Query 013483
Match_columns 442
No_of_seqs 189 out of 2549
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02241 glucose-1-phosphate a 100.0 1.8E-61 3.8E-66 487.0 44.6 435 6-442 1-436 (436)
2 COG0448 GlgC ADP-glucose pyrop 100.0 2E-61 4.3E-66 455.9 35.9 386 6-441 3-392 (393)
3 PRK02862 glgC glucose-1-phosph 100.0 1.3E-58 2.8E-63 464.9 43.1 428 6-442 1-429 (429)
4 KOG1322 GDP-mannose pyrophosph 100.0 1.5E-55 3.3E-60 400.6 31.9 360 7-436 8-370 (371)
5 PRK05293 glgC glucose-1-phosph 100.0 2.7E-53 5.9E-58 422.3 39.2 372 6-442 1-379 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 8.9E-53 1.9E-57 420.8 39.9 385 5-436 2-407 (407)
7 PRK00725 glgC glucose-1-phosph 100.0 8.4E-52 1.8E-56 415.1 39.5 388 4-436 11-419 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 3.3E-51 7.1E-56 399.7 35.8 351 8-441 1-356 (358)
9 COG1207 GlmU N-acetylglucosami 100.0 6.3E-50 1.4E-54 377.0 29.0 382 7-442 1-430 (460)
10 TIGR02092 glgD glucose-1-phosp 100.0 2.2E-48 4.8E-53 385.4 36.7 351 7-408 1-356 (369)
11 TIGR02091 glgC glucose-1-phosp 100.0 6.5E-48 1.4E-52 381.2 36.8 356 11-407 1-361 (361)
12 TIGR01208 rmlA_long glucose-1- 100.0 8.1E-45 1.7E-49 357.8 34.1 234 10-290 1-238 (353)
13 PRK14355 glmU bifunctional N-a 100.0 2.7E-44 5.9E-49 365.9 34.6 389 6-442 1-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 1.9E-44 4.1E-49 368.8 32.7 389 6-442 2-432 (482)
15 PRK14358 glmU bifunctional N-a 100.0 3.9E-44 8.5E-49 365.1 31.8 389 1-442 1-432 (481)
16 PRK14359 glmU bifunctional N-a 100.0 5.5E-43 1.2E-47 354.2 35.2 375 7-442 1-400 (430)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 7E-43 1.5E-47 355.7 31.7 380 9-442 1-423 (451)
18 PRK09451 glmU bifunctional N-a 100.0 6.7E-43 1.5E-47 355.6 29.4 382 6-442 3-427 (456)
19 PRK14356 glmU bifunctional N-a 100.0 1E-41 2.2E-46 347.3 31.1 385 7-442 4-431 (456)
20 KOG1462 Translation initiation 100.0 2.2E-42 4.7E-47 320.6 22.3 348 5-407 6-402 (433)
21 KOG1460 GDP-mannose pyrophosph 100.0 2.7E-42 5.9E-47 308.9 21.2 326 7-408 1-358 (407)
22 PRK14353 glmU bifunctional N-a 100.0 6.7E-41 1.5E-45 340.3 33.6 382 6-442 3-413 (446)
23 PRK14357 glmU bifunctional N-a 100.0 1.2E-40 2.5E-45 338.8 32.3 375 9-442 1-416 (448)
24 PRK14354 glmU bifunctional N-a 100.0 3E-40 6.5E-45 336.8 32.6 384 7-442 1-426 (458)
25 PRK14360 glmU bifunctional N-a 100.0 8E-40 1.7E-44 332.9 32.6 381 9-442 2-423 (450)
26 KOG1461 Translation initiation 100.0 1.3E-39 2.8E-44 318.9 28.9 380 6-442 22-423 (673)
27 COG1209 RfbA dTDP-glucose pyro 100.0 2.7E-40 5.9E-45 296.1 20.4 233 9-288 1-237 (286)
28 TIGR01105 galF UTP-glucose-1-p 100.0 4.1E-37 9E-42 292.7 24.6 244 6-287 1-277 (297)
29 PF00483 NTP_transferase: Nucl 100.0 1.9E-36 4.2E-41 283.9 22.6 241 10-288 1-247 (248)
30 PRK10122 GalU regulator GalF; 100.0 6.2E-36 1.4E-40 285.4 24.2 244 6-287 1-277 (297)
31 cd06425 M1P_guanylylT_B_like_N 100.0 1.8E-35 3.9E-40 274.6 24.0 232 9-287 1-233 (233)
32 cd06428 M1P_guanylylT_A_like_N 100.0 4.4E-35 9.5E-40 275.9 23.5 235 11-286 1-257 (257)
33 PRK15480 glucose-1-phosphate t 100.0 9.3E-35 2E-39 275.9 24.6 235 6-287 1-241 (292)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 3E-34 6.5E-39 267.6 23.5 232 9-287 1-238 (240)
35 TIGR02623 G1P_cyt_trans glucos 100.0 7.5E-34 1.6E-38 266.4 24.3 234 10-290 1-248 (254)
36 TIGR01207 rmlA glucose-1-phosp 100.0 5.7E-34 1.2E-38 270.2 22.7 231 10-287 1-237 (286)
37 PRK13389 UTP--glucose-1-phosph 100.0 1.4E-33 3.1E-38 269.6 24.4 247 4-287 4-280 (302)
38 cd02541 UGPase_prokaryotic Pro 100.0 1.5E-33 3.2E-38 267.2 22.7 244 9-287 1-265 (267)
39 COG1210 GalU UDP-glucose pyrop 100.0 1.3E-33 2.8E-38 253.2 17.7 249 6-290 2-273 (291)
40 TIGR01099 galU UTP-glucose-1-p 100.0 5.2E-33 1.1E-37 262.5 21.5 240 9-282 1-260 (260)
41 cd02524 G1P_cytidylyltransfera 100.0 1.2E-32 2.6E-37 258.6 23.8 243 11-289 1-248 (253)
42 cd06422 NTP_transferase_like_1 100.0 7.8E-33 1.7E-37 254.9 20.2 219 10-282 1-221 (221)
43 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.8E-32 6.1E-37 253.7 24.0 232 9-288 1-235 (236)
44 cd06915 NTP_transferase_WcbM_l 100.0 1.5E-31 3.4E-36 246.4 21.3 223 11-283 1-223 (223)
45 cd04181 NTP_transferase NTP_tr 100.0 4.4E-31 9.4E-36 242.4 21.6 217 11-274 1-217 (217)
46 cd06426 NTP_transferase_like_2 100.0 9.1E-31 2E-35 240.9 21.8 219 11-283 1-220 (220)
47 cd04197 eIF-2B_epsilon_N The N 100.0 3.9E-30 8.5E-35 236.0 17.4 205 9-233 1-217 (217)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 3E-28 6.6E-33 220.6 19.3 199 11-273 1-200 (200)
49 cd02523 PC_cytidylyltransferas 100.0 1.8E-28 4E-33 227.0 18.1 222 11-283 1-229 (229)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 6.8E-28 1.5E-32 223.5 20.5 222 11-279 1-230 (231)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 2.1E-26 4.6E-31 218.0 16.6 233 9-278 1-273 (274)
52 cd02507 eIF-2B_gamma_N_like Th 99.9 2.4E-26 5.1E-31 210.5 16.0 204 9-233 1-216 (216)
53 cd04198 eIF-2B_gamma_N The N-t 99.9 1.2E-25 2.6E-30 205.7 15.5 201 9-233 1-214 (214)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 2.6E-24 5.7E-29 199.1 19.8 221 11-279 1-229 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 4.2E-24 9.2E-29 216.2 20.5 241 9-284 1-282 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 6.9E-23 1.5E-27 191.6 20.9 235 7-286 1-244 (245)
57 COG1213 Predicted sugar nucleo 99.9 5E-23 1.1E-27 182.0 15.1 223 6-288 1-230 (239)
58 cd02517 CMP-KDO-Synthetase CMP 99.9 3.6E-22 7.9E-27 186.0 19.9 227 8-284 1-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 1.4E-20 3E-25 175.3 20.2 225 8-285 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.9 8.1E-21 1.7E-25 190.5 17.2 244 7-283 4-290 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.8 3.9E-20 8.5E-25 170.4 17.6 243 8-285 1-284 (333)
62 COG4750 LicC CTP:phosphocholin 99.8 2.4E-19 5.2E-24 151.9 12.7 219 9-287 1-226 (231)
63 COG1043 LpxA Acyl-[acyl carrie 99.8 5.9E-19 1.3E-23 155.2 11.7 144 295-442 11-175 (260)
64 PLN02917 CMP-KDO synthetase 99.8 3E-17 6.5E-22 156.2 21.4 233 7-288 46-289 (293)
65 PRK12461 UDP-N-acetylglucosami 99.7 8.8E-17 1.9E-21 149.6 13.2 145 298-442 4-170 (255)
66 PRK05289 UDP-N-acetylglucosami 99.7 7.3E-17 1.6E-21 151.4 12.1 147 296-442 5-174 (262)
67 PRK00155 ispD 2-C-methyl-D-ery 99.7 1.8E-15 3.8E-20 139.8 17.0 219 6-288 1-224 (227)
68 TIGR00453 ispD 2-C-methyl-D-er 99.7 2E-15 4.3E-20 138.5 16.6 211 10-285 1-216 (217)
69 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.7 1.2E-15 2.6E-20 143.0 13.0 142 297-442 9-171 (254)
70 TIGR00466 kdsB 3-deoxy-D-manno 99.6 1.4E-14 3E-19 134.5 19.2 226 11-279 2-237 (238)
71 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 1.2E-15 2.5E-20 140.0 11.7 147 249-429 31-193 (231)
72 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 4.1E-15 8.9E-20 143.4 14.4 174 269-442 66-286 (324)
73 cd02516 CDP-ME_synthetase CDP- 99.6 1.1E-14 2.3E-19 133.8 15.5 212 10-281 2-217 (218)
74 TIGR01852 lipid_A_lpxA acyl-[a 99.6 5.2E-15 1.1E-19 138.7 13.4 142 297-442 8-170 (254)
75 PRK13385 2-C-methyl-D-erythrit 99.6 3.2E-14 7E-19 131.6 17.0 218 8-287 2-224 (230)
76 PRK09382 ispDF bifunctional 2- 99.6 3.4E-14 7.4E-19 139.4 17.9 208 6-288 3-214 (378)
77 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 1.2E-14 2.7E-19 130.7 13.0 145 295-442 23-177 (193)
78 TIGR00454 conserved hypothetic 99.6 8.8E-15 1.9E-19 129.9 11.7 124 9-164 1-126 (183)
79 PF12804 NTP_transf_3: MobA-li 99.6 7.6E-15 1.6E-19 127.9 10.8 120 11-163 1-122 (160)
80 cd05636 LbH_G1P_TT_C_like Puta 99.6 2.7E-14 5.8E-19 124.8 13.5 126 298-442 10-162 (163)
81 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 2.5E-14 5.3E-19 139.9 14.6 63 380-442 226-294 (343)
82 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 4.5E-14 9.7E-19 131.9 13.7 51 391-441 237-292 (338)
83 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.6E-13 3.5E-18 126.3 16.9 218 8-285 1-222 (223)
84 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 4.9E-14 1.1E-18 131.7 12.6 62 380-441 203-274 (338)
85 TIGR03310 matur_ygfJ molybdenu 99.5 1.8E-13 4E-18 122.4 14.8 119 11-159 2-122 (188)
86 PRK00317 mobA molybdopterin-gu 99.5 8.4E-13 1.8E-17 118.8 15.7 113 6-153 1-115 (193)
87 PLN02728 2-C-methyl-D-erythrit 99.5 8.6E-13 1.9E-17 122.8 16.0 218 6-287 22-245 (252)
88 cd03352 LbH_LpxD UDP-3-O-acyl- 99.5 4E-13 8.7E-18 122.0 13.2 145 296-442 10-183 (205)
89 cd04182 GT_2_like_f GT_2_like_ 99.5 2.6E-13 5.6E-18 121.1 11.2 122 9-160 1-124 (186)
90 PRK02726 molybdopterin-guanine 99.4 7.4E-12 1.6E-16 113.1 15.9 115 4-153 3-119 (200)
91 PRK00560 molybdopterin-guanine 99.4 3.6E-12 7.9E-17 114.7 13.8 109 1-148 1-112 (196)
92 COG2068 Uncharacterized MobA-r 99.4 8.9E-12 1.9E-16 108.8 14.4 121 6-155 3-125 (199)
93 cd04651 LbH_G1P_AT_C Glucose-1 99.4 6.9E-12 1.5E-16 100.7 12.0 101 312-435 2-103 (104)
94 TIGR01852 lipid_A_lpxA acyl-[a 99.4 8.3E-12 1.8E-16 117.1 13.2 137 297-439 20-183 (254)
95 TIGR03584 PseF pseudaminic aci 99.4 8.5E-11 1.8E-15 107.8 19.0 215 11-286 2-220 (222)
96 cd02503 MobA MobA catalyzes th 99.3 3.9E-12 8.5E-17 113.1 9.7 107 9-152 1-109 (181)
97 COG1212 KdsB CMP-2-keto-3-deox 99.3 6.7E-11 1.5E-15 104.0 16.4 235 7-288 2-244 (247)
98 PF01128 IspD: 2-C-methyl-D-er 99.3 1.1E-10 2.5E-15 105.9 18.6 213 9-286 1-219 (221)
99 COG2266 GTP:adenosylcobinamide 99.3 8.7E-12 1.9E-16 105.7 10.4 110 9-153 1-112 (177)
100 COG1211 IspD 4-diphosphocytidy 99.3 1.1E-10 2.5E-15 105.4 18.3 223 6-287 2-227 (230)
101 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.3 1.4E-11 3E-16 115.5 12.7 116 321-442 23-153 (254)
102 cd04646 LbH_Dynactin_6 Dynacti 99.3 2.2E-11 4.7E-16 106.2 13.0 95 321-440 17-126 (164)
103 TIGR02287 PaaY phenylacetic ac 99.3 1.7E-11 3.7E-16 109.2 12.4 111 301-440 10-129 (192)
104 PLN02296 carbonate dehydratase 99.3 1.5E-11 3.2E-16 114.9 12.3 113 299-440 52-179 (269)
105 PRK14489 putative bifunctional 99.3 4.5E-11 9.8E-16 117.8 16.4 120 6-158 3-124 (366)
106 PRK12461 UDP-N-acetylglucosami 99.3 1.1E-11 2.3E-16 115.6 10.9 62 380-441 78-151 (255)
107 cd04745 LbH_paaY_like paaY-lik 99.3 2.4E-11 5.2E-16 105.1 12.5 96 321-441 18-122 (155)
108 PLN02472 uncharacterized prote 99.3 1.7E-11 3.8E-16 112.9 11.8 113 300-441 60-187 (246)
109 PRK05289 UDP-N-acetylglucosami 99.3 2E-11 4.3E-16 114.7 12.3 12 430-441 144-155 (262)
110 cd00710 LbH_gamma_CA Gamma car 99.3 3.7E-11 8.1E-16 105.2 13.1 111 302-441 5-130 (167)
111 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 1.8E-11 3.8E-16 112.6 11.3 11 430-440 225-235 (269)
112 COG0746 MobA Molybdopterin-gua 99.3 4.3E-11 9.4E-16 106.5 13.5 111 6-154 2-114 (192)
113 TIGR03202 pucB xanthine dehydr 99.3 2.8E-11 6E-16 108.6 12.2 125 9-158 1-127 (190)
114 COG1207 GlmU N-acetylglucosami 99.3 1.2E-11 2.6E-16 118.3 9.9 62 380-441 327-411 (460)
115 cd05636 LbH_G1P_TT_C_like Puta 99.3 3.7E-11 8.1E-16 104.9 11.8 103 321-442 17-144 (163)
116 COG0663 PaaY Carbonic anhydras 99.3 4.6E-11 1E-15 102.1 11.9 110 301-439 13-131 (176)
117 TIGR01853 lipid_A_lpxD UDP-3-O 99.3 2.9E-11 6.4E-16 116.7 12.1 134 301-437 117-297 (324)
118 COG0663 PaaY Carbonic anhydras 99.3 2.7E-11 5.9E-16 103.5 10.4 82 336-442 28-122 (176)
119 TIGR03308 phn_thr-fam phosphon 99.3 3.7E-11 7.9E-16 108.3 11.8 87 337-442 19-141 (204)
120 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 4.7E-11 1E-15 107.4 12.0 118 305-442 15-159 (193)
121 PRK00892 lpxD UDP-3-O-[3-hydro 99.3 4.2E-11 9.1E-16 117.2 11.9 171 272-442 76-276 (343)
122 TIGR02665 molyb_mobA molybdopt 99.3 2.6E-11 5.6E-16 108.4 9.5 116 9-157 1-118 (186)
123 cd02518 GT2_SpsF SpsF is a gly 99.2 3.2E-10 7E-15 105.1 16.8 115 11-160 2-121 (233)
124 PRK13627 carnitine operon prot 99.2 5.2E-11 1.1E-15 106.4 10.9 107 304-439 15-130 (196)
125 PRK14490 putative bifunctional 99.2 2E-10 4.3E-15 113.5 16.0 110 5-150 171-282 (369)
126 PRK13627 carnitine operon prot 99.2 9.5E-11 2.1E-15 104.7 12.4 92 322-442 17-121 (196)
127 PRK14353 glmU bifunctional N-a 99.2 5.6E-11 1.2E-15 121.1 12.3 122 301-437 282-414 (446)
128 PRK14358 glmU bifunctional N-a 99.2 6.1E-11 1.3E-15 121.5 12.7 154 270-442 219-414 (481)
129 cd04646 LbH_Dynactin_6 Dynacti 99.2 5E-11 1.1E-15 103.9 10.2 82 336-442 16-116 (164)
130 cd04650 LbH_FBP Ferripyochelin 99.2 1.3E-10 2.7E-15 100.3 12.5 95 321-440 18-121 (154)
131 cd04645 LbH_gamma_CA_like Gamm 99.2 1.8E-10 3.9E-15 99.5 13.4 95 321-440 17-120 (153)
132 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 9.8E-11 2.1E-15 108.8 11.2 128 300-440 104-238 (272)
133 TIGR01173 glmU UDP-N-acetylglu 99.2 6.2E-11 1.3E-15 121.0 11.0 119 304-442 260-405 (451)
134 TIGR02287 PaaY phenylacetic ac 99.2 9.2E-11 2E-15 104.4 10.6 82 336-442 25-119 (192)
135 PLN02296 carbonate dehydratase 99.2 9E-11 2E-15 109.6 11.0 82 336-442 69-169 (269)
136 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.4E-10 3E-15 88.7 9.9 65 324-407 2-67 (81)
137 cd04745 LbH_paaY_like paaY-lik 99.2 1.5E-10 3.2E-15 100.2 11.0 96 322-441 7-110 (155)
138 cd03350 LbH_THP_succinylT 2,3, 99.2 2.1E-10 4.6E-15 97.3 11.5 52 380-434 76-131 (139)
139 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 1.9E-10 4.2E-15 104.4 11.9 63 380-442 93-165 (205)
140 PRK14356 glmU bifunctional N-a 99.2 1.2E-10 2.7E-15 118.9 11.4 120 304-442 268-413 (456)
141 TIGR00965 dapD 2,3,4,5-tetrahy 99.2 1.8E-10 3.8E-15 106.0 10.9 103 305-429 100-212 (269)
142 cd04649 LbH_THP_succinylT_puta 99.2 2.5E-10 5.5E-15 95.0 10.4 28 415-442 74-104 (147)
143 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.1 1.4E-10 3.1E-15 106.4 9.2 52 337-406 98-150 (231)
144 PLN02472 uncharacterized prote 99.1 3.6E-10 7.8E-15 104.2 11.5 93 321-442 65-176 (246)
145 cd03350 LbH_THP_succinylT 2,3, 99.1 5.8E-10 1.2E-14 94.6 11.8 93 322-441 14-122 (139)
146 TIGR03308 phn_thr-fam phosphon 99.1 5.5E-10 1.2E-14 100.7 12.3 58 296-354 11-70 (204)
147 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 3.5E-10 7.6E-15 86.4 9.2 76 309-403 3-80 (81)
148 PRK09451 glmU bifunctional N-a 99.1 2.4E-10 5.1E-15 116.7 10.3 118 305-442 265-409 (456)
149 COG1043 LpxA Acyl-[acyl carrie 99.1 6.7E-10 1.4E-14 98.5 11.0 130 301-442 5-157 (260)
150 PRK14500 putative bifunctional 99.1 1.2E-09 2.6E-14 106.1 13.8 109 8-152 160-270 (346)
151 PRK14352 glmU bifunctional N-a 99.1 3.8E-10 8.2E-15 116.0 10.4 63 380-442 329-414 (482)
152 TIGR03570 NeuD_NnaD sugar O-ac 99.1 1.6E-09 3.4E-14 97.9 13.2 84 322-429 100-186 (201)
153 cd00710 LbH_gamma_CA Gamma car 99.1 1.5E-09 3.2E-14 95.1 12.5 107 295-426 10-128 (167)
154 PRK14357 glmU bifunctional N-a 99.1 5E-10 1.1E-14 114.2 10.9 117 322-442 256-398 (448)
155 cd03359 LbH_Dynactin_5 Dynacti 99.1 2.2E-09 4.7E-14 93.5 12.7 94 322-440 22-132 (161)
156 PRK14355 glmU bifunctional N-a 99.1 1.1E-09 2.3E-14 112.0 12.2 138 297-437 278-441 (459)
157 cd03356 LbH_G1P_AT_C_like Left 99.1 9.3E-10 2E-14 83.6 8.8 65 324-407 2-67 (79)
158 cd04645 LbH_gamma_CA_like Gamm 99.0 1.9E-09 4.2E-14 93.0 11.5 91 322-441 6-109 (153)
159 PRK14360 glmU bifunctional N-a 99.0 9.6E-10 2.1E-14 112.2 11.2 63 380-442 320-405 (450)
160 KOG1461 Translation initiation 99.0 3.7E-10 8.1E-15 112.6 7.7 100 321-441 315-416 (673)
161 cd04650 LbH_FBP Ferripyochelin 99.0 1.9E-09 4.1E-14 93.0 11.2 80 337-441 18-110 (154)
162 cd04193 UDPGlcNAc_PPase UDPGlc 99.0 5.7E-09 1.2E-13 100.5 14.9 217 6-239 13-257 (323)
163 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 1E-09 2.2E-14 101.9 9.2 28 415-442 251-281 (341)
164 PRK14359 glmU bifunctional N-a 99.0 1.2E-09 2.5E-14 110.9 10.4 116 306-436 283-410 (430)
165 cd03360 LbH_AT_putative Putati 99.0 1.8E-09 3.9E-14 96.8 10.4 69 337-429 114-183 (197)
166 cd04651 LbH_G1P_AT_C Glucose-1 99.0 2.2E-09 4.8E-14 86.1 9.7 61 322-407 2-62 (104)
167 cd03358 LbH_WxcM_N_like WcxM-l 99.0 1.9E-09 4.1E-14 88.8 9.5 83 321-429 16-100 (119)
168 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 3.3E-09 7.2E-14 98.7 11.4 97 302-426 100-206 (272)
169 PRK14354 glmU bifunctional N-a 99.0 1.8E-09 4E-14 110.4 10.7 63 380-442 323-408 (458)
170 cd05787 LbH_eIF2B_epsilon eIF- 99.0 2.4E-09 5.2E-14 81.3 8.7 64 325-407 3-67 (79)
171 TIGR03535 DapD_actino 2,3,4,5- 99.0 2.7E-09 5.8E-14 98.6 10.4 83 337-442 165-256 (319)
172 cd03360 LbH_AT_putative Putati 99.0 8.4E-09 1.8E-13 92.4 13.4 12 430-441 171-182 (197)
173 cd03358 LbH_WxcM_N_like WcxM-l 99.0 2.6E-09 5.7E-14 88.0 9.3 63 380-442 23-100 (119)
174 cd03356 LbH_G1P_AT_C_like Left 99.0 3.9E-09 8.5E-14 80.1 9.1 75 308-401 2-79 (79)
175 cd04180 UGPase_euk_like Eukary 98.9 3.6E-08 7.8E-13 92.6 16.6 218 10-238 2-241 (266)
176 cd05787 LbH_eIF2B_epsilon eIF- 98.9 3.7E-09 8E-14 80.2 7.8 78 339-437 1-78 (79)
177 TIGR03570 NeuD_NnaD sugar O-ac 98.9 7.3E-09 1.6E-13 93.5 11.0 119 270-406 63-187 (201)
178 PRK10502 putative acyl transfe 98.9 5.8E-09 1.2E-13 92.6 9.8 40 322-361 52-97 (182)
179 cd05635 LbH_unknown Uncharacte 98.9 9.5E-09 2.1E-13 81.8 9.2 67 321-408 29-97 (101)
180 PLN02474 UTP--glucose-1-phosph 98.9 2.1E-07 4.5E-12 92.9 20.6 351 7-396 78-466 (469)
181 cd05824 LbH_M1P_guanylylT_C Ma 98.9 6.8E-09 1.5E-13 79.0 8.0 63 322-407 6-68 (80)
182 COG1045 CysE Serine acetyltran 98.9 6.2E-09 1.3E-13 90.1 8.1 52 391-442 94-152 (194)
183 cd03359 LbH_Dynactin_5 Dynacti 98.8 2E-08 4.4E-13 87.3 10.2 83 337-439 21-119 (161)
184 PRK11132 cysE serine acetyltra 98.8 2.5E-09 5.4E-14 99.5 4.7 24 337-360 161-184 (273)
185 cd05635 LbH_unknown Uncharacte 98.8 3.1E-08 6.7E-13 78.8 10.3 66 321-406 11-78 (101)
186 PLN02694 serine O-acetyltransf 98.8 1.9E-08 4.1E-13 93.7 10.3 24 337-360 180-203 (294)
187 PRK09527 lacA galactoside O-ac 98.8 1.6E-08 3.6E-13 90.6 9.6 69 337-429 75-164 (203)
188 COG2171 DapD Tetrahydrodipicol 98.8 1.3E-08 2.9E-13 92.2 8.2 41 377-429 180-221 (271)
189 cd04649 LbH_THP_succinylT_puta 98.8 6.9E-08 1.5E-12 80.5 11.5 51 302-353 10-63 (147)
190 PRK11132 cysE serine acetyltra 98.8 1.7E-08 3.6E-13 94.1 8.6 33 391-429 194-226 (273)
191 PRK09677 putative lipopolysacc 98.8 4.1E-08 8.8E-13 87.9 10.9 25 337-361 65-91 (192)
192 COG1083 NeuA CMP-N-acetylneura 98.8 1.8E-07 4E-12 81.9 14.3 220 6-288 1-224 (228)
193 PTZ00339 UDP-N-acetylglucosami 98.8 1.8E-07 3.8E-12 94.2 16.2 217 6-238 104-351 (482)
194 KOG3121 Dynactin, subunit p25 98.8 9.7E-09 2.1E-13 83.2 5.5 99 321-439 39-149 (184)
195 PRK10502 putative acyl transfe 98.8 5.9E-08 1.3E-12 86.1 10.9 94 303-407 55-153 (182)
196 cd05824 LbH_M1P_guanylylT_C Ma 98.8 6.8E-08 1.5E-12 73.5 9.4 62 321-401 17-80 (80)
197 PRK09677 putative lipopolysacc 98.7 1.3E-07 2.8E-12 84.7 12.0 35 321-355 65-103 (192)
198 PRK09527 lacA galactoside O-ac 98.7 9.8E-08 2.1E-12 85.6 11.1 103 302-413 58-166 (203)
199 PLN02739 serine acetyltransfer 98.7 3.3E-08 7.1E-13 93.9 7.5 69 337-429 211-290 (355)
200 KOG1462 Translation initiation 98.7 6E-08 1.3E-12 91.8 8.7 118 268-407 300-419 (433)
201 TIGR01172 cysE serine O-acetyl 98.7 1.1E-07 2.5E-12 82.6 9.6 72 338-436 82-156 (162)
202 TIGR01172 cysE serine O-acetyl 98.7 1.1E-07 2.3E-12 82.8 8.7 29 414-442 113-146 (162)
203 cd00208 LbetaH Left-handed par 98.6 1.4E-07 3.1E-12 71.0 8.3 32 324-355 3-36 (78)
204 cd03357 LbH_MAT_GAT Maltose O- 98.6 2.2E-07 4.8E-12 81.5 10.5 34 321-354 62-99 (169)
205 cd03354 LbH_SAT Serine acetylt 98.6 2.3E-07 5E-12 74.0 9.5 44 380-429 41-87 (101)
206 PLN02694 serine O-acetyltransf 98.6 1.1E-07 2.3E-12 88.7 8.1 42 389-436 211-255 (294)
207 cd03357 LbH_MAT_GAT Maltose O- 98.6 1.7E-07 3.7E-12 82.2 9.0 76 337-436 62-161 (169)
208 cd00208 LbetaH Left-handed par 98.6 2.7E-07 5.8E-12 69.5 8.8 51 338-406 1-60 (78)
209 PRK10092 maltose O-acetyltrans 98.6 1.3E-07 2.9E-12 83.6 8.0 94 305-407 59-158 (183)
210 PLN02357 serine acetyltransfer 98.6 2.3E-07 5E-12 88.9 10.0 65 338-406 247-312 (360)
211 TIGR03535 DapD_actino 2,3,4,5- 98.6 5.8E-07 1.3E-11 83.4 12.1 14 338-351 200-213 (319)
212 PLN02357 serine acetyltransfer 98.6 1.5E-07 3.3E-12 90.2 8.5 68 338-429 233-311 (360)
213 PRK10191 putative acyl transfe 98.6 2.2E-07 4.7E-12 78.8 7.8 69 337-429 47-125 (146)
214 COG2171 DapD Tetrahydrodipicol 98.6 2.8E-07 6.2E-12 83.7 8.8 24 338-361 139-162 (271)
215 PRK05293 glgC glucose-1-phosph 98.6 2.2E-07 4.7E-12 92.7 8.9 91 295-406 284-380 (380)
216 PRK10191 putative acyl transfe 98.6 3.7E-07 8.1E-12 77.4 9.0 73 322-407 48-121 (146)
217 cd04647 LbH_MAT_like Maltose O 98.5 5E-07 1.1E-11 72.9 9.1 33 323-355 3-39 (109)
218 PRK02862 glgC glucose-1-phosph 98.5 2.9E-07 6.2E-12 93.1 9.1 98 324-442 295-423 (429)
219 TIGR03536 DapD_gpp 2,3,4,5-tet 98.5 6.7E-07 1.5E-11 83.4 10.6 15 391-405 251-265 (341)
220 PLN02739 serine acetyltransfer 98.5 3.5E-07 7.5E-12 87.0 8.2 27 380-406 264-291 (355)
221 TIGR02091 glgC glucose-1-phosp 98.5 4.2E-07 9.1E-12 90.0 9.3 63 325-407 281-344 (361)
222 cd03354 LbH_SAT Serine acetylt 98.5 7.2E-07 1.6E-11 71.1 8.6 27 380-406 55-82 (101)
223 KOG4750 Serine O-acetyltransfe 98.5 2.1E-07 4.6E-12 81.6 5.8 79 343-442 148-233 (269)
224 cd05825 LbH_wcaF_like wcaF-lik 98.5 6.6E-07 1.4E-11 72.1 8.3 25 337-361 3-29 (107)
225 cd04647 LbH_MAT_like Maltose O 98.5 7.4E-07 1.6E-11 71.9 8.6 16 414-429 76-91 (109)
226 TIGR01208 rmlA_long glucose-1- 98.5 6.7E-07 1.5E-11 88.2 9.8 27 380-406 311-338 (353)
227 TIGR02092 glgD glucose-1-phosp 98.5 6.4E-07 1.4E-11 89.0 9.4 61 321-407 278-338 (369)
228 PRK10092 maltose O-acetyltrans 98.5 1.3E-06 2.8E-11 77.3 10.3 16 414-429 147-162 (183)
229 PRK00725 glgC glucose-1-phosph 98.4 5.1E-07 1.1E-11 91.2 8.2 67 333-426 323-389 (425)
230 COG1045 CysE Serine acetyltran 98.4 1.1E-06 2.4E-11 76.4 8.5 66 337-407 87-154 (194)
231 cd05825 LbH_wcaF_like wcaF-lik 98.4 3.1E-06 6.7E-11 68.2 9.7 33 322-354 4-40 (107)
232 COG1208 GCD1 Nucleoside-diphos 98.4 1.7E-06 3.6E-11 85.2 9.7 52 337-406 261-312 (358)
233 PRK00844 glgC glucose-1-phosph 98.4 1.2E-06 2.7E-11 88.0 8.6 68 335-429 313-380 (407)
234 PLN02241 glucose-1-phosphate a 98.4 1.6E-06 3.5E-11 87.9 9.4 92 327-439 305-420 (436)
235 cd00897 UGPase_euk Eukaryotic 98.3 1.7E-05 3.7E-10 75.3 15.5 215 7-239 2-234 (300)
236 COG0448 GlgC ADP-glucose pyrop 98.3 2.7E-06 5.9E-11 81.9 9.0 54 333-407 292-345 (393)
237 cd03349 LbH_XAT Xenobiotic acy 98.2 6.8E-06 1.5E-10 69.9 8.0 24 338-361 2-27 (145)
238 cd03349 LbH_XAT Xenobiotic acy 98.2 1.4E-05 3E-10 68.1 9.6 19 337-355 21-39 (145)
239 COG0110 WbbJ Acetyltransferase 98.2 5.7E-06 1.2E-10 74.0 7.7 87 321-429 67-157 (190)
240 PF07959 Fucokinase: L-fucokin 98.1 2.4E-05 5.1E-10 78.4 12.4 96 130-238 54-158 (414)
241 PF01704 UDPGP: UTP--glucose-1 98.1 5.6E-05 1.2E-09 75.4 14.5 218 6-239 54-289 (420)
242 PF02348 CTP_transf_3: Cytidyl 98.1 3.1E-05 6.7E-10 70.8 10.7 116 11-158 2-120 (217)
243 COG4284 UDP-glucose pyrophosph 98.1 8.4E-05 1.8E-09 73.3 13.9 213 7-236 104-337 (472)
244 PLN02435 probable UDP-N-acetyl 98.0 9.9E-05 2.2E-09 74.4 13.8 216 6-238 114-364 (493)
245 cd06424 UGGPase UGGPase cataly 98.0 0.0001 2.2E-09 70.3 12.6 221 10-239 2-253 (315)
246 COG0110 WbbJ Acetyltransferase 98.0 3.2E-05 6.9E-10 69.1 8.7 63 380-442 88-157 (190)
247 TIGR02353 NRPS_term_dom non-ri 97.9 4.3E-05 9.3E-10 81.5 9.5 99 321-432 112-215 (695)
248 PRK13412 fkp bifunctional fuco 97.9 0.00072 1.6E-08 73.5 18.3 196 131-356 154-373 (974)
249 KOG4042 Dynactin subunit p27/W 97.8 3.7E-05 8.1E-10 63.2 4.6 51 304-354 7-64 (190)
250 KOG1322 GDP-mannose pyrophosph 97.7 7.3E-05 1.6E-09 69.9 5.9 78 336-426 275-352 (371)
251 KOG1460 GDP-mannose pyrophosph 97.7 0.00017 3.6E-09 66.5 8.0 60 295-354 290-357 (407)
252 COG1861 SpsF Spore coat polysa 97.6 0.00056 1.2E-08 60.7 10.2 116 7-158 2-123 (241)
253 KOG4750 Serine O-acetyltransfe 97.6 0.00016 3.5E-09 63.8 6.6 60 337-406 168-228 (269)
254 PLN02830 UDP-sugar pyrophospho 97.6 0.0012 2.6E-08 68.7 14.0 167 7-179 127-323 (615)
255 TIGR02353 NRPS_term_dom non-ri 97.5 0.00021 4.6E-09 76.3 8.1 90 321-440 597-688 (695)
256 KOG4042 Dynactin subunit p27/W 97.5 0.00013 2.9E-09 60.0 4.7 67 322-388 9-87 (190)
257 KOG3121 Dynactin, subunit p25 97.5 0.00056 1.2E-08 55.9 7.8 30 337-366 39-71 (184)
258 PRK00576 molybdopterin-guanine 97.4 0.00066 1.4E-08 60.0 8.0 95 29-153 3-101 (178)
259 COG4801 Predicted acyltransfer 97.3 0.00089 1.9E-08 59.5 7.8 64 325-407 20-85 (277)
260 PF00132 Hexapep: Bacterial tr 97.2 0.00035 7.7E-09 43.9 3.2 15 391-405 20-34 (36)
261 COG4801 Predicted acyltransfer 97.2 0.0016 3.5E-08 57.9 7.8 67 323-407 35-103 (277)
262 PF00132 Hexapep: Bacterial tr 97.0 0.00073 1.6E-08 42.4 3.3 21 339-359 3-23 (36)
263 PF14602 Hexapep_2: Hexapeptid 96.4 0.0044 9.5E-08 38.3 3.1 14 339-352 3-16 (34)
264 KOG2638 UDP-glucose pyrophosph 95.9 1 2.2E-05 44.2 17.8 155 7-167 102-276 (498)
265 TIGR03552 F420_cofC 2-phospho- 95.0 0.059 1.3E-06 48.2 6.3 85 41-153 31-117 (195)
266 cd00761 Glyco_tranf_GTA_type G 94.7 0.41 8.9E-06 39.5 10.6 99 33-153 2-103 (156)
267 PF00535 Glycos_transf_2: Glyc 93.9 1 2.2E-05 38.0 11.4 109 33-163 3-114 (169)
268 PF07959 Fucokinase: L-fucokin 88.8 0.8 1.7E-05 46.1 5.7 25 258-282 226-251 (414)
269 cd04186 GT_2_like_c Subfamily 88.6 7 0.00015 32.8 10.9 98 33-155 2-102 (166)
270 cd06434 GT2_HAS Hyaluronan syn 86.5 7.6 0.00016 35.2 10.5 97 33-153 5-103 (235)
271 cd02525 Succinoglycan_BP_ExoA 85.6 8.1 0.00018 35.2 10.3 105 33-160 5-114 (249)
272 cd04179 DPM_DPG-synthase_like 84.3 7.6 0.00017 33.5 9.0 107 34-162 3-114 (185)
273 cd06442 DPM1_like DPM1_like re 82.5 16 0.00034 32.7 10.6 106 33-160 2-111 (224)
274 PLN02726 dolichyl-phosphate be 82.1 14 0.0003 33.9 10.2 48 108-161 79-127 (243)
275 cd06423 CESA_like CESA_like is 81.1 15 0.00032 30.7 9.5 102 33-155 2-106 (180)
276 cd06439 CESA_like_1 CESA_like_ 80.7 24 0.00052 32.2 11.3 107 23-153 22-135 (251)
277 KOG2388 UDP-N-acetylglucosamin 80.6 1.3 2.9E-05 44.3 2.9 43 6-51 95-139 (477)
278 cd06427 CESA_like_2 CESA_like_ 79.1 21 0.00045 32.6 10.3 110 33-163 6-120 (241)
279 cd02510 pp-GalNAc-T pp-GalNAc- 78.8 20 0.00043 34.1 10.4 105 33-157 3-113 (299)
280 cd04188 DPG_synthase DPG_synth 78.8 17 0.00037 32.3 9.4 109 33-162 2-117 (211)
281 COG1920 Predicted nucleotidylt 76.7 23 0.0005 31.3 8.8 104 9-151 1-110 (210)
282 PRK14583 hmsR N-glycosyltransf 73.9 25 0.00055 35.7 10.1 102 32-155 79-183 (444)
283 cd04192 GT_2_like_e Subfamily 73.1 34 0.00074 30.4 9.9 105 33-157 2-112 (229)
284 PRK11204 N-glycosyltransferase 72.7 28 0.0006 35.0 10.0 102 32-155 58-162 (420)
285 cd06433 GT_2_WfgS_like WfgS an 72.3 34 0.00074 29.5 9.5 97 34-155 4-103 (202)
286 PRK10073 putative glycosyl tra 71.0 42 0.00092 32.6 10.5 106 33-161 11-119 (328)
287 cd04187 DPM1_like_bac Bacteria 70.7 34 0.00075 29.4 9.0 46 108-160 66-112 (181)
288 cd04184 GT2_RfbC_Mx_like Myxoc 68.9 42 0.00091 29.3 9.4 97 34-152 7-108 (202)
289 TIGR03111 glyc2_xrt_Gpos1 puta 68.7 40 0.00087 34.2 10.2 102 32-155 53-159 (439)
290 cd04195 GT2_AmsE_like GT2_AmsE 67.2 70 0.0015 27.8 10.4 99 33-154 3-107 (201)
291 TIGR03469 HonB hopene-associat 66.5 86 0.0019 31.1 11.9 119 28-159 38-165 (384)
292 COG1664 CcmA Integral membrane 66.3 81 0.0018 26.7 9.8 70 333-423 46-116 (146)
293 cd02520 Glucosylceramide_synth 64.6 86 0.0019 27.4 10.4 103 33-152 6-111 (196)
294 PRK13412 fkp bifunctional fuco 64.2 12 0.00025 41.7 5.4 29 380-408 343-372 (974)
295 cd06420 GT2_Chondriotin_Pol_N 63.9 55 0.0012 27.9 9.0 100 33-152 2-104 (182)
296 cd02522 GT_2_like_a GT_2_like_ 63.9 64 0.0014 28.5 9.7 95 33-156 4-101 (221)
297 cd06438 EpsO_like EpsO protein 61.2 1.1E+02 0.0023 26.4 10.6 102 33-154 2-108 (183)
298 TIGR03472 HpnI hopanoid biosyn 60.3 63 0.0014 31.9 9.6 102 32-153 45-152 (373)
299 cd04196 GT_2_like_d Subfamily 59.6 98 0.0021 27.0 10.0 100 33-153 3-105 (214)
300 PF13641 Glyco_tranf_2_3: Glyc 58.9 11 0.00024 33.9 3.6 100 33-152 6-111 (228)
301 cd02526 GT2_RfbF_like RfbF is 58.0 1.4E+02 0.003 26.7 12.8 93 34-149 3-97 (237)
302 PRK10018 putative glycosyl tra 55.9 1.5E+02 0.0033 27.9 11.0 97 34-154 11-112 (279)
303 PRK10714 undecaprenyl phosphat 55.7 1.2E+02 0.0026 29.4 10.4 46 108-160 76-122 (325)
304 cd04185 GT_2_like_b Subfamily 53.9 1.2E+02 0.0025 26.5 9.4 100 34-153 3-105 (202)
305 cd02511 Beta4Glucosyltransfera 53.1 1.1E+02 0.0024 27.5 9.4 92 33-153 5-97 (229)
306 cd06421 CESA_CelA_like CESA_Ce 51.7 1.7E+02 0.0038 25.9 10.5 100 33-154 6-111 (234)
307 KOG2978 Dolichol-phosphate man 51.0 1.8E+02 0.0039 25.8 10.3 102 41-165 19-126 (238)
308 cd06913 beta3GnTL1_like Beta 1 50.9 1.2E+02 0.0027 26.8 9.2 104 33-156 2-113 (219)
309 PF04519 Bactofilin: Polymer-f 50.7 91 0.002 24.2 7.2 17 343-359 36-52 (101)
310 TIGR01556 rhamnosyltran L-rham 49.2 1.2E+02 0.0026 28.3 9.1 91 42-156 9-102 (281)
311 PRK11498 bcsA cellulose syntha 48.6 1.2E+02 0.0027 33.6 10.0 98 32-156 264-368 (852)
312 PTZ00260 dolichyl-phosphate be 48.3 1.1E+02 0.0024 29.7 9.0 49 108-162 148-200 (333)
313 cd06435 CESA_NdvC_like NdvC_li 45.6 1.5E+02 0.0032 26.6 8.9 98 33-153 3-110 (236)
314 COG1215 Glycosyltransferases, 43.6 1.3E+02 0.0028 30.1 8.9 106 32-157 58-167 (439)
315 PF04519 Bactofilin: Polymer-f 39.5 1.2E+02 0.0026 23.5 6.3 26 380-405 70-95 (101)
316 cd06436 GlcNAc-1-P_transferase 38.1 1.9E+02 0.0042 25.1 8.2 106 33-152 2-114 (191)
317 PRK13915 putative glucosyl-3-p 36.7 2.3E+02 0.005 27.1 9.0 49 108-162 101-152 (306)
318 PRK10063 putative glycosyl tra 36.6 3.4E+02 0.0074 24.9 11.0 97 35-155 8-109 (248)
319 cd06437 CESA_CaSu_A2 Cellulose 36.6 1.4E+02 0.0031 26.7 7.3 35 110-150 75-110 (232)
320 TIGR02990 ectoine_eutA ectoine 32.5 2.6E+02 0.0057 25.8 8.2 30 45-74 110-142 (239)
321 TIGR03030 CelA cellulose synth 31.0 3.2E+02 0.0069 29.8 9.8 41 109-155 215-256 (713)
322 cd03409 Chelatase_Class_II Cla 31.0 70 0.0015 24.5 3.7 22 41-62 45-66 (101)
323 COG1664 CcmA Integral membrane 29.3 2.4E+02 0.0051 23.9 6.7 27 380-406 91-117 (146)
324 PF05060 MGAT2: N-acetylglucos 26.4 79 0.0017 31.0 3.8 55 20-74 23-80 (356)
325 PF01983 CofC: Guanylyl transf 26.2 36 0.00078 31.0 1.3 106 9-152 1-113 (217)
326 COG1216 Predicted glycosyltran 24.1 3.8E+02 0.0082 25.4 8.2 99 41-161 16-118 (305)
327 PRK05782 bifunctional sirohydr 20.7 1E+02 0.0022 30.1 3.4 55 5-62 2-71 (335)
328 PF10111 Glyco_tranf_2_2: Glyc 20.7 7E+02 0.015 23.3 10.5 37 108-150 74-111 (281)
No 1
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.8e-61 Score=487.00 Aligned_cols=435 Identities=75% Similarity=1.239 Sum_probs=360.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|+|||||||.|+||+|||..+||||+||+|++|||+|+|++|.++|+++++|++++..+++.+|+...|.++.+.++
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999977999999999999999999999999999999999865544333333
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
....+.+.+..|.. .+..+++|++++++.++.++++......++|++++||++++.++.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 32335555544431 1123468999999998877753110013799999999999999999999999999999999988
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
.+..++..||.+..|++++|..+.|||..+....+++++++|..++......++++++|+|+|++++|..+++..++...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 77555789999999888999999999976655566777777765554333345789999999999999777776544444
Q ss_pred ccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCceecCCceeeeEE
Q 013483 246 DFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (442)
Q Consensus 246 ~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i 324 (442)
++..++++.++.+ .++++|.++|+|.|+++|++|++||+.++...+...++++.++++......+|+.+.++.+.+++|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 6778899999876 689999999999999999999999999998765556667777888877777889988888889999
Q ss_pred cCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeE
Q 013483 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 404 (442)
Q Consensus 325 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~ 404 (442)
+++|+|+++.|++|+||++|.|+++|.|.+++++|.+++........+...+..++.||++|.|.+++|+++|.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999997778999999999999999999999999765544433333333443346899999999999999999999999
Q ss_pred EccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 405 IANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
+.+..++.++.++|++++|++|.++||+++.|++||+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998789999999999986
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-61 Score=455.86 Aligned_cols=386 Identities=42% Similarity=0.729 Sum_probs=340.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++++-|+|||||+|+||.|||+.++||-+|++|+|.||+++|++|.++|+++|.|++.|+..++.+|+...+.|..+ .
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~--~ 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLD--R 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccc--c
Confidence 46788999999999999999999999999999999999999999999999999999999999999999887765322 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
..+.+.+++..+. +.++.|+.||++|+.+.+..+.. ...+.+++++||++++.|+.+++++|.+.++++|+++.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 1244778876665 34556899999999999988875 346899999999999999999999999999999999999
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~--- 242 (442)
++..++++||++..|++++|+.|.|||..... ...++++|+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99988999999999999999999999987211 12378999999999999999987543
Q ss_pred CCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCceee
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVD 321 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~~ 321 (442)
...+|+++++|.+++.+.+++|+++|||.||+|.++|++||+++++..+.+.+++++|++++..+..||+.+ +++.+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 257889999999999989999999999999999999999999999966678899999999999999999999 7778899
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.|++||+|.+ .|.+|+++.+++|+.+|+|.+|++|++ |.||++|.|.+|||++||.|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999997 999999999999999999999999998 9999999999999999999999
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
|+++++.. ++...-. .... .+.+||++++.++.+..
T Consensus 357 g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 357 GVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 99999864 2222222 4444 77788999998877643
No 3
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.3e-58 Score=464.88 Aligned_cols=428 Identities=60% Similarity=1.031 Sum_probs=354.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++++|||||||.||||+|||..+||+|+|++|+||||+|+|++|.++|+++++|++++..+++.+|+...+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 458999999999999999999999999999999988999999999999999999999999999999997543211 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
....+.+.+..|.. .+..+++||++||++++.++... ..++|+|++||++++.++.++++.|+++++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11123444433321 11122479999999999988631 13689999999999999999999999999999999877
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
.+..++..||.+..|+++++..|.|||.....+.+.++.++|...+.+.....+++++|+|+|++++|.+++++. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 665557789999998889999999999865556666777777666665555567899999999999997777653 2334
Q ss_pred ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh-cCCCCccccCCCCcccccCccCCCceecCCceeeeEE
Q 013483 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i 324 (442)
++.+++++.+++++++++|.++++|.|+|||++|++||+.++ ...+...++.+.++++..+.+.+|+.+.++.+.++.|
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~i 311 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESII 311 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEE
Confidence 566799999998899999999999999999999999999998 4445555677788888888999998888888889999
Q ss_pred cCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeE
Q 013483 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVI 404 (442)
Q Consensus 325 ~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~ 404 (442)
+++|.|.++.|.+|+||++|+|++++.|.+|+++|+.++-.+.+...+...+..++.||++|.|.+|+|+++|.||+++.
T Consensus 312 g~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 391 (429)
T PRK02862 312 AEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVR 391 (429)
T ss_pred CCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcE
Confidence 99999976788999999999999999999999999755444444444455555559999999999999999999999999
Q ss_pred EccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 405 IANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
+.+...+.+......++.|+.|.++|++++++++|+.|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 392 IVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred EecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 99988888877777899999998889999999999875
No 4
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.5e-55 Score=400.59 Aligned_cols=360 Identities=43% Similarity=0.664 Sum_probs=295.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+.|+||||.||.||||+|||.++|||++|++|+ |||+|++++|.++|+++|++.++|+++++..++.+.| +.+++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhccc
Confidence 789999999999999999999999999999999 9999999999999999999999999998999988776 23444
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
|+++...|.+ ..|..|++++.+..++..+ +.+|+|+++|++++.++++++++|+++++++|+++.++
T Consensus 83 ---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 7888766664 2234455555555544433 24899999999999999999999999999999999999
Q ss_pred CCCcCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 167 DDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
+. ++.||++..|+ +|+|.+|.|||.... ++-.++|+|+|++++|.+++ +++.
