .|-.|..+.-=|+-|..+..
T Consensus 88 d~~fLme~me~rE~le~~-~~~-~~---L~~l~~~~~~~~~~~------~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~ 156 (166)
T PRK01356 88 SPLELSIFWDEMERIENT-ILF-SD---LEKIKNKYELMYKNE------IDSLKQAFEEQNLSDATIKTSKLKYIGTLLN 156 (166)
T ss_pred CHHHHHHHHHHHHHHHcC-CCH-HH---HHHHHHHHHHHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 368999999998776433 211 11 333332221111110 011111 23566666666777778888
Q ss_pred hHHHHHHHHH
Q 013480 127 DLEEKQKYAA 136 (442)
Q Consensus 127 Di~eK~KYAK 136 (442)
+|++|++=|+
T Consensus 157 ~i~~k~~~~~ 166 (166)
T PRK01356 157 KLQEKIKSCK 166 (166)
T ss_pred HHHHHhhccC
Confidence 8888888664
No 8
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=56.01 E-value=1e+02 Score=34.45 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCCCC
Q 013480 75 EDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVP 154 (442)
Q Consensus 75 ~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P~P 154 (442)
.+..+|.+-+..=..+|...-++-....+.-|+.+++..|..||... +.++|...+++=.-|+...+.-|-|+|.++.-
T Consensus 409 ~~~~~Vl~k~vlEvEra~~~t~~p~d~~~~~k~l~~~lhLv~llek~-~ct~e~~~~k~~~iyrl~~l~pr~~~~ft~LH 487 (615)
T KOG0508|consen 409 DDLMGVLTKSVLEVERALALTREPLDPAQYNKALYIILHLVCLLEKV-ECTPEQDHLKHQTIYRLLKLAPRGKNGFTLLH 487 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhccccccCCCchhh
Confidence 46677776666666778777777666668899999999999999887 34455555555556666667777888887765
No 9
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.89 E-value=67 Score=25.17 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhh
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQF 121 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~F 121 (442)
+-|..+..+|-..|+.|++...+..---++..|+.+++.-
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~ 42 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE 42 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 4678899999999999988777754444455555566665
No 10
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=53.28 E-value=4.4e+02 Score=31.02 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=27.4
Q ss_pred hcCCchhHHHHHHHHHHhHHHHHHHHHcCCCCC
Q 013480 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPV 153 (442)
Q Consensus 121 FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P~ 153 (442)
-+++.||+--.+||++-+--.|.+|.+.+++++
T Consensus 212 ~~~~~dels~m~k~~~~~e~~lk~~~~~l~~ki 244 (830)
T KOG1923|consen 212 RKALLDELSCMQKLSIEKERSLKAIARLLETKI 244 (830)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 366777888888999999999999999999653
No 11
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=48.26 E-value=54 Score=31.05 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhc
Q 013480 27 LVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 27 VVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~ 69 (442)
.-.|.|.++ |..+...........|||+.|++=|+..+.
T Consensus 72 Ra~Yll~l~----G~~~~~e~~~~~d~~fLme~mE~rE~lee~ 110 (176)
T PRK03578 72 RARYLLHLR----GVDVQAENNTAMPPAFLMQQMEWREAIEDA 110 (176)
T ss_pred HHHHHHHhc----CCCCccccCCCCCHHHHHHHHHHHHHHHHh
Confidence 345666555 444422222344678999999997775543
No 12
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.86 E-value=22 Score=34.97 Aligned_cols=34 Identities=26% Similarity=0.130 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 403 SEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 403 ~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
-++.++|+.||.++.-.|.+.|.+.|++|-+++.
T Consensus 27 Rei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~ 60 (204)
T COG2178 27 REIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVE 60 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999887764
No 13
>PF15573 Imm27: Immunity protein 27
Probab=42.43 E-value=1.3e+02 Score=30.41 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHh--h-------cCCCCH
Q 013480 32 CRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQD--R-------AGRADL 102 (442)
Q Consensus 32 CRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qD--R-------aG~~tk 102 (442)
|-|. +-.+||+ .|-.++..|++||++...+ .|.|.+.|||-...+.| | -+.++.
T Consensus 32 ~~ll-i~El~K~----GDFsvK~LLiqLMN~TkDE------------~vLNLCiRlFcSV~THdDL~~~nNl~FLs~asE 94 (259)
T PF15573_consen 32 CLLL-IIELLKK----GDFSVKNLLIQLMNQTKDE------------AVLNLCIRLFCSVATHDDLRDSNNLRFLSSASE 94 (259)
T ss_pred HHHH-HHHHHHh----CCchhhHHHHHHHhcchhH------------HHHHHHHHHHHhhcchHhhhcccceehHhhhhH
Confidence 3344 3344554 4577888899998765422 47788888887655433 1 145777
Q ss_pred HHHHHHHHHHH----------HHHHHhhhcC
Q 013480 103 NTAKTFYAASI----------FFEILNQFGA 123 (442)
Q Consensus 103 ~taK~F~aAs~----------LfEVL~~FGe 123 (442)
.++.+|-++++ |+.+|..|.+
T Consensus 95 ~~v~TF~s~A~~tlSyeVIPYLLaLleeWed 125 (259)
T PF15573_consen 95 FGVFTFASGAITTLSYEVIPYLLALLEEWED 125 (259)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHhc
Confidence 88888887764 6667777766
No 14
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.99 E-value=1.7e+02 Score=24.36 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHH
Q 013480 80 LEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMK 147 (442)
Q Consensus 80 VEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLK 147 (442)
+|+-|.++.-+|-..|++|++...+ +.|.-|..+|-..-.++.-++- +.+|.+=..=||-.|.+.|.
