Query 013484
Match_columns 442
No_of_seqs 139 out of 225
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4axd_A Inositol-pentakisphosph 100.0 3E-118 1E-122 913.9 34.1 436 1-442 6-442 (456)
2 2wul_A Glutaredoxin related pr 66.5 14 0.00049 30.6 6.7 53 192-252 33-87 (118)
3 3pes_A Uncharacterized protein 15.5 27 0.00092 26.5 -0.4 13 9-21 34-46 (85)
4 3gx8_A Monothiol glutaredoxin- 13.9 2.7E+02 0.0093 22.3 5.4 54 193-252 30-85 (121)
5 2wem_A Glutaredoxin-related pr 13.8 4E+02 0.014 21.3 6.4 52 193-252 34-87 (118)
6 1t1v_A SH3BGRL3, SH3 domain-bi 11.3 3.1E+02 0.011 20.4 4.7 37 214-252 34-71 (93)
7 2npb_A Selenoprotein W; struct 11.1 3E+02 0.01 21.7 4.5 19 239-257 42-62 (96)
8 3l4n_A Monothiol glutaredoxin- 9.8 4.9E+02 0.017 21.1 5.7 58 191-252 21-81 (127)
9 2k9u_B Filamin-binding LIM pro 8.5 1.5E+02 0.0053 17.7 1.3 10 375-384 11-20 (26)
10 2elu_A Zinc finger protein 406 8.1 59 0.002 20.7 -0.6 7 192-198 10-16 (37)
No 1
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase, phytic acid, protein kinase, I signalling; HET: ANP CIT; 2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A* 4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A* 3udt_A* 3uds_A*
Probab=100.00 E-value=3.4e-118 Score=913.91 Aligned_cols=436 Identities=58% Similarity=0.920 Sum_probs=403.9
Q ss_pred CccccccCCCCCeEEEeeCCceEEEEecCCCCCccceEEEEeeccCCCCCcchhhhhcCCCccccccchhhcccchhhcc
Q 013484 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNGGSVFGKHEQLLWGDNQELLS 80 (442)
Q Consensus 1 ~~~~~~~~d~~~w~Y~gEG~ANiV~~y~g~~~~~~gkvLRlrK~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 80 (442)
||++++++||+||+|+|||||||||+|+|++|.|+||||||||.+..+... +++.++.+++|++|+++|++++++++
T Consensus 6 ~~~~~~~~~~~dW~y~~eG~an~v~~y~g~~~~~~~~vLRlrK~~~~~~~~---~~~~~~~~~lt~~E~~~w~~~~~~~~ 82 (456)
T 4axd_A 6 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAI---KNSNGVVSVLTSDEQHLWRENNELIS 82 (456)
T ss_dssp CCCEECGGGGGGEEEEEECSSEEEEEECSSCTTTTTEEEEEEBCCCSCGGG---CCTTSCCCSSCHHHHHHTTTCHHHHT
T ss_pred hhhhhccCCHHHCEEeccCCcEEEEEecCCCccccceEEEEEccCCCcccc---cccccccccCcHHHhhhhhccccccc
Confidence 899999999999999999999999999999999999999999998765432 12334567899999999999999999
Q ss_pred cchhhHHHHHHHHHhhccCCCCCCCCCceEEEcCHHHHHHHHHHhcCCCCccccCCcccccCCceEEEecCCCCCCCCCC
Q 013484 81 SSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGIL 160 (442)
Q Consensus 81 ~~~~e~~~~~f~~~vi~PLlg~~~l~~~~lV~l~~~~l~~L~~~i~~~RP~~R~~~~~id~~~~~~ll~~D~t~~p~~~~ 160 (442)
++++|+..+.|++++|+||||++||+++++|.|+.+||++|++.+.++||++|++++.||+.+++|+||+|||.+|.+.+
T Consensus 83 ~~~~e~~~~~F~~~VI~PLLG~~~V~~~eLV~Lp~eFL~~L~~~i~~~RP~~R~~~~~lD~~~~~alL~~D~t~~p~~~~ 162 (456)
T 4axd_A 83 SPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLARVNAANVDTSHDSALILNDHSLFSQGIT 162 (456)
T ss_dssp CSSHHHHHHHHCCCCCHHHHCSTTBCCCEEEEECHHHHHHHHHHHHHHSCGGGTTSCCBCTTCCEEEEEECTTCSSSSCC
T ss_pred cchhhhhHHHHHHHHHHhhcCccccCCceEEEcCHHHHHHHHHHhhccCchhhcccccccccCceEEEccccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999998766
