Query 013485
Match_columns 442
No_of_seqs 254 out of 1406
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1.3E-34 2.9E-39 303.7 19.8 351 74-441 47-414 (472)
2 KOG1338 Uncharacterized conser 100.0 4.1E-32 8.9E-37 264.6 15.8 274 76-357 9-314 (466)
3 PF00856 SET: SET domain; Int 99.7 4.4E-18 9.6E-23 150.6 8.7 67 240-307 94-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.5 1.1E-14 2.3E-19 126.1 6.8 103 338-442 1-104 (128)
5 smart00317 SET SET (Su(var)3-9 98.9 2E-09 4.2E-14 90.5 6.3 46 261-306 69-116 (116)
6 KOG2589 Histone tail methylase 95.9 0.0076 1.6E-07 60.0 4.0 46 260-308 192-238 (453)
7 KOG1085 Predicted methyltransf 95.1 0.018 3.9E-07 55.6 3.4 49 267-316 335-386 (392)
8 KOG4442 Clathrin coat binding 92.0 0.15 3.2E-06 55.0 3.8 42 266-307 194-237 (729)
9 KOG1080 Histone H3 (Lys4) meth 91.5 0.16 3.4E-06 57.9 3.6 67 240-307 912-983 (1005)
10 KOG1079 Transcriptional repres 91.0 0.22 4.8E-06 53.5 3.8 42 266-307 666-709 (739)
11 COG2940 Proteins containing SE 87.1 0.32 6.9E-06 51.7 1.8 42 267-308 407-450 (480)
12 KOG1082 Histone H3 (Lys9) meth 72.3 2.5 5.4E-05 43.3 2.3 44 267-310 274-323 (364)
13 KOG1083 Putative transcription 68.7 4.4 9.6E-05 46.1 3.3 43 267-310 1252-1297(1306)
14 KOG1085 Predicted methyltransf 63.0 8.1 0.00018 37.8 3.5 35 91-125 256-290 (392)
15 KOG2084 Predicted histone tail 55.8 18 0.00039 37.6 5.1 60 259-320 199-265 (482)
16 KOG1141 Predicted histone meth 51.5 9.3 0.0002 42.5 2.0 53 267-319 1191-1253(1262)
17 COG1188 Ribosome-associated he 48.3 13 0.00027 30.8 1.9 54 233-308 8-61 (100)
18 TIGR02059 swm_rep_I cyanobacte 41.3 51 0.0011 27.3 4.4 32 279-310 68-99 (101)
19 smart00317 SET SET (Su(var)3-9 34.5 48 0.001 26.6 3.5 28 91-118 83-113 (116)
20 PF10281 Ish1: Putative stress 29.4 50 0.0011 21.9 2.2 16 76-91 6-21 (38)
21 KOG2461 Transcription factor B 28.5 53 0.0012 34.1 3.3 35 285-319 121-155 (396)
22 KOG4442 Clathrin coat binding 27.4 55 0.0012 36.0 3.2 29 91-119 120-148 (729)
23 PF08666 SAF: SAF domain; Int 25.5 42 0.00091 24.4 1.4 15 103-117 2-16 (63)
24 KOG1338 Uncharacterized conser 24.6 15 0.00032 37.7 -1.5 78 259-340 269-348 (466)
25 COG2969 SspB Stringent starvat 20.2 1.2E+02 0.0025 26.8 3.2 50 76-129 13-63 (155)
26 PF11629 Mst1_SARAH: C termina 20.1 3.4E+02 0.0074 19.4 5.5 40 182-223 5-44 (49)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=303.66 Aligned_cols=351 Identities=33% Similarity=0.512 Sum_probs=263.4
Q ss_pred hcHHHHHHHHHhCCCCCCCcEEEeeCCCceEEEEcccCCCCCEEEEcCCCCcccccCCcCCchhhhhhccCCCCChHHHH
Q 013485 74 ENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLA 153 (442)
Q Consensus 74 ~~~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~lt~~~~~~~~~~~~~l~~~~l~~~~~La 153 (442)
++...+..|.+.+|....+..+......++++.+..++..++.+..+|....+......... ..+ ..|+
T Consensus 47 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~l~ 115 (472)
T KOG1337|consen 47 ENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYND---------LLP--IALA 115 (472)