T Consensus 2 le~~Ai~~a~~Ave~D~~g~y~eA~-~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~ 72 (76)
T cd02681 2 LERDAVQFARLAVQRDQEGRYSEAV-FYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQ 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778889999999999999988776 4555555555222234433332 23333333334455555443
No 15
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=40.84 E-value=40 Score=27.22 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhhhhhccc-ccChHHHHHHHHHHHHHhc
Q 013480 400 EKISEAHKAARFAVGALA-FDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 400 ~~i~~a~k~~~~a~~al~-~~dv~~a~~~l~~al~ll~ 436 (442)
..+.+|.++..-|+.+|+ ..+++.+..+|+.|++.|+
T Consensus 16 ~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~ 53 (73)
T PF12631_consen 16 QLLEQALEHLEDALEALENGLPLDLVAEDLREALESLG 53 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 467788888888888887 6789999999999999886
No 16
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.68 E-value=1.7e+02 Score=23.51 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHHcC
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMKEG 149 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLKeG 149 (442)
+-|..++.+|-..|..|++...+.---.++-.|+.+++. +-++. +.+|.+=..=+|-.|..-|+.+
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~--e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~~ 73 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKY--EKNPKSKESIRAKCTEYLDRAEKLKEYLAKK 73 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457888999999999998777664444444444445543 22332 3444444444566666666543
No 17
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=3.7e+02 Score=28.13 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHhhhhhhcccccChHHHHHHHHHHHHHh
Q 013480 403 SEAHKAARFAVGALAFDDVSVAVDYLKKSLELL 435 (442)
Q Consensus 403 ~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll 435 (442)
++..++-|++-=|.. -.+.+..+-|.+-|
T Consensus 298 E~faea~K~~kyA~s----Al~yedVstavenL 326 (338)
T KOG0917|consen 298 EDFAEAQKYCKYAGS----ALQYEDVSTAVENL 326 (338)
T ss_pred HHHHHHHHHHHHhhh----hcchHHHHHHHHHH
Confidence 444455555543332 23334444444433
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=38.16 E-value=44 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=18.3
Q ss_pred hhhhcccccChHHHHHHHHHHHHH
Q 013480 411 FAVGALAFDDVSVAVDYLKKSLEL 434 (442)
Q Consensus 411 ~a~~al~~~dv~~a~~~l~~al~l 434 (442)
-|.--+.-.+.+.|++.+++||++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHH
Confidence 344445678999999999999987
No 19
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=37.46 E-value=2.1e+02 Score=32.57 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=45.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCH------HHHHHHH---HH--HHHHHHHhhh----cCCchhHHHHHHH
Q 013480 70 LKLGPEDSLHLEGFALNVFAKADKQDRAGRADL------NTAKTFY---AA--SIFFEILNQF----GALQPDLEEKQKY 134 (442)
Q Consensus 70 l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk------~taK~F~---aA--s~LfEVL~~F----GeLddDi~eK~KY 134 (442)
++++...+-++|.|+.+||.+-....-.-.++. ++++..| .| -.++++|++| |+-++-+..|-.|
T Consensus 171 v~~k~l~~~~fesflk~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY 250 (821)
T COG5593 171 VQNKYLKQRIFESFLKNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASY 250 (821)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhH
Confidence 345566788999999999998777665544443 3333322 22 2445677777 5556666667677
Q ss_pred HHHhHHHH
Q 013480 135 AAWKAADI 142 (442)
Q Consensus 135 AKwKAa~I 142 (442)
.-.|.--+
T Consensus 251 ~ilkLe~~ 258 (821)
T COG5593 251 VILKLELL 258 (821)
T ss_pred HHHHHHhc
Confidence 66554333
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.84 E-value=2e+02 Score=33.96 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 013480 130 EKQKYAAWKAADIRKAMK 147 (442)
Q Consensus 130 eK~KYAKwKAa~I~KaLK 147 (442)
.|.|=.+-||+++.|.+.
T Consensus 467 ak~eeseqkA~e~~kk~~ 484 (1102)
T KOG1924|consen 467 AKAEESEQKAAELEKKFD 484 (1102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445666666554
No 21
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=36.64 E-value=52 Score=27.47 Aligned_cols=35 Identities=31% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 402 ISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 402 i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
+..|.+.|+-||.+=.=.+...|+.++++|.++|.