Q ss_pred CCCCeeEEEecccccccCCCCCcccccccccCCchHHHHHHhhhcccccCCCCCCCccCCCCCCHHHHHHHHHHHHcCCC
Q 013484 161 GEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240 (442)
Q Consensus 161 ~~~~~i~vEiKPKwgfl~~s~~~~~~~~~k~~~CR~c~~q~~K~~~~~~~~~s~yCPldLfsg~~~r~~~al~~L~~~Pq 240 (442)
+++++|+|||||||||+|+++++++++++|+++|||||||.+|.++|++++.|.|||||||||+.+||++||++|+.+||
T Consensus 163 ~~~~~i~VEIKPKwGflp~s~~i~~~~~~k~~~CRfCm~Q~~K~~~g~~~~~S~YCPLDLfSg~~~r~~~Al~~L~~~Pq 242 (456)
T 4axd_A 163 SGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 242 (456)
T ss_dssp TTCCCEEEEECCCCCSCCCSTTCCGGGGGGGTSCHHHHHHHHHHHTTSSSSCCSCCHHHHTSSCHHHHHHHHHHHHHSCT
T ss_pred CCCceEEEEEcccccccCCCCCCCcccccccccCHHHHHHHHHhcCCCCCcCCCCCcccccCCCHHHHHHHHHHHHhCCC
Confidence 67889999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeCCceeecCCCCCCCCCcchhhHHHHHHHhhhhhcCCCcchhhHHHHHHhhccCCchHHHHHHHhccCcCCcch
Q 013484 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEG 320 (442)
Q Consensus 241 NNlrif~~g~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~l~~~L~~s~vL~~L~~lQ~LD~~dIeg 320 (442)
||||||+||++||++.++|.+++...+.++|++.|..++.+.+|.+.+.|+++|+++|++++||++|+++|+||.+||||
T Consensus 243 NNlrvF~~G~~i~~~~~~g~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~lv~~~L~~s~vL~~Ll~~Q~lD~lDIEg 322 (456)
T 4axd_A 243 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEG 322 (456)
T ss_dssp TTEEEEETTEEEECCSCTTCCCCCHHHHHHHHHHTBTTBCSCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCSCHHH
T ss_pred ccEEEEECCEEeecCCCCCccchhHHHHHHHHHHHHHhccCcccchhHHHHHHHHHhcccchHHHHHHHHhcccccchhH
Confidence 99999999999999987777766656778899999999999899999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcCccchhccchhhhhhhcccccCCCChhhhHHHHHHHHHHhhhCceeEEEEeecCCCCCC-CCCCceeecc
Q 013484 321 AIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKSNEFS-GSYNSIYLES 399 (442)
Q Consensus 321 ~~~~~~~l~~~p~~~~~~l~~~~~~~~~~~l~~~~~~e~~~~l~~yllaaTaKDCSimIs~~~~~~~~~-~~~~~~~~~~ 399 (442)
++++|++++++||.+|.++... +.++.+|++|.+++.++|++|+||||||||||||+|+|...+.. ++.+++++++
T Consensus 323 ~~~ly~~~v~q~~~~~~~l~~~---~~~~~l~s~~~~e~~~~v~~yliaaTaKDCSiMIsl~p~~~~~~~~~~~~~~~~~ 399 (456)
T 4axd_A 323 AIHCYYDIINQPCPICREGRPL---EAELSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKP 399 (456)
T ss_dssp HHHHHHHHTTCCCTTTTTSSCC---HHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCTTSCCC-CCEEEEGG
T ss_pred HHHHHHHHhcCcchHHHHHHhH---HHHHHhhcCCHHHHHHHHHHHHHHHhhhcceEEEEeccccCCCCcCcccceeccC
Confidence 9999999999999999887322 44667899999999999999999999999999999999877765 3446799999
Q ss_pred CCceeEEEEEEEeCCCCCCCChHHHHHHHHHHHHHHHHHhhcC
Q 013484 400 TNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCYIQMLKSR 442 (442)
Q Consensus 400 ~~~~f~~~v~VVDLD~K~~~Kl~~w~~~D~~I~~~y~~~~~~~ 442 (442)
+++.|+|+|+||||||||++||+||+++|++|+++|.++++++
T Consensus 400 ~~~~f~~~v~viDLD~Kp~~~i~~~~~lD~~Iv~~y~~~~~~~ 442 (456)
T 4axd_A 400 TNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQKAE 442 (456)