T ss_pred cccccceeccccCCcchhhhccccccccccchhhhhhhhhhhhhccCCchhhhccccccCcc---------ccH--HHHH
Confidence 34556667777777665333322222345666666666677766666666655554432111 011 5789
Q ss_pred HHHHHHhhcCCCCCcHHHHHhcCCCCCCccccCHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---
Q 013485 154 TYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFP--- 230 (442)
Q Consensus 154 l~Ll~E~~~g~~S~w~pYl~~LP~~~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~y~~~~~~l~~~~~~~f~--- 230 (442)
++++.|...+..|.|.+|+..||..+++|++|..+++. .|.+++....+..+...++..|..+.. +...++..++
T Consensus 116 ~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (472)
T KOG1337|consen 116 LFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVK-SLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLFGSDL 193 (472)
T ss_pred HHHHHhhhccccccchhhhhhchhhcCCccccCHHHHH-HhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccccccccc
Confidence 99999999888899999999999999999999999997 599999998888887777776665554 4445555443
Q ss_pred ccCCCHHHHHHHHhcccccceecCCC--------CCceEEEeecccCCCCCCcceeEEEeCCCCeEEEEecCcCCCCcEE
Q 013485 231 EEVFNMETFKWSFGILFSRLVRLPSM--------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQV 302 (442)
Q Consensus 231 ~~~~t~e~f~WA~~~V~SRa~~~~~~--------~~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeeV 302 (442)
...++++.|.||+++|+||+|+.+.. ++..+|+|++||+||++.. ....|+..++.+.+++.++|++||||
T Consensus 194 ~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v~~geev 272 (472)
T KOG1337|consen 194 FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDVSAGEEV 272 (472)
T ss_pred cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeeecCCCeE
Confidence 23489999999999999999997643 3468999999999999998 55677777779999999999999999
Q ss_pred EecCCCCChHHHHHhCCcccCCCCCCCCeEEEecccCCCcccHHHHHHHHHHcCCCCcceeeeecCCCc-HHHHHHHHHH
Q 013485 303 FISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWP-LELMAYAYLV 381 (442)
Q Consensus 303 ~isYG~~sN~~LL~~YGFv~~~~~Np~D~v~l~l~l~~~d~~~~~K~~~L~~~gl~~~~~f~l~~~g~p-~~Lla~lRl~ 381 (442)
||+||+++|++||++||||.+ +||+|.|.|.+.+...|+.+..|...+.++++.....|.+...+.+ .+++...+++
T Consensus 273 fi~YG~~~N~eLL~~YGFv~~--~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (472)
T KOG1337|consen 273 FINYGPKSNAELLLHYGFVEE--DNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLLLFLLL 350 (472)
T ss_pred EEecCCCchHHHHHhcCCCCC--CCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhhhhhhh
Confidence 999999999999999999988 9999999999999999999999999999999999889998888776 3333333334
Q ss_pred cCCcchhhhHHHHHHHh---ccccccc-cCCCCchHHHHHHHHHHHH-HHHHHhhcccchhhhcc
Q 013485 382 VSPPSMKGKFEEMAAAA---SNKMTSK-KDIKCPEIDEQALQFILDS-CESSISKYSRFLQVKEL 441 (442)
Q Consensus 382 ~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~nE~~~~~~L~~~-c~~~l~~y~ttie~D~~ 441 (442)
.+..+.. ..+.+.... ....+.. .-....++|...++.+.+. |...+..+.+++++|+.
