Query 013482
Match_columns 442
No_of_seqs 225 out of 809
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 6.5E-40 1.4E-44 348.7 18.8 309 64-427 103-419 (590)
2 PF02893 GRAM: GRAM domain; I 99.8 8.6E-19 1.9E-23 137.0 5.6 67 68-134 1-69 (69)
3 smart00568 GRAM domain in gluc 99.7 1.9E-16 4.1E-21 120.7 6.9 59 75-133 1-60 (61)
4 KOG4347 GTPase-activating prot 98.6 2.2E-08 4.7E-13 105.9 3.9 105 64-172 7-115 (671)
5 KOG1032 Uncharacterized conser 98.2 1.6E-07 3.4E-12 101.3 -1.1 258 65-393 248-526 (590)
6 PF14470 bPH_3: Bacterial PH d 97.8 0.00046 9.9E-09 56.6 12.3 85 76-163 1-87 (96)
7 PF14844 PH_BEACH: PH domain a 97.8 8.6E-05 1.9E-09 62.6 7.6 86 81-167 1-105 (106)
8 cd01201 Neurobeachin Neurobeac 96.3 0.023 5.1E-07 48.0 8.1 89 80-169 1-104 (108)
9 PF11696 DUF3292: Protein of u 93.4 0.26 5.7E-06 53.6 8.0 83 85-170 520-634 (642)
10 PF10698 DUF2505: Protein of u 93.1 2.6 5.6E-05 38.1 13.1 129 286-427 4-138 (159)
11 PF11605 Vps36_ESCRT-II: Vacuo 88.7 1.3 2.8E-05 36.3 5.9 60 76-135 10-75 (89)
12 KOG4471 Phosphatidylinositol 3 86.3 2.8 6.1E-05 45.2 8.1 101 67-169 27-134 (717)
13 PF06115 DUF956: Domain of unk 85.8 3.7 8E-05 35.3 7.2 78 89-169 16-96 (118)
14 PF00407 Bet_v_1: Pathogenesis 85.4 19 0.00042 32.2 12.2 116 283-417 6-122 (151)
15 COG4687 Uncharacterized protei 78.7 3.8 8.2E-05 34.8 4.5 66 94-160 21-87 (122)
16 cd08904 START_STARD6-like Lipi 75.8 73 0.0016 30.1 13.7 128 284-425 49-184 (204)
17 cd08905 START_STARD1-like Chol 74.1 54 0.0012 30.9 11.8 113 285-417 53-180 (209)
18 cd08868 START_STARD1_3_like Ch 73.7 57 0.0012 30.5 11.8 120 285-417 52-179 (208)
19 PF06713 bPH_4: Bacterial PH d 73.6 20 0.00044 28.0 7.3 64 102-169 5-72 (74)
20 smart00683 DM16 Repeats in sea 70.7 16 0.00035 27.2 5.7 51 80-131 1-53 (55)
21 cd00177 START Lipid-binding ST 65.7 99 0.0021 27.5 12.3 120 285-418 43-167 (193)
22 PF04283 CheF-arch: Chemotaxis 61.1 27 0.00058 33.5 6.8 36 94-133 24-59 (221)
23 cd01220 PH_CDEP Chondrocyte-de 60.4 42 0.00091 27.9 7.0 61 96-157 17-81 (99)
24 cd08869 START_RhoGAP C-termina 60.3 1.3E+02 0.0029 27.9 11.3 116 285-418 48-170 (197)
25 cd01264 PH_melted Melted pleck 60.2 26 0.00057 29.4 5.7 58 100-157 24-85 (101)
26 PF07289 DUF1448: Protein of u 60.1 72 0.0016 32.6 9.8 100 75-175 18-129 (339)
27 PF07289 DUF1448: Protein of u 59.8 51 0.0011 33.6 8.7 99 75-176 150-256 (339)
28 cd08873 START_STARD14_15-like 58.9 1.8E+02 0.0039 28.2 13.0 136 285-435 81-224 (235)
29 PF08567 TFIIH_BTF_p62_N: TFII 57.9 24 0.00053 28.1 5.0 63 87-155 6-78 (79)
30 cd01244 PH_RasGAP_CG9209 RAS_G 54.2 43 0.00093 27.8 6.1 53 101-154 27-80 (98)
31 cd07816 Bet_v1-like Ligand-bin 51.8 1.7E+02 0.0036 25.7 14.2 113 284-416 4-118 (148)
32 COG4256 HemP Hemin uptake prot 50.6 38 0.00081 25.6 4.5 55 36-103 7-62 (63)
33 cd07821 PYR_PYL_RCAR_like Pyra 49.7 1.5E+02 0.0032 24.5 11.7 107 284-416 4-112 (140)
34 cd08876 START_1 Uncharacterize 48.8 2.1E+02 0.0045 26.0 14.9 130 284-430 44-180 (195)
35 smart00233 PH Pleckstrin homol 47.9 81 0.0017 23.9 6.7 63 99-163 22-90 (102)
36 KOG0526 Nucleosome-binding fac 45.5 77 0.0017 34.2 7.6 81 88-174 10-92 (615)
37 PF06017 Myosin_TH1: Myosin ta 44.9 95 0.0021 28.9 7.6 104 66-175 33-147 (199)
38 PF11687 DUF3284: Domain of un 43.5 2.1E+02 0.0045 24.5 11.7 98 285-413 3-100 (120)
39 PF00169 PH: PH domain; Inter 43.0 1.5E+02 0.0034 22.8 8.6 63 99-163 21-92 (104)
40 PF03703 bPH_2: Bacterial PH d 41.9 1E+02 0.0022 23.4 6.2 67 100-167 6-77 (80)
41 cd01233 Unc104 Unc-104 pleckst 38.7 2.2E+02 0.0047 23.3 8.4 67 100-168 23-92 (100)
42 cd01218 PH_phafin2 Phafin2 Pl 37.0 2.1E+02 0.0045 24.0 7.7 63 93-156 16-81 (104)
43 cd08874 START_STARD9-like C-te 32.8 4.3E+02 0.0092 24.9 14.5 121 284-416 48-176 (205)
44 cd08906 START_STARD3-like Chol 32.5 4.3E+02 0.0092 24.8 12.9 113 285-417 53-180 (209)
45 cd08871 START_STARD10-like Lip 31.6 4.4E+02 0.0095 24.7 12.4 50 365-417 121-174 (222)
46 PF05391 Lsm_interact: Lsm int 30.1 22 0.00047 21.2 0.4 11 64-74 9-19 (21)
47 smart00234 START in StAR and p 28.5 4.5E+02 0.0098 23.9 13.4 121 285-418 49-175 (206)
48 cd08907 START_STARD8-like C-te 27.0 4.6E+02 0.01 24.9 8.9 51 366-419 126-179 (205)
49 PF08512 Rtt106: Histone chape 26.0 3.6E+02 0.0079 21.9 8.3 73 86-169 4-83 (95)
50 cd00821 PH Pleckstrin homology 25.3 2.8E+02 0.0062 20.5 9.0 64 97-162 18-85 (96)
51 cd01257 PH_IRS Insulin recepto 24.8 2.9E+02 0.0064 22.9 6.5 50 106-156 31-85 (101)
52 cd08908 START_STARD12-like C-t 24.5 6E+02 0.013 24.0 13.0 116 285-418 56-177 (204)
53 cd01239 PH_PKD Protein kinase 23.8 2.4E+02 0.0052 24.4 5.8 40 115-154 36-79 (117)
54 cd01265 PH_PARIS-1 PARIS-1 ple 23.6 3.1E+02 0.0067 22.1 6.4 50 105-157 29-78 (95)
55 cd01254 PH_PLD Phospholipase D 23.2 3.3E+02 0.0072 23.1 6.8 62 100-161 38-110 (121)
56 PF03517 Voldacs: Regulator of 21.7 1.4E+02 0.003 26.2 4.2 34 98-133 1-37 (135)
57 KOG3238 Chloride ion current i 20.9 1E+02 0.0023 29.0 3.3 27 85-111 23-49 (216)
58 cd05018 CoxG Carbon monoxide d 20.8 4.9E+02 0.011 21.6 12.0 30 383-416 84-113 (144)
59 KOG3294 WW domain binding prot 20.6 84 0.0018 30.5 2.7 51 94-145 45-96 (261)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=6.5e-40 Score=348.69 Aligned_cols=309 Identities=29% Similarity=0.453 Sum_probs=236.7
Q ss_pred hHhhHHhhhhC--CCCCCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCc
Q 013482 64 TLRSEEYRQLF--RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN 141 (442)
Q Consensus 64 ~~~~~~f~~lF--~lp~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pn 141 (442)
.....+|...+ ++|++|.|+.+|+|+|+|.|++|||||++++||||||++|||+++++|||++|+.|+|.++++++||
T Consensus 103 ~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn 182 (590)
T KOG1032|consen 103 LLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPN 182 (590)
T ss_pred hhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCc
Confidence 55677777777 3999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCcccccccccCCCCCCCCccccccc
Q 013482 142 AIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIRE 221 (442)
Q Consensus 142 aI~I~t~~~~~~F~sF~~rd~~~~li~~~w~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~e~~~~~~~~~~s~~~~~~~~ 221 (442)
+|+|.|...+|+|++|.+||.+|.+|..+-+......+..- . ..+.... .....+ ++.+++
T Consensus 183 ~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~----~-------~~~~l~~-----~~~~~~---~~~~~~ 243 (590)
T KOG1032|consen 183 AIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPR----A-------DSDYLSS-----VEPEVN---DDQQGN 243 (590)
T ss_pred ceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCcc----c-------cchhccc-----CCCCcC---cccccc
Confidence 99999999999999999999999988554433322111100 0 0000000 000000 000000
Q ss_pred ccCCCCCCCCCCcCCCcccccCCCcccCccCccCCCCCCCCCCCCCCCC-----CCCCCCCCccceeeeeeEEecCHHHH
Q 013482 222 EDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIE-----NSDAPKIPECYTKVAETNFQMKVEDF 296 (442)
Q Consensus 222 ~~ls~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~p~~~~~~~~v~e~~f~isv~~l 296 (442)
.+.. ..+.. .+ ..++...+ +.. -..+...-++.+..|.+++..|
T Consensus 244 ~~~~---~~~s~--~~-------------------------~s~~~~~~e~~~~~~~-~~~~~~~~v~~~~~~s~~~~~~ 292 (590)
T KOG1032|consen 244 VDNS---QSPSA--LQ-------------------------NSFDSPKEEELEHDFS-CSLSRLFGVLGRLPFSAPIGAF 292 (590)
T ss_pred cccC---CCccc--cc-------------------------cccCCCcccccccccc-cccccccccccccccccccccc
Confidence 0000 00000 00 00000000 000 0122233367889999999999
Q ss_pred HhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEecCCe-EEEEEEE
Q 013482 297 YSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSH-LVIETSQ 375 (442)
Q Consensus 297 F~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~~~~~-~vVe~~~ 375 (442)
|+++|+|+ .|+..+.+.++..++...+|.....+...|.++|++++..++|||.+.|..+|.+.+++... +.|..++
T Consensus 293 ~~~lf~d~--~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t 370 (590)
T KOG1032|consen 293 FSLLFGDN--TFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSET 370 (590)
T ss_pred ceeeccCc--ceeeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhhee
Confidence 99999976 58888999999999999999988878899999999999999999999999999998887555 7788899
Q ss_pred EeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeecccchhhHH
Q 013482 376 EVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLL 427 (442)
Q Consensus 376 ~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I~~ 427 (442)
.+++||||++|+|.+||+|.|.+. ..|+|+++.+|.|.|++|-++++++
T Consensus 371 ~~~~vps~~~f~v~~~y~i~~~~~---~~~~l~v~~~V~~~~~sw~~~~~~~ 419 (590)
T KOG1032|consen 371 LTPDVPSGDSFYVKTRYLISRAGS---NSCKLKVSTSVEWTKSSWDVPVSEI 419 (590)
T ss_pred ccCCccccceeeeeEEEEEEecCC---cceeecceeEEEeccCchhhccccc
Confidence 999999999999999999999865 6999999999999999999888854
No 2
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.75 E-value=8.6e-19 Score=136.96 Aligned_cols=67 Identities=39% Similarity=0.910 Sum_probs=48.5
Q ss_pred HHhhhhCCCCCCCeeeEEEEEEEee-cceeeeEEEEecceEEEEeccCCcee-EEEEeccccccccccc