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~pt-- 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPT-- 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hccc--
Confidence 87 89999999998 899999999998443 24457999999999998776 3343
Q ss_pred ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCceecCCceee--eE
Q 013483 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVD--SI 323 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~--~~ 323 (442)
+++.+++|.+++++++++|.++|||.||++|+||+.+-..+++..+. ++..+..+|+.+.++++.+ +.
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~----------~t~~r~~p~~~i~~nvlvd~~~~ 272 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK----------YTSPRLLPGSKIVGNVLVDSIAS 272 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc----------cCCccccCCccccccEeeccccc
Confidence 48889999999999999999999999999999999998887765532 4455667777776766665 45
Q ss_pred EcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCe
Q 013483 324 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403 (442)
Q Consensus 324 i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~ 403 (442)
+|++|.|++ +++||.+|+|+.|+.|.+|+++|+..|.+.+..+.+.-+.. +.||.+ ++|..+|+||.+|
T Consensus 273 iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~-----~~id~~a~lG~nV 341 (371)
T KOG1322|consen 273 IGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIW-----ARIDKNAVLGKNV 341 (371)
T ss_pred cCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCc-----eEEecccEeccce
Confidence 677777775 79999999999999999999999988888887777666665 345444 4777788888888
Q ss_pred EEccCCCcccceeeCCCeEEccCcEEEcCCcEE
Q 013483 404 IIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 436 (442)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v 436 (442)
++.|..++.+. ++..+.++.++|.+.++|
T Consensus 342 ~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 342 IVADEDYVNEG----SGLPIKSGITVVLKPAII 370 (371)
T ss_pred EEecccccccc----eeEEeccceeeccccccc
Confidence 88876666554 567777887777666655
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.7e-53 Score=422.26 Aligned_cols=372 Identities=40% Similarity=0.648 Sum_probs=303.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|+|||||||+||||+|||..+||||+||+|++|||+|+|++|.++|+++++|+++++.+++.+|+.+...|+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5789999999999999999999999999999999779999999999999999999999999999999864322221110
Q ss_pred CCceEEEec--ccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLA--ATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~--~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
...+.+++ ..+. .++|++||++||+.+++++... ..++|+|++||++++.++.++++.|+++++++|+++
T Consensus 80 -~~~~~i~~~~~~~~----~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~ 151 (380)
T PRK05293 80 -NGGVTILPPYSESE----GGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAV 151 (380)
T ss_pred -CCCEEEeCCcccCC----CCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEE
Confidence 01134442 2221 1234589999999999998631 126899999999999999999999998888889888
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP- 242 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~- 242 (442)
...+..++..||.+..|++++|.++.|||..+. +++.++|+|+|++++|..++++...
T Consensus 152 ~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~ 210 (380)
T PRK05293 152 IEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKN 210 (380)
T ss_pred EEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhc
Confidence 766544578899999988899999999986432 3578999999999988777665322
Q ss_pred --CCcccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCc
Q 013483 243 --TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSK 318 (442)
Q Consensus 243 --~~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 318 (442)
...++..++++.++++ .++++|.++++|.|++++++|++||+.++...+...++++.+.+...+.+.+|+.+ +++.
T Consensus 211 ~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 290 (380)
T PRK05293 211 PNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAK 290 (380)
T ss_pred CCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCE
Confidence 1234557899998874 68999999999999999999999999999877666777788888888888899999 7888
Q ss_pred eeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 319 IVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 319 i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
|.++.|+++|.|+ +.+.+|+||++|.|+++|.|.+++++.+ +.||++|.|.+|+|+++|+
T Consensus 291 i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~ 350 (380)
T PRK05293 291 VKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAV 350 (380)
T ss_pred EecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCE
Confidence 8899999999997 4678999999999999999999998877 9999999999999999999
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
|++++.+.+... +..+||++++|+++++|
T Consensus 351 i~~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 351 IGDGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred ECCCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 999999976321 02345666666666554
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.9e-53 Score=420.79 Aligned_cols=385 Identities=36% Similarity=0.660 Sum_probs=303.0
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|++++..+++.+|+...|.+. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 5788999999999999999999999999999999878999999999999999999999999999999997543211 11
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEe
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
....+...+..+. .+..+++||++||+.+++++.+. ..++|+|++||++++.++.+++++|+++++++|+++.
T Consensus 80 -~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 1111221111111 12234689999999999998631 1246999999999999999999999999999999887
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC--
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 242 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~-- 242 (442)
..+..++..||.+..|++++|..|.|||..+.... ....++++++|+|+|++++|.+++++...
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 66544578899999998899999999987532100 00124688999999999998666664221
Q ss_pred -CCcccccchhhhcccccceEEEEe------------cceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccC
Q 013483 243 -TANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNL 309 (442)
Q Consensus 243 -~~~~~~~~~l~~~i~~~~i~~~~~------------~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (442)
...++..|+++.++++..+++|.+ +|+|.|+++|++|++||+.+++......++.+++++.+.....
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 224556789999999888999976 5999999999999999999998765555666667777766666
Q ss_pred CCcee-cCC----ceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCC
Q 013483 310 PPSKI-DDS----KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (442)
Q Consensus 310 ~~~~i-~~~----~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (442)
+|+.+ .++ .+.++.|+++|.|+++.|.+|+||++|.|+++|.|++++++.+ +.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~ 359 (407)
T PRK00844 299 PPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGR 359 (407)
T ss_pred CCceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECC
Confidence 77766 332 4568999999999877888999999999999999999988776 99999
Q ss_pred CcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEE-ccCcEEEcCCcEE
Q 013483 385 NTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVI 436 (442)
Q Consensus 385 ~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i-~~~~~vi~~~~~v 436 (442)
+|.|.+|+|+++|+|++++++++.. +.. +.+.+| ..|.++|++|+.|
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCEEEeeEECCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCCC
Confidence 9999999999999999999998731 111 234555 4666778877754
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.4e-52 Score=415.08 Aligned_cols=388 Identities=35% Similarity=0.652 Sum_probs=305.7
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
+.+++++|||||||.||||+|||..+||||+|++|++|||+|+|++|.++|+++|+|++++..+++.+|+.+.|.+. ..
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~-~~ 89 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF-RE 89 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc-cc
Confidence 45688999999999999999999999999999999934999999999999999999999999999999997543210 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+. ...+.+++..+.. ..+.+++||++|+++++.++... .+++|+|++||++++.++.++++.|+++++++|+++
T Consensus 90 ~~-~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 90 EL-GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVAC 163 (425)
T ss_pred CC-CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEE
Confidence 11 1224444433321 11234689999999999998631 136899999999999999999999999999999998
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP- 242 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~- 242 (442)
.+.+..++..||.+..|++++|++|.|||..+.. + + ....++++++|+|+|++++|.+++++...
T Consensus 164 ~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~----------~--~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~ 229 (425)
T PRK00725 164 LEVPREEASAFGVMAVDENDRITAFVEKPANPPA--M----------P--GDPDKSLASMGIYVFNADYLYELLEEDAED 229 (425)
T ss_pred EecchhhcccceEEEECCCCCEEEEEECCCCccc--c----------c--cCccceEEEeeEEEEeHHHHHHHHHHhhcC
Confidence 7765555789999999888999999999864321 0 0 00124688999999999988666654321
Q ss_pred --CCcccccchhhhcccccceEEEEec-----------ceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccC
Q 013483 243 --TANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNL 309 (442)
Q Consensus 243 --~~~~~~~~~l~~~i~~~~i~~~~~~-----------g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (442)
...++..|+++.++++.++++|.++ ++|.|+++|++|++||+.++...+...+++...++++.....
T Consensus 230 ~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~ 309 (425)
T PRK00725 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQL 309 (425)
T ss_pred CCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCC
Confidence 2345667999999998899999885 599999999999999999987665555666666777666677
Q ss_pred CCcee-c---C--CceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 310 PPSKI-D---D--SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 310 ~~~~i-~---~--~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
+|+.+ . + +.+.+++|+++|+|.++.|++|+||++|.|+++|.|.+|+++++ +.||
T Consensus 310 ~~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~ 370 (425)
T PRK00725 310 PPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVG 370 (425)
T ss_pred CCCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEEC
Confidence 77765 1 2 34668999999999877888999999999999999999999887 9999
Q ss_pred CCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEE-ccCcEEEcCCcEE
Q 013483 384 ENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVI 436 (442)
Q Consensus 384 ~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i-~~~~~vi~~~~~v 436 (442)
++|.|.+|+|+++|+|+++++++......+ ++.+| ..|.++|++++.+
T Consensus 371 ~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~ 419 (425)
T PRK00725 371 RSCRLRRCVIDRGCVIPEGMVIGEDPEEDA-----KRFRRSEEGIVLVTREMLD 419 (425)
T ss_pred CCCEEeeEEECCCCEECCCCEECCCCCCCC-----ceeEecCccEEEECCCccc
Confidence 999999999999999999999975433222 12333 5566777777654
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-51 Score=399.74 Aligned_cols=351 Identities=30% Similarity=0.476 Sum_probs=277.2
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|.++|+++++++++|..+.+.+++.+.+.++
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~------- 72 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLG------- 72 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccC-------
Confidence 48999999999999999999999999999999 9999999999999999999999999999999997643222
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..+.. ++||+++|+.+.+++.. ++|++++||.+++.++.+++++|+++.+..|+...+..
T Consensus 73 --~~I~y~~e~~-------~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 73 --VRITYVVEKE-------PLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred --CceEEEecCC-------cCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 2222222322 47999999999999973 79999999999999999999999999888888888877
Q ss_pred CCcCCcccEEEEcCC-CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcc
Q 013483 168 DSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (442)
. +..||.+..+++ +++.+|.|||..... .+++.++|+|+|++++|. .++. ....+
T Consensus 138 ~--~~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 D--PSEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred C--CCcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 6 378999988744 599999999953111 247899999999999996 3332 23456
Q ss_pred cccchhhhcccccc-eEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCc-cCCCceecCCceeeeEE
Q 013483 247 FGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRR-NLPPSKIDDSKIVDSII 324 (442)
Q Consensus 247 ~~~~~l~~~i~~~~-i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~i~~~~i 324 (442)
|..++++.+++... +++|.++|+|.|+++|++|++|++.+++..... +.......+. +.. +.+.+ +.+|
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~-~~i~g----p~~i 264 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKS----PLGPIEEPVVIIRS-AYIIG----PVVI 264 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccc----cccccccccccccc-ceEeC----CEEE
Confidence 66689999999876 999999999999999999999999998644221 0001100000 111 22222 5666
Q ss_pred cCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCC
Q 013483 325 SHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402 (442)
Q Consensus 325 ~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~ 402 (442)
+.+|.|+ .+.| .+++||++|.|+.++.|.+|+++.+ +.|+++++|.+|+||+||.||++
T Consensus 265 g~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~ 325 (358)
T COG1208 265 GPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGAS 325 (358)
T ss_pred CCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCc
Confidence 6666666 4555 4799999999999999999999998 99999999999999999999992
Q ss_pred eEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 403 VIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
. . +.+ ..+++++.+..| +++++++.++.+++
T Consensus 326 ~-~-----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~ 356 (358)
T COG1208 326 L-I-----IGD-VVIGINSEILPG-VVVGPGSVVESGEI 356 (358)
T ss_pred e-e-----ecc-eEecCceEEcCc-eEeCCCccccCccc
Confidence 2 2 555 666666677666 44577777777764
No 9
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.3e-50 Score=377.04 Aligned_cols=382 Identities=23% Similarity=0.286 Sum_probs=297.9
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.+||||||+||||+ .++||-|.|++|+ ||++|+++.+...+.+++++|+++..+++++.+.+.. .
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~---- 68 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----D---- 68 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----C----
Confidence 36789999999999999 8899999999999 9999999999999999999999999999998885421 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
++++ .|.+ ++||++|+++++.++.+ ..+.++||++||+ |+..+ |+++++.|...++.+++++.
T Consensus 69 ---v~~v--~Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 69 ---VEFV--LQEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred ---ceEE--Eecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 2222 2332 47999999999999943 1245799999999 66554 88899999999999999999
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
..++ |..||-+..+++|.|.++.|..+....++ .-..+++|+|+|+.+.|.++|.+.. ..
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~eek-----------------~I~eiNtGiy~f~~~~L~~~L~~l~-nn 193 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEEEK-----------------QIKEINTGIYAFDGAALLRALPKLS-NN 193 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHHHh-----------------cCcEEeeeEEEEcHHHHHHHHHHhc-cc
Confidence 9877 88999999998999999999777654311 1246799999999998888888753 34
Q ss_pred cccccchhhhccc-----ccceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCCC-------Ccccc
Q 013483 245 NDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDAT-------KPIYT 304 (442)
Q Consensus 245 ~~~~~~~l~~~i~-----~~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~~-------~~~~~ 304 (442)
+..++.+|.+++. +.++.++..+++ ...+|+-.+|.++.+.|..+. .+.++.+|+ ..+..
T Consensus 194 NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~ 273 (460)
T COG1207 194 NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGR 273 (460)
T ss_pred cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECC
Confidence 5555666666664 468888888754 578899999999988776542 233344443 44444
Q ss_pred cCccCC------------Ccee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEec------eEEECCcccc
Q 013483 305 SRRNLP------------PSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD------TMMLGADFYE 364 (442)
Q Consensus 305 ~~~~~~------------~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~------~~~~~~~~~~ 364 (442)
++.|+| .+.| +++.|.|+.|++++.|. .+.+++|.||++|.|||+++|++ .+.+|++ ++
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNF-VE 352 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNF-VE 352 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeee-EE
Confidence 555555 4444 45667778888888888 46777777777777777666655 5555643 32
Q ss_pred chhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccce-eeCCCeEEccCcEE-----EcCCcEEcC
Q 013483 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVTV-----ILKNSVITD 438 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~~v-----i~~~~~v~~ 438 (442)
..++..+++ +.++|-++|+|+.||.+|.||+|+++.|+++..++. +||+++|||+++.+ ||+++.|++
T Consensus 353 ---vK~a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaA 426 (460)
T COG1207 353 ---VKKATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAA 426 (460)
T ss_pred ---EecccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcc
Confidence 123344445 688899999999999999999999999999999988 69999999999886 999999999
Q ss_pred CccC
Q 013483 439 GFVI 442 (442)
Q Consensus 439 ~~~i 442 (442)
||+|
T Consensus 427 GStI 430 (460)
T COG1207 427 GSTI 430 (460)
T ss_pred cceE
Confidence 9986
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.2e-48 Score=385.39 Aligned_cols=351 Identities=25% Similarity=0.440 Sum_probs=271.8
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCccc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~ 85 (442)
.+|+|||||+|+|+||+|||.++||||+||+|++|||+|+|++|.++|+++|+|++++..+ ++.+|+.+...|+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3799999999999999999999999999999987899999999999999999999999887 999999653222211110
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
. ...... .+.+.. ...|++++++.+++++.. ...++|+|++||++++.++.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~~~----l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDRDD----LSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCCCC----cccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 0 011111 122111 113677788888888842 013689999999999999999999999999999999988
Q ss_pred cCCCcCCccc-EEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 013483 166 MDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (442)
Q Consensus 166 ~~~~~~~~~g-~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~- 243 (442)
.+..++..|| .+..++++++..+.+++.... ....++|+|+|++++|.++++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 7643456775 455666678877643332211 13468999999999876676654332
Q ss_pred CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCcccc-CCCCcccccCccCCCcee-cCCceee
Q 013483 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DDSKIVD 321 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i-~~~~i~~ 321 (442)
...+..++++.++++..+++|..+++|.|++||++|++||+.+++.......+ .....++....+.+|+.+ +++.|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 22334578888888888999999999999999999999999998775332222 222344444456688888 7888889
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.||++|.|+ +.+.+|+|+++|.|+++|.|.+++++.+ +.|++++.+.+|+||++++|++
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999998 5688999999999999999999999887 8999999999999999999999
Q ss_pred CeEEccC
Q 013483 402 NVIIANS 408 (442)
Q Consensus 402 ~~~~~~~ 408 (442)
++.+.+.
T Consensus 350 ~~~~~~~ 356 (369)
T TIGR02092 350 NVKIAGT 356 (369)
T ss_pred CCEeCCC
Confidence 9999764
No 11
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=6.5e-48 Score=381.16 Aligned_cols=356 Identities=49% Similarity=0.858 Sum_probs=276.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.||||+|+|.++||||+|++|++|||+|++++|.++|+++|+|++++..+++.+++.+.+.+. .. . ...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~-~-~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFD-GF-I-DGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCcc-Cc-c-CCCE
Confidence 6999999999999999999999999999866999999999999999999999999999999997543211 00 0 1124
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
++.+..+. ...+.+++|++++++.++.++... ..++|++++||++++.++.++++.|+++++++++++.+.+...
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 44332221 112234579999999999888531 1368999999999999999999999988888888887766555
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---CCccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~---~~~~~ 247 (442)
+..||++..|+++++..+.|||..+..... . ...+++++|+|+|++++|.++++.... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~------------~--~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIPG------------M--PDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCcccccc------------c--ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 778999999888899999999854331000 0 012478999999999998666665321 12345
Q ss_pred ccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCccccCCCCccccc-CccCCCcee-cCCceeeeEEc
Q 013483 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIIS 325 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i-~~~~i~~~~i~ 325 (442)
..++++.+++++++++|.++++|.|++|+++|++|++.++++.+.......++.+.+. ..+.+++++ +++.+.++.||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 5789999999889999999999999999999999999999876433333334444332 345566666 44566788999
Q ss_pred CCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEE
Q 013483 326 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVII 405 (442)
Q Consensus 326 ~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~ 405 (442)
++|+|+.+.+.+|+||++|.|+++|.|.+++++++ +.||++|.|.+|+||++++|++++++
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEe
Confidence 99999855788999999999999999998888776 89999999999999999999999988
Q ss_pred cc
Q 013483 406 AN 407 (442)
Q Consensus 406 ~~ 407 (442)
+|
T Consensus 360 ~~ 361 (361)
T TIGR02091 360 GN 361 (361)
T ss_pred CC
Confidence 65
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=8.1e-45 Score=357.78 Aligned_cols=234 Identities=23% Similarity=0.376 Sum_probs=190.5
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEecc-ChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|++++++++++ ..+++.+++.+.. .|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~------~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGE------RFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhccc------ccCce
Confidence 589999999999999999999999999999 999999999999999999999999 7788888885422 22211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+..+ .+. ++.|++++++.++.++.+ ++|++++||++++.++.++++.|+++++++|+++.+.++
T Consensus 74 -~~~~--~~~-------~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYI--VQG-------EPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEE--ECC-------CCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 2222 222 136999999999998863 689999999999999999999999999999998887654
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--Ccc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (442)
+..|+.+..+++++|.++.|||..+. +.+.++|+|+|++.++. .+++..+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 56799888876678999999987542 35689999999997764 55543332 122
Q ss_pred cccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 247 ~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
...++++.+++. .++++|.++++|.|++||++|++||+.++++.
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~ 238 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEV 238 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhc
Confidence 236788888865 57999999999999999999999999998753
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.7e-44 Score=365.91 Aligned_cols=389 Identities=21% Similarity=0.281 Sum_probs=278.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++++|||||||.|+||+ ..+||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+++.+.. .
T Consensus 1 m~~~~avIlAaG~g~Rl~---~~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~----~--- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMK---SDLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG----D--- 69 (459)
T ss_pred CCcceEEEEcCCCCcccC---CCCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC----c---
Confidence 457999999999999998 3689999999999 9999999999999999999999998888888874311 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-e-eecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.+.. +.. ++|++++++.+++++++. .++|++++||. + ...++.++++.|+..+++++++.
T Consensus 70 ----i~~~~--~~~-------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 70 ----VSFAL--QEE-------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ----eEEEe--cCC-------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 22221 211 369999999999998631 36899999998 3 35668999999988888888887
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ +..|+.+..|+++++..+.|||...... ..++++++|+|+|++++|.++++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 76654 5678988888888999999887432110 0135789999999999776666654332
Q ss_pred ---Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCCCC-cccccCccCC
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLP 310 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~~~-~~~~~~~~~~ 310 (442)
......|+++.++++ .++++|+++++ |.++++|++|++|++.++... .....+++.. .+.+.+.+++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~ 273 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGR 273 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcC
Confidence 223346888988876 57999999887 899999999999988665432 1222444543 3555566666
Q ss_pred Ccee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh---hhhhcCCC-------
Q 013483 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV---ASLLAEGR------- 377 (442)
Q Consensus 311 ~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~------- 377 (442)
++.+ +++.|. +++||++|.|+ ++.|.+|+||++|.|++++.|.++++ ++++.+.+... .+...++.
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ 352 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVV-GDDVAIGPMAHLRPGTELSAHVKIGNFVE 352 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEE-CCCCEECCCCEECCCCEeCCCCEECCCcc
Confidence 6666 455553 57777777777 66667777777777777777655433 33332221100 00011110
Q ss_pred -cceEeC------CCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 378 -VPVGIG------ENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 378 -~~~~i~------~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+.|| +.+++++++||++|.||+++++.+..+...+ ..||++++||.++++ ||++++|++||+|
T Consensus 353 ~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 353 TKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred ccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 001222 2334467899999999999999887766654 579999999999876 9999999999875
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-44 Score=368.84 Aligned_cols=389 Identities=17% Similarity=0.216 Sum_probs=278.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+.++.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.+++++++++++++..+++.+++.... ..
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~~--- 71 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---PE--- 71 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---Cc---
Confidence 4578999999999999996 589999999999 9999999999999999999999988877777764311 11
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++. +. ++.|++++++.++.++.. ...++|++++||+ ++ ..++.++++.|++.+++++++.
T Consensus 72 ----~~~~~--~~-------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 72 ----VDIAV--QD-------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred ----cEEEe--CC-------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 22221 21 136899999999988852 1136799999999 44 3558999999988888778777
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ +..|+.+..+++++|.++.|||.....+. ...++++|+|+|++++|.++++.....
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~~-----------------~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQR-----------------AIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHHh-----------------hcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 66554 67899888888899999999988543210 124679999999999987776654332
Q ss_pred ---Ccccccchhhhcccc-cceEEEEecceeeecCChHHH------HHHhhhhhcCC--CCccccC-------CCCccc-
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSF------FEANLALTAHP--PMFSFYD-------ATKPIY- 303 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~------~~an~~~l~~~--~~~~~~~-------~~~~~~- 303 (442)
...+..|+++.+++. .++++|.++++|.|+++++.| ..+|+.++... .+...++ +.+.+.
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 223346889988876 589999999999999999888 56666554332 1111122 222222
Q ss_pred -----------ccCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--h
Q 013483 304 -----------TSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--V 369 (442)
Q Consensus 304 -----------~~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--~ 369 (442)
+.+.|++++.| .++.|.+++|+++|.|..+.+.+++||+++.|++++.|.+++++|++..+.... .
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~ 356 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETK 356 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEc
Confidence 22333333333 244444566666666654445667777777777777776666666554333221 1
Q ss_pred hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+..+++ +.|++.+.+++|+||++|.||+++++.+..+..++ .+||++++||.++++ ||++++||+||+|
T Consensus 357 ~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 357 NATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred ccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 1222333 56777778889999999999999999887665554 589999999999886 9999999999875
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.9e-44 Score=365.13 Aligned_cols=389 Identities=23% Similarity=0.302 Sum_probs=264.7
Q ss_pred CCcccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC
Q 013483 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (442)
Q Consensus 1 ~~~~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~ 80 (442)
|+.+. ++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++..
T Consensus 1 ~~~~~-~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----- 70 (481)
T PRK14358 1 MTEQT-RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG----- 70 (481)
T ss_pred CCccc-CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-----
Confidence 44444 589999999999999996 589999999999 99999999999999999999999988888777642
Q ss_pred CCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCc
Q 013483 81 SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGAD 158 (442)
Q Consensus 81 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~ 158 (442)
.+ +.++. +. ++.|++++++.+++++.. ..++|++++||+ ++ ..++.++++.|++++++
T Consensus 71 ~~-------i~~v~--~~-------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 71 SG-------VAFAR--QE-------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred CC-------cEEec--CC-------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 11 23332 21 136999999999988852 135799999998 33 45689999999998888
Q ss_pred EEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 159 ~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+|+++.+.++ +..||.+..|++++|.+|.|||.....+ ....++++|+|+|+++++ ++++
T Consensus 131 ~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~ 190 (481)
T PRK14358 131 MTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELAR 190 (481)
T ss_pred EEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHH
Confidence 9988877765 5679999998889999999998753210 012467999999997653 3333
Q ss_pred hhCC---CCcccccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhh-hhcCC--------------CCccccCCC
Q 013483 239 WRFP---TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP--------------PMFSFYDAT 299 (442)
Q Consensus 239 ~~~~---~~~~~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~-~l~~~--------------~~~~~~~~~ 299 (442)
...+ ....+..|+++.++++ .++++|.+.++|..++.-.+|..+++. ++... +....+.+.
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 3221 1223346888888876 579999998888777766666554432 22110 111111111
Q ss_pred ------------CcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccc
Q 013483 300 ------------KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365 (442)
Q Consensus 300 ------------~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~ 365 (442)
..+.+.+.+++.+.| .++.|.+++|+++|.|+ ++.+.+++||+++.|++++.|...+++|+++.+.
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig 350 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIG 350 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEEC
Confidence 222222222333333 23444455555555555 4444555555555555555555545555543333
Q ss_pred hhhh--hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccce-eeCCCeEEccCcEE-----EcCCcEEc
Q 013483 366 DAEV--ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVTV-----ILKNSVIT 437 (442)
Q Consensus 366 ~~~~--~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~-~~~~~~~i~~~~~v-----i~~~~~v~ 437 (442)
+... .++...+ +.+|+.+.+++++||++|.||+++++.|..+..++. .||++++||+++++ ||++++|+
T Consensus 351 ~~~~i~~~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~ 427 (481)
T PRK14358 351 NFVETKNARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA 427 (481)
T ss_pred CCEEECCceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence 3211 1111112 455666666889999999999999999987776654 89999999999876 99999999
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
+||+|
T Consensus 428 ~gs~v 432 (481)
T PRK14358 428 AGSAV 432 (481)
T ss_pred CCCEE
Confidence 99864
No 16
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.5e-43 Score=354.21 Aligned_cols=375 Identities=22% Similarity=0.309 Sum_probs=283.0
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|+++|||||||.||||+| .+||+|+|++|+ |||+|+++.|.++ +++++|++++..+++.+++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 468899999999999996 799999999999 9999999999987 78999999999889988886421 11
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.++..... .+.|++++++.+.. . .++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~--~------~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP--K------HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc--C------CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 333332211 13689999977421 1 37999999999432 1244555555677788887776
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--- 243 (442)
++ +..|+.+..+ ++++..+.|++..... .. ..++.++|+|+|++++|.++++.....
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~~--~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------EL--KIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------cc--cceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 54 5578887764 6899999988754221 00 135679999999999997665543211
Q ss_pred Ccccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhhhcCCC-------------CccccCCCCcccccCcc
Q 013483 244 ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRN 308 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~~~-------------~~~~~~~~~~~~~~~~~ 308 (442)
...+..|+++.+++. .++.++..+ ++|.|+++|+||.+|+..+..+.. ...+..++..+.+.+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 223346778877764 679999887 689999999999999876654321 11224455566666777
Q ss_pred CCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcE
Q 013483 309 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTK 387 (442)
Q Consensus 309 ~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 387 (442)
++++.| .++.+.++.|+++|.|+.+.+.+|+||+++.|++++.|++ +++|++.+++.+. . ++ +.||+.++
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~-~~ig~~~~i~~~~----~-~~---~~i~~~~~ 339 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKN-THIGNFVETKNAK----L-NG---VKAGHLSY 339 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEec-cEEcCcEEEcccE----e-cc---cccccccc
Confidence 888888 6777788999999999887889999999999999999974 4667664443322 1 34 79999999
Q ss_pred eeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 388 IKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 388 i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
|++|+||++|.||+++++.+..+..++ .+||++++||+++.| ||++++||+||+|
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 999999999999999999998777665 489999999999887 9999999999875
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=7e-43 Score=355.70 Aligned_cols=380 Identities=21% Similarity=0.263 Sum_probs=268.0
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+ + +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~----~------ 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-R----D------ 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-C----C------
Confidence 7899999999999996 689999999999 99999999999999999999999988888777643 1 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.+.. +.. +.|+++++++++.+++. .++|++++||+ ++ ..++.++++.|.+. ..++++.+.
T Consensus 66 -i~~~~--~~~-------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVL--QAE-------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEE--cCC-------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22221 111 25899999999998863 36899999998 44 44588889888664 356666665
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--- 243 (442)
++ +..|+.+..|+++++..+.|||....... ..+.+++|+|+|++++|.++++.....
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~~-----------------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQK-----------------AIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHHh-----------------cCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 56689888888889999999876432100 124678999999999876666654322
Q ss_pred Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCCC------C-------c------------cc
Q 013483 244 ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHPP------M-------F------------SF 295 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~~------~-------~------------~~ 295 (442)
...+..++++.++++ .++++|+++++ |+++++|++|.+++..+..+.. . . ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 122335788888875 57999999887 9999999999888765543110 0 0 11
Q ss_pred cCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh-h-hh
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE-V-AS 371 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~-~~ 371 (442)
+++.+.+.+.+.+++.+.| +++.+.++.|+++|.|+ ++.+.+++||++|.|++++.|.+.++++++..+.... . .+
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~ 349 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA 349 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence 2222233333334444444 34555567777777777 5666667777777777766666554555443222210 0 12
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+++ +.|++.+.+++|+||++|.||+++++.+..+..++ .+||+++|||.++.+ ||++++||+||+|
T Consensus 350 ~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 350 RIGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred EECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 22222 45555566677999999999999999887766664 589999999999876 9999999999875
No 18
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.7e-43 Score=355.56 Aligned_cols=382 Identities=20% Similarity=0.257 Sum_probs=266.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|++|++||||||.|+||+ ..+||+|+|++|+ |||+|++++|.+++++++++++++..+.+.+++... +
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 457999999999999998 4689999999999 999999999999999999999998877777776321 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++. +.+ +.|++++++.++.++.. .++|++++||. +...++.++++.|++.+ +++++
T Consensus 71 ----~~~i~--~~~-------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVL--QAE-------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEE--CCC-------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22221 111 36999999999988753 36899999998 34566888888876544 45555
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ +..||.+.. ++++|.+|.|||...... ..++++++|+|+|++++|.++++...+.
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 55544 567998754 578999999998643210 0135789999999999887777654332
Q ss_pred ---Ccccccchhhhcccc-cceEEEE------ecce--eeecCChHHHHHHhhh--hhcC-----CCCc-----------
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANLA--LTAH-----PPMF----------- 293 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~------~~g~--~~di~t~~~~~~an~~--~l~~-----~~~~----------- 293 (442)
...+..|+++.++++ .++.+|. +.|+ |.|++++++|+++|+. ++.. .+..
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 223457899999986 6888886 3565 7889999999999852 2211 1100
Q ss_pred -cccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh-h
Q 013483 294 -SFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE-V 369 (442)
Q Consensus 294 -~~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~ 369 (442)
..+++...+.+.+.+++++.| .++.|.++.|+++|.|+ .+.+.+++||+++.|++++.|...+.++++..+.+.. +
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 122233444444455555555 45566667777777777 5566666666666666666555444444332222110 0
Q ss_pred -hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 -ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 -~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+...++ +.+++.+.+++|+||++|.||+++++.+..+..+. .+||++++||.++++ ||++++||+||+|
T Consensus 351 ~~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 351 KKARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred eceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 1222223 45666666788999999999999999887665553 689999999999886 8999999999875
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1e-41 Score=347.32 Aligned_cols=385 Identities=18% Similarity=0.230 Sum_probs=259.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+.+.|||||||+||||+ ..+||+|+|++|+ |||+|++++|.+.+++++++++++..+.+.+++... .
T Consensus 4 ~~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~---- 70 (456)
T PRK14356 4 STTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE-----D---- 70 (456)
T ss_pred cceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----C----
Confidence 46889999999999997 5789999999999 999999999999999999999998877776665321 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
++++.... +.|++++++.++++++.. ..++|++++||+ ++. ..+.++++.|+ ++++++...
T Consensus 71 ---~~~v~~~~---------~~Gt~~al~~a~~~l~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~ 133 (456)
T PRK14356 71 ---ARFVLQEQ---------QLGTGHALQCAWPSLTAA---GLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTL 133 (456)
T ss_pred ---ceEEEcCC---------CCCcHHHHHHHHHHHhhc---CCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEE
Confidence 22322111 368999999999888631 137899999999 444 45788888775 566788777
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC--
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 242 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~-- 242 (442)
+.++ +..||.+.. ++|+|..+.||++..... ....+.++++|+|+|++++|..+++....
T Consensus 134 ~~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~ 195 (456)
T PRK14356 134 TLPD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNAN 195 (456)
T ss_pred EcCC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcc
Confidence 7665 568998876 578999999988643110 00013567999999999988766654322
Q ss_pred -CCcccccchhhhccc-ccceEEEEecc--eeeecCChHHHHHHhhhhhcCCC-------------CccccCCCCccccc
Q 013483 243 -TANDFGSEIIPASAN-EQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTS 305 (442)
Q Consensus 243 -~~~~~~~~~l~~~i~-~~~i~~~~~~g--~~~di~t~~~~~~an~~~l~~~~-------------~~~~~~~~~~~~~~ 305 (442)
.......++++.+++ +.++.++.+.+ .|++++||+||.+|+..+..+.. ....+++...+.++
T Consensus 196 ~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~ 275 (456)
T PRK14356 196 KSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPG 275 (456)
T ss_pred cCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCC
Confidence 122334577877765 45789988865 57999999999999877765421 00111222222222
Q ss_pred ------------CccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchh-hh-
Q 013483 306 ------------RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDA-EV- 369 (442)
Q Consensus 306 ------------~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~-~~- 369 (442)
+.+++++.| .++.|.+++|+++|.|+ .+.+.+++||++|.|++++.|.+++++|++..+... +.
T Consensus 276 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~ 355 (456)
T PRK14356 276 AEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK 355 (456)
T ss_pred CEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceee
Confidence 223333333 34444556666666666 455556666666666665555544444433111110 00
Q ss_pred hhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 370 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.+...++ +.+++++++++|+||+++.||+++++.+..+...+ .+||+++++|.++++ ||++++|++||+|
T Consensus 356 ~~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 356 KAVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred eeEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 0112222 45556666677888888888888888776554443 589999999999886 8999999999875
No 20
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-42 Score=320.61 Aligned_cols=348 Identities=21% Similarity=0.332 Sum_probs=254.3
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccC-hhhHHHHHHhhccCCCCc
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~ 83 (442)
.|.+++||++|||.||||..++...|||||||+|+ |||+|+|+||.++|+++++|++... ...+...+...+.. .+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l--~~ 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDL--KK 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcc--cc
Confidence 47889999999999999999999999999999999 9999999999999999999999763 34666666554321 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
+. ..+++....+. ..||+++|+.....+.. +|||+++||.+++.++..++++|+..++.+.|++
T Consensus 83 ~~--~~v~ip~~~~~--------d~gtadsLr~Iy~kikS------~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462|consen 83 RP--DYVEIPTDDNS--------DFGTADSLRYIYSKIKS------EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred cc--cEEEeeccccc--------ccCCHHHHhhhhhhhcc------CCEEEEecccccCCCcHHHHHHHhccChhHhHHh
Confidence 10 12444333322 26999999999988873 7999999999999999999999998877655554
Q ss_pred eecCC---------CcCCcccEEEEcCCC-ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 164 LPMDD---------SRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 164 ~~~~~---------~~~~~~g~v~~d~~~-~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
.+... +....+.++..++++ |+. |... +....+.+.+.+++|+-+|.... .+.|.++++|+|+.+++
T Consensus 147 ~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~-y~~~-~~d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~ 223 (433)
T KOG1462|consen 147 GNALSEVPIPGQKGKKKQARDVIGINEDTERLA-YSSD-SADEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVI 223 (433)
T ss_pred ccccccccccCcccccccccceeeeccccceeE-Eeec-CCcCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHH
Confidence 42211 111223344444443 433 3322 22233567788999999999876 55789999999999999
Q ss_pred HHHHhhhCCCCcccccchhhhccccc---------------------------------ceEEEEec--ceeeecCChHH
Q 013483 234 LNLLRWRFPTANDFGSEIIPASANEQ---------------------------------FLKAYLFN--DYWEDIGTIRS 278 (442)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~l~~~i~~~---------------------------------~i~~~~~~--g~~~di~t~~~ 278 (442)
..+.+. +...+|..+++|.+++.+ ++++|... ..+.+++|.-.
T Consensus 224 d~l~~~--~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~ 301 (433)
T KOG1462|consen 224 DLLSEK--ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLS 301 (433)
T ss_pred HHHhcC--CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHH
Confidence 644332 334566667777766421 23444443 56889999999
Q ss_pred HHHHhh--hhhcCCCCccccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEece
Q 013483 279 FFEANL--ALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 279 ~~~an~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~ 355 (442)
|+++|+ .+....+..... ...+... + +.+ .++.++++|.|+ ++.|++|+||.+|.||+++++.+|
T Consensus 302 y~eiN~~k~~~~l~~e~~~~------k~~~~~~--~-l~g---~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nS 369 (433)
T KOG1462|consen 302 YMEINRDKKLKKLCSEAKFV------KNYVKKV--A-LVG---ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANS 369 (433)
T ss_pred HHhhhHHHHHHHhccccccc------cchhhhe--e-ccc---hhhccCCCceecccceeeeeeecCCccccCCcEEEee
Confidence 999994 433322221111 1111000 1 111 168899999999 888899999999999999999999
Q ss_pred EEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEcc
Q 013483 356 MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~ 407 (442)
.+|.+ +.||++|.|.+||||+++.||+|+++.|
T Consensus 370 ilm~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 370 ILMDN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred EeecC-------------------cEecCCcceecceecccceecCCCeeee
Confidence 99998 9999999999999999999999999986
No 21
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=308.86 Aligned_cols=326 Identities=25% Similarity=0.379 Sum_probs=259.8
Q ss_pred cceEEEEEeCC--CCCCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILAaG--~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
++++||||.|| +||||+||+.+.||||+|++|+ |||+|.|+.+.+ .|..+|+++--|+.+.+.+|+.... ..
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~---~e- 75 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ---QE- 75 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH---hh-
Confidence 46899999999 7999999999999999999999 999999999998 6899999998888877777775432 11
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
|. +.+-+..+. .|+||+++|.++++.+-. ...+.|.|++||...+.++.++++.|+..+...||++
T Consensus 76 -~~---~pvrYL~E~-------~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 76 -FK---VPVRYLRED-------NPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred -cc---cchhhhccC-------CCCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 11 112222232 258999999999988854 3368999999999999999999999999999999999
Q ss_pred eecCCCcCCcccEEEEc-CCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC-
Q 013483 164 LPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF- 241 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d-~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~- 241 (442)
.....++.+.||.+..| .+++|..+.|||...- |+..++|+|+|++++|..+ ++.+
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i-~~v~~ 199 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAI-AEVYR 199 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHH-HHHHH
Confidence 99998889999999987 5789999999998764 4788999999999988533 2211
Q ss_pred ------------C----CCc---ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC--CCcc-cc---
Q 013483 242 ------------P----TAN---DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP--PMFS-FY--- 296 (442)
Q Consensus 242 ------------~----~~~---~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~--~~~~-~~--- 296 (442)
+ ... .+..|++..++...++|+|...++|..+.|+.+-+.||+.++++. .+.. +.
T Consensus 200 q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~p 279 (407)
T KOG1460|consen 200 QRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGP 279 (407)
T ss_pred HHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCC
Confidence 0 011 234678888888999999999999999999999999999999853 1111 11
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhc
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 374 (442)
+..+.+.+ +++|...+.+. .+.| .++.||.+++||+|++|.+|+++++
T Consensus 280 gt~a~Iig----------------dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d-------------- 329 (407)
T KOG1460|consen 280 GTQAEIIG----------------DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDD-------------- 329 (407)
T ss_pred CCCceEEe----------------eeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccC--------------
Confidence 01111222 44445555554 3444 4889999999999999999999998
Q ss_pred CCCcceEeCCCcEeeeeEeCCCcEECCCeEEccC
Q 013483 375 EGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 408 (442)
Q Consensus 375 ~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~ 408 (442)
+.|.+|+++.+|+||.+|.||..+-+...
T Consensus 330 -----~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 330 -----AEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred -----cEeeccceEEeeeecccccccceeeeccc
Confidence 99999999999999999999988887643
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.7e-41 Score=340.33 Aligned_cols=382 Identities=21% Similarity=0.263 Sum_probs=258.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|..+++++++|++++..+.+.+++.+. ...
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---~~~--- 72 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI---APD--- 72 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc---CCC---
Confidence 5678999999999999983 589999999999 999999999999999999999999888888777431 100
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+.+.. +. .+.|++++++.++.++... .++|++++||+ +++.+ +.++++ +.+.++++++..
T Consensus 73 ----~~~~~--~~-------~~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~ 134 (446)
T PRK14353 73 ----AEIFV--QK-------ERLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLG 134 (446)
T ss_pred ----ceEEE--cC-------CCCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEE
Confidence 11111 11 1368999999999888521 37899999998 55544 677776 444566777777
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ +..|+.+.. ++++|..+.|||...... ..+.++++|+|.|+++.|.+++++....
T Consensus 135 ~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 194 (446)
T PRK14353 135 FRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGND 194 (446)
T ss_pred EEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhccc
Confidence 66543 567888777 578999999988643210 0124679999999998776676654321
Q ss_pred ---Ccccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhhhcCC------CCcccc-------CCCCccccc
Q 013483 244 ---ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHP------PMFSFY-------DATKPIYTS 305 (442)
Q Consensus 244 ---~~~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~~------~~~~~~-------~~~~~~~~~ 305 (442)
...+..+.++.+++. .+++++..+ +.|.++++|+||.+|+..+..+. ....+. ++.+.+.++
T Consensus 195 ~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 274 (446)
T PRK14353 195 NAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRD 274 (446)
T ss_pred CCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCC
Confidence 223346778888764 579999886 57999999999999997553221 111222 223333333
Q ss_pred CccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--hhhhcCCCcceEe
Q 013483 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV--ASLLAEGRVPVGI 382 (442)
Q Consensus 306 ~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i 382 (442)
+.+++++.+.. ++.|+++|.|+ .+.|.+++||++|+|++++.|...+++|+++.+.+... .+...++ +.+
T Consensus 275 ~~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i 347 (446)
T PRK14353 275 VVIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKV 347 (446)
T ss_pred CEECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEE
Confidence 34444333311 34555555555 44445556666666665555554444444422222110 0111111 566
Q ss_pred CCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 383 GENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 383 ~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++++.+++++||++|.||+++++.+..+... ..+||++++||.+++| ||++++||+||+|
T Consensus 348 ~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 348 NHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred CCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 6666777889999999999998877665444 3589999999999887 9999999999875
No 23
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-40 Score=338.76 Aligned_cols=375 Identities=21% Similarity=0.252 Sum_probs=255.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++++|++++..+.+.+++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999983 789999999999 99999999999975 89999999887777666532 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.++. +.+ ++|++++++.++.++.. .++|++++||. +...++.++++.|+++++++|+++.+.
T Consensus 64 -~~~~~--~~~-------~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QEE-------QLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cCC-------CCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 12211 111 36999999999998853 37899999998 445668999999988889999988877
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (442)
++ +..||.+..+ ++++ .+.||+..+... ...++.++|+|+|++++|.++++...+..
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 64 6789988776 6777 777876533210 01257899999999998877666533221
Q ss_pred -cccccchhhhcccccceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccc-------cCCCCcccccCcc
Q 013483 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSF-------YDATKPIYTSRRN 308 (442)
Q Consensus 245 -~~~~~~~l~~~i~~~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~-------~~~~~~~~~~~~~ 308 (442)
.....|+++.+ .++.+|...++ |.+++++++|..+...+.... ....+ +++.+.+..++.+
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 12224666665 34788888887 667779999988766543210 11122 2222233333322
Q ss_pred ------------CCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhh--hhhh
Q 013483 309 ------------LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV--ASLL 373 (442)
Q Consensus 309 ------------~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~ 373 (442)
++++.| .++.+.+++|+++|.|..+.+.+++|++++.|++++.|++.+++|++..+.+... .+..
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i 344 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTI 344 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEE
Confidence 333333 2334444556666666544555666777777777766665555555433222110 1112
Q ss_pred cCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 374 AEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+++ +.+++.+++++++||++|.||+++++.+..+...+ .+||++++||.+++| ||++++||+||+|
T Consensus 345 g~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 345 GEN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred cCC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 222 34445556677889999999999988877766665 689999999999876 8999999999875
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3e-40 Score=336.78 Aligned_cols=384 Identities=22% Similarity=0.289 Sum_probs=264.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|+++|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.+++++++++++++..+++.+++.. +
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~------~---- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD------R---- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC------C----
Confidence 46789999999999998 4689999999999 99999999999999999999999988888777632 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++. +.. ++|++++++.++.+++.. .++|++++||. ++ ..++.++++.|++.++++|+++.
T Consensus 67 ---~~~~~--~~~-------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFAL--QEE-------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEE--cCC-------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11111 111 369999999999988531 26799999997 44 45689999999887788888776
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~- 243 (442)
..++ +..|+.+..|+++++..+.|||...... ...++.++|+|+|+++.|.+++++....
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6543 5668888888888999999987532100 0135679999999998665666654332
Q ss_pred --Ccccccchhhhcccc-cceEEEEecce--eeecCChHHHHHHhhhhhcCCC------CccccCCC-------Ccccc-
Q 013483 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHPP------MFSFYDAT-------KPIYT- 304 (442)
Q Consensus 244 --~~~~~~~~l~~~i~~-~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~~------~~~~~~~~-------~~~~~- 304 (442)
......+.++.+++. .++++|.++++ |+++++++||.+|+..+..+.. ...+++++ +.+..
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 122235777777754 57999998865 5678899999998865432211 11222221 22222
Q ss_pred -----------cCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchh-hh-h
Q 013483 305 -----------SRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDA-EV-A 370 (442)
Q Consensus 305 -----------~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~-~~-~ 370 (442)
.+.++.++.| .++.|.++.|+++|.|+.+.+.+++||++|.|++++.|...+++|++..+... .. .
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 351 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKK 351 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEee
Confidence 2233333333 34444556667777776555566777777777776666654444544222111 00 1
Q ss_pred hhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 371 SLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 371 ~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
....++ +.+++.+.+++++||++|.||+++.+.|..+..+ ..+++++++||.++++ ||++++||+||+|
T Consensus 352 ~~i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 352 STIGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred eEECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 111222 4555666667888888999999988887666555 4589999999999886 8999999999875
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8e-40 Score=332.93 Aligned_cols=381 Identities=20% Similarity=0.275 Sum_probs=272.6
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++++++++|++++..+.+.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999984 689999999999 9999999999999999999999988877777764310
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-e-eecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
.+.++. +.. +.|++++++.++.+++.. .++|++++||. + ...++.++++.|++.+++++++..+.
T Consensus 67 ~i~~v~--~~~-------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVE--QQP-------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEE--eCC-------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 133332 111 258999999998888531 35799999999 3 44568999999998888888877665
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (442)
++ +..||.+..|++++|.++.|||...... ..++++++|+|+|++++|.+++++..+..
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 5669998888889999999998642210 02467899999999998877776644321
Q ss_pred -cccccchhhhcccccceEEEEecce--eeecCChHHHHHHhhhhhcCC------CCccccCC-----------------
Q 013483 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA----------------- 298 (442)
Q Consensus 245 -~~~~~~~l~~~i~~~~i~~~~~~g~--~~di~t~~~~~~an~~~l~~~------~~~~~~~~----------------- 298 (442)
..+..+.++.+. .+..+.+.++ |..+++++++..+...+.... +...++++
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 122345555553 3455656654 566999999988766543211 11111222
Q ss_pred --CCcccccCccCCCcee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--hhhhh
Q 013483 299 --TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--VASLL 373 (442)
Q Consensus 299 --~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--~~~~~ 373 (442)
...+.+.+.+++++.+ .++.|.++.|+++|.|+.+.+.+++||++|.|++++.|++.+++|+++.+.... ..++.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i 351 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQL 351 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEecccc
Confidence 1223333444555555 455566677778887775566678888888888888887666666665444321 12333
Q ss_pred cCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc-eeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 374 AEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.++ +.|++++++++++||++|.||+++++.+..+.... .+||++++||.++++ ||++++|++||+|
T Consensus 352 ~~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v 423 (450)
T PRK14360 352 GEG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTI 423 (450)
T ss_pred CCC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEE
Confidence 333 56677777788899999999999999987777764 589999999999876 8999999999875
No 26
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-39 Score=318.90 Aligned_cols=380 Identities=18% Similarity=0.315 Sum_probs=281.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
...+|||+||.-.-+||+|+|...|++|||++|. |||+|+|+||.++|+.++++++..+..++.+|+++.. |....++
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~~~~~ 99 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYLPMSF 99 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-ccccccc
Confidence 3568999999999999999999999999999999 9999999999999999999999999999999998743 3323232
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc-----CCcEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADIT 160 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~-----~~~~t 160 (442)
. .+.|... . +...|+++|...+. +...+||++++||++.+.+|.+++++|+.+ ++.+|
T Consensus 100 ~--v~ti~s~-~---------~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMT 162 (673)
T KOG1461|consen 100 I--VVTICSG-E---------SRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMT 162 (673)
T ss_pred e--EEEEcCC-C---------cCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEE
Confidence 1 1222221 1 24678888776532 122589999999999999999999999654 56788
Q ss_pred EEEeecCCCcCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 161 ISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
|++.+.......+--.+..|. +.++..+.+-. ....+.+++++++-..++-.. +.+|.++++-++++.++..+.++
T Consensus 163 mv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~--~~~~~~~l~~sl~d~~~~v~v-r~DL~dc~IdIcS~~V~sLF~dN 239 (673)
T KOG1461|consen 163 MVFKESSTRETTEQVVIAVDSRTSRLLHYQKCV--REKHDIQLDLSLFDSNDEVEV-RNDLLDCQIDICSPEVLSLFTDN 239 (673)
T ss_pred EEEeccccccCCcceEEEEcCCcceEEeehhhc--ccccccccCHHHhcCCCcEEE-EccCCCceeeEecHhHHHHhhhc
Confidence 888876422123333455554 56888776511 122356678888877655444 56899999999999998644333
Q ss_pred hCC--CCcccccchhhhcccccceEEEEecc--eeeecCChHHHHHHhhhhhcCCCCccccCCCCcccc-------cCc-
Q 013483 240 RFP--TANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT-------SRR- 307 (442)
Q Consensus 240 ~~~--~~~~~~~~~l~~~i~~~~i~~~~~~g--~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~-------~~~- 307 (442)
|. .+.+|...+|..-+-+.+|+++.... |..++.+++.|...++.++.|+..+ +-|+....+ +..