T Consensus 351 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 414 (472)
T KOG1337|consen 351 DALSERL-ESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDES 414 (472)
T ss_pred ccccccc-hhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhh
Confidence 4433222 111111111 1111122 2233489999999999999 99999999999988765
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=4.1e-32 Score=264.63 Aligned_cols=274 Identities=22% Similarity=0.338 Sum_probs=216.1
Q ss_pred HHHHHHHHHhCC-CCC-CCcEEEeeC----CCceEEEEcccCCCCCEEEEcCCCCcccccCCcC---CchhhhhhccCCC
Q 013485 76 ASTLQKWLSDSG-LPP-QKMAIQKVD----VGERGLVALKNIRKGEKLLFVPPSLVITADSKWS---CPEAGEVLKQCSV 146 (442)
Q Consensus 76 ~~~l~~Wl~~~G-~~~-~~v~i~~~~----~~GrGl~A~~~I~~ge~ll~IP~~~~lt~~~~~~---~~~~~~~l~~~~l 146 (442)
.+.|+.|++..+ ... ++|.+.+.+ ..|+|++|+++|++||.++.+|++.+++..+... -|+..+++- ++.
T Consensus 9 ~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L-ne~ 87 (466)
T KOG1338|consen 9 AKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL-NEV 87 (466)
T ss_pred HHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh-hcC
Confidence 789999999887 443 678777654 2489999999999999999999999999877421 122222221 578
Q ss_pred CChHHHHHHHHHHhhcCCCCCcHHHHHhcCCC--CCCccccCHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013485 147 PDWPLLATYLISEASFEKSSRWSNYISALPRQ--PYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSK 224 (442)
Q Consensus 147 ~~~~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~--~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~y~~~~~~l~~~ 224 (442)
++|..|++.|++|...+..|+|+||+..+|+. .++|+||+++|++.+++|+ +.++..+..+.+..+|.....++.+.
T Consensus 88 gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~st-vlee~~Kd~aeI~~~~i~~i~pf~~~ 166 (466)
T KOG1338|consen 88 GSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCST-VLEETVKDKAEIEKDFIFVIQPFKQH 166 (466)
T ss_pred CcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcc-cchhhHhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877779999999999986 4789999999998655554 55558888899999999999999999
Q ss_pred CCCCCCccCCCHHHHHHHHhcccccceecCCC-------------CCceEEEeecccCCCCCC-cceeEEEeCCCCeEEE
Q 013485 225 YPDLFPEEVFNMETFKWSFGILFSRLVRLPSM-------------DGRVALVPWADMLNHSCE-VETFLDYDKSSQGVVF 290 (442)
Q Consensus 225 ~~~~f~~~~~t~e~f~WA~~~V~SRa~~~~~~-------------~~~~~LvP~~Dm~NH~~~-~~~~~~~d~~~~~~~l 290 (442)
+|.+|.. +++++|..+++++.+.+|.++-. -...+|+|.+||+||+.. .|+.+.|+ ++|+.|
T Consensus 167 ~p~vfs~--~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~--~NcL~m 242 (466)
T KOG1338|consen 167 CPIVFSR--PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYE--DNCLEM 242 (466)
T ss_pred Ccchhcc--cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceecc--Ccceee
Confidence 9999864 89999999999999999987532 013699999999999998 78888884 799999
Q ss_pred EecCcCCCCcEEEecCCCCChHHHHHhCCcccCCCCC-------CCCeEEEecccCCCcccHHHHHHHHHHcCC
Q 013485 291 TTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTN-------PSDSVELPLSLKKSDKCYKEKLEALRKYGL 357 (442)
Q Consensus 291 ~a~r~i~~GeeV~isYG~~sN~~LL~~YGFv~~~~~N-------p~D~v~l~l~l~~~d~~~~~K~~~L~~~gl 357 (442)
+|+|+|.+|+||+++||-++|. |++||.+.-.+.. -+|.+++-.+.+.+++.+..|.-++..+|.