T ss_dssp GTEEEEEEEEEECCCCCCTTHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCceeeEEEEEeCCCCchhhhHHHHhhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999763
No 2
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=66.54 E-value=14 Score=30.62 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=36.5
Q ss_pred CCchHHH--HHHhhhcccccCCCCCCCccCCCCCCHHHHHHHHHHHHcCCCccceeeeCCcee
Q 013484 192 SVTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 252 (442)
Q Consensus 192 ~~CR~c~--~q~~K~~~~~~~~~s~yCPldLfsg~~~r~~~al~~L~~~PqNNlrif~~g~~i 252 (442)
.+|.||. .+.++... ...|--.|+..+ ..++.+|..+-..|. -..||+||..|
T Consensus 33 P~C~fc~~ak~lL~~~g-----v~~~~~~~v~~~--~~~r~~l~~~sg~~T-vPqIFI~g~~I 87 (118)
T 2wul_A 33 PQCGFSNAVVQILRLHG-----VRDYAAYNVLDD--PELRQGIKDYSNWPT-IPQVYLNGEFV 87 (118)
T ss_dssp BSSHHHHHHHHHHHHTT-----CCSCEEEETTSC--HHHHHHHHHHHTCCS-SCEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHhC-----CcCeEeecccCC--HHHHHHHHHhccCCC-CCeEeECCEEE
Confidence 4699994 46666431 113666777544 468899999876653 46799999988
No 3
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=15.50 E-value=27 Score=26.47 Aligned_cols=13 Identities=23% Similarity=0.642 Sum_probs=10.9
Q ss_pred CCCCeEEEeeCCc
Q 013484 9 DAADWIYRGEGAA 21 (442)
Q Consensus 9 d~~~w~Y~gEG~A 21 (442)
-+++|.|.|||+.
T Consensus 34 ~~~~~~Y~~e~~~ 46 (85)
T 3pes_A 34 GPPEYCYPAEGGC 46 (85)
T ss_dssp SCGGGCBCCBCCE
T ss_pred CCccccccCCCCc
Confidence 4789999999864
No 4
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=13.94 E-value=2.7e+02 Score=22.31 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=31.8
Q ss_pred CchHHH--HHHhhhcccccCCCCCCCccCCCCCCHHHHHHHHHHHHcCCCccceeeeCCcee
Q 013484 193 VTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 252 (442)
Q Consensus 193 ~CR~c~--~q~~K~~~~~~~~~s~yCPldLfsg~~~r~~~al~~L~~~PqNNlrif~~g~~i 252 (442)
.|.||. .+.++.. .+. ...|--.|+..+ ..++.+|..+...+. -..||+||..|
T Consensus 30 ~Cp~C~~ak~lL~~~--gv~-~~~~~~~dv~~~--~~~~~~l~~~sg~~t-vP~vfI~g~~i 85 (121)
T 3gx8_A 30 KCGFSRATIGLLGNQ--GVD-PAKFAAYNVLED--PELREGIKEFSEWPT-IPQLYVNKEFI 85 (121)
T ss_dssp CTTHHHHHHHHHHHH--TBC-GGGEEEEECTTC--HHHHHHHHHHHTCCS-SCEEEETTEEE
T ss_pred CCccHHHHHHHHHHc--CCC-cceEEEEEecCC--HHHHHHHHHHhCCCC-CCeEEECCEEE
Confidence 699994 4455433 221 012555666433 457778877754422 34689999987
No 5
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=13.81 E-value=4e+02 Score=21.31 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=31.7
Q ss_pred CchHHH--HHHhhhcccccCCCCCCCccCCCCCCHHHHHHHHHHHHcCCCccceeeeCCcee
Q 013484 193 VTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 252 (442)
Q Consensus 193 ~CR~c~--~q~~K~~~~~~~~~s~yCPldLfsg~~~r~~~al~~L~~~PqNNlrif~~g~~i 252 (442)
.|.||. .+.++.. .+. .|--.|+..+ ..++.++..+-..+ .-..||+||..|
T Consensus 34 ~Cp~C~~ak~lL~~~--gv~---~~~~vdV~~d--~~~~~~l~~~tg~~-tvP~vfI~g~~I 87 (118)
T 2wem_A 34 QCGFSNAVVQILRLH--GVR---DYAAYNVLDD--PELRQGIKDYSNWP-TIPQVYLNGEFV 87 (118)