T Consensus 240 -FDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP--~Vpd~~~~~~q~~~~~r~~I 316 (673)
T KOG1461|consen 240 -FDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYP--LVPDINFSGNQTFSLERRNI 316 (673)
T ss_pred -ccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccc--ccccccCCCCceeeeccccc
Confidence 32 24566667777777789999998875 8999999999999999999987322 112221111 111
Q ss_pred -cCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 308 -NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 308 -~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
-++.+.+ ..+.+. ++.||.++.|+ ++.|.+|+||.+|.||.+++|.++.++.+ |.||
T Consensus 317 Yk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Ig 377 (673)
T KOG1461|consen 317 YKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIG 377 (673)
T ss_pred ccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEEC
Confidence 1222333 223332 68889999999 78889999999999999999999999887 9999
Q ss_pred CCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCccC
Q 013483 384 ENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 442 (442)
Q Consensus 384 ~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~i 442 (442)
+||.|.+|+||+++.|++|+++.. |+.+|.+ +|+|++-.++.++.|
T Consensus 378 dnc~I~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 378 DNCRIDHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred CCceEeeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 999999999999999999999975 5666666 445777777666543
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-40 Score=296.10 Aligned_cols=233 Identities=27% Similarity=0.507 Sum_probs=200.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~~~ 87 (442)
|++||||||.||||+|+|...||+|+||.+| |||+|.|+.|..+||++|.|+++++.. .+++++ +++.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~ll------Gdgs~~g- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELL------GDGSDFG- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhh------cCccccC-
Confidence 7999999999999999999999999999999 999999999999999999999998664 444443 5666666
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..|++ +.|.++|+..+.+++.+ ++|+++.||.++..++.++++.+.++..+.++++.+++
T Consensus 73 --v~itY~~Q~~-------p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 73 --VDITYAVQPE-------PDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred --cceEEEecCC-------CCcHHHHHHHHHhhcCC------CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 4455555654 57999999999999984 89999999998777999999999998889999999998
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Ccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND 246 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~~ 246 (442)
+ |++||+++.|+++++.++.|||..+. |+++-+|+|+|++++|. .++...|. +..
T Consensus 138 d--P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGE 193 (286)
T COG1209 138 D--PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGE 193 (286)
T ss_pred C--cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCc
Confidence 6 89999999998899999999999875 58999999999999994 67776665 333
Q ss_pred cc-cchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 247 FG-SEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 247 ~~-~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
++ .|+++.++++ ..+......|.|.|.||+++|++||+....
T Consensus 194 lEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 194 LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 33 6888888875 456666777899999999999999998875
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=4.1e-37 Score=292.69 Aligned_cols=244 Identities=19% Similarity=0.295 Sum_probs=189.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccC------
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY------ 79 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~------ 79 (442)
|.+|+|||||||.||||+|+|..+||||+||+|+ |+|+|+++++..+|+++|+|++++..+++.+|+...+.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4589999999999999999999999999999999 999999999999999999999999999999998643211
Q ss_pred ----------CCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee-------
Q 013483 80 ----------GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (442)
Q Consensus 80 ----------~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~------- 142 (442)
....+++ +.+.+..|. +++||++|++++..++.+ ++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccc
Confidence 0000111 223333333 258999999999999963 6899999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc----CCCc---eEEEEeCCCccccccccccccccccccccc
Q 013483 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (442)
Q Consensus 143 -~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d----~~~~---v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (442)
.++.++++.|.++++.++++. ..+ .++..||.+..| ++++ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~~-~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLAK-RMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEEE-EcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 478899999987776664443 332 227899999983 3564 5888999864321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC-C-cccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT-A-NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 215 ~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~-~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
..++++++|+|+|++++|. .++...+. . .....|+++.++++++++++.++|+|+|+|+|++|++||..+.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 0246899999999999986 55553332 1 1123588999999889999999999999999999999999875
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.9e-36 Score=283.85 Aligned_cols=241 Identities=37% Similarity=0.620 Sum_probs=189.9
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEe-ccChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
||||||||+||||+|+|..+||||+|++|++|||+|+|++|.++|++++++|+ ++..+.+.+++..... ++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~------~~-- 72 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYK------FG-- 72 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGG------GT--
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccc------cc--
Confidence 69999999999999999999999999999989999999999999999955555 4677788888865432 22
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+++....|.. ..||++||+.+...+... ...++|++++||++++.++.++++.|+++++++++.+...+.
T Consensus 73 -~~i~~i~~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 73 -VKIEYIVQPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp -EEEEEEEESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred -ccceeeeccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 2222222332 269999999999999851 001249999999999999999999999998854443333334
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh--hhCCCCcc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTAND 246 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~--~~~~~~~~ 246 (442)
.+++.||++..|++++|.++.|||..+.. +.++++|+|+|++++|..+++ ........
T Consensus 143 ~~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~ 202 (248)
T PF00483_consen 143 EDPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGED 202 (248)
T ss_dssp SGGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSH
T ss_pred cccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhh
Confidence 44789999999988999999999986541 368899999999999976654 11123445
Q ss_pred cccchhhhccccc-ceEEEEecc--eeeecCChHHHHHHhhhhhc
Q 013483 247 FGSEIIPASANEQ-FLKAYLFND--YWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 247 ~~~~~l~~~i~~~-~i~~~~~~g--~~~di~t~~~~~~an~~~l~ 288 (442)
+..++++.+++++ .+.++..++ +|.|+|+|++|++||+.+++
T Consensus 203 ~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 203 FLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 6678999999875 566888888 79999999999999999874
No 30
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=6.2e-36 Score=285.40 Aligned_cols=244 Identities=18% Similarity=0.279 Sum_probs=191.6
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC-----
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~----- 80 (442)
|.+|+|||||||.||||+|+|..+||||+||+|+ |+|+|+++++.++|+++|+|++++..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999996432110
Q ss_pred -----------CCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee-------
Q 013483 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (442)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~------- 142 (442)
...+++ +.+.+..|.. ++||++|+++++.++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000011 2233333432 4799999999999985 37899999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEc----CCC---ceEEEEeCCCccccccccccccccccccccc
Q 013483 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (442)
Q Consensus 143 -~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d----~~~---~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (442)
.++.++++.|.+.+++++++....+ ++..||.+..| +++ +|+.+.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4789999999888777554443332 47889999985 355 68899999964321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 215 ~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
..++++++|+|+|++++|..+ ....+. ......++++.+++++++.+|.++|+|+|+|+|++|++|+..+.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 024688999999999998655 433222 12233588999999899999999999999999999999999984
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.8e-35 Score=274.59 Aligned_cols=232 Identities=26% Similarity=0.423 Sum_probs=192.9
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+|+.+.. .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~-----~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYE-----KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccc-----ccCC--
Confidence 7899999999999999999999999999999 9999999999999999999999999999998886411 0111
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+++....+.. +.|++++|+.++.++... .++|++++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIETE-------PLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCCC-------CCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 3333322221 369999999999988631 3689999999999999999999999999999999987654
Q ss_pred CcCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 169 SRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 169 ~~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
+..||++..|+ +++|..+.|||..+. ++++++|+|+|++++|..+ .. ...+.
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 57899999887 789999999987542 3578999999999999644 32 12234
Q ss_pred ccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
..++++.++++.++.+|+++|+|.|++||++|++|++.++
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 4678999999889999999999999999999999998764
No 32
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=4.4e-35 Score=275.91 Aligned_cols=235 Identities=26% Similarity=0.408 Sum_probs=191.0
Q ss_pred EEEEeCC--CCCCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 11 aVILAaG--~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
||||||| .||||+|+|..+||||+|++|+ |||+|+|++|.+ +|+++++|++++..+++.+|+.+... .++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-----~~~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-----EFN- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-----ccC-
Confidence 6999999 8999999999999999999999 999999999999 69999999999988899999865210 111
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..+.. ++||+++++.++.++... ..++|+|++||++++.++.+++++|+++++++|+++.+.+
T Consensus 74 --~~i~~~~~~~-------~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 74 --VPIRYLQEYK-------PLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred --ceEEEecCCc-------cCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1222222221 379999999999888521 1368999999999999999999999999999999988765
Q ss_pred CCcCCcccEEEEc-CCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 013483 168 DSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (442)
Q Consensus 168 ~~~~~~~g~v~~d-~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--- 243 (442)
.+.+..||++..| ++++|..+.|||..+. +.++++|+|+|++++|.. +.+..+.
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~-i~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDT-IKKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHH-Hhhhcccccc
Confidence 4447889999888 6789999999987432 357899999999999854 4432221
Q ss_pred ---------------CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 244 ---------------ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 244 ---------------~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
..++..++++.++++.++++|.++|+|.||+|+++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1224468999999988999999999999999999999999864
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=9.3e-35 Score=275.92 Aligned_cols=235 Identities=23% Similarity=0.409 Sum_probs=186.9
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccC-hhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~~ 84 (442)
|+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+|++|..+|+++|+|++.+. .+.+.+++.+ +.+
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~------g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC------ccc
Confidence 5679999999999999999999999999999999 9999999999999999999887644 4567777643 223
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-eecCHHHHHHHHHHcCCcEEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~~~~~~~~~tl~~ 163 (442)
|+.. +.+..|.. ++|+++|+..+.+++.+ ++++++.||.+ ++.++.++++.|.+.++++|+++
T Consensus 74 ~g~~---i~y~~q~~-------~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN---LQYKVQPS-------PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce---eEEEECCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 4322 22223332 47999999999999963 57999999985 47889999999988888899988
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+.++ ++.||++..|++++|+++.|||..+. ++++++|+|+|+++++. .++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCC
Confidence 77765 68999999998899999999997543 46889999999999885 45544332
Q ss_pred -Cccc-ccchhhhcccccceE-EEEecc-eeeecCChHHHHHHhhhhh
Q 013483 244 -ANDF-GSEIIPASANEQFLK-AYLFND-YWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 -~~~~-~~~~l~~~i~~~~i~-~~~~~g-~~~di~t~~~~~~an~~~l 287 (442)
...+ ..++++.+++++.+. .+..+| .|+|+||+++|.+|++.+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 1112 257888888876654 345567 5999999999999999886
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=3e-34 Score=267.57 Aligned_cols=232 Identities=25% Similarity=0.410 Sum_probs=185.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~ 87 (442)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+++.++|++++++++++.. +++.+++.... .++
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~------~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGS------DLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccc------ccC-
Confidence 7899999999999999999999999999999 99999999999999999999987654 67777775321 222
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEeec
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
+.+.+..+.. +.|++++++.++.++.. ++|+|++||+++ +.++.++++.|.++++++|+++.+.
T Consensus 73 --~~i~~~~~~~-------~~G~~~al~~a~~~~~~------~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQPK-------PGGLAQAFIIGEEFIGD------DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCCC-------CCCHHHHHHHHHHhcCC------CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2232222321 36999999999998863 789999999854 5679999999988888889888776
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Cc
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AN 245 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~ 245 (442)
++ +..||.+..|++|+|+.+.|||..+. +.+.++|+|+|++++| ++++...+. ..
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l-~~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVF-EIAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHH-HHHHhcCCCCCC
Confidence 54 56899999988899999999986542 3568999999999988 456543322 12
Q ss_pred -ccccchhhhcccccceEEEEec--ceeeecCChHHHHHHhhhhh
Q 013483 246 -DFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 246 -~~~~~~l~~~i~~~~i~~~~~~--g~~~di~t~~~~~~an~~~l 287 (442)
....++++.+++++++.++.++ |+|.||+||++|.+||+.+.
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 2225888998887777777766 99999999999999999763
No 35
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=7.5e-34 Score=266.44 Aligned_cols=234 Identities=25% Similarity=0.353 Sum_probs=189.2
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC--
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD-- 87 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~-- 87 (442)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++.+....+.+.++..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 99999999999999999999999999999999865221111111100
Q ss_pred c------------eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc
Q 013483 88 G------------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (442)
Q Consensus 88 ~------------~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~ 155 (442)
. .+.+. .+. .++||+++|++++.++. .++|++++||++++.++.++++.|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLV--DTG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeee--ecC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 01111 111 24799999999999886 379999999999999999999999999
Q ss_pred CCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHH
Q 013483 156 GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235 (442)
Q Consensus 156 ~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~ 235 (442)
++++|+++.+ ++..||.+..|+ ++|+.|.|||... +.++++|+|+|++++| +
T Consensus 145 ~~d~tl~~~~----~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ----PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec----CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9998877642 256799998875 6999999998532 2468999999999998 4
Q ss_pred HHhhhCCCCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 236 ~l~~~~~~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
.++.. ..++..|+++.++.+.++++|.++|+|.||+||++|.+|+..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55532 23456789999999889999999999999999999999999987654
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=5.7e-34 Score=270.22 Aligned_cols=231 Identities=26% Similarity=0.464 Sum_probs=184.8
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEec-cChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+|++|..+|+++|+|++. +..+.+.+++.. +.+|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~------g~~~g-- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQWG-- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc------ccccC--
Confidence 589999999999999999999999999999 99999999999999999998886 444566666643 33343
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-eecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.+..|.. +.|+++|+..+.+++.+ ++|+++.||.+ ++.++.++++.|.+.++++|+++.+.+
T Consensus 72 -~~i~~~~q~~-------~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 72 -VNLSYAVQPS-------PDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred -ceEEEEEccC-------CCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2333333432 47999999999999963 68999999974 577899999999888888999888876
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Ccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND 246 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~~ 246 (442)
+ +..||++..|++++|.++.|||..+. ++++++|+|+|+++++. +++...+. ..+
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 67899999998899999999996442 46789999999999874 55554332 222
Q ss_pred c-ccchhhhcccccceEEEEe-cce-eeecCChHHHHHHhhhhh
Q 013483 247 F-GSEIIPASANEQFLKAYLF-NDY-WEDIGTIRSFFEANLALT 287 (442)
Q Consensus 247 ~-~~~~l~~~i~~~~i~~~~~-~g~-~~di~t~~~~~~an~~~l 287 (442)
+ ..|+++.+++++.+..+.+ .|+ |.|+|||++|++||..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 2 2588888888766655555 575 999999999999998775
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.4e-33 Score=269.60 Aligned_cols=247 Identities=21% Similarity=0.332 Sum_probs=192.8
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCC-
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG- 82 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~- 82 (442)
...+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+|+++.++|+++|+|++++..+++.+|+...+.|...
T Consensus 4 ~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l 82 (302)
T PRK13389 4 INTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAML 82 (302)
T ss_pred ccccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhh
Confidence 344568999999999999999999999999999999 999999999999999999999999999999999643222100
Q ss_pred -----cccCCc-------eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee--------
Q 013483 83 -----VTFGDG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR-------- 142 (442)
Q Consensus 83 -----~~~~~~-------~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~-------- 142 (442)
..+..+ ...+.+..|. .+.|+++|+++++.++. +++|+|++||++++
T Consensus 83 ~~~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~ 149 (302)
T PRK13389 83 EKRVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQ 149 (302)
T ss_pred hhhhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccc
Confidence 000000 0122222232 24799999999998875 37899999999874
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcC-------CCceEEEEeCCCcccccccccccccccccccccc
Q 013483 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (442)
Q Consensus 143 ~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~-------~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (442)
.++.++++.|.+++++ |+++.+.++ +..||.+..++ +++|..+.|||.....
T Consensus 150 ~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~------------------ 208 (302)
T PRK13389 150 DNLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------ 208 (302)
T ss_pred ccHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC------------------
Confidence 6899999999888776 677766644 67899998763 3579999999974321
Q ss_pred cccceeeeeEEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 216 EKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 216 ~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
.++++++|+|+|++++| ++++...+. ...+..|+++.++++.++.+|.++|+|+|+|+|++|++|+..+.
T Consensus 209 -~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 -PSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred -CccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 23678999999999998 466653322 22344689999999889999999999999999999999999975
No 38
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.5e-33 Score=267.20 Aligned_cols=244 Identities=24% Similarity=0.317 Sum_probs=186.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC-----CCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~ 83 (442)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+++.++|+++++|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999999 9999999999999999999999999999999985432110 000
Q ss_pred cc-------CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec---CHHHHHHHHH
Q 013483 84 TF-------GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (442)
Q Consensus 84 ~~-------~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~~~ 153 (442)
.+ -...+++....|. +++|++++++.++.++.. ++|+|++||.++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQK-------EPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcC-------CCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHH
Confidence 00 0001222222222 247999999999998863 78999999997764 4899999998
Q ss_pred HcCCcEEEEEeecCCCcCCcccEEEEcC----CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEe
Q 013483 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (442)
Q Consensus 154 ~~~~~~tl~~~~~~~~~~~~~g~v~~d~----~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~ 229 (442)
+++++ ++++.+.+.+++..||.+..|+ +++|..+.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 77765 4555555544467899998875 2489999999864221 2357899999999
Q ss_pred HHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 230 KEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 230 ~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
+++|..+ ...... ......++++.+++++++++|.++|+|.|++||++|++||+.+.
T Consensus 207 ~~~~~~l-~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDIL-ENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHH-HhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9998654 331111 12233578999998889999999999999999999999999874
No 39
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-33 Score=253.20 Aligned_cols=249 Identities=22% Similarity=0.331 Sum_probs=207.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCC----
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS---- 81 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~---- 81 (442)
++-++|||+|||.||||.|.|+..||-||||.++ |+|+|+++.+.++||++|++||+.....+.+|+...+.+..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 99999999999999999999999999999999876653321
Q ss_pred -Cc--------ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC---HHHHH
Q 013483 82 -GV--------TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFV 149 (442)
Q Consensus 82 -~~--------~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~---l~~~l 149 (442)
++ +. ...+.+.+..|.. ++|.++|+++|+.++.+ ++|+|+.+|.++... +++++
T Consensus 81 ~~K~~~L~~v~~i-~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi 146 (291)
T COG1210 81 RGKRELLEEVRSI-PPLVTISFVRQKE-------PLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMI 146 (291)
T ss_pred hCHHHHHHHHHhc-ccCceEEEEecCC-------CCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHH
Confidence 11 11 1235566677764 68999999999999984 899999999987753 78999
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEE----EcCC-CceEEEEeCCCcccccccccccccccccccccccccceeeee
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMK----INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 224 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~----~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 224 (442)
+.+.+.+.. ++.+.+++..+.+.||++. .+++ .+|..+.|||...++ .|+++..|
T Consensus 147 ~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~G 206 (291)
T COG1210 147 ELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVG 206 (291)
T ss_pred HHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeee
Confidence 999888764 6677777766789999997 3333 489999999976654 57899999
Q ss_pred EEEEeHHHHHHHHhhhCCC--CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCC
Q 013483 225 VYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (442)
Q Consensus 225 iy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~ 290 (442)
.|+|++++|. +|++..+. ..-+..|.+..+++.+.+++|.+.|..+|+|++..|++|+..+..+.
T Consensus 207 RYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 207 RYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9999999995 67775544 23344789999999999999999999999999999999999997654
No 40
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=5.2e-33 Score=262.45 Aligned_cols=240 Identities=20% Similarity=0.268 Sum_probs=182.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCC-----CCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~ 83 (442)
|+|||||||.||||+|+|..+||+|+|++|+ |||+|+|+++.++|+++++|++++..+++.+|+...+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred ccC-------CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec---CHHHHHHHHH
Q 013483 84 TFG-------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (442)
Q Consensus 84 ~~~-------~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~~~ 153 (442)
.+. .....+....+. +++|++++++.++.++. .++|+|++||.++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 000112222222 24799999999999885 378999999997754 6999999999
Q ss_pred HcCCcEEEEEeecCCCcCCcccEEEEcC----CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEe
Q 013483 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (442)
Q Consensus 154 ~~~~~~tl~~~~~~~~~~~~~g~v~~d~----~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~ 229 (442)
++++++ +++...+..++..||.+..|+ +++|+.+.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888875 555454444467899988862 3699999999853221 2357899999999
Q ss_pred HHHHHHHHhhhCCCC-cccccchhhhcccccceEEEEecceeeecCChHHHHHH
Q 013483 230 KEILLNLLRWRFPTA-NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (442)
Q Consensus 230 ~~~l~~~l~~~~~~~-~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~a 282 (442)
+++|..+.+...... .....++++.+++++++++|.++|+|.||+||++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 999865543221111 22235788999988899999999999999999999875
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=1.2e-32 Score=258.64 Aligned_cols=243 Identities=22% Similarity=0.324 Sum_probs=189.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC--c
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD--G 88 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~--~ 88 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++.+..+|+++|+|++++..+++.+++.+....+....+.. .
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 99999999999999999999999999999999876432111111110 0
Q ss_pred eEEEecccccCC---cCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEee
Q 013483 89 CVEVLAATQTPG---EAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 89 ~v~i~~~~~~~~---~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.+.+........ ...+..+.|++++++++++++.. .++|++++||++++.++.++++.|..+++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 111111100000 00011136899999999998862 2689999999999999999999999989988887653
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
....||.+..|++++|..+.|||..+ +.++++|+|+|+++++. .++.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~-~l~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFD-YIDGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHH-hhccc---cc
Confidence 24678999998889999999998643 14678999999999985 44432 33
Q ss_pred ccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcC
Q 013483 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (442)
Q Consensus 246 ~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~ 289 (442)
.+..++++.+++++++++|.++|+|.+|+|+++|.+|++.+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 44568999999988999999999999999999999999888644
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=7.8e-33 Score=254.86 Aligned_cols=219 Identities=21% Similarity=0.351 Sum_probs=178.8
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ . .++
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~------~~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-S------RFG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-c------cCC---
Confidence 589999999999999999999999999999 99999999999999999999999999999998864 1 112
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHH--HcCCcEEEEEeecC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~--~~~~~~tl~~~~~~ 167 (442)
+.+.+..+.. ++.|++++++.++.++.+ ++|++++||++++.++.++++.|+ +.++.+++...+.+
T Consensus 70 ~~i~~~~~~~------~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEPD------ELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCCC------cccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 2233222220 136999999999998863 789999999999999999999998 45666676665544
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
. ...||.+..|++++|..+.++|.. ++.++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 578899988888899998887642 367999999999988654321 122
Q ss_pred ccchhhhcccccceEEEEecceeeecCChHHHHHH
Q 013483 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~a 282 (442)
..++++.++++.++.+|.++|+|.|++||++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 35789999988899999999999999999999875
No 43
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2.8e-32 Score=253.73 Aligned_cols=232 Identities=26% Similarity=0.407 Sum_probs=187.3
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+... ++..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~------~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSR------FGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhh------cCCe
Confidence 7899999999999999999999999999999 99999999999999999999999988899888865321 2211
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+.++. +. .+.|++++++.++.++. .++|++++||++++.++.++++.|..++.++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22222 22 13699999999998885 2789999999999999999999999888889988887654
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--Ccc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (442)
+..|+.+..|+ ++|..+.+||..+. +.+.++|+|+|++++|..+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 56788888874 59999999886432 2567999999999988644 432221 112
Q ss_pred cccchhhhcccc-cceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 247 ~~~~~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
...++++.+++. .++.+++++++|.+++||++|.+||+.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 235788888864 579999999999999999999999998874
No 44
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=1.5e-31 Score=246.37 Aligned_cols=223 Identities=28% Similarity=0.494 Sum_probs=181.8
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|+++++.+.+.+++...+. ++.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~------~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYR------GGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccc------cCce-E
Confidence 69999999999999999999999999999 99999999999999999999999988888888864221 1111 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.+.. +.. ..|++++++.+++++. .++|++++||++++.++.++++.|++.+.++++++.+.++
T Consensus 73 ~~~~--~~~-------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVI--EPE-------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEE--CCC-------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 1211 111 3699999999998884 3799999999998889999999998888888888877654
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (442)
...|+.+..|++++|..+.+|+.... +++.++|+|+|++++|..+ ... ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~-~~~---~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEI-PAD---AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhC-Ccc---CCChHHH
Confidence 46788888888889999999876431 3578999999999998643 221 2344568
Q ss_pred hhhhcccccceEEEEecceeeecCChHHHHHHh
Q 013483 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 251 ~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
+++.+++.+++.+|+++++|.||+|++||.+|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 889888777999999999999999999999883
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.98 E-value=4.4e-31 Score=242.39 Aligned_cols=217 Identities=33% Similarity=0.595 Sum_probs=179.6
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++..... ++.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~------~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSK------FGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhh------cCce-E
Confidence 69999999999999999999999999999 99999999999999999999999988888888854321 1111 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++. +.. +.|++++++.++.++. .++|++++||++++.++.++++.|+++++++++++.+.+ +
T Consensus 73 ~~~~--~~~-------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 135 (217)
T cd04181 73 EYVV--QEE-------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D 135 (217)
T ss_pred EEEe--CCC-------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C
Confidence 2222 221 2699999999998883 489999999999999999999999999999999988776 3
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (442)
+..|+++..|++++|..+.|||..+. +.++++|+|+|+++++ ++++........+..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEIL-DYIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHH-HhhhhcCCcccccHHH
Confidence 67899999988899999999987542 2578999999999988 4555433223455578
Q ss_pred hhhhcccccceEEEEecceeeecC
Q 013483 251 IIPASANEQFLKAYLFNDYWEDIG 274 (442)
Q Consensus 251 ~l~~~i~~~~i~~~~~~g~~~di~ 274 (442)
+++.++++.++++|+++|+|.|++
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999889999999999999986
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=9.1e-31 Score=240.91 Aligned_cols=219 Identities=25% Similarity=0.477 Sum_probs=175.2
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||+|+||+|+|..+||+|+|++|+ |||+|++++|..+|+++++|++++..+.+.+++.+.. .++.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~------~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGS------KFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcc------ccCcc-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888875422 12211 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++ .+.. +.|++++++.+.+.. .++|+|++||++++.++.++++.|++++.++++++.+...
T Consensus 73 ~~~--~~~~-------~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYV--REDK-------PLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEE--ECCC-------CCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 222 2211 368999998776554 2789999999999999999999999888888888876543
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (442)
...||++..|+ ++|..+.|||... .++++|+|+|+++++.. +++ .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~-i~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL-IPK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhh-cCC---CCCcCHHH
Confidence 45688888875 8999999987532 46789999999999854 332 11112357
Q ss_pred hhhhcccc-cceEEEEecceeeecCChHHHHHHh
Q 013483 251 IIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 251 ~l~~~i~~-~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
+++.+++. .++.+|+++++|.+++||++|.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 88888875 5699999999999999999999986
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=3.9e-30 Score=235.99 Aligned_cols=205 Identities=18% Similarity=0.302 Sum_probs=159.9
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
++|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++..+++.+|+.+.+.+... +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 5899999999999999999999999999999 999999999999999999999999999999999764322211 1001
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc-----CCcEEE
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADITI 161 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~-----~~~~tl 161 (442)
.+.+.. +.. +.|++++++... ..+ .++|++++||++++.++.+++++|+++ ++++|+
T Consensus 78 ~i~~~~--~~~-------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIM--SED-------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEe--CCC-------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 133322 211 357888886542 233 268999999999999999999999884 788999
Q ss_pred EEeecCCCcC----CcccEEEEcCC-CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 162 SCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 162 ~~~~~~~~~~----~~~g~v~~d~~-~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
++.+.+++.. ..++++..|++ ++|..+.|||..+......+++.++..++.... ++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i-~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEI-RHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEE-ECCceecCEEEeCCCCC
Confidence 8888765431 23567777765 899999999988765555677777777766554 67899999999998764
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.96 E-value=3e-28 Score=220.63 Aligned_cols=199 Identities=51% Similarity=0.824 Sum_probs=157.4
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.||||+|+|..+||+|+|++|++|||+|+++++.++|+++++|++++..+++.+++.+...|+. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 69999999999999999999999999997689999999999999999999999999999999865332221 1111123
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++...+.. .++++.||+++++.++.++... ..++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444332210 1223589999999999988521 1368999999999999999999999988888887763
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-Cccccc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDFGS 249 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~-~~~~~~ 249 (442)
+++|+|+|++++|..+++...+. ...+..
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 16699999999987777653222 334557
Q ss_pred chhhhcccccceEEEEecceeeec
Q 013483 250 EIIPASANEQFLKAYLFNDYWEDI 273 (442)
Q Consensus 250 ~~l~~~i~~~~i~~~~~~g~~~di 273 (442)
|+++.++++.++++|.++|+|.|+
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 899999998999999999999986
No 49
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.96 E-value=1.8e-28 Score=226.98 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=167.1
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~----~~-------~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY----PN-------I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc----CC-------e
Confidence 69999999999999999999999999999 999999999999999999999999888888887531 11 3
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.++...+.. +.|++++++.++.++. ++|++++||++++. ++++.|.++++++|+++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 344322221 2699999999998883 78999999998765 456777777888898887743333
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh---CC--CCc
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FP--TAN 245 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~---~~--~~~ 245 (442)
...++....| ++++..+.+|+..+. ...+.++|+|+|+++++..+.+.. .+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3445443333 378888888876432 124679999999999876553321 11 123
Q ss_pred ccccchhhhcccc--cceEEEEecceeeecCChHHHHHHh
Q 013483 246 DFGSEIIPASANE--QFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 246 ~~~~~~l~~~i~~--~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
.+.+++++.++++ ..++.+.. ++|.||+++++|.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 4456888888873 34555555 8999999999999874
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.96 E-value=6.8e-28 Score=223.50 Aligned_cols=222 Identities=18% Similarity=0.260 Sum_probs=165.3
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
+||||||+|+||+|+|..+||||+|++|+ |||+|+++.+.++|++++++++++.. ....++...+... ..+ +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~-~~~-----~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL-APN-----A 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh-CCC-----C
Confidence 48999999999999999999999999999 99999999999999999999986432 1222222221100 001 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCc
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~ 170 (442)
.+...... ..|++++++.++..+.. .++|++++||++++.++.+++..|...+.+.++++...+
T Consensus 73 ~i~~~~~~--------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 73 TVVELDGE--------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEEEeCCC--------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22211111 36999999999988852 378999999999999998899888877777777665542
Q ss_pred CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHH-HHHHHHhhhC----CC-C
Q 013483 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----PT-A 244 (442)
Q Consensus 171 ~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~-~l~~~l~~~~----~~-~ 244 (442)
...|+.+..|++++|+.+.+|+.. +.+.++|+|+|+++ +|.+.++... .. .
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999888999999887432 24579999999987 6555555421 11 1
Q ss_pred cccccchhhhcccc-cceEEEEe-cceeeecCChHHH
Q 013483 245 NDFGSEIIPASANE-QFLKAYLF-NDYWEDIGTIRSF 279 (442)
Q Consensus 245 ~~~~~~~l~~~i~~-~~i~~~~~-~g~~~di~t~~~~ 279 (442)
..+..++++.++++ .++.++.+ +++|.|++||++|
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 22346788888865 57999999 6999999999987
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.94 E-value=2.1e-26 Score=217.97 Aligned_cols=233 Identities=21% Similarity=0.328 Sum_probs=164.9
Q ss_pred eEEEEEeCCCCCCCccccc-CCCccceeecC-ccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCcc
Q 013483 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~-~~pK~Llpi~g-~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~ 84 (442)
|++||||||.||||+|+|. .+||+|+|++| + |||+++++++... ++++++|+++++.. .+.+++.+ . ..+
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~~-- 74 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LPE-- 74 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CCC--
Confidence 6899999999999999996 69999999999 6 9999999999998 59999999987654 44445532 1 111
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeee--cCHHHHHHHHHH---cCCcE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~--~~l~~~l~~~~~---~~~~~ 159 (442)
+.++. ++. +.||++++..+..++... ..++.++|++||+++. .+|.+.++.+.+ .+..+
T Consensus 75 -----~~ii~--ep~-------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 75 -----ENIIL--EPE-------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred -----ceEEE--CCC-------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 22332 111 269999999998887521 1246899999999776 446667765443 56678
Q ss_pred EEEEeecCCCcCCcccEEEEcCCC-----ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 013483 160 TISCLPMDDSRASDFGLMKINNEG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (442)
Q Consensus 160 tl~~~~~~~~~~~~~g~v~~d~~~-----~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~ 234 (442)
|+.+.+... ...||++..+++. +|.+|.|||+...++.. .....+++++|+|+|+++.|.
T Consensus 139 t~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 139 TFGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EEEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHH
Confidence 888877543 5789999998653 89999999987543211 001236889999999999887
Q ss_pred HHHhhhCCCCc----------------ccccchhhh---------cc-cccceEEEEecceeeecCChHH
Q 013483 235 NLLRWRFPTAN----------------DFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRS 278 (442)
Q Consensus 235 ~~l~~~~~~~~----------------~~~~~~l~~---------~i-~~~~i~~~~~~g~~~di~t~~~ 278 (442)
+.+++..|+.. .+..+.++. ++ +..++.+++.+..|.|+|++++
T Consensus 204 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 204 EELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 77776544310 000122222 11 2356888888889999999875
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=2.4e-26 Score=210.55 Aligned_cols=204 Identities=19% Similarity=0.332 Sum_probs=154.6
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|+|||||||.|+||.|+|...||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+.+.+ ..+.. .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS--SLSSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc--cccCC-c
Confidence 6899999999999999999999999999999 999999999999999999999999999998888765311 00111 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHH--HHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~--~~~~~~~~tl~~~~~ 166 (442)
.+.+....+.. +.|++++++.+++.+. ++|++++||++++.++.+++++ +...++++++.+...
T Consensus 77 ~v~~~~~~~~~-------~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLCE-------SAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCCC-------CCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 13333322221 4799999999998884 6899999999999999999965 444455666555443
Q ss_pred CCC-------cCCcccEEEEcCC---CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 167 DDS-------RASDFGLMKINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 167 ~~~-------~~~~~g~v~~d~~---~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
+.. ....++.+..|++ .++..+.+++... ....+.+++++.+++... ++++.++|+|+|+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~i-~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNVTI-RTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCEEE-EcCcccccEEEecCcCC
Confidence 321 2466888888876 4666666666543 334467888888876654 66899999999998763
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=1.2e-25 Score=205.67 Aligned_cols=201 Identities=23% Similarity=0.365 Sum_probs=152.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccCh-hhHHHHHHhhccCCCCcccCC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~ 87 (442)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++++|++++.. +.+.+++.+.. +... .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~----~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK----Q 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC----c
Confidence 6899999999999999999999999999999 99999999999999999999998765 45666665421 1111 0
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
. ..+....+. .+.|++++|+.+...+. ++|+|++||.+++.++.++++.|+++++.+|+++.+..
T Consensus 75 ~-~~~~~~~~~-------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 75 K-LDEVTIVLD-------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred c-eeEEEecCC-------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 0 111111111 13799999999998763 68999999999999999999999999999999887654
Q ss_pred CC-----------cCCcccEEEEcC-CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 013483 168 DS-----------RASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (442)
Q Consensus 168 ~~-----------~~~~~g~v~~d~-~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l 233 (442)
.. ....+.++..|+ ++++..+....+ ..+...++++++..+|+... ++++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~i-~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPRVTI-TTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCCEEE-EcCcccceEEEEEeeeC
Confidence 21 123456777765 457776654322 22455678888888876654 67899999999998763
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.93 E-value=2.6e-24 Score=199.09 Aligned_cols=221 Identities=24% Similarity=0.364 Sum_probs=167.2
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++++++++|++++..+++.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999985 689999999999 99999999999999999999999887777777643 1 1 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-ee-ecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
.++.... ..|++++++.++.+++. ..++|++++||. ++ ..++.++++.|++.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 2222111 25899999999998852 137899999999 33 456889999988777777777766553
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---Cc
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~---~~ 245 (442)
+..|+.+..+++++|..+.+|+...... ...+++++|+|+|+++.|.++++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 5678888777778999999987532110 0125679999999998776677654322 22
Q ss_pred ccccchhhhcccc-cceEEEEecc--eeeecCChHHH
Q 013483 246 DFGSEIIPASANE-QFLKAYLFND--YWEDIGTIRSF 279 (442)
Q Consensus 246 ~~~~~~l~~~i~~-~~i~~~~~~g--~~~di~t~~~~ 279 (442)
.+..++++.+++. .+++++.++| .|+.+++|.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 3346888888864 6799999975 47888898764
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=4.2e-24 Score=216.23 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=163.3
Q ss_pred eEEEEEeCCCCCCCcccccC-CCccceeecC-ccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCccc
Q 013483 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~-~pK~Llpi~g-~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~ 85 (442)
|.+||||||.||||+|||.. +||+|+|+.| + |||+|+++.|..+++++++|+++.... .+.+.+.. + +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~--~----- 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I--G----- 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c--C-----
Confidence 67999999999999999997 9999999987 6 999999999999999999999975543 33334322 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeec--CHHHHHHHH---HHcCCcEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~--~l~~~l~~~---~~~~~~~t 160 (442)
.....++. ++. +.||++++..+..++.... ..++.++|++||+++.. .|.++++++ .++++.+|
T Consensus 72 -~~~~~~i~--Ep~-------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 72 -KLASNIIL--EPV-------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred -CCcceEEe--ccc-------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 00011221 111 3689999988776662100 01245999999987653 377887765 33455566
Q ss_pred EEEeecCCCcCCcccEEEEcC------CCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 013483 161 ISCLPMDDSRASDFGLMKINN------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~------~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~ 234 (442)
+...+.. ++..||++..++ .++|.+|.|||+...++.. .....+++|+|+|+|+++.|.
T Consensus 141 lgi~p~~--p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTH--PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCC--CCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHH
Confidence 6665543 357899999873 2589999999986543211 111247899999999988766
Q ss_pred HHHhhhCCCC-----------------cccccchhh---------hccc-ccceEEEEecceeeecCChHHHHHHhh
Q 013483 235 NLLRWRFPTA-----------------NDFGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (442)
Q Consensus 235 ~~l~~~~~~~-----------------~~~~~~~l~---------~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~ 284 (442)
+.+++..|+. ..+..+.++ .+++ ..++++++.+..|.|+|++++|.++..
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 6665543320 001122333 2222 356888999999999999999999743
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=6.9e-23 Score=191.62 Aligned_cols=235 Identities=19% Similarity=0.231 Sum_probs=157.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
|++.+||||+|.++||. ||+|+|++|+ |||+|+++.|.++++++++|++++ +.+.+++.+ + +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--~------ 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--G------ 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--C------
Confidence 36889999999999994 7999999999 999999999999999999998853 556666532 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.++...+.. +.|+++... +...+.. ...+.|++++||+ +++ ..+.++++.|+.++.++++++.
T Consensus 63 ---~~v~~~~~~~-------~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~ 128 (245)
T PRK05450 63 ---GEVVMTSPDH-------PSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAV 128 (245)
T ss_pred ---CEEEECCCcC-------CCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeee
Confidence 1222222221 246655443 3333320 1136799999999 554 4478999988776666666665
Q ss_pred ecCC----CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 165 PMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 165 ~~~~----~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
+..+ .++..++++ .|++|+|+.|.+||....... . ......+++.++|+|+|+++++..+.+.
T Consensus 129 ~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~-~~~~~~~~~~~~Giy~~~~~~l~~~~~~- 195 (245)
T PRK05450 129 PIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------F-ADSAPTPVYRHIGIYAYRRGFLRRFVSL- 195 (245)
T ss_pred ecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------c-ccccCccccEEEEEEecCHHHHHHHHhC-
Confidence 5522 235556654 788899999999985331100 0 0000124788999999999998766542
Q ss_pred CCCCccccc--chhhhcccccceEEEEecc-eeeecCChHHHHHHhhhh
Q 013483 241 FPTANDFGS--EIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 241 ~~~~~~~~~--~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~ 286 (442)
.+....... ++++.+.++.+++++..++ +|.|+|+|+||.+|++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 196 PPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 222111111 1233333567899999996 999999999999999765
No 57
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=5e-23 Score=182.03 Aligned_cols=223 Identities=16% Similarity=0.243 Sum_probs=150.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEe-ccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
|..|+|||||||.|+||+| +.||||+.++|+ |+|+|+|++|.++|++++++|+ ++..+.+.+++.+ +++
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCc-----
Confidence 4679999999999999998 899999999999 9999999999999999999999 7777777777654 212
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH-HHHHHHHHHcCCcEEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQSGADITISC 163 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~~~~~~~~~tl~~ 163 (442)
..+++.+.... -.+++.+|+.++++++ ++|+++++|+++...+ +.+++. +.. ++.+
T Consensus 71 ----~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~~a----~~~-~li~ 127 (239)
T COG1213 71 ----NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLLEA----PGE-GLIV 127 (239)
T ss_pred ----ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHHhC----cCC-cEEE
Confidence 13444433322 1367999999999997 5799999999998885 444432 222 3333
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
...+......-.....+++|++..+..+.++. +-.++|++.|+++++....+.. ..
T Consensus 128 d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~-~e 183 (239)
T COG1213 128 DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELL-VE 183 (239)
T ss_pred eccccccccCceeEEEecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHH-hh
Confidence 33221111111122345789999987766533 2358899999999876443321 11
Q ss_pred CcccccchhhhcccccceEEEEe-----cceeeecCChHHHHHHhhhhhc
Q 013483 244 ANDFGSEIIPASANEQFLKAYLF-----NDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 244 ~~~~~~~~l~~~i~~~~i~~~~~-----~g~~~di~t~~~~~~an~~~l~ 288 (442)
.. ...+.+..+...+..-.. ...|.+++||||+.+|.+.+..
T Consensus 184 ~~---~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 184 RS---EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred hh---hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 11 112222222211111111 3579999999999999987753
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.90 E-value=3.6e-22 Score=186.05 Aligned_cols=227 Identities=19% Similarity=0.288 Sum_probs=153.7
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.+||||+|.|+||. ||+|+|++|+ |||+|++++|.++ ++++|+|++++ +.+.+++.+ + +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--~------ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--G------ 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--C------
Confidence 4689999999999996 7999999999 9999999999998 89999998864 566666642 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHc-CCcEEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQS-GADITISC 163 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~-~~~~tl~~ 163 (442)
+.++...+.. ..|+++ +..+...+.. ..+.|++++||+ ++. ..+..+++.|... +.++++++
T Consensus 63 ---~~~~~~~~~~-------~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPDH-------PSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCccc-------CchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2222222211 247775 5555555541 126799999998 554 5588999888766 67788887
Q ss_pred eecCCCc----CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 164 LPMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 164 ~~~~~~~----~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.+.+++. ...|+ +..++++.|+.|.+++...... +.. ..+.+.++|+|+|++++|..+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~ 192 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAAL 192 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhC
Confidence 7764421 22333 5567778999888765321100 000 013578999999999999766442
Q ss_pred hCCCCcccccchhh--hcc-cccceEEEEecceeeecCChHHHHHHhh
Q 013483 240 RFPTANDFGSEIIP--ASA-NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (442)
Q Consensus 240 ~~~~~~~~~~~~l~--~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~ 284 (442)
. .....+ .+.++ .++ ++.+++++..++.|.+||||++|.+|++
T Consensus 193 ~-~~~~~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 P-PSPLEQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred C-Cchhhh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 111111 12222 234 3556999999899999999999999975
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=1.4e-20 Score=175.32 Aligned_cols=225 Identities=17% Similarity=0.297 Sum_probs=149.8
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++++|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--~------ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--G------ 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--C------
Confidence 5789999999999995 6999999999 9999999999998 89999998864 566666643 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCC-cEEEEE
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISC 163 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~-~~tl~~ 163 (442)
++++...+.. ..|++ .+..+...+. .+.|++++||. +....+.++++.|+..+. .+++++
T Consensus 64 ---~~v~~~~~~~-------~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDDH-------LSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCccC-------CCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 1122111111 23566 4555555553 37899999997 335568899998876543 455555
Q ss_pred eecCCC----cCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 013483 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.+.+.. ++..+++ ..+++|+++.+.++|..... +.. ..+.+.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~~-~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DGE-SARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CCC-CCceeEEEEEEEeCHHHHHHH-Hc
Confidence 544321 1333443 44567899999875422110 000 013478999999999999653 32
Q ss_pred hCCCC-ccccc-chhhhcc-cccceEEEEecceeeecCChHHHHHHhhh
Q 013483 240 RFPTA-NDFGS-EIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 240 ~~~~~-~~~~~-~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
..... ..+.. +++ .++ .+.+++++..+++|+||++|+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 11222 445 344 56679999988999999999999999764
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.86 E-value=8.1e-21 Score=190.46 Aligned_cols=244 Identities=18% Similarity=0.294 Sum_probs=160.2
Q ss_pred cceEEEEEeCCCCCCCcccccC-CCccceeecCccceehhhhhhhhhcCCcEEEEEeccChh-hHHHHHHhhccCCCCcc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~-~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~ 84 (442)
++|.+||||||.||||||+|.. +||+|+|++|..|||+++++++...++.+.+||++..+. .+.+++.. . ..
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~--~~--- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-L--NK--- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-c--CC---
Confidence 3489999999999999999998 799999997644999999999999888887788876554 33334432 1 10
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC--HHHHHHHHH---HcCCcE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADI 159 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~~~---~~~~~~ 159 (442)
.. ..+ ++.+. ..+|+.|+..+..++.......+.-++|+|+|+++... |.+.++... +.+.-+
T Consensus 78 ~~-~~i-i~EP~----------~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lv 145 (478)
T PRK15460 78 LT-ENI-ILEPA----------GRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLV 145 (478)
T ss_pred cc-ccE-EecCC----------CCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 00 001 12112 14788888777666643100013468899999976543 555554432 235555
Q ss_pred EEEEeecCCCcCCcccEEEEcCC---------CceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeH
Q 013483 160 TISCLPMDDSRASDFGLMKINNE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 230 (442)
Q Consensus 160 tl~~~~~~~~~~~~~g~v~~d~~---------~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~ 230 (442)
|+...|... +..||++..++. .+|.+|.|||+...++.+. ....++||+|+|+|+.
T Consensus 146 t~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a 210 (478)
T PRK15460 146 TFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRA 210 (478)
T ss_pred EEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeH
Confidence 666655443 688999987642 2699999999987653321 1124799999999999
Q ss_pred HHHHHHHhhhCCCCc--------------c---cccchhh--------hcc--cccceEEEEecceeeecCChHHHHHHh
Q 013483 231 EILLNLLRWRFPTAN--------------D---FGSEIIP--------ASA--NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (442)
Q Consensus 231 ~~l~~~l~~~~~~~~--------------~---~~~~~l~--------~~i--~~~~i~~~~~~g~~~di~t~~~~~~an 283 (442)
+.+...+++..|... . +..+.++ +.+ +..++.+++.+-.|.|+|++.++.+..
T Consensus 211 ~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 211 GRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 977666665433200 0 0011111 111 124688888888899999999998874
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=3.9e-20 Score=170.38 Aligned_cols=243 Identities=21% Similarity=0.339 Sum_probs=162.5
Q ss_pred ceEEEEEeCCCCCCCcccccC-CCccceeecCccceehhhhhhhhh-cCCcEEEEEeccChh-hHHHHHHhhccCCCCcc
Q 013483 8 TVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~-~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~ 84 (442)
.|.+||||||.|||||||+.. .||++|++.+..+||+.+++++.. .+.+++++|++..+. .+++.+.+. ..+ .
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~-~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIE-N 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhc-c
Confidence 478999999999999999766 999999997633999999999988 678999999986654 444444321 000 0
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC--HHHHHHHHH---HcCCcE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADI 159 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~~~---~~~~~~ 159 (442)
.. . + ++.+. | ..|+.|+..+.-.+.+. .++.-++|+++|+++... |.+.++... +++.-+
T Consensus 77 ~~-~-i-llEP~------g----RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lV 141 (333)
T COG0836 77 AA-G-I-ILEPE------G----RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIV 141 (333)
T ss_pred cc-c-e-EeccC------C----CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEE
Confidence 00 1 1 22222 2 35888887776555431 113359999999977643 666665433 345555
Q ss_pred EEEEeecCCCcCCcccEEEEcCC------CceEEEEeCCCcccccccccccccccccccccccc-cceeeeeEEEEeHHH
Q 013483 160 TISCLPMDDSRASDFGLMKINNE------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK-PYIASMGVYLFKKEI 232 (442)
Q Consensus 160 tl~~~~~~~~~~~~~g~v~~d~~------~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Giy~~~~~~ 232 (442)
|+...|.. ++..||++...+. .+|.+|.|||+...++. +..+ .++||+|+|+|+...
T Consensus 142 TfGI~Pt~--PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~--------------yv~sG~y~WNSGmF~Fra~~ 205 (333)
T COG0836 142 TFGIPPTR--PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKK--------------YVESGEYLWNSGMFLFRASV 205 (333)
T ss_pred EEecCCCC--CccCcceeecCcccccCCceEeeeeeeCCCHHHHHH--------------HHHcCceEeeccceEEEHHH
Confidence 66665543 3689999987542 37999999999876532 2223 389999999999987
Q ss_pred HHHHHhhhCCCC--------ccc-----c---cc--------hhhhcc--cccceEEEEecceeeecCChHHHHHHhhh
Q 013483 233 LLNLLRWRFPTA--------NDF-----G---SE--------IIPASA--NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 233 l~~~l~~~~~~~--------~~~-----~---~~--------~l~~~i--~~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
+.+.+++..|+. ... . .+ -+.+.+ +..++..++.+-.|.|+|++.++.+....
T Consensus 206 ~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~ 284 (333)
T COG0836 206 FLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDK 284 (333)
T ss_pred HHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhc
Confidence 766666544431 000 0 00 111111 23578888888889999999999888554
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=2.4e-19 Score=151.90 Aligned_cols=219 Identities=14% Similarity=0.217 Sum_probs=147.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.|||||||.||||.|+|..+||+|+.|.|+ |||+++|+.|.++||++|+||+|+..++ .+++++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~-FeYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQ-FEYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHH-HHHHHHhcC----------
Confidence 6899999999999999999999999999999 9999999999999999999999998866 457776541
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
|.+++...... -....++..|++.+. +.-++.+|.++..++ ++.......-.....+.