T Consensus 243 va~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~nt 314 (466)
T KOG1338|consen 243 VADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHNT 314 (466)
T ss_pred eecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhccc
Confidence 9999999999999999999988 7777776541110 122333334455566777777655555543
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.74 E-value=4.4e-18 Score=150.60 Aligned_cols=67 Identities=36% Similarity=0.636 Sum_probs=50.8
Q ss_pred HHHHhcccccceecCCCCCceEEEeecccCCCCCCcceeEEEe--CCCCeEEEEecCcCCCCcEEEecCC
Q 013485 240 KWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYD--KSSQGVVFTTDRQYQPGEQVFISYG 307 (442)
Q Consensus 240 ~WA~~~V~SRa~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~d--~~~~~~~l~a~r~i~~GeeV~isYG 307 (442)
.|....+..+...... .+..+|+|++||+||++.+|+.+.++ ..+++++++|.|+|++||||||+||
T Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 94 SWTRSDFSSRSFSEDD-RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp HHHHHEEEEEEETTEE-EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccceeeecccccccc-ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 3444444444433221 12589999999999999999998887 5789999999999999999999998
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.54 E-value=1.1e-14 Score=126.08 Aligned_cols=103 Identities=29% Similarity=0.450 Sum_probs=82.6
Q ss_pred cCCCcccHHHHHHHHHHcCCCCcceeeeecCCC-cHHHHHHHHHHcCCcchhhhHHHHHHHhccccccccCCCCchHHHH
Q 013485 338 LKKSDKCYKEKLEALRKYGLSASECFPIQITGW-PLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQ 416 (442)
Q Consensus 338 l~~~d~~~~~K~~~L~~~gl~~~~~f~l~~~g~-p~~Lla~lRl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nE~~ 416 (442)
++++||+++.|.++|+.+|+.....|.+..++. |.+|++++||++++++++..+......... .......+.+||.+
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~--~~~~~~ls~~nE~~ 78 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGPLPPELLAALRVLLMTEEELRALKSLADSSEW--SDRSEPLSPENEIA 78 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSSSHHHHHHHHHHHHSCHHHHHHHHHCGTTTHC--CHCCC-SBHHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCCCCHHHHHHHHHHHcChHHHHHHHHhhccccc--ccccCCCchhhHHH
Confidence 467899999999999999999988899999886 999999999999999988777554222111 11234556999999
Q ss_pred HHHHHHHHHHHHHhhcccchhhhccC
Q 013485 417 ALQFILDSCESSISKYSRFLQVKELL 442 (442)
Q Consensus 417 ~~~~L~~~c~~~l~~y~ttie~D~~l 442 (442)
++++|.+.|..+|++|+||+|||+.+
T Consensus 79 ~l~~L~~~~~~~L~~y~TtleeD~~~ 104 (128)
T PF09273_consen 79 ALQFLIDLCEARLSAYPTTLEEDEEL 104 (128)
T ss_dssp HHHHHHHHHHHHHTTSSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999999863
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.92 E-value=2e-09 Score=90.45 Aligned_cols=46 Identities=30% Similarity=0.440 Sum_probs=40.6
Q ss_pred EEEeecccCCCCCCcceeEEEeCCCC--eEEEEecCcCCCCcEEEecC
Q 013485 261 ALVPWADMLNHSCEVETFLDYDKSSQ--GVVFTTDRQYQPGEQVFISY 306 (442)
Q Consensus 261 ~LvP~~Dm~NH~~~~~~~~~~d~~~~--~~~l~a~r~i~~GeeV~isY 306 (442)
.+.|+++++||++.+|+.+.+...++ .+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 48999999999999999887764444 59999999999999999999
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=95.92 E-value=0.0076 Score=59.99 Aligned_cols=46 Identities=26% Similarity=0.446 Sum_probs=37.5
Q ss_pred eEEEeecccCCCCCCcceeEEEeCC-CCeEEEEecCcCCCCcEEEecCCC
Q 013485 260 VALVPWADMLNHSCEVETFLDYDKS-SQGVVFTTDRQYQPGEQVFISYGK 308 (442)
Q Consensus 260 ~~LvP~~Dm~NH~~~~~~~~~~d~~-~~~~~l~a~r~i~~GeeV~isYG~ 308 (442)
.-|=|-+ ++||++.+||.+ ... .+...+++.|||++||||+-.||.
