Query 013480
Match_columns 442
No_of_seqs 139 out of 283
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:22:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 100.0 6.8E-56 2.3E-60 411.3 17.4 160 1-162 5-172 (183)
2 2rkk_A Vacuolar protein sortin 100.0 1.1E-44 3.6E-49 332.5 14.8 134 9-144 4-164 (168)
3 2rkl_A Vacuolar protein sortin 99.6 1.6E-16 5.4E-21 121.2 3.3 41 397-437 12-52 (53)
4 1wfd_A Hypothetical protein 15 70.0 12 0.00042 30.5 6.8 69 78-148 9-81 (93)
5 2cpt_A SKD1 protein, vacuolar 67.6 49 0.0017 28.1 10.4 68 80-148 14-85 (117)
6 2v6y_A AAA family ATPase, P60 58.8 23 0.00078 28.3 6.3 41 80-120 7-47 (83)
7 2w2u_A Hypothetical P60 katani 55.2 39 0.0013 27.1 7.1 43 79-121 14-56 (83)
8 2v6x_A Vacuolar protein sortin 52.7 42 0.0014 26.4 6.9 66 81-148 10-79 (85)
9 2pbe_A AAD6, aminoglycoside 6- 45.9 20 0.00068 34.8 4.7 44 103-150 240-289 (294)
10 3h0g_A DNA-directed RNA polyme 45.9 4.3 0.00015 48.7 0.0 8 91-98 1378-1385(1752)
11 1vdy_A Hypothetical protein (R 43.9 47 0.0016 29.3 6.4 71 79-154 64-136 (140)
12 4a5x_A MITD1, MIT domain-conta 42.7 58 0.002 26.2 6.3 65 82-148 14-82 (86)
13 2jr2_A UPF0352 protein CPS_261 41.6 54 0.0018 26.6 5.7 58 44-109 4-61 (76)
14 1hji_B NUN-protein; bacterioph 40.7 26 0.00088 22.7 3.0 20 129-149 7-26 (26)
15 1eg3_A Dystrophin; EF-hand lik 34.1 71 0.0024 30.8 6.5 15 31-45 64-78 (261)
16 1twf_A B220, DNA-directed RNA 34.1 8.5 0.00029 46.2 0.0 15 75-89 1343-1357(1733)
17 2a9u_A Ubiquitin carboxyl-term 31.8 2.7E+02 0.0091 24.5 9.5 54 59-117 18-71 (144)
18 2jpq_A UPF0352 protein VP2129; 27.5 1.5E+02 0.0051 24.4 6.3 25 44-68 4-28 (83)
19 2p4w_A Transcriptional regulat 27.5 1.1E+02 0.0037 27.9 6.2 74 51-142 126-200 (202)
20 2juw_A UPF0352 protein SO_2176 27.3 1.5E+02 0.0052 24.2 6.3 26 44-69 4-29 (80)
21 3iqc_A FLIS, flagellar protein 27.1 50 0.0017 28.5 3.7 37 400-436 31-67 (131)
22 3f6n_A Virion-associated prote 25.8 1.2E+02 0.0041 26.7 5.7 55 50-104 12-66 (129)
23 1vh6_A Flagellar protein FLIS; 25.7 54 0.0019 28.9 3.7 44 393-436 21-64 (145)
24 2jrx_A UPF0352 protein YEJL; h 25.3 1.5E+02 0.0051 24.4 5.9 25 44-68 4-28 (83)
25 1vdy_A Hypothetical protein (R 24.4 24 0.00084 31.2 1.2 11 134-144 64-74 (140)
26 3f3f_C Nucleoporin NUP85; stru 24.1 6.9E+02 0.024 26.8 12.7 120 27-151 172-322 (570)
27 2ekk_A UBA domain from E3 ubiq 23.8 48 0.0016 23.5 2.5 22 406-429 23-44 (47)
28 2juz_A UPF0352 protein HI0840; 23.7 1.9E+02 0.0065 23.6 6.2 26 44-69 4-29 (80)
29 1elw_A TPR1-domain of HOP; HOP 23.3 53 0.0018 23.7 2.7 16 419-434 52-67 (118)
30 2a9u_A Ubiquitin carboxyl-term 22.7 1.7E+02 0.0058 25.8 6.3 40 58-97 99-141 (144)
31 2xze_A STAM-binding protein; h 22.7 1.5E+02 0.0052 25.9 6.0 69 2-70 24-110 (146)
32 3bvo_A CO-chaperone protein HS 21.4 1.4E+02 0.0048 27.5 5.8 30 39-68 117-146 (207)
33 2w2u_A Hypothetical P60 katani 20.9 63 0.0022 25.8 2.9 40 397-436 11-50 (83)
34 3ghg_A Fibrinogen alpha chain; 20.7 1.2E+02 0.0043 32.4 5.8 14 123-136 149-162 (562)
35 3jz0_A Lincosamide nucleotidyl 20.5 1.2E+02 0.0041 29.5 5.3 82 52-136 198-286 (287)
36 1orj_A Flagellar protein FLIS; 20.4 94 0.0032 26.9 4.1 36 401-436 25-64 (130)
37 1xwr_A Regulatory protein CII; 20.3 1.2E+02 0.0042 25.1 4.6 49 16-69 28-84 (97)
38 2l6j_A TPR repeat-containing p 20.2 66 0.0023 23.4 2.8 16 419-434 52-67 (111)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=100.00 E-value=6.8e-56 Score=411.25 Aligned_cols=160 Identities=42% Similarity=0.685 Sum_probs=143.5
Q ss_pred CCCCCcch--hhhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhccc------C
Q 013480 1 MASETEPA--KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLK------L 72 (442)
Q Consensus 1 m~s~~~P~--K~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~------d 72 (442)
|+++.+|. |.|.|||+||+||++++|+|||||||||+|+||+++. +++|+++|++.|||+||++|+++. +