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 45778888888888777899999999999999885
No 22
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=36.58 E-value=49 Score=21.31 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=19.8
Q ss_pred hhhhhhcccccChHHHHHHHHHHHHH
Q 013480 409 ARFAVGALAFDDVSVAVDYLKKSLEL 434 (442)
Q Consensus 409 ~~~a~~al~~~dv~~a~~~l~~al~l 434 (442)
..-|...+.-.+...|++.+++||++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455566778999999999999987
No 23
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=36.42 E-value=5.4e+02 Score=27.26 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHH
Q 013480 75 EDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMK 147 (442)
Q Consensus 75 ~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLK 147 (442)
.+..-|-.++++.|++|..--..-.+.-.=++..+.-+-+|..|..|.+ +...++|..|.++--|-+.++
T Consensus 141 ~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~---~~~r~~kmhkRR~d~Le~~~~ 210 (371)
T PF12309_consen 141 DDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEE---DPDRQIKMHKRRADLLEPLLK 210 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888887766555555556777788888888888853 344555666666555544443
No 24
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=35.61 E-value=54 Score=38.69 Aligned_cols=63 Identities=25% Similarity=0.396 Sum_probs=37.5
Q ss_pred hhhcC-ChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHH
Q 013480 21 LQKHE-PLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFA 84 (442)
Q Consensus 21 LE~~d-PVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFA 84 (442)
|.+.| |||-|-|=-|+-|.||+..---+-.+...=...||..|-++-..+... .+.++||..+
T Consensus 722 Ls~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lr-egeh~vedVt 785 (1186)
T KOG1117|consen 722 LSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLR-EGEHQVEDVT 785 (1186)
T ss_pred ccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeecc-CCcchHHHHH
Confidence 33444 999999999999999985332222333444556666665554333322 2455666554
No 25
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=35.33 E-value=39 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=26.8
Q ss_pred HhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 408 AARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 408 ~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
-|-.||+-+.|..|++.++.|++|.+.|+
T Consensus 10 EcD~~i~kv~~~Ni~~~~~rI~ksf~~iN 38 (56)
T PF13250_consen 10 ECDAAISKVKYNNIDTMEKRIEKSFEQIN 38 (56)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999887
No 26
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.71 E-value=2.7e+02 Score=33.04 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHH
Q 013480 109 YAASIFFEILNQFGALQPDLEEKQKYA 135 (442)
Q Consensus 109 ~aAs~LfEVL~~FGeLddDi~eK~KYA 135 (442)
-+-..|+.||..+-=..+|.--|..|-
T Consensus 399 ~aE~yfLSILQhlllirnDy~~rpqYy 425 (1102)
T KOG1924|consen 399 GAEPYFLSILQHLLLIRNDYYIRPQYY 425 (1102)
T ss_pred cccchHHHHHHHHHHHhhhhhhhHHHH
Confidence 333445555555433333333333333
No 27
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.96 E-value=63 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 402 ISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 402 i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
|.+|.+.++-||.+=+=.+...|++..++|+++|.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 56778888888888778899999999999999874
No 28
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=33.36 E-value=2.3e+02 Score=28.53 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhccc--CChhHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q 013480 32 CRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLK--LGPEDSLHLEGFALNVFAKADKQDRAGRADL 102 (442)
Q Consensus 32 CRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~--dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk 102 (442)
|.--|++.-++.. -..+...|.-.|++.|++..+.+. +...+..+|.++..+||...+...+.|.+..
T Consensus 77 ~~~~A~~~F~~~s---~~d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~ 146 (297)
T PF02841_consen 77 CEKEALEVFMKRS---FGDEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSK 146 (297)
T ss_dssp HHHHHHHHHHHH-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSS
T ss_pred HHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4444555444321 223677899999999998887764 4567889999999999999999999988764
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=31.95 E-value=47 Score=35.33 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 013480 103 NTAKTFYAASIFFEILNQFGAL 124 (442)
Q Consensus 103 ~taK~F~aAs~LfEVL~~FGeL 124 (442)
++++.|.+|+.|=-.=.+|..|
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L 133 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQL 133 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH
Confidence 5777887777554344445443
No 30
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.44 E-value=66 Score=26.71 Aligned_cols=34 Identities=35% Similarity=0.284 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 403 SEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 403 ~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
.+|.+.+|-||.+=+=.+...|+..+++|+++|.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4678888888888888889999999999999985
No 31
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=31.31 E-value=3.1e+02 Score=25.75 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhh
Q 013480 28 VAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 28 VAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
-.|.|.++ |..+.....+.....||+..|++=|+..+
T Consensus 68 a~Yll~l~----g~~~~~~~~~~~d~efLme~me~rE~le~ 104 (171)
T PRK05014 68 AEYLLSLH----GFDLAHEQHTVRDTAFLMEQMELREELED 104 (171)
T ss_pred HHHHHHhc----CCccccccCCcCCHHHHHHHHHHHHHHHh
Confidence 45655554 33332222223346899999999887643
No 32
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.16 E-value=2.5e+02 Score=22.28 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHH
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAM 146 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaL 146 (442)
+-|..+...|-..|+.|+....+.---.++-.|+-+++. +.++. +.+|.+-..=+|-.|..-|
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~--~~~~~~k~~l~~k~~~yl~RaE~Lk~~l 70 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKA--EKEPKLRKLLRKKVKEYLDRAEFLKELL 70 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999998777665444455555555543 33332 2334443333444454444
No 33
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=31.07 E-value=35 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=21.9
Q ss_pred HHHHhhhhhhcccccChHHHHHHHHHHHHH
Q 013480 405 AHKAARFAVGALAFDDVSVAVDYLKKSLEL 434 (442)
Q Consensus 405 a~k~~~~a~~al~~~dv~~a~~~l~~al~l 434 (442)
|..+...|...+.=+|.+.|++.+.+||++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455666677777777888888888888776
No 34
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=29.96 E-value=54 Score=22.97 Aligned_cols=21 Identities=43% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHhhhhhhcccccChHHHHHHH
Q 013480 407 KAARFAVGALAFDDVSVAVDYL 428 (442)
Q Consensus 407 k~~~~a~~al~~~dv~~a~~~l 428 (442)
+.||.|+.+=+. ||+.|++.|
T Consensus 17 ~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 17 EQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHhC
Confidence 468888887777 999999886
No 35
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.68 E-value=2e+02 Score=31.44 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013480 76 DSLHLEGFALNVFAKAD 92 (442)
Q Consensus 76 a~ayVEnFALkLFn~AD 92 (442)
...++|+...-|-+|+|
T Consensus 102 h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 102 HPKVCEKMRDLVKEWSE 118 (462)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34556666666666666
No 36
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=29.54 E-value=81 Score=25.45 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 402 ISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 402 i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
|.+|..+++-||..=.-.+-..|++....|+++|.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 67889999999999889999999999999999874
No 37
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.66 E-value=3.3e+02 Score=22.29 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHHcCCC
Q 013480 84 ALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMKEGRK 151 (442)
Q Consensus 84 ALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLKeGe~ 151 (442)
|..|+.+|-..|.+|++...+.---.+.-.|+-+++. |-++. +.+|..=.-=+|-.|...|++...