T Consensus 192 LwLGPaa-fINHDCrpnCkF--vs~g~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRPNCKF--VSTGRDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred heeccHH-hhcCCCCCCcee--ecCCCceeeeehhhcCCCCceeEEeecc
Confidence 3455644 899999999964 333 378899999999999999999998
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=95.14 E-value=0.018 Score=55.62 Aligned_cols=49 Identities=22% Similarity=0.456 Sum_probs=39.9
Q ss_pred ccCCCCCCccee---EEEeCCCCeEEEEecCcCCCCcEEEecCCCCChHHHHH
Q 013485 267 DMLNHSCEVETF---LDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLL 316 (442)
Q Consensus 267 Dm~NH~~~~~~~---~~~d~~~~~~~l~a~r~i~~GeeV~isYG~~sN~~LL~ 316 (442)
-++||+...|+. +.+| ....++++|.++|.+|||+...||++|-+-++.
T Consensus 335 RLINHS~~gNl~TKvv~Id-g~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEID-GSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcceeeEEEec-CCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 488999987754 3445 567899999999999999999999998776553
No 8
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=0.15 Score=55.02 Aligned_cols=42 Identities=24% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccCCCCCCcceeEE-Ee-CCCCeEEEEecCcCCCCcEEEecCC
Q 013485 266 ADMLNHSCEVETFLD-YD-KSSQGVVFTTDRQYQPGEQVFISYG 307 (442)
Q Consensus 266 ~Dm~NH~~~~~~~~~-~d-~~~~~~~l~a~r~i~~GeeV~isYG 307 (442)
+=|+||++++||.+. |. .+...+-|-+.+.|++||||+..|+
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 357999999998653 32 1234556779999999999999997
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=91.48 E-value=0.16 Score=57.89 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=44.5
Q ss_pred HHHHhcccccceecCCCC--CceEEEeecccCCCCCCcceeEE---EeCCCCeEEEEecCcCCCCcEEEecCC
Q 013485 240 KWSFGILFSRLVRLPSMD--GRVALVPWADMLNHSCEVETFLD---YDKSSQGVVFTTDRQYQPGEQVFISYG 307 (442)
Q Consensus 240 ~WA~~~V~SRa~~~~~~~--~~~~LvP~~Dm~NH~~~~~~~~~---~d~~~~~~~l~a~r~i~~GeeV~isYG 307 (442)
.-...+-.|..|.+...- +..-.-=++=++||++.+||... .+ +...++|+|.|+|.+||||+.+|-
T Consensus 912 Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~-g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 912 YERMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNCYAKVITVE-GDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred HhccCcccceeeecccceEEeccccCchhheeecccCCCceeeEEEec-CeeEEEEEEecccccCceeeeecc
Confidence 334455556666554210 01112234568999999998643 33 456899999999999999999994
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=90.96 E-value=0.22 Score=53.51 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=34.2
Q ss_pred cccCCCCCCcceeEE--EeCCCCeEEEEecCcCCCCcEEEecCC
Q 013485 266 ADMLNHSCEVETFLD--YDKSSQGVVFTTDRQYQPGEQVFISYG 307 (442)
Q Consensus 266 ~Dm~NH~~~~~~~~~--~d~~~~~~~l~a~r~i~~GeeV~isYG 307 (442)
+-++||+.++||... +-.....+-+.|.|.|.+|||+|..|+
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 458999999998632 223567788999999999999999996
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=87.09 E-value=0.32 Score=51.71 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=34.6
Q ss_pred ccCCCCCCcceeEEEeCCCC--eEEEEecCcCCCCcEEEecCCC
Q 013485 267 DMLNHSCEVETFLDYDKSSQ--GVVFTTDRQYQPGEQVFISYGK 308 (442)
Q Consensus 267 Dm~NH~~~~~~~~~~d~~~~--~~~l~a~r~i~~GeeV~isYG~ 308 (442)
=++||++.+|+........+ .+.+++.+||++||||++.||.
