BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013486
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQK|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp And Ip6
pdb|4AXF|A Chain A, Insp5 2-K In Complex With Ins(3,4,5,6)p4 Plus Amppnp
Length = 456
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/438 (59%), Positives = 330/438 (75%), Gaps = 11/438 (2%)
Query: 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNG 60
M+++L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 6 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV-- 63
Query: 61 GSVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLES 120
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE
Sbjct: 64 -SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLEC 122
Query: 121 VQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPIS 180
V K VT QRP WRV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP S
Sbjct: 123 VDKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTS 182
Query: 181 RFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240
RFI +EN +K SV+RF++HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQ
Sbjct: 183 RFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 242
Query: 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQ 300
NN RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+
Sbjct: 243 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYG 302
Query: 301 AGILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESL 360
+G+LDRLLE+QKLD DIEGAIH YY+II+QPC +CRE +A SLH++P++ESL
Sbjct: 303 SGVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICREGRPLEAE---LSLHALPLDESL 359
Query: 361 KIVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKP 417
KIVK+YLIAATAKDCS+MI F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 360 KIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKP 417
Query: 418 FKKMEEHYAKDKKISSCY 435
K+ME +Y DKKI S Y
Sbjct: 418 LKRMESYYKLDKKIISFY 435
>pdb|3UDS|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDS|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDT|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5.
pdb|3UDT|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5
Length = 493
Score = 503 bits (1295), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/438 (58%), Positives = 330/438 (75%), Gaps = 11/438 (2%)
Query: 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNG 60
M+++L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 35 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV-- 92
Query: 61 GSVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLES 120
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE
Sbjct: 93 -SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLEC 151
Query: 121 VQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPIS 180
V K VT QRP WRV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP S
Sbjct: 152 VDKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTS 211
Query: 181 RFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240
RFI +EN +K SV+RF++HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQ
Sbjct: 212 RFIGKENILKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 271
Query: 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQ 300
NN RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+
Sbjct: 272 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYG 331
Query: 301 AGILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESL 360
+G+LDRLLE+QKLD DIEGAIH YY+II+QPC +C+E +A SLH++P++ESL
Sbjct: 332 SGVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAE---LSLHALPLDESL 388
Query: 361 KIVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKP 417
KIVK+YLIAATAKDCS+MI F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 389 KIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKP 446
Query: 418 FKKMEEHYAKDKKISSCY 435
K+ME +Y DKKI S Y
Sbjct: 447 LKRMESYYKLDKKIISFY 464
>pdb|2XAL|A Chain A, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAL|B Chain B, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAM|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAM|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAN|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAN|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAO|A Chain A, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAO|B Chain B, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAR|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6.
pdb|2XAR|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6
Length = 451
Score = 503 bits (1294), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/438 (58%), Positives = 330/438 (75%), Gaps = 11/438 (2%)
Query: 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNG 60
M+++L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 1 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV-- 58
Query: 61 GSVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLES 120
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE
Sbjct: 59 -SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLEC 117
Query: 121 VQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPIS 180
V K VT QRP WRV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP S
Sbjct: 118 VDKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTS 177
Query: 181 RFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240
RFI +EN +K SV+RF++HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQ
Sbjct: 178 RFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 237
Query: 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQ 300
NN RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+