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~--e~~~~~k~~lr~k~~eyl~RAE~LK~~l~~~~~ 75 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHY--ETDAQRKEALRQKVLQYVSRAEELKALIASDTQ 75 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 38
>PRK05685 fliS flagellar protein FliS; Validated
Probab=28.49 E-value=72 Score=28.64 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=32.9
Q ss_pred CCCCChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 394 NYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 394 ~~~~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
++|.-.--+..|.+..+.|..|+.=.|+..+.++|.||.++|.
T Consensus 24 p~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~ 66 (132)
T PRK05685 24 PHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIIN 66 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3334444556777888888888888999999999999998875
No 39
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=28.28 E-value=3.7e+02 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhh
Q 013480 27 LVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 27 VVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
.-.|.|.++. |........+.....||+..|++=|+..+
T Consensus 68 RA~YLL~L~~---g~~~~~e~~~~~d~~fLme~ME~rE~lee 106 (173)
T PRK01773 68 RAEAIIALNT---GEQQNLEEKSTQDMAFLMQQMEWREQLEE 106 (173)
T ss_pred HHHHHHHhcc---CCCCCcccccCCCHHHHHHHHHHHHHHHh
Confidence 4568887772 32221112233456899999999777543
No 40
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.53 E-value=60 Score=34.60 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=51.7
Q ss_pred cCCCCCCCCCCC--CCcCccccCCCCCCChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHH
Q 013480 372 SSSSRNGTISEP--PPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLEL 434 (442)
Q Consensus 372 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~l 434 (442)
...++.+-...+ .+.+.+- |++.+.+.++|+.|...=--|+.||+=-+.+|||+.+-+|++|
T Consensus 80 ~~~~d~egviepd~d~pq~MG-ds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l 143 (377)
T KOG1308|consen 80 DLEIDGEGVIEPDTDAPQEMG-DSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL 143 (377)
T ss_pred chhccCCCccccCCCcchhhc-hhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc
Confidence 344556666666 3666666 8999999999999999989999999999999999999999876
No 41
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=27.49 E-value=78 Score=28.24 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 399 PEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 399 ~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
.=-...|.+..+.|+.|++=.|+..+.++|.||.++|.
T Consensus 25 ~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~ 62 (124)
T TIGR00208 25 LMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQ 62 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33456788889999999999999999999999998874
No 42
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.73 E-value=2.2e+02 Score=28.24 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 013480 80 LEGFALNVFAKADKQDRA 97 (442)
Q Consensus 80 VEnFALkLFn~AD~qDRa 97 (442)
+++|+..|+.-+|+-+|+
T Consensus 89 ~~~~~~~LLpVlDnLerA 106 (214)
T PRK14163 89 VANLLSELLPVLDDVGRA 106 (214)
T ss_pred HHHHHHHHhhhHhHHHHH
Confidence 455555555555555555
No 43
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=26.64 E-value=88 Score=20.27 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.0
Q ss_pred cccccChHHHHHHHHHHHHH
Q 013480 415 ALAFDDVSVAVDYLKKSLEL 434 (442)
Q Consensus 415 al~~~dv~~a~~~l~~al~l 434 (442)
-..-.|.+.|++.|++||++
T Consensus 11 y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 11 YEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHTTSHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 34568999999999999986
No 44
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=26.59 E-value=62 Score=32.81 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhhcCCC
Q 013480 28 VAYYCRLYAMERGLRIPQ 45 (442)
Q Consensus 28 VAYyCRLYAlE~gLkl~~ 45 (442)
|=|.||.|-.|.+|+|..