T Consensus 5 ~~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~--~~~e~~~f~~~LLd~LE~~K~~~~~~dai~~ 82 (183)
T 2lxl_A 5 APLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKKQLGDNEAITQ 82 (183)
T ss_dssp CCCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCS--CCTTHHHHHHHHHHHHHHHHHHHCSCHHHHC
T ss_pred CCCCCCChhHHhHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhccc--CChhHHHHHHHHHHHHHHHHHhccchhHHhh
Confidence 67888887 6699999999999999999999999999999998864 689999999999999999988764 4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCC
Q 013480 73 GPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKP 152 (442)
Q Consensus 73 d~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P 152 (442)
+.++++|||+||++||++||++||+|+++++|+|+||||++|||||++||+|++|+++|+|||||||+||+||||+|++|
T Consensus 83 ~~~~~ayve~fAlklF~~Ad~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~l~~e~~~k~KYAKwkA~~I~kalk~G~~P 162 (183)
T 2lxl_A 83 EIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETP 162 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHCCCCHHHHHhHHHHHHhHHHHHHHHHCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 013480 153 VPGPPGGGED 162 (442)
Q Consensus 153 ~Pgpp~~ee~ 162 (442)
+|||++++++
T Consensus 163 ~pgp~~~~~~ 172 (183)
T 2lxl_A 163 QAGPVGIEED 172 (183)
T ss_dssp C---------
T ss_pred CCCCCCCccc
Confidence 9999988775
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-44 Score=332.54 Aligned_cols=134 Identities=20% Similarity=0.323 Sum_probs=125.1
Q ss_pred hhhHHHHHHHHhhhhc-CChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhcc-----------------
Q 013480 9 KLLLPYLQRADELQKH-EPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSL----------------- 70 (442)
Q Consensus 9 K~I~PfLkrA~ELE~~-dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l----------------- 70 (442)
+.|.|||+||+||+++ +|+|||||||||||+||++ +.+++|++.|++.|||+||++|+++
T Consensus 4 ~~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~--~~~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~ 81 (168)
T 2rkk_A 4 SNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSE--EDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMN 81 (168)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTT
T ss_pred chHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHhccccccccccccchhhhh
Confidence 6799999999999999 9999999999999999987 6789999999999999999998765
Q ss_pred ---cCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHHHHHHHhhhcCCc-----hhHHHHHHHHHHhHHH
Q 013480 71 ---KLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYA-ASIFFEILNQFGALQ-----PDLEEKQKYAAWKAAD 141 (442)
Q Consensus 71 ---~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~a-As~LfEVL~~FGeLd-----dDi~eK~KYAKwKAa~ 141 (442)
.|+.++++|||+|||+||++||++||+|++|++++|+||| |.+|++||++||+++ +|+++|+|||||||++
T Consensus 82 ~~i~d~~~a~a~ve~FAlklF~~Ad~~drag~~~k~~~k~fy~ta~~F~avl~~fg~~~~~~~~~e~~~k~KYaKw~aa~ 161 (168)
T 2rkk_A 82 TLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSK 161 (168)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999999996 555778999999999 9999999999999999
Q ss_pred HHH
Q 013480 142 IRK 144 (442)
Q Consensus 142 I~K 144 (442)
|+|
T Consensus 162 I~K 164 (168)
T 2rkk_A 162 LAK 164 (168)
T ss_dssp HHT
T ss_pred HHH
Confidence 999
No 3
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=99.61 E-value=1.6e-16 Score=121.18 Aligned_cols=41 Identities=37% Similarity=0.606 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhcC
Q 013480 397 PPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTN 437 (442)
Q Consensus 397 ~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~~ 437 (442)
|..++|++||||||||||||+||||.||+++|++||+||++
T Consensus 12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~~ 52 (53)
T 2rkl_A 12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999984