Q 013482 68 EEYRQLFRLPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRAK 134 (442)
Q Consensus 68 ~~f~~lF~lp~~E~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~~~g~~~-k~~I~~~dI~~I~k~~ 134 (442)
++||++|+||.+|.|+.+|.|+|++ +++.+|+||||++||||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 4799999999999999999999998 89999999999999999999999888 9999999999999863
No 3
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.66 E-value=1.9e-16 Score=120.68 Aligned_cols=59 Identities=32% Similarity=0.649 Sum_probs=56.8
Q ss_pred CCCCCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCcee-EEEEecccccccccc
Q 013482 75 RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRA 133 (442)
Q Consensus 75 ~lp~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~-k~~I~~~dI~~I~k~ 133 (442)
+||++|+|+.+|.|+|+++++++||||||++||||+|+.+|+.+ +++||+.||.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 48999999999999999999999999999999999999999988 999999999999986
No 4
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.62 E-value=2.2e-08 Score=105.87 Aligned_cols=105 Identities=27% Similarity=0.417 Sum_probs=91.3
Q ss_pred hHhhHHhhhhCCCCCCCeeeEEEEEEEee---cceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccC
Q 013482 64 TLRSEEYRQLFRLPSEEVLVQDFNCAFQE---SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFP 140 (442)
Q Consensus 64 ~~~~~~f~~lF~lp~~E~li~~f~Cal~~---~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~p 140 (442)
+.++++| .+|+|| |+|..+-.|.++. +...+||||+|++|+||.|--.. -+.+++|+..|..|+|.+....++
T Consensus 7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~~ 82 (671)
T KOG4347|consen 7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLFT 82 (671)
T ss_pred hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccch
Confidence 5689999 999999 9999999999984 45689999999999999998654 579999999999999999778899
Q ss_pred cEEEEEeCC-eEEEEeecCCHHHHHHHHHHHHH
Q 013482 141 NAIEIFAAG-KKYFFASFLSRDEAFKLITDGWL 172 (442)
Q Consensus 141 naI~I~t~~-~~~~F~sF~~rd~~~~li~~~w~ 172 (442)
+.|.+.|.+ ..+.|..+.+|++.+--|...-.
T Consensus 83 ~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~~ 115 (671)
T KOG4347|consen 83 QLISLFTSNMVGMRFGGLTERLKLLSKLHLPPA 115 (671)
T ss_pred hhhHHhhcCcceEEecchhhHHHHHHHHhchHh
Confidence 999998875 68999999999987766655433
No 5
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=98.23 E-value=1.6e-07 Score=101.33 Aligned_cols=258 Identities=16% Similarity=0.218 Sum_probs=149.2
Q ss_pred HhhHHhhhhCCCCCCCeeeEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCc-EE
Q 013482 65 LRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AI 143 (442)
Q Consensus 65 ~~~~~f~~lF~lp~~E~li~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pn-aI 143 (442)
..+..|+..|++|..|.+..+|.|.+.+...++|+++++-...||++.+||..+++...|+++..++-.......+. ++
T Consensus 248 ~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~ 327 (590)
T KOG1032|consen 248 QSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGI 327 (590)
T ss_pred CCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccc
Confidence 36778999999999999999999999999999999999999999999999999999999999999887765433321 22
Q ss_pred EEEe--C-----------------CeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCccccccc
Q 013482 144 EIFA--A-----------------GKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKV 204 (442)
Q Consensus 144 ~I~t--~-----------------~~~~~F~sF~~rd~~~~li~~~w~~~~~~~~~~~e~~~~~~~~~s~~~~~~~~e~~ 204 (442)
...+ . .+.+.|..+... |+++........+ . +.... ...-.+..
T Consensus 328 ~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vp---s----~~~f~----v~~~y~i~--- 390 (590)
T KOG1032|consen 328 LLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVP---S----GDSFY----VKTRYLIS--- 390 (590)
T ss_pred eeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCcc---c----cceee----eeEEEEEE---
Confidence 2211 0 122233222221 2222221100000 0 00000 00000000
Q ss_pred ccCCCCCCCCcccccccccCCCCCCCCCCcCCCcccccCCCcccCccCccCCCCCCCCCCCCCCCCCCCCCCCCccceee
Q 013482 205 NCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKV 284 (442)
Q Consensus 205 ~~~~~~~~s~~~~~~~~~~ls~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~~~~~~~v 284 (442)
+..+. ..... ....+ .|....- .-.+.+.+..
T Consensus 391 ---------------~~~~~-----------~~~l~--------v~~~V------------~~~~~sw-~~~~~~~~~~- 422 (590)
T KOG1032|consen 391 ---------------RAGSN-----------SCKLK--------VSTSV------------EWTKSSW-DVPVSEIGSN- 422 (590)
T ss_pred ---------------ecCCc-----------ceeec--------ceeEE------------EeccCch-hhcccccccc-
Confidence 00000 00000 00000 0110000 0011111111
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~ 364 (442)
..++.+ .+|+-+|++. +-...-+...++..+.-++|.-...++..|+..|.---..++++....++..|...+.
T Consensus 423 ---~~k~lv-~~~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~i~~l~ 496 (590)
T KOG1032|consen 423 ---TLKDLV-EILEKLLENG--EELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDKREVTLLQVVVLV 496 (590)
T ss_pred ---chhhHH-HHHHHHHhcc--HHHHHhhcccccccccCCCccccCCCceeeeeccccccccccccccccceeEEEEEEe
Confidence 222222 3455567644 2234444455566666778995556788999998754555667777777777765544
Q ss_pred -cCCeEEEEEEEEeCCCCCCCceEEEEEEE
Q 013482 365 -RNSHLVIETSQEVHDVPYGDYFRVEGLWD 393 (442)
Q Consensus 365 -~~~~~vVe~~~~~~dVPygD~F~ve~r~~ 393 (442)
.+..|+++..+..+++|||++|.++.||.
T Consensus 497 ~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~ 526 (590)
T KOG1032|consen 497 PLKILWLLNTILFLHDVPFGSYFEVHERYR 526 (590)
T ss_pred hhhhhHHHHHHhhccCCCCccceeeehhhh
Confidence 44778899999999999999999999996
No 6
>PF14470 bPH_3: Bacterial PH domain
Probab=97.82 E-value=0.00046 Score=56.58 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCCCCeeeEEEEEEEee-cceeeeEEEEecceEEEEecc-CCceeEEEEeccccccccccccccccCcEEEEEeCCeEEE
Q 013482 76 LPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF 153 (442)
Q Consensus 76 lp~~E~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~~-~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~~~~ 153 (442)
|.++|.++....|.+.. .....|-+++|+..|-|+..- ++......|||++|.+|+..++ ++.+.|.|.++++.+.
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g--~~~~~i~i~~~~~~~~ 78 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG--ILGGKITIETNGEKIK 78 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc--ccccEEEEEECCEEEE
Confidence 56799999999999872 235679999999999999765 6678889999999999999874 5778999999999999
Q ss_pred EeecCCHHHH
Q 013482 154 FASFLSRDEA 163 (442)
Q Consensus 154 F~sF~~rd~~ 163 (442)
|.++ +.+++
T Consensus 79 i~~i-~k~~~ 87 (96)
T PF14470_consen 79 IDNI-QKGDV 87 (96)
T ss_pred EEEc-CHHHH
Confidence 9999 54443
No 7
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=97.78 E-value=8.6e-05 Score=62.64 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=61.3
Q ss_pred eeeEEEEEEEee-cceeeeEEEEecceEEEEec---------------cCCceeEEEEeccccccccccccccccCcEEE
Q 013482 81 VLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN---------------IFGFETKKIIPFYEVTAVRRAKTAGIFPNAIE 144 (442)
Q Consensus 81 ~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~---------------~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~ 144 (442)
+++-.+.|.+.. .....|+|.|++++|+|..+ .-.......+|+++|..|.+..- .+-++||+
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRy-llr~~AlE 79 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRY-LLRDTALE 79 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEE-TTEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHh-cCcceEEE
Confidence 467789999985 56789999999999999976 22335668899999999998864 45689999
Q ss_pred EEeCCeEEEEeecC---CHHHHHHHH
Q 013482 145 IFAAGKKYFFASFL---SRDEAFKLI 167 (442)
Q Consensus 145 I~t~~~~~~F~sF~---~rd~~~~li 167 (442)
|...+++=+|-.|. .||++|+.|
T Consensus 80 iF~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 80 IFFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 99876555555775 477777543
No 8
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=96.29 E-value=0.023 Score=48.02 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=67.0
Q ss_pred CeeeEEEEEEEee-cceeeeEEEEecceEEEEec----cCC-c---------eeEEEEeccccccccccccccccCcEEE
Q 013482 80 EVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN----IFG-F---------ETKKIIPFYEVTAVRRAKTAGIFPNAIE 144 (442)
Q Consensus 80 E~li~~f~Cal~~-~i~~~GrlYis~~~icF~S~----~~g-~---------~~k~~I~~~dI~~I~k~~~~~~~pnaI~ 144 (442)
|+++-+..|.+.. -.-..|+|=||.++|+|... .+. . .....+++++|..|-+..- .+-+.|++
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRy-lLr~~alE 79 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRY-LLQNTALE 79 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhh-hcccceEE
Confidence 5788889999985 45678999999999999952 121 1 1233799999999998864 46688999
Q ss_pred EEeCCeEEEEeecCCHHHHHHHHHH
Q 013482 145 IFAAGKKYFFASFLSRDEAFKLITD 169 (442)
Q Consensus 145 I~t~~~~~~F~sF~~rd~~~~li~~ 169 (442)
|.-.+..-+|-.|-+++.+.+.+..