T Consensus 407 r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 407 RFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred ceeecCCCCCcceecccccccceeeecccccchhhhhhcccccc
Confidence 38999999998876654444 6677899999999999999974
No 12
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=72.35 E-value=2.5 Score=43.29 Aligned_cols=44 Identities=30% Similarity=0.532 Sum_probs=32.2
Q ss_pred ccCCCCCCcceeEE---EeC---CCCeEEEEecCcCCCCcEEEecCCCCC
Q 013485 267 DMLNHSCEVETFLD---YDK---SSQGVVFTTDRQYQPGEQVFISYGKKS 310 (442)
Q Consensus 267 Dm~NH~~~~~~~~~---~d~---~~~~~~l~a~r~i~~GeeV~isYG~~s 310 (442)
=++||++.+|..+. ++. .--.+.+.|.++|.+|+|++..||...
T Consensus 274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 47899999987543 221 112356789999999999999999643
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=68.67 E-value=4.4 Score=46.06 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=32.1
Q ss_pred ccCCCCCCcceeE-EEeCCCC--eEEEEecCcCCCCcEEEecCCCCC
Q 013485 267 DMLNHSCEVETFL-DYDKSSQ--GVVFTTDRQYQPGEQVFISYGKKS 310 (442)
Q Consensus 267 Dm~NH~~~~~~~~-~~d~~~~--~~~l~a~r~i~~GeeV~isYG~~s 310 (442)
-+.||++.+||.. .|. .+| .+.+.|.|||.+||||+..|..++
T Consensus 1252 RfinhscKPNc~~qkwS-VNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWS-VNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred cccccccCCCCcccccc-ccceeeeeeeecCCCCCCceEEEeccccc
Confidence 3678999888864 343 233 356789999999999999997643
No 14
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=63.01 E-value=8.1 Score=37.82 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.1
Q ss_pred CCcEEEeeCCCceEEEEcccCCCCCEEEEcCCCCc
Q 013485 91 QKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLV 125 (442)
Q Consensus 91 ~~v~i~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ 125 (442)
+++.+....+.|||++|+++++.|+.|+.---.++
T Consensus 256 egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdli 290 (392)
T KOG1085|consen 256 EGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLI 290 (392)
T ss_pred cceeEEeeccccceeEeecccccCceEEEEeccee
Confidence 67888888999999999999999999987655543
No 15
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=55.83 E-value=18 Score=37.61 Aligned_cols=60 Identities=28% Similarity=0.408 Sum_probs=45.2
Q ss_pred ceEEEeecccCCCCCCcceeEEEeCCCCeEEEEecCcCCCCc-EEEecCCC--CC----hHHHHHhCCc
Q 013485 259 RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGE-QVFISYGK--KS----NGELLLSYGF 320 (442)
Q Consensus 259 ~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~Ge-eV~isYG~--~s----N~~LL~~YGF 320 (442)
..+|.|..=++||+..+|+.+.|+ .....+.+...+.+++ +++++|-. .+ ...|-..|.|
T Consensus 199 ~~~l~~~~~~~~hsC~pn~~~~~~--~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 199 GRGLFPGSSLFNHSCFPNISVIFD--GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeeecccchhcccCCCCCeEEEEC--CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 478999999999999999987775 4566666777777766 99999985 22 3455666666
No 16
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=51.50 E-value=9.3 Score=42.53 Aligned_cols=53 Identities=25% Similarity=0.363 Sum_probs=37.5
Q ss_pred ccCCCCCCcceeE---EEeCCCCeE---EEEecCcCCCCcEEEecCCC----CChHHHHHhCC
Q 013485 267 DMLNHSCEVETFL---DYDKSSQGV---VFTTDRQYQPGEQVFISYGK----KSNGELLLSYG 319 (442)
Q Consensus 267 Dm~NH~~~~~~~~---~~d~~~~~~---~l~a~r~i~~GeeV~isYG~----~sN~~LL~~YG 319 (442)
-++||++.+|..+ .+|..+-.| -+-+.+-|++|.|++..||= -.--+|+.+.|
T Consensus 1191 RfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1191 RFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 3899999998654 466544444 34578899999999999973 33455666555
No 17
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=48.26 E-value=13 Score=30.80 Aligned_cols=54 Identities=13% Similarity=0.354 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhcccccceecCCCCCceEEEeecccCCCCCCcceeEEEeCCCCeEEEEecCcCCCCcEEEecCCC
Q 013485 233 VFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGK 308 (442)
Q Consensus 233 ~~t~e~f~WA~~~V~SRa~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i~~GeeV~isYG~ 308 (442)
..-+|.|+|+.-++-+|+..- ||++- ..+.+| +-...+.++++.|++|.|.||.