No 4
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=69.96 E-value=12 Score=30.47 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHHc
Q 013480 78 LHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMKE 148 (442)
Q Consensus 78 ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLKe 148 (442)
.-+++-|..++.+|-..|.+|++...+..--.++-.|+.+|+.- -+++ +.+|++=..=+|-.|.+.|+.
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e--~~~~~k~~l~~K~~eYl~RAE~LK~~l~~ 81 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT--KESSKRCVLRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567889999999999999998888866666666666777643 3332 344444444466777777653
No 5
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.62 E-value=49 Score=28.13 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHHc
Q 013480 80 LEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMKE 148 (442)
Q Consensus 80 VEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLKe 148 (442)
+++-|..|+.+|-..|.+|++...+..--.++-.|+.+|+.- ..++. +++|.+=.-=||-.|...|.+
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e-~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~ 85 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYE-AQGDKAKQSIRAKCTEYLDRAEKLKEYLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899999999999998887765555566666677642 13332 344444444477777777753
No 6
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=58.77 E-value=23 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 013480 80 LEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120 (442)
Q Consensus 80 VEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~ 120 (442)
+++-|..++.+|-..|++|++...+.---.+.-.|+.+|+.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~ 47 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVL 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999888875555555555566654
No 7
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.23 E-value=39 Score=27.07 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhh
Q 013480 79 HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQF 121 (442)
Q Consensus 79 yVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~F 121 (442)
-+++-|..++.+|-..|++|++...+.---.++-.|+.+|+.-
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e 56 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLY 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHC
Confidence 3567888999999999999998888755555555555666553
No 8
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=52.73 E-value=42 Score=26.43 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHHc
Q 013480 81 EGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMKE 148 (442)
Q Consensus 81 EnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLKe 148 (442)
++-|..++.+|-..|.+|++...+..--.++-.|+.+|+.- .++. +.+|.+=.-=||-.|...|+.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e--~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYE--KNPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999988887765555555666676543 3332 334444444456666666643
No 9
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=45.92 E-value=20 Score=34.79 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH-----HHhhhc-CCchhHHHHHHHHHHhHHHHHHHHHcCC
Q 013480 103 NTAKTFYAASIFFE-----ILNQFG-ALQPDLEEKQKYAAWKAADIRKAMKEGR 150 (442)
Q Consensus 103 ~taK~F~aAs~LfE-----VL~~FG-eLddDi~eK~KYAKwKAa~I~KaLKeGe 150 (442)
++.+++.++..||. |...+| +.+.+.+++.+|.+ +|.+.+|+|-
T Consensus 240 ~i~~al~~~~~LF~~~a~~va~~~~~~y~~~~~~~~~yl~----~~~~~~~~~~ 289 (294)
T 2pbe_A 240 EMWKSLFTCYALFRKYSKAVSEGLAYKYPDYDEGITKYTE----GIYCSVKEGH 289 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHH----HHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHHHHhhccc
Confidence 67788888888874 444555 44555555556654 5677788874