T Consensus 80 iF~~d~~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 80 LFLASRTSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEEeCCceEEEEeCcHHHHHHHHhh
Confidence 9876655556689888877666653
No 9
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=93.40 E-value=0.26 Score=53.64 Aligned_cols=83 Identities=17% Similarity=0.374 Sum_probs=64.8
Q ss_pred EEEEEEeecceeeeEEEEe----cceEEEEeccC------------CceeEEEEeccccccccccccccc----------
Q 013482 85 DFNCAFQESILLQGHMYLF----VHFICFYSNIF------------GFETKKIIPFYEVTAVRRAKTAGI---------- 138 (442)
Q Consensus 85 ~f~Cal~~~i~~~GrlYis----~~~icF~S~~~------------g~~~k~~I~~~dI~~I~k~~~~~~---------- 138 (442)
.|.|-|+++ .|.+||+ .=.|||.+.-. .......||..||.+++|..+.+.
T Consensus 520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~ 596 (642)
T PF11696_consen 520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL 596 (642)
T ss_pred eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence 699999875 4999998 55799986411 123458899999999999876541
Q ss_pred ----cCcEEEEE-eC-CeEEEEeecCCHHHHHHHHHHH
Q 013482 139 ----FPNAIEIF-AA-GKKYFFASFLSRDEAFKLITDG 170 (442)
Q Consensus 139 ----~pnaI~I~-t~-~~~~~F~sF~~rd~~~~li~~~ 170 (442)
+-.|++|. +. ++.|.++....||+.|+.|..+
T Consensus 597 g~kEv~DGL~I~g~~~g~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 597 GEKEVVDGLVIVGDEPGQEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred CCcccccceEEeccCCCCEEEEEecchHHHHHHHHHhc
Confidence 22588888 54 7899999999999999988764
No 10
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=93.11 E-value=2.6 Score=38.06 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=81.7
Q ss_pred eeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeee-eec-----CCCceeeeeEEE
Q 013482 286 ETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI-KVY-----FGAKFGSCKETQ 359 (442)
Q Consensus 286 e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl-~~~-----iGpk~t~~~e~Q 359 (442)
...|+++++++|.+|.+. .|++.-++..+..+..+..-....++ ....+.=..|- ..| +-+..-.+.+++
T Consensus 4 ~~~~~~~~~~v~~~~~d~---~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE---DYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH---HHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 468999999999955544 48888888877766666666555443 22222222332 111 223334566666
Q ss_pred EEEEecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeecccchhhHH
Q 013482 360 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLL 427 (442)
Q Consensus 360 ~i~~~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I~~ 427 (442)
+..-.++..+........+ |....+.....++..+ .+|++.+.+.|+- |=.++.|||++
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~----~gt~~~~~g~v~v-~VPlvGgkiE~ 138 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG----GGTRLTVEGEVKV-KVPLVGGKIEK 138 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC----CCEEEEEEEEEEE-EEccccHHHHH
Confidence 6532345667666665555 5567799999998854 4788888887765 35678888865
No 11
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=88.66 E-value=1.3 Score=36.32 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCCCCe-eeEEEEEEEee---cc--eeeeEEEEecceEEEEeccCCceeEEEEecccccccccccc
Q 013482 76 LPSEEV-LVQDFNCAFQE---SI--LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT 135 (442)
Q Consensus 76 lp~~E~-li~~f~Cal~~---~i--~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~ 135 (442)
|-++|. +...-.+.|.. ++ .-.|++|+|.+.||+.-..-.....+.|++.+|..++...+
T Consensus 10 L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~g 75 (89)
T PF11605_consen 10 LEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAG 75 (89)
T ss_dssp --TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-S
T ss_pred cCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcc
Confidence 333444 44566777763 23 45899999999999986543333468999999999966643
No 12
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=2.8 Score=45.24 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=70.7
Q ss_pred hHHhhhhCCCCCCCee-eEEEEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCc--EE
Q 013482 67 SEEYRQLFRLPSEEVL-VQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN--AI 143 (442)
Q Consensus 67 ~~~f~~lF~lp~~E~l-i~~f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pn--aI 143 (442)
+......|.+=++|.+ -..|.|-+.. ...|.|+||+-.|.|.+.--+..-.+-+||.=|..|+|..++.-..| +|
T Consensus 27 ~~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L 104 (717)
T KOG4471|consen 27 DENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGL 104 (717)
T ss_pred cccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeE
Confidence 3346777874445555 4468888876 67899999999999998765555678899999999999874432223 78
Q ss_pred EEEeCCe---EEEEeecCC-HHHHHHHHHH
Q 013482 144 EIFAAGK---KYFFASFLS-RDEAFKLITD 169 (442)
Q Consensus 144 ~I~t~~~---~~~F~sF~~-rd~~~~li~~ 169 (442)
+|+.++. +|-|..+.. |-+.|+.|.+
T Consensus 105 ~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~ 134 (717)
T KOG4471|consen 105 EITCKDMRNLRCAFKQEEQCRRDWFERLNR 134 (717)
T ss_pred EEEeccccceeeecCcccccHHHHHHHHHH
Confidence 8877654 566666664 4355555544
No 13
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=85.82 E-value=3.7 Score=35.29 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=55.4
Q ss_pred EEeecceeeeEEEEecceEEEEeccCCceeEEEEecccccccccccc--ccccCcEEEEEeCC-eEEEEeecCCHHHHHH
Q 013482 89 AFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAAG-KKYFFASFLSRDEAFK 165 (442)
Q Consensus 89 al~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~--~~~~pnaI~I~t~~-~~~~F~sF~~rd~~~~ 165 (442)
.....+.-+|++.|-.+=+=||... ..+--+.|||++|..|...-. ...+|- ..|.|+. ++|.|++=-+. ++++
T Consensus 16 ts~~g~~~yGkimiGDkaFEFyn~~-n~~dyIQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~~G~f~Fsskd~k-~~Lk 92 (118)
T PF06115_consen 16 TSYLGLGKYGKIMIGDKAFEFYNDR-NVEDYIQIPWEEIDYVIASVSFKGKWIPR-FAIFTKKNGKFTFSSKDSK-KVLK 92 (118)
T ss_pred EEEecccccCeEEEcccceEeecCC-ChhhcEEeChhheeEEEEEEEECCCEEee-EEEEECCCCEEEEEECChH-HHHH
Confidence 3334566899999999999999764 235568999999999976543 134554 8888875 99999885443 3444
Q ss_pred HHHH
Q 013482 166 LITD 169 (442)
Q Consensus 166 li~~ 169 (442)
.|.+
T Consensus 93 ~~r~ 96 (118)
T PF06115_consen 93 AIRK 96 (118)
T ss_pred HHHH
Confidence 4443
No 14
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=85.38 E-value=19 Score=32.23 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=69.2
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHH-HHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEE
Q 013482 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 361 (442)
Q Consensus 283 ~v~e~~f~isv~~lF~llFsd~s~~f~~~~~-~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i 361 (442)
...|...++++++||.++-. ..+++.+.. +.....++.-+.|.. +|..|.++|.. -|| . ..-.|++
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~--~~~llpki~P~~i~sve~~eGdgg~---gGSIk~~~f~~-----~~~-~--~~~Kekv 72 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKS--SPHLLPKILPHVIKSVEVVEGDGGP---GGSIKKWTFGP-----GGP-F--KYVKEKV 72 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTT--HHHHHHHHSTTTEEEEEEEESSSST---TT-EEEEEEET-----TSS-E--EEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhc--CccchhhhChhhceeEEEEccCCCC---CCeEEEEEecC-----CCC-c--ceeEEEE
Confidence 34577889999999998665 336666665 334455666788854 36899999964 233 2 3447888
Q ss_pred EEecCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482 362 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK 417 (442)
Q Consensus 362 ~~~~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~K 417 (442)
...+++...+..+..--| +.++|..-.....+.+.+. ++|.++... +|.+
T Consensus 73 e~~D~~~~~~~y~viEGd-~l~~~~~~~~~~~~~~~~~---g~~v~k~t~--~Ye~ 122 (151)
T PF00407_consen 73 EAIDEENKTITYTVIEGD-VLGDYKSFKSTIQKIPKGD---GGCVVKWTI--EYEK 122 (151)
T ss_dssp EEEETTTTEEEEEEEEET-TGTTTEEEEEEEEEEEETT---SCEEEEEEE--EEEE
T ss_pred EeecCCCcEEEEEEEecc-ccccEEEEEEEEEecCCCC---CceEEEEEE--EEEe
Confidence 877666444555544344 3455555555555544332 457666554 4544
No 15
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.72 E-value=3.8 Score=34.82 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=48.3
Q ss_pred ceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEeC-CeEEEEeecCCH
Q 013482 94 ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA-GKKYFFASFLSR 160 (442)
Q Consensus 94 i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~-~~~~~F~sF~~r 160 (442)
+--.|++-|-..-+=||... ..+.-+.|||.+|..|--..+..-+---..|.|+ +.+|.|+|=-+.
T Consensus 21 ~~~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~gk~~FaSkdsg 87 (122)
T COG4687 21 FAEYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQGKVRFASKDSG 87 (122)
T ss_pred hhhcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEcCCceEEEEeCCch
Confidence 44679999999999998764 3466789999999987655443312235677787 789999986543
No 16
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=75.81 E-value=73 Score=30.12 Aligned_cols=128 Identities=9% Similarity=0.094 Sum_probs=67.1
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeee---eecCCCceeeeeEEEE
Q 013482 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI---KVYFGAKFGSCKETQK 360 (442)
Q Consensus 284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl---~~~iGpk~t~~~e~Q~ 360 (442)
-++.+++++++++|+.++.... ..++ +.++....+-..=+ ..+ .+.|..-- ...++|.. ....+.