T Consensus 8 ~mRLDKwL~~aR~~KrRslAk-------------~~~~~-----GrV~vN----G~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 8 RMRLDKWLWAARFIKRRSLAK-------------EMIEG-----GRVKVN----GQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred ceehHHHHHHHHHhhhHHHHH-------------HHHHC-----CeEEEC----CEEcccccccCCCCEEEEEeCC
Confidence 456899999999999998742 22221 234553 2334888999999999999986
No 18
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=41.28 E-value=51 Score=27.28 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.7
Q ss_pred EEEeCCCCeEEEEecCcCCCCcEEEecCCCCC
Q 013485 279 LDYDKSSQGVVFTTDRQYQPGEQVFISYGKKS 310 (442)
Q Consensus 279 ~~~d~~~~~~~l~a~r~i~~GeeV~isYG~~s 310 (442)
+..+.....+.+...+.|..||||.++|-.-+
T Consensus 68 VsV~~s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 68 VSLGGSNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EEEcCcccEEEEEecccccCCCEEEEEeeCCC
Confidence 34555566899999999999999999996543
No 19
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=34.53 E-value=48 Score=26.64 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=19.8
Q ss_pred CCcEEEeeCCCc---eEEEEcccCCCCCEEE
Q 013485 91 QKMAIQKVDVGE---RGLVALKNIRKGEKLL 118 (442)
Q Consensus 91 ~~v~i~~~~~~G---rGl~A~~~I~~ge~ll 118 (442)
+++.+......| ..++|+++|++||.|.
T Consensus 83 pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 83 PNCELLFVEVNGDSRIVIFALRDIKPGEELT 113 (116)
T ss_pred CCEEEEEEEECCCcEEEEEECCCcCCCCEEe
Confidence 455555443332 6789999999999885
No 20
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.38 E-value=50 Score=21.94 Aligned_cols=16 Identities=38% Similarity=0.856 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCCCC
Q 013485 76 ASTLQKWLSDSGLPPQ 91 (442)
Q Consensus 76 ~~~l~~Wl~~~G~~~~ 91 (442)
..+|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3689999999999874
No 21
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=28.54 E-value=53 Score=34.07 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=31.2
Q ss_pred CCeEEEEecCcCCCCcEEEecCCCCChHHHHHhCC
Q 013485 285 SQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYG 319 (442)
Q Consensus 285 ~~~~~l~a~r~i~~GeeV~isYG~~sN~~LL~~YG 319 (442)
+..+-.++.|+|++|+|+.+-||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 45677889999999999999999988889888888
No 22
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.40 E-value=55 Score=36.04 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCcEEEeeCCCceEEEEcccCCCCCEEEE
Q 013485 91 QKMAIQKVDVGERGLVALKNIRKGEKLLF 119 (442)
Q Consensus 91 ~~v~i~~~~~~GrGl~A~~~I~~ge~ll~ 119 (442)
-+|++-.+...|.||.|.++|++|+.|+.