T Consensus 180 IwfLcR~Y~A~eal~MGl 197 (282)
T COG0447 180 IWFLCRQYDAEEALDMGL 197 (282)
T ss_pred hhhhhhhccHHHHHhcCc
Confidence 679999999999999876
No 45
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.16 E-value=1e+02 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCchhHHHHHHH
Q 013480 103 NTAKTFYAASIFFEILNQF-GALQPDLEEKQKY 134 (442)
Q Consensus 103 ~taK~F~aAs~LfEVL~~F-GeLddDi~eK~KY 134 (442)
.+.+.+-+|.-|-||.+.. |.|+.||++.+|.
T Consensus 113 ~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~ 145 (683)
T PF08580_consen 113 SVKKQVEIAMEWEELWNDVLGDLDNEIEECIRL 145 (683)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777665 7777776544443
No 46
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=26.12 E-value=1.9e+02 Score=26.83 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-HHhhh--cCCchhHHHHHHHHHHhHHHHHHHHH
Q 013480 85 LNVFAKADKQDRAGRADLNTAKTFYAASIFFE-ILNQF--GALQPDLEEKQKYAAWKAADIRKAMK 147 (442)
Q Consensus 85 LkLFn~AD~qDRaG~~tk~taK~F~aAs~LfE-VL~~F--GeLddDi~eK~KYAKwKAa~I~KaLK 147 (442)
..||..|....+.|+ |..|...|+ |...| |+..+..+-++-|+-|+..+.-+++.
T Consensus 11 ~~ly~~a~~~l~~~~--------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a 68 (142)
T PF13512_consen 11 QELYQEAQEALQKGN--------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIA 68 (142)
T ss_pred HHHHHHHHHHHHhCC--------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 457778888888865 455566666 55554 88888888888888887655555443
No 47
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=26.03 E-value=1.8e+02 Score=26.81 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhhhcccCCh
Q 013480 54 SLLVSLMNQLEKDKKSLKLGP 74 (442)
Q Consensus 54 ~FL~~LLD~LEk~Ke~l~dd~ 74 (442)
..|..||-+||++|..|.++.
T Consensus 54 ~~l~~llkqLEkeK~~Le~ql 74 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQL 74 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999998776654
No 48
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.02 E-value=2.8e+02 Score=27.97 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHhhhhhccc------CChh-HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhc
Q 013480 50 KTTNSLLVSLMNQLEKDKKSLK------LGPE-DSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG 122 (442)
Q Consensus 50 kE~~~FL~~LLD~LEk~Ke~l~------dd~~-a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FG 122 (442)
...+.-|+.++|.||..-+.|. +..+ -++=-+.-.|+||...|.+.|.- ..++--|.---.++++|+.--
T Consensus 7 ~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~l---lkla~eq~k~e~~m~~Lea~V 83 (272)
T KOG4552|consen 7 RSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTL---LKLAPEQQKREQLMRTLEAHV 83 (272)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHH---HHHhHhHHHHHHHHHHHHHHH
Confidence 4467788899999996433321 1110 01111235677777777766551 134444444455666665543
Q ss_pred CC-chhHHHHH----------HHHHHhHHHHHHHHHcCC
Q 013480 123 AL-QPDLEEKQ----------KYAAWKAADIRKAMKEGR 150 (442)
Q Consensus 123 eL-ddDi~eK~----------KYAKwKAa~I~KaLKeGe 150 (442)
|. |++|++=+ .-|-|+|..=+|.||+.+
T Consensus 84 EkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~ 122 (272)
T KOG4552|consen 84 EKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAE 122 (272)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 33443222 233455555555566554
No 49
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=25.68 E-value=2.8e+02 Score=33.83 Aligned_cols=42 Identities=19% Similarity=0.063 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 013480 74 PEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFF 115 (442)
Q Consensus 74 ~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~Lf 115 (442)
..++.+||+.|+++|+.....+++..++|-+.+.+.-+..+=
T Consensus 857 n~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~ 898 (1330)
T KOG0949|consen 857 NTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRAR 898 (1330)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999888888888777555443
No 50
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.50 E-value=1.1e+02 Score=24.34 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=30.3
Q ss_pred hHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 401 KISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 401 ~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
-+.+|.+.++-||.+=+-.+...|++.+++|+++|.