T Consensus 69 -vtLvyN~kY~~-------yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYRE-------YNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHHh-------hhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 45554333211 257788999998885 567788998666553 11111111111111111
Q ss_pred CcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH---HHHhhhCC--C
Q 013483 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL---NLLRWRFP--T 243 (442)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~---~~l~~~~~--~ 243 (442)
. ...| .+..+.+++|+++.--.. .....+|+-.|+..... .+++...- .
T Consensus 127 ~-tnEw-~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 K-TNEW-LLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred C-Ccee-EEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 1 1223 455677899998864322 23567899999876543 34443221 1
Q ss_pred -CcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhh
Q 013483 244 -ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 -~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l 287 (442)
..-+.+++...-+++..++.-..+ +.-++++++++|.+....++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 112234455555555555555444 46789999999998877755
No 63
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.79 E-value=5.9e-19 Score=155.19 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=122.9
Q ss_pred ccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECC
Q 013483 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGA 360 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~ 360 (442)
.++|.+.+..+++|+|.|++.. ++.|+++++++ ++.| ..++||++++|.+++.|++ .+++|+
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred eeCCCCCcCCCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 4455555555555555555532 67888888888 7777 5799999999999999976 789999
Q ss_pred ccccchhhhhhhhcCC-CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCC
Q 013483 361 DFYETDAEVASLLAEG-RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKN 433 (442)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~ 433 (442)
++.|||..+.++++.. +.-+.||+++.+- +++|+++|+||++|+++|...++.|+.|+|++.||..+.| ||++
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~ 166 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAH 166 (260)
T ss_pred CCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcch
Confidence 9999999999999965 3448999999996 9999999999999999999999999999999999999888 9999
Q ss_pred cEEcCCccC
Q 013483 434 SVITDGFVI 442 (442)
Q Consensus 434 ~~v~~~~~i 442 (442)
++||..|.|
T Consensus 167 amiGg~S~v 175 (260)
T COG1043 167 AMIGGLSAV 175 (260)
T ss_pred heecccccc
Confidence 999998864
No 64
>PLN02917 CMP-KDO synthetase
Probab=99.78 E-value=3e-17 Score=156.24 Aligned_cols=233 Identities=17% Similarity=0.201 Sum_probs=150.5
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.++ +....+++.+++.+ + +
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~-~--~------ 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRG-F--G------ 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHH-c--C------
Confidence 57789999999999995 6999999999 99999999999876544433 34566777776643 1 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEE--E
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI--S 162 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl--~ 162 (442)
++++...+.. ..|++++ ..+.+.++. ..+.+++++||. ++..+ +.++++.+++. .++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 1222111111 1477766 466666642 147899999999 55544 78888877654 33333 2
Q ss_pred EeecCCCcCCcccEEE--EcCCCceEEEEeCCC--cccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 163 CLPMDDSRASDFGLMK--INNEGRVLSFSEKPK--GKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~--~d~~~~v~~i~ek~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+.+...+++.+||.+. .|++|++..|..++- ..+.. +++ ....+.++|+|+|+.+.|. .+.
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~------------~~~--~~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK------------VNP--QFPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc------------ccc--ccceEEEEEEEEeCHHHHH-HHH
Confidence 2333334478888775 677888775553322 11110 001 1225789999999999887 544
Q ss_pred hhCCC---CcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 239 WRFPT---ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 239 ~~~~~---~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
+..++ .....+|+. .+-++.++.++..+.....+||++||.++++.+..
T Consensus 238 ~l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 238 ELPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred cCCCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 43222 122223333 33345678888777677799999999999998753
No 65
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.71 E-value=8.8e-17 Score=149.56 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=114.4
Q ss_pred CCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCc
Q 013483 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGAD 361 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~~ 361 (442)
|.+.+.+++.++.++.| +.+.+. ++.||++|+|+ ++.| .++.||++|.|++++.|+. .+++|++
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~ 83 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDR 83 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCc
Confidence 44444444444444444 333332 57788888888 6677 5799999999999999975 6788998
Q ss_pred cccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcE
Q 013483 362 FYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSV 435 (442)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~ 435 (442)
+.+++....+..+.....+.||++|.|. +++|+++|.||++|++++...+..+++|+++++||.+++| ||++++
T Consensus 84 ~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~ 163 (255)
T PRK12461 84 NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAM 163 (255)
T ss_pred eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcE
Confidence 8888876665554322238999999997 8999999999999999999999999999999999999887 999999
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
|++||+|
T Consensus 164 Vg~gs~V 170 (255)
T PRK12461 164 MAGGSRI 170 (255)
T ss_pred ECCCceE
Confidence 9999874
No 66
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.71 E-value=7.3e-17 Score=151.45 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=114.7
Q ss_pred cCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEEC
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLG 359 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~ 359 (442)
++|.+.+.+++.++.++.| +.+.|. ++.||++|.|+ ++.| .+++||++|.|++++.|++ .+++|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 4455555555555555555 344443 57788888888 6666 5799999999999999976 68889
Q ss_pred Cccccchhhhhhhhc-CCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcC
Q 013483 360 ADFYETDAEVASLLA-EGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILK 432 (442)
Q Consensus 360 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~ 432 (442)
+++.+++....+..+ .....+.||++|+|. +++|+++|.||+++++++...+.++.+|++++|||.+++| ||+
T Consensus 85 ~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~ 164 (262)
T PRK05289 85 DNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGA 164 (262)
T ss_pred CCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECC
Confidence 888887765554443 111227999999997 8999999999999999999999999999999999999887 999
Q ss_pred CcEEcCCccC
Q 013483 433 NSVITDGFVI 442 (442)
Q Consensus 433 ~~~v~~~~~i 442 (442)
+++|++||+|
T Consensus 165 ~~~Ig~gs~V 174 (262)
T PRK05289 165 HAMVGGMSGV 174 (262)
T ss_pred CCEEeeecce
Confidence 9999999875
No 67
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.68 E-value=1.8e-15 Score=139.85 Aligned_cols=219 Identities=17% Similarity=0.198 Sum_probs=140.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh-hhHHHHHHhhccCCCCc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~ 83 (442)
++++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++++|++++.. +.+.+.+.. ..
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-----~~- 70 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-----KD- 70 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-----cC-
Confidence 357889999999999995 4579999999999 99999999999865 899999998665 333222211 00
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEE
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
..+.++. .. .+.+++++.+...+.+ .+.++++.||. ++..+ +.++++.+...+ .++
T Consensus 71 ----~~~~~~~--~~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 71 ----PKVTVVA--GG---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred ----CceEEeC--Cc---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0122221 11 2478999999887743 46899999999 55544 788888876553 333
Q ss_pred EEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 013483 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (442)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~ 241 (442)
.+.+..+ .+. ..+++|.+.++.+ ... ....-+.|.|+.+.|.++++...
T Consensus 129 ~~~~~~~----~~~--~v~~~g~~~~~~~---r~~----------------------~~~~~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIK--RSDDGGGIVDTPD---RSG----------------------LWAAQTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEE--EEcCCCceeecCC---hHH----------------------heeeeCCccchHHHHHHHHHHHH
Confidence 3434332 122 2244566655422 111 11233489999998887776532
Q ss_pred CCCcccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 242 ~~~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
.. ..+..|....+. .+.++..+..+..+.+|+|++||..|...+..
T Consensus 178 ~~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AE-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hc-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 11 111122222211 24567777766678899999999999877643
No 68
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.67 E-value=2e-15 Score=138.48 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=137.9
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccCh-hhHHHHHHhhccCCCCcccCC
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.++ ++++++|+++++. +.+.+.+....
T Consensus 1 ~aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~---------- 66 (217)
T TIGR00453 1 SAVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARA---------- 66 (217)
T ss_pred CEEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCC----------
Confidence 37999999999997 3479999999999 9999999999998 7999999998654 33333332100
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEee
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~ 165 (442)
.++++. +. .+..++++.+...+.+ .+.+++++||. ++..+ +.++++.+++. +.++.+.+
T Consensus 67 -~~~~~~--~~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~ 127 (217)
T TIGR00453 67 -VPKIVA--GG---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALP 127 (217)
T ss_pred -cEEEeC--CC---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEe
Confidence 022221 11 1356788888877621 47899999999 55554 78888877653 33444444
Q ss_pred cCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCc
Q 013483 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (442)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (442)
..+ ++...|++|.+..+.++... .... +.|.|+...|.+++........
T Consensus 128 ~~~------~v~~~~~~g~~~~~~~r~~~------------------------~~~~-~p~~f~~~~l~~~~~~~~~~~~ 176 (217)
T TIGR00453 128 VAD------TLKRVEADGFIVETVDREGL------------------------WAAQ-TPQAFRTELLKKALARAKEEGF 176 (217)
T ss_pred ccc------eEEEEcCCCceeecCChHHe------------------------EEEe-CCCcccHHHHHHHHHHHHhcCC
Confidence 332 34444566777777653211 2233 3799999988777654222111
Q ss_pred ccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhh
Q 013483 246 DFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (442)
Q Consensus 246 ~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~ 285 (442)
.+ .|....+.. +.++..+..+...++|++++||..|...
T Consensus 177 ~~-~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EI-TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CC-CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 11 222222222 5677777777677899999999988753
No 69
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.65 E-value=1.2e-15 Score=143.05 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=99.2
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCcc
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGADF 362 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~~~ 362 (442)
++++.+..++.|++.+.+.. ++.||++|+|+ .+.| .+++||++|.|++++.|++ .+++|+++
T Consensus 9 ~~~a~ig~~~~I~p~~~I~~----~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 9 DPGAKIGENVEIGPFCVIGP----NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCCCEECCCCEECCCcEECC----CCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 34444444444444444421 46666666666 4555 4677777777777777764 66677766
Q ss_pred ccchhhhhhhhcC-CCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcE
Q 013483 363 YETDAEVASLLAE-GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSV 435 (442)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~ 435 (442)
.+.+......... +...+.||++|.|+ ++.|+++|.||+++.+.+...+..+++||++++|+.++++ ||++++
T Consensus 85 ~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~ 164 (254)
T cd03351 85 TIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAM 164 (254)
T ss_pred EECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCE
Confidence 6655332222111 10128999999997 7999999999999999999999899999999999999887 899999
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
|+++|+|
T Consensus 165 Ig~~s~V 171 (254)
T cd03351 165 VGGGSGV 171 (254)
T ss_pred ECcCCEE
Confidence 9999875
No 70
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.64 E-value=1.4e-14 Score=134.45 Aligned_cols=226 Identities=16% Similarity=0.239 Sum_probs=140.1
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
+||||+|.|+||. +|+|++++|+ |||+|+++.+.++++++|+|++. .+.+.+.+.+ + + +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~--g---------~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-F--G---------I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-c--C---------C
Confidence 7999999999994 8999999999 99999999999988999999885 3445555432 1 1 1
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEeecCC
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~~~~ 168 (442)
+++...+.. ..|+. .+..+...+.. ...+.++++.||. ++..+ +.++++.+++...+++.++.+..+
T Consensus 61 ~~v~~~~~~-------~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 111111110 12433 33333333321 0136789999999 55554 788888876555666767666544
Q ss_pred CcC---CcccEEEEcCCCceEEEEeCCCccccccccccccccc--ccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 169 SRA---SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLG--LSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 169 ~~~---~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
... .+...+..|.+|.+..|...+.+.. .+.+. ..|+. ..++...|+|.|++++|.++... .+.
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~-------R~~~~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~-~~~ 198 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFD-------RDFFAKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAW-KPC 198 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCC-------CCcccccccccc---cceeEEEEEEeCCHHHHHHHHhC-CCC
Confidence 111 1233444466777766655432211 00000 11111 12567899999999999876543 222
Q ss_pred C-cccc-cchhhhcccccceEEEEecce-eeecCChHHH
Q 013483 244 A-NDFG-SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 279 (442)
Q Consensus 244 ~-~~~~-~~~l~~~i~~~~i~~~~~~g~-~~di~t~~~~ 279 (442)
. +..+ -+.|..+-.+.+|.+...+.. -..++||+|+
T Consensus 199 ~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 199 VLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1111 246777778899999888765 4699999997
No 71
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.64 E-value=1.2e-15 Score=139.96 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=77.9
Q ss_pred cchhhhcccccceEEEEecceeeecCChHHHHHHhhhhhcCCCCc----cccCCCC-cccccCccCCCceecCCceeeeE
Q 013483 249 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMF----SFYDATK-PIYTSRRNLPPSKIDDSKIVDSI 323 (442)
Q Consensus 249 ~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~~~i~~~~i~~~~ 323 (442)
.|.++.+++.+ ++..+|||.|+ ++|+++|++++...... ....+.. .+...+.+.+++.+.+ ++.
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g----~v~ 100 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD----QVI 100 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----CeE
Confidence 57788888755 78888999999 99999999999764210 0001111 1111222222222211 344
Q ss_pred EcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eE
Q 013483 324 ISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CI 392 (442)
Q Consensus 324 i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ 392 (442)
||+++.|+ .+.+ .+++||++|.|++++.|+..+++|++ |.||.+|.|.+ ++
T Consensus 101 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~~v~ 162 (231)
T TIGR03532 101 IGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAKPVV 162 (231)
T ss_pred ECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCCCeE
Confidence 45555554 3333 24555555555555555544444444 55555555542 45
Q ss_pred eCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 393 IDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 393 ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||++|.||+++++.. ..+|+++++|++|++|
T Consensus 163 IGd~v~IG~gsvI~~------g~~Ig~~~~IgagsvV 193 (231)
T TIGR03532 163 IEDNVLIGANAVILE------GVRVGKGAVVAAGAIV 193 (231)
T ss_pred ECCCcEECCCCEEcC------CCEECCCCEECCCCEE
Confidence 555555555555532 2345555555555444
No 72
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.63 E-value=4.1e-15 Score=143.41 Aligned_cols=174 Identities=24% Similarity=0.210 Sum_probs=99.7
Q ss_pred eeeecCChHHHH-HHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCC
Q 013483 269 YWEDIGTIRSFF-EANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 343 (442)
Q Consensus 269 ~~~di~t~~~~~-~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~ 343 (442)
.++-+++|..-+ ++...|.........++|++.+.+++.+++.+.+ +++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 466678887544 4444442222223456677777777666666666 344442 34555555554 3444 34555555
Q ss_pred cEECCCCEEeceEEECCccccchhhhhh-----------------------hhcCC-------------CcceEeCCCcE
Q 013483 344 SRINANVHLKDTMMLGADFYETDAEVAS-----------------------LLAEG-------------RVPVGIGENTK 387 (442)
Q Consensus 344 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-------------~~~~~i~~~~~ 387 (442)
|.|++++.|++.+++|+++.+....... ..+++ -..+.||+++.
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~ 225 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTK 225 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcE
Confidence 5555544444333333333222210000 00000 00023333344
Q ss_pred ee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 388 IK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 388 i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
|. .+.|+++|+||+++.+.+...+.+..++|++++||.++.| ||++++|+++|+|
T Consensus 226 I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 226 IDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred EccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 43 3577788888888888888888888999999999999887 9999999999875
No 73
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.62 E-value=1.1e-14 Score=133.76 Aligned_cols=212 Identities=17% Similarity=0.248 Sum_probs=137.2
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++++|++++........+.. +....
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~------- 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLSK------- 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccCC-------
Confidence 589999999999984 379999999999 99999999999976 899999998766544433311 10110
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEeec
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~~~ 166 (442)
.+.++. .. .+...+++.++..++. ...+.++++.||+ ++... +.++++.+.+.+. .+...+.
T Consensus 70 ~~~~~~--~~---------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVE--GG---------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEEC--Cc---------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 122322 11 2567889999888741 0147899999999 55544 7888888765443 3333333
Q ss_pred CCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCcc
Q 013483 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (442)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (442)
.+ +....|++|.+.++.++... ....+. ++|+.+.|.+++....... .
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~~-~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEEG-E 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhcC-C
Confidence 22 22335667888887763221 234566 9999999988876543221 1
Q ss_pred cccchhhhccc-ccceEEEEecceeeecCChHHHHH
Q 013483 247 FGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFE 281 (442)
Q Consensus 247 ~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~ 281 (442)
+..|....+.+ +.++..+..+..-+||+||+||..
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 11232222222 245666665555669999999964
No 74
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.62 E-value=5.2e-15 Score=138.69 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=96.6
Q ss_pred CCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCcc
Q 013483 297 DATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD------------TMMLGADF 362 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~------------~~~~~~~~ 362 (442)
++.+.+..++.+++.+.+.. ++.|++++.|+ .+.+ .+++||++|.|+++++|+. .+++|+++
T Consensus 8 ~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 8 EPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 33444444444444444421 35555666655 4444 4677777777777777763 56677766
Q ss_pred ccchhhhhhhhcC-CCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcE
Q 013483 363 YETDAEVASLLAE-GRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSV 435 (442)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~ 435 (442)
.+.+....+...- +..++.||++|+|. ++.|+++|.||+++.+++...+....+||++++||.++.+ ||++++
T Consensus 84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~ 163 (254)
T TIGR01852 84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAM 163 (254)
T ss_pred EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCE
Confidence 6655433322211 11138999999996 7888888999999999888888888899999999999887 889999
Q ss_pred EcCCccC
Q 013483 436 ITDGFVI 442 (442)
Q Consensus 436 v~~~~~i 442 (442)
|+++|+|
T Consensus 164 Ig~~s~V 170 (254)
T TIGR01852 164 IGGLSAV 170 (254)
T ss_pred EeeeeeE
Confidence 9998875
No 75
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.60 E-value=3.2e-14 Score=131.63 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=136.6
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCccc
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~ 85 (442)
.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+..+ .+++++|+++.... .+.+.+.+ +.+
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~------ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNV------ 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCc------
Confidence 4689999999999997 4579999999999 9999999999876 48999999975442 23333332 211
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
....++++... .+..++++.+...+.. .+.++++.||. ++..+ +.++++.+...++. +.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEE
Confidence 00113333211 2455888888887753 35678889999 66655 68888877665433 222
Q ss_pred eecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 013483 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (442)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~ 243 (442)
.+..+ .+....++.+....+ .+ ..+..-+.|.|+.+.|.++.+.....
T Consensus 133 ~~~~d-------ti~~~~~~~~~~~i~----r~---------------------~~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD-------TVKRVKDKQVIETVD----RN---------------------ELWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc-------eEEEEcCCeeEeccC----HH---------------------HHhhhcCCceeeHHHHHHHHHHHHhc
Confidence 22221 122212344433322 10 12234468999988887766532111
Q ss_pred Ccccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 244 ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 244 ~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
...+ .|....+. .+.++..++-+.....|++|+|+..|...+.
T Consensus 181 ~~~~-td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QFLG-TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCCc-CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 1222 33222222 3567888877778899999999999987764
No 76
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.60 E-value=3.4e-14 Score=139.36 Aligned_cols=208 Identities=15% Similarity=0.181 Sum_probs=135.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+.. ...
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~------~~~ 72 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP------EIK 72 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc------cCC
Confidence 567899999999999995 5689999999999 99999999999987 699999998665443333211 101
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.+.++. .. .+..++++.++..++ .+.+++..||. +++.+ +.++++..+. .++++.
T Consensus 73 ----~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 73 ----FVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ----eEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 122221 11 246788999988875 37899999998 55555 6777776543 356677
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
..+..+ ...|+....|. ..+..+ ++|... +.+.+....+
T Consensus 130 ~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f---------------------------------~~~~l~~a~~---- 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDR-EGLKLI-QTPQLS---------------------------------RTKTLKAAAD---- 168 (378)
T ss_pred EEEecc--CcEEeeeEcCc-ccEEEE-ECCCCC---------------------------------CHHHHHHHHh----
Confidence 767655 34454333332 233333 444322 1222222211
Q ss_pred CCcccccchhhhccc-ccceEEEEecceeeecCChHHHHHHhhhhhc
Q 013483 243 TANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~-~~~i~~~~~~g~~~di~t~~~~~~an~~~l~ 288 (442)
....+ .|..+.+.. +.++..++.+..|.+|++|+||..|+..+..
T Consensus 169 ~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 11122 344444333 5688888888999999999999999987653
No 77
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.59 E-value=1.2e-14 Score=130.68 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=104.0
Q ss_pred ccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh--hh
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE--VA 370 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~--~~ 370 (442)
.+++.+.+.+.+.+++++.+ +++.|.++.|+++|.|+ .+.+.+++||+++.|++++.|++.+.++++..+.... ..
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 34455555666666777777 56777777888888888 6777788888888888777777666666543322210 01
Q ss_pred hhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCccc-ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 371 SLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 371 ~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~-~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+...++ +.|++.+++++|+||++|.||+++.+.+...... ..++|+++|||.++++ ||++++|++||+|
T Consensus 103 s~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 222333 5666777778899999999999999988766554 3589999999999876 9999999999875
No 78
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.59 E-value=8.8e-15 Score=129.85 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=93.6
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||+|+||++ .||+|+|++|+ |||+|+++++..++++++++++++..+..+.++.+..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 7899999999999974 79999999999 9999999999998999999999887777777775321
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-ee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
..+.. .. ..|...++..++..+.. .++|++++||+. .. ..+.++++.+...+.....++.
T Consensus 65 -~~~~~--~~--------g~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 -KDYKN--AS--------GKGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -cEEEe--cC--------CCCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11111 11 14777888888765432 379999999993 33 4478899888766555444443
No 79
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.59 E-value=7.6e-15 Score=127.91 Aligned_cols=120 Identities=25% Similarity=0.389 Sum_probs=91.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-----~-------~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-----G-------I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-----T-------S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-----C-------c
Confidence 7999999999997 49999999999 999999999999999999999986 4455544221 1 2
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+++..... ..|++.++..+...+.. .++|++++||+ +++.+ +.++++.+.+++.++++..
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 23322211 15999999999988832 58999999999 44544 7889988887777765544
No 80
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=2.7e-14 Score=124.83 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhh
Q 013483 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (442)
Q Consensus 298 ~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 373 (442)
+...+.+.+.+++.+.+ +++.+. +++|+++|.|+ .+.+. +++||++|.|++++.|.++++..+
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------- 76 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------- 76 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-------------
Confidence 34455555666666666 455554 58899999998 77774 799999999999999988766544
Q ss_pred cCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCc------------------ccceeeCCCeEEccCcEE-----E
Q 013483 374 AEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI------------------QEADRSAEGFYIRSGVTV-----I 430 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~~v-----i 430 (442)
+.|++++.+.+|+|++++.|++++++.+...- .....++++++||.++.+ |
T Consensus 77 ------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~i 150 (163)
T cd05636 77 ------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKI 150 (163)
T ss_pred ------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEE
Confidence 89999999999999999999999999763210 123589999999999876 8
Q ss_pred cCCcEEcCCccC
Q 013483 431 LKNSVITDGFVI 442 (442)
Q Consensus 431 ~~~~~v~~~~~i 442 (442)
|++++|++|++|
T Consensus 151 g~~~~i~agsvV 162 (163)
T cd05636 151 GPGSWVYPGCVV 162 (163)
T ss_pred CCCCEECCCcEe
Confidence 999999999875
No 81
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.58 E-value=2.5e-14 Score=139.95 Aligned_cols=63 Identities=29% Similarity=0.283 Sum_probs=52.7
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.||++|.|. .+.|+++|+||+++.+.....+....++|++++||.++.| ||++++|+++|+|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 4566666666 4778888888888888888888888999999999999887 9999999999875
No 82
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.56 E-value=4.5e-14 Score=131.93 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=35.5
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
+.||+||+||.+|.+.+..++.+..+||++|.||..+.+ ||++++|++++.
T Consensus 237 vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~ 292 (338)
T COG1044 237 VQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG 292 (338)
T ss_pred eEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccc
Confidence 556666666667766666677777777777777776666 777777777664
No 83
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.56 E-value=1.6e-13 Score=126.31 Aligned_cols=218 Identities=19% Similarity=0.234 Sum_probs=134.2
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ ..+.+.+++.+ + + ..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~--~--~~-- 64 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-Y--G--AE-- 64 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-h--C--CC--
Confidence 4679999999999995 5999999999 99999999999987 78887766 34455555432 1 1 00
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~ 164 (442)
+.+....... .+ ..|+.++++.+++.++.. ....+.|+++.||. ++. ..+.++++.+...+.+.++.+.
T Consensus 65 ---~~~~~~~~~~--~~---~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 65 ---VPFLRPAELA--TD---TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred ---ceeeCChHHC--CC---CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1111111000 00 247889999988877520 00136899999999 444 4588999998877777777776
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
+..+ ...++... ++++ ...+...+... ..+ ++. ...+..+.|+|+++++.+.+..
T Consensus 136 ~~~~--~~~~~~~~-~~~~-~~~~~~~~~~~-~~~------------q~~-~~~~~~n~~~y~~~~~~~~~~~------- 190 (223)
T cd02513 136 EFHR--FPWRALGL-DDNG-LEPVNYPEDKR-TRR------------QDL-PPAYHENGAIYIAKREALLESN------- 190 (223)
T ss_pred ecCc--CcHHheee-ccCC-ceeccCccccc-CCc------------CCC-hhHeeECCEEEEEEHHHHHhcC-------
Confidence 6543 22233322 2233 22222111100 000 111 1225568899999999764310
Q ss_pred cccccchhhhcccccceEEEEecc-eeeecCChHHHHHHhhh
Q 013483 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (442)
Q Consensus 245 ~~~~~~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~ 285 (442)
. + -+.++..+..+. ..+||++++||..|...
T Consensus 191 ~-~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 S-F---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred C-c---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 0 0 145666666654 57999999999988653
No 84
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.55 E-value=4.9e-14 Score=131.66 Aligned_cols=62 Identities=31% Similarity=0.321 Sum_probs=49.3
Q ss_pred eEeCCCcEee-eeEeCCC----cEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 380 VGIGENTKIK-ECIIDKN----ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~----~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
|+||+++.|+ |+.|++. ++||++|.|-|...+..+++||+++.|..++.+ ||+++++|..+.
T Consensus 203 V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vg 274 (338)
T COG1044 203 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVG 274 (338)
T ss_pred EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECccee
Confidence 7888888888 7888888 888888888888887777788877777666554 888888887654
No 85
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.53 E-value=1.8e-13 Score=122.41 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=86.4
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceE
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v 90 (442)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++++|++++...++.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999999899999999998765544443211 11 3
Q ss_pred EEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHHHcCCcE
Q 013483 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADI 159 (442)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~~~~~~~ 159 (442)
.++..... ..|+..+++.++....+ .+.|++++||+ ++.. .+.++++.+......+
T Consensus 65 ~~v~~~~~--------~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVHNPQY--------AEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEECcCh--------hcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 33322111 14888999888762111 47899999999 4443 4778888776554433
No 86
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.49 E-value=8.4e-13 Score=118.76 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=81.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
|.+|.+||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++++|+++...+.+ .. . +
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~--~----- 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-F--G----- 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-c--C-----
Confidence 467899999999999995 269999999999 99999999998 67999999887543221 11 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
+.++...... ..|+..+++.++...+ .+.+++++||+ +++.+ +.++++.+.
T Consensus 63 ----~~~v~~~~~~-------~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 63 ----LPVIPDSLAD-------FPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred ----CcEEeCCCCC-------CCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 1122111110 1478889988887654 47899999999 55555 667776543
No 87
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.49 E-value=8.6e-13 Score=122.76 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=130.8
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
++.+.+||||||.|+||+ ...||+|++++|+ |+|+|+++.+... ++++|+||+++......+.....+ .
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~--~---- 91 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI--D---- 91 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc--C----
Confidence 445789999999999997 4579999999999 9999999999984 899999999866443332221111 1
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCC--e-eeecC-HHHHHHHHHHcCCcEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD--~-i~~~~-l~~~l~~~~~~~~~~t 160 (442)
.. +.+. ... .+..++++.++..+.. +..+|+.+| . ++... +.++++.....++ .
T Consensus 92 --~~-i~~v--~gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~ 149 (252)
T PLN02728 92 --VP-LKFA--LPG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--A 149 (252)
T ss_pred --Cc-eEEc--CCC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--E
Confidence 01 2221 111 2456788888877752 334455566 4 55544 5788877665543 4
Q ss_pred EEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 013483 161 ISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (442)
Q Consensus 161 l~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~ 240 (442)
+...+..+. +...++++.+.. .++... .+.--.-..|+.+.|.+..+..
T Consensus 150 i~~~~~~dt------ik~v~~~~~v~~---t~~R~~----------------------l~~~QTPQ~F~~~~l~~a~~~~ 198 (252)
T PLN02728 150 VLGVPVKAT------IKEANSDSFVVK---TLDRKR----------------------LWEMQTPQVIKPELLRRGFELV 198 (252)
T ss_pred EEeecchhh------EEEecCCCceee---ccChHH----------------------eEEEeCCccchHHHHHHHHHHH
Confidence 455444331 122334454433 222111 1223344567777776666553
Q ss_pred CCCCcccccchhhhcc-cccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 241 FPTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 241 ~~~~~~~~~~~l~~~i-~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
......+ .|-...+. .+.++..++-+..-+-|.+|+|+..|...+.
T Consensus 199 ~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 199 EREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 3222112 22222222 2456776655556788999999999987664
No 88
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.49 E-value=4e-13 Score=122.05 Aligned_cols=145 Identities=24% Similarity=0.243 Sum_probs=95.2
Q ss_pred cCCCCcccccCccCCCcee-cCCce-eeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec-----------------
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD----------------- 354 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i-~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~----------------- 354 (442)
+++.+.+..++.+++++.+ +++.+ .++.||++|.|+ ++.+ .+++||++|.|+++++|+.
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQ 89 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCC
Confidence 3445555556666666666 34555 357777777777 5566 3477777777777777642
Q ss_pred --eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE--
Q 013483 355 --TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-- 429 (442)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-- 429 (442)
.++++++..+............. +.||+++.|+ ++.|++++.||+++.+.+...+....+|+++++||+++.+
T Consensus 90 ~~~v~Ig~~~~Ig~~~~i~~~~~~~--~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~ 167 (205)
T cd03352 90 LGGVIIGDDVEIGANTTIDRGALGD--TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAG 167 (205)
T ss_pred cceEEECCCEEECCCCEEeccccCC--eEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeC
Confidence 34444443222211111111111 5677777776 5778888888888888888888788899999999999887
Q ss_pred ---EcCCcEEcCCccC
Q 013483 430 ---ILKNSVITDGFVI 442 (442)
Q Consensus 430 ---i~~~~~v~~~~~i 442 (442)
||++++|++++++
T Consensus 168 ~~~ig~~~~i~~~s~v 183 (205)
T cd03352 168 HLTIGDGVVIGAGSGV 183 (205)
T ss_pred CcEECCCCEEcCCCEE
Confidence 8999999998864
No 89
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.48 E-value=2.6e-13 Score=121.09 Aligned_cols=122 Identities=22% Similarity=0.357 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+.+||||||.|+||++ ||+|+|+.|+ |||+|+++.+...++++++|++++....+.+++.. ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---------CC--
Confidence 4689999999999984 9999999999 99999999999999999999998766554443321 11
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEE
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~t 160 (442)
+.++..... ..|+..+++.++..+.. ..+.+++++||+ +++.. +.++++.+...+..++
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v 124 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGIV 124 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 222221211 14899999999887752 147899999999 45444 6788887765555433
No 90
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=7.4e-12 Score=113.12 Aligned_cols=115 Identities=24% Similarity=0.303 Sum_probs=82.3
Q ss_pred ccccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 4 ~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
...+++.+||||||+|+||+ .||+|++++|+ |||+|+++.+... +++++|++++. +... .+. ..+
T Consensus 3 ~~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~-~~~-----~~~- 67 (200)
T PRK02726 3 TVKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQ-SLL-----PPG- 67 (200)
T ss_pred CcCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHH-hhc-----cCC-
Confidence 34567899999999999997 48999999999 9999999999764 68888887532 2221 111 001
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
+.++..... ..|+..+++.++..++ .+.++|++||+ ++..+ +..+++.+.
T Consensus 68 ------~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 68 ------CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ------CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223322221 1589999999998876 37899999999 55555 566776543
No 91
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=3.6e-12 Score=114.71 Aligned_cols=109 Identities=17% Similarity=0.342 Sum_probs=76.6
Q ss_pred CCcccccceEEEEEeCCCCCCCcccccCCCccceeecC-ccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccC
Q 013483 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY 79 (442)
Q Consensus 1 ~~~~~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g-~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~ 79 (442)
|.+.+.+++.+||||||+|+||+ .||+|+|+.| + |+|+|+++.+... +++++|++++ +.. . +
T Consensus 1 ~~~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~ 63 (196)
T PRK00560 1 MKNPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F 63 (196)
T ss_pred CCCccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c
Confidence 55667788999999999999996 6999999999 9 9999999999877 8899888864 111 0 0
Q ss_pred CCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecCH-HHH
Q 013483 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDF 148 (442)
Q Consensus 80 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~~ 148 (442)
. ++++...+.. ..|+..++..+....+ .+.++|++||+ ++..++ .++
T Consensus 64 ~---------~~~v~d~~~~-------~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---------APFLLEKESD-------LFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---------CcEEecCCCC-------CCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 1122211110 1366666665554444 47999999999 556554 444
No 92
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.39 E-value=8.9e-12 Score=108.77 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=92.1
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+..+.+||||||+|+||. .+|.|+|+.|+ |+++++++.+.+++.+++++|+++...+....+.. ..+
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~--- 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLG--- 69 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCC---
Confidence 457889999999999999 89999999999 99999999999999999999999873332222211 111
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-e-ecCHHHHHHHHHHc
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-Y-RMDYMDFVQNHRQS 155 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~-~~~l~~~l~~~~~~ 155 (442)
+.++.+.+. ..|.+.+++.+....... .+.++++.||+- + ...+..+++.++.+
T Consensus 70 ----~~~v~npd~--------~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 ----VTVVVNPDY--------AQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ----eEEEeCcch--------hhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 344443332 269999999999888741 258999999993 3 34578888877655
No 93
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.38 E-value=6.9e-12 Score=100.70 Aligned_cols=101 Identities=29% Similarity=0.447 Sum_probs=83.2
Q ss_pred cee-cCCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee
Q 013483 312 SKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 390 (442)
Q Consensus 312 ~~i-~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 390 (442)
+.+ +++.+.+++||++|.|+.+.+.+|++++++.|++++.|.+++++++ +.||++|.+.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~ 62 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRR 62 (104)
T ss_pred ceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEe
Confidence 445 5677788999999999978889999999999999999999988776 89999999999
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcE
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSV 435 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~ 435 (442)
|+||++|.|++++++.+...- .-..+.+...+.++|++++.
T Consensus 63 siig~~~~Ig~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~ 103 (104)
T cd04651 63 AIIDKNVVIPDGVVIGGDPEE----DRARFYVTEDGIVVVGKGMV 103 (104)
T ss_pred EEECCCCEECCCCEECCCccc----ccccceEcCCeEEEEecccC
Confidence 999999999999999874221 11245555677777877764
No 94
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.36 E-value=8.3e-12 Score=117.06 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=97.7
Q ss_pred CCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEe-------------eeEEcCCcEECCCCEEec------
Q 013483 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD------ 354 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~-------------~~~ig~~~~i~~~~~i~~------ 354 (442)
.+...+.+.+.+++.+.+ +++.+. ++.||++|+|+ ++.+. +++||++|.|++++.|..
T Consensus 20 ~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~ 99 (254)
T TIGR01852 20 GPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGG 99 (254)
T ss_pred CCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCC
Confidence 344444555555555555 445453 58888888888 66664 588999999999999874
Q ss_pred -eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---
Q 013483 355 -TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV--- 429 (442)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v--- 429 (442)
.+++|+++++.+.... ..+ +.||++|+|. ++.|+++++||+++.+++...+..+.+|+++++|+++++|
T Consensus 100 ~~~~IG~~~~I~~~~~I---~~~---~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~ 173 (254)
T TIGR01852 100 GVTRIGNNNLLMAYSHI---AHD---CVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD 173 (254)
T ss_pred CcEEECCCCEECCCCEE---ccC---CEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee
Confidence 4566766544332111 111 6777777776 6888888888888888888888889999999999999888
Q ss_pred EcCCcEEcCC
Q 013483 430 ILKNSVITDG 439 (442)
Q Consensus 430 i~~~~~v~~~ 439 (442)
|++++++.++
T Consensus 174 i~~~~~~~G~ 183 (254)
T TIGR01852 174 VPPYGLVEGN 183 (254)
T ss_pred cCCCcEEecC
Confidence 8888877654
No 95
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.35 E-value=8.5e-11 Score=107.78 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=136.9
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
|||||+|.++||. +|.++|++|+ ||+.|+++.+.+++ +++|+|.+. .+++.+...+ + +..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~-~--g~~------- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS-Y--GAS------- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH-c--CCE-------
Confidence 7999999999995 6999999999 99999999999987 577766553 3455555442 2 211
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHHHHHcCCcEEEEEeecC
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~~~~~~~~~tl~~~~~~ 167 (442)
+.+.....- . ....|+.++++.+...++.. ...+.|+++.||. +.. .++.++++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l-~----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKEL-A----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHH-c----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 111111100 0 01257889999998877421 1147899999999 444 4588999998877788777776644
Q ss_pred CCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCccc
Q 013483 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (442)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (442)
.. ..+.. ..+++|+...+....... ++ + .....+..+.++|+++++.+.+ + . ..+
T Consensus 136 ~~--~~~~~-~~~~~g~~~~~~~~~~~~--~r------------Q-d~~~~y~~nga~y~~~~~~~~~---~--~--~~~ 190 (222)
T TIGR03584 136 FP--IQRAF-KLKENGGVEMFFPEHFNT--RS------------Q-DLEEAYHDAGQFYWGKSQAWLE---S--G--PIF 190 (222)
T ss_pred CC--hHHhe-EECCCCcEEecCCCcccC--CC------------C-CCchheeeCCeEEEEEHHHHHh---c--C--Ccc
Confidence 31 12222 334567666554221110 11 1 1123356688999999997642 1 0 111
Q ss_pred ccchhhhcccccceEEEEecc-eeeecCChHHHHHHhhhh
Q 013483 248 GSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 248 ~~~~l~~~i~~~~i~~~~~~g-~~~di~t~~~~~~an~~~ 286 (442)
+.++..|..+. ..+||++++||..|...+
T Consensus 191 ----------~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 191 ----------SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ----------CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 24556666653 579999999999987644
No 96
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.35 E-value=3.9e-12 Score=113.12 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=80.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+... +++++|++++.... +. . + +
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~-~----~------ 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA-L-L----G------ 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h-c----C------
Confidence 468999999999998 39999999999 9999999999988 89999999876543 11 0 1 1
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHH
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~ 152 (442)
+.++..... ..|+..+++.++..++ .+.+++++||+ +++.+ +..+++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 122222211 2589999999988775 37999999999 55544 66777655
No 97
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=6.7e-11 Score=103.96 Aligned_cols=235 Identities=18% Similarity=0.256 Sum_probs=155.3
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (442)
++..+||+|.=.+|||. .|||-.|+|+ |||.|+.+++.++|.++++|.+. ++++.+.+.. ++
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~---~G------ 63 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVATD--DERIAEAVQA---FG------ 63 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH---hC------
Confidence 57789999999999996 7999999999 99999999999999999999984 5577777754 22
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
.+.+--.... ..||-.... +...+.- ...+-++=+.||. +++.. +.++++..+..++++.-++.
T Consensus 64 ---~~avmT~~~h-------~SGTdR~~E-v~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 ---GEAVMTSKDH-------QSGTDRLAE-VVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred ---CEEEecCCCC-------CCccHHHHH-HHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 1111111111 136544443 3333321 1246677789999 44443 67777777777666655555
Q ss_pred ecCCCc---CCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 013483 165 PMDDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (442)
Q Consensus 165 ~~~~~~---~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~ 241 (442)
+..++. .++-..+..|.+|+...|...+-+...+. . . ..+.+...|+|.|++.+|.++....
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~----------~---~~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F----------G---GTPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c----------C---CcchhheeehHHhHHHHHHHHHhcC-
Confidence 444321 12334556788899999987665432110 0 0 0246778999999999998775532
Q ss_pred CCCccccc--chhhhcccccceEEEEeccee-eecCChHHHHHHhhhhhc
Q 013483 242 PTANDFGS--EIIPASANEQFLKAYLFNDYW-EDIGTIRSFFEANLALTA 288 (442)
Q Consensus 242 ~~~~~~~~--~~l~~~i~~~~i~~~~~~g~~-~di~t~~~~~~an~~~l~ 288 (442)
+..-+..+ +-|..+-.+++|.+......- ..++|++||.++.+.+..
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 22111111 345556668899988887555 899999999999888754
No 98
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.34 E-value=1.1e-10 Score=105.93 Aligned_cols=213 Identities=18% Similarity=0.238 Sum_probs=127.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc-CCcEEEEEeccChh-hHHHHHHhhccCCCCcccC
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVTFG 86 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~~ 86 (442)
+.+||||||.|+||. ...||.+++++|+ |+|.|+++.|.+. .+++|+||+..... ...+.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 468999999999998 6789999999999 9999999999884 68999999976653 33333322 1
Q ss_pred CceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEEEe
Q 013483 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (442)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~~~ 164 (442)
.+.++.-. ..-.++++.++..+... .+.+++..|=- ++... +.++++..+.. ..+.+...
T Consensus 67 --~v~iv~GG-----------~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~ 128 (221)
T PF01128_consen 67 --KVKIVEGG-----------ATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPAL 128 (221)
T ss_dssp --TEEEEE-------------SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred --CEEEecCC-----------hhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEE
Confidence 13443211 13667888888888742 25677766666 44444 67888776552 33455555
Q ss_pred ecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 013483 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (442)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~~ 244 (442)
+..+ .+...+.++.+.+..++.. .+.--.-..|+.+.|.++.++.....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR~~-------------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~ 177 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDRSK-------------------------LWAVQTPQAFRFELLLEAYEKADEEG 177 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETGGG-------------------------EEEEEEEEEEEHHHHHHHHHTHHHHT
T ss_pred eccc------cEEEEecCCcccccCCHHH-------------------------eeeecCCCeecHHHHHHHHHHHHhcC
Confidence 5543 2334555777665543211 12233566788888877766542111
Q ss_pred cccccch--hhhcccccceEEEEecceeeecCChHHHHHHhhhh
Q 013483 245 NDFGSEI--IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (442)
Q Consensus 245 ~~~~~~~--l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~ 286 (442)
..+.+|. +..+ +.++..++-+..=+-+.+|+|+.-|...+
T Consensus 178 ~~~tDdasl~~~~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 178 FEFTDDASLVEAA--GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHHSSHHHHHHHT--TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCccCHHHHHHHc--CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2222222 2222 56677666655667888999999987765
No 99
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.33 E-value=8.7e-12 Score=105.71 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+++ .++++++++.++....++++....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 579999999999997 245999999999 999999999999 789999999999888888886532
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
++++.... .|--.=++.+.+.+. .++|++++|+ +++.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 34443111 255556777777775 5999999999 44544 566666655
No 100
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.33 E-value=1.1e-10 Score=105.40 Aligned_cols=223 Identities=17% Similarity=0.197 Sum_probs=137.2
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
++++.+||||||.|+||. ...||.+++++|+ |||.|+++.|..+. +++|+|++........+.+.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~-~------- 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK-L------- 69 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh-h-------
Confidence 356789999999999999 5899999999999 99999999998865 699999998644433322221 1
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.....++++... ..-.++++.++..+.+ ...+.|||..+=- ++..+ +.++++.. ....+.+.
T Consensus 70 ~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAIL 133 (230)
T ss_pred ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEEE
Confidence 011124444211 2467788888888873 1146777776666 44444 67777433 23344555
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
+.|..+. ....++++.+.....+..- +.----..|+.+.|.+..++.+.
T Consensus 134 alpv~DT------ik~~~~~~~i~~t~~R~~l-------------------------~~~QTPQ~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTDT------LKRVDADGNIVETVDRSGL-------------------------WAAQTPQAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccCc------EEEecCCCCeeeccChhhh-------------------------hhhhCCccccHHHHHHHHHHHHh
Confidence 6555442 2333445566554332211 11123456777777777666543
Q ss_pred CCcccccchhhhcccccceEEEEecceeeecCChHHHHHHhhhhh
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~g~~~di~t~~~~~~an~~~l 287 (442)
....+..|.--....+.++..+.-+-+-+.+-+|+|+..|+..+.
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 333332322111112566776665556788999999999987764
No 101
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.33 E-value=1.4e-11 Score=115.53 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=57.0
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCC--
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK-- 395 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~-- 395 (442)
.+.|+++++|+ .+.| .+++|+.++.||+++.|++.+.++.. ++... ..++...+.||++|.|+ +|.|..
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~----~~~~~--~~g~~~~v~IG~~~~Ig~~~~I~~~~ 96 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEA----PQDLK--YKGEPTRLEIGDNNTIREFVTIHRGT 96 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCc----cccee--ecCCCceEEECCCCEECCccEEeccc
Confidence 35556666665 4444 44555555555555555555555431 00000 00000115666666664 344432
Q ss_pred -----CcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 396 -----NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 396 -----~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.++||+++.+.....+...++||++++|+.++.+ ||++++|++++.|
T Consensus 97 ~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i 153 (254)
T cd03351 97 AQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAV 153 (254)
T ss_pred cCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceE
Confidence 2444444444444333344556666666655443 7888888877654
No 102
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=2.2e-11 Score=106.19 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=67.9
Q ss_pred eeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEeceE----------EECCccccchhhhhhhhcCCCcceEeCCC
Q 013483 321 DSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKDTM----------MLGADFYETDAEVASLLAEGRVPVGIGEN 385 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 385 (442)
++.||++|.|+ .+.+ ..++||++|.|++++.|.+++ .+|++ +.|+.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 56777777777 5555 247999999999999998764 45554 677777
Q ss_pred cEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 386 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 386 ~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+.|.+++||++|.||+++++.. ..+|++++.||+++.| .+++.|++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~------gv~Ig~~~~IgagsvV-~~~~~i~~~~ 126 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGK------NVIITDGCIIGAGCKL-PSSEILPENT 126 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECC------CCEECCCCEEeCCeEE-CCCcEECCCe
Confidence 8888899999999999998875 4566777777777444 4444444443
No 103
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.33 E-value=1.7e-11 Score=109.17 Aligned_cols=111 Identities=13% Similarity=0.268 Sum_probs=78.7
Q ss_pred cccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEec----eEEECCccccchhhhhh
Q 013483 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVAS 371 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~ 371 (442)
.+.+++.|.+.+.+.+ +++||++|.|+ .+.|. .++||++|.|+++|.|.. .++++++
T Consensus 10 ~i~~~~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~---------- 75 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN---------- 75 (192)
T ss_pred cCCCCcEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC----------
Confidence 3444555555554432 56777777777 55553 479999999999999942 3455554
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+.|+++|.|.+|+||++|.||.++++.+ ..+|++++.|++++. |.+++.|++++
T Consensus 76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~------g~~IG~~s~Vgags~-V~~~~~ip~~~ 129 (192)
T TIGR02287 76 --------GHVGHGAILHGCIVGRNALVGMNAVVMD------GAVIGENSIVAASAF-VKAGAEMPAQY 129 (192)
T ss_pred --------CEECCCCEEcCCEECCCCEECCCcccCC------CeEECCCCEEcCCCE-ECCCCEECCCe
Confidence 8999999999999999999999998865 345777777777754 35555555554
No 104
>PLN02296 carbonate dehydratase
Probab=99.32 E-value=1.5e-11 Score=114.87 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=78.3
Q ss_pred CCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEe----------ceEEECCccc
Q 013483 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK----------DTMMLGADFY 363 (442)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~----------~~~~~~~~~~ 363 (442)
.+.+...+.+.+.+.+.+ ++.||++|.|+ ++.|. +++||++|.|+++|+|. ..+++|++
T Consensus 52 ~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~-- 125 (269)
T PLN02296 52 APVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN-- 125 (269)
T ss_pred CCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC--
Confidence 344555555666555533 45666666666 44452 35899999999999996 24566776
Q ss_pred cchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 364 ETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
|.||++|.|.+|+||++|.||.++++.+ ..+|++++.|++|+.| .+++.|++++
T Consensus 126 ----------------v~IG~~avI~g~~Igd~v~IG~ga~I~~------gv~Ig~~a~IgagSvV-~~~~~I~~~~ 179 (269)
T PLN02296 126 ----------------VTIGHSAVLHGCTVEDEAFVGMGATLLD------GVVVEKHAMVAAGALV-RQNTRIPSGE 179 (269)
T ss_pred ----------------CEECCCceecCCEECCCcEECCCcEECC------CeEECCCCEECCCCEE-ecCCEeCCCe
Confidence 8999999988999999999999999875 4466777777777444 4555555544
No 105
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.32 E-value=4.5e-11 Score=117.81 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=84.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++++|++....+.+.+++. +
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~-------~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP-------G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc-------C---
Confidence 457899999999999995 379999999999 999999999986 489999877655433332211 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
+.++...... ..|+..+++.++..++ .+.+++++||+ ++..+ +.++++.+...+++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 1111111110 1478889999888775 36799999998 55555 56777655444443
No 106
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.31 E-value=1.1e-11 Score=115.60 Aligned_cols=62 Identities=15% Similarity=0.335 Sum_probs=32.6
Q ss_pred eEeCCCcEee-eeEeCC------CcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 380 VGIGENTKIK-ECIIDK------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
+.||++|.|. ++.|.. .++||+++.+.++..+...+.||++++|+.++++ ||++++|++++.