No 10
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.86 E-value=4.3 Score=48.72 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=3.4
Q ss_pred HHHHhhcC
Q 013480 91 ADKQDRAG 98 (442)
Q Consensus 91 AD~qDRaG 98 (442)
||-.-+.|
T Consensus 1378 aD~MT~~G 1385 (1752)
T 3h0g_A 1378 CDVMTSRG 1385 (1752)
T ss_dssp HHHHTSSS
T ss_pred HHHhccCC
Confidence 44444444
No 11
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=43.93 E-value=47 Score=29.34 Aligned_cols=71 Identities=11% Similarity=-0.001 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH--HHHhHHHHHHHHHcCCCCCC
Q 013480 79 HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKY--AAWKAADIRKAMKEGRKPVP 154 (442)
Q Consensus 79 yVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KY--AKwKAa~I~KaLKeGe~P~P 154 (442)
++.--||+|...+.+ .| +...++....-+.++..|..|.-.++.+.-+-.| -+=+|.+|.++|...+.+.+
T Consensus 64 ~vk~KaL~lL~yL~~---~G--s~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 64 IVKQKALRLIKYAVG---KS--GSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSG 136 (140)
T ss_dssp HHHHHHHHHHHHHTT---TS--CHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred ceeehHHHHHHHHHH---hC--CHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCC
Confidence 466778888888764 33 4577777777777888999996555433222222 23457899999986654443
No 12
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=42.73 E-value=58 Score=26.18 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHH--HHHHHH--hHHHHHHHHHc
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEK--QKYAAW--KAADIRKAMKE 148 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK--~KYAKw--KAa~I~KaLKe 148 (442)
.-|..++.+|-..|.+|++...+.---.++-.|+.+|+ .+.++..++. .|...| +|-.|.+.|..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk--~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK--GTKDNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677889999999999887766443344444445554 3455543221 233333 45566665553
No 13
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=41.56 E-value=54 Score=26.58 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013480 44 PQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFY 109 (442)
Q Consensus 44 ~~~srdkE~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~ 109 (442)
..+..++.+.+.+.+|++-|||-|+-. ..+-..+-|.+-.|++..-...|. .+++.|-
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~Ap~---DLSLMvLGN~vTnlln~V~~~qR~-----~iAe~Fa 61 (76)
T 2jr2_A 4 VSKYSNERVEKIIQDLLDVLVKEEVTP---DLALMCLGNAVTNIIAQVPESKRV-----AVVDNFT 61 (76)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHH
Confidence 345578899999999999999987632 123344445555555533333343 4555554
No 14
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=40.67 E-value=26 Score=22.70 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHcC
Q 013480 129 EEKQKYAAWKAADIRKAMKEG 149 (442)
Q Consensus 129 ~eK~KYAKwKAa~I~KaLKeG 149 (442)
..+++.|+|. .+|.-+||+|
T Consensus 7 rdrrriarwe-kriayalkng 26 (26)
T 1hji_B 7 RDRRRIARWE-KRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHH-HHHHHHHHCC
T ss_pred hhHHHHHHHH-HHHHHHHhcC
Confidence 5678899998 7899999987
No 15
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=34.13 E-value=71 Score=30.76 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcCCC
Q 013480 31 YCRLYAMERGLRIPQ 45 (442)
Q Consensus 31 yCRLYAlE~gLkl~~ 45 (442)
+|++-++|+.+.+++
T Consensus 64 a~klr~lq~~~~l~l 78 (261)
T 1eg3_A 64 AMKLRRLQKALCLDL 78 (261)
T ss_dssp HHHHHHHHHHTTGGG
T ss_pred HHhhHhhhhhheece
Confidence 467888887776543
No 16
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=34.13 E-value=8.5 Score=46.22 Aligned_cols=15 Identities=27% Similarity=0.111 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH
Q 013480 75 EDSLHLEGFALNVFA 89 (442)
Q Consensus 75 ~a~ayVEnFALkLFn 89 (442)
+++.++.+-..++|.