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 466788888888888888889999999999999875
No 51
>KOG4256 consensus Kinetochore component [Cell cycle control, cell division, chromosome partitioning]
Probab=25.50 E-value=1e+03 Score=29.72 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=26.0
Q ss_pred HHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhc
Q 013480 57 VSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRA 97 (442)
Q Consensus 57 ~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRa 97 (442)
++|+|.+..+.-.+..+..-.+|+|+||-++..+|-.+|.+
T Consensus 933 IdLiDlekaedcllllksLp~aeaek~AeriI~~ar~a~qe 973 (2209)
T KOG4256|consen 933 IDLIDLEKAEDCLLLLKSLPIAEAEKFAERIIHMARHADQE 973 (2209)
T ss_pred HHHHHHHhhhhhhhccccCCHHHHHHHHHHHHHHHHhhccc
Confidence 34444333332233445667899999999999988766643
No 52
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.46 E-value=2.6e+02 Score=29.33 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-HHhhhc
Q 013480 79 HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFE-ILNQFG 122 (442)
Q Consensus 79 yVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfE-VL~~FG 122 (442)
++......|+.+|.+.-.+|+++..+++.|.+=-.+.+ -|..+|
T Consensus 236 ~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g 280 (379)
T PF09670_consen 236 LYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYG 280 (379)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36667788999999999999999999999986555554 333454
No 53
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=25.15 E-value=5.2e+02 Score=23.82 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchh----------hHHHHHHHHHHHh---hhhhccc----C
Q 013480 10 LLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKT----------TNSLLVSLMNQLE---KDKKSLK----L 72 (442)
Q Consensus 10 ~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE----------~~~FL~~LLD~LE---k~Ke~l~----d 72 (442)
.+..|+....--|+.--++-|.||+.+--..-+...++.... .|. ++-|.+.++ ...+.+. +
T Consensus 3 ~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk-~~Rl~k~l~~l~~~~~~~~~~~~d 81 (223)
T PF05648_consen 3 HFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARK-LFRLGKFLPMLQAARKYIKKKPSD 81 (223)
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHH-HHHHHccHHHHHHHHHhhccCCcc
Confidence 355666666666676788999999986544332111000011 111 122222222 2222211 1
Q ss_pred Ch-hHHHHHHHHHHHHHHHHHHHh---hcCCCCH-------HHHHHHHHHHHHHHHHhhhcC
Q 013480 73 GP-EDSLHLEGFALNVFAKADKQD---RAGRADL-------NTAKTFYAASIFFEILNQFGA 123 (442)
Q Consensus 73 d~-~a~ayVEnFALkLFn~AD~qD---RaG~~tk-------~taK~F~aAs~LfEVL~~FGe 123 (442)
.. .-...+.+..+-+|.-+|+-- +.|-.+. .....||.+++++.++..+-+
T Consensus 82 ~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~~~~~~~~s~~~W~~~l~~~l~~~~~~ 143 (223)
T PF05648_consen 82 QVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKSKKKWSRWSNRFWFASLVLSLVRDLRE 143 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122344555555666666543 2222221 356789999999987777633
No 54
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.05 E-value=3.5e+02 Score=21.38 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~ 120 (442)
+-|..++.+|...|+.|+....+.---.++-.|+.+++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~ 44 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKV 44 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 456778899999999998776665544555555566653
No 55
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.85 E-value=1.1e+02 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 402 ISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 402 i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
+.+|...++-||.+=+-.+.+.|++....|+++|.
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLL 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56777788888887777888999999999998874
No 56
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=24.73 E-value=1e+02 Score=34.54 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=47.3
Q ss_pred HHHHhhhhhccc-CChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH--HHhhhcCCchhH-----HHH
Q 013480 60 MNQLEKDKKSLK-LGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFE--ILNQFGALQPDL-----EEK 131 (442)
Q Consensus 60 LD~LEk~Ke~l~-dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfE--VL~~FGeLddDi-----~eK 131 (442)
||-+|+.|.+-+ .+.......|..|+.+|+.-|+.+.+..|..- +.- +.|-. -...|=...++. +.+
T Consensus 256 ld~se~~k~ar~klq~l~n~~FeeL~mD~yDEvdRRE~eavW~~t--qnh---sal~a~~~tvpFLP~nP~~SAtRNQgR 330 (669)
T KOG0818|consen 256 LDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLAT--QNH---SALVTETTTVPFLPVNPEYSATRNQGR 330 (669)
T ss_pred hhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhhhhhHHhhh--ccc---hhhcccCccccccCCCchhhhhhhhhh
Confidence 566777665432 34456678899999999999988877544330 000 11110 112233344443 778
Q ss_pred HHHHHHhHHHHH
Q 013480 132 QKYAAWKAADIR 143 (442)
Q Consensus 132 ~KYAKwKAa~I~ 143 (442)
+|.|||.+.+..
T Consensus 331 QKLArFn~~eFt 342 (669)
T KOG0818|consen 331 QKLARFNAHEFA 342 (669)
T ss_pred HHHhhcCHHHHH
Confidence 899999987643
No 57
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.36 E-value=3.1e+02 Score=30.01 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=4.3
Q ss_pred CCCCCCC-CC
Q 013480 291 SQPYHHQ-YS 299 (442)
Q Consensus 291 ~~~~~~~-~~ 299 (442)
.+.|.+| |+
T Consensus 399 ~~q~~~q~ys 408 (462)
T KOG2199|consen 399 RAQYPSQSYS 408 (462)
T ss_pred ccccCcccCC
Confidence 3444445 55
No 58
>PRK13689 hypothetical protein; Provisional
Probab=24.10 E-value=4.1e+02 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.3
Q ss_pred CCCchhhHHHHHHHHHHHhhhhhc
Q 013480 46 GERTKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 46 ~srdkE~~~FL~~LLD~LEk~Ke~ 69 (442)
+..++-+.+.+.+|++-|||-|+-
T Consensus 6 KYsd~qvE~il~el~~VLeKH~Ap 29 (75)
T PRK13689 6 KYSDEQVEQLLAELLAVLEKHKAP 29 (75)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCC
Confidence 456788999999999999998764
No 59
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.90 E-value=3.4e+02 Score=22.33 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHHHhhhcCCchhH----HHHHHHHHHhHHHHHHHHHc
Q 013480 81 EGFALNVFAKADKQDRAGRADLNTAKTFYAASI-FFEILNQFGALQPDL----EEKQKYAAWKAADIRKAMKE 148 (442)
Q Consensus 81 EnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~-LfEVL~~FGeLddDi----~eK~KYAKwKAa~I~KaLKe 148 (442)
+.-|..++.+|-..|++|++...+. .|.-|.. |+.+|+. +-++.. .+|++=..=+|-.|.+-|+.