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 5555555554 344432 3444444444444444445556666666555443 666666666654
No 107
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.31 E-value=2.4e-11 Score=105.12 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=70.8
Q ss_pred eeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEec----eEEECCccccchhhhhhhhcCCCcceEeCCCcEeeee
Q 013483 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 391 (442)
++.||++|+|+ .+.+. .++||++|.|+++|.|.. .++++++ +.|++++.+.++
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~Ig~~~~i~~~ 79 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN------------------GHIGHGAILHGC 79 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC------------------CEECCCcEEECC
Confidence 56777777776 55553 488999999999999932 3455555 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
+||++|.||.++++.+ ..+|+++++|+.++.+ .+++.|+++++
T Consensus 80 ~Ig~~~~Ig~~~~I~~------g~~Ig~~~~Ig~~s~v-~~~~~i~~~~~ 122 (155)
T cd04745 80 TIGRNALVGMNAVVMD------GAVIGEESIVGAMAFV-KAGTVIPPRSL 122 (155)
T ss_pred EECCCCEECCCCEEeC------CCEECCCCEECCCCEe-CCCCEeCCCCE
Confidence 9999999999999975 3567777777777543 55555555543
No 108
>PLN02472 uncharacterized protein
Probab=99.31 E-value=1.7e-11 Score=112.89 Aligned_cols=113 Identities=16% Similarity=0.276 Sum_probs=79.7
Q ss_pred CcccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEe----------ceEEECCcccc
Q 013483 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLK----------DTMMLGADFYE 364 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~----------~~~~~~~~~~~ 364 (442)
+.+..++.+.+++.+.+ ++.||++|.|+ ++.+ ...+||++|.|+++|.|+ ..+++|++
T Consensus 60 p~i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~--- 132 (246)
T PLN02472 60 PKVAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY--- 132 (246)
T ss_pred CccCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC---
Confidence 34455555666665533 45666666666 4444 237899999999999995 24666766
Q ss_pred chhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 365 TDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
|.||++|.|.+|+||++|.||.++++.+ ...|++++.|+.++ ++.++..|++|++
T Consensus 133 ---------------v~IG~~s~L~~~~Igd~v~IG~~svI~~------gavIg~~~~Ig~gs-vV~~g~~Ip~g~~ 187 (246)
T PLN02472 133 ---------------VTIGAYSLLRSCTIEPECIIGQHSILME------GSLVETHSILEAGS-VLPPGRRIPTGEL 187 (246)
T ss_pred ---------------CEECCCcEECCeEEcCCCEECCCCEECC------CCEECCCCEECCCC-EECCCCEeCCCCE
Confidence 8999999999999999999999999976 34566666666664 3466666666553
No 109
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.30 E-value=2e-11 Score=114.74 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=6.3
Q ss_pred EcCCcEEcCCcc
Q 013483 430 ILKNSVITDGFV 441 (442)
Q Consensus 430 i~~~~~v~~~~~ 441 (442)
||++++||++++
T Consensus 144 Igd~~~Ig~~~~ 155 (262)
T PRK05289 144 VGDYAIIGGLTA 155 (262)
T ss_pred cCCcEEEeecce
Confidence 555555555544
No 110
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.30 E-value=3.7e-11 Score=105.24 Aligned_cols=111 Identities=21% Similarity=0.312 Sum_probs=75.2
Q ss_pred ccccCccCCCceecCCceeeeEEcCCCEEe-ceEEe-----eeEEcCCcEECCCCEEe----ceEEECCccccchhhhhh
Q 013483 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK----DTMMLGADFYETDAEVAS 371 (442)
Q Consensus 302 ~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~----~~~~~~~~~~~~~~~~~~ 371 (442)
+.+++.+.+.+.+.+ ++.||++|.|+ ++.+. ++.||++|.|++++.|. ..+.+|++
T Consensus 5 ig~~~~I~~~a~i~~----~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~---------- 70 (167)
T cd00710 5 IDPSAYVHPTAVVIG----DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN---------- 70 (167)
T ss_pred eCCCeEECCCCEEEe----eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC----------
Confidence 334444444444422 45566666666 44442 47888888888888883 35666665
Q ss_pred hhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE----EcCCcEEcCCcc
Q 013483 372 LLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV----ILKNSVITDGFV 441 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v----i~~~~~v~~~~~ 441 (442)
+.|+++|.|. .++||++|.||.++.+. +.+||++++||.++.| |++++.|+++++
T Consensus 71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-------~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVF-------NAKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred --------ceECCCCEEeCCEEECCCCEECCCCEEE-------CCEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 7788888876 48888888888888885 3567888888877766 667777777765
No 111
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.30 E-value=1.8e-11 Score=112.62 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=6.5
Q ss_pred EcCCcEEcCCc
Q 013483 430 ILKNSVITDGF 440 (442)
Q Consensus 430 i~~~~~v~~~~ 440 (442)
|+++++|-+|+
T Consensus 225 vp~~svv~~g~ 235 (269)
T TIGR00965 225 VPAGSVVVSGN 235 (269)
T ss_pred cCCCcEEecCC
Confidence 56666665553
No 112
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.30 E-value=4.3e-11 Score=106.47 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=79.0
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCccc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 85 (442)
+.+|.+||||||+++|| .+|+|+++.|+ ||++|+++.|....- .++|....+.+. +.. + +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----~--g--- 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----F--G--- 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----c--C---
Confidence 46899999999999999 58999999999 999999999999865 555554433221 111 1 1
Q ss_pred CCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecCH-HHHHHHHHH
Q 013483 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDFVQNHRQ 154 (442)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~~l~~~~~ 154 (442)
++++...... .|...+++.++.... .+.+++++||+ ++..++ ..+++...+
T Consensus 62 ----~~vv~D~~~~--------~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 62 ----LPVVPDELPG--------FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQ 114 (192)
T ss_pred ----CceeecCCCC--------CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcc
Confidence 2233322221 288899999988887 38999999999 556554 555555443
No 113
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.29 E-value=2.8e-11 Score=108.58 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+.+||||||+|+||+ .||.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.... .. . .
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~-~--~--- 66 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LA-D--E--- 66 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hc-C--C---
Confidence 358999999999998 48999999999 999999999888899999999987654322 111110 00 0 0
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
.+.++..... ..|++.+++.++..+.. ...+.+++++||+ ++..+ +.++++....+...
T Consensus 67 ~~~~~~~~~~--------~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 67 RIMLVCCRDA--------CEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CeEEEECCCh--------hhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 1223221111 24888999999887632 1147899999999 55555 66777765544443
No 114
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.2e-11 Score=118.29 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=45.1
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcc----------cceeeCCCeEEccCcEE------------EcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ----------EADRSAEGFYIRSGVTV------------ILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~v------------i~~~~~v 436 (442)
+.||+.+.+. +|.|+.+++||++|.+.+...=. +...||+++-||+|+.. ||++++|
T Consensus 327 ~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFi 406 (460)
T COG1207 327 ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFI 406 (460)
T ss_pred cccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEE
Confidence 6777777775 78888888888888887653111 12367788888888543 9999999
Q ss_pred cCCcc
Q 013483 437 TDGFV 441 (442)
Q Consensus 437 ~~~~~ 441 (442)
|.+|.
T Consensus 407 GSns~ 411 (460)
T COG1207 407 GSNSQ 411 (460)
T ss_pred ccCCc
Confidence 99885
No 115
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=3.7e-11 Score=104.92 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=76.6
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+++|++++.|+ .+.+ ..++||++|.|++++.|++.++++++ +.|++++.|.+|+|++++.
T Consensus 17 ~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~ 78 (163)
T cd05636 17 PVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTK 78 (163)
T ss_pred CeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCE
Confidence 35566666666 4555 46999999999999999987777776 9999999999999999999
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccC-----------------------cEEEcCCcEEcCCccC
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSG-----------------------VTVILKNSVITDGFVI 442 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------~~vi~~~~~v~~~~~i 442 (442)
|+.++.+.+ ..+.++.++++++.+..+ -++||++++||+++.|
T Consensus 79 I~~~~~i~~-siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i 144 (163)
T cd05636 79 VPHLNYVGD-SVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL 144 (163)
T ss_pred eccCCEEec-CEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE
Confidence 999888764 345555566666555220 1457777777777653
No 116
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.28 E-value=4.6e-11 Score=102.10 Aligned_cols=110 Identities=24% Similarity=0.362 Sum_probs=77.3
Q ss_pred cccccCccCCCceecCCceeeeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEec----eEEECCccccchhhhhh
Q 013483 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKD----TMMLGADFYETDAEVAS 371 (442)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~ 371 (442)
.+.+++.+.+.+.+- .+..|++++.|+ .+.+ ....||++|.|++|++|.- .+.+|++
T Consensus 13 ~i~~~a~Va~~A~vi----GdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~---------- 78 (176)
T COG0663 13 KIDPTAFVAPSATVI----GDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD---------- 78 (176)
T ss_pred CCCCceEECCCCEEE----EeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC----------
Confidence 344444444444442 266677777766 4444 4579999999999999954 6788887
Q ss_pred hhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 372 LLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 372 ~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+.|||+|.|..|.||++|.||-|+++.|+ ..||+++.||+|+.| -++..++++
T Consensus 79 --------vtIGH~aivHGc~Ig~~~lIGmgA~vldg------a~IG~~~iVgAgalV-~~~k~~p~~ 131 (176)
T COG0663 79 --------VTIGHGAVVHGCTIGDNVLIGMGATVLDG------AVIGDGSIVGAGALV-TPGKEIPGG 131 (176)
T ss_pred --------cEEcCccEEEEeEECCCcEEecCceEeCC------cEECCCcEEccCCcc-cCCcCCCCC
Confidence 99999999999999999999999999873 345666666666444 344444443
No 117
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.28 E-value=2.9e-11 Score=116.71 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=80.6
Q ss_pred cccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEec--------------------eE
Q 013483 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD--------------------TM 356 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~--------------------~~ 356 (442)
.+..++.++.++.+ .++.|. ++.||++|.|+ ++.| .+++||++|.|+++++|+. .+
T Consensus 117 ~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~v 196 (324)
T TIGR01853 117 VIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRV 196 (324)
T ss_pred EEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceE
Confidence 33333444444444 334442 56677777777 5666 4788888888888888863 25
Q ss_pred EECCccccchhh-------hhhhhcCCCcceEeCCCcEee-eeE------------eCCCcEECCCeEEccCCCccccee
Q 013483 357 MLGADFYETDAE-------VASLLAEGRVPVGIGENTKIK-ECI------------IDKNARIGKNVIIANSEGIQEADR 416 (442)
Q Consensus 357 ~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~i~-~~~------------ig~~~~ig~~~~~~~~~~~~~~~~ 416 (442)
++|++.++..-. ..+..+++ +.|++++.|. +|. |..+++||++|.++....+..+.+
T Consensus 197 vIgd~v~IGa~~~I~r~~~~~t~Ig~~---~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~ 273 (324)
T TIGR01853 197 IIEDDVEIGANTTIDRGAFDDTIIGEG---TKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLE 273 (324)
T ss_pred EECCCcEECCCCEEecCCcCcceecCC---cEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCE
Confidence 555554443321 12233333 3344444432 333 334456666777777778888889
Q ss_pred eCCCeEEccCcEE---EcCCcEEc
Q 013483 417 SAEGFYIRSGVTV---ILKNSVIT 437 (442)
Q Consensus 417 ~~~~~~i~~~~~v---i~~~~~v~ 437 (442)
||++++||.+++| |.+++++.
T Consensus 274 Ig~~~~ig~~s~V~~~v~~~~~~~ 297 (324)
T TIGR01853 274 IGDNVTIGAKSGVTKSIPPPGVYG 297 (324)
T ss_pred ECCCCEEccCCEeCCcCCCCcEEE
Confidence 9999999999888 77777663
No 118
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.28 E-value=2.7e-11 Score=103.49 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=62.2
Q ss_pred eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEee-----eeEeCCCcEECCCeEEcc
Q 013483 336 EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~~~~ 407 (442)
.++.||+++.|+++++|+. .+.+|++ +-|.+||+|. .+.||++|+||.++++
T Consensus 28 GdV~Ig~~vsIw~~aVlRgD~~~I~IG~~------------------tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-- 87 (176)
T COG0663 28 GDVRIGAGVSIWPGAVLRGDVEPIRIGAR------------------TNIQDGVVIHADPGYPVTIGDDVTIGHGAVV-- 87 (176)
T ss_pred EeEEECCCCEECCceEEEccCCceEECCC------------------ceecCCeEEecCCCCCeEECCCcEEcCccEE--
Confidence 6899999999999999965 4555554 5666666662 3555555555555555
Q ss_pred CCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 408 SEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
.. ++|+++++||.|++| ||++|+||+||.|
T Consensus 88 ----HG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV 122 (176)
T COG0663 88 ----HG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALV 122 (176)
T ss_pred ----EE-eEECCCcEEecCceEeCCcEECCCcEEccCCcc
Confidence 34 899999999999998 9999999999875
No 119
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.27 E-value=3.7e-11 Score=108.33 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=57.6
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCC------
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEG------ 410 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~------ 410 (442)
++.||+++.|+++|+|.++++ |++ +.|+++|.|.+++||++|.|++++.+.+...
T Consensus 19 ~~~IG~~~~Ig~~a~I~~s~I-G~~------------------s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s 79 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLREVAL-GDY------------------SYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPT 79 (204)
T ss_pred ccEeCCCcEECCCcEEeCCEE-CCC------------------CEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccc
Confidence 567777777777777776544 443 6777777777777777777777777764310
Q ss_pred -------------------------cccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 411 -------------------------IQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 411 -------------------------~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
......||++++||.+++| ||++++|++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v 141 (204)
T TIGR03308 80 LHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVV 141 (204)
T ss_pred ccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 1124467777777777665 6777777777653
No 120
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.27 E-value=4.7e-11 Score=107.38 Aligned_cols=118 Identities=20% Similarity=0.267 Sum_probs=79.4
Q ss_pred cCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceE
Q 013483 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (442)
.+.+++++.+ +.+.+. ++.|+++|.|+ .+.|.++.||++|.|++++.|.++++ +++ +.
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i-g~~------------------~~ 75 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVI-GNG------------------AT 75 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEE-CCC------------------CE
Confidence 3444444444 334443 58889999998 67778889999999999999987655 444 77
Q ss_pred eCCCcEee-eeEeCCCcEECCCeEEccC-----------CCcccceeeCCCeEEccCc------------EEEcCCcEEc
Q 013483 382 IGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVIT 437 (442)
Q Consensus 382 i~~~~~i~-~~~ig~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~vi~~~~~v~ 437 (442)
|++++.|. +++|+++++|++++.+.+. ..+ ....|++++.||+++ ++||++++||
T Consensus 76 Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig 154 (193)
T cd03353 76 VGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIG 154 (193)
T ss_pred ECCccEEcCccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECCCeEEc
Confidence 88888776 6777777777776655432 111 234566677776653 2478888888
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
++++|
T Consensus 155 ~~~~i 159 (193)
T cd03353 155 SNSQL 159 (193)
T ss_pred cCCEE
Confidence 77653
No 121
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.25 E-value=4.2e-11 Score=117.21 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=89.8
Q ss_pred ecCChHH-HHHHhhhhhcCC--CCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCc
Q 013483 272 DIGTIRS-FFEANLALTAHP--PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRS 344 (442)
Q Consensus 272 di~t~~~-~~~an~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~ 344 (442)
-+++|+. +.++.+.+.... .....+++.+.+.+++.++.++.+ +++.|. ++.||++|+|. ++.| .++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3455553 444444443222 123456677777777777776666 455443 46666666666 5555 456777777
Q ss_pred EECCCCEEeceEEECCccccchhhhhhhh------cCC-------CcceEeCCCcEee-eeEeC----CCcEECCCeEEc
Q 013483 345 RINANVHLKDTMMLGADFYETDAEVASLL------AEG-------RVPVGIGENTKIK-ECIID----KNARIGKNVIIA 406 (442)
Q Consensus 345 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~i~~~~~i~-~~~ig----~~~~ig~~~~~~ 406 (442)
.|+++++|++++.+|+++.+.+....... ..+ ...+.||+++.|+ ++.|. .+++||+++.+.
T Consensus 156 ~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~ 235 (343)
T PRK00892 156 RLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKID 235 (343)
T ss_pred EeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEe
Confidence 77777777666666665332221111000 000 0014445554443 33332 234444444444
Q ss_pred cCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 407 NSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+...+...++||+++.|++++.+ ||++++||.++.|
T Consensus 236 ~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i 276 (343)
T PRK00892 236 NLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGI 276 (343)
T ss_pred CCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEE
Confidence 44444455566666666655443 7777777777654
No 122
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.25 E-value=2.6e-11 Score=108.37 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=81.7
Q ss_pred eEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCc
Q 013483 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (442)
Q Consensus 9 ~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (442)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++++|++++.... +... ..+
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~----~~~------ 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA----GFG------ 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc----cCC------
Confidence 468999999999997 259999999999 999999999976 589998888654321 1111 011
Q ss_pred eEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCC
Q 013483 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGA 157 (442)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~ 157 (442)
+.++..... ...|+..+++.++..++ .+.+++++||+ ++..+ +.++++.+....+
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 118 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDA 118 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCC
Confidence 122222111 12589999999988775 37899999999 66655 5677766543333
No 123
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.24 E-value=3.2e-10 Score=105.08 Aligned_cols=115 Identities=25% Similarity=0.323 Sum_probs=77.3
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh--hhHHHHHHhhccCCCCcccCC
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~ 87 (442)
|||||+|.++||. +|+|+|++|+ ||++|+++.+.+++ +++++|+++... +.+.+++.. . +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----C-----
Confidence 7999999999994 5999999999 99999999999987 899999998664 455555432 1 1
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCcEE
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~~t 160 (442)
++++.... .+.......+....+ .+.++++.||+ ++... +.++++.++..+.+++
T Consensus 65 --v~~v~~~~----------~~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------EDVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hhHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22222111 111111222221122 47899999999 55544 7888888776555544
No 124
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.24 E-value=5.2e-11 Score=106.38 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=71.4
Q ss_pred ccCccCCCceecCCceeeeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhhhhhhhc
Q 013483 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLA 374 (442)
Q Consensus 304 ~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~ 374 (442)
+++.|.+.+.+.+ ++.||++|.|+ ++.|. .++||++|.|+++|.|+.. ++++++
T Consensus 15 ~~a~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------- 77 (196)
T PRK13627 15 PTAFVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------- 77 (196)
T ss_pred CCeEECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------
Confidence 3444444444422 45666666666 44442 2578888888888888653 455554
Q ss_pred CCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 375 EGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 375 ~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+.||++|.+.+|+||++|.||.++++.+ ..+||+++.|++|+.| -++..++++
T Consensus 78 -----~~Ig~~a~i~g~vIG~~v~IG~ga~V~~------g~~IG~~s~Vgags~V-~~~~~ip~~ 130 (196)
T PRK13627 78 -----GHIGHGAILHGCVIGRDALVGMNSVIMD------GAVIGEESIVAAMSFV-KAGFQGEKR 130 (196)
T ss_pred -----CEECCCcEEeeEEECCCCEECcCCccCC------CcEECCCCEEcCCCEE-eCCcCcCCC
Confidence 8899999999999999999999998865 3457777777777655 344444443
No 125
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.24 E-value=2e-10 Score=113.53 Aligned_cols=110 Identities=12% Similarity=0.182 Sum_probs=76.2
Q ss_pred cccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
.+.++.+||||||+|+||+ .+|+|+|+.|+ |||+|+++.+... +++++|+++..... .+.. + +
T Consensus 171 ~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~~-~----~-- 233 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYRS-F----G-- 233 (369)
T ss_pred ccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHhh-c----C--
Confidence 3466789999999999997 59999999999 9999999999864 78888877544221 1111 1 1
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHH
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~ 150 (442)
+.++..... ..|...++..+..... .+.+++++||+ +++.+ +..+++
T Consensus 234 -----v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 234 -----IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred -----CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 223322211 1477778887766554 36899999999 55555 455554
No 126
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.24 E-value=9.5e-11 Score=104.70 Aligned_cols=92 Identities=13% Similarity=0.268 Sum_probs=60.4
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee-----eeEe
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----ECII 393 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----~~~i 393 (442)
+.|++++.|. .+++||++|.|+++|+|..+ ++++.+ +.||++|.|. +|+|
T Consensus 17 a~I~~~a~I~----g~V~IG~~~~I~~~avIrgd~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~siI 74 (196)
T PRK13627 17 AFVHPSAVLI----GDVIVGAGVYIGPLASLRGDYGRLIVQAG------------------ANLQDGCIMHGYCDTDTIV 74 (196)
T ss_pred eEECCCCEEE----CceEECCCCEECCCCEEecCCccEEECCC------------------CEECCCCEEeCCCCCCCEE
Confidence 4444444443 35778888888888888654 466665 7777777773 3677
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++++.||.++++. ..+|+++++||.++++ ||++++|++||+|
T Consensus 75 g~~~~Ig~~a~i~-------g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V 121 (196)
T PRK13627 75 GENGHIGHGAILH-------GCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred CCCCEECCCcEEe-------eEEECCCCEECcCCccCCCcEECCCCEEcCCCEE
Confidence 7777777777653 2456666666666544 7788888877764
No 127
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=5.6e-11 Score=121.07 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=66.4
Q ss_pred cccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCC
Q 013483 301 PIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 377 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (442)
.+.+.+.++.++.| ..+.+.+++||++|.|+ ++.|. +++||++|.|++++.|.++++ +.+..+.. .... .+
T Consensus 282 ~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i-~~~~~i~~---~~~i-~~- 355 (446)
T PRK14353 282 VFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKL-GEGAKVNH---LTYI-GD- 355 (446)
T ss_pred EECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEE-CCCCEECC---eeEE-cC-
Confidence 33333444444444 23444567777777777 56663 677777777777776654333 22111100 0000 01
Q ss_pred cceEeCCCcEee-eeEe-------CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEc
Q 013483 378 VPVGIGENTKIK-ECII-------DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVIT 437 (442)
Q Consensus 378 ~~~~i~~~~~i~-~~~i-------g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~ 437 (442)
+.||++|.|+ ++++ .+++.||+++.++. ..++..++.||.++. ||.++.|-
T Consensus 356 --~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~------~~~i~~~~~Ig~~~~-ig~~s~v~ 414 (446)
T PRK14353 356 --ATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGS------NSALVAPVTIGDGAY-IASGSVIT 414 (446)
T ss_pred --cEEcCCcEECCceeeeccccccCCCcEECCCcEECC------CCEEeCCCEECCCCE-ECCCCEEC
Confidence 4566666665 3444 23556666666653 456777788888844 47777664
No 128
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=6.1e-11 Score=121.45 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=102.8
Q ss_pred eeecCChHHHHHHhhhh-hcCC---CCccc-----------cCCCCc-ccccCccCCCcee-cCCcee-eeEEcCCCEEe
Q 013483 270 WEDIGTIRSFFEANLAL-TAHP---PMFSF-----------YDATKP-IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT 331 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~-l~~~---~~~~~-----------~~~~~~-~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~ 331 (442)
.+.+.++++|+.+|..+ +... ..... .++... +.+.+.++.++.| +++.|. ++.||++|.|+
T Consensus 219 ~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~ 298 (481)
T PRK14358 219 AFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG 298 (481)
T ss_pred EEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC
Confidence 44567789999988766 3221 11111 112221 2445556666666 455554 47789999998
Q ss_pred -ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCC
Q 013483 332 -SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSE 409 (442)
Q Consensus 332 -~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~ 409 (442)
.+.|.+|+||++|.|+++++|.++ ++|++ +.|++++.|. +++||++|+|++++.+.+..
T Consensus 299 ~~~~i~~svI~~~~~I~~~~~i~~~-~ig~~------------------~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~ 359 (481)
T PRK14358 299 AYSVVTDSVLHEGAVIKPHSVLEGA-EVGAG------------------SDVGPFARLRPGTVLGEGVHIGNFVETKNAR 359 (481)
T ss_pred CCCEEeeeEECCCCEEeecceecCC-eEeCc------------------eEECCccEEcCCcEECCCCEECCCEEECCce
Confidence 777888999999999999999775 55555 7888888886 78888888888876654322
Q ss_pred -----Ccc-----cceeeCCCeEEccCcE------------EEcCCcEEcCCccC
Q 013483 410 -----GIQ-----EADRSAEGFYIRSGVT------------VILKNSVITDGFVI 442 (442)
Q Consensus 410 -----~~~-----~~~~~~~~~~i~~~~~------------vi~~~~~v~~~~~i 442 (442)
.+. ...+||+++.||.++. +||++++||++|+|
T Consensus 360 i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 360 LDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred ecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 111 2357778888777753 37888888888754
No 129
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=5e-11 Score=103.94 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEeeee-----------EeCCCcEECC
Q 013483 336 EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC-----------IIDKNARIGK 401 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~-----------~ig~~~~ig~ 401 (442)
.++.||++|.|++++.|.. .+.+|++ +.|+++|+|.++ .||+++.|+.
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~ 77 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGEN------------------NIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEV 77 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCC------------------CEECCCcEEecCCCCCCCCCCCeEECCCCEECC
Confidence 3677888888888887753 3666765 777777777643 3444444444
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++.+. +.+||++++||.+++| ||+++.||+|++|
T Consensus 78 ~~~i~-------~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV 116 (164)
T cd04646 78 GCKCE-------ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKL 116 (164)
T ss_pred CcEEE-------eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEE
Confidence 44443 2667777777777665 7777777777754
No 130
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.23 E-value=1.3e-10 Score=100.33 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=70.3
Q ss_pred eeEEcCCCEEe-ceEEee----eEEcCCcEECCCCEEece----EEECCccccchhhhhhhhcCCCcceEeCCCcEeeee
Q 013483 321 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~~----~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 391 (442)
++.||++|.|+ ++.|.. ++||++|.|+++|.|... +++|++ +.|+++|.+.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 56777777777 555533 599999999999999864 667766 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+||++|.|+.++.+.+ ..+++++++++.++.+ .++..|++++
T Consensus 80 ~Ig~~~~Ig~~~~i~~------~~~Ig~~~~vg~~~~v-~~g~~i~~~~ 121 (154)
T cd04650 80 KVGNYVIVGMGAILLN------GAKIGDHVIIGAGAVV-TPGKEIPDYS 121 (154)
T ss_pred EECCCCEEcCCCEEeC------CCEECCCCEECCCCEE-CCCcEeCCCC
Confidence 9999999999998865 3457777777776544 3444444433
No 131
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.23 E-value=1.8e-10 Score=99.46 Aligned_cols=95 Identities=24% Similarity=0.400 Sum_probs=73.0
Q ss_pred eeEEcCCCEEe-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhhhhhhhcCCCcceEeCCCcEeeee
Q 013483 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 391 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~----~~~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 391 (442)
++.++++|.|+ .+.|. .++||++|.|++++.|.++ ++++++ +.|+.+|.|.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 57778888877 55563 3699999999999999885 677776 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 392 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 392 ~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+||++|.|++++.+.. ..+++++++|+.++.+ .+++.+++++
T Consensus 79 ~Ig~~~~Ig~~~~v~~------~~~ig~~~~ig~~~~v-~~~~~i~~~~ 120 (153)
T cd04645 79 TIGDNCLIGMGAIILD------GAVIGKGSIVAAGSLV-PPGKVIPPGS 120 (153)
T ss_pred EECCCCEECCCCEEcC------CCEECCCCEECCCCEE-CCCCEeCCCC
Confidence 9999999999999874 3467777777777544 4555555443
No 132
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.21 E-value=9.8e-11 Score=108.80 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=57.4
Q ss_pred CcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCC
Q 013483 300 KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 300 ~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
.++.+.+.++.++.| +++.+.+++++.++.|+ ++.| .++.||++|.||+++.|..++.+++.. ....
T Consensus 104 ~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~----------~~~~ 173 (272)
T PRK11830 104 VRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL----------EPLQ 173 (272)
T ss_pred cEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc----------cccC
Confidence 344444444444444 33333334444444444 2222 234445445555555554444444310 0001
Q ss_pred CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEEcCCc
Q 013483 377 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVITDGF 440 (442)
Q Consensus 377 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v~~~~ 440 (442)
..|+.||++|.|+ +|.|.++++||++++++....+.....|.+++ .|.++ |.++++|-+|+
T Consensus 174 ~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g~vp~~svvv~g~ 238 (272)
T PRK11830 174 ANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYGRVPAGSVVVPGS 238 (272)
T ss_pred cCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEeeecCCCcEEecCc
Confidence 1125666666665 55555555555555555544333333333321 23333 66666665553
No 133
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.21 E-value=6.2e-11 Score=120.95 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=77.6
Q ss_pred ccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 304 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 304 ~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+.+.++..+.+ +++.|. +++||++|.|+ .+.+.+++||++|.|++++.|.++++ |++ +
T Consensus 260 ~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~i-g~~------------------~ 320 (451)
T TIGR01173 260 GTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI-GEG------------------C 320 (451)
T ss_pred CccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccc-cCC------------------c
Confidence 33444555555 345554 47788888888 66667888888888888888877544 443 6
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEccC-----------CCcccceeeCCCeEEccCc------------EEEcCCcEE
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIANS-----------EGIQEADRSAEGFYIRSGV------------TVILKNSVI 436 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~------------~vi~~~~~v 436 (442)
.||+++.|. +++||++|+||+++.+.+. ..+ ..+.||++++||.++ ++||++++|
T Consensus 321 ~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 399 (451)
T TIGR01173 321 DVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFI 399 (451)
T ss_pred EECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEE
Confidence 777777776 4677766666665544321 111 135777888887764 347888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|.+++|
T Consensus 400 g~~~~i 405 (451)
T TIGR01173 400 GSNTQL 405 (451)
T ss_pred CCCCEE
Confidence 888753
No 134
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.21 E-value=9.2e-11 Score=104.45 Aligned_cols=82 Identities=16% Similarity=0.340 Sum_probs=55.8
Q ss_pred eeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEe-----eeeEeCCCcEECCCeEEcc
Q 013483 336 EHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-----~~~~ig~~~~ig~~~~~~~ 407 (442)
.+++||++|.|+++|+|.. .+++|++ +.||++|+| .+|+|+++|+|+.++++.+
T Consensus 25 G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~ 86 (192)
T TIGR02287 25 GDVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG 86 (192)
T ss_pred eeEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeECCCCEECCCCEEcC
Confidence 3678888888888888864 4666765 788888887 3577777777777777653
Q ss_pred CCCcccceeeCCCeEEccCcE-----EEcCCcEEcCCccC
Q 013483 408 SEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 442 (442)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~-----vi~~~~~v~~~~~i 442 (442)
++|+++++||.+++ +||+++.|++|+.|
T Consensus 87 -------siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V 119 (192)
T TIGR02287 87 -------CIVGRNALVGMNAVVMDGAVIGENSIVAASAFV 119 (192)
T ss_pred -------CEECCCCEECCCcccCCCeEECCCCEEcCCCEE
Confidence 34555555554433 36777777777653
No 135
>PLN02296 carbonate dehydratase
Probab=99.21 E-value=9e-11 Score=109.62 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=60.8
Q ss_pred eeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee-----------eeEeCCCcEECC
Q 013483 336 EHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-----------ECIIDKNARIGK 401 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-----------~~~ig~~~~ig~ 401 (442)
.++.||++|.|+++|+|... +.+|++ +.|+++|+|. +|+||++|.||.
T Consensus 69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~ 130 (269)
T PLN02296 69 GDVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGH 130 (269)
T ss_pred cceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECC
Confidence 36788888888888888764 477776 7888888884 578888888888
Q ss_pred CeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 402 NVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++++.+ ++|+++++||.+++| ||++++|++||+|
T Consensus 131 ~avI~g-------~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV 169 (269)
T PLN02296 131 SAVLHG-------CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALV 169 (269)
T ss_pred CceecC-------CEECCCcEECCCcEECCCeEECCCCEECCCCEE
Confidence 887732 456666666666554 7888888887764
No 136
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=1.4e-10 Score=88.72 Aligned_cols=65 Identities=22% Similarity=0.495 Sum_probs=42.8
Q ss_pred EcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCC
Q 013483 324 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402 (442)
Q Consensus 324 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~ 402 (442)
|+++++|+ .+.+.++.||++|.|++++.|+++++..+ +.|+++|.|.+|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 34445554 34445677777777777777777655544 67777777777777777777777
Q ss_pred eEEcc
Q 013483 403 VIIAN 407 (442)
Q Consensus 403 ~~~~~ 407 (442)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 77753
No 137
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.19 E-value=1.5e-10 Score=100.22 Aligned_cols=96 Identities=16% Similarity=0.308 Sum_probs=56.5
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEec---eEEECCccccchhhhhhhhcCCCcceEeCCCcEe-----eeeEe
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECII 393 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-----~~~~i 393 (442)
+.|.++++|.. ++.||++|.|++++.|.+ .+.+|++ +.|+++|+| .+|+|
T Consensus 7 ~~i~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~~I 64 (155)
T cd04745 7 SFVHPTAVLIG----DVIIGKNCYIGPHASLRGDFGRIVIRDG------------------ANVQDNCVIHGFPGQDTVL 64 (155)
T ss_pred eEECCCCEEEc----cEEECCCCEECCCcEEeCCCCcEEECCC------------------CEECCCCEEeecCCCCeEE
Confidence 44444444442 567777777777777765 3666765 777777777 45777
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
+++|.|+.++++.+ ..+.+.+.|+.++.|+.+ .+||++++|+++++
T Consensus 65 g~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~ 110 (155)
T cd04745 65 EENGHIGHGAILHG-CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAF 110 (155)
T ss_pred cCCCEECCCcEEEC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCE
Confidence 77777777776643 223333333333333333 22566666666654
No 138
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.19 E-value=2.1e-10 Score=97.31 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=32.7
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNS 434 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~ 434 (442)
+.|+++|.|+ ++.|.+++.||++++++....+.+..+|+++ |+|+.| +.++|
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~ 131 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGS 131 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCC
Confidence 5666666665 5666666666666666665555566666666 677666 55553
No 139
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.19 E-value=1.9e-10 Score=104.42 Aligned_cols=63 Identities=30% Similarity=0.340 Sum_probs=33.5
Q ss_pred eEeCCCcEee-eeEeC----CCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIID----KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig----~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.|++++.|+ ++++. .++.||+++.+.+...+....+++++++|+.++.+ ||++++|+++++|
T Consensus 93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v 165 (205)
T cd03352 93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGI 165 (205)
T ss_pred EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEE
Confidence 4555555553 33332 23344444444443333345556666666555444 7888888887764
No 140
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.18 E-value=1.2e-10 Score=118.85 Aligned_cols=120 Identities=20% Similarity=0.311 Sum_probs=85.1
Q ss_pred ccCccCCCceec-CCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 304 TSRRNLPPSKID-DSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 304 ~~~~~~~~~~i~-~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
+.+.+++++.+. .+.+. ++.||++|.|+ ++.|.+++||++|.|++++.|.++++..+ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 344555555552 23332 58899999998 78888999999999999999977766444 8
Q ss_pred EeCCCcEee-eeEeCCCcEECCCeEEccCC-----Cc-----ccceeeCCCeEEccCc------------EEEcCCcEEc
Q 013483 381 GIGENTKIK-ECIIDKNARIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGV------------TVILKNSVIT 437 (442)
Q Consensus 381 ~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~------------~vi~~~~~v~ 437 (442)
.||++|.|. +++||++|+||+++.+.+.. .+ -.+.++++++.||+++ ++||+++++|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig 408 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIG 408 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEc
Confidence 888888886 78888888888876554321 11 1235777888887774 2478888888
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
+++.|
T Consensus 409 ~~~~i 413 (456)
T PRK14356 409 SNTAL 413 (456)
T ss_pred CCCEE
Confidence 87753
No 141
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.17 E-value=1.8e-10 Score=106.05 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=66.8
Q ss_pred cCccCCCceecCCceeeeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeC
Q 013483 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (442)
Q Consensus 305 ~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 383 (442)
++++.|++.+.. +++|+++++|.+..+ .++.||++|.|.+++.|++++.+|++ |.|+
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~ 157 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 157 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEc
Confidence 344555555422 466777777764444 35778888888888888888888877 6777
Q ss_pred CCcEe---------eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 384 ENTKI---------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 384 ~~~~i---------~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
.++.| .+++||++|.||++++|.+...+.+...|+.+++|+.++.|
T Consensus 158 ~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I 212 (269)
T TIGR00965 158 GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKI 212 (269)
T ss_pred CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEE
Confidence 77766 34788888888888888765444444444445555444443
No 142
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.16 E-value=2.5e-10 Score=94.99 Aligned_cols=28 Identities=7% Similarity=0.211 Sum_probs=17.7
Q ss_pred eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
..||+++|||.+++| ||++++||+|++|
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV 104 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYV 104 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEE
Confidence 566666666666655 6666666666653
No 143
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.15 E-value=1.4e-10 Score=106.39 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=26.7
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
.+.||+++.|++++.|+..+.+|++ +.|++++.|. +|+||++|.||+++++.
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~ 150 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEG------------------TMIDMNAVLGGRATVGKNVHIGAGAVLA 150 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCC------------------CEEccccccCCCcEECCCcEEcCCcEEc
Confidence 3455555555555555554555544 4555555553 45555555555555554
No 144
>PLN02472 uncharacterized protein
Probab=99.14 E-value=3.6e-10 Score=104.22 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=65.7
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEee--------
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 389 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------- 389 (442)
++.|.+++.+. .++.||+++.|+++++|... +.+|.+ +.|+++|+|.
T Consensus 65 ~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 34555555544 36889999999999988664 778876 8899999883
Q ss_pred ---eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 390 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 390 ---~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+++||++|+||.++++.+ ++|+++++||.+++| ||++++|++|++|
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV 176 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-------CTIEPECIIGQHSILMEGSLVETHSILEAGSVL 176 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-------eEEcCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 588888888888888742 355555555555443 6777777777653
No 145
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.14 E-value=5.8e-10 Score=94.63 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=52.3
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee---------e
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------E 390 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~---------~ 390 (442)
+.|++++.|. .+.+ .++.||+++.|++++.|++++.+|++ |.|++++.|+ +
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~igg~~~~~~~~~ 75 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKN------------------VHLSAGAVIGGVLEPLQATP 75 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCC------------------CEECCCCEECCcccccccCC
Confidence 3344444444 2233 24556666666666666666666655 6666666664 3
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
++|+++|.|++++++.... +|++++.|+++++| |+++ |+|++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv------~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~ 122 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGV------IVGKGAVLAAGVVLTQSTPIYDR---ETGEI 122 (139)
T ss_pred eEECCCCEECCCCEECCCC------EECCCCEEcCCCEEcCCeEeccc---CcccE
Confidence 6777777777777776543 44444444444443 4554 55554
No 146
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.14 E-value=5.5e-10 Score=100.68 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=33.4
Q ss_pred cCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEec
Q 013483 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~ 354 (442)
+++.+.+. .+.+++++.| .++.+.++.||+++.|+ .+.+.+++||++|.|++++.|..
T Consensus 11 I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 11 LHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred ECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 33444442 2445555555 44555566666666666 55556666666666666666654
No 147
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.13 E-value=3.5e-10 Score=86.42 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=65.6
Q ss_pred CCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCc
Q 013483 309 LPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT 386 (442)
Q Consensus 309 ~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 386 (442)
++++.+ +++.+.++.|+++|.|+ .+.+.+++|++++.|++++.|.++++..+ +.|++++
T Consensus 3 g~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~ 63 (81)
T cd04652 3 GENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKC 63 (81)
T ss_pred cCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCC
Confidence 445555 45566678899999998 78888999999999999999999888766 9999999
Q ss_pred EeeeeEeCCCcEECCCe
Q 013483 387 KIKECIIDKNARIGKNV 403 (442)
Q Consensus 387 ~i~~~~ig~~~~ig~~~ 403 (442)
.+.+|+||++++|++++
T Consensus 64 ~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 64 KLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEccCEECCCcEeCCCC
Confidence 99999999999999875
No 148
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=2.4e-10 Score=116.74 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=81.3
Q ss_pred cCccCCCcee-cCCcee-eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceE
Q 013483 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (442)
Q Consensus 305 ~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (442)
.+.++.++.| +++.|. ++.||++|.|+ .+.|.+|+||++|.|++++.|+++ ++|++ +.
T Consensus 265 ~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~-~ig~~------------------~~ 325 (456)
T PRK09451 265 TLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDA-NLGAA------------------CT 325 (456)
T ss_pred cEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCC-ccCCC------------------cE
Confidence 3445556666 455554 58899999998 777788999999999999999865 44554 66
Q ss_pred eCCCcEee-eeEeCCCcEECCCeEEcc-----------CCCcccceeeCCCeEEccCc------------EEEcCCcEEc
Q 013483 382 IGENTKIK-ECIIDKNARIGKNVIIAN-----------SEGIQEADRSAEGFYIRSGV------------TVILKNSVIT 437 (442)
Q Consensus 382 i~~~~~i~-~~~ig~~~~ig~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~------------~vi~~~~~v~ 437 (442)
||+++.|. +++|+++++||+++.+.+ ...+ +.+.||++++||+++ ++||++++||
T Consensus 326 Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig 404 (456)
T PRK09451 326 IGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVG 404 (456)
T ss_pred ecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEEC
Confidence 66666665 566666666665544432 1111 235788888888875 3489999999
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
.+++|
T Consensus 405 ~~~~i 409 (456)
T PRK09451 405 SDTQL 409 (456)
T ss_pred CCCEE
Confidence 88764
No 149
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.11 E-value=6.7e-10 Score=98.47 Aligned_cols=130 Identities=20% Similarity=0.172 Sum_probs=81.3
Q ss_pred cccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCC
Q 013483 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 301 ~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
.+++++.|++++.+ +++.|. -|+|+++++|+ .+.+ .+++|-..++||.++.|.+...+|. .++-.+....++
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~----~pQdlKykge~T 80 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGE----DPQDLKYKGEPT 80 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCC----CCcccccCCCce
Confidence 34555555555555 344443 27777777777 5555 5677777788888888888888876 355555555555
Q ss_pred CcceEeCCCcEee--------------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEc
Q 013483 377 RVPVGIGENTKIK--------------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVIT 437 (442)
Q Consensus 377 ~~~~~i~~~~~i~--------------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~ 437 (442)
+ +.||++|.|. -+.||+|+.+=+++-++ -.|+||+++.+--++++ ||+.+++|
T Consensus 81 ~--l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVA------HDC~iGn~~ilaNnatLAGHV~igD~aiiG 152 (260)
T COG1043 81 R--LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVA------HDCVIGNNCILANNATLAGHVEVGDYAIIG 152 (260)
T ss_pred E--EEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeee------ccceecCcEEEecCCeEeccEEECCEEEEc
Confidence 5 8999999992 24444444444444444 34455555555555444 78888888
Q ss_pred CCccC
Q 013483 438 DGFVI 442 (442)
Q Consensus 438 ~~~~i 442 (442)
.+|-|
T Consensus 153 G~saV 157 (260)
T COG1043 153 GLSAV 157 (260)
T ss_pred CcceE
Confidence 87743
No 150
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.10 E-value=1.2e-09 Score=106.09 Aligned_cols=109 Identities=10% Similarity=0.127 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCC
Q 013483 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (442)
Q Consensus 8 ~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (442)
.+.+||||||+|+||+ .+|+|+|+.|+ ||++|+++.|... +++++|+++... ... +.. ..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~---~~~----~~~-~~----- 219 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ---WQG----TPL-EN----- 219 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH---hhh----ccc-cC-----
Confidence 6789999999999997 69999999999 9999999888765 788888875321 111 000 00
Q ss_pred ceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHH
Q 013483 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (442)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~ 152 (442)
+.++..... ..|...+|+.++..... +.+++++||+ ++..+ +..+++.+
T Consensus 220 --v~~I~D~~~--------~~GPlagI~aaL~~~~~------~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 220 --LPTLPDRGE--------SVGPISGILTALQSYPG------VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred --CeEEeCCCC--------CCChHHHHHHHHHhCCC------CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 222222221 25899999999887652 5789999999 55555 56666654
No 151
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=3.8e-10 Score=115.97 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=36.5
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEE-----ccCCCcc-----cceeeCCCeEEccCc------------EEEcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVII-----ANSEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~-----~~~~~~~-----~~~~~~~~~~i~~~~------------~vi~~~~~v 436 (442)
+.||++|.+. +++||+++.||.++.+ +....++ ...+||++++||.++ ++||+++.|
T Consensus 329 ~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~i 408 (482)
T PRK14352 329 ATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRT 408 (482)
T ss_pred CEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEE
Confidence 5566666664 5666666655543322 2111111 234677888888775 347888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|.+++|
T Consensus 409 G~~~~i 414 (482)
T PRK14352 409 GSDTMF 414 (482)
T ss_pred CCCCEE
Confidence 887764
No 152
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.09 E-value=1.6e-09 Score=97.87 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=48.8
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcE
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 398 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ 398 (442)
+.|++++.|+ ++.| .+++||++|.|++++.|++.+.+|++ +.|+.++.|. ++.|+++|.
T Consensus 100 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ 161 (201)
T TIGR03570 100 ASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY------------------VHIAPGVTLSGGVVIGEGVF 161 (201)
T ss_pred CEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC------------------CEECCCCEEeCCcEECCCCE
Confidence 3344444444 3333 24666666666666666655555554 5666666665 566666666
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||.++++. +...++++++|++++++
T Consensus 162 ig~~~~v~------~~~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 162 IGAGATII------QGVTIGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEEe------CCCEECCCCEECCCCEE
Confidence 66666554 34566777777777665
No 153
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.09 E-value=1.5e-09 Score=95.12 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=83.0
Q ss_pred ccCCCCcccccCccCCCcee-cCCcee-----eeEEcCCCEEe-ceEEe-----eeEEcCCcEECCCCEEeceEEECCcc
Q 013483 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADF 362 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-~~~~i~-----~~~i~~~~~i~-~~~i~-----~~~ig~~~~i~~~~~i~~~~~~~~~~ 362 (442)
.+++.+.+..++.++..+.| +++.+. ++.||++|.|+ .+.+. .+.||+++.|++++.|..++.+|++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~- 88 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN- 88 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-
Confidence 45566666666777777777 455553 37899999998 66662 5889999999999999998899987
Q ss_pred ccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccC
Q 013483 363 YETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 426 (442)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 426 (442)
+.||.+|.|.++.||++|.||+++.+.+ ..++++..++++
T Consensus 89 -----------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-------~~i~~~~~v~~~ 128 (167)
T cd00710 89 -----------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG-------VEIPPGRYVPAG 128 (167)
T ss_pred -----------------CEECCCCEEECCEECCCCEEcCCCEEeC-------CEeCCCCEECCC
Confidence 9999999999999999999999998842 244555555444
No 154
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=5e-10 Score=114.18 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=62.4
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhh-hhhhhcCCCcceEeCCCcEee-eeEeCCCc
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAE-VASLLAEGRVPVGIGENTKIK-ECIIDKNA 397 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~ 397 (442)
+.||+++.|+ ++.| .++.||++|.|+++++|.++ ++|+++++.... ..+...++ +.||+++.|. +++||++|
T Consensus 256 ~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s-~Ig~~~~I~~~~v~~sii~~~---~~ig~~~~i~~~~~ig~~~ 331 (448)
T PRK14357 256 VEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDC-EIGNNVKIIRSECEKSVIEDD---VSVGPFSRLREGTVLKKSV 331 (448)
T ss_pred eEECCCcEEcCCcEEEeeeEECCCcEECCCceeccc-EECCCCEEeeeEEEEEEEeCC---cEECCCcEECCcccccCCc
Confidence 3444444444 3333 34555555555555555442 333333332110 01111111 6777777775 57888888
Q ss_pred EECCCeEEccC-----CCcc-----cceeeCCCeEEccCc------------EEEcCCcEEcCCccC
Q 013483 398 RIGKNVIIANS-----EGIQ-----EADRSAEGFYIRSGV------------TVILKNSVITDGFVI 442 (442)
Q Consensus 398 ~ig~~~~~~~~-----~~~~-----~~~~~~~~~~i~~~~------------~vi~~~~~v~~~~~i 442 (442)
+||+++.+.+. ..+. ...+||++++||+|+ ++||++++||++++|
T Consensus 332 ~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i 398 (448)
T PRK14357 332 KIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSL 398 (448)
T ss_pred EecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEE
Confidence 88877655331 1111 134788888888764 347888888887653
No 155
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07 E-value=2.2e-09 Score=93.45 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=62.0
Q ss_pred eEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEeceE------------EECCccccchhhhhhhhcCCCcceEeCC
Q 013483 322 SIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKDTM------------MLGADFYETDAEVASLLAEGRVPVGIGE 384 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (442)
..+++++.|. ++.+ ..++||++|.|++++.|.++. .+|++ +.|++
T Consensus 22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~ 83 (161)
T cd03359 22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGE 83 (161)
T ss_pred EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECC
Confidence 3444444444 3333 247899999999999998653 44444 78888
Q ss_pred CcEeeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 385 NTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 385 ~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
+|.+.++.|++++.||++++++.. .+++++++|++++.| ++++.|++++
T Consensus 84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~------~~I~~~~~i~~g~~V-~~~~~i~~~~ 132 (161)
T cd03359 84 NCVVNAAQIGSYVHIGKNCVIGRR------CIIKDCVKILDGTVV-PPDTVIPPYS 132 (161)
T ss_pred CCEEEeeEEcCCcEECCCCEEcCC------CEECCCcEECCCCEE-CCCCEeCCCC
Confidence 888888889999999999888763 455555555555332 4444444443
No 156
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.06 E-value=1.1e-09 Score=112.01 Aligned_cols=138 Identities=20% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh-h-h--
Q 013483 297 DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE-V-A-- 370 (442)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~-~-- 370 (442)
.+...+.+.+.++..+.| .++.|.+++|+++|+|+ .+.+.+++||+++.|++++.+.+.+.++++..+.+.. . .
T Consensus 278 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 278 YPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred eCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 334445555566666666 56677788899999988 6677788888888877666665544444433332211 0 0
Q ss_pred ---------hhhcCCCcceEeCCCcEee-eeEeC-------CCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---E
Q 013483 371 ---------SLLAEGRVPVGIGENTKIK-ECIID-------KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---I 430 (442)
Q Consensus 371 ---------~~~~~~~~~~~i~~~~~i~-~~~ig-------~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i 430 (442)
.....+ +.||++|.|+ ++++. ..+.||++|.++....+....+||++++|++|+.| |
T Consensus 358 ig~~~~~~~~~~ig~---~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v 434 (459)
T PRK14355 358 MGEGSKASHLTYLGD---ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDV 434 (459)
T ss_pred ECCCceeeeeccccC---CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccC
Confidence 011112 6888888886 45542 34667777777766666677899999999999887 6
Q ss_pred cCCcEEc
Q 013483 431 LKNSVIT 437 (442)
Q Consensus 431 ~~~~~v~ 437 (442)
.+++.+.