T Consensus 49 k~egvi~~~~e~v~~~l~~~e~---r~~W-----d~~~~~~~iie~Id-~~T-~I~~~~~~~~~~~~vspRD--fV~vr~ 116 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQPEH---RIKW-----DKSLQVYKMLQRID-SDT-FICHTITQSFAMGSISPRD--FVDLVH 116 (204)
T ss_pred EEEEEecCCHHHHHHHHhccch---hhhh-----cccccceeeEEEeC-CCc-EEEEEecccccCCcccCce--EEEEEE
Confidence 3678999999999998765431 1111 11111111111101 111 24443221 12256653 333344
Q ss_pred EEEecCCeEEEEE-EEEeCCC-CCCCceEEEEE---EEEEecCCCCCCceEEEEEEEEEEeeecccchhh
Q 013482 361 FRVYRNSHLVIET-SQEVHDV-PYGDYFRVEGL---WDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLP 425 (442)
Q Consensus 361 i~~~~~~~~vVe~-~~~~~dV-PygD~F~ve~r---~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I 425 (442)
...++++.|++-. ++.-+.. |=.++.+-+.. |.|.+.++++ .+|+|..++.+... ..+=+..|
T Consensus 117 ~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p-~~t~l~~~~~~Dlk-G~lP~~vv 184 (204)
T cd08904 117 IKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENP-AYSKLVMFVQPELR-GNLSRSVI 184 (204)
T ss_pred EEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCC-CceEEEEEEEeCCC-CCCCHHHH
Confidence 3345666666544 3333443 44666666654 9999987643 58999999987764 34444444
No 17
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=74.14 E-value=54 Score=30.88 Aligned_cols=113 Identities=9% Similarity=0.103 Sum_probs=61.3
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecC-------C-CceeeEEEEEeeeeec---CCCcee
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-------E-FGYSRDLSFQHPIKVY---FGAKFG 353 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~-------~-~~~~R~vsY~~pl~~~---iGpk~t 353 (442)
.+.++++++++++..+|.|-. .. ..|...- . +..+ .+.|..-...| +.+.-
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e--~~--------------~~W~~~~~~~~vl~~id~~~-~i~y~~~~p~p~~~vs~RD- 114 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRME--QM--------------GEWNPNVKEVKILQRIGKDT-LITHEVAAETAGNVVGPRD- 114 (209)
T ss_pred EEEEecCCHHHHHHHHHhchh--hh--------------ceecccchHHHHHhhcCCCc-eEEEEEeccCCCCccCccc-
Confidence 578999999999988887732 11 1222210 0 1112 23333212222 33332
Q ss_pred eeeEEEEEEEecCCeEEEEEEEEeCCCC-CCCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482 354 SCKETQKFRVYRNSHLVIETSQEVHDVP-YGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSK 417 (442)
Q Consensus 354 ~~~e~Q~i~~~~~~~~vVe~~~~~~dVP-ygD~F~ve---~r~~i~~~~~~~~~~c~l~V~~~V~F~K 417 (442)
....+.....++..+++..+...+.+| -.++-+++ +.|.|++.+++ .++|+|...+.+...+
T Consensus 115 -~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~-~~~t~v~~~~~~DpkG 180 (209)
T cd08905 115 -FVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGD-PSKTKLTWLLSIDLKG 180 (209)
T ss_pred -eEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCC-CCceEEEEEEeecCCC
Confidence 222344333444445555555555554 34555444 67999998642 2689999998888754
No 18
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=73.74 E-value=57 Score=30.48 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=59.6
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEE-e-e-eeecCCCceeeeeEEEEE
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQ-H-P-IKVYFGAKFGSCKETQKF 361 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~-~-p-l~~~iGpk~t~~~e~Q~i 361 (442)
.+.+++++++++|..+|.|.. ...++.......+ .-..- +..++ +.|. . | ...++.+. .....++.
T Consensus 52 ~~~~i~~~~~~v~~~l~~d~~--~~~~Wd~~~~~~~-----~i~~~-d~~~~-i~y~~~~~~~~~~vs~R--DfV~~r~~ 120 (208)
T cd08868 52 LTGVLDCPAEFLYNELVLNVE--SLPSWNPTVLECK-----IIQVI-DDNTD-ISYQVAAEAGGGLVSPR--DFVSLRHW 120 (208)
T ss_pred EEEEEcCCHHHHHHHHHcCcc--ccceecCcccceE-----EEEEe-cCCcE-EEEEEecCcCCCccccc--ceEEEEEE
Confidence 467899999999998887642 1121111111111 10000 11223 3342 1 1 11223333 22223443
Q ss_pred EEecCCeEEE-EEEEEeCCCCCCC-ceEEE---EEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482 362 RVYRNSHLVI-ETSQEVHDVPYGD-YFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSK 417 (442)
Q Consensus 362 ~~~~~~~~vV-e~~~~~~dVPygD-~F~ve---~r~~i~~~~~~~~~~c~l~V~~~V~F~K 417 (442)
...+ +.|+| ..+..-+..|-.. +-+++ ..|.|+..+.++ ++|+|...+.+...+
T Consensus 121 ~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~-~~t~v~~~~~~Dp~G 179 (208)
T cd08868 121 GIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP-NKCNFTWLLNTDLKG 179 (208)
T ss_pred EecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC-CceEEEEEEEECCCC
Confidence 3333 44544 4443335565444 34444 779999986432 689999888887653
No 19
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=73.65 E-value=20 Score=28.00 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=44.2
Q ss_pred EecceEEEEeccCCceeEEEEecccccccccccccccc----CcEEEEEeCCeEEEEeecCCHHHHHHHHHH
Q 013482 102 LFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIF----PNAIEIFAAGKKYFFASFLSRDEAFKLITD 169 (442)
Q Consensus 102 is~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~----pnaI~I~t~~~~~~F~sF~~rd~~~~li~~ 169 (442)
|.+++|.-..-++. ..||+.+|.+|++.++.... ...|+|..++.+.+..|=.++++-...|++
T Consensus 5 i~~~~L~I~~G~~~----~~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~~~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 5 IEDDYLIIKCGFFK----KKIPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKYKSILISPKDKEEFIAELQK 72 (74)
T ss_pred EeCCEEEEEECCcc----cEEEhHHccEEEecCCccccccccccEEEEEECCCCEEEEECCCHHHHHHHHHh
Confidence 35666666655332 23999999999999753322 358999988766688887788866555553
No 20
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=70.67 E-value=16 Score=27.19 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=36.2
Q ss_pred CeeeEEEEEEEe--ecceeeeEEEEecceEEEEeccCCceeEEEEecccccccc
Q 013482 80 EVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVR 131 (442)
Q Consensus 80 E~li~~f~Cal~--~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~ 131 (442)
|.+++.+.-... ...---|+|+||.-.+..||..- ....+.|||-.|.+|+
T Consensus 1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVR 53 (55)
T ss_pred CEEEeeecCeEecCCCCCCeeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEE
Confidence 344444444433 22223499999999999999864 4678999999998875
No 21
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=65.71 E-value=99 Score=27.51 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=61.3
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~ 364 (442)
...++++++++++.+++.... ..++... ..+..+-.. ...+.......|..| .|+.|..--+. ......
T Consensus 43 ~~~~i~~~~~~v~~~l~d~~~---~~~w~~~--~~~~~vl~~--~~~~~~i~~~~~~~p--~p~~~Rdfv~~--~~~~~~ 111 (193)
T cd00177 43 AEGVIPASPEQVFELLMDIDL---RKKWDKN--FEEFEVIEE--IDEHTDIIYYKTKPP--WPVSPRDFVYL--RRRRKL 111 (193)
T ss_pred EEEEECCCHHHHHHHHhCCch---hhchhhc--ceEEEEEEE--eCCCeEEEEEEeeCC--CccCCccEEEE--EEEEEc
Confidence 567899999999998886432 2222211 111111010 011112222222222 22445432222 222122
Q ss_pred c-CCeEEEEEEEEeCCCCCC-CceEEEEE---EEEEecCCCCCCceEEEEEEEEEEeee
Q 013482 365 R-NSHLVIETSQEVHDVPYG-DYFRVEGL---WDVMRDDGGSKEGCILRVYVNVAFSKK 418 (442)
Q Consensus 365 ~-~~~~vVe~~~~~~dVPyg-D~F~ve~r---~~i~~~~~~~~~~c~l~V~~~V~F~Ks 418 (442)
. +..+++..+...+.+|-. ++-+.+.. |+|+..++ ++|++.....+....+
T Consensus 112 ~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~---~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 112 DDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP---GKTKVTYVLQVDPKGS 167 (193)
T ss_pred CCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC---CCEEEEEEEeeCCCCC
Confidence 3 444555555544446655 66666654 99998843 6899999999988753
No 22
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=61.15 E-value=27 Score=33.55 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=31.2
Q ss_pred ceeeeEEEEecceEEEEeccCCceeEEEEecccccccccc
Q 013482 94 ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRA 133 (442)
Q Consensus 94 i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~ 133 (442)
-+..||+.+|++.|.|-.+ ..|..||+++|.+|...
T Consensus 24 ~W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 24 KWVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred CcEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 4678999999999999874 45789999999999874
No 23
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=60.41 E-value=42 Score=27.85 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=40.2
Q ss_pred eeeEEEEecceEEEEeccCC-c---eeEEEEeccccccccccccccccCcEEEEEeCCeEEEEeec
Q 013482 96 LQGHMYLFVHFICFYSNIFG-F---ETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (442)
Q Consensus 96 ~~GrlYis~~~icF~S~~~g-~---~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~~~~F~sF 157 (442)
-.=++|+..+.+..++...+ . ...-.||+.++. |+......-.||+.+|.+..+.|.+..=
T Consensus 17 ~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~ks~~l~A~ 81 (99)
T cd01220 17 QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGGQCAITVAAS 81 (99)
T ss_pred ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcCCeEEEEECC
Confidence 33467888887776654333 1 345679999885 5554432246899999988877777443
No 24
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=60.31 E-value=1.3e+02 Score=27.86 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=59.1
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCC-ceeeEEEEEeeeeecCCCceeeeeEEE-EEE
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEF-GYSRDLSFQHPIKVYFGAKFGSCKETQ-KFR 362 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~-~~~R~vsY~~pl~~~iGpk~t~~~e~Q-~i~ 362 (442)
.+.++++++++++.+++... ...|-.+..++.-+.. ....-+.|..+...|+.+. .....+ ...