Sbjct: 238 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYG 297
Query: 301 AGILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESL 360
+G+LDRLLE+QKLD DIEGAIH YY+II+QPC +C+E +A SLH++P++ESL
Sbjct: 298 SGVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAE---LSLHALPLDESL 354
Query: 361 KIVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKP 417
KIVK+YLIAATAKDCS+MI F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 355 KIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKP 412
Query: 418 FKKMEEHYAKDKKISSCY 435
K+ME +Y DKKI S Y
Sbjct: 413 LKRMESYYKLDKKIISFY 430
>pdb|4AXE|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp
Length = 456
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/438 (58%), Positives = 330/438 (75%), Gaps = 11/438 (2%)
Query: 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNG 60
M+++L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 6 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV-- 63
Query: 61 GSVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLES 120
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE
Sbjct: 64 -SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLEC 122
Query: 121 VQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPIS 180
V K VT QRP WRV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP S
Sbjct: 123 VDKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTS 182
Query: 181 RFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240
RFI +EN +K SV+RF++HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQ
Sbjct: 183 RFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 242
Query: 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQ 300
NN RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+
Sbjct: 243 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYG 302
Query: 301 AGILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESL 360
+G+LDRLLE+QKLD DIEGAIH YY+II+QPC +C+E +A SLH++P++ESL
Sbjct: 303 SGVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAE---LSLHALPLDESL 359
Query: 361 KIVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKP 417
KIVK+YLIAATAKDCS+MI F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 360 KIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKP 417
Query: 418 FKKMEEHYAKDKKISSCY 435
K+ME +Y DKKI S Y
Sbjct: 418 LKRMESYYKLDKKIISFY 435
>pdb|4AXD|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Amppnp
Length = 456
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/438 (58%), Positives = 329/438 (75%), Gaps = 11/438 (2%)
Query: 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNG 60
M+++L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 6 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV-- 63
Query: 61 GSVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLES 120
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE
Sbjct: 64 -SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLEC 122
Query: 121 VQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPIS 180
V K VT QRP RV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP S
Sbjct: 123 VDKKVTKQRPLARVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTS 182
Query: 181 RFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240
RFI +EN +K SV+RF++HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQ
Sbjct: 183 RFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 242
Query: 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQ 300
NN RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+
Sbjct: 243 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYG 302
Query: 301 AGILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESL 360
+G+LDRLLE+QKLD DIEGAIH YY+II+QPC +CRE +A SLH++P++ESL
Sbjct: 303 SGVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICREGRPLEAE---LSLHALPLDESL 359
Query: 361 KIVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKP 417
KIVK+YLIAATAKDCS+MI F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 360 KIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKP 417
Query: 418 FKKMEEHYAKDKKISSCY 435
K+ME +Y DKKI S Y
Sbjct: 418 LKRMESYYKLDKKIISFY 435
>pdb|4AXC|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Apo Form
Length = 456
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/438 (58%), Positives = 329/438 (75%), Gaps = 11/438 (2%)
Query: 1 MDVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNG 60
M+++L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 6 MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV-- 63
Query: 61 GSVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLES 120
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE
Sbjct: 64 -SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLEC 122
Query: 121 VQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPIS 180
V K VT QRP RV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP S
Sbjct: 123 VDKKVTKQRPLARVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTS 182
Query: 181 RFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQ 240
RFI +EN +K SV+RF++HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQ
Sbjct: 183 RFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQ 242
Query: 241 NNLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQ 300
NN RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+
Sbjct: 243 NNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYG 302
Query: 301 AGILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESL 360
+G+LDRLLE+QKLD DIEGAIH YY+II+QPC +C+E +A SLH++P++ESL
Sbjct: 303 SGVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAE---LSLHALPLDESL 359