T Consensus 435 ~~~~~~~ 441 (459)
T PRK14355 435 PPDSLAI 441 (459)
T ss_pred CCCcEEE
Confidence 6666554
No 157
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=9.3e-10 Score=83.63 Aligned_cols=65 Identities=35% Similarity=0.589 Sum_probs=49.9
Q ss_pred EcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCC
Q 013483 324 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 402 (442)
Q Consensus 324 i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~ 402 (442)
|++++.|+ .+.+.+++||++|.|++++.|+++++..+ +.|+++|.|.+|+|+++|.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 45555555 45555688888888888888888777665 78888888888888888888888
Q ss_pred eEEcc
Q 013483 403 VIIAN 407 (442)
Q Consensus 403 ~~~~~ 407 (442)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 87764
No 158
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.05 E-value=1.9e-09 Score=93.01 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=59.6
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-----eEe
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CII 393 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-----~~i 393 (442)
++|+++|+|.+ ++.||+++.|+++++|..+ +++|++ +.|+++|.|.+ ++|
T Consensus 6 ~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~I 63 (153)
T cd04645 6 AFIAPNATVIG----DVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTII 63 (153)
T ss_pred eEECCCCEEEE----eEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeEE
Confidence 45555555542 5778888888888877654 466665 77777777765 578
Q ss_pred CCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 394 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 394 g~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
|++|.|+.++++.+ ..++++++|+.++.+ |++++.|+++++
T Consensus 64 g~~~~I~~~~~i~~-------~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~ 109 (153)
T cd04645 64 GDNVTVGHGAVLHG-------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSL 109 (153)
T ss_pred cCCcEECCCcEEee-------eEECCCCEECCCCEEcCCCEECCCCEECCCCE
Confidence 88888888777753 345555555554443 567777766654
No 159
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.05 E-value=9.6e-10 Score=112.16 Aligned_cols=63 Identities=30% Similarity=0.307 Sum_probs=43.9
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCC----------cccceeeCCCeEEccCcE------------EEcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEG----------IQEADRSAEGFYIRSGVT------------VILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~------------vi~~~~~v 436 (442)
+.|+++|.|. +|+||++|.||+++.+.+... .-.+..|++++.||.++. +||++++|
T Consensus 320 ~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~i 399 (450)
T PRK14360 320 VKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKT 399 (450)
T ss_pred cEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEe
Confidence 7888888886 688888888888877754210 112346788888887743 47888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|++++|
T Consensus 400 G~~~~i 405 (450)
T PRK14360 400 GANSVL 405 (450)
T ss_pred CCCCEE
Confidence 888754
No 160
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.7e-10 Score=112.56 Aligned_cols=100 Identities=26% Similarity=0.434 Sum_probs=72.1
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+.+-++++++. .+.+ .+++||.++.||.|+.|.|+++ |++ |.||+||.|.+|.|++||+
T Consensus 315 ~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI-G~~------------------c~IgsN~~I~~S~iw~~v~ 375 (673)
T KOG1461|consen 315 NIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI-GAN------------------CRIGSNVRIKNSFIWNNVT 375 (673)
T ss_pred ccccCccceehhhccccceEEecccccccCCCeeeccee-cCC------------------CEecCceEEeeeeeecCcE
Confidence 35556677766 4444 5889999999999999999977 655 9999999999999999999
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCcc
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 441 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~~ 441 (442)
||.||.|.+ ..+.+..+|++|+.+..| .|||-+++||++.+
T Consensus 376 Igdnc~I~~-aii~d~v~i~~~~~l~~g-~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 376 IGDNCRIDH-AIICDDVKIGEGAILKPG-SVLGFGVVVGRNFV 416 (673)
T ss_pred ECCCceEee-eEeecCcEeCCCcccCCC-cEEeeeeEeCCCcc
Confidence 999999963 333333344444444444 23566666666554
No 161
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.04 E-value=1.9e-09 Score=92.99 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=48.3
Q ss_pred eeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-----eEeCCCcEECCCeEEccC
Q 013483 337 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIANS 408 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~~~~~ 408 (442)
+++||++|.|++++.|..+ +++|++ +.|+++|.|.. ++||+++.|+.++.+.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKY------------------SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG- 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCC------------------CEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-
Confidence 5667777777777777665 566655 67777777753 66777777777766643
Q ss_pred CCcccceeeCCCeEEccCcEE-----EcCCcEEcCCcc
Q 013483 409 EGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFV 441 (442)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~ 441 (442)
.+++++++|+.++.+ ||+++.|++++.
T Consensus 79 ------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~ 110 (154)
T cd04650 79 ------AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAV 110 (154)
T ss_pred ------cEECCCCEEcCCCEEeCCCEECCCCEECCCCE
Confidence 234444444444332 566666666654
No 162
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.03 E-value=5.7e-09 Score=100.50 Aligned_cols=217 Identities=18% Similarity=0.257 Sum_probs=125.3
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec---CccceehhhhhhhhhcC-----------CcEEEEEec-cChhhHH
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG-----------INKVYILTQ-YNSASLN 70 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~g-----------i~~i~iv~~-~~~~~i~ 70 (442)
..++.+||||||+||||. ...||+|+|++ |+ |++++.++++.+.+ .-.++|.++ +.++.+.
T Consensus 13 ~~~va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 13 EGKVAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred cCCEEEEEECCCcccccC---CCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 468999999999999994 88899999998 68 99999999998842 235567777 6677889
Q ss_pred HHHHhhccCCCC---ccc-CCceEEEeccccc----CCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCee
Q 013483 71 RHLARAYNYGSG---VTF-GDGCVEVLAATQT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL 140 (442)
Q Consensus 71 ~~~~~~~~~~~~---~~~-~~~~v~i~~~~~~----~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i 140 (442)
+++++...|+-. ..+ ....+..+..+.. ....-...|.|.++....... .++++...+.+++.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 998764323211 110 0111111110000 001112235677777655432 344333344689999999995
Q ss_pred ee-cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCc--eEEEEeCCCcccccccccccccccccccccccc
Q 013483 141 YR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (442)
Q Consensus 141 ~~-~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~--v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (442)
.. ..--.++-.+...+.++.+-+.+...+ .+.-|.++.. +|+ +.++.+-|....... + ....+ .
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~-~g~~~vvEysel~~~~~~~~---~------~~g~l--~ 235 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLV-DGKPQVVEYSEISDELAEKR---D------ADGEL--Q 235 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEE-CCeEEEEEeecCCHHHHhcc---C------cCCcE--e
Confidence 43 333466777888899988877665532 2344555542 444 444444333221100 0 00000 0
Q ss_pred cceeeeeEEEEeHHHHHHHHhh
Q 013483 218 PYIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 218 ~~l~~~Giy~~~~~~l~~~l~~ 239 (442)
-+..++.+.+|+.+++.++++.
T Consensus 236 f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 236 YNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cccchHhhheeCHHHHHHHHhh
Confidence 1223556778888888776543
No 163
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.02 E-value=1e-09 Score=101.87 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=22.1
Q ss_pred eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
+.||++++||.|++| ||++++||+|++|
T Consensus 251 V~IGe~~lIGagA~IGI~IGd~~iIGAGavV 281 (341)
T TIGR03536 251 ISVGEGCLLGANAGIGIPLGDRCTVEAGLYI 281 (341)
T ss_pred EEECCCcEECCCCEEeeEECCCCEECCCCEE
Confidence 678888888888776 8888888888764
No 164
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.02 E-value=1.2e-09 Score=110.90 Aligned_cols=116 Identities=26% Similarity=0.269 Sum_probs=73.8
Q ss_pred CccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCC
Q 013483 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (442)
Q Consensus 306 ~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (442)
+.|++++.|+++.+.+++||++|.|+ ++.|.+|+||++|.|++ +.| +.+.+|+..++.+ +.||+
T Consensus 283 ~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~-~~~~i~~~~~i~d-------------~~Ig~ 347 (430)
T PRK14359 283 SHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKL-NGVKAGHLSYLGD-------------CEIDE 347 (430)
T ss_pred eEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEe-ccccccccccccC-------------CEECC
Confidence 34455555555566678888888888 66677788888886664 223 3333343322211 67777
Q ss_pred CcEee-eeEeCC-------CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 385 NTKIK-ECIIDK-------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 385 ~~~i~-~~~ig~-------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
+|.|+ +++++. .++||++|.++....+....+||++++||+|++| +.+++.+
T Consensus 348 ~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~ 410 (430)
T PRK14359 348 GTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLA 410 (430)
T ss_pred CCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEE
Confidence 77776 444432 2556666666655555567899999999999888 5555554
No 165
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.02 E-value=1.8e-09 Score=96.82 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=42.7
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccce
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEAD 415 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~ 415 (442)
++.||++|.|++++.|++.+.+|++ +.|+.+|.+. +++||++|.||.++++.. ..
T Consensus 114 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~ 169 (197)
T cd03360 114 DARIGDNVIINTGAVIGHDCVIGDF------------------VHIAPGVVLSGGVTIGEGAFIGAGATIIQ------GV 169 (197)
T ss_pred CCEECCCeEECCCCEECCCCEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEcC------CC
Confidence 4566666666666666555555554 5666666664 466666666666666543 45
Q ss_pred eeCCCeEEccCcEE
Q 013483 416 RSAEGFYIRSGVTV 429 (442)
Q Consensus 416 ~~~~~~~i~~~~~v 429 (442)
++++++.|+++++|
T Consensus 170 ~ig~~~~v~~~~~v 183 (197)
T cd03360 170 TIGAGAIIGAGAVV 183 (197)
T ss_pred EECCCCEECCCCEE
Confidence 57777777777666
No 166
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.01 E-value=2.2e-09 Score=86.10 Aligned_cols=61 Identities=20% Similarity=0.394 Sum_probs=52.7
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.|++++.| ++++||++|.|+ ++.|.+++++.+ +.|+++|.|.+|+|++++.||+
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 345555554 489999999999 999999988776 9999999999999999999999
Q ss_pred CeEEcc
Q 013483 402 NVIIAN 407 (442)
Q Consensus 402 ~~~~~~ 407 (442)
++.+.+
T Consensus 57 ~~~i~~ 62 (104)
T cd04651 57 NAVIRR 62 (104)
T ss_pred CCEEEe
Confidence 999964
No 167
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.01 E-value=1.9e-09 Score=88.84 Aligned_cols=83 Identities=22% Similarity=0.204 Sum_probs=52.9
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+++|+++|.|+ ++.+ .+++||++|.|++++.+.+....+. .+..++.+.+++||++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 46677777776 4444 3567777777777776666544332 344566677888888888
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
||+++++.+ ...+++++.|++++.+
T Consensus 76 Ig~~~~v~~------~~~ig~~~~i~~~~~v 100 (119)
T cd03358 76 IGANATILP------GVTIGEYALVGAGAVV 100 (119)
T ss_pred ECcCCEEeC------CcEECCCCEEccCCEE
Confidence 888887754 2345666666666554
No 168
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.00 E-value=3.3e-09 Score=98.65 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=64.8
Q ss_pred ccccCccCCCceecCCceeeeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcce
Q 013483 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (442)
Q Consensus 302 ~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (442)
...++.+.|++++.. +++|+++++|.+..+ .++.||++|.|+.++.|++++.+|++ +
T Consensus 100 ~~~~~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v 157 (272)
T PRK11830 100 KEAGVRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------V 157 (272)
T ss_pred ccCCcEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------c
Confidence 345566666666533 466777777765444 35677777777777777777777776 7
Q ss_pred EeCCCcEee---------eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccC
Q 013483 381 GIGENTKIK---------ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 426 (442)
Q Consensus 381 ~i~~~~~i~---------~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~ 426 (442)
.|++++.|+ +++||++|.||.++++.... +||+++.||.|
T Consensus 158 ~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv------~IGdgavIgag 206 (272)
T PRK11830 158 HLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGV------IVEEGSVLGMG 206 (272)
T ss_pred EECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCC------EECCCCEEcCC
Confidence 777777775 37888888888888886543 44444444444
No 169
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=1.8e-09 Score=110.35 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=37.8
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCC-----Cc-----ccceeeCCCeEEccCcE------------EEcCCcEE
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSE-----GI-----QEADRSAEGFYIRSGVT------------VILKNSVI 436 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~-----~~-----~~~~~~~~~~~i~~~~~------------vi~~~~~v 436 (442)
+.||++|.|. +++||++|+|++++.+.+.. .+ -...+|++++.||+++. +||++++|
T Consensus 323 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~i 402 (458)
T PRK14354 323 VTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFI 402 (458)
T ss_pred cEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEE
Confidence 5666666665 56666777666666553211 00 12246667777776643 36888888
Q ss_pred cCCccC
Q 013483 437 TDGFVI 442 (442)
Q Consensus 437 ~~~~~i 442 (442)
|++++|
T Consensus 403 g~~s~i 408 (458)
T PRK14354 403 GCNSNL 408 (458)
T ss_pred ccCCEE
Confidence 887753
No 170
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.99 E-value=2.4e-09 Score=81.26 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=44.5
Q ss_pred cCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCe
Q 013483 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403 (442)
Q Consensus 325 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~ 403 (442)
++++.|+ .+.+.+++||++|.|++++.|.++++..+ +.|++++.|.+++|++++.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~~ 63 (79)
T cd05787 3 GRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKGC 63 (79)
T ss_pred cCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCCC
Confidence 4444444 34444677888888888888877666554 788888888878877777777777
Q ss_pred EEcc
Q 013483 404 IIAN 407 (442)
Q Consensus 404 ~~~~ 407 (442)
.+..
T Consensus 64 ~i~~ 67 (79)
T cd05787 64 TIPP 67 (79)
T ss_pred EECC
Confidence 6653
No 171
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.99 E-value=2.7e-09 Score=98.64 Aligned_cols=83 Identities=12% Similarity=0.208 Sum_probs=56.1
Q ss_pred eeEEcCCcEECCCCEEeceE-EECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccc
Q 013483 337 HSVVGIRSRINANVHLKDTM-MLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEA 414 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~ 414 (442)
...||+++.|.+++.|..++ .+|+ ..| ++.|. +|+||++|+|+.++.|... +...
T Consensus 165 GAyLGeGtvVm~~a~VN~nAgtIG~-------------------~iI--~g~I~HdvvIGd~~~IgpGvsI~G~--LsGg 221 (319)
T TIGR03535 165 GAHLAEGTTVMHEGFVNFNAGTLGA-------------------SMV--EGRISAGVVVGDGSDIGGGASIMGT--LSGG 221 (319)
T ss_pred ccEECCCCEEcCCCEEccCceEecC-------------------ceE--EEEEccCCEECCCCEECCCceecce--ecCC
Confidence 45666666666666666666 4565 233 34454 5666677777777775541 2233
Q ss_pred ----eeeCCCeEEccCcEE---EcCCcEEcCCccC
Q 013483 415 ----DRSAEGFYIRSGVTV---ILKNSVITDGFVI 442 (442)
Q Consensus 415 ----~~~~~~~~i~~~~~v---i~~~~~v~~~~~i 442 (442)
+.||++++||.|++| ||++++||+|++|
T Consensus 222 ~~~pV~IGe~~~IGagA~IGI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 222 GKEVISIGERCLLGANSGLGISLGDDCVVEAGLYV 256 (319)
T ss_pred CcccEEECCCcEECCCCEECeEECCCCEECCCCEE
Confidence 689999999999887 9999999999875
No 172
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.98 E-value=8.4e-09 Score=92.44 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=6.9
Q ss_pred EcCCcEEcCCcc
Q 013483 430 ILKNSVITDGFV 441 (442)
Q Consensus 430 i~~~~~v~~~~~ 441 (442)
||++++|+++|+
T Consensus 171 ig~~~~v~~~~~ 182 (197)
T cd03360 171 IGAGAIIGAGAV 182 (197)
T ss_pred ECCCCEECCCCE
Confidence 556666665554
No 173
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.98 E-value=2.6e-09 Score=87.99 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=33.6
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccCCCc---------ccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGI---------QEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.|++++.|+ +|+||++|.|++++.+.+.... -...+|+++++||.++.+ ||+++.|++++++
T Consensus 23 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 23 VKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred cEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEE
Confidence 4444444442 3444444444444444432111 123467777777776554 7788888777653
No 174
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.97 E-value=3.9e-09 Score=80.15 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=62.7
Q ss_pred cCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCC
Q 013483 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (442)
Q Consensus 308 ~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 385 (442)
+++.+.+ +++.+.++.|+++|.|+ .+.+.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 3455566 45666678899999998 78889999999999999999999877655 899999
Q ss_pred cEeee-eEeCCCcEECC
Q 013483 386 TKIKE-CIIDKNARIGK 401 (442)
Q Consensus 386 ~~i~~-~~ig~~~~ig~ 401 (442)
+.+.+ +++|++++|+.
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99987 99999888874
No 175
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.95 E-value=3.6e-08 Score=92.63 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=121.7
Q ss_pred EEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc--------CCcEEEEEeccChhhHHHHHHhhcc
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------GINKVYILTQYNSASLNRHLARAYN 78 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~--------gi~~i~iv~~~~~~~i~~~~~~~~~ 78 (442)
.+|+||||.||||+ .+.||+|+||+ |+ |+|++.++++.+. ++..+++...+..+++.+++++..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 58999999999996 78999999999 89 9999999999862 466666666677778899997632
Q ss_pred CCCC-c-ccCCceEEEecccc----cCCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeee-ecCHHHHH
Q 013483 79 YGSG-V-TFGDGCVEVLAATQ----TPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY-RMDYMDFV 149 (442)
Q Consensus 79 ~~~~-~-~~~~~~v~i~~~~~----~~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~~l 149 (442)
+..+ . -|..+.+..+.... .........|.|.|+.+.... ..++.+...+.+++.+.+.|.+. ...=..++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 1111 1 01111111110000 000001223567777765443 23333323346788899999944 34123456
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCc--eEEEEeCCCcccccccccccccccccccccccccceeeeeEEE
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~--v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~ 227 (442)
-.+...+.++.+-+.+....+ +.-|.+...++++ ++++.+-|.....+. .+..-.. .....+....++..+.
T Consensus 157 G~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~--~~~~~~~---~~~~~~~~~~n~~~~~ 230 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKM--VNNQIPK---DIDDAPFFLFNTNNLI 230 (266)
T ss_pred HHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhcc--ccccCcC---CCCceeeccceEEEEE
Confidence 667777788777666554422 2335544422254 444433222111000 0000000 0011123556889999
Q ss_pred EeHHHHHHHHh
Q 013483 228 FKKEILLNLLR 238 (442)
Q Consensus 228 ~~~~~l~~~l~ 238 (442)
|+-+.+.+.++
T Consensus 231 ~~l~~l~~~~~ 241 (266)
T cd04180 231 NFLVEFKDRVD 241 (266)
T ss_pred EEHHHHHHHHH
Confidence 99998877665
No 176
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.94 E-value=3.7e-09 Score=80.24 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=55.2
Q ss_pred EEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceeeC
Q 013483 339 VVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSA 418 (442)
Q Consensus 339 ~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~ 418 (442)
+||+++.|++++.|.+++ ++++ +.|+++|.|.+|+|++++.|++++.+.+ ..+.+..+++
T Consensus 1 ~ig~~~~I~~~~~i~~s~-ig~~------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSV-IGRN------------------CKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccE-ECCC------------------CEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEEC
Confidence 478999999999998754 4554 9999999999999999999999999963 3333344444
Q ss_pred CCeEEccCcEEEcCCcEEc
Q 013483 419 EGFYIRSGVTVILKNSVIT 437 (442)
Q Consensus 419 ~~~~i~~~~~vi~~~~~v~ 437 (442)
++++|+.++ +|++++.||
T Consensus 61 ~~~~i~~~~-~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPGS-LISFGVVIG 78 (79)
T ss_pred CCCEECCCC-EEeCCcEeC
Confidence 444444442 234544444
No 177
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.93 E-value=7.3e-09 Score=93.50 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=54.1
Q ss_pred eeecCChHHHHHHhhhhhcCC-CCccccCCCCcccccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE-eeeEEcCCc
Q 013483 270 WEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRS 344 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i-~~~~ig~~~ 344 (442)
+..++.++...+....+.... .....+.+.+.+.+.+.++.++.+ +++.|. ++.|+++|.|+ .+.+ .++.||+++
T Consensus 63 iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 142 (201)
T TIGR03570 63 VVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYV 142 (201)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCC
Confidence 444444444444444443221 111223333333444444444444 333332 24555555554 4444 345555555
Q ss_pred EECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 345 RINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 345 ~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
.|++++.|...+.++++ +.||+++.+. ++.||++|.|++++++.
T Consensus 143 ~i~~~~~i~~~~~ig~~------------------~~ig~~~~v~~~~~i~~~~~i~~~~~v~ 187 (201)
T TIGR03570 143 HIAPGVTLSGGVVIGEG------------------VFIGAGATIIQGVTIGAGAIVGAGAVVT 187 (201)
T ss_pred EECCCCEEeCCcEECCC------------------CEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 55555555544444444 4555555553 45555555555555553
No 178
>PRK10502 putative acyl transferase; Provisional
Probab=98.93 E-value=5.8e-09 Score=92.58 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=23.8
Q ss_pred eEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec--eEEECCc
Q 013483 322 SIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD--TMMLGAD 361 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~--~~~~~~~ 361 (442)
+.||.++.|. .+.+ .+..||++|.|++++.|.+ .+.+|++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCC
Confidence 3445555554 3333 2577888888888888764 3444544
No 179
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=9.5e-09 Score=81.75 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=48.5
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+++|+++|.|+ .+.| .+++||++|.|+. .|.++++++. +.|+++++|++++||+++.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 46666777766 5555 3577777777753 4666666665 7888888888888888888
Q ss_pred ECCCeEEccC
Q 013483 399 IGKNVIIANS 408 (442)
Q Consensus 399 ig~~~~~~~~ 408 (442)
||+++.+.|.
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 8888888764
No 180
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.90 E-value=2.1e-07 Score=92.89 Aligned_cols=351 Identities=14% Similarity=0.113 Sum_probs=183.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccCh-hhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYNS-ASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~~-~~i~~~~~~~~~~~ 80 (442)
.++.+|.||||.||||+ .+.||.++|+.+..++++..++++.. .|. -..+|-+.... ++-.+++++.-.+.
T Consensus 78 ~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSN 154 (469)
T ss_pred hcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCc
Confidence 57889999999999999 88999999996644999998888755 343 25566666554 46777776532111
Q ss_pred CCcc-cCCceEE-Eecc-----cccCCcCCC-ccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCeeeecCHHHHHH
Q 013483 81 SGVT-FGDGCVE-VLAA-----TQTPGEAGK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ 150 (442)
Q Consensus 81 ~~~~-~~~~~v~-i~~~-----~~~~~~~~~-~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~ 150 (442)
.... |....+. +... ......... -.|.|.++....... .++++...+.+++.+.+.|.+...-=..++.
T Consensus 155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg 234 (469)
T PLN02474 155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILN 234 (469)
T ss_pred cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHH
Confidence 1111 1111110 0000 000000000 134566666544332 2333333446899999999964432236788
Q ss_pred HHHHcCCcEEEEEeecCCCcCCcccEEEEcCCC--ceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEE
Q 013483 151 NHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 228 (442)
Q Consensus 151 ~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~--~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~ 228 (442)
++..+++++++-+.+...++ ..-|.+.. .+| ++.++.+-|.+...+.. ....-...++..+.|
T Consensus 235 ~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~f~-------------~~~kf~~fNtnn~w~ 299 (469)
T PLN02474 235 HLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNEFK-------------SIEKFKIFNTNNLWV 299 (469)
T ss_pred HHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHhhc-------------ccccceeeeeeeEEE
Confidence 88888999888776654432 22355443 344 45555554443211100 011235679999999
Q ss_pred eHHHHHHHHhhhCCCC---------c----ccccchhhhcccc-cceEEEEec-ceeeecCChHHHHHHhhhhhcCCCCc
Q 013483 229 KKEILLNLLRWRFPTA---------N----DFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPMF 293 (442)
Q Consensus 229 ~~~~l~~~l~~~~~~~---------~----~~~~~~l~~~i~~-~~i~~~~~~-g~~~di~t~~~~~~an~~~l~~~~~~ 293 (442)
+-++++++++...... + ...+.++-+++.- .+..++.++ ..+.-+.+..|++-+..++.....+.
T Consensus 300 ~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~ 379 (469)
T PLN02474 300 NLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGF 379 (469)
T ss_pred EHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCe
Confidence 9999887765321100 0 0000011111110 122222222 34777888888887777665443221
Q ss_pred cccCCCCcccc--cCccCCCcee-c--CCceeeeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhh
Q 013483 294 SFYDATKPIYT--SRRNLPPSKI-D--DSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE 368 (442)
Q Consensus 294 ~~~~~~~~~~~--~~~~~~~~~i-~--~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~ 368 (442)
-...+...... ..++++.... . ..++. +-...++ ..+-+|-.++..|.++++...+++-++
T Consensus 380 l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~------- 445 (469)
T PLN02474 380 VIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK------- 445 (469)
T ss_pred EEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC-------
Confidence 11111111111 1122222111 0 01110 1111111 124566678888888888888887653
Q ss_pred hhhhhcCCCcceEeCCCcEeeeeEeCCC
Q 013483 369 VASLLAEGRVPVGIGENTKIKECIIDKN 396 (442)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 396 (442)
++.|..|-++++++|.+|-.+
T Consensus 446 -------~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 446 -------SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred -------CCCeeecCCCcEecceeeccc
Confidence 122367888888877776544
No 181
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=6.8e-09 Score=79.05 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=50.5
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 401 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~ 401 (442)
+.|++++.|++ +++||++|.|++++.|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34555555543 688889999999999998887776 8999999999999999999999
Q ss_pred CeEEcc
Q 013483 402 NVIIAN 407 (442)
Q Consensus 402 ~~~~~~ 407 (442)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 888754
No 182
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.88 E-value=6.2e-09 Score=90.13 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=36.9
Q ss_pred eEeCCCcEECCCeEEccCCCc--ccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 391 CIIDKNARIGKNVIIANSEGI--QEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~--~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++||+||.|-.+|++++...- ..|.+||+|++||+|+.| ||+++.|||||+|
T Consensus 94 a~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVV 152 (194)
T COG1045 94 AVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred eEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence 455555555566666544322 236689999999999887 8899999999875
No 183
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.84 E-value=2e-08 Score=87.33 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=52.0
Q ss_pred eeEEcCCcEECCCCEEece---EEECCccccchhhhhhhhcCCCcceEeCCCcEeee-------------eEeCCCcEEC
Q 013483 337 HSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-------------CIIDKNARIG 400 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------------~~ig~~~~ig 400 (442)
+..||+++.|++++.|... +.+|++ |.|+++|.|.. ++||+++.|+
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig 82 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRY------------------CILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIG 82 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCC------------------cEECCCCEEeCCccccCCCccccCeEECCccEEC
Confidence 5677888888888877754 567776 77777777753 4677788888
Q ss_pred CCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 401 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
+++++.+ ..+.+...|+++++|+.++. |++++.|++|
T Consensus 83 ~~~~i~~-~~Ig~~v~Ig~~~~Ig~~~~-I~~~~~i~~g 119 (161)
T cd03359 83 ENCVVNA-AQIGSYVHIGKNCVIGRRCI-IKDCVKILDG 119 (161)
T ss_pred CCCEEEe-eEEcCCcEECCCCEEcCCCE-ECCCcEECCC
Confidence 7777654 23344445555555555533 3444444433
No 184
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.84 E-value=2.5e-09 Score=99.53 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=15.2
Q ss_pred eeEEcCCcEECCCCEEeceEEECC
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
..+||++|.||+++.|..++.+|+
T Consensus 161 givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 161 GIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred CeEECCCCEECCCCEEcCCcEEec
Confidence 356666666666666666666654
No 185
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.84 E-value=3.1e-08 Score=78.81 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=36.7
Q ss_pred eeEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ 398 (442)
+.++++++.|. .+.+ ..++||+++.|++++.|++.+.+|++ +.||. .|.+|+|++++.
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~ 70 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSN 70 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCE
Confidence 34555555555 3333 34666666666666666655555554 55543 345566666665
Q ss_pred ECCCeEEc
Q 013483 399 IGKNVIIA 406 (442)
Q Consensus 399 ig~~~~~~ 406 (442)
|+.++.++
T Consensus 71 i~~~~~lg 78 (101)
T cd05635 71 KQHDGFLG 78 (101)
T ss_pred ecCcCEEe
Confidence 55555553
No 186
>PLN02694 serine O-acetyltransferase
Probab=98.84 E-value=1.9e-08 Score=93.67 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.5
Q ss_pred eeEEcCCcEECCCCEEeceEEECC
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGA 360 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~ 360 (442)
.++||++|.||+++.|..++.+|+
T Consensus 180 GVVIGe~a~IGdnv~I~~~VtLGg 203 (294)
T PLN02694 180 GVVIGETAVIGNNVSILHHVTLGG 203 (294)
T ss_pred CeEECCCcEECCCCEEeecceeCC
Confidence 477888888888888877777775
No 187
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.84 E-value=1.6e-08 Score=90.55 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=40.9
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCccccchhhhhhhhcCCCcceEeCCCcEeee-------------------eEeCC
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-------------------CIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------------------~~ig~ 395 (442)
++.||+++.|+.++.|.+ .+.+|++ |.|+++|.|.. .+||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 677888888888877743 3666665 66666666631 34444
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+|.||.++++. ...+||++++||+|++|
T Consensus 137 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV 164 (203)
T PRK09527 137 NVWIGSHVVIN------PGVTIGDNSVIGAGSVV 164 (203)
T ss_pred CcEECCCCEEc------CCCEECCCCEECCCCEE
Confidence 44444444443 34456666666666555
No 188
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.82 E-value=1.3e-08 Score=92.19 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=27.7
Q ss_pred CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 377 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 377 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
..|++||+||.|+ ||.+..++.+|+||++.. |++|+.++.+
T Consensus 180 a~Pv~IgdncliGAns~~veGV~vGdg~VV~a------------Gv~I~~~tki 221 (271)
T COG2171 180 ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAA------------GVFITQDTKI 221 (271)
T ss_pred CCCeEECCccEeccccceEeeeEeCCCcEEec------------ceEEeCCcce
Confidence 4457777777777 677777777777777765 5666666554
No 189
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.80 E-value=6.9e-08 Score=80.51 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=23.2
Q ss_pred ccccCccCCCcee-cCCcee-eeEEcCCCEEeceEE-eeeEEcCCcEECCCCEEe
Q 013483 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLK 353 (442)
Q Consensus 302 ~~~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~~i~ 353 (442)
+..++.+++++.+ .++.+. ++.||++|.|.. .+ .+++||.+|.|++++.|.
T Consensus 10 V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 10 VRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred ECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 3344444444444 333331 444555554431 22 245555555555555554
No 190
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.80 E-value=1.7e-08 Score=94.07 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=17.9
Q ss_pred eEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 391 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
++||++|.||+|++|. ...+||+++.||+|++|
T Consensus 194 p~IGd~V~IGaga~Il------ggv~IG~~a~IGAgSvV 226 (273)
T PRK11132 194 PKIREGVMIGAGAKIL------GNIEVGRGAKIGAGSVV 226 (273)
T ss_pred CEECCCcEEcCCCEEc------CCCEECCCCEECCCCEE
Confidence 3455555555555554 34556666666666555
No 191
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.80 E-value=4.1e-08 Score=87.93 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=17.8
Q ss_pred eeEEcCCcEECCCCEEe--ceEEECCc
Q 013483 337 HSVVGIRSRINANVHLK--DTMMLGAD 361 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~--~~~~~~~~ 361 (442)
...||+++.|++++.|. ..+.+|++
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCC
Confidence 46788888888887776 35666665
No 192
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=1.8e-07 Score=81.94 Aligned_cols=220 Identities=21% Similarity=0.222 Sum_probs=139.4
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
+++.-|||+|.|.++|.. .|-+.+++|+ |||.|+|+.+..++ +++|+|-+ .++.|.+...+ ++...-
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~---ygak~~ 68 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK---YGAKVF 68 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH---hCcccc
Confidence 356779999999999985 7999999999 99999999999988 57776655 45566665544 232211
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHHHHcCCcEEEE
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITIS 162 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~~~~~~~~tl~ 162 (442)
+.. +.+..+. ...+.+++.++....... .+.++++.+-. +....+++.++.+...+.+..+.
T Consensus 69 -------~~R----p~~LA~D-~ast~~~~lh~le~~~~~----~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 69 -------LKR----PKELASD-RASTIDAALHALESFNID----EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred -------ccC----ChhhccC-chhHHHHHHHHHHHhccc----cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 111 1111100 123445666666666541 23477777766 44456899999999888887777
Q ss_pred EeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 013483 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (442)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~ 242 (442)
+.+........| . +.+|.+..+.+.++... +.+.....+..+..+|+++.+.|.+ +
T Consensus 133 a~e~e~~p~k~f---~-~~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~--- 188 (228)
T COG1083 133 AVECEHHPYKAF---S-LNNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---N--- 188 (228)
T ss_pred EeecccchHHHH---H-hcCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---c---
Confidence 777654322222 2 23477877777664321 1222234567788999999987742 1
Q ss_pred CCcccccchhhhcccccceEEEEec-ceeeecCChHHHHHHhhhhhc
Q 013483 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (442)
Q Consensus 243 ~~~~~~~~~l~~~i~~~~i~~~~~~-g~~~di~t~~~~~~an~~~l~ 288 (442)
...|. .+...|..+ ...+||++..||..|+..+..
T Consensus 189 -~~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 -DCFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred -Cceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 11111 122333333 457899999999999887653
No 193
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.79 E-value=1.8e-07 Score=94.21 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=121.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc------------C-CcEEEEEec-cChhh
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS------------G-INKVYILTQ-YNSAS 68 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~------------g-i~~i~iv~~-~~~~~ 68 (442)
..++.+||||||+||||+ ...||+|+||+ |+ |++++.++++... + .-.++|++. +..+.
T Consensus 104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 457999999999999997 78999999994 78 9999999999874 1 224555554 66678
Q ss_pred HHHHHHhhccCCCC---cc-cCCceEEEeccc-cc----CCcCCCccccChHHHHHHhhh--hhcCCCCCccCeEEEEcC
Q 013483 69 LNRHLARAYNYGSG---VT-FGDGCVEVLAAT-QT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (442)
Q Consensus 69 i~~~~~~~~~~~~~---~~-~~~~~v~i~~~~-~~----~~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~g 137 (442)
+.+++.+...|+-. .. |....+..+... .. ....-...|.|.|+....... .++++...+.+++.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 88888753222211 11 111111111000 00 000111234677766655432 233333344678999999
Q ss_pred CeeeecC-HHHHHHHHHHcCC-cEEEEEeecCCCcCCcccEEEEc-CCCceEEEEeCCCccccccccccccccccccccc
Q 013483 138 DHLYRMD-YMDFVQNHRQSGA-DITISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (442)
Q Consensus 138 D~i~~~~-l~~~l~~~~~~~~-~~tl~~~~~~~~~~~~~g~v~~d-~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (442)
|.+.... --.++-.+...+. ++.-.+.+... .+.-|.++.. ..-.|+.+.|-+......... .....
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~--------~~g~l 329 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNNDEL--------LTGEL 329 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcccc--------cCCee
Confidence 9964433 2355666666666 55544433322 2445666542 222566666644322110000 00110
Q ss_pred ccccceeeeeEEEEeHHHHHHHHh
Q 013483 215 EEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 215 ~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
.-...++..++|+.+++.+.++
T Consensus 330 --~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 --AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred --cccccceEEEEEEHHHHHHHhh
Confidence 1234588899999999977654
No 194
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.78 E-value=9.7e-09 Score=83.17 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=75.2
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEec------------eEEECCccccchhhhhhhhcCCCcceEeCCCcEe
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD------------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI 388 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 388 (442)
.+++.++|.|. .++.++.+|++|+++.+++|.+ .+.+|++ +.|++.|++
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVV 99 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVV 99 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEe
Confidence 57888899887 5677899999999999999977 5667776 889999999
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCC
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 439 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~ 439 (442)
.-+.||.-+++|+++++++...+.+.++|.|+..+-.- +++.++++++++
T Consensus 100 nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpe-t~vppy~~~~g~ 149 (184)
T KOG3121|consen 100 NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPE-TLVPPYSTIGGN 149 (184)
T ss_pred ehhhheeeeEeccceeEcCceEhhhheeccCCcccCcc-cccCCceEEcCC
Confidence 88888999999999999886666666666666444433 224555555543
No 195
>PRK10502 putative acyl transferase; Provisional
Probab=98.77 E-value=5.9e-08 Score=86.13 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=47.6
Q ss_pred cccCccCCCceecCCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCc
Q 013483 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRV 378 (442)
Q Consensus 303 ~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (442)
...+.+.+++.+... .+..||+++.|+ ++.+ ..++||++|.|++++.|.....- +..+ ... -...
T Consensus 55 G~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~----~~~~-~~~----~~~~ 123 (182)
T PRK10502 55 GKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHD----YSDP-HFD----LNTA 123 (182)
T ss_pred CCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCC----CcCC-Ccc----cccC
Confidence 344445555544210 146677777777 5555 25678888888877776432110 0000 000 0011
Q ss_pred ceEeCCCcEee-eeEeCCCcEECCCeEEcc
Q 013483 379 PVGIGENTKIK-ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 379 ~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~ 407 (442)
|+.||++|.|+ +|.|..+++||++++++.
T Consensus 124 ~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga 153 (182)
T PRK10502 124 PIVIGEGCWLAADVFVAPGVTIGSGAVVGA 153 (182)
T ss_pred CEEEcCCcEEcCCCEEcCCCEECCCCEECC
Confidence 25666666665 555555555555555553
No 196
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.76 E-value=6.8e-08 Score=73.50 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=52.8
Q ss_pred eeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee-eEeCCCcE
Q 013483 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~ig~~~~ 398 (442)
+++|+++|.|+ .+.++++++++++.|++++.|.++++..+ +.|++++.+.+ ++||++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 57788888887 77778999999999999999999877665 89999999986 88888888
Q ss_pred ECC
Q 013483 399 IGK 401 (442)
Q Consensus 399 ig~ 401 (442)
|++
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 864
No 197
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.74 E-value=1.3e-07 Score=84.66 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=23.7
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEece
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~ 355 (442)
...||+++.|+ .+.+ ..++||++|.|++++.|.++
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 46677777776 4444 35777777777777777653
No 198
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.73 E-value=9.8e-08 Score=85.59 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=61.9
Q ss_pred ccccCccCCCceec-CCceeeeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCC
Q 013483 302 IYTSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (442)
Q Consensus 302 ~~~~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 376 (442)
+..++.|.+|+.+. +. ++.||+++.|+ .+.+ .++.||++|.|++++.|... +.... ..........
T Consensus 58 ig~~~~I~~~~~~~~g~---ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~~---~~~r~~g~~~ 128 (203)
T PRK09527 58 VGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPVH---HELRKNGEMY 128 (203)
T ss_pred cCCCcEEcCCEEEeeCC---CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCCC---hhhccccccc
Confidence 34556677777762 22 57788888887 5555 24789999999999888632 11000 0000000111
Q ss_pred CcceEeCCCcEee-eeEeCCCcEECCCeEEccCCCccc
Q 013483 377 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 413 (442)
Q Consensus 377 ~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~~~~~~ 413 (442)
..|+.||++|+|+ +|+|..+++||++++++....+.+
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 2347788888886 677777777777777776554443
No 199
>PLN02739 serine acetyltransferase
Probab=98.71 E-value=3.3e-08 Score=93.91 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=42.5
Q ss_pred eeEEcCCcEEC--CCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEE
Q 013483 337 HSVVGIRSRIN--ANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVII 405 (442)
Q Consensus 337 ~~~ig~~~~i~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~ 405 (442)
.+.||+++.|. .+++|++.+++|++ |.|.++++|++ .+||++|.||+|++|
T Consensus 211 ~A~IG~Gv~IdHg~GVVIG~~avIGdn------------------v~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~I 272 (355)
T PLN02739 211 AARIGKGILLDHGTGVVIGETAVIGDR------------------VSILHGVTLGGTGKETGDRHPKIGDGALLGACVTI 272 (355)
T ss_pred CccccCceEEecCCceEECCCCEECCC------------------CEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEE
Confidence 34555566664 36666666666665 66666666642 455555555555555
Q ss_pred ccCCCcccceeeCCCeEEccCcEE
Q 013483 406 ANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 406 ~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
. ...+||+++.||+|++|
T Consensus 273 l------G~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 273 L------GNISIGAGAMVAAGSLV 290 (355)
T ss_pred e------CCeEECCCCEECCCCEE
Confidence 4 35567777777777666
No 200
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=6e-08 Score=91.83 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=90.6
Q ss_pred ceeeecCChHHHHHHhhhhhcCCCCccccCCCCcccccCccCCCcee-cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcE
Q 013483 268 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSR 345 (442)
Q Consensus 268 g~~~di~t~~~~~~an~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~ 345 (442)
+.+++++.+.-+...... +.+........+-+..+..+++.+.+ +++.|..++||.+|.|+ ++.|.+|++-++++
T Consensus 300 ~~y~eiN~~k~~~~l~~e---~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~ 376 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLCSE---AKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV 376 (433)
T ss_pred HHHHhhhHHHHHHHhccc---cccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence 567778764444443221 11111122222445556778888998 58888899999999999 88889999999999
Q ss_pred ECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEcc
Q 013483 346 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 346 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~ 407 (442)
||+|+.|++|++..+ +.||++|.+.||+||.|=++.+..+.++
T Consensus 377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccc
Confidence 999999999988665 8999999999999999999997777665
No 201
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.68 E-value=1.1e-07 Score=82.60 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccceee
Q 013483 338 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRS 417 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~ 417 (442)
++||+++.||+++.|++++.++.. ....+ ...++||++|.||+++++.. ..+|
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~~-------------------~~~~~--~~~~~Ig~~v~Ig~~a~I~~------~v~I 134 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGGT-------------------GKEKG--KRHPTVGEGVMIGAGAKVLG------NIEV 134 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECCC-------------------ccccC--CcCCEECCCcEEcCCCEEEC------CcEE
Confidence 566666666666666666666541 11111 22345666666666666642 3455
Q ss_pred CCCeEEccCcEE---EcCCcEE
Q 013483 418 AEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 418 ~~~~~i~~~~~v---i~~~~~v 436 (442)
|++++||++++| +.+++++
T Consensus 135 G~~~~Iga~s~V~~dvp~~~~~ 156 (162)
T TIGR01172 135 GENAKIGANSVVLKDVPPGATV 156 (162)
T ss_pred CCCCEECCCCEECCCCCCCCEE
Confidence 666666666555 4444443
No 202
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.65 E-value=1.1e-07 Score=82.77 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=23.3
Q ss_pred ceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 414 ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
..+||++++||+++++ ||+++.||++++|
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V 146 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146 (162)
T ss_pred CCEECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence 3478888888888776 8999999999875
No 203
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.65 E-value=1.4e-07 Score=71.00 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=16.0
Q ss_pred EcCCCEEe-ceEEe-eeEEcCCcEECCCCEEece
Q 013483 324 ISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 324 i~~~~~i~-~~~i~-~~~ig~~~~i~~~~~i~~~ 355 (442)
|++++.|+ .+.+. +++||+++.|++++.|+++
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 34444444 23332 3566666666666655554
No 204
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.64 E-value=2.2e-07 Score=81.52 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=21.9
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~ 354 (442)
++.||+++.|+ .+.+ ...+||+++.|++++.|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEe
Confidence 34566666666 4433 2467888888888887754
No 205
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.64 E-value=2.3e-07 Score=74.02 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred eEeCCCcE---eeeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 380 VGIGENTK---IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 380 ~~i~~~~~---i~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+.|++++. +..++||++|.|+.++.+.. ..+++++++|++++++
T Consensus 41 ~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~------~~~Ig~~~~i~~~~~i 87 (101)
T cd03354 41 VTLGGKGKGGGKRHPTIGDNVVIGAGAKILG------NITIGDNVKIGANAVV 87 (101)
T ss_pred CEECCCccCCcCCCCEECCCcEEcCCCEEEC------cCEECCCCEECCCCEE
Confidence 44445553 56777888888887777753 3557777777777666
No 206
>PLN02694 serine O-acetyltransferase
Probab=98.62 E-value=1.1e-07 Score=88.71 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=28.9
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 389 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 389 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
.+++||++|.||+|++|.. ..+||+++.||+|++| |.+++++
T Consensus 211 r~piIGd~V~IGagA~Ilg------gi~IGd~a~IGAgSVV~kdVP~~~~v 255 (294)
T PLN02694 211 RHPKIGDGVLIGAGATILG------NVKIGEGAKIGAGSVVLIDVPPRTTA 255 (294)
T ss_pred CccEECCCeEECCeeEECC------CCEECCCCEECCCCEECCcCCCCcEE
Confidence 3567777777777777753 5677788888888777 4555544
No 207
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.62 E-value=1.7e-07 Score=82.19 Aligned_cols=76 Identities=29% Similarity=0.316 Sum_probs=51.0
Q ss_pred eeEEcCCcEECCCCEEe--ceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-------------------eeEeCC
Q 013483 337 HSVVGIRSRINANVHLK--DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------------------ECIIDK 395 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------------------~~~ig~ 395 (442)
+..||+++.|++++.|. ..+.+|++ +.|+++|.|. .+.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~------------------v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 123 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDN------------------VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGD 123 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCC------------------CEECCCCEEEeCCCCCChhHccccceecCCcEeCC
Confidence 57788888888888875 45677776 7777777773 345555
Q ss_pred CcEECCCeEEccCCCcccceeeCCCeEEccCcEE---EcCCcEE
Q 013483 396 NARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV---ILKNSVI 436 (442)
Q Consensus 396 ~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v---i~~~~~v 436 (442)
+|.||.++++. ...+||++++||+|++| |.+++++
T Consensus 124 ~~~Ig~~a~I~------~gv~Ig~~~~VgagavV~~~vp~~~vv 161 (169)
T cd03357 124 NVWIGGGVIIL------PGVTIGDNSVIGAGSVVTKDIPANVVA 161 (169)
T ss_pred CEEECCCCEEe------CCCEECCCCEECCCCEEccccCCCcEE
Confidence 55555555554 45677888888888777 4455443
No 208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.61 E-value=2.7e-07 Score=69.51 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=33.3
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEEc
Q 013483 338 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIA 406 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~~ 406 (442)
++||+++.|++++.|.+.+.+|++ +.|+++|.|.+ ++||++|.|+.++.+.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 357777777777777776677766 77777777764 4555555555555443
No 209
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.60 E-value=1.3e-07 Score=83.63 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=48.4
Q ss_pred cCccCCCceec-CCceeeeEEcCCCEEe-ceEEe---eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcc
Q 013483 305 SRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVP 379 (442)
Q Consensus 305 ~~~~~~~~~i~-~~~i~~~~i~~~~~i~-~~~i~---~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (442)
++.+.++.... + .+..||+++.++ .+.+. ..+||++|.|++++.|.....-.+. ...........|
T Consensus 59 ~~~i~~~~~~~~g---~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~------~~~~~~~~~~~~ 129 (183)
T PRK10092 59 EAYIEPTFRCDYG---YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDP------VARNSGAELGKP 129 (183)
T ss_pred CEEEeCCEEEeec---CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCCh------HHccccceecCC
Confidence 34455555441 1 156777777777 44442 2478888888888777543221110 000000000123
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEcc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~ 407 (442)
+.||++|+|+ +|+|.++++||++++++.
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIga 158 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVAS 158 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECC
Confidence 6666666664 566666666666666654
No 210
>PLN02357 serine acetyltransferase
Probab=98.60 E-value=2.3e-07 Score=88.92 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=29.8
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEe-eeeEeCCCcEECCCeEEc
Q 013483 338 SVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIA 406 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~ig~~~~~~ 406 (442)
++||++++||+++.|..++.+|+...... ....+.+++ |.||.++.| +++.||+++.||+++++.
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCC---eEECCceEEECCeEECCCCEECCCCEEC
Confidence 56666666666666666655554200000 000011111 455555444 355555555555555554
No 211
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.60 E-value=5.8e-07 Score=83.40 Aligned_cols=14 Identities=36% Similarity=0.352 Sum_probs=5.6
Q ss_pred eEEcCCcEECCCCE
Q 013483 338 SVVGIRSRINANVH 351 (442)
Q Consensus 338 ~~ig~~~~i~~~~~ 351 (442)
|+||++|.|++++.
T Consensus 200 vvIGd~~~IgpGvs 213 (319)
T TIGR03535 200 VVVGDGSDIGGGAS 213 (319)
T ss_pred CEECCCCEECCCce
Confidence 33334444443333
No 212
>PLN02357 serine acetyltransferase
Probab=98.59 E-value=1.5e-07 Score=90.19 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=39.8
Q ss_pred eEEcCCcEECC--CCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee---------eEeCCCcEECCCeEEc
Q 013483 338 SVVGIRSRINA--NVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE---------CIIDKNARIGKNVIIA 406 (442)
Q Consensus 338 ~~ig~~~~i~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~---------~~ig~~~~ig~~~~~~ 406 (442)
+.||+++.|.. +++|++.+++|++ |.|.++++|++ ++||++|.||+|++|.
T Consensus 233 a~IG~Gv~Idh~~giVIGe~avIGdn------------------V~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Il 294 (360)
T PLN02357 233 AKIGQGILLDHATGVVIGETAVVGNN------------------VSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCIL 294 (360)
T ss_pred CEECCCeEECCCCceEECCCCEECCC------------------CEEeCCceecCccccCCccCceeCCCeEECCceEEE
Confidence 34445555553 4555555555554 55555555543 5566666666665554
Q ss_pred cCCCcccceeeCCCeEEccCcEE
Q 013483 407 NSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
+..+||+++.||+|++|
T Consensus 295 ------ggV~IGdga~IGAgSVV 311 (360)
T PLN02357 295 ------GNITIGEGAKIGAGSVV 311 (360)
T ss_pred ------CCeEECCCCEECCCCEE
Confidence 35667777777777666
No 213
>PRK10191 putative acyl transferase; Provisional
Probab=98.56 E-value=2.2e-07 Score=78.81 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=50.1
Q ss_pred eeEEcCCcEECC--CCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeee--------eEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINA--NVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE--------CIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~--------~~ig~~~~ig~~~~~~ 406 (442)
++.||+++.|++ ++.|+..+.+|++ +.|+++|.|++ +.||++|.||+++.+.