T Consensus 48 ~~~~v~a~~~~v~~~l~d~r------------~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~R--DfV~~r~~~~ 113 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRER------------HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTR--DYVVLRTWRT 113 (197)
T ss_pred EEEEeCCCHHHHHHHHHHHH------------hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCc--eEEEEEEEEe
Confidence 46789999999998776321 1112222222211111 1122233443332233222 222221 111
Q ss_pred EecCCeEEEEEEEEe--CCCCCCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482 363 VYRNSHLVIETSQEV--HDVPYGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418 (442)
Q Consensus 363 ~~~~~~~vVe~~~~~--~dVPygD~F~v---e~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks 418 (442)
..++..|+|...... ..+|= .+.++ .+.|.|++.++ ++|+|...+.+...++
T Consensus 114 ~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~---~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 114 DLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGS---GKSRVTHICRVDLRGR 170 (197)
T ss_pred cCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCC---CCeEEEEEEEECCCCC
Confidence 223444655554332 25655 65544 47799999864 6899999999887543
No 25
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=60.25 E-value=26 Score=29.38 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=40.2
Q ss_pred EEEecceEEEEeccC-CceeEEEEeccccccccccccc---cccCcEEEEEeCCeEEEEeec
Q 013482 100 MYLFVHFICFYSNIF-GFETKKIIPFYEVTAVRRAKTA---GIFPNAIEIFAAGKKYFFASF 157 (442)
Q Consensus 100 lYis~~~icF~S~~~-g~~~k~~I~~~dI~~I~k~~~~---~~~pnaI~I~t~~~~~~F~sF 157 (442)
..++.++|.|+.... .....-+|++.++..|+..... .-.||+.+|.|.+..|+|..=
T Consensus 24 F~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~ 85 (101)
T cd01264 24 FTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAK 85 (101)
T ss_pred EEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeC
Confidence 456778886665432 1223358999999999875421 235899999999999988654
No 26
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=60.15 E-value=72 Score=32.59 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=69.5
Q ss_pred CCCCCCeeeEEEEEEEe--ecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccc-cc--cCcEEEEEeC-
Q 013482 75 RLPSEEVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTA-GI--FPNAIEIFAA- 148 (442)
Q Consensus 75 ~lp~~E~li~~f~Cal~--~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~-~~--~pnaI~I~t~- 148 (442)
.|-++|.+++.+.-.=- ..-=-.|+|+||+=.|..+|...- ...+.|=|.-|..|+-.... ++ ...|+-|.++
T Consensus 18 ~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~ 96 (339)
T PF07289_consen 18 KLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKF 96 (339)
T ss_pred ccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeec
Confidence 35578999887766543 122346999999999999997432 46778888888887654321 22 2358888875
Q ss_pred ---CeEEEEeecCC---HHHHHHHHHHHHHhcC
Q 013482 149 ---GKKYFFASFLS---RDEAFKLITDGWLQHG 175 (442)
Q Consensus 149 ---~~~~~F~sF~~---rd~~~~li~~~w~~~~ 175 (442)
.-+|+|+.... +...|..|...|+.+.
T Consensus 97 ~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 97 NNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred CCceEEEEeccCCCCCccchHHHHHHHHHHHHH
Confidence 34788886653 2257999999998875
No 27
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=59.77 E-value=51 Score=33.62 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=74.7
Q ss_pred CCCCCCeeeEEEEEEEe--ecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEeC--Ce
Q 013482 75 RLPSEEVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA--GK 150 (442)
Q Consensus 75 ~lp~~E~li~~f~Cal~--~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~--~~ 150 (442)
.|=+.|.++..+.-.|. .+.=--|.++||+-.+-.|+.+- -.-++.|||-+|.+|....+ + |.-|+.|.|. .+
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~S-K-fG~aLVieT~~~sG 226 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDS-K-FGPALVIETSESSG 226 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCC-ccccccchHhhheeeeeecc-c-cceEEEEEEeccCC
Confidence 34458999998888876 33333399999999999999753 35689999999999988775 3 4559999875 46
Q ss_pred EEEEeecCC----HHHHHHHHHHHHHhcCC
Q 013482 151 KYFFASFLS----RDEAFKLITDGWLQHGS 176 (442)
Q Consensus 151 ~~~F~sF~~----rd~~~~li~~~w~~~~~ 176 (442)
.|+..-=++ -++.|+-|..+|+....
T Consensus 227 gYVLGFRvDP~ErL~~l~KEi~sLh~vy~~ 256 (339)
T PF07289_consen 227 GYVLGFRVDPEERLQELFKEIQSLHKVYSA 256 (339)
T ss_pred cEEEEEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence 888855555 25788888888888653
No 28
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=58.93 E-value=1.8e+02 Score=28.22 Aligned_cols=136 Identities=13% Similarity=-0.031 Sum_probs=74.8
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCC-ceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGD-KEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~-~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~ 363 (442)
.+.+++++++++|.+|..... -.++...+.. ..+..-. + ...-+..+.|.-.|+.|.-- |. ......
T Consensus 81 ~e~~vd~s~~~v~dlL~D~~~---R~~WD~~~~e~evI~~id----~---d~~iyy~~~p~PwPvk~RDf-V~-~~s~~~ 148 (235)
T cd08873 81 VELKVQTCASDAFDLLSDPFK---RPEWDPHGRSCEEVKRVG----E---DDGIYHTTMPSLTSEKPNDF-VL-LVSRRK 148 (235)
T ss_pred EEEEecCCHHHHHHHHhCcch---hhhhhhcccEEEEEEEeC----C---CcEEEEEEcCCCCCCCCceE-EE-EEEEEe
Confidence 467799999999997754332 1222222111 1111111 1 12222233333224555532 22 222222
Q ss_pred -ecC-CeEEEEEEEEe-CCCCC-CCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeeecccchhhHHHhhhccch
Q 013482 364 -YRN-SHLVIETSQEV-HDVPY-GDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHLLISPT 435 (442)
Q Consensus 364 -~~~-~~~vVe~~~~~-~dVPy-gD~F~v---e~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I~~~~~~~~~~ 435 (442)
.++ +.|+|...... +.+|= -++.++ ...|.|.+.++ ++|+|.....+.--=-.-+-+-|.-+++.+++|
T Consensus 149 ~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~---~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~ 224 (235)
T cd08873 149 PATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCG---TCTEVSYYNETNPKLLSYVTCNLAGLSALYCRT 224 (235)
T ss_pred ccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCC---CcEEEEEEEEcCCCccceeeecchhhhHHHHHH
Confidence 233 34777666555 44443 355544 56799999864 689999888886655556677788888888875
No 29
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=57.95 E-value=24 Score=28.11 Aligned_cols=63 Identities=11% Similarity=0.274 Sum_probs=40.8
Q ss_pred EEEEeecceeeeEEEEecce--EEEEeccCCceeEEEEecccccccccccc--ccccCcEEEEEeC------CeEEEEe
Q 013482 87 NCAFQESILLQGHMYLFVHF--ICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAA------GKKYFFA 155 (442)
Q Consensus 87 ~Cal~~~i~~~GrlYis~~~--icF~S~~~g~~~k~~I~~~dI~~I~k~~~--~~~~pnaI~I~t~------~~~~~F~ 155 (442)
.|.+.+ ..|.|||++.+ +-+...--+-...+.|+|.+|+..+-.+. +.+ -++|... ...|.|+
T Consensus 6 ~~~yKK---~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv---~Lki~~~~~~~~~~~~f~F~ 78 (79)
T PF08567_consen 6 AASYKK---KDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKV---MLKIVLKDDSSEESKTFVFT 78 (79)
T ss_dssp EEEETT---EEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTE---EEEEEETTSC---CCCEEE-
T ss_pred eEEEEc---CCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcce---EEEEEEecCCcccceEEEEe
Confidence 455554 24999999999 88887644434479999999999876543 222 3566532 2457774
No 30
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=54.15 E-value=43 Score=27.81 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=37.2
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccccc-cccCcEEEEEeCCeEEEE
Q 013482 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTA-GIFPNAIEIFAAGKKYFF 154 (442)
Q Consensus 101 Yis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~-~~~pnaI~I~t~~~~~~F 154 (442)
-++.+.|++|..- +...+=.||+.+|..|+..... .-.++.++|.|.+..|++
T Consensus 27 ~Lt~~~L~Y~k~~-~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi 80 (98)
T cd01244 27 QLTTTHLSWAKDV-QCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQL 80 (98)
T ss_pred EECCCEEEEECCC-CCceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEE
Confidence 3466677777543 3567789999999999876542 123589999998755444
No 31
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=51.75 E-value=1.7e+02 Score=25.72 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=56.0
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (442)
Q Consensus 284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~ 363 (442)
..+.+++++++++|. +|++....+.+.++......++.-+. ...|..|.++|. -|.+.. .-.+++..
T Consensus 4 ~~e~~i~a~ad~vW~-~~~~~~~~~~~~~~p~v~~~~~~eG~----~~~GsvR~~~~~------~~~~~~--~~kE~l~~ 70 (148)
T cd07816 4 EHEVELKVPAEKLWK-AFVLDSHLLPPKLPPVIKSVELLEGD----GGPGSIKLITFG------PGGKVK--YVKERIDA 70 (148)
T ss_pred EEEEEecCCHHHHHH-HHhcChhhccccccccccEEEEEecC----CCCceEEEEEEc------CCCcce--EEEEEEEE
Confidence 346789999999999 45543211223333222222222232 234788988873 122111 23466666
Q ss_pred ecCCeEEEEEEEEeCCCC--CCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 013482 364 YRNSHLVIETSQEVHDVP--YGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (442)
Q Consensus 364 ~~~~~~vVe~~~~~~dVP--ygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~ 416 (442)
.++....+.-+..--++| .=.+|.. .+.+...+. ++|.+... +.|.
T Consensus 71 ~D~~~~~~~y~vveg~~~~~~~~~y~~--t~~v~~~~~---~~t~v~Wt--~~ye 118 (148)
T cd07816 71 VDEENKTYKYTVIEGDVLKDGYKSYKV--EIKFVPKGD---GGCVVKWT--IEYE 118 (148)
T ss_pred EcccccEEEEEEEecccccCceEEEEE--EEEEEECCC---CCEEEEEE--EEEE
Confidence 665444444444434443 1233333 344455432 47866644 4454
No 32
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=50.59 E-value=38 Score=25.59 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccchhhHhhHHhhhhCCCCCCCeeeEEEEEEEe-ecceeeeEEEEe
Q 013482 36 CAADPPDRNVQFSTSPIPNGDVEVQSSVTLRSEEYRQLFRLPSEEVLVQDFNCAFQ-ESILLQGHMYLF 103 (442)
Q Consensus 36 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~lF~lp~~E~li~~f~Cal~-~~i~~~GrlYis 103 (442)
....|+....+....|..-+.++. +.||+= ++|.+|. ..-++. -++..+|+|.++
T Consensus 7 ~~~~~s~da~~~~~~p~~~r~v~S-----------~~Lfgg-~~~i~I~-H~Ga~Y~lr~Tr~GKLiLt 62 (63)
T COG4256 7 RKLTPSTDANHKTALPQPIRRVSS-----------QTLFGG-DGKIIID-HDGAEYLLRKTRAGKLILT 62 (63)
T ss_pred cccCCCcCCCccccCCCccceech-----------hhcccC-CCeEEEe-cCCceEEEeeeecceeeec
Confidence 333444444445555555555443 457763 4555554 455554 478889999876
No 33
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=49.72 E-value=1.5e+02 Score=24.54 Aligned_cols=107 Identities=8% Similarity=0.114 Sum_probs=53.8
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (442)
Q Consensus 284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~ 363 (442)
..+.++++|++++|+++-.-.. +..++.......+.-..+ ..+..|.+.+. .| -.-.+++..