T Consensus 1343 AAR~~Ii~Ei~~V~~ 1357 (1733)
T 1twf_A 1343 AGRAALYKEVYNVIA 1357 (1733)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456666666666664
No 17
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=31.77 E-value=2.7e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 013480 59 LMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEI 117 (442)
Q Consensus 59 LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEV 117 (442)
=|+.|++.. .+.|......++...|.+||..|+.-.++|. ..++|..=.-|+++
T Consensus 18 sle~L~k~~-~~~d~~ipl~~y~rsa~~L~r~A~~y~~EGd----~E~AYilymRy~~L 71 (144)
T 2a9u_A 18 SLKDLNKKT-EVKPEKISTKSYVHSALKIFKTAEECRLDRD----EERAYVLYMKYVTV 71 (144)
T ss_dssp SHHHHHGGG-CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred CHHHHHHhc-ccccccCcHHHHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHH
Confidence 377777754 3444444556778899999999998888884 44444433334343
No 18
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=27.48 E-value=1.5e+02 Score=24.35 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhh
Q 013480 44 PQGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 44 ~~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
..+..++.+.+.+.+|++-|||-|+
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~A 28 (83)
T 2jpq_A 4 TSKYTDEQVEKILAEVALVLEKHAA 28 (83)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHHHHHHHhcCC
Confidence 3455788999999999999999876
No 19
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=27.45 E-value=1.1e+02 Score=27.92 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcC-CchhHH
Q 013480 51 TTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGA-LQPDLE 129 (442)
Q Consensus 51 E~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGe-LddDi~ 129 (442)
+.+.+|..|.+.|+..++....-...+.-+..+...|..++....-. -+-.+++-||+ +..++.
T Consensus 126 ~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~---------------~~~~~~~~~~~~~~~~~~ 190 (202)
T 2p4w_A 126 ELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQ---------------IIEEIFRDIEKILPPGYA 190 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHhcccCcHHHH
Confidence 34455555555555444333223345667777777777777665332 14446666664 667777
Q ss_pred HHHHHHHHhHHHH
Q 013480 130 EKQKYAAWKAADI 142 (442)
Q Consensus 130 eK~KYAKwKAa~I 142 (442)
+.+ |||-.+|
T Consensus 191 ~~~---~~~~~~~ 200 (202)
T 2p4w_A 191 RSL---KEKFLNI 200 (202)
T ss_dssp HHH---HTTC---
T ss_pred HHH---HHHHHhc
Confidence 666 7876554
No 20
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=27.30 E-value=1.5e+02 Score=24.17 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhhc
Q 013480 44 PQGERTKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 44 ~~~srdkE~~~FL~~LLD~LEk~Ke~ 69 (442)
..+..++.+.+.+.+|++-|||-|+-
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~Ap 29 (80)
T 2juw_A 4 QSKYSNTQVESLIAEILVVLEKHKAP 29 (80)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCC
Confidence 34557889999999999999998763
No 21
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=27.13 E-value=50 Score=28.54 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 400 EKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 400 ~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
=-+..|.+.++.|..|++=.|+..+...|.||.++|+
T Consensus 31 mLydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 31 MLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999998875
No 22
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=25.78 E-value=1.2e+02 Score=26.70 Aligned_cols=55 Identities=13% Similarity=-0.054 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 013480 50 KTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNT 104 (442)
Q Consensus 50 kE~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~t 104 (442)
.|++.-+.+|+..++...+.+++...-..-+|..|-||....-++.+...+++.+