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~-~Y~~aie~l~~~lk~--e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALV-CYQEGIDLLMQVLKG--TKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999998777663 3333333 3334443 333322 33333233355566665653
No 60
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=23.64 E-value=1.5e+02 Score=19.55 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHhhhhhhcccccChHHHHHHHHHHHH
Q 013480 406 HKAARFAVGALAFDDVSVAVDYLKKSLE 433 (442)
Q Consensus 406 ~k~~~~a~~al~~~dv~~a~~~l~~al~ 433 (442)
+..|=+|++.|.= +.|++-|.++|+
T Consensus 2 R~~Aa~aLg~igd---~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD---PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHhc
Confidence 3445556665543 889999999986
No 61
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=23.49 E-value=91 Score=23.61 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=25.6
Q ss_pred hhHHHHHHHhhhhhhcccccChHHHHHHHHH
Q 013480 400 EKISEAHKAARFAVGALAFDDVSVAVDYLKK 430 (442)
Q Consensus 400 ~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~ 430 (442)
+.|.-+...-+-|-.|-.||+|.+--.+|++
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~E 33 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRE 33 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5677788888899999999999998888875
No 62
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=23.28 E-value=3e+02 Score=27.97 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc-CCCCH-HHHHHH----HHHHHHHHHHhhhcCCchhH-----HHHHHHHHHhHHHHH
Q 013480 75 EDSLHLEGFALNVFAKADKQDRA-GRADL-NTAKTF----YAASIFFEILNQFGALQPDL-----EEKQKYAAWKAADIR 143 (442)
Q Consensus 75 ~a~ayVEnFALkLFn~AD~qDRa-G~~tk-~taK~F----~aAs~LfEVL~~FGeLddDi-----~eK~KYAKwKAa~I~ 143 (442)
.+..|+.+.--.|+..++.+.-. ..++. .+.+.+ +.-.++-.||+.||...++- -.+.|.|+|.|..|.
T Consensus 161 Ls~~~~~~~L~~il~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~~~vl~~~~~~~~~~~~~~~Ld~~ki~~~~a~~lL 240 (325)
T PF09724_consen 161 LSPSYLFEILDLILTSAVEESWDLDQFPVEEVVEALEEDEYPREVVEHVLRKFGTREDDDDSWWKLDEDKICRWFAIQLL 240 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHhcccCCCHHHHHHHHHHhCCCccCCCceEEcCHHHHHHHHHHHHH
Confidence 35566666666666766665521 23333 333333 34566667999999765541 577899999999999
Q ss_pred HHHHcC
Q 013480 144 KAMKEG 149 (442)
Q Consensus 144 KaLKeG 149 (442)
++.+.+
T Consensus 241 ~~~~~~ 246 (325)
T PF09724_consen 241 KAHASS 246 (325)
T ss_pred HhcccC
Confidence 977744
No 63
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.30 E-value=7.6e+02 Score=25.28 Aligned_cols=54 Identities=19% Similarity=0.379 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhc-----------CCchhHHHHHHHHHHh
Q 013480 77 SLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG-----------ALQPDLEEKQKYAAWK 138 (442)
Q Consensus 77 ~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FG-----------eLddDi~eK~KYAKwK 138 (442)
...|.||.+--|...+..++. .++-.|..|+--|+.|. ..+|...=|+-|.+|-
T Consensus 147 ~k~V~nfv~~kf~~l~~~E~q--------~m~elakmFL~~lN~W~le~ps~~~~~~~~~d~~~YkinYtRWl 211 (252)
T PF06466_consen 147 EKAVTNFVLYKFSHLPQKEWQ--------TMYELAKMFLHCLNHWKLEAPSQRRQRSNAEDQSAYKINYTRWL 211 (252)
T ss_pred HHHHHHHHHHHccCCCcHHHH--------HHHHHHHHHHHHHhhccCCChHHHHhhcCcchHHHHHHHHHHHH
Confidence 377888887666544443333 33444444555555552 1233446778888884
No 64
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=22.12 E-value=1.2e+02 Score=29.51 Aligned_cols=84 Identities=21% Similarity=0.200 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcC-------
Q 013480 51 TTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGA------- 123 (442)
Q Consensus 51 E~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGe------- 123 (442)
.-++|..=||+.|= ......|+.+|+..|-=+..+. |....+++..+..+.+-|++... +.