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~---~~~w~~~~~~~~~~~~~~----~~g~~~~~~~~------~g-----~~~~~~i~~ 65 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGG---LHKWHPAVASCELEGGGP----GVGAVRTVTLK------DG-----GTVRERLLA 65 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCc---hhhhccCcceEEeecCCC----CCCeEEEEEeC------CC-----CEEEEEehh
Confidence 3467899999999997665432 233332111111111111 12445544432 22 112344443
Q ss_pred ec-C-CeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 013482 364 YR-N-SHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (442)
Q Consensus 364 ~~-~-~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~ 416 (442)
.+ . ..+.+.... .+.|+.+ ....|.++..++ ++|+|.......-.
T Consensus 66 ~~~~~~~i~~~~~~--~~~~~~~---~~~~~~~~~~~~---~~t~v~~~~~~~~~ 112 (140)
T cd07821 66 LDDAERRYSYRIVE--GPLPVKN---YVATIRVTPEGD---GGTRVTWTAEFDPP 112 (140)
T ss_pred cCccCCEEEEEecC--CCCCccc---ceEEEEEEECCC---CccEEEEEEEEecC
Confidence 33 2 344333321 1345443 578899998764 47888777665443
No 34
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=48.83 E-value=2.1e+02 Score=25.98 Aligned_cols=130 Identities=10% Similarity=0.066 Sum_probs=68.1
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeec--CCCceeeeeEEEEE
Q 013482 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQKF 361 (442)
Q Consensus 284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~--iGpk~t~~~e~Q~i 361 (442)
-.+.+++++++++|+++..- +...+|........+ +... .. ...+.|.. ++.| +.+.. ..-..+.
T Consensus 44 k~~~~i~~s~e~v~~vi~d~---e~~~~w~~~~~~~~v-ie~~---~~---~~~i~~~~-~~~p~pvs~Rd--fv~~~~~ 110 (195)
T cd08876 44 KAVAEVDASIEAFLALLRDT---ESYPQWMPNCKESRV-LKRT---DD---NERSVYTV-IDLPWPVKDRD--MVLRSTT 110 (195)
T ss_pred EEEEEEeCCHHHHHHHHhhh---HhHHHHHhhcceEEE-eecC---CC---CcEEEEEE-EecccccCCce--EEEEEEE
Confidence 35678999999999976532 233444432222211 1111 11 12333332 1222 22221 2212222
Q ss_pred EEe-cCCeEEEEEEEEeCCCCCCC----ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeecccchhhHHHhh
Q 013482 362 RVY-RNSHLVIETSQEVHDVPYGD----YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGLPLLIHL 430 (442)
Q Consensus 362 ~~~-~~~~~vVe~~~~~~dVPygD----~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst~~K~~I~~~~~ 430 (442)
... ++..++|.......++|-.. -+.....|.|+..++ ++|+|.....+.+. ..+-+..|..+.+
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~---~~t~vt~~~~~dp~-g~iP~~lv~~~~~ 180 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN---GKTRVTYQAYADPG-GSIPGWLANAFAK 180 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCC---CeEEEEEEEEeCCC-CCCCHHHHHHHHH
Confidence 222 24556666654433355332 256667899999864 58999999999884 5666666655543
No 35
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=47.91 E-value=81 Score=23.94 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=41.6
Q ss_pred EEEEecceEEEEeccCC---ceeEEEEecccccccccccccc--ccCcEEEEEeCCe-EEEEeecCCHHHH
Q 013482 99 HMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAG--IFPNAIEIFAAGK-KYFFASFLSRDEA 163 (442)
Q Consensus 99 rlYis~~~icF~S~~~g---~~~k~~I~~~dI~~I~k~~~~~--~~pnaI~I~t~~~-~~~F~sF~~rd~~ 163 (442)
.+.+..+.|++|...-+ ......|++.++ .|....... -.++++.|.+.+. .|.|..- +.++.
T Consensus 22 ~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~-s~~~~ 90 (102)
T smart00233 22 YFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE-SEEER 90 (102)
T ss_pred EEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC-CHHHH
Confidence 35567788888876533 355678999998 665554321 3568999988776 8888654 44443
No 36
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=45.51 E-value=77 Score=34.24 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=61.7
Q ss_pred EEEe-ecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEeC-CeEEEEeecCCHHHHHH
Q 013482 88 CAFQ-ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA-GKKYFFASFLSRDEAFK 165 (442)
Q Consensus 88 Cal~-~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~-~~~~~F~sF~~rd~~~~ 165 (442)
|.|. +.....|+|=|+++-|.|-..-=| .-+.|+-.||..++=.+. ....+|.|.|+ +.-|-|..| ||.-++
T Consensus 10 iyl~~~G~~~~G~lkit~~gi~~K~~~gg--k~~~v~~sei~~~~w~k~--~r~~~LrV~tk~g~~~~~~GF--~d~d~~ 83 (615)
T KOG0526|consen 10 IYLEVSGHLKPGTLKITESGIGFKNSKGG--KVVTVPASEIDKVKWQKG--VRGYGLRVFTKDGGVYRFDGF--RDDDLE 83 (615)
T ss_pred eEEecccccccceEEEccCceeEeeCCCC--ceEEeehHHhhhhhhhhh--ccccceEEEccCCceEEecCc--CHHHHH
Confidence 5554 345778999999999999854333 557899999999887664 34569999987 578999999 676677
Q ss_pred HHHHHHHhc
Q 013482 166 LITDGWLQH 174 (442)
Q Consensus 166 li~~~w~~~ 174 (442)
.|.++.+..
T Consensus 84 ~L~~ff~~~ 92 (615)
T KOG0526|consen 84 KLKSFFSSN 92 (615)
T ss_pred HHHHHHHHh
Confidence 777776654
No 37
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=44.94 E-value=95 Score=28.94 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=67.7
Q ss_pred hhHHhhhhCC-CCCCCeeeEEEEEEEe---ecceeeeE-EEEecceEEEEe-----ccCCceeEEEEecccccccccccc
Q 013482 66 RSEEYRQLFR-LPSEEVLVQDFNCAFQ---ESILLQGH-MYLFVHFICFYS-----NIFGFETKKIIPFYEVTAVRRAKT 135 (442)
Q Consensus 66 ~~~~f~~lF~-lp~~E~li~~f~Cal~---~~i~~~Gr-lYis~~~icF~S-----~~~g~~~k~~I~~~dI~~I~k~~~ 135 (442)
.+..+.++++ ...+|.++ |+|... |..-.+-| |.||+++|+... .......+-.||+.+|.+|.-...
T Consensus 33 ~~~~~~~~~~~~~~~e~vl--Fs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~ 110 (199)
T PF06017_consen 33 NNPKLQKILEKNEGDEKVL--FSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPL 110 (199)
T ss_pred ccccHHHHHHhccCCcceE--EEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccC
Confidence 3566666664 32245433 555544 33333444 578999999986 445567788999999999976542
Q ss_pred ccccCcEEEEEeC-CeEEEEeecCCHHHHHHHHHHHHHhcC
Q 013482 136 AGIFPNAIEIFAA-GKKYFFASFLSRDEAFKLITDGWLQHG 175 (442)
Q Consensus 136 ~~~~pnaI~I~t~-~~~~~F~sF~~rd~~~~li~~~w~~~~ 175 (442)
-.+-+.|... ...++|.+ ..+-|....|..+++...
T Consensus 111 ---~D~~~vihv~~~~D~il~~-~~k~Elv~~L~~~~~~~~ 147 (199)
T PF06017_consen 111 ---SDNFFVIHVPGEGDLILES-DFKTELVTILCKAYKKAT 147 (199)
T ss_pred ---CCCEEEEEECCCCCEEEEe-CcHHHHHHHHHHHHHHHh
Confidence 3455566544 56788876 456778888888887644
No 38
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.49 E-value=2.1e+02 Score=24.46 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=59.1
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecCCCceeeeeEEEEEEEe
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~~ 364 (442)
+...|++++++||+.|-. ..+.++.+..|.. + ..... .-++|.+.++. +. .+++..+ .+.
T Consensus 3 I~~~l~v~a~~ff~~l~~----s~~~DI~~~tgk~-~--------~~~~L-~G~~Y~K~~~~--~~-~~~v~It---~~~ 62 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID----SLLYDIKQATGKK-L--------PVKQL-KGFSYQKKFKN--KR-EAKVKIT---EYE 62 (120)
T ss_pred EEEEecCCHHHHHHHHHH----HHHHHHHHHcCCC-C--------Chhhc-CCcEEEEEcCC--CC-EEEEEEE---EEc
Confidence 357899999999997664 2455555544433 1 11112 45688877764 11 2333322 234
Q ss_pred cCCeEEEEEEEEeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEE
Q 013482 365 RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNV 413 (442)
Q Consensus 365 ~~~~~vVe~~~~~~dVPygD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V 413 (442)
++..|.+...+.. +. ...+|.|...+. +.|+|...=.+
T Consensus 63 ~~~~Y~~~~~s~~-----~~---~~i~Y~i~~~~~---~~~~v~y~E~~ 100 (120)
T PF11687_consen 63 PNKRYAATFSSSR-----GT---FTISYEIEPLDD---GSIEVTYEEEY 100 (120)
T ss_pred CCCEEEEEEEecC-----CC---EEEEEEEEECCC---CcEEEEEEEEE
Confidence 6788888877542 22 778999999865 46776655444
No 39
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=43.00 E-value=1.5e+02 Score=22.81 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=43.8
Q ss_pred EEEEecceEEEEeccC---CceeEEEEeccccccccccccc-----cccCcEEEEEeCCe-EEEEeecCCHHHH
Q 013482 99 HMYLFVHFICFYSNIF---GFETKKIIPFYEVTAVRRAKTA-----GIFPNAIEIFAAGK-KYFFASFLSRDEA 163 (442)
Q Consensus 99 rlYis~~~icF~S~~~---g~~~k~~I~~~dI~~I~k~~~~-----~~~pnaI~I~t~~~-~~~F~sF~~rd~~ 163 (442)
-+.|..+.|.+|.+-- .......|++.++ .|...... .-.++++.|.+.+. .|+|. .-+.++.