T Consensus 120 A~vevF~Te~KG~GLRA~~dI~~g~FI~E 148 (729)
T KOG4442|consen 120 AKVEVFLTEKKGCGLRAEEDIPKGQFILE 148 (729)
T ss_pred CceeEEEecCcccceeeccccCCCcEEee
Confidence 35777777789999999999999999886
No 23
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=25.50 E-value=42 Score=24.37 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=11.1
Q ss_pred eEEEEcccCCCCCEE
Q 013485 103 RGLVALKNIRKGEKL 117 (442)
Q Consensus 103 rGl~A~~~I~~ge~l 117 (442)
+-++|+++|++|+.|
T Consensus 2 ~vvVA~~di~~G~~i 16 (63)
T PF08666_consen 2 RVVVAARDIPAGTVI 16 (63)
T ss_dssp SEEEESSTB-TT-BE
T ss_pred cEEEEeCccCCCCEE
Confidence 358999999999987
No 24
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=15 Score=37.71 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=57.2
Q ss_pred ceEEEeecccCCCCCCcc--eeEEEeCCCCeEEEEecCcCCCCcEEEecCCCCChHHHHHhCCcccCCCCCCCCeEEEec
Q 013485 259 RVALVPWADMLNHSCEVE--TFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPL 336 (442)
Q Consensus 259 ~~~LvP~~Dm~NH~~~~~--~~~~~d~~~~~~~l~a~r~i~~GeeV~isYG~~sN~~LL~~YGFv~~~~~Np~D~v~l~l 336 (442)
..+++|+.+|+|-.-... +.+-+| ..+..++++.|.+ |.|..++|+...+.++...|||.-..+--|++.+-+ +
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D-~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv-~ 344 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMD-VPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV-I 344 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhc-CCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee-e
Confidence 468999999998775422 112344 4677788899988 999999999999999999999543324567787666 3
Q ss_pred ccCC
Q 013485 337 SLKK 340 (442)
Q Consensus 337 ~l~~ 340 (442)
.+++
T Consensus 345 glpq 348 (466)
T KOG1338|consen 345 GLPQ 348 (466)
T ss_pred echh
Confidence 4444
No 25
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=20.20 E-value=1.2e+02 Score=26.78 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEeeCCCceEEEE-cccCCCCCEEEEcCCCCccccc
Q 013485 76 ASTLQKWLSDSGLPPQKMAIQKVDVGERGLVA-LKNIRKGEKLLFVPPSLVITAD 129 (442)
Q Consensus 76 ~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGl~A-~~~I~~ge~ll~IP~~~~lt~~ 129 (442)
+.+|.+||.+|+.+. .+-+.- .--|+-. .+-++-|++|+-|-.+++-+.+
T Consensus 13 lRA~yeWl~DN~~TP-hlvVd~---t~~Gv~VP~eyvkDgqIVLNvs~~Av~nL~ 63 (155)
T COG2969 13 LRALYEWLLDNQLTP-HLVVDV---TLPGVKVPMEYVRDGQIVLNIAPRAVGNLE 63 (155)
T ss_pred HHHHHHHHhcCCCCc-eEEEEc---cccCccCCHHHccCCeEEEEeCcccccceE
Confidence 689999999999984 343321 1223422 3456779999999888775554
No 26
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.11 E-value=3.4e+02 Score=19.45 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=28.2
Q ss_pred ccccCHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013485 182 LLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFS 223 (442)
Q Consensus 182 pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~y~~~~~~l~~ 223 (442)
.-+|+.+||+..| +.+-..+.+-++.++..|..-.++|..
T Consensus 5 Lk~ls~~eL~~rl--~~LD~~ME~Eieelr~RY~~KRqPIld 44 (49)
T PF11629_consen 5 LKFLSYEELQQRL--ASLDPEMEQEIEELRQRYQAKRQPILD 44 (49)
T ss_dssp GGGS-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhccHHH
Confidence 3478999997544 345556666678899999988887764
Done!