T Consensus 12 ~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~CeCnkei 66 (129)
T 3f6n_A 12 SEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDCPCNKEI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 3444555555555555444444432345678888888877777777776666654
No 23
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=25.66 E-value=54 Score=28.89 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=35.9
Q ss_pred CCCCCChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 393 SNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 393 ~~~~~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
++.|...=-+..|.+.++.|..|++=.|+..+...|.||.++|+
T Consensus 21 sP~~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 21 TPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34444444567799999999999999999999999999998875
No 24
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=25.34 E-value=1.5e+02 Score=24.37 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhh
Q 013480 44 PQGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 44 ~~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
..+..++.+.+.+.+|++-|||-|+
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~A 28 (83)
T 2jrx_A 4 ISRYSDEQVEQLLAELLNVLEKHKA 28 (83)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHHHHhcCC
Confidence 3455788999999999999999876
No 25
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.42 E-value=24 Score=31.18 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=5.5
Q ss_pred HHHHhHHHHHH
Q 013480 134 YAAWKAADIRK 144 (442)
Q Consensus 134 YAKwKAa~I~K 144 (442)
+-|+||..|++
T Consensus 64 ~vk~KaL~lL~ 74 (140)
T 1vdy_A 64 IVKQKALRLIK 74 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred ceeehHHHHHH
Confidence 34555555544
No 26
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=24.06 E-value=6.9e+02 Score=26.79 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHHhhcCCCC--CCchh--hHHHHHHHHHHHhhhhh--------c-ccC------C-----hhHHHHHHH
Q 013480 27 LVAYYCRLYAMERGLRIPQG--ERTKT--TNSLLVSLMNQLEKDKK--------S-LKL------G-----PEDSLHLEG 82 (442)
Q Consensus 27 VVAYyCRLYAlE~gLkl~~~--srdkE--~~~FL~~LLD~LEk~Ke--------~-l~d------d-----~~a~ayVEn 82 (442)
+.-|+..+.+++-.-.+.-. .+.++ -..|+..||+|+-...- + +.. . ..-..||-.
T Consensus 172 ~~~l~~~l~Il~cl~a~~F~~d~~~~~~~~~~~~e~Ll~WVN~~d~eP~~E~~~eVm~~~~~~~~~~P~eHp~FW~~v~~ 251 (570)
T 3f3f_C 172 FYELEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFWKLLNQ 251 (570)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSTTSCGGGGHHHHHHHHHHHHHHHCCCSCHHHHHHHTTC----CCSSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHhccCCCCHHHHHHHHhcccccCCCCCCCCccHHHHHHH
Confidence 45577777666654443211 22322 45899999999875221 1 221 1 123467777
Q ss_pred HHHH-HHHHHHHHhhcCCCCH----HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhH--HHHHHHHHcCCC
Q 013480 83 FALN-VFAKADKQDRAGRADL----NTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKA--ADIRKAMKEGRK 151 (442)
Q Consensus 83 FALk-LFn~AD~qDRaG~~tk----~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKA--a~I~KaLKeGe~ 151 (442)
..++ +|..|-...+.-.+-. .-...|.++.+|.++|+..--.. +.++..||. .++...+.+++.
T Consensus 252 LvLRGl~~qA~~~L~~s~~~~~L~~~~~~~~~~i~dli~LL~~yP~~S-----~~~fr~WK~~~~e~r~~l~~~~~ 322 (570)
T 3f3f_C 252 LVLRGLLSQAIGCIERSDLLPYLSDTCAVSFDAVSDSIELLKQYPKDS-----SSTFREWKNLVLKLSQAFGSSAT 322 (570)
T ss_dssp HHHTTCHHHHHHHHTTTTTTHHHHHSCHHHHHHHHHHHHHHTTCCSSC-----HHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcccHHHHHHHHHhcccchhhcccChHHHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHHHHHHhccccc
Confidence 7776 6777777766544311 12345666778888888774443 558889996 456777887664
No 27
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.76 E-value=48 Score=23.47 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=17.7
Q ss_pred HHHhhhhhhcccccChHHHHHHHH
Q 013480 406 HKAARFAVGALAFDDVSVAVDYLK 429 (442)