T Consensus 66 TWk~Y~~FLL~TlP--------~~tr~~Y~~Ki~~~i~~w~~~g---~~lpde~i~~L~~~~~~~~~~~~-~~~t~~~~~ 133 (181)
T PF11922_consen 66 TWKSYAEFLLDTLP--------EKTREHYRNKIAVSIRWWRKKG---GCLPDETIQELEEAGIPIEVNGK-NYRTDKKPV 133 (181)
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHhcCCceeeccc-ccccccCCc
Confidence 34566666666662 3347889999887654444443 78888999999999998888765 21
Q ss_pred ----Cch-hHHHHHHHHHHhHHHHHHH-HHc
Q 013480 124 ----LQP-DLEEKQKYAAWKAADIRKA-MKE 148 (442)
Q Consensus 124 ----Ldd-Di~eK~KYAKwKAa~I~Ka-LKe 148 (442)
++| |++..++.--|| +|-|| |||
T Consensus 134 r~~~~~D~~i~~~k~iPswk--Ric~~ilKN 162 (181)
T PF11922_consen 134 RMEYPDDIDIENFKDIPSWK--RICKCILKN 162 (181)
T ss_pred cccCCCccCccccccCchHH--HHHHHHHcc
Confidence 121 567888888998 78888 454
No 65
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.32 E-value=4.9e+02 Score=23.58 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhh-cCCch--
Q 013480 50 KTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQF-GALQP-- 126 (442)
Q Consensus 50 kE~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~F-GeLdd-- 126 (442)
.++..++..|+..|++. . .||.--||+|...+...-+. .|-..+.+. +..+-.|..| |..|+
T Consensus 34 ~~~~ei~d~L~kRL~~~-~---------~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~----~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 34 GSCQELLEYLLKRLKRS-S---------PHVKLKVLKIIKHLCEKGNS-DFKRELQRN----SAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHHHHHHHhcCC-C---------CcchHHHHHHHHHHHhhCCH-HHHHHHHHh----HHHHHHHHHcCCCCCccc
Confidence 45666666666666542 1 67777788888887665432 233333333 3455667778 44443
Q ss_pred --hHHHHHHHHHHhHHHHHHHHHc
Q 013480 127 --DLEEKQKYAAWKAADIRKAMKE 148 (442)
Q Consensus 127 --Di~eK~KYAKwKAa~I~KaLKe 148 (442)
+.-+++ +=.|.++.++|-+
T Consensus 99 Gd~~~~~V---R~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKV---REEAQELIKAIFS 119 (122)
T ss_pred CcchhHHH---HHHHHHHHHHHhc
Confidence 333332 3345677777653
No 66
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.98 E-value=1.1e+02 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 402 ISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 402 i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
...|.+..+.|..|++=.|++.+..+|.||.++|+
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~ 60 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT 60 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46777888888888888889999999999988875
No 67
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=20.94 E-value=1.5e+03 Score=27.41 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=16.5
Q ss_pred CCCCCCCCCcccccccCCCCC
Q 013480 189 DSDPSSQFPDRLDHYSANVSP 209 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~ 209 (442)
++++.+.|-+||-.-++|...
T Consensus 137 ssdpkdidqdnrstSpsipSP 157 (982)
T PF03154_consen 137 SSDPKDIDQDNRSTSPSIPSP 157 (982)
T ss_pred CCCccccccccccCCCCCCCc
Confidence 678888888888887777644
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.77 E-value=2.5e+02 Score=32.09 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 013480 80 LEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFE 116 (442)
Q Consensus 80 VEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfE 116 (442)
..+-||.+|++|..-|.. +...+|.+|.+||.
T Consensus 538 ~~d~AL~~~~~A~~ld~k-----n~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPK-----NPLCKYHRASILFS 569 (638)
T ss_pred hhhHHHHHHHHHHhcCCC-----CchhHHHHHHHHHh
Confidence 346789999999999988 88899999999994
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=20.74 E-value=91 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013480 81 EGFALNVFAKADKQDRAGRADLNTAKTFYA 110 (442)
Q Consensus 81 EnFALkLFn~AD~qDRaG~~tk~taK~F~a 110 (442)
+.+|..||..||+ ...|+.+..=...||-
T Consensus 20 ~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 20 DEYARQLFQECDK-SQSGRLEGEEFEEFYK 48 (51)
T ss_dssp HHHHHHHHHHH-S-SSSSEBEHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCCCccHHHHHHHHH
Confidence 4588899999988 4567777766666663
No 70
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=20.66 E-value=4.4e+02 Score=29.51 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=34.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHH-----HhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 013480 70 LKLGPEDSLHLEGFALNVFAKADK-----QDRAGRADLNTAKTFYAASIFFEILNQ 120 (442)
Q Consensus 70 l~dd~~a~ayVEnFALkLFn~AD~-----qDRaG~~tk~taK~F~aAs~LfEVL~~ 120 (442)
+..++.+..|+-+|++.+|.+... +.+.-+.-..+++.|.+..-++++|+.
T Consensus 170 le~G~Ldi~~L~~fvl~ll~~lCAPaRDe~V~~l~~itdvV~~~R~Ilq~l~lMK~ 225 (513)
T KOG1981|consen 170 LESGTLDISYLSEFVLDLLSRLCAPARDEEVAKLRSITDVVDGFRGILQLLELMKL 225 (513)
T ss_pred HHcCCchHHHHHHHHHHHHHHhcCCcccHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999988642 222222223788888877777766654
No 71
>PRK14147 heat shock protein GrpE; Provisional
Probab=20.54 E-value=2.9e+02 Score=26.29 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.8
Q ss_pred HcCCCCCC
Q 013480 147 KEGRKPVP 154 (442)
Q Consensus 147 KeGe~P~P 154 (442)
|.|..+..
T Consensus 112 ~~Gv~~i~ 119 (172)
T PRK14147 112 DNGLTLLD 119 (172)
T ss_pred HCCCEEeC
Confidence 34655443
Done!