T Consensus 21 ~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~~ 92 (104)
T PF00169_consen 21 YFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFS-AESEEER 92 (104)
T ss_dssp EEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEE-ESSHHHH
T ss_pred EEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEE-cCCHHHH
Confidence 4456778888887655 4567789999999 65554433 34678999999875 77775 4455543
No 40
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=41.87 E-value=1e+02 Score=23.44 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=46.4
Q ss_pred EEEecceEEEEeccCCceeEEEEecccccccccccccc---ccCcEEEEEeCCeE--EEEeecCCHHHHHHHH
Q 013482 100 MYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG---IFPNAIEIFAAGKK--YFFASFLSRDEAFKLI 167 (442)
Q Consensus 100 lYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~---~~pnaI~I~t~~~~--~~F~sF~~rd~~~~li 167 (442)
..|+++.|...+.+|+ .....||+..|.+|+-..+.. +--..|.|.+.+.. -.-..+.+.++|-.+.
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~ 77 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIY 77 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHH
Confidence 7789999999998876 567899999999998876421 22256777765422 1444566667666554
No 41
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=38.72 E-value=2.2e+02 Score=23.26 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=39.7
Q ss_pred EEEecceEEEEeccCCceeEEEEeccccccccccc-ccc--ccCcEEEEEeCCeEEEEeecCCHHHHHHHHH
Q 013482 100 MYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAK-TAG--IFPNAIEIFAAGKKYFFASFLSRDEAFKLIT 168 (442)
Q Consensus 100 lYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~-~~~--~~pnaI~I~t~~~~~~F~sF~~rd~~~~li~ 168 (442)
+.+..++|++|.+--.....-.|++.++. |+... ... -.||.+.|.|.+..|+|.. .+.++...=|.
T Consensus 23 fvL~~~~L~yyk~~~~~~~~~~I~L~~~~-v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A-~s~~e~~~Wi~ 92 (100)
T cd01233 23 VVVRRPYLHIYRSDKDPVERGVINLSTAR-VEHSEDQAAMVKGPNTFAVCTKHRGYLFQA-LSDKEMIDWLY 92 (100)
T ss_pred EEEECCEEEEEccCCCccEeeEEEecccE-EEEccchhhhcCCCcEEEEECCCCEEEEEc-CCHHHHHHHHH
Confidence 34566777777654334556778888663 32221 111 1478999999988888854 44554443333
No 42
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=37.03 E-value=2.1e+02 Score=24.05 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=37.9
Q ss_pred cceeeeEEEEecceEEEEeccCC---ceeEEEEeccccccccccccccccCcEEEEEeCCeEEEEee
Q 013482 93 SILLQGHMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFAS 156 (442)
Q Consensus 93 ~i~~~GrlYis~~~icF~S~~~g---~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~~~~F~s 156 (442)
+-+.+=..|++++.|..-+...+ +...-.||++++.-. ......-++|+..|.+..+.|.+..
T Consensus 16 k~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~-~~~d~~~~~n~f~I~~~~kSf~v~A 81 (104)
T cd01218 16 KKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVE-SIEDDGIERNGWIIKTPTKSFAVYA 81 (104)
T ss_pred CCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEE-ecCCcccccceEEEecCCeEEEEEc
Confidence 33333345777776666543333 234567898887422 2222234689999999888777644
No 43
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=32.81 E-value=4.3e+02 Score=24.91 Aligned_cols=121 Identities=7% Similarity=-0.025 Sum_probs=61.8
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeeecC--CCceeeeeEEEEE
Q 013482 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF--GAKFGSCKETQKF 361 (442)
Q Consensus 284 v~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~~i--Gpk~t~~~e~Q~i 361 (442)
..+.++++++++++++|-.-... .++.......++- . +.. ...+-+.++.+..-|+ -+.- ....+..
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r---~~Wd~~~~~~~vl--~-~~~---~d~~i~y~~~~~Pwp~~~~~RD--fV~l~~~ 116 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTR---FLYDTMIKTARIH--K-TFT---EDICLVYLVHETPLCLLKQPRD--FCCLQVE 116 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchh---hhhHHhhhheeee--e-ecC---CCeEEEEEEecCCCCCCCCCCe--EEEEEEE
Confidence 35778999999999977332211 1222222222221 1 111 2234444444332222 3332 2222333
Q ss_pred EEecCCeEEEEEEEEeC-CCC-CC-Cc---eEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 013482 362 RVYRNSHLVIETSQEVH-DVP-YG-DY---FRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (442)
Q Consensus 362 ~~~~~~~~vVe~~~~~~-dVP-yg-D~---F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~ 416 (442)
...++.++|......+ .+| -. ++ +.+.+.|.|++...+++++|+|.....+.=.
T Consensus 117 -~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 117 -AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred -EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 3455555555544433 666 33 45 4556789999983333468999888877543
No 44
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=32.54 E-value=4.3e+02 Score=24.82 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=56.7
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCC--------CceeeEEEEEeeee---ecCCCcee
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE--------FGYSRDLSFQHPIK---VYFGAKFG 353 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~--------~~~~R~vsY~~pl~---~~iGpk~t 353 (442)
.+.+++++++.+|..+|.|-. . ...|...-. +... .+.|..-.. .|+.+.
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~-~---------------~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~R-- 113 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPE-K---------------MVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPR-- 113 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChh-h---------------ccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCC--
Confidence 568899999999987777753 1 123322110 1112 234522111 122332
Q ss_pred eeeEEEEEEEecCCeEEEEEEEEeCCCC-CCCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482 354 SCKETQKFRVYRNSHLVIETSQEVHDVP-YGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSK 417 (442)
Q Consensus 354 ~~~e~Q~i~~~~~~~~vVe~~~~~~dVP-ygD~F~ve---~r~~i~~~~~~~~~~c~l~V~~~V~F~K 417 (442)
......+....++..+++..+.....+| .-++-+++ +.|.+..... .+++|++...+.+...+
T Consensus 114 DfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~-~~~~t~vt~~~~~Dp~G 180 (209)
T cd08906 114 DFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS-NPSVCTFIWILNTDLKG 180 (209)
T ss_pred ceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC-CCCceEEEEEEecCCCC
Confidence 2222333333333333455555555555 45555566 3455555311 23689998888877653
No 45
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=31.56 E-value=4.4e+02 Score=24.67 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=33.6
Q ss_pred cCCeEEEEEEEEeCCCCCCCc-eEE---EEEEEEEecCCCCCCceEEEEEEEEEEee
Q 013482 365 RNSHLVIETSQEVHDVPYGDY-FRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSK 417 (442)
Q Consensus 365 ~~~~~vVe~~~~~~dVPygD~-F~v---e~r~~i~~~~~~~~~~c~l~V~~~V~F~K 417 (442)
++..+++..+...+++|-..- -++ ...|.|+..++ ++|++...+.+....
T Consensus 121 ~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~---~~t~vt~~~~~Dp~G 174 (222)
T cd08871 121 GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP---KGCTLTYVTQNDPKG 174 (222)
T ss_pred CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC---CCEEEEEEEecCCCC
Confidence 333355666666678886554 332 35689998764 589999888888764
No 46
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=30.08 E-value=22 Score=21.17 Aligned_cols=11 Identities=18% Similarity=0.763 Sum_probs=9.0
Q ss_pred hHhhHHhhhhC
Q 013482 64 TLRSEEYRQLF 74 (442)
Q Consensus 64 ~~~~~~f~~lF 74 (442)
.+-|++||++|
T Consensus 9 p~SNddFrkmf 19 (21)
T PF05391_consen 9 PKSNDDFRKMF 19 (21)
T ss_pred ccchHHHHHHH
Confidence 45699999998
No 47
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=28.46 E-value=4.5e+02 Score=23.85 Aligned_cols=121 Identities=8% Similarity=-0.009 Sum_probs=61.8
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCCCceeeEEEEEeeeee-cCCCceeeeeEEEEEEE
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKV-YFGAKFGSCKETQKFRV 363 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~~~~~R~vsY~~pl~~-~iGpk~t~~~e~Q~i~~ 363 (442)
...+++.++.++|..+|.|.. ...++.......++ +... ..+ .+-+.|...... |+.+..- |. ..+...
T Consensus 49 ~~~~v~~~~~~~~~~~~~d~~--~r~~Wd~~~~~~~~-ie~~---~~~--~~i~~~~~~~~~~p~~~RDf-v~-~r~~~~ 118 (206)
T smart00234 49 AVGVVPMVCADLVEELMDDLR--YRPEWDKNVAKAET-LEVI---DNG--TVIYHYVSKFVAGPVSPRDF-VF-VRYWRE 118 (206)
T ss_pred EEEEEecChHHHHHHHHhccc--chhhCchhcccEEE-EEEE---CCC--CeEEEEEEecccCcCCCCeE-EE-EEEEEE
Confidence 457888888887777776642 33333222222111 1111 112 222223332222 4444321 11 222222
Q ss_pred ecCCeEEEEE-EEEeCCCC-CCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482 364 YRNSHLVIET-SQEVHDVP-YGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418 (442)
Q Consensus 364 ~~~~~~vVe~-~~~~~dVP-ygD~F~---ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks 418 (442)
..++.|+|.. +...+.+| -..+-+ ....|+|+..++ +.|++.....+....+
T Consensus 119 ~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~---~~t~vt~~~~~D~~G~ 175 (206)
T smart00234 119 LVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN---GPSKVTWVSHADLKGW 175 (206)
T ss_pred cCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC---CCeEEEEEEEEecCCC
Confidence 3445555443 55556666 344443 457799999865 4699999999888653
No 48
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=26.98 E-value=4.6e+02 Score=24.91 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=38.5
Q ss_pred CCeEEEEEEEEeCCCCCCC---ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeeec
Q 013482 366 NSHLVIETSQEVHDVPYGD---YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (442)
Q Consensus 366 ~~~~vVe~~~~~~dVPygD---~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Kst 419 (442)
+..+++..+..-.+.|.-- .-...++|.|++.++ ++|+|.-..+|.+.++.