T Consensus 47 ~a~Ig~~~~I~~g~~i~I~~~~~IGd~------------------~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~ 108 (146)
T PRK10191 47 AATIGRRFTIHHGYAVVINKNVVAGDD------------------FTIRHGVTIGNRGADNMACPHIGNGVELGANVIIL 108 (146)
T ss_pred CCEECCCeEECCCCeEEECCCcEECCC------------------CEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEe
Confidence 467888999998 5777777788876 77777777753 3566666666666665
Q ss_pred cCCCcccceeeCCCeEEccCcEE
Q 013483 407 NSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
.+.+||++++||+|++|
T Consensus 109 ------~~v~IG~~~~Igags~V 125 (146)
T PRK10191 109 ------GDITIGNNVTVGAGSVV 125 (146)
T ss_pred ------CCCEECCCCEECCCCEE
Confidence 46678888888888777
No 214
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.56 E-value=2.8e-07 Score=83.66 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=10.8
Q ss_pred eEEcCCcEECCCCEEeceEEECCc
Q 013483 338 SVVGIRSRINANVHLKDTMMLGAD 361 (442)
Q Consensus 338 ~~ig~~~~i~~~~~i~~~~~~~~~ 361 (442)
+.++++|.|.-+++++.|+.+|.+
T Consensus 139 A~~~~gtMVd~~as~G~~a~VGkn 162 (271)
T COG2171 139 AGTGEGTMVDGRASVGSCAQVGKN 162 (271)
T ss_pred cccCcceEEeeeeeeeccEEECCC
Confidence 444444444444444444444443
No 215
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.55 E-value=2.2e-07 Score=92.67 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=71.7
Q ss_pred ccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhh
Q 013483 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 373 (442)
.+++.+.+ ..+.|++++.|.+ .+.+++|+++|.|+ ++.+.+|+|+++|.|++++.|.++++..+
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------- 348 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------- 348 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------
Confidence 33444444 2445666666632 45579999999999 78889999999999999999999766554
Q ss_pred cCCCcceEeCCCcEeee-----eEeCCCcEECCCeEEc
Q 013483 374 AEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIA 406 (442)
Q Consensus 374 ~~~~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~~~ 406 (442)
+.|+++|.+.+ ++||++++|+++++++
T Consensus 349 ------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 ------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred ------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999976 8999999999988774
No 216
>PRK10191 putative acyl transferase; Provisional
Probab=98.55 E-value=3.7e-07 Score=77.40 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=35.0
Q ss_pred eEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEEC
Q 013483 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 400 (442)
Q Consensus 322 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig 400 (442)
+.+|+++.|++. .+++|++++.||+++.|++++.+|++... . .+ ++.||++|.|+ ++.|..+++||
T Consensus 48 a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~--------~-~~--~~~IGd~~~Ig~~~~I~~~v~IG 114 (146)
T PRK10191 48 ATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD--------N-MA--CPHIGNGVELGANVIILGDITIG 114 (146)
T ss_pred CEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC--------C-CC--CCEECCCcEEcCCCEEeCCCEEC
Confidence 445555555521 13455555555555555555555542100 0 00 13566666664 45555555555
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
++++++.
T Consensus 115 ~~~~Iga 121 (146)
T PRK10191 115 NNVTVGA 121 (146)
T ss_pred CCCEECC
Confidence 5555554
No 217
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.54 E-value=5e-07 Score=72.95 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEcCCCEEe-ceEE-e--eeEEcCCcEECCCCEEece
Q 013483 323 IISHGSFIT-SSFI-E--HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 323 ~i~~~~~i~-~~~i-~--~~~ig~~~~i~~~~~i~~~ 355 (442)
.||+++.|+ .+.+ . ++.||++|.|++++.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 344444444 3333 2 5788888888888888765
No 218
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.53 E-value=2.9e-07 Score=93.13 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred EcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCC--------
Q 013483 324 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK-------- 395 (442)
Q Consensus 324 i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~-------- 395 (442)
+.+.+.+..+.++++.||++|.| +++.|+++++.++ |.||++|.|.+|+|+.
T Consensus 295 ~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~~ 354 (429)
T PRK02862 295 YLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESSE 354 (429)
T ss_pred CCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccccc
Confidence 33344444566778999999999 8999998766554 9999999999999975
Q ss_pred -----------CcEECCCeEEccCCCcccceeeCCCeEEccCcE-----------EEcCC-cEEcCCccC
Q 013483 396 -----------NARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----------VILKN-SVITDGFVI 442 (442)
Q Consensus 396 -----------~~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------vi~~~-~~v~~~~~i 442 (442)
+|.||++|++.+ ..+.+.+.||+++.+..+.. +|+.| ++|+.++++
T Consensus 355 ~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 355 EREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 799999999965 45556667777777754432 25666 667776653
No 219
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.53 E-value=6.7e-07 Score=83.40 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=7.8
Q ss_pred eEeCCCcEECCCeEE
Q 013483 391 CIIDKNARIGKNVII 405 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~ 405 (442)
+.||++|.||.|+.+
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 455555555555554
No 220
>PLN02739 serine acetyltransferase
Probab=98.50 E-value=3.5e-07 Score=87.02 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=16.2
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
|.||.+++|. ++.||++|.||+|+++.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 5555555553 56666666666666664
No 221
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.50 E-value=4.2e-07 Score=89.98 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=50.5
Q ss_pred cCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCe
Q 013483 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 403 (442)
Q Consensus 325 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~ 403 (442)
...++++ .+.+.+|+||++|.|+++ .+.++++..+ |.|+++|+|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 3445555 335568899999999976 8887766554 999999999999999999999999
Q ss_pred EEcc
Q 013483 404 IIAN 407 (442)
Q Consensus 404 ~~~~ 407 (442)
.+.+
T Consensus 341 ~l~~ 344 (361)
T TIGR02091 341 VIRN 344 (361)
T ss_pred EEee
Confidence 9853
No 222
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.49 E-value=7.2e-07 Score=71.11 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=12.4
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
+.||++|.|+ ++.+..+++||+++.++
T Consensus 55 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~ 82 (101)
T cd03354 55 PTIGDNVVIGAGAKILGNITIGDNVKIG 82 (101)
T ss_pred CEECCCcEEcCCCEEECcCEECCCCEEC
Confidence 4455555554 34444444444444443
No 223
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.49 E-value=2.1e-07 Score=81.60 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=55.6
Q ss_pred CcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCC-Ccc-cceeeCCC
Q 013483 343 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSE-GIQ-EADRSAEG 420 (442)
Q Consensus 343 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~-~~~-~~~~~~~~ 420 (442)
++-|.|.++|+..+.++.. .+ ++||+- ++||++|.|..++.++... +.. .+..||||
T Consensus 148 gvdihpaa~ig~gilldha--------------tg--vvigeT-----Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~ 206 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHA--------------TG--VVIGET-----AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDN 206 (269)
T ss_pred cccccchhhcccceeeccc--------------cc--eeecce-----eEeccceeeecceeeccccccccccCCcccCC
Confidence 4567888999999888873 01 455554 4555555555555555432 222 24589999
Q ss_pred eEEccCcEE-----EcCCcEEcCCccC
Q 013483 421 FYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 421 ~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
++||.|++| ||+|++|++||+|
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceE
Confidence 999999998 9999999999975
No 224
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.48 E-value=6.6e-07 Score=72.15 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=18.5
Q ss_pred eeEEcCCcEECCCCEEec--eEEECCc
Q 013483 337 HSVVGIRSRINANVHLKD--TMMLGAD 361 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~--~~~~~~~ 361 (442)
+..||+++.|++++.|.+ .+.+|++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~ 29 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSD 29 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCC
Confidence 467889999999998864 4555555
No 225
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.48 E-value=7.4e-07 Score=71.95 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=8.5
Q ss_pred ceeeCCCeEEccCcEE
Q 013483 414 ADRSAEGFYIRSGVTV 429 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v 429 (442)
...++++++|+.++.|
T Consensus 76 ~~~ig~~~~i~~~~~v 91 (109)
T cd04647 76 GVTIGDGAVVGAGSVV 91 (109)
T ss_pred CCEECCCCEECCCCEE
Confidence 3445555555555444
No 226
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.47 E-value=6.7e-07 Score=88.25 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=12.5
Q ss_pred eEeCCC-cEeeeeEeCCCcEECCCeEEc
Q 013483 380 VGIGEN-TKIKECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~-~~i~~~~ig~~~~ig~~~~~~ 406 (442)
+.|+.+ +.+.+|+||++|+|++++.+.
T Consensus 311 ~~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 311 SVIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred CEEcCCcceeecCEEcCCCEECCCcccc
Confidence 344443 244445555555555554443
No 227
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.46 E-value=6.4e-07 Score=88.96 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=50.4
Q ss_pred eeEEcCCCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEEC
Q 013483 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 400 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig 400 (442)
+++|+++|. |++|+||++|.|+ +.+.+++++.+ |.|+++|.|.+|+|+++|.|+
T Consensus 278 p~~i~~~~~-----i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 278 PTYYAENSK-----VENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CcEEcCCCE-----EEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence 345555544 4589999999997 46888887666 999999999999999999999
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
+++.+.+
T Consensus 332 ~~~~i~~ 338 (369)
T TIGR02092 332 EGAHLEN 338 (369)
T ss_pred CCCEEEE
Confidence 9999975
No 228
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.46 E-value=1.3e-06 Score=77.30 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=8.7
Q ss_pred ceeeCCCeEEccCcEE
Q 013483 414 ADRSAEGFYIRSGVTV 429 (442)
Q Consensus 414 ~~~~~~~~~i~~~~~v 429 (442)
..+||+++.|++|++|
T Consensus 147 gv~IG~~~vIgagsvV 162 (183)
T PRK10092 147 GVTIGDNVVVASGAVV 162 (183)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555554
No 229
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.44 E-value=5.1e-07 Score=91.16 Aligned_cols=67 Identities=12% Similarity=0.263 Sum_probs=54.9
Q ss_pred eEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcc
Q 013483 333 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQ 412 (442)
Q Consensus 333 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~ 412 (442)
+.+.+|+||++|.| ++|.|++|++..+ |.||++|.|.+|+|+++|+||+++.+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~----- 377 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR----- 377 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee-----
Confidence 34568999999999 7999998776555 9999999999999999999999999964
Q ss_pred cceeeCCCeEEccC
Q 013483 413 EADRSAEGFYIRSG 426 (442)
Q Consensus 413 ~~~~~~~~~~i~~~ 426 (442)
+.|++++.|+++
T Consensus 378 --~ii~~~~~i~~~ 389 (425)
T PRK00725 378 --CVIDRGCVIPEG 389 (425)
T ss_pred --EEECCCCEECCC
Confidence 445555555555
No 230
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.42 E-value=1.1e-06 Score=76.35 Aligned_cols=66 Identities=26% Similarity=0.388 Sum_probs=38.4
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhh-hhhhhcCCCcceEeCCCcEe-eeeEeCCCcEECCCeEEcc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAE-VASLLAEGRVPVGIGENTKI-KECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~ig~~~~~~~ 407 (442)
..+||+.+.||+++.|..++.+|..- +++. -+-..+++ |.||+++.| ++-.||+|+.||+|+++..
T Consensus 87 GvVIgeta~IGddv~I~~gVTLGgtg--~~~g~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 87 GVVIGETAVIGDDVTIYHGVTLGGTG--KESGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred eEEEcceeEECCCeEEEcceEecCCC--CcCCCCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEcc
Confidence 45666666666666666666666531 0111 00111111 667777666 4777888888888887764
No 231
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.37 E-value=3.1e-06 Score=68.22 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred eEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEec
Q 013483 322 SIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~ 354 (442)
..||+++.|+ ++.+ ...+||++|.|++++.|..
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 4555555555 3444 2478888888888887753
No 232
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.7e-06 Score=85.20 Aligned_cols=52 Identities=29% Similarity=0.447 Sum_probs=30.4
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~ 406 (442)
..+||++|.|++++.|++.+++|++ |.||+++.|.+|+|.++|+|+.++.+.
T Consensus 261 p~~ig~~~~i~~~~~i~~~~~ig~~------------------~~I~~~~~i~~Sii~~~~~i~~~~~i~ 312 (358)
T COG1208 261 PVVIGPGAKIGPGALIGPYTVIGEG------------------VTIGNGVEIKNSIIMDNVVIGHGSYIG 312 (358)
T ss_pred CEEECCCCEECCCCEECCCcEECCC------------------CEECCCcEEEeeEEEcCCEECCCCEEe
Confidence 4555555555555555555555554 556666666666666666666655554
No 233
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.35 E-value=1.2e-06 Score=88.01 Aligned_cols=68 Identities=15% Similarity=0.385 Sum_probs=56.3
Q ss_pred EeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccc
Q 013483 335 IEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEA 414 (442)
Q Consensus 335 i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~ 414 (442)
++++.||++|.|+ ++.|+++++ |.+ |.|+++|.|.+|+|+++|+||+++++.+
T Consensus 313 ~~~~~ig~~~~I~-~~~i~~svI-g~~------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~------- 365 (407)
T PRK00844 313 AQDSLVSAGSIIS-GATVRNSVL-SPN------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR------- 365 (407)
T ss_pred EEeCEEcCCCEEC-CeeeEcCEE-CCC------------------CEECCCCEEeeeEECCCCEECCCCEEEe-------
Confidence 4689999999999 999998655 554 9999999999999999999999999965
Q ss_pred eeeCCCeEEccCcEE
Q 013483 415 DRSAEGFYIRSGVTV 429 (442)
Q Consensus 415 ~~~~~~~~i~~~~~v 429 (442)
..+++++.|++++.+
T Consensus 366 ~ii~~~~~i~~~~~i 380 (407)
T PRK00844 366 AILDKNVVVPPGATI 380 (407)
T ss_pred eEECCCCEECCCCEE
Confidence 456666666666544
No 234
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.35 E-value=1.6e-06 Score=87.87 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCEEeceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCC-----------
Q 013483 327 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK----------- 395 (442)
Q Consensus 327 ~~~i~~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~----------- 395 (442)
++.+.++.+.+|+|+++|.|+ ++.|+++++..+ |.||++|.|.+|+|..
T Consensus 305 ~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~~ 364 (436)
T PLN02241 305 PSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEIA 364 (436)
T ss_pred CcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCccccccccc
Confidence 344444556669999999999 999998755444 9999999999988844
Q ss_pred -----C---cEECCCeEEccCCCcccceeeCCCeEEccCcE-----EEcCCcEEcCC
Q 013483 396 -----N---ARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDG 439 (442)
Q Consensus 396 -----~---~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----vi~~~~~v~~~ 439 (442)
+ ++||+++.+.+ ..+.+.+.||+++.|+.+.. ++|+++.|+.|
T Consensus 365 ~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (436)
T PLN02241 365 SLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSG 420 (436)
T ss_pred cccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCC
Confidence 3 37999988864 23444455555555542222 25566666665
No 235
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.35 E-value=1.7e-05 Score=75.28 Aligned_cols=215 Identities=12% Similarity=0.133 Sum_probs=124.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccCh-hhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYNS-ASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~~-~~i~~~~~~~~~~~ 80 (442)
.++.+|+||||.||||+ .+.||.|+||....++++..+++++. .|. -..+|-+.... ++..+++++.. +.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-GV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-CC
Confidence 47889999999999997 88999999997655999999988865 243 36667776554 57788887632 11
Q ss_pred C-Ccc-cCCceEEEec------cc-ccCCcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHHHH
Q 013483 81 S-GVT-FGDGCVEVLA------AT-QTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (442)
Q Consensus 81 ~-~~~-~~~~~v~i~~------~~-~~~~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l 149 (442)
. ... |....+.-+. .. ....+.-.-.|.|.++...... ..++++...+.+++.+.+.|.+...-=..++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 1 100 1100000000 00 0000111123456655544332 2333333344689999999996543223678
Q ss_pred HHHHHcCCcEEEEEeecCCCcCCcccEEEE-cCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEEE
Q 013483 150 QNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLF 228 (442)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~-d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~~ 228 (442)
..+..+++++++-+.+...++ +.-|.+.. |..-+++++.+-|.+...+.. . .......++..+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~~~-----------~--~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEFK-----------S--IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHhhc-----------C--cccceEEEEeEEEE
Confidence 888889999998776654432 33455543 322245555554443211100 0 01224568889999
Q ss_pred eHHHHHHHHhh
Q 013483 229 KKEILLNLLRW 239 (442)
Q Consensus 229 ~~~~l~~~l~~ 239 (442)
+-++|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99988777654
No 236
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=2.7e-06 Score=81.95 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=48.4
Q ss_pred eEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEcc
Q 013483 333 SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 407 (442)
Q Consensus 333 ~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~ 407 (442)
+.+.+|.|+++|.|. | .+.+|++..+ +.|+++|+|.+|+|-++|.||+||++.+
T Consensus 292 s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~~l~~ 345 (393)
T COG0448 292 SEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGAVLRR 345 (393)
T ss_pred ceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCCEEEE
Confidence 345689999999998 5 8999988766 9999999999999999999999999975
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.18 E-value=6.8e-06 Score=69.95 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=14.8
Q ss_pred eEEcCCcEECC-CCEEec-eEEECCc
Q 013483 338 SVVGIRSRINA-NVHLKD-TMMLGAD 361 (442)
Q Consensus 338 ~~ig~~~~i~~-~~~i~~-~~~~~~~ 361 (442)
..||+++.|++ .+.+.. .+.+|++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~ 27 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKF 27 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCC
Confidence 46788888887 444443 4555655
No 238
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.17 E-value=1.4e-05 Score=68.06 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.4
Q ss_pred eeEEcCCcEECCCCEEece
Q 013483 337 HSVVGIRSRINANVHLKDT 355 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~ 355 (442)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 6788888888888888655
No 239
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.17 E-value=5.7e-06 Score=74.01 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=44.7
Q ss_pred eeEEcCCCEEe-ceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCC
Q 013483 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKN 396 (442)
Q Consensus 321 ~~~i~~~~~i~-~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 396 (442)
+..+|..|.++ .+.+ .+.+||+++.+++++.|......+.. .. ...+.....+.++||++
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~------~~----------~~~~~~~~~~~v~IG~~ 130 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF------VT----------ANIGALVGAGPVTIGED 130 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCCh------hh----------cccCCceecCCeEECCC
Confidence 45666777666 4432 45667777777777777654333321 00 01111122234555555
Q ss_pred cEECCCeEEccCCCcccceeeCCCeEEccCcEE
Q 013483 397 ARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 429 (442)
Q Consensus 397 ~~ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 429 (442)
|-||.++++.. ..+||+|+.||+|++|
T Consensus 131 vwIG~~a~Ilp------GV~IG~gavigagsVV 157 (190)
T COG0110 131 VWIGAGAVILP------GVTIGEGAVIGAGSVV 157 (190)
T ss_pred eEEcCccEECC------CEEECCCcEEeeCCEE
Confidence 55555555543 2455555556666555
No 240
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.15 E-value=2.4e-05 Score=78.37 Aligned_cols=96 Identities=21% Similarity=0.368 Sum_probs=61.4
Q ss_pred CeEEEEcCCeeeecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCC---------ceEEEEeCCCccccccc
Q 013483 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDLKAM 200 (442)
Q Consensus 130 ~~~lv~~gD~i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~---------~v~~i~ek~~~~~~~~~ 200 (442)
.-++|..+|++....-...+ .+. +.+++++..+.+..-....|+...|+++ .+.++..||.......
T Consensus 54 pGv~V~s~D~vl~~~~~~~~-~~~--~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~- 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLI-DWD--EPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA- 129 (414)
T ss_pred cceEEEecccccccCccccC-CCC--CCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh-
Confidence 35899999943322211112 122 3667888888776667889999999888 7999999998765310
Q ss_pred ccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 201 AVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
............++|++.|+.+....++.
T Consensus 130 ---------~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 ---------SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred ---------CCcccCCCcccccccceeccHHHHHHHHH
Confidence 00111112345589999999887766554
No 241
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.13 E-value=5.6e-05 Score=75.39 Aligned_cols=218 Identities=19% Similarity=0.261 Sum_probs=119.2
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhh----cCC-cEEEEEeccC-hhhHHHHHHhhccC
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYN-SASLNRHLARAYNY 79 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~-~~~i~~~~~~~~~~ 79 (442)
..++.+|+||||.||||+ .+.||.++||....++++..++++.. .|. -..+|.+... +++..+++++.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 467899999999999998 78999999997765888888887765 343 3667777655 45888888873322
Q ss_pred CCCccc-CCceEEEecccccCC-c-CC------Ccc-ccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeeecCHHH
Q 013483 80 GSGVTF-GDGCVEVLAATQTPG-E-AG------KRW-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (442)
Q Consensus 80 ~~~~~~-~~~~v~i~~~~~~~~-~-~~------~~~-~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (442)
.....+ ....+..+..+.... + .. ..| |.|.|+...... ..++++...+.+++.+.+.|.+...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 211111 111111111111000 0 00 011 346666443332 23333333346899999999955443346
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCCCceEEEEeCCCcccccccccccccccccccccccccceeeeeEEE
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy~ 227 (442)
++..+...+.++.+-+.+...++ ..-|.++. .+|+.. +.|...-+....... . ......+.+++--.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~-~~G~~~-vvEysqip~~~~~~~---------~-~~~~~~~FntnNi~ 277 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSPD-EKGGVLCR-YDGKLQ-VVEYSQIPKEHMAEF---------K-DIKGFLLFNTNNIW 277 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEE-ETTEEE-EEEGGGS-HHGHHHH---------T-STTTSBEEEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCCC-CceeEEEE-eCCccE-EEEeccCCHHHHHhh---------h-ccccceEEEeceee
Confidence 78888888999888777764432 33455554 245432 334333222100000 0 00012455778779
Q ss_pred EeHHHHHHHHhh
Q 013483 228 FKKEILLNLLRW 239 (442)
Q Consensus 228 ~~~~~l~~~l~~ 239 (442)
|+-+.++++++.
T Consensus 278 ~~l~~l~~~~~~ 289 (420)
T PF01704_consen 278 FSLDFLKRLLER 289 (420)
T ss_dssp EEHHHHHHHHHT
T ss_pred EEHHHHHHHHHh
Confidence 999999887764
No 242
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.07 E-value=3.1e-05 Score=70.78 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=75.6
Q ss_pred EEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCce
Q 013483 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (442)
Q Consensus 11 aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (442)
|||+|.+.++|+. .|.|.+++|+ |||+|+++.+.+++ +++|+|.| ..+++.+.+.+ ++.+
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~---~g~~------- 62 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE---YGAK------- 62 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH---TTSE-------
T ss_pred EEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH---cCCe-------
Confidence 8999999999996 7999999999 99999999999975 68988877 45566666654 2211
Q ss_pred EEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
+...+.... .++......+...... ..+.++.+.||. +.+.. +.++++.+.+...+
T Consensus 63 v~~~~~~~~---------~~~~r~~~~~~~~~~~----~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFIEAIKHFLAD----DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EEE--TTSS---------SHHHHHHHHHHHHTCS----TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred eEEcChhhc---------CCcccHHHHHHHhhhh----HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 211111111 2343333333333321 124789999999 55544 78899988888765
No 243
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=8.4e-05 Score=73.29 Aligned_cols=213 Identities=18% Similarity=0.276 Sum_probs=121.2
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec-Cccceehhhhhhhhhc----CC-cEEEEEeccChhhHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GI-NKVYILTQYNSASLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~-g~~pli~~~l~~l~~~----gi-~~i~iv~~~~~~~i~~~~~~~~~~~ 80 (442)
.++.+|+||||+||||+ ..-||.+++|. |+ ++++.+.+.++.+ ++ -..+|-+....++-..++...-.++
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFG 179 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcC
Confidence 57889999999999999 88899999999 56 9999998887653 44 2566667666644444543321122
Q ss_pred C-C--ccc-CCceEE-EecccccC--CcCC---CccccChHHHHHHhhh--hhcCCCCCccCeEEEEcCCeeeecCH-HH
Q 013483 81 S-G--VTF-GDGCVE-VLAATQTP--GEAG---KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDY-MD 147 (442)
Q Consensus 81 ~-~--~~~-~~~~v~-i~~~~~~~--~~~~---~~~~~G~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l-~~ 147 (442)
. + +.+ ...... ++.....+ ..++ .-.|.|.|+-...... .++++...+.+.+.|.+.|.+ ...+ -.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL-~~~vD~~ 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNL-GATVDLK 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEeccccc-ccccCHH
Confidence 1 1 111 111111 11111110 0011 1224565554433322 344333345689999999993 3333 26
Q ss_pred HHHHHHHcCCcEEEEEeecCCCcCCcccEEE-EcCCCceEEEEeCCCcccccccccccccccccccccccccceee-eeE
Q 013483 148 FVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MGV 225 (442)
Q Consensus 148 ~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~-~d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi 225 (442)
++.++..++.+.++-+.....+ ...-|.+. .|+.-+|+.+.+-|.....+.. ..........+ .++
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-----------s~~~~~~~n~Nni~l 326 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-----------SDGKLKYFNTNNIWL 326 (472)
T ss_pred HHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-----------cccceeeecccccee
Confidence 7888888899888877664443 24456655 5656677777776653211000 00000112234 788
Q ss_pred EEEeHHHHHHH
Q 013483 226 YLFKKEILLNL 236 (442)
Q Consensus 226 y~~~~~~l~~~ 236 (442)
|+++.+++.+.
T Consensus 327 ~~~~~~~l~~~ 337 (472)
T COG4284 327 HLFSVKFLKEA 337 (472)
T ss_pred ehhHHHHHHhh
Confidence 98888877554
No 244
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.02 E-value=9.9e-05 Score=74.43 Aligned_cols=216 Identities=18% Similarity=0.212 Sum_probs=121.5
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc--------------CC-cEEEEEeccCh-
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GI-NKVYILTQYNS- 66 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~--------------gi-~~i~iv~~~~~- 66 (442)
..++.+|+||||+||||+ .+.||.|++|+ ++ ++++...+++... +. -..+|.+....
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 357889999999999999 88999999775 56 8999998886431 11 24567776544
Q ss_pred hhHHHHHHhhccCCCCcccCCceEEEecccccC------------CcCCCccccChHHHHHHhhh--hhcCCCCCccCeE
Q 013483 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTP------------GEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDV 132 (442)
Q Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~------------~~~~~~~~~G~~~al~~~~~--~l~~~~~~~~~~~ 132 (442)
++..+++++.-.|+-.. ..|.+......+ ...-...|.|.|+....... .++++...+.+++
T Consensus 190 ~~T~~ff~~~~~FGl~~----~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi 265 (493)
T PLN02435 190 EATRKFFESHKYFGLEA----DQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYV 265 (493)
T ss_pred HHHHHHHHhCCCCCCCc----cceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEE
Confidence 57788887532233111 112111100000 00011235577666554332 3443333446789
Q ss_pred EEEcCCeee-ecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE-cCCCceEEEEeCCCccccccccccccccccc
Q 013483 133 LILSGDHLY-RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLS 210 (442)
Q Consensus 133 lv~~gD~i~-~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~-d~~~~v~~i~ek~~~~~~~~~~~~~~~~~~~ 210 (442)
.+.+.|.+. ...--.++-.+...+.++.+-+.+...+ .+.-|.++. +.+|+.. +.|...-+...+-. ..
T Consensus 266 ~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~-vvEYsEl~~~~~~~-------~~ 336 (493)
T PLN02435 266 DCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLT-VVEYSELDQAMASA-------IN 336 (493)
T ss_pred EEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEE-EEEeccCCHHHHhc-------cC
Confidence 999999954 3333466778888889988876654332 234466654 2455432 44443322110000 00
Q ss_pred ccccccccceeeeeEEEEeHHHHHHHHh
Q 013483 211 KQEAEEKPYIASMGVYLFKKEILLNLLR 238 (442)
Q Consensus 211 ~~~~~~~~~l~~~Giy~~~~~~l~~~l~ 238 (442)
+......-+..++..++|+.++|.++.+
T Consensus 337 ~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 337 QQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ccccccccchhhHHHhhccHHHHHHHHH
Confidence 0000012245678899999999987653
No 245
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.98 E-value=0.0001 Score=70.28 Aligned_cols=221 Identities=14% Similarity=0.120 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCCCcccccCCCccceee---cCccceehhhhhhhhhcC---------CcEEEEEeccCh-hhHHHHHHhh
Q 013483 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG---------INKVYILTQYNS-ASLNRHLARA 76 (442)
Q Consensus 10 ~aVILAaG~gtRl~plt~~~pK~Llpi---~g~~pli~~~l~~l~~~g---------i~~i~iv~~~~~-~~i~~~~~~~ 76 (442)
.+|+||||+||||+ .+.||.++|+ .++ ++++..++++.+.. .-.++|.+.... ++..+++++.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999998 8899999999 467 99999998886632 135677777544 5778888753
Q ss_pred ccCCCC---cc-cCCceEEEecccccC-------CcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcCCe-eee
Q 013483 77 YNYGSG---VT-FGDGCVEVLAATQTP-------GEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDH-LYR 142 (442)
Q Consensus 77 ~~~~~~---~~-~~~~~v~i~~~~~~~-------~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~-i~~ 142 (442)
-.|+-. .. |....+..+...... ...-...|.|.|+...... ..++++...+.+++.+..-|. +..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 223311 11 111111111100000 0011123567776655443 233333334457788888887 443
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE--cCCCceE-EEEeCCCcccc-ccccccccccccccccccccc
Q 013483 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGRVL-SFSEKPKGKDL-KAMAVDTTVLGLSKQEAEEKP 218 (442)
Q Consensus 143 ~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~~~v~-~i~ek~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (442)
...-.++-.+..++.++...+.+... .+.-|.++. ..+|+-. ...|+..-+.. +....+..- .. .....+.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~--~~-~~~~~s~ 232 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGD--VD-DKTGFSP 232 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCC--cc-ccccccc
Confidence 33345566666777887766655332 356776653 2334321 11333322210 000000000 00 0000122
Q ss_pred ceeeeeEEEEeHHHHHHHHhh
Q 013483 219 YIASMGVYLFKKEILLNLLRW 239 (442)
Q Consensus 219 ~l~~~Giy~~~~~~l~~~l~~ 239 (442)
.-.+++.++|+-+.+.+.+++
T Consensus 233 f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 233 FPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred CCCeeeeEEEeHHHHHHHHhh
Confidence 356889999998888777764
No 246
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.98 E-value=3.2e-05 Score=69.14 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=30.6
Q ss_pred eEeCCCcEee-eeEeCCCcEECCCeEEccC-CCcccceeeCCCeEEccCcEE-----EcCCcEEcCCccC
Q 013483 380 VGIGENTKIK-ECIIDKNARIGKNVIIANS-EGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 442 (442)
Q Consensus 380 ~~i~~~~~i~-~~~ig~~~~ig~~~~~~~~-~~~~~~~~~~~~~~i~~~~~v-----i~~~~~v~~~~~i 442 (442)
+.||+++.+. ++.|..+.+.......... ....+..+||+++|||.+++| ||++++||+||++
T Consensus 88 i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVV 157 (190)
T COG0110 88 ITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVV 157 (190)
T ss_pred eEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEE
Confidence 4455555544 3444444333332222221 111123466666666666665 6666666666653
No 247
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.91 E-value=4.3e-05 Score=81.54 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.9
Q ss_pred eeEEcCCCEEeceEE---eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCC
Q 013483 321 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 396 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i---~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~ 396 (442)
.+.||++|.|+...+ ...+||++|.|++++.|.+..+-++... ..|+.||++|.|+ +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~-------------~g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLH-------------TGPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCcee-------------ecCcEECCCcEECCCCEEcCC
Confidence 456777777764333 3467888888888888765432221100 0126777777776 6777777
Q ss_pred cEECCCeEEccCCCcccceeeCCC-eEEccCcEEEcC
Q 013483 397 ARIGKNVIIANSEGIQEADRSAEG-FYIRSGVTVILK 432 (442)
Q Consensus 397 ~~ig~~~~~~~~~~~~~~~~~~~~-~~i~~~~~vi~~ 432 (442)
++||++++++....+.+...+.++ .+.|+-+..+|+
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 777777777766555553333333 333555555544
No 248
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.88 E-value=0.00072 Score=73.49 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=113.3
Q ss_pred eEEEEcCCeeeecC--HHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEEcCC--CceEEEEeCCCccccccccccccc
Q 013483 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 206 (442)
Q Consensus 131 ~~lv~~gD~i~~~~--l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~--~~v~~i~ek~~~~~~~~~~~~~~~ 206 (442)
.++|..||.+...+ +.+ ...++++.+....+..-....|++..|++ +++..+..||...+...+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~------ 221 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGL------ 221 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhh------
Confidence 78999999854433 211 22355566555555545688999998876 688889999987653211
Q ss_pred ccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC----C--cccccchhhhccc----------ccceEEEEec-ce
Q 013483 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT----A--NDFGSEIIPASAN----------EQFLKAYLFN-DY 269 (442)
Q Consensus 207 ~~~~~~~~~~~~~l~~~Giy~~~~~~l~~~l~~~~~~----~--~~~~~~~l~~~i~----------~~~i~~~~~~-g~ 269 (442)
......+.++|+|+|+.+....+++....+ . .++-.|++..+-. +.++..+.++ +.
T Consensus 222 -------~~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 222 -------SKTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred -------hcCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 111235779999999999877666553221 1 1222344433322 2445555554 67
Q ss_pred eeecCChHHHHHHhhhhhcCCCC-ccccCCCCcccccCccCCCceecCCceeeeEEcCCCEEe-c-eEEeeeEEcCCcEE
Q 013483 270 WEDIGTIRSFFEANLALTAHPPM-FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-S-SFIEHSVVGIRSRI 346 (442)
Q Consensus 270 ~~di~t~~~~~~an~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~i~~~~~i~-~-~~i~~~~ig~~~~i 346 (442)
|+-+||-++|+.....+-+.... ..++.. +..-.+ + +.+.++.++.++.++ . ..|++|.||.++.|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~------~~~~~~-~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVTDQRRIMHR------KVKPHP-A----MFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhhhhhhhhcc------ccCCCC-c----eEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 99999999988643333221100 011111 111111 1 234467777777777 3 22467777777777
Q ss_pred CCCCEEeceE
Q 013483 347 NANVHLKDTM 356 (442)
Q Consensus 347 ~~~~~i~~~~ 356 (442)
+.++.|...-
T Consensus 364 g~~~Iisgv~ 373 (974)
T PRK13412 364 ASRSIITGVP 373 (974)
T ss_pred cCCcEEeccc
Confidence 7777776553
No 249
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.75 E-value=3.7e-05 Score=63.19 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=37.8
Q ss_pred ccCccCCCcee-cCCcee-eeEEcCCCEEe-ceEE----eeeEEcCCcEECCCCEEec
Q 013483 304 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI----EHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 304 ~~~~~~~~~~i-~~~~i~-~~~i~~~~~i~-~~~i----~~~~ig~~~~i~~~~~i~~ 354 (442)
.+++|.|.+++ ..+.+. +.+|+++|+|. .+.+ ..-+||+++.|.+.+.|.+
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 34677777777 444554 78999999998 5555 3478999999999888865
No 250
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.67 E-value=7.3e-05 Score=69.92 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=53.9
Q ss_pred eeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCcccce
Q 013483 336 EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEAD 415 (442)
Q Consensus 336 ~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~~~~~ 415 (442)
++|.||+++.||++++|++.+.+.+.. ..+. ..++.++.|..|++|.++.||.++.+-+...+.+++
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~---------il~~----~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDST---------ILGA----DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeE---------EEcc----ceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 467788778888888887777776631 1111 456667777788888888888888887766666666
Q ss_pred eeCCCeEEccC
Q 013483 416 RSAEGFYIRSG 426 (442)
Q Consensus 416 ~~~~~~~i~~~ 426 (442)
.|.+.-++.++
T Consensus 342 ~V~d~~~vn~g 352 (371)
T KOG1322|consen 342 IVADEDYVNEG 352 (371)
T ss_pred EEecccccccc
Confidence 66655555555
No 251
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00017 Score=66.52 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=37.0
Q ss_pred ccCCCCcccccCccCCCcee-------cCCceeeeEEcCCCEEe-ceEEeeeEEcCCcEECCCCEEec
Q 013483 295 FYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 354 (442)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i-------~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~ 354 (442)
+++|++.++++++|+|.+.| +|+++.+++|-++|+|. ++.+-+|+||-+|.||.-++++.
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecc
Confidence 44555555555555554443 35555667777777777 56666777777777776666544
No 252
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00056 Score=60.67 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=77.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhcC-CcEEEEEeccCh--hhHHHHHHhhccCCCCc
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGV 83 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~ 83 (442)
+++-+||=|.=.+|||. -|.|+|++++ |||.++|++++.+. +++++|.|.-+. +.+.++.... |
T Consensus 2 ~~I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G- 68 (241)
T COG1861 2 SMILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G- 68 (241)
T ss_pred CcEEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C-
Confidence 34445555555567775 6999999999 99999999999976 588888887544 3555555321 1
Q ss_pred ccCCceEEEecccccCCcCCCccccC-hHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHHHcCCc
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQG-TADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G-~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~~~~~~ 158 (442)
+.+. .| ..+.|......++.. ..+.++=+.||. +.+.. ++..++.|.+++++
T Consensus 69 ------~~vf--------------rGs~~dVL~Rf~~a~~a~---~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 ------FYVF--------------RGSEEDVLQRFIIAIKAY---SADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred ------eeEe--------------cCCHHHHHHHHHHHHHhc---CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 1121 13 345555555555542 145788889999 55555 47888989888765
No 253
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00016 Score=63.84 Aligned_cols=60 Identities=30% Similarity=0.386 Sum_probs=38.2
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCCeEEc
Q 013483 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIA 406 (442)
Q Consensus 337 ~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~~~~~ 406 (442)
..+||+-.+||.++.|-+.+.+|..+ ...+.|.| .||+||.|+ .+.|-.|+.||+|++|+
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggtg---------k~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIa 228 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGTG---------KGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIA 228 (269)
T ss_pred ceeecceeEeccceeeecceeecccc---------ccccccCC-cccCCeEEccccEEeCCeeECCCcEEe
Confidence 57888888888888888888888742 23445666 666666664 33344444444444444
No 254
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.59 E-value=0.0012 Score=68.68 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=100.7
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeec---Cccceehhhhhhhhhc-----------C-CcEEEEEeccCh-hhHH
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS-----------G-INKVYILTQYNS-ASLN 70 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~---g~~pli~~~l~~l~~~-----------g-i~~i~iv~~~~~-~~i~ 70 (442)
.++.+|+||||.||||+ ...||.++|++ |+ ++++..++++... + .-..+|.+.... +...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 57889999999999998 88999999983 57 9999999887654 1 135677777554 5777
Q ss_pred HHHHhhccCCCC---ccc-CCceEEEeccc-cc----C--CcCCCccccChHHHHHHhh--hhhcCCCCCccCeEEEEcC
Q 013483 71 RHLARAYNYGSG---VTF-GDGCVEVLAAT-QT----P--GEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSG 137 (442)
Q Consensus 71 ~~~~~~~~~~~~---~~~-~~~~v~i~~~~-~~----~--~~~~~~~~~G~~~al~~~~--~~l~~~~~~~~~~~lv~~g 137 (442)
+++++.-.|+-. ..+ ....+..+... .. . ...-...|.|.++...... ..++++...+.+++.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 788764323211 111 11111111000 00 0 0011123556666554443 3344443345678999999
Q ss_pred Ce-eeecCHHHHHHHHHHcCCcEEEEEeecCCCcCCcccEEEE
Q 013483 138 DH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI 179 (442)
Q Consensus 138 D~-i~~~~l~~~l~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~ 179 (442)
|. +.....-.++..+...+.++.+.+.+... ...-|.++.
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~ 323 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAK 323 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEE
Confidence 99 33333467788888888888887776532 355666664
No 255
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.55 E-value=0.00021 Score=76.30 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=45.8
Q ss_pred eeEEcCCCEEeceEEeeeEE-cCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCc-EeeeeEeCCCcE
Q 013483 321 DSIISHGSFITSSFIEHSVV-GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT-KIKECIIDKNAR 398 (442)
Q Consensus 321 ~~~i~~~~~i~~~~i~~~~i-g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~i~~~~ig~~~~ 398 (442)
++.||+++.++.. .++ .+.+.||++|.|++.+.+..+. ..++. .+.+++||++|.
T Consensus 597 Ga~IG~~v~i~~~----~~~~~dlv~IGd~~~I~~~~~i~~h~-------------------~~~~~~~~~~v~IG~~~~ 653 (695)
T TIGR02353 597 GVKIGRGVYIDGT----DLTERDLVTIGDDSTLNEGSVIQTHL-------------------FEDRVMKSDTVTIGDGAT 653 (695)
T ss_pred CCEECCCeEECCe----eccCCCCeEECCCCEECCCCEEEecc-------------------ccccccccCCeEECCCCE
Confidence 3556666666531 222 2336888888887777665421 11111 123455555555
Q ss_pred ECCCeEEccCCCcccceeeCCCeEEccCcEEEcCCcEEcCCc
Q 013483 399 IGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 440 (442)
Q Consensus 399 ig~~~~~~~~~~~~~~~~~~~~~~i~~~~~vi~~~~~v~~~~ 440 (442)
||+++++.. ..+||+++.||+++.| .++..|++|+
T Consensus 654 IG~~a~V~~------g~~IGd~a~Ig~~SvV-~~g~~vp~~s 688 (695)
T TIGR02353 654 LGPGAIVLY------GVVMGEGSVLGPDSLV-MKGEEVPAHT 688 (695)
T ss_pred ECCCCEECC------CCEECCCCEECCCCEE-cCCcccCCCC
Confidence 555555542 3345555666666444 3444555554
No 256
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.52 E-value=0.00013 Score=60.02 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=40.4
Q ss_pred eEEcCCCEEe-ceEE-eeeEEcCCcEECCCCEE---eceEEECCccccchh-hhhhhhcC------CCcceEeCCCcEe
Q 013483 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHL---KDTMMLGADFYETDA-EVASLLAE------GRVPVGIGENTKI 388 (442)
Q Consensus 322 ~~i~~~~~i~-~~~i-~~~~ig~~~~i~~~~~i---~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~i~~~~~i 388 (442)
.-|.+.+++- .+.| .+.+|+++|+|.|.+++ ...+++|.++.+-+. ...+++-+ +.+|..||.+.+.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 3455566655 5566 46788888888888877 345666766665554 33333332 1245677776555
No 257
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.49 E-value=0.00056 Score=55.95 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=15.4
Q ss_pred eeEEcCCcEEC---CCCEEeceEEECCccccch
Q 013483 337 HSVVGIRSRIN---ANVHLKDTMMLGADFYETD 366 (442)
Q Consensus 337 ~~~ig~~~~i~---~~~~i~~~~~~~~~~~~~~ 366 (442)
.++|-+++.|. .+++++.-++++.+++||+
T Consensus 39 KtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRP 71 (184)
T KOG3121|consen 39 KTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRP 71 (184)
T ss_pred cEEEeeCcEEecccccceEcceEEeccccccCC
Confidence 34444444444 3455555555555555555
No 258
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.39 E-value=0.00066 Score=59.98 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCccceeecC--ccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcc
Q 013483 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (442)
Q Consensus 29 ~pK~Llpi~g--~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (442)
.+|+|+++.| + |||+|+++.+. ..+++++|+++... .+ .. . + +.++..... |
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~---~--~-------~~~i~d~~~----g--- 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE---L--P-------APVLRDELR----G--- 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc---C--C-------CCEeccCCC----C---
Confidence 5899999999 9 99999999766 45899999987532 11 00 0 1 122221111 1
Q ss_pred ccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eeecC-HHHHHHHHH
Q 013483 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (442)
Q Consensus 107 ~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~~~ 153 (442)
.|...++..+...... ...+.++|++||+ ++..+ +.++++.+.
T Consensus 57 -~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 57 -LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred -CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 3566655544433210 0147999999999 65655 566666543
No 259
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.33 E-value=0.00089 Score=59.50 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=43.0
Q ss_pred cCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEECCC
Q 013483 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKN 402 (442)
Q Consensus 325 ~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig~~ 402 (442)
..++.|+ ++.++..++|+...+++++.|...++.++ +.|+..|.+. |.+.+.++.||.+
T Consensus 20 ~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiGE~ 80 (277)
T COG4801 20 KGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIGEF 80 (277)
T ss_pred eccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEecc
Confidence 3333333 33344557777777777777777777655 7788888775 6777777777777
Q ss_pred eEEcc
Q 013483 403 VIIAN 407 (442)
Q Consensus 403 ~~~~~ 407 (442)
+.|..
T Consensus 81 ~sI~g 85 (277)
T COG4801 81 SSIKG 85 (277)
T ss_pred ceeee
Confidence 77764
No 260
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.23 E-value=0.00035 Score=43.91 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=5.7
Q ss_pred eEeCCCcEECCCeEE
Q 013483 391 CIIDKNARIGKNVII 405 (442)
Q Consensus 391 ~~ig~~~~ig~~~~~ 405 (442)
++||++|.|++++++
T Consensus 20 ~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 20 VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEE-TTEEEETTEEE
T ss_pred CEECCCCEEcCCCEE
Confidence 334444444444433
No 261
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.18 E-value=0.0016 Score=57.88 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=37.5
Q ss_pred EEcCCCEEe-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEee-eeEeCCCcEEC
Q 013483 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 400 (442)
Q Consensus 323 ~i~~~~~i~-~~~i~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~ig 400 (442)
++++...++ .+.|...+++.+++|+..|.++.+++++++ .+||+.+.|+ .-++..+-.||
T Consensus 35 V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdig 96 (277)
T COG4801 35 VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDIG 96 (277)
T ss_pred eeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEecccccc
Confidence 444444444 444445566666666666666666666665 5666666664 34444555555
Q ss_pred CCeEEcc
Q 013483 401 KNVIIAN 407 (442)
Q Consensus 401 ~~~~~~~ 407 (442)
+++.|.+
T Consensus 97 ~dV~Ieg 103 (277)
T COG4801 97 ADVIIEG 103 (277)
T ss_pred cceEEec
Confidence 5555543
No 262
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.05 E-value=0.00073 Score=42.44 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=7.8
Q ss_pred EEcCCcEECCCCEEeceEEEC
Q 013483 339 VVGIRSRINANVHLKDTMMLG 359 (442)
Q Consensus 339 ~ig~~~~i~~~~~i~~~~~~~ 359 (442)
.||+++.|++++.|.+.+.+|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig 23 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIG 23 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-
T ss_pred EEcCCCEECCCcEecCCCEEC
Confidence 333444444444433333333
No 263
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.37 E-value=0.0044 Score=38.35 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.0
Q ss_pred EEcCCcEECCCCEE
Q 013483 339 VVGIRSRINANVHL 352 (442)
Q Consensus 339 ~ig~~~~i~~~~~i 352 (442)
.||++|.|++++.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 45555555555554
No 264
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.87 E-value=1 Score=44.16 Aligned_cols=155 Identities=15% Similarity=0.287 Sum_probs=85.6
Q ss_pred cceEEEEEeCCCCCCCcccccCCCccceeecCccceehhhhhhhhhc----CCc-EEEEEeccChh-hHHHHHHhhccCC
Q 013483 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS----GIN-KVYILTQYNSA-SLNRHLARAYNYG 80 (442)
Q Consensus 7 ~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~~----gi~-~i~iv~~~~~~-~i~~~~~~~~~~~ 80 (442)
.++..+=|-||.|+-|+ ...||.++++-+..++++.++.+.... +++ ..++......+ +-.+.+++.. +
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~--~ 176 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA--G 176 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc--C
Confidence 46678889999999999 889999999998768888777665543 333 44444555544 4444554432 1
Q ss_pred CC--------cccCCceE-EEecccccCCc-CCCccc-cChHHHHHHhh--hhhcCCCCCccCeEEEEcCCeeee-cCHH
Q 013483 81 SG--------VTFGDGCV-EVLAATQTPGE-AGKRWF-QGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYR-MDYM 146 (442)
Q Consensus 81 ~~--------~~~~~~~v-~i~~~~~~~~~-~~~~~~-~G~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~-~~l~ 146 (442)
.. .+|+.-.. ..++......+ ....|+ .|.++-..... ..+++....+.+.+.|-+.|.+.. .||
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL- 255 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL- 255 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-
Confidence 11 12221101 11221111111 222333 46655443322 223222223468899999999764 455
Q ss_pred HHHHHHHHcCCcEEEEEeecC
Q 013483 147 DFVQNHRQSGADITISCLPMD 167 (442)
Q Consensus 147 ~~l~~~~~~~~~~tl~~~~~~ 167 (442)
.++++....+....|-+++..
T Consensus 256 ~ILn~~i~~~~ey~MEvTdKT 276 (498)
T KOG2638|consen 256 NILNHVINNNIEYLMEVTDKT 276 (498)
T ss_pred HHHHHHhcCCCceEEEecccc
Confidence 445555555666666665543
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.00 E-value=0.059 Score=48.17 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=56.4
Q ss_pred ceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhhh
Q 013483 41 RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120 (442)
Q Consensus 41 pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~ 120 (442)
||++|+++.+...++++++++++. +++.++... + + ++++.... .|.+.+++.+.+.
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~----~-------v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L----G-------APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c----C-------CEEEecCC----------CCHHHHHHHHHHH
Confidence 899999999999887888888763 334433321 1 1 22332111 2889999999887
Q ss_pred hcCCCCCccCeEEEEcCCe-eeec-CHHHHHHHHH
Q 013483 121 FEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 153 (442)
Q Consensus 121 l~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~~~ 153 (442)
+.. ..+.+++++||+ ++.. .+.++++.++
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 135899999999 4444 4677777653
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.74 E-value=0.41 Score=39.49 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=66.3
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|..|+.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566665589999999999987 7889999887777666666554311 000 11111111 2588
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH-HHHHHHHH
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHR 153 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~~~ 153 (442)
+.++..+..... .+.++++.+|.++..+. ..++..+.
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 889988887775 48999999999887774 45434433
No 267
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.90 E-value=1 Score=37.95 Aligned_cols=109 Identities=12% Similarity=0.148 Sum_probs=70.3
Q ss_pred ceeecCccceehhhhhhhhhc--CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|+...|..+|+.+.+. ...+|+|+-+...+...+.+.+... .. ..++++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~--~~-----~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE--SD-----PNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC--CS-----TTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc--cc-----ccccccccccc---------ccc
Confidence 467777656888889888776 4567877776554455555554321 01 11445543332 488
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
+.++..+..... .+.++++..|.++..+ +.++++.+.+.+.++.+..