Q Consensus 406 ~k~~~~a~~al~~~dv~~a~~~l~ 429 (442)
.+.|+.|+.+-+ ||+.|++.|-
T Consensus 23 ~~~a~~AL~~~~--n~e~A~~~L~ 44 (47)
T 2ekk_A 23 REHAMEALLNTS--TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHSC--SHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHH
Confidence 467888888885 8999998874
No 28
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=23.67 E-value=1.9e+02 Score=23.61 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=21.6
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhhc
Q 013480 44 PQGERTKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 44 ~~~srdkE~~~FL~~LLD~LEk~Ke~ 69 (442)
..+..++.+.+.+.+|++-|||-|+-
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~Ap 29 (80)
T 2juz_A 4 HSKYSDAQLSAIVNDMIAVLEKHKAP 29 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCC
Confidence 34557889999999999999998763
No 29
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=23.26 E-value=53 Score=23.68 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=8.4
Q ss_pred cChHHHHHHHHHHHHH
Q 013480 419 DDVSVAVDYLKKSLEL 434 (442)
Q Consensus 419 ~dv~~a~~~l~~al~l 434 (442)
.|.+.|++.+++++++
T Consensus 52 ~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 52 GDYQKAYEDGCKTVDL 67 (118)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4455555555555554
No 30
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=22.74 E-value=1.7e+02 Score=25.85 Aligned_cols=40 Identities=28% Similarity=0.182 Sum_probs=23.9
Q ss_pred HHHHHHhhhhhcccCC---hhHHHHHHHHHHHHHHHHHHHhhc
Q 013480 58 SLMNQLEKDKKSLKLG---PEDSLHLEGFALNVFAKADKQDRA 97 (442)
Q Consensus 58 ~LLD~LEk~Ke~l~dd---~~a~ayVEnFALkLFn~AD~qDRa 97 (442)
..|+.||..|..|... ...+.|+++-+.+.=.....++|.
T Consensus 99 ~vl~~lE~LK~~L~~rYe~~e~~~~l~~k~~~~~~~~~~~~~~ 141 (144)
T 2a9u_A 99 KAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3488888888877643 245566676665554444444443
No 31
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.68 E-value=1.5e+02 Score=25.94 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCcchhhhHHHHHHHHhhhhc--------CChhhHHHHHHHHHHhh-cCCCCC--Cc---hhhHHHHHHHHHH----H
Q 013480 2 ASETEPAKLLLPYLQRADELQKH--------EPLVAYYCRLYAMERGL-RIPQGE--RT---KTTNSLLVSLMNQ----L 63 (442)
Q Consensus 2 ~s~~~P~K~I~PfLkrA~ELE~~--------dPVVAYyCRLYAlE~gL-kl~~~s--rd---kE~~~FL~~LLD~----L 63 (442)
+.+-.+-..|..||+.|.++-+. |..-||+..+=++.+++ ++..|. ++ .+.+.++..|... |
T Consensus 24 ~~~v~~~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~~~~~~~l 103 (146)
T 2xze_A 24 AVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKA 103 (146)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHHHTHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHHHHhHHHH
Q ss_pred hhhhhcc
Q 013480 64 EKDKKSL 70 (442)
Q Consensus 64 Ek~Ke~l 70 (442)
|..|..|
T Consensus 104 E~LK~~L 110 (146)
T 2xze_A 104 EELKAEL 110 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 32
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=21.36 E-value=1.4e+02 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=18.0
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHHHhhhhh
Q 013480 39 RGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 39 ~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
.|..+.....+.....||++.|++-|...+
T Consensus 117 ~G~~~~~e~~~~~d~~fLme~me~~E~le~ 146 (207)
T 3bvo_A 117 HGIEIPERTDYEMDRQFLIEIMEINEKLAE 146 (207)
T ss_dssp TTCCCCSSCSSSSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 355443222233345799999999886654
No 33
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=20.91 E-value=63 Score=25.83 Aligned_cols=40 Identities=28% Similarity=0.123 Sum_probs=32.1
Q ss_pred CChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 397 PPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 397 ~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
|..+-+.+|-++++-||..=+=.+...|+..+++||++|.