T Consensus 126 g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~---g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 126 GGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM---GRSRLTHICRADLRGRS 179 (205)
T ss_pred CCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC---CCeEEEEEEEeCCCCCC
Confidence 4456677777767777654 455678999999865 68999999999997654
No 49
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=26.00 E-value=3.6e+02 Score=21.94 Aligned_cols=73 Identities=19% Similarity=0.421 Sum_probs=45.3
Q ss_pred EEEEEeecceeeeEEEEecceEEEEeccCCceeEEEEeccccccccccc----cccccCcEEEEEeC---CeEEEEeecC
Q 013482 86 FNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAK----TAGIFPNAIEIFAA---GKKYFFASFL 158 (442)
Q Consensus 86 f~Cal~~~i~~~GrlYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~----~~~~~pnaI~I~t~---~~~~~F~sF~ 158 (442)
..|.+.. -+|-||..++.|-|-- .+--+.|+++||..|+-.. +.+-| -+.|.++ +..+.|.+.-
T Consensus 4 V~c~~ka---~~g~L~pl~~~l~f~~----~kP~~~i~~~dI~~v~feRv~~~~~ktF--Dl~v~~k~~~~~~~~fs~I~ 74 (95)
T PF08512_consen 4 VKCSYKA---NEGFLYPLEKCLLFGL----EKPPFVIPLDDIESVEFERVSSFSSKTF--DLVVILKDYEGPPHEFSSID 74 (95)
T ss_dssp EEEEETT---EEEEEEEESSEEEEEC----SSS-EEEEGGGEEEEEEE--ESSSSSEE--EEEEEETT-TS-EEEEEEEE
T ss_pred eeEeccc---cCEEEEEccceEEEec----CCCeEEEEhhHeeEEEEEecccCcceEE--EEEEEEecCCCCcEEEeeEC
Confidence 4566554 3699999999665521 1235799999999988743 22223 4666665 4789998874
Q ss_pred CHHHHHHHHHH
Q 013482 159 SRDEAFKLITD 169 (442)
Q Consensus 159 ~rd~~~~li~~ 169 (442)
|++ |+.|.+
T Consensus 75 -~~e-~~~l~~ 83 (95)
T PF08512_consen 75 -REE-YDNLKD 83 (95)
T ss_dssp -GGG-HHHHHH
T ss_pred -HHH-HHHHHH
Confidence 332 455555
No 50
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.26 E-value=2.8e+02 Score=20.46 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=41.6
Q ss_pred eeEEEEecceEEEEeccCC---ceeEEEEeccccccccccccccccCcEEEEEeCC-eEEEEeecCCHHH
Q 013482 97 QGHMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDE 162 (442)
Q Consensus 97 ~GrlYis~~~icF~S~~~g---~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~-~~~~F~sF~~rd~ 162 (442)
...+++..+.|.++....+ ......|++.+ ..|.......-.++++.|.+.+ ..|.|. ..+.++
T Consensus 18 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~ 85 (96)
T cd00821 18 RRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQ-AESEEE 85 (96)
T ss_pred EEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEE-eCCHHH
Confidence 3456667777777776554 45667888888 5555554322246799999876 778875 334443
No 51
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=24.76 E-value=2.9e+02 Score=22.92 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=35.1
Q ss_pred eEEEEecc--C---CceeEEEEeccccccccccccccccCcEEEEEeCCeEEEEee
Q 013482 106 FICFYSNI--F---GFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFAS 156 (442)
Q Consensus 106 ~icF~S~~--~---g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~~~~F~s 156 (442)
.|++|-+- + +..-+-+|++.++..|.+.... --.++|.|.|.+..|.|+.
T Consensus 31 ~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~-k~~~~f~i~t~dr~f~l~a 85 (101)
T cd01257 31 RLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADA-KHRHLIALYTRDEYFAVAA 85 (101)
T ss_pred eEEEECChhhccccCCCceEEEEccceEEEeecccc-ccCeEEEEEeCCceEEEEe
Confidence 57777542 1 2345679999999999876432 2357999999887777754
No 52
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=24.53 E-value=6e+02 Score=23.95 Aligned_cols=116 Identities=4% Similarity=-0.029 Sum_probs=60.5
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCceeEeccceecCC-CceeeEEEEEeeeeecCCCceeeeeEEEEEEE
Q 013482 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (442)
Q Consensus 285 ~e~~f~isv~~lF~llFsd~s~~f~~~~~~~~g~~di~~tpW~~~~~-~~~~R~vsY~~pl~~~iGpk~t~~~e~Q~i~~ 363 (442)
.+.+++.++.++..++..+. .-+...+. .|..-+. +....-+.|....-.|+ ++.--|.. .....
T Consensus 56 ~~~~i~a~~~~vl~~lld~~--~~Wd~~~~----------e~~vIe~ld~~~~I~Yy~~~~PwP~-~~RD~V~~-Rs~~~ 121 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKEQ--HLWDVDLL----------DSKVIEILDSQTEIYQYVQNSMAPH-PARDYVVL-RTWRT 121 (204)
T ss_pred EEEEeCCCHHHHHHHHHhhH--HHHHHHhh----------heEeeEecCCCceEEEEEccCCCCC-CCcEEEEE-EEEEE
Confidence 45788999999999886662 21222221 1221111 11233344432222222 21111221 11111
Q ss_pred -ecCCeEEEEEE-EEeCCCCCCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeee
Q 013482 364 -YRNSHLVIETS-QEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418 (442)
Q Consensus 364 -~~~~~~vVe~~-~~~~dVPygD~F~---ve~r~~i~~~~~~~~~~c~l~V~~~V~F~Ks 418 (442)
..++.++|... ..-..+|-. +-+ +..+|.|++.++ ++|+|..-+.+...++
T Consensus 122 ~~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~---g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 122 NLPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGS---GKSKLTYMCRIDLRGH 177 (204)
T ss_pred eCCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCC---CcEEEEEEEEeCCCCC
Confidence 23344544444 666778844 555 468899999864 6899999888887543
No 53
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.75 E-value=2.4e+02 Score=24.37 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=30.3
Q ss_pred CceeEEEEecccccccccccccc----ccCcEEEEEeCCeEEEE
Q 013482 115 GFETKKIIPFYEVTAVRRAKTAG----IFPNAIEIFAAGKKYFF 154 (442)
Q Consensus 115 g~~~k~~I~~~dI~~I~k~~~~~----~~pnaI~I~t~~~~~~F 154 (442)
|.+--..|||.||.+|+-.++.. --++..+|.|.+..|+-
T Consensus 36 ~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~V 79 (117)
T cd01239 36 GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYFV 79 (117)
T ss_pred CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEEe
Confidence 55666799999999998654432 35679999998777665
No 54
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.64 E-value=3.1e+02 Score=22.13 Aligned_cols=50 Identities=6% Similarity=0.087 Sum_probs=34.1
Q ss_pred ceEEEEeccCCceeEEEEeccccccccccccccccCcEEEEEeCCeEEEEeec
Q 013482 105 HFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (442)
Q Consensus 105 ~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I~t~~~~~~F~sF 157 (442)
++|++|..--..+-.=+|++..+..+.+... -++.+.|.|.+..|.|..-
T Consensus 29 ~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~---~~~~F~i~t~~r~y~l~A~ 78 (95)
T cd01265 29 CYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE---EKGRFEIHSNNEVIALKAS 78 (95)
T ss_pred cEEEEECCCCcccccceEECCccEEEcCCCC---CCCEEEEEcCCcEEEEECC
Confidence 4677776544445556788888665544432 2678999999988988664
No 55
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.24 E-value=3.3e+02 Score=23.14 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=42.3
Q ss_pred EEEecceEEEEeccCCceeEEEEeccccccccccccc-----------cccCcEEEEEeCCeEEEEeecCCHH
Q 013482 100 MYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTA-----------GIFPNAIEIFAAGKKYFFASFLSRD 161 (442)
Q Consensus 100 lYis~~~icF~S~~~g~~~k~~I~~~dI~~I~k~~~~-----------~~~pnaI~I~t~~~~~~F~sF~~rd 161 (442)
+.|.+.+|+++...++...+=+|.|+.--.|+..... .-..++|.|.|...+|.+..=-.|+
T Consensus 38 Fvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~ 110 (121)
T cd01254 38 FIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRK 110 (121)
T ss_pred EEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHH
Confidence 4567888888888777666677777776666644331 1234689999998888886544443
No 56
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=21.71 E-value=1.4e+02 Score=26.19 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=22.1
Q ss_pred eEEEEecceEEEEec-cCCceeEEEEecccccc--cccc
Q 013482 98 GHMYLFVHFICFYSN-IFGFETKKIIPFYEVTA--VRRA 133 (442)
Q Consensus 98 GrlYis~~~icF~S~-~~g~~~k~~I~~~dI~~--I~k~ 133 (442)
|.|||++..|-|.++ -. .+-+.||+..|.- |.+.
T Consensus 1 g~L~Vt~~~l~w~~~~~~--~~G~~ipY~sI~lHAisr~ 37 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDS--SKGFSIPYPSISLHAISRD 37 (135)
T ss_dssp EEEEEETTEEEEEET--T--TEEEEESS---SEEE--SS
T ss_pred CEEEEecCEEEEECCCcC--CcceeecCCeEEEEEeecC
Confidence 889999999999983 22 4668899988864 5553
No 57
>KOG3238 consensus Chloride ion current inducer protein [Inorganic ion transport and metabolism]
Probab=20.89 E-value=1e+02 Score=28.99 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEEeecceeeeEEEEecceEEEEe
Q 013482 85 DFNCAFQESILLQGHMYLFVHFICFYS 111 (442)
Q Consensus 85 ~f~Cal~~~i~~~GrlYis~~~icF~S 111 (442)
.....|.++++-.|.|||+++.|-..+
T Consensus 23 n~~a~ln~kvlg~GTlYIa~s~LsWl~ 49 (216)
T KOG3238|consen 23 NTKAVLNRKVLGTGTLYIAESTLSWLS 49 (216)
T ss_pred chheeecCcccccceEEEecceEEeee
Confidence 334556678999999999999998877
No 58
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.80 E-value=4.9e+02 Score=21.55 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=24.4
Q ss_pred CCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 013482 383 GDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (442)
Q Consensus 383 gD~F~ve~r~~i~~~~~~~~~~c~l~V~~~V~F~ 416 (442)
+..+....+|.++..+ ++|+|.....+.+.
T Consensus 84 ~~~~~~~~~~~l~~~~----~gT~v~~~~~~~~~ 113 (144)
T cd05018 84 AGFVKGTARVTLEPDG----GGTRLTYTADAQVG 113 (144)
T ss_pred CceEEEEEEEEEEecC----CcEEEEEEEEEEEc
Confidence 4557899999999873 47999999999875
No 59
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=20.62 E-value=84 Score=30.53 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=38.4
Q ss_pred ceeeeEEEEecceEEEEecc-CCceeEEEEeccccccccccccccccCcEEEE
Q 013482 94 ILLQGHMYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKTAGIFPNAIEI 145 (442)
Q Consensus 94 i~~~GrlYis~~~icF~S~~-~g~~~k~~I~~~dI~~I~k~~~~~~~pnaI~I 145 (442)
.-..|.||+|...|-|-+.- -.+-..+.+||.-+.+++-.+. .+-.|-|.=
T Consensus 45 g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQP-vF~aNyikG 96 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQP-VFGANYIKG 96 (261)
T ss_pred cceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCc-ccccceeee
Confidence 34579999999999999875 3345678999999999987764 344565543
Done!