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 889988888887 4799999999988887 7888888887666554443
No 268
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.81 E-value=0.8 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=16.5
Q ss_pred ccceEEEEec-ceeeecCChHHHHHH
Q 013483 258 EQFLKAYLFN-DYWEDIGTIRSFFEA 282 (442)
Q Consensus 258 ~~~i~~~~~~-g~~~di~t~~~~~~a 282 (442)
+..+..+..+ +.++-++|-.+|++-
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~ 251 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEH 251 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHh
Confidence 3455555554 678888888777665
No 269
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.56 E-value=7 Score=32.78 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=63.6
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|+..++..+++.+.+.. ..+++|+.....+...+.+.+.. . .+.++.... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~---~-------~~~~~~~~~---------~~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF---P-------EVRLIRNGE---------NLGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC---C-------CeEEEecCC---------CcCh
Confidence 3566676568888898887753 45777777655555555554422 1 133332211 1588
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
+.++..+..... .+.++++..|..+..+ +..+++.....
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 888888887775 4899999999987766 56666654443
No 270
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.51 E-value=7.6 Score=35.15 Aligned_cols=97 Identities=11% Similarity=0.207 Sum_probs=62.2
Q ss_pred ceeecCcc-ceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 33 AVPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 33 Llpi~g~~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
++|.-|.. +.+..+|+.+.+....+++||.....+...+.+...... ..+.+..... .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--------~~~~v~~~~~----------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--------GGIFVITVPH----------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--------CcEEEEecCC----------CChH
Confidence 45666664 678888888877655688888776666555554322110 0133332111 3677
Q ss_pred HHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
.++..+..... .+.++++.+|..+..+ +.++++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 78877766654 4899999999988877 677777655
No 271
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.64 E-value=8.1 Score=35.16 Aligned_cols=105 Identities=9% Similarity=0.162 Sum_probs=63.5
Q ss_pred ceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcccc
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (442)
++|.-|..+.+..+++.+.+... -+++|+-+...++..+.++... ... ..+.++.... .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~--~~~-----~~v~~i~~~~----------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA--AKD-----PRIRLIDNPK----------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH--hcC-----CeEEEEeCCC----------C
Confidence 35556654677778888876543 3777777666555555554422 110 1133432221 2
Q ss_pred ChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 109 G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
|-+.++..+.+..+ .+.++++.+|.....+ +.++++.++..+.++.
T Consensus 68 ~~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 68 IQSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred CchHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 56677777776665 4899999999977666 6788876655555443
No 272
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=84.27 E-value=7.6 Score=33.51 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=63.1
Q ss_pred eeecCccceehhhhhhhhhc----CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 34 VPIGGAYRLIDVPMSNCINS----GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
+|..+....+..+|+.+.+. ...+|+|+-+...+...+.+.+... ++. .+.++...+. .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~-----~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA-----RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH-----hCC--CeEEEEccCC---------CC
Confidence 45555534566677777665 3567777766554444444433210 111 1233332332 47
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEE
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.+.++..+..... .+.++++.+|.....+ +.+++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 7888888777666 3899999999966655 777887655555554433
No 273
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=82.50 E-value=16 Score=32.70 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=62.0
Q ss_pred ceeecCccceehhhhhhhhhcC---CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG---INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g---i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
++|.-|....|..+|+.+.+.- .-+|+||-+...+...+.+.+.. ... ..+.++..... .|
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~--~~~-----~~i~~~~~~~n---------~G 65 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA--KEY-----PRVRLIVRPGK---------RG 65 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH--HhC-----CceEEEecCCC---------CC
Confidence 3566666456777777776642 35777776544443333333211 000 01333332222 48
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
-+.++..+..... .+.++++.+|.....+ +..+++.....+.++.
T Consensus 66 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 66 LGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred hHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 8889988887766 3788999999976655 6777776555555543
No 274
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=82.07 E-value=14 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=35.4
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEE
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
.|.+.|+..+..... .+.++++.+|...+.+ +.++++...+.+.+++.
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 478888888777665 4899999999976655 67888776666666543
No 275
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=81.13 E-value=15 Score=30.70 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=60.0
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
.+|.-|+...|..+|+.+.+.. .-+++|+-+...+.-.+.+.+... .. . ..+.++.... ..|.
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~--~~---~-~~~~~~~~~~---------~~g~ 66 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAA--LY---I-RRVLVVRDKE---------NGGK 66 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhc--cc---c-ceEEEEEecc---------cCCc
Confidence 3566666457778888887764 457777766555444444433211 00 0 0021221111 1478
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
+.++..+.+... .+.++++.+|.++..+ +.+++..+...
T Consensus 67 ~~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 67 AGALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred hHHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888888887775 4899999999977766 56664554443
No 276
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=80.66 E-value=24 Score=32.25 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=66.4
Q ss_pred cccccCCCc--cceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEeccc
Q 013483 23 YPLTKQRAK--PAVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAAT 96 (442)
Q Consensus 23 ~plt~~~pK--~Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~ 96 (442)
.+.....|+ -++|..|....|...|+.+.+... -+++|+.....+.-.+.+.+ + ... .+.++...
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-~--~~~------~v~~i~~~ 92 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-Y--ADK------GVKLLRFP 92 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH-H--hhC------cEEEEEcC
Confidence 333444565 677888875577777777766432 26777776555544444433 1 111 13333322
Q ss_pred ccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 97 QTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 97 ~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
.. .|-+.++..+..... .+.++++.+|.+...+ +.++++...
T Consensus 93 ~~---------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 93 ER---------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred CC---------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 21 478888888887765 4899999999987766 677777654
No 277
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=80.63 E-value=1.3 Score=44.25 Aligned_cols=43 Identities=35% Similarity=0.506 Sum_probs=34.6
Q ss_pred ccceEEEEEeCCCCCCCcccccCCCccceeecCc--cceehhhhhhhh
Q 013483 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGA--YRLIDVPMSNCI 51 (442)
Q Consensus 6 ~~~~~aVILAaG~gtRl~plt~~~pK~Llpi~g~--~pli~~~l~~l~ 51 (442)
..+..++++|||+|||+. ...||.++|++-. ..++++..+.+.
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il 139 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERIL 139 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHH
Confidence 457889999999999998 7789999999853 158887776643
No 278
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=79.14 E-value=21 Score=32.61 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=61.6
Q ss_pred ceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcccc
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (442)
++|.-|..-.|..+|+.+.+... -+|+||.....+.-.+.+.+. .....+ .+.++.... ..
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~~~~~~---~i~~~~~~~---------~~ 70 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---RLPSIF---RVVVVPPSQ---------PR 70 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---ccCCCe---eEEEecCCC---------CC
Confidence 34555543456666777665422 256666655444434444331 110000 122222111 14
Q ss_pred ChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEEE
Q 013483 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (442)
Q Consensus 109 G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~~ 163 (442)
|-+.++..+..... .+.++++.+|.....+ +.+++..+.+.+.++.++.
T Consensus 71 G~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 71 TKPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred chHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 77888888887655 4899999999988777 6788877765445544433
No 279
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=78.77 E-value=20 Score=34.12 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=62.5
Q ss_pred ceeecCcc-ceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccc
Q 013483 33 AVPIGGAY-RLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (442)
Q Consensus 33 Llpi~g~~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (442)
.+|.-|.. ..|..+|+.+.+.-. .+|+||-+...+.-.+.+.+..... .. ..+.++.....
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~---~~--~~v~vi~~~~n--------- 68 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK---YL--PKVKVLRLKKR--------- 68 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh---cC--CcEEEEEcCCC---------
Confidence 35666664 477778888765421 3787776655443333332211000 00 11445443332
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCC
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~ 157 (442)
.|-+.+.-.+..... .+.++++.+|+....+ +.++++...+...
T Consensus 69 ~G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 69 EGLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CCHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 578888887777665 4899999999977666 7888887765543
No 280
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=78.76 E-value=17 Score=32.32 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=61.3
Q ss_pred ceeecCccceehhhhhhhhhc------CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcc
Q 013483 33 AVPIGGAYRLIDVPMSNCINS------GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~------gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (442)
++|.-|....|...++.+.+. ..-+++||-+...+.-.+.+++... ..+. .+.++.....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~-----~~~~-~i~~i~~~~n-------- 67 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR-----KNPA-LIRVLTLPKN-------- 67 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH-----hCCC-cEEEEEcccC--------
Confidence 355666434556666666543 2347777755554433333332110 0010 0233332222
Q ss_pred ccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEE
Q 013483 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (442)
Q Consensus 107 ~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~ 162 (442)
.|.+.++..+..... .+.++++.+|.....+ +.++++.....+.++++.
T Consensus 68 -~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 -RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred -CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 588899998887776 4899999999977655 677777655555554443
No 281
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=76.72 E-value=23 Score=31.29 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred eEEEEEeC---CCCCCCccc-ccCCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcc
Q 013483 9 VAAVILGG---GAGTRLYPL-TKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (442)
Q Consensus 9 ~~aVILAa---G~gtRl~pl-t~~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 84 (442)
|++||+-. +.-||+.|. +.+.-+.++ . -||..++..+... +.+|.|++... ++..+..+
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----l-aML~dvi~Al~~~-~~~i~Vvtpde--~~~~~a~~--------- 63 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----L-AMLVDVLGALAGV-LGEITVVTPDE--EVLVPATK--------- 63 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----H-HHHHHHHHHhhhh-cCCceEEcCCh--Hhhhhccc---------
Confidence 56777753 566777764 111112221 1 4677778777776 78888888522 22222211
Q ss_pred cCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe-eee-cCHHHHHHH
Q 013483 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQN 151 (442)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~ 151 (442)
.+++.. . +.-.++.++++.+.. .+.++|+++|+ +.. ..++++++.
T Consensus 64 -----~~vl~d--~----------dLN~Ai~aa~~~~~~-----p~~v~vvmaDLPLl~~~~i~~~~~~ 110 (210)
T COG1920 64 -----LEVLAD--P----------DLNTAINAALDEIPL-----PSEVIVVMADLPLLSPEHIERALSA 110 (210)
T ss_pred -----ceeeec--c----------chHHHHHHHHhhCCC-----CcceEEEecccccCCHHHHHHHHHh
Confidence 122211 1 244578888877763 26799999999 444 457777764
No 282
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=73.87 E-value=25 Score=35.71 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=62.8
Q ss_pred cceeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 32 PAVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 32 ~Llpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
-++|..|....+..+++.+.+..- -+|+|+.+...+.-.+.+.+.. .. .+ .+.++...+. .|
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~--~~---~~--~v~vv~~~~n---------~G 142 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALL--AE---DP--RLRVIHLAHN---------QG 142 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHH--Hh---CC--CEEEEEeCCC---------CC
Confidence 678888875677788888776432 3777776554443333332211 00 00 1444432222 47
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
-+.++..+..... .+.++++.+|.+.+.+ +.++++.+.+.
T Consensus 143 ka~AlN~gl~~a~------~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 143 KAIALRMGAAAAR------SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred HHHHHHHHHHhCC------CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 8888888876654 4899999999988877 66777665443
No 283
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.09 E-value=34 Score=30.42 Aligned_cols=105 Identities=9% Similarity=0.057 Sum_probs=59.9
Q ss_pred ceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHH-hhccCCCCcccCCceEEEecccccCCcCCCccc
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLA-RAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~-~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (442)
++|..|....|..+|+.+..... -+|+||-+...+.-.+.+. ... ... ..+.++...... .
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~--~~~-----~~v~~~~~~~~~-------~ 67 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAA--KPN-----FQLKILNNSRVS-------I 67 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHh--CCC-----cceEEeeccCcc-------c
Confidence 46677764577788888765422 3676666544443333332 111 011 113333322211 1
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCC
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~ 157 (442)
.|-..++..+..... .+.++++.+|.+...+ +.++++.+...+.
T Consensus 68 ~g~~~a~n~g~~~~~------~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 68 SGKKNALTTAIKAAK------GDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred chhHHHHHHHHHHhc------CCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 467777777766554 4899999999988776 6777776655443
No 284
>PRK11204 N-glycosyltransferase; Provisional
Probab=72.67 E-value=28 Score=34.97 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=62.7
Q ss_pred cceeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 32 PAVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 32 ~Llpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
-++|.-|....+..+++.+.+..- -+++|+-....+.-.+.+++.. . +.+ .+.++...+. .|
T Consensus 58 ViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~--~---~~~--~v~~i~~~~n---------~G 121 (420)
T PRK11204 58 ILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA--A---QIP--RLRVIHLAEN---------QG 121 (420)
T ss_pred EEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH--H---hCC--cEEEEEcCCC---------CC
Confidence 366777765678888888776542 3777776554443333333211 0 000 1334332222 47
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
-+.++..+.+..+ .+.++++.+|.+.+.+ +.++++.+++.
T Consensus 122 ka~aln~g~~~a~------~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 122 KANALNTGAAAAR------SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred HHHHHHHHHHHcC------CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 8888888887665 4899999999988777 67777776543
No 285
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.29 E-value=34 Score=29.52 Aligned_cols=97 Identities=8% Similarity=0.035 Sum_probs=58.1
Q ss_pred eeecCccceehhhhhhhhhcCCc--EEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 34 VPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
+|.-|....|..+|+.+.+.... +|+||-+...+...+.+.+.. .. .+.+.. .+ ..|.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~---~~------~~~~~~-~~---------~~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE---DK------ITYWIS-EP---------DKGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH---hh------cEEEEe-cC---------CcCHH
Confidence 45556545778888888765443 676665444444444444321 10 022221 11 14788
Q ss_pred HHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
.++..+.+... .+.++++.+|..+..+ +.+++......
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 88888887765 4899999999977655 67777444443
No 286
>PRK10073 putative glycosyl transferase; Provisional
Probab=71.03 E-value=42 Score=32.56 Aligned_cols=106 Identities=13% Similarity=0.037 Sum_probs=60.7
Q ss_pred ceeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
.+|+-|....|..+|+.+.+... -+|+||-....+.-.+.+.+.. ... ..+.++. +.. .|.
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~--~~~-----~~i~vi~--~~n--------~G~ 73 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA--ENY-----PHVRLLH--QAN--------AGV 73 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH--hhC-----CCEEEEE--CCC--------CCh
Confidence 34555543566777777766532 3666665544332222222211 000 0144442 211 478
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEE
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
+.|...+..... .+.++++.+|..+..+ +..+++...+.+.++.+
T Consensus 74 ~~arN~gl~~a~------g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 74 SVARNTGLAVAT------GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 888888877666 4899999999977666 67777766666666543
No 287
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=70.68 E-value=34 Score=29.35 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=33.0
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
.|.+.++..+..... .+.++++.+|.....+ +.++++. ...+.++.
T Consensus 66 ~G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v 112 (181)
T cd04187 66 FGQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVV 112 (181)
T ss_pred CCcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEE
Confidence 488888888877665 4899999999977655 6777776 34444433
No 288
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=68.90 E-value=42 Score=29.25 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=53.9
Q ss_pred eeecCcc-ceehhhhhhhhhcCC--cEEEEEeccChh-hHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 34 VPIGGAY-RLIDVPMSNCINSGI--NKVYILTQYNSA-SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 34 lpi~g~~-pli~~~l~~l~~~gi--~~i~iv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
+|.-|.. ..+..+|+.+.+.-. -+|+||-+...+ ...+.+.... ... ..+.++..... .|
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~--~~~-----~~~~~~~~~~~---------~g 70 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYA--AQD-----PRIKVVFREEN---------GG 70 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHH--hcC-----CCEEEEEcccC---------CC
Confidence 4445553 455566666655432 367666554433 3333333211 000 01333322221 47
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHH
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~ 152 (442)
.+.++..+..... .+.++++..|.....+ +..+++.+
T Consensus 71 ~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 71 ISAATNSALELAT------GEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHH
Confidence 7888887777655 4789999999977766 67788776
No 289
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=68.69 E-value=40 Score=34.23 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=61.8
Q ss_pred cceeecCccceehhhhhhhhhcCC--c--EEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccc
Q 013483 32 PAVPIGGAYRLIDVPMSNCINSGI--N--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (442)
Q Consensus 32 ~Llpi~g~~pli~~~l~~l~~~gi--~--~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (442)
-++|.-|....+..+++.+.+... + +|+|+-+...+.-.+.+.+... .++ .+.+......
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~-----~~~--~v~v~~~~~~--------- 116 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN-----EFP--GLSLRYMNSD--------- 116 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH-----hCC--CeEEEEeCCC---------
Confidence 466777875678888888876543 2 5666655444433333322110 001 1222221221
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
.|-+.|+..+.+... .+.++++.+|.+.+.+ +.++++.+.+.
T Consensus 117 ~Gka~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 117 QGKAKALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CCHHHHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 478899988887665 4789999999988776 67888776544
No 290
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=67.17 E-value=70 Score=27.82 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=58.6
Q ss_pred ceeecCcc--ceehhhhhhhhhcC--CcEEEEEeccC-hhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccc
Q 013483 33 AVPIGGAY--RLIDVPMSNCINSG--INKVYILTQYN-SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (442)
Q Consensus 33 Llpi~g~~--pli~~~l~~l~~~g--i~~i~iv~~~~-~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (442)
++|+.|+. ..|..+|+.+.+.. ..+++||.... .+...+.+.+.. .. ++ +.++...+.
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~---~~--~~---i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFK---RK--LP---LKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHH---hc--CC---eEEEEcCcc---------
Confidence 46777652 27888888887753 25666665543 333433333211 00 11 333322222
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHH
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~ 154 (442)
.|.+.+...+....+ .+.++++.+|.+...+ +..+++...+
T Consensus 66 ~G~~~a~N~g~~~a~------gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 66 RGLGKALNEGLKHCT------YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 488888888776655 4899999999977666 6777776544
No 291
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=66.48 E-value=86 Score=31.12 Aligned_cols=119 Identities=21% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCc--cceeecCccceehhhhhhhhhcCC---cEEEEEeccChhh---HHHHHHhhccCCCCcccCCceEEEecccccC
Q 013483 28 QRAK--PAVPIGGAYRLIDVPMSNCINSGI---NKVYILTQYNSAS---LNRHLARAYNYGSGVTFGDGCVEVLAATQTP 99 (442)
Q Consensus 28 ~~pK--~Llpi~g~~pli~~~l~~l~~~gi---~~i~iv~~~~~~~---i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~ 99 (442)
..|+ ..+|.-|....|...|+.+.+... -+|+||-+...+. +.+.+...+ ... ..+.++.....+
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~--~~~-----~~i~vi~~~~~~ 110 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY--GRG-----DRLTVVSGQPLP 110 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc--CCC-----CcEEEecCCCCC
Confidence 3454 366777765788888988877532 3777776655442 333332211 000 014444322211
Q ss_pred CcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcE
Q 013483 100 GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (442)
Q Consensus 100 ~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~ 159 (442)
.| ..|-..++..+.+...+. ....+.++++.+|+....+ +.++++..++.+.++
T Consensus 111 --~g---~~Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 111 --PG---WSGKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred --CC---CcchHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 11 136666777666555411 0113789999999987766 688888776665543
No 292
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=66.27 E-value=81 Score=26.70 Aligned_cols=70 Identities=7% Similarity=-0.009 Sum_probs=42.3
Q ss_pred eEEeeeEEcCC-cEECCCCEEeceEEECCccccchhhhhhhhcCCCcceEeCCCcEeeeeEeCCCcEECCCeEEccCCCc
Q 013483 333 SFIEHSVVGIR-SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI 411 (442)
Q Consensus 333 ~~i~~~~ig~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~ig~~~~~~~~~~~ 411 (442)
.++...+..+. +.|++..++...+..+. ..| ++++.+|....+.+.|.....+.. +.-
T Consensus 46 G~~~G~v~s~~~iiv~~~g~V~gei~a~~-------------------~iv-~G~v~Gni~~a~~Vei~~~g~v~G-dI~ 104 (146)
T COG1664 46 GTFEGDVHSDGGIVVGESGRVEGEIEAEH-------------------LIV-EGKVEGNILAAERVELYPGGRVIG-DIT 104 (146)
T ss_pred EEEEEEEEeCCCEEECCccEEEEEEEeCE-------------------EEE-eeEEEEEEEEeeEEEEcCCcEEee-eec
Confidence 35544455555 88888888888888775 333 677777776777777776665542 222
Q ss_pred ccceeeCCCeEE
Q 013483 412 QEADRSAEGFYI 423 (442)
Q Consensus 412 ~~~~~~~~~~~i 423 (442)
.+...+.+|+++
T Consensus 105 ~~~i~v~~Ga~f 116 (146)
T COG1664 105 TKEITVEEGAIF 116 (146)
T ss_pred ccEEEEccCCEE
Confidence 223345555554
No 293
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=64.57 E-value=86 Score=27.39 Aligned_cols=103 Identities=9% Similarity=0.025 Sum_probs=51.4
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|+-|..+.|...|+.+.+.- --+++||.....+.-.+.+.+... +++...+.++...... | ..+.
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~-----~~~~~~~~~~~~~~~~---g---~~~~ 74 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIA-----KYPNVDARLLIGGEKV---G---INPK 74 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHH-----HCCCCcEEEEecCCcC---C---CCHh
Confidence 3555555456667777776532 247777766554432333322110 0111113333222211 0 0123
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHH
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~ 152 (442)
+.++..+..... .+.++++.+|...+.+ +.++++..
T Consensus 75 ~~~~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 75 VNNLIKGYEEAR------YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCceEChhHHHHHHHHh
Confidence 345545554444 4899999999977666 66776653
No 294
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=64.18 E-value=12 Score=41.73 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=19.6
Q ss_pred eEeCCC-cEeeeeEeCCCcEECCCeEEccC
Q 013483 380 VGIGEN-TKIKECIIDKNARIGKNVIIANS 408 (442)
Q Consensus 380 ~~i~~~-~~i~~~~ig~~~~ig~~~~~~~~ 408 (442)
+.++++ ++|++|.|+.+.+||.++++.+.
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 666665 44667777777777777777543
No 295
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=63.87 E-value=55 Score=27.88 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=55.5
Q ss_pred ceeecCccceehhhhhhhhhc--CCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|+...+..+|+.+.+. ...+++|+-....+...+.+.+.. . ..+...+.+....+. .|.
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~---~--~~~~~~~~~~~~~~~---------~~~ 67 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK---S--QFPIPIKHVWQEDEG---------FRK 67 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH---h--hcCCceEEEEcCCcc---------hhH
Confidence 356666545778888888764 234777776655544444443321 0 011111222211111 245
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHH
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~ 152 (442)
+.+...+.+... .+.++++.+|.+...+ +.++++.+
T Consensus 68 ~~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 68 AKIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 666666665554 4899999999977766 56666654
No 296
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=63.87 E-value=64 Score=28.53 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=55.1
Q ss_pred ceeecCccceehhhhhhhhhcC--CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|..+.|...|+.+.+.- ..+++||-+...+...+.+.+ . . +.++. .. .|-
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~----~-------~~~~~--~~---------~g~ 60 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A----G-------VVVIS--SP---------KGR 60 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C----C-------eEEEe--CC---------cCH
Confidence 4566666456777787776643 356777755444444444432 1 0 22221 11 366
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcC
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~ 156 (442)
+.+...+..... .+.++++..|..+..+ +.+++.......
T Consensus 61 ~~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 61 ARQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 677766666554 4899999999977766 566555444333
No 297
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=61.21 E-value=1.1e+02 Score=26.37 Aligned_cols=102 Identities=9% Similarity=0.095 Sum_probs=58.2
Q ss_pred ceeecCccceehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcccc
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (442)
++|.-|....|..+|+.+.+... -+|+||.....+.-.+.+.. + ... +....... ..
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-~--~~~-------~~~~~~~~---------~~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-A--GAT-------VLERHDPE---------RR 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-c--CCe-------EEEeCCCC---------CC
Confidence 46777754677778888766432 36777766554443433332 1 110 11111111 13
Q ss_pred ChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHH
Q 013483 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (442)
Q Consensus 109 G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~ 154 (442)
|.+.++..+...... .....+.++++.+|.....+ +..+++.+..
T Consensus 63 gk~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 63 GKGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CHHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 788888877766530 00114789999999988777 5677766543
No 298
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=60.32 E-value=63 Score=31.94 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=57.7
Q ss_pred cceeecCccceehhhhhhhhhcCC--cEEEEEeccChh---hHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcc
Q 013483 32 PAVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSA---SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (442)
Q Consensus 32 ~Llpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (442)
-++|..|..+.|...|+.+.+..- -+|+++.....+ ++.+.+.+.+ +...++++...+..+
T Consensus 45 ViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~--------p~~~i~~v~~~~~~G------ 110 (373)
T TIGR03472 45 VLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF--------PDADIDLVIDARRHG------ 110 (373)
T ss_pred EEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC--------CCCceEEEECCCCCC------
Confidence 378888876888888988877543 477676654443 2222332221 111143332222211
Q ss_pred ccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 107 ~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
..+-..++..+.+..+ .+.++++.+|.....+ +++++....
T Consensus 111 ~~~K~~~l~~~~~~a~------ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 111 PNRKVSNLINMLPHAR------HDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred CChHHHHHHHHHHhcc------CCEEEEECCCCCcChhHHHHHHHHhc
Confidence 1234445554443333 5899999999988777 677776654
No 299
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=59.61 E-value=98 Score=27.00 Aligned_cols=100 Identities=6% Similarity=0.036 Sum_probs=56.0
Q ss_pred ceeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccCh
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~ 110 (442)
++|.-|+...|..+|+.+.+... -+++||-....+.-.+.+.+.. .. .+ ..+.+....+. .|.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~---~~--~~-~~~~~~~~~~~---------~G~ 67 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYI---DK--DP-FIIILIRNGKN---------LGV 67 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHH---hc--CC-ceEEEEeCCCC---------ccH
Confidence 45666764567778888766432 3666665544333233332211 00 10 01223322222 477
Q ss_pred HHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
+.++..+....+ .+.++++..|..+..+ +.++++...
T Consensus 68 ~~~~n~g~~~~~------g~~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 68 ARNFESLLQAAD------GDYVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCcccChhHHHHHHHHHh
Confidence 888777765554 4899999999977766 677777633
No 300
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=58.93 E-value=11 Score=33.95 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=50.4
Q ss_pred ceeecCccceehhhhhhhhhc--CCcEEEEEeccChhhH---HHHHHhhccCCCCcccCCceEEEecccccCCcCCCccc
Q 013483 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASL---NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~--gi~~i~iv~~~~~~~i---~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (442)
++|..|..+.+..+|+.+.+. .--+++|+.+...++. .+.+...+ +...+.++......+ +
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~--------~~~~v~vi~~~~~~g------~ 71 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY--------PRVRVRVIRRPRNPG------P 71 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT--------GG-GEEEEE----HH------H
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc--------CCCceEEeecCCCCC------c
Confidence 456666546777777777653 2246667665444332 22222222 111144443222110 1
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHH
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~ 152 (442)
.+...++..+..... .+.++++..|.+.+.+ +.++++.+
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHH
Confidence 245677888777766 4899999999988766 67888777
No 301
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=57.98 E-value=1.4e+02 Score=26.68 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=51.8
Q ss_pred eeecCcc-ceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHH
Q 013483 34 VPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (442)
Q Consensus 34 lpi~g~~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~ 112 (442)
+|.-|.. ..+..+|+.+.+. ..+++||=+...+.-...... . . ..+.++..... .|-+.
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~--~-------~~i~~i~~~~n---------~G~~~ 62 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-N--S-------EKIELIHLGEN---------LGIAK 62 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-c--C-------CcEEEEECCCc---------eehHH
Confidence 4455554 5667777777766 456666654333322222211 0 0 11344432222 47777
Q ss_pred HHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHH
Q 013483 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFV 149 (442)
Q Consensus 113 al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l 149 (442)
+...+.+.... ...+.++++.+|...+.+ +.+++
T Consensus 63 a~N~g~~~a~~---~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 63 ALNIGIKAALE---NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhhHHHHHHHh---CCCCEEEEECCCCCcCHhHHHHHH
Confidence 77777665531 014899999999988766 56664
No 302
>PRK10018 putative glycosyl transferase; Provisional
Probab=55.88 E-value=1.5e+02 Score=27.94 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=56.6
Q ss_pred eeecCccceehhhhhhhhhcCC--cEEEEEeccCh--hhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 34 VPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNS--ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
+|.-|....|..+|+.+.+.-. -+++||-.... +.+.++... + .+ ..+.++..... .|
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~-~--~~------~ri~~i~~~~n---------~G 72 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTA-L--ND------PRITYIHNDIN---------SG 72 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHH-c--CC------CCEEEEECCCC---------CC
Confidence 4555554566777877766433 36666654333 233344332 1 11 11444433322 48
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHH
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~ 154 (442)
.+.+.-.+..... .+.++++.+|.....+ +..+++...+
T Consensus 73 ~~~a~N~gi~~a~------g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 73 ACAVRNQAIMLAQ------GEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHHcC------CCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 8888877776665 4899999999977766 6777765543
No 303
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=55.71 E-value=1.2e+02 Score=29.37 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=34.2
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEE
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~t 160 (442)
.|.+.|+..+.+... .+.++++.+|.-.+.+ +.++++..+ .+.+++
T Consensus 76 ~G~~~A~~~G~~~A~------gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT------GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC------CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 488899998887665 4889999999966554 778888764 445644
No 304
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.86 E-value=1.2e+02 Score=26.49 Aligned_cols=100 Identities=8% Similarity=0.016 Sum_probs=56.2
Q ss_pred eeecCccceehhhhhhhhhcCC--cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 34 VPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
+|.-|+...|..+|+.+.+... .+++|+-+...+...+.+.+.. .. .+ +.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~---~~--~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG---DL--DN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc---CC--Cc---eEEEECccc---------cchh
Confidence 4555543567778888876432 4677776555555555554421 11 11 233322221 4666
Q ss_pred HHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
.++..+...... ...+.++++..|..+..+ +.++++...
T Consensus 66 ~~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 666555554321 124789999999988777 566666554
No 305
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=53.13 E-value=1.1e+02 Score=27.54 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=54.2
Q ss_pred ceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHH
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~ 112 (442)
++|.-|....|..+|+.+... .++|+||-+...+.-.+.+.. + + +.++.. . ..|-+.
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~-~--~---------~~v~~~-~---------~~g~~~ 61 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE-Y--G---------AKVYQR-W---------WDGFGA 61 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH-c--C---------CEEEEC-C---------CCChHH
Confidence 455556545666777776543 368877766554443333321 1 1 223322 1 147777
Q ss_pred HHHHhhhhhcCCCCCccCeEEEEcCCeeeecCH-HHHHHHHH
Q 013483 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHR 153 (442)
Q Consensus 113 al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~~l~~~~ 153 (442)
+...+..... .+.++++.+|.+...++ .++.+...
T Consensus 62 ~~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 62 QRNFALELAT------NDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 7777776665 47999999999877774 45554433
No 306
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=51.73 E-value=1.7e+02 Score=25.90 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=57.7
Q ss_pred ceeecCcc-ceehhhhhhhhhcCC-c---EEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccc
Q 013483 33 AVPIGGAY-RLIDVPMSNCINSGI-N---KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (442)
Q Consensus 33 Llpi~g~~-pli~~~l~~l~~~gi-~---~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (442)
.+|.-|.. .++...|+.+.+... . +++||-+...+...+.+.+.. ... .+.++......
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~~~-----~~~~~~~~~~~-------- 69 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG---VEY-----GYRYLTRPDNR-------- 69 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh---ccc-----CceEEEeCCCC--------
Confidence 35566642 267778888877543 2 677777666656555554421 111 12222211111
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHH
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~ 154 (442)
.+.+.++..+.+... .+.++++..|.+.+.+ +.++++...+
T Consensus 70 ~~~~~~~n~~~~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 70 HAKAGNLNNALAHTT------GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCcHHHHHHHHHhCC------CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 234556666666554 4899999999988777 5677766544
No 307
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=51.00 E-value=1.8e+02 Score=25.85 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=61.6
Q ss_pred ceehhhhhhh-hhcCCc-EEEEEeccCh---hhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHHHHH
Q 013483 41 RLIDVPMSNC-INSGIN-KVYILTQYNS---ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVR 115 (442)
Q Consensus 41 pli~~~l~~l-~~~gi~-~i~iv~~~~~---~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~ 115 (442)
|++-|.+... .+.+.+ +++||=.... .+..+.+++.+ +. ..+.+.+-.. -+|.+.|..
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--g~------d~i~l~pR~~---------klGLgtAy~ 81 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--GE------DNILLKPRTK---------KLGLGTAYI 81 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--CC------CcEEEEeccC---------cccchHHHH
Confidence 5666666654 445665 5555543332 35555555443 21 1243333222 268888998
Q ss_pred HhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCCcEEEEEee
Q 013483 116 QFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLP 165 (442)
Q Consensus 116 ~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl~~~~ 165 (442)
+++.+.. .+.++++.+|+--..- +.++++...+.+.++++.+.-
T Consensus 82 hgl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 82 HGLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred hhhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 8887776 3667777899855444 678888777777787766643
No 308
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=50.94 E-value=1.2e+02 Score=26.81 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=56.0
Q ss_pred ceeecCccceehhhhhhhhhcCC---cEEEEEeccChh---hHHHHHHhhccCCCCcccCCceEEEeccc-ccCCcCCCc
Q 013483 33 AVPIGGAYRLIDVPMSNCINSGI---NKVYILTQYNSA---SLNRHLARAYNYGSGVTFGDGCVEVLAAT-QTPGEAGKR 105 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~gi---~~i~iv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~v~i~~~~-~~~~~~~~~ 105 (442)
++|.-|....|..+|+.+.+... -+++||-....+ ++.+.+.... .. ..+.++... ...
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~--~~------~~~~~~~~~~~~~------ 67 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL--ED------SGVIVLVGSHNSP------ 67 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC--cc------cCeEEEEecccCC------
Confidence 35566654677788888866432 267776554433 2222222111 00 012222111 110
Q ss_pred cccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcC
Q 013483 106 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (442)
Q Consensus 106 ~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~ 156 (442)
...|.+.+...+..... .+.++++.+|.+...+ +.+++....+.+
T Consensus 68 ~~~G~~~a~N~g~~~a~------gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 68 SPKGVGYAKNQAIAQSS------GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred CCccHHHHHHHHHHhcC------CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 01477777776665554 4899999999977665 667776655444
No 309
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=50.70 E-value=91 Score=24.18 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=8.4
Q ss_pred CcEECCCCEEeceEEEC
Q 013483 343 RSRINANVHLKDTMMLG 359 (442)
Q Consensus 343 ~~~i~~~~~i~~~~~~~ 359 (442)
...|+.++.+..++...
T Consensus 36 ~v~i~~~~~v~G~i~~~ 52 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKAD 52 (101)
T ss_pred EEEEcCCCEEEEEEEEe
Confidence 44555555555544443
No 310
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=49.15 E-value=1.2e+02 Score=28.34 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=52.5
Q ss_pred eehhhhhhhhhcCCcEEEEEeccChh--hHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHHHHHHhhh
Q 013483 42 LIDVPMSNCINSGINKVYILTQYNSA--SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHW 119 (442)
Q Consensus 42 li~~~l~~l~~~gi~~i~iv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~ 119 (442)
.|...++.+.+. ..+|+||=+...+ .+.+.+.+ . ..+.++..... .|-+.|...+.+
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-~----------~~i~~i~~~~N---------~G~a~a~N~Gi~ 67 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-G----------QKIALIHLGDN---------QGIAGAQNQGLD 67 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-C----------CCeEEEECCCC---------cchHHHHHHHHH
Confidence 455666666654 3566666554222 33332211 0 11445443322 588888888776
Q ss_pred hhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcC
Q 013483 120 LFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (442)
Q Consensus 120 ~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~ 156 (442)
.... ...+.++++..|.....+ +.++++...+.+
T Consensus 68 ~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 68 ASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred HHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 6531 125899999999987766 667777665443
No 311
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=48.55 E-value=1.2e+02 Score=33.62 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=59.5
Q ss_pred cceeecCccc--eehhhhhhhhhcCC----cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCc
Q 013483 32 PAVPIGGAYR--LIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKR 105 (442)
Q Consensus 32 ~Llpi~g~~p--li~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 105 (442)
-++|.-|. + ++..++..+.+..- -+|+|+-+...++..+..++ . + +.++.....
T Consensus 264 ViIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-~----~-------v~yI~R~~n------- 323 (852)
T PRK11498 264 IFVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-V----G-------VKYIARPTH------- 323 (852)
T ss_pred EEEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-C----C-------cEEEEeCCC-------
Confidence 46777787 4 56667766655321 26777766555666555543 1 1 222211111
Q ss_pred cccChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcC
Q 013483 106 WFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (442)
Q Consensus 106 ~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~ 156 (442)
..|-++++..+.+..+ .+.++++.+|++...+ +.+++..+.+..
T Consensus 324 -~~gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~dP 368 (852)
T PRK11498 324 -EHAKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKDK 368 (852)
T ss_pred -CcchHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhCC
Confidence 1256788888887765 4899999999988777 566776655443
No 312
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=48.32 E-value=1.1e+02 Score=29.68 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=33.3
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHH---cCCcEEEE
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ---SGADITIS 162 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~---~~~~~tl~ 162 (442)
.|.+.|+..+..... .+.++++.+|...+.+ +..+++.... .+.++++.
T Consensus 148 ~G~~~A~~~Gi~~a~------gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 148 KGKGGAVRIGMLASR------GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred CChHHHHHHHHHHcc------CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 588999988877654 4889999999966654 5666665443 34444443
No 313
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=45.64 E-value=1.5e+02 Score=26.61 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=56.2
Q ss_pred ceeecCccc-eehhhhhhhhhcCC--cEEEEEeccChh-hHH----HHHHhhccCCCCcccCCceEEEecccccCCcCCC
Q 013483 33 AVPIGGAYR-LIDVPMSNCINSGI--NKVYILTQYNSA-SLN----RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGK 104 (442)
Q Consensus 33 Llpi~g~~p-li~~~l~~l~~~gi--~~i~iv~~~~~~-~i~----~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 104 (442)
++|.-|..+ +|...++.+.+... -+++||-+...+ ... ++..+ + ... +.++...+.
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~--~~~-------i~~i~~~~~------ 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-L--GER-------FRFFHVEPL------ 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-h--CCc-------EEEEEcCCC------
Confidence 467777633 78888888877643 367666654433 222 22222 1 111 223322221
Q ss_pred ccccC-hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHH
Q 013483 105 RWFQG-TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (442)
Q Consensus 105 ~~~~G-~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~ 153 (442)
.| .++++..+...... ..+.++++.+|.....+ +.+++....
T Consensus 67 ---~G~~~~a~n~g~~~a~~----~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 ---PGAKAGALNYALERTAP----DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred ---CCCchHHHHHHHHhcCC----CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 24 36777777666532 13789999999977766 677777653
No 314
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.56 E-value=1.3e+02 Score=30.12 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred cceeecCccc-eehhhhhhhhhcCCc--EEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCcccc
Q 013483 32 PAVPIGGAYR-LIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (442)
Q Consensus 32 ~Llpi~g~~p-li~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (442)
-++|.-|..+ .+..+++.+.+.... ++++|.....++..+.+.+... +++ ..+.+...... ..
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~-----~~~-~~~~~~~~~~~--------~~ 123 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGA-----EYG-PNFRVIYPEKK--------NG 123 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHh-----hcC-cceEEEecccc--------Cc
Confidence 5677788767 899999999887643 7888877666666666655431 110 11233211011 24
Q ss_pred ChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHcCC
Q 013483 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (442)
Q Consensus 109 G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~~~ 157 (442)
|-+.++..+..... .+-++++.+|+....+ +.+++..+.....
T Consensus 124 gK~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 124 GKAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred cchHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 77888888877665 4889999999988877 6788877665443
No 315
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=39.47 E-value=1.2e+02 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=13.4
Q ss_pred eEeCCCcEeeeeEeCCCcEECCCeEE
Q 013483 380 VGIGENTKIKECIIDKNARIGKNVII 405 (442)
Q Consensus 380 ~~i~~~~~i~~~~ig~~~~ig~~~~~ 405 (442)
+.|...+.|...+-.+...|..++.+
T Consensus 70 v~i~~~~~v~G~i~~~~l~v~~ga~i 95 (101)
T PF04519_consen 70 VEIYGTARVEGDITAGKLEVEGGASI 95 (101)
T ss_pred EEEeCCEEEEEEEEECEEEEeCCCEE
Confidence 45555555554444444555555544
No 316
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=38.11 E-value=1.9e+02 Score=25.07 Aligned_cols=106 Identities=9% Similarity=0.003 Sum_probs=56.8
Q ss_pred ceeecCccceehhhhhhhhhcC-CcEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChH
Q 013483 33 AVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (442)
Q Consensus 33 Llpi~g~~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~ 111 (442)
++|.-|....|..+|+.+.+.. .-+|+||-....+.-.+.+. .. .. . ..+.++...... ...|-+
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~-~~-~-----~~v~~i~~~~~~------~~~Gk~ 67 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LA-IT-D-----SRVHLLRRHLPN------ARTGKG 67 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-he-ec-C-----CcEEEEeccCCc------CCCCHH
Confidence 3566665467788888887654 23666666555544444443 11 00 0 013333211000 014788
Q ss_pred HHHHHhhhhhcCCC---C--CccCeEEEEcCCeeeecC-HHHHHHHH
Q 013483 112 DAVRQFHWLFEDPR---N--KVIEDVLILSGDHLYRMD-YMDFVQNH 152 (442)
Q Consensus 112 ~al~~~~~~l~~~~---~--~~~~~~lv~~gD~i~~~~-l~~~l~~~ 152 (442)
.++..++....... . ...+.++++.+|.....+ +..+.+..
T Consensus 68 ~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 68 DALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 88888877653200 0 012578999999987777 55654443
No 317
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=36.70 E-value=2.3e+02 Score=27.15 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=33.9
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCee-eecC-HHHHHHHHHH-cCCcEEEE
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQ-SGADITIS 162 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~-l~~~l~~~~~-~~~~~tl~ 162 (442)
.|-+.++..+..... .+.++++.+|.. .+.+ +.++++.... .+.+++..
T Consensus 101 ~Gkg~A~~~g~~~a~------gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAATT------GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHhcC------CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 488888888776554 488999999996 5555 6778876653 34454443
No 318
>PRK10063 putative glycosyl transferase; Provisional
Probab=36.58 E-value=3.4e+02 Score=24.93 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=52.9
Q ss_pred eecCccceehhhhhhhhh----cCC-cEEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccC
Q 013483 35 PIGGAYRLIDVPMSNCIN----SGI-NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (442)
Q Consensus 35 pi~g~~pli~~~l~~l~~----~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (442)
|.-|....|..+|+.+.+ ... -+++||=+...+.-.+.+++. ... . .+.++. +.. .|
T Consensus 8 ~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~---~~~--~---~i~~i~--~~~--------~G 69 (248)
T PRK10063 8 VAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENL---NGI--F---NLRFVS--EPD--------NG 69 (248)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHh---ccc--C---CEEEEE--CCC--------CC
Confidence 344432456667777653 122 366666554444444444331 111 0 133332 111 48
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecCHHHHHHHHHHc
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~~~~~ 155 (442)
.+.|+..+..... .+.++++.+|.+...+..+++......
T Consensus 70 ~~~A~N~Gi~~a~------g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 70 IYDAMNKGIAMAQ------GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred HHHHHHHHHHHcC------CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 8899988887765 489999998887766654445444333
No 319
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=36.57 E-value=1.4e+02 Score=26.69 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=25.7
Q ss_pred hHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHH
Q 013483 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQ 150 (442)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~ 150 (442)
.+.++..+.+..+ .+.++++.+|.+...+ +.++..
T Consensus 75 k~~a~n~g~~~a~------~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 75 KAGALAEGMKVAK------GEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred chHHHHHHHHhCC------CCEEEEEcCCCCCChHHHHHhhh
Confidence 4667777776665 4899999999988777 556443
No 320
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=32.50 E-value=2.6e+02 Score=25.76 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=22.4
Q ss_pred hhhhhhhhcCCcEEEEEeccChh---hHHHHHH
Q 013483 45 VPMSNCINSGINKVYILTQYNSA---SLNRHLA 74 (442)
Q Consensus 45 ~~l~~l~~~gi~~i~iv~~~~~~---~i~~~~~ 74 (442)
=+++.|+..|+++|.+++.|..+ .+.+++.
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~ 142 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPETSRPMAQYFA 142 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHH
Confidence 35678888999999999998763 4455554
No 321
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=30.96 E-value=3.2e+02 Score=29.84 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=30.9
Q ss_pred ChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHHHHHHc
Q 013483 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (442)
Q Consensus 109 G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~~~~~ 155 (442)
+-++++..+.+..+ .+.++++.+|++...+ +.+++..+.+.
T Consensus 215 ~KAgnLN~al~~a~------gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 215 AKAGNINNALKHTD------GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CChHHHHHHHHhcC------CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 45778888777665 4899999999988777 57777766443
No 322
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=30.96 E-value=70 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=17.5
Q ss_pred ceehhhhhhhhhcCCcEEEEEe
Q 013483 41 RLIDVPMSNCINSGINKVYILT 62 (442)
Q Consensus 41 pli~~~l~~l~~~gi~~i~iv~ 62 (442)
|-+..+++.|.+.|+++|+++-
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEe
Confidence 7888888888888888877763
No 323
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=29.26 E-value=2.4e+02 Score=23.88 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=14.6
Q ss_pred eEeCCCcEeeeeEeCCCcEECCCeEEc
Q 013483 380 VGIGENTKIKECIIDKNARIGKNVIIA 406 (442)
Q Consensus 380 ~~i~~~~~i~~~~ig~~~~ig~~~~~~ 406 (442)
+.|...+.+..-+-++.-.|..|+.+.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEE
Confidence 566666655544445555555555544
No 324
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=26.37 E-value=79 Score=31.00 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCCcccccCCCccceeecCccceehhhhhhhhh-cCCcEEEEEeccCh--hhHHHHHH
Q 013483 20 TRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNS--ASLNRHLA 74 (442)
Q Consensus 20 tRl~plt~~~pK~Llpi~g~~pli~~~l~~l~~-~gi~~i~iv~~~~~--~~i~~~~~ 74 (442)
..|.||....+.-++.|-+++..|.++|+.|++ .||++..++..+.. +++.+.+.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 457788778888999999996699999999988 58999999988654 57776664
No 325
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=26.20 E-value=36 Score=30.96 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=46.9
Q ss_pred eEEEEEeCCCC---CCCccc-cc-CCCccceeecCccceehhhhhhhhhcCCcEEEEEeccChhhHHHHHHhhccCCCCc
Q 013483 9 VAAVILGGGAG---TRLYPL-TK-QRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (442)
Q Consensus 9 ~~aVILAaG~g---tRl~pl-t~-~~pK~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 83 (442)
|++||+.-..+ |||.|. +. .+.. +. . -|+..++..+.. ++ +++|+.. ..+.+....
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~----La-~-aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~-------- 61 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREA----LA-L-AMLRDVLAALRA--VD-VVVVSRD--PEVAALARA-------- 61 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHH----HH-H-HHHHHHHHHHHH---S-EEEEES----S-TTTTT---------
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHH----HH-H-HHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhh--------
Confidence 67888875433 666543 11 0111 11 2 578888988877 55 6666642 122111110
Q ss_pred ccCCceEEEecccccCCcCCCccccChHHHHHHhhhhhcCCCCCccCeEEEEcCCe--eeecCHHHHHHHH
Q 013483 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 152 (442)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~~ 152 (442)
.++ ++++... . .|.-.||..+..... .+.++++++|+ +...++..++...
T Consensus 62 ~~g---~~vl~d~-~---------~gLN~Al~~a~~~~~------~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 62 RLG---AEVLPDP-G---------RGLNAALNAALAAAG------DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp --S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred ccC---CeEecCC-C---------CCHHHHHHHHHhccC------CCceEEeecCCccCCHHHHHHHHhcc
Confidence 112 3344322 1 367778887733333 47999999999 4456687777653
No 326
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=24.14 E-value=3.8e+02 Score=25.42 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=54.6
Q ss_pred ceehhhhhhhhhcCCc--EEEEEeccChhhHHHHHHhhccCCCCcccCCceEEEecccccCCcCCCccccChHHHHHHhh
Q 013483 41 RLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118 (442)
Q Consensus 41 pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G~~~al~~~~ 118 (442)
..+...++.+.++... .+++|-+...+...+.+.... + ..+.++..... +|-+++...+.
T Consensus 16 ~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-------~--~~v~~i~~~~N---------lG~agg~n~g~ 77 (305)
T COG1216 16 EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-------F--PNVRLIENGEN---------LGFAGGFNRGI 77 (305)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-------C--CcEEEEEcCCC---------ccchhhhhHHH
Confidence 4455566666665543 333344444444455554421 0 11444443332 45555555444
Q ss_pred hhhcCCCCCccC-eEEEEcCCeeeecC-HHHHHHHHHHcCCcEEE
Q 013483 119 WLFEDPRNKVIE-DVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (442)
Q Consensus 119 ~~l~~~~~~~~~-~~lv~~gD~i~~~~-l~~~l~~~~~~~~~~tl 161 (442)
....+. .+ .+++++-|+..+.+ +.++++.++..+..+.+
T Consensus 78 ~~a~~~----~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 78 KYALAK----GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred HHHhcC----CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 433220 23 69999999888777 68999988877665443
No 327
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=20.69 E-value=1e+02 Score=30.06 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=36.8
Q ss_pred cccceEEEEEeCCCCCCCccc-------cc---CCC-----ccceeecCccceehhhhhhhhhcCCcEEEEEe
Q 013483 5 DARTVAAVILGGGAGTRLYPL-------TK---QRA-----KPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62 (442)
Q Consensus 5 ~~~~~~aVILAaG~gtRl~pl-------t~---~~p-----K~Llpi~g~~pli~~~l~~l~~~gi~~i~iv~ 62 (442)
++++|.++||.| .|||..-- .. ..+ -+++.+. . |-|...++.|.+.|.++|+|+=
T Consensus 2 ~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~~-e-Psl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 2 DRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEFA-E-PNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEeccC-C-CCHHHHHHHHHHCCCCEEEEec
Confidence 456788999888 77875211 00 112 1344444 5 8899999999999999987763
No 328
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=20.68 E-value=7e+02 Score=23.28 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=28.8
Q ss_pred cChHHHHHHhhhhhcCCCCCccCeEEEEcCCeeeecC-HHHHHH
Q 013483 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQ 150 (442)
Q Consensus 108 ~G~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~ 150 (442)
.|.+.+.-.+..... .+.++++.+|+++..+ +.++++
T Consensus 74 f~~a~arN~g~~~A~------~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYAR------GDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcC------CCEEEEEcCCeeeCHHHHHHHHH
Confidence 477778777776665 4899999999998877 566666
Done!