Query 013480
Match_columns 442
No_of_seqs 139 out of 283
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 11:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013480.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013480hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wfda_ a.7.14.1 (A:) Hypothet 72.6 3.6 0.00026 31.7 6.1 64 82-147 13-80 (93)
2 d1wr0a1 a.7.14.1 (A:5-81) Vacu 49.2 19 0.0014 26.4 6.1 38 82-119 9-46 (77)
3 d1vh6a_ a.24.19.1 (A:) Flagell 36.4 14 0.001 28.3 3.7 36 401-436 10-45 (102)
4 d1wfda_ a.7.14.1 (A:) Hypothet 34.4 16 0.0012 27.8 3.7 37 400-436 10-46 (93)
5 d1wr0a1 a.7.14.1 (A:5-81) Vacu 26.6 18 0.0013 26.4 2.6 38 399-436 5-42 (77)
6 d2pbea1 a.160.1.5 (A:138-282) 26.1 34 0.0025 28.3 4.6 49 13-69 14-66 (145)
7 d2jpqa1 a.284.1.1 (A:1-75) Hyp 24.3 91 0.0066 23.3 6.3 25 45-69 5-29 (75)
8 d1vg5a_ a.5.2.1 (A:) Rhomboid 24.3 1E+02 0.0073 22.4 6.6 33 396-429 27-65 (73)
9 d1nzea_ a.24.18.1 (A:) Oxygen- 23.4 1.5E+02 0.011 22.8 8.0 75 48-122 33-112 (112)
10 d2jxca1 a.39.1.6 (A:121-215) E 22.8 5 0.00036 30.5 -1.3 65 85-151 13-80 (95)
11 d2jrxa1 a.284.1.1 (A:1-75) Unc 21.2 98 0.0071 23.1 5.9 24 45-68 5-28 (75)
12 d2v7fa1 a.4.5.84 (A:2-150) Rib 21.1 1.6E+02 0.012 24.4 8.0 70 27-96 68-144 (149)
No 1
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=72.63 E-value=3.6 Score=31.73 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchh----HHHHHHHHHHhHHHHHHHHH
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPD----LEEKQKYAAWKAADIRKAMK 147 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddD----i~eK~KYAKwKAa~I~KaLK 147 (442)
.-|+.|+.+|-..|.+|++...+..--.++..|+.+|+.. .+++ +.+|++-+.=||-.|.+-|.
T Consensus 13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e--~~~~~k~~l~~k~~eYl~RAE~LK~~l~ 80 (93)
T d1wfda_ 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT--KESSKRCVLRTKISGYMDRAENIKKYLD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999998877755555555566677643 3433 56666666667777766554
No 2
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.24 E-value=19 Score=26.38 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 013480 82 GFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILN 119 (442)
Q Consensus 82 nFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~ 119 (442)
+-|+.++.+|-..|.+|++...+.----++..|+.+|+
T Consensus 9 ~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~ 46 (77)
T d1wr0a1 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK 46 (77)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45889999999999999998887444444444556666
No 3
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=36.45 E-value=14 Score=28.31 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 401 KISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 401 ~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
-...+.+.++.|+.|++=.|...+.+++.||+++|+
T Consensus 10 Lyd~~i~~l~~a~~ai~~~d~~~~~~~~~ka~~Ii~ 45 (102)
T d1vh6a_ 10 LYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 45 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356788888888888888999999999999999875
No 4
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.36 E-value=16 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=33.0
Q ss_pred hhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 400 EKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 400 ~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
+.+..|..+++-||..=+=.+...|++.+.+||++|-
T Consensus 10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 46 (93)
T d1wfda_ 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999884
No 5
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.59 E-value=18 Score=26.45 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=31.8
Q ss_pred hhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhc
Q 013480 399 PEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436 (442)
Q Consensus 399 ~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~ 436 (442)
.+.|.+|...++-||..=+=.+...|++.+.+||++|-
T Consensus 5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~ 42 (77)
T d1wr0a1 5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL 42 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45788999999999987777788889999999998763
No 6
>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=26.11 E-value=34 Score=28.28 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCC---CC-chhhHHHHHHHHHHHhhhhhc
Q 013480 13 PYLQRADELQKHEPLVAYYCRLYAMERGLRIPQG---ER-TKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 13 PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~---sr-dkE~~~FL~~LLD~LEk~Ke~ 69 (442)
-|....+|| |||-.|++.-+.+...- .. ..-+|..|+.||.+--..+..