T Consensus 11 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 11 AQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4455677888888888887777788999999999998874
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.71 E-value=1.2e+02 Score=32.39 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=6.4
Q ss_pred CCchhHHHHHHHHH
Q 013480 123 ALQPDLEEKQKYAA 136 (442)
Q Consensus 123 eLddDi~eK~KYAK 136 (442)
.|.-||.-|++|||
T Consensus 149 RLEvDIdiqirsCK 162 (562)
T 3ghg_A 149 RLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcc
Confidence 34444444444444
No 35
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=20.51 E-value=1.2e+02 Score=29.51 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhhhhhcccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh-----hc-CCc
Q 013480 52 TNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ-----FG-ALQ 125 (442)
Q Consensus 52 ~~~FL~~LLD~LEk~Ke~l~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~-----FG-eLd 125 (442)
+++.|+.||.+.++.+.... ..-.|+|++.-.-.-+....--++---+++.+++.+|..||.-|.. +| +.+
T Consensus 198 ~r~~LL~ml~w~~g~~~~~~---~~~K~le~~L~~e~~~~l~~t~~~~~~~~iw~Al~~~~~LF~~la~~va~~~g~~yp 274 (287)
T 3jz0_A 198 LQKNTLQLIRMAEKNADNWL---NMSKNLEKEISLENYKKFAKTTARLDKVELFEAYKNSLLLVMDLQSHLIEQYNLKVT 274 (287)
T ss_dssp HHHHHHHHHHHHTTCCSSCT---TTTTTHHHHSCHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSC
T ss_pred HHHHHHHHHHHHHhhhcCCC---cccchHHHhCCHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45666777777766433222 2234555443211111111111111122788888888888854433 33 344
Q ss_pred hh-HHHHHHHHH
Q 013480 126 PD-LEEKQKYAA 136 (442)
Q Consensus 126 dD-i~eK~KYAK 136 (442)
.+ .++-.+|.|
T Consensus 275 ~~~~~~~~~y~~ 286 (287)
T 3jz0_A 275 HDILERLLNYIS 286 (287)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 44 344456654
No 36
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=20.42 E-value=94 Score=26.89 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=29.9
Q ss_pred hHHHHHHHhhhhhhcccccCh-HHH---HHHHHHHHHHhc
Q 013480 401 KISEAHKAARFAVGALAFDDV-SVA---VDYLKKSLELLT 436 (442)
Q Consensus 401 ~i~~a~k~~~~a~~al~~~dv-~~a---~~~l~~al~ll~ 436 (442)
-+..|.+.++.|..|++=.|+ ..+ ...|.||.++|+
T Consensus 25 Lydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~ 64 (130)
T 1orj_A 25 LYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIIS 64 (130)
T ss_dssp HHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888999 888 888999988874
No 37
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=20.31 E-value=1.2e+02 Score=25.09 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHhhhhcCChhhHH--------HHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhc
Q 013480 16 QRADELQKHEPLVAYY--------CRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 16 krA~ELE~~dPVVAYy--------CRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~ 69 (442)
+.|+.+.-++--|++| |.+-++- +|++ ...|...+.-.+.+.|++.|..
T Consensus 28 ~vA~~iGV~~StISR~k~~~~~~~~~lLa~l-~l~v----~~~e~~~~~k~~~~~l~~~k~p 84 (97)
T 1xwr_A 28 KTAEAVGVDKSQISRWKRDWIPKFSMLLAVL-EWGV----VDDDMARLARQVAAILTNKKRP 84 (97)
T ss_dssp HHHHHHTCCTTTHHHHHHHHHHHHHHHHHHH-HHCC----CHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHhCCCHHHHHHHHhhhHHHHHHHHHHH-hcCC----ChHHHHHHHHHHHHHHhccCCC
Confidence 3566677777788885 8887775 7766 3356777777788878666543
No 38
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=20.24 E-value=66 Score=23.38 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=7.4
Q ss_pred cChHHHHHHHHHHHHH
Q 013480 419 DDVSVAVDYLKKSLEL 434 (442)
Q Consensus 419 ~dv~~a~~~l~~al~l 434 (442)
.|.+.|++.+++||++
T Consensus 52 g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 52 GEYTQAIQMCQQGLRY 67 (111)
T ss_dssp TCHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHh
Confidence 3444444444444443
Done!