Query: 361 KIVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKP 417
KIVK+YLIAATAKDCS+MI F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 360 KIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKP 417
Query: 418 FKKMEEHYAKDKKISSCY 435
K+ME +Y DKKI S Y
Sbjct: 418 LKRMESYYKLDKKIISFY 435
>pdb|3UDZ|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|3UDZ|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6
Length = 493
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/443 (57%), Positives = 328/443 (74%), Gaps = 11/443 (2%)
Query: 2 DVVLDQNDAADWIYRGEGAANLVLAYAGSSPAFVGKVLRIPKAWRNGKPEESLAQCVNGG 61
+ +L++ DA+DWIYRGEG ANLVLAYAGSSP FVGKV+RI KA RN K ++ V
Sbjct: 36 EXILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNSNGVV--- 92
Query: 62 SVFGKHEQLLWGDNQELLSSSSKETMEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESV 121
SV EQ LW +N EL+SS +KE +EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V
Sbjct: 93 SVLTSDEQHLWRENNELISSPNKEVLEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECV 152
Query: 122 QKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISR 181
K VT QRP WRV+AA++ DS L+++DH+LF QGI C++VEIKPKCGFLP SR
Sbjct: 153 DKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSR 212
Query: 182 FIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQN 241
FI +EN +K SV+RF+ HQ LKL EISE SEYDPLDLFSGSKER+ +AIKALY+ PQN
Sbjct: 213 FIGKENILKTSVSRFKXHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQN 272
Query: 242 NLRVFLNGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQA 301
N RVFLNGSLI G G S +G AFEDALK I++++G RT+ F+QLV++ V+ +
Sbjct: 273 NFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGS 332
Query: 302 GILDRLLEVQKLDNFDIEGAIHAYYNIISQPCRVCRELDEEKASHLCTSLHSIPMNESLK 361
G+LDRLLE+QKLD DIEGAIH YY+II+QPC +C+E +A SLH++P++ESLK
Sbjct: 333 GVLDRLLEIQKLDKLDIEGAIHCYYDIINQPCPICKEGRPLEAE---LSLHALPLDESLK 389
Query: 362 IVKDYLIAATAKDCSLMICFRPKS---NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPF 418
IVK+YLIAATAKDCS+ I F+ ++ +E SG Y + L+ TNQ FDYK +F+DL LKP
Sbjct: 390 IVKEYLIAATAKDCSIXISFQSRNAWDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPL 447
Query: 419 KKMEEHYAKDKKISSCYIQMLKS 441
K+ E +Y DKKI S Y + K+
Sbjct: 448 KRXESYYKLDKKIISFYNRKQKA 470
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 208 EISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLG---GGMCGNS 264
E++ ++ +DL +G + I AL+ NP+ N++ F+ S + S G +
Sbjct: 180 EVNANAKSFNVDLLAGKSKDI-----ALHLNPRLNIKAFVRNSFLQESWGEEERNITSFP 234
Query: 265 VAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIH 323
+ G FE + C ++ ++ VH R E+ +D +I G IH
Sbjct: 235 FSPGMYFEMIIYCDVRE---------FKVAVNGVHSLEYKHRFKELSSIDTLEINGDIH 284
>pdb|2YRO|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Protein From Human Galectin-8
Length = 155
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 208 EISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLG---GGMCGNS 264
E++ ++ +DL +G + I AL+ NP+ N++ F+ S + S G +
Sbjct: 38 EVNANAKSFNVDLLAGKSKDI-----ALHLNPRLNIKAFVRNSFLQESWGEEERNITSFP 92
Query: 265 VAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIH 323
+ G FE + C ++ ++ VH R E+ +D +I G IH
Sbjct: 93 FSPGMYFEMIIYCDVRE---------FKVAVNGVHSLEYKHRFKELSSIDTLEINGDIH 142
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 148 LMSDHTLF-PQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 206
++ +HTL +G+L L V+ P G P +F+ E ++ + +++Q
Sbjct: 23 VLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA 82
Query: 207 ---------QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNL 243
Q +SER Y DL++G+ R A++ + +P + L
Sbjct: 83 FEALYQRVVQYLSERDLYV-QDLYAGADRRYRLAVRVVTESPWHAL 127
>pdb|3OJB|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
Length = 139
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 208 EISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLG---GGMCGNS 264
E++ ++ +DL +G + I AL+ NP+ N++ F+ S + S G +
Sbjct: 30 EVNANAKSFNVDLLAGKSKDI-----ALHLNPRLNIKAFVRNSFLQESWGEEERNITSFP 84
Query: 265 VAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIH 323
+ G FE + C ++ ++ VH R E+ +D +I G IH
Sbjct: 85 FSPGMYFEMIIYCDVRE---------FKVAVNGVHSLEYKHRFKELSSIDTLEINGDIH 134
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 18 EGAANLVLAYAGS-SPAFVGKVLRIPKAWRNGKPEESLAQCVNGGSVFGKHEQ----LLW 72
EG N V + A + S + R W EE +CV SV H Q ++W
Sbjct: 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV---SVLNSHTQDVKHVVW 158
Query: 73 GDNQELLSSSSKETMEQMYVEK----------------IMSPLLGPKYIDAGMC-----V 111
+QELL+S+S + ++Y E+ + S P C V
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Query: 112 RVTREFLESVQKNV--TGQRPAWR 133
R+ R++L ++ V +G P+W+
Sbjct: 219 RIWRQYLPGNEQGVACSGSDPSWK 242
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 200 QALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNN 242
QALK +++ER+E LD G E I + I+ L +NN
Sbjct: 3 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNN 45
>pdb|1YBF|A Chain A, Crystal Structure Of Amp Nucleosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|1YBF|B Chain B, Crystal Structure Of Amp Nucleosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|1YBF|C Chain C, Crystal Structure Of Amp Nucleosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 268
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 140 KIPCDSVLLMSDHTLFPQGILGEE 163
KIP ++LL+SD FP+G+ EE
Sbjct: 199 KIPXGALLLISDRPXFPEGVKTEE 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,805,918
Number of Sequences: 62578
Number of extensions: 524154
Number of successful extensions: 1389
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 17
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)