T Consensus 14 eF~~ccNEF--------ww~s~~VaKgL~R~El~yA~~~~~~~~R~~Ll~ml~W~i~~~~~ 66 (145)
T d2pbea1 14 EFDDCCNEF--------WMVSTYVVKGLARNEILFAIDHLNEIVRPNLLRMMAWHIASQKG 66 (145)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455555554 78899988777654331 11 123677788888876665543
No 7
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=24.32 E-value=91 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.0
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhhc
Q 013480 45 QGERTKTTNSLLVSLMNQLEKDKKS 69 (442)
Q Consensus 45 ~~srdkE~~~FL~~LLD~LEk~Ke~ 69 (442)
.+..+..+.+.+.+|++-|||-++-
T Consensus 5 SKYs~~qvE~il~el~~vLeKh~Ap 29 (75)
T d2jpqa1 5 SKYTDEQVEKILAEVALVLEKHAAS 29 (75)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCC
Confidence 3457889999999999999998763
No 8
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.32 E-value=1e+02 Score=22.36 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCChhhHHHHH------HHhhhhhhcccccChHHHHHHHH
Q 013480 396 QPPPEKISEAH------KAARFAVGALAFDDVSVAVDYLK 429 (442)
Q Consensus 396 ~~~~~~i~~a~------k~~~~a~~al~~~dv~~a~~~l~ 429 (442)
.+..+.|++.+ +.|+.|+.+-+. ||+.|+++|-
T Consensus 27 ~~~ee~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Ll 65 (73)
T d1vg5a_ 27 AASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILM 65 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHH
T ss_pred CcCHHHHHHHHHhCCCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 34577777765 467778877665 7999999874
No 9
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=23.40 E-value=1.5e+02 Score=22.82 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=45.5
Q ss_pred CchhhHHHHHHHHHHHhhhhhccc--CChhHHHHHHHHHHHHHHHHHHHhhcCC-CCH-HHHHHHHHHHHHHH-HHhhhc
Q 013480 48 RTKTTNSLLVSLMNQLEKDKKSLK--LGPEDSLHLEGFALNVFAKADKQDRAGR-ADL-NTAKTFYAASIFFE-ILNQFG 122 (442)
Q Consensus 48 rdkE~~~FL~~LLD~LEk~Ke~l~--dd~~a~ayVEnFALkLFn~AD~qDRaG~-~tk-~taK~F~aAs~LfE-VL~~FG 122 (442)
.=.+++.+|..-|..|-.+-..|. .....+.-+.+.|.+||+..++-|.+.+ -+. ...+.|-.+...|+ ||...|
T Consensus 33 ~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~LD~Aar~kd~~~a~~~Y~~t~~~ld~~la~lg 112 (112)
T d1nzea_ 33 AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 112 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346777777777777776554442 2345677778889999998888887643 222 33344444444443 666544
No 10
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.82 E-value=5 Score=30.48 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH--HHHhhhcCCchhHHHHHHHHHH-hHHHHHHHHHcCCC
Q 013480 85 LNVFAKADKQDRAGRADLNTAKTFYAASIFF--EILNQFGALQPDLEEKQKYAAW-KAADIRKAMKEGRK 151 (442)
Q Consensus 85 LkLFn~AD~qDRaG~~tk~taK~F~aAs~Lf--EVL~~FGeLddDi~eK~KYAKw-KAa~I~KaLKeGe~ 151 (442)
.++|+..| ++.|..+...++.|+..+-|= +|-++|...|.+-.-++.|-.+ .|.++..+.++|+.
T Consensus 13 ~~~F~~~D--~~~G~i~~~el~~~l~~~gl~~~~L~~Iw~~~D~~~dG~l~~~EF~~a~~Li~~~~~g~~ 80 (95)
T d2jxca1 13 DAIFDSLS--PVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEKEP 80 (95)
T ss_dssp HHHHHHTC--CBTTEEEHHHHHHHHTTSSCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhC--CCCCceeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCeEcHHHHHHHHHHHHHHHcCCC
Confidence 46888888 567998888777776553221 1333343322222222222222 35677777777873
No 11
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=21.17 E-value=98 Score=23.12 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.4
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhh
Q 013480 45 QGERTKTTNSLLVSLMNQLEKDKK 68 (442)
Q Consensus 45 ~~srdkE~~~FL~~LLD~LEk~Ke 68 (442)
.+..+..+.+.+.+|++-|||-++
T Consensus 5 SKYs~~qvE~il~el~~vLeKh~A 28 (75)
T d2jrxa1 5 SRYSDEQVEQLLAELLNVLEKHKA 28 (75)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHhcCC
Confidence 345678899999999999999876
No 12
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=21.05 E-value=1.6e+02 Score=24.35 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhh--cccC-----ChhHHHHHHHHHHHHHHHHHHHhh
Q 013480 27 LVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK--SLKL-----GPEDSLHLEGFALNVFAKADKQDR 96 (442)
Q Consensus 27 VVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke--~l~d-----d~~a~ayVEnFALkLFn~AD~qDR 96 (442)
=|.-.++.|--.+=--..+.-..+.....+...|.+||+.+= ...+ -..++..+.+.|-+|+..++.+..
T Consensus 68 Gv~~Lr~~YGg~k~rG~~P~h~~~~Sg~iiR~~LQqLE~~glVek~~~~GR~lT~~G~~~LD~iA~~v~~~~~~~~P 144 (149)
T d2v7fa1 68 GIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEIIP 144 (149)
T ss_dssp CHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCCCCCCCCCcCCCccHHHHHHHHHHHhCCCeeEcCCCCcEECHHHHHHHHHHHHHHHHHHHHhCc
Confidence 466667777432211112223456778999999999998652 1112 147999999999999998887643
Done!