T ss_dssp SSHHHHHHHHHHHHT--TCC---CCEEEESSSC--HHHHHHHHHHHTCC-SSCEEEETTEEE
T ss_pred ccHHHHHHHHHHHHc--CCC---CCEEEEcCCC--HHHHHHHHHHhCCC-CcCeEEECCEEE
Confidence 699994 4445433 221 3666777533 45677777775432 134689999987
No 6
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=11.29 E-value=3.1e+02 Score=20.42 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHcCCCcc-ceeeeCCcee
Q 013484 214 EYDPLDLFSGSKERICKAIKALYTNPQNN-LRVFLNGSLI 252 (442)
Q Consensus 214 ~yCPldLfsg~~~r~~~al~~L~~~PqNN-lrif~~g~~i 252 (442)
.|--.|+... ...+.++..+...|+.. ..||+||..|
T Consensus 34 ~~~~~di~~~--~~~~~~l~~~~g~~~~~vP~ifi~g~~i 71 (93)
T 1t1v_A 34 QYQLVDISQD--NALRDEMRTLAGNPKATPPQIVNGNHYC 71 (93)
T ss_dssp CCEEEETTSC--HHHHHHHHHHTTCTTCCSCEEEETTEEE
T ss_pred ceEEEECCCC--HHHHHHHHHHhCCCCCCCCEEEECCEEE
Confidence 5777888543 34566777776644333 5789999877
No 7
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=11.07 E-value=3e+02 Score=21.69 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.5
Q ss_pred CC--ccceeeeCCceeecCCC
Q 013484 239 PQ--NNLRVFLNGSLIFGSLG 257 (442)
Q Consensus 239 Pq--NNlrif~~g~~i~~~~~ 257 (442)
|+ -.|.|++||.+|++-+.
T Consensus 42 p~~~G~FEV~vng~lV~SKk~ 62 (96)
T 2npb_A 42 PQVTGFFEVTVAGKLVHSKKR 62 (96)
T ss_dssp SSCCSCCEEEETTEEEEETTT
T ss_pred CCCCcEEEEEECCEEEEEEec
Confidence 55 66999999999998643
No 8
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=9.76 E-value=4.9e+02 Score=21.08 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=32.9
Q ss_pred cCCchHHH--HHHhhhcccccCCCCCCCccCCCCC-CHHHHHHHHHHHHcCCCccceeeeCCcee
Q 013484 191 RSVTRFQL--HQALKLSEQEISERSEYDPLDLFSG-SKERICKAIKALYTNPQNNLRVFLNGSLI 252 (442)
Q Consensus 191 ~~~CR~c~--~q~~K~~~~~~~~~s~yCPldLfsg-~~~r~~~al~~L~~~PqNNlrif~~g~~i 252 (442)
...|.||. .+.++.. +.+ .-.|--.++-.. +...++.++..+-..+ .-..||+||..|
T Consensus 21 k~~Cp~C~~ak~lL~~~-~~~--~v~~~~idid~~~d~~~~~~~l~~~~G~~-tVP~IfI~G~~I 81 (127)
T 3l4n_A 21 KSTCSYSKGMKELLENE-YQF--IPNYYIIELDKHGHGEELQEYIKLVTGRG-TVPNLLVNGVSR 81 (127)
T ss_dssp CTTCHHHHHHHHHHHHH-EEE--ESCCEEEEGGGSTTHHHHHHHHHHHHSCC-SSCEEEETTEEC
T ss_pred cCCCccHHHHHHHHHHh-ccc--CCCcEEEEecCCCCHHHHHHHHHHHcCCC-CcceEEECCEEE
Confidence 34699994 4455432 111 013554555332 4466778887775432 235789999977
No 9
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=8.50 E-value=1.5e+02 Score=17.67 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=7.8
Q ss_pred eeEEEEeecC
Q 013484 375 CSLMICFRPK 384 (442)
Q Consensus 375 CSimIs~~~~ 384 (442)
-||||++.+.
T Consensus 11 SSvFITLapp 20 (26)
T 2k9u_B 11 SSVFITLAPP 20 (26)
T ss_dssp EEEEEEECCS
T ss_pred eeEEEEecCc
Confidence 4899999864
No 10
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=8.08 E-value=59 Score=20.73 Aligned_cols=7 Identities=29% Similarity=0.235 Sum_probs=5.2
Q ss_pred CCchHHH
Q 013484 192 SVTRFQL 198 (442)
Q Consensus 192 ~~CR~c~ 198 (442)
.-||||-
T Consensus 10 qhcrfck 16 (37)
T 2elu_A 10 QHCRFCK 16 (37)
T ss_dssp CEETTTT
T ss_pred HHHHHHH
Confidence 4599993
Done!