Query 013486
Match_columns 442
No_of_seqs 139 out of 225
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 11:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013486.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013486hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ktea_ c.47.1.1 (A:) Glutared 31.0 51 0.0037 24.2 6.3 59 191-252 19-79 (105)
2 d1wika_ c.47.1.1 (A:) Thioredo 16.3 65 0.0048 23.9 4.1 52 192-252 28-81 (109)
3 d2ghfa2 g.37.1.1 (A:9-44) Zinc 10.6 24 0.0017 21.1 -0.2 9 212-220 12-20 (36)
4 d1ikpa1 b.29.1.7 (A:2-251) Exo 10.5 1.3E+02 0.0091 24.9 4.3 53 365-425 138-190 (250)
5 d1wjpa2 g.37.1.1 (A:43-66) Zin 8.5 55 0.004 17.9 0.8 12 214-225 4-15 (26)
6 d1jm7a_ g.44.1.1 (A:) brca1 RI 7.0 1.1E+02 0.0079 22.0 2.3 26 189-219 39-64 (103)
7 d2atza1 d.264.1.3 (A:3-178) Hy 6.9 70 0.0051 25.8 1.1 13 21-33 70-82 (176)
8 d2pu9a1 g.36.1.1 (A:8-115) Fer 6.6 88 0.0064 23.6 1.5 19 212-230 44-62 (108)
9 d2baya1 g.44.1.2 (A:1-56) Pre- 6.0 97 0.007 19.8 1.3 15 191-205 21-35 (56)
10 d2o35a1 a.293.1.1 (A:2-80) Hyp 5.9 1E+02 0.0075 21.8 1.4 15 191-205 38-52 (79)
No 1
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=30.96 E-value=51 Score=24.17 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=34.0
Q ss_pred cCCchHH--HHHHhhhcccccCCCCCCCccCCCCCCHHHHHHHHHHHHcCCCccceeeeCCcee
Q 013486 191 RSVTRFQ--LHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 252 (442)
Q Consensus 191 ~~~CR~c--~~q~~K~~~~~~~~~s~yCPldLfsg~~~r~~~al~~L~~~PqNNlrif~~g~~i 252 (442)
...|.|| +-+.++...-+. ..-.|--+|.. .|...++.++..+-..+ .-..||+||..|
T Consensus 19 k~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~-~d~~~~~~~l~~~~g~~-tvPqIfi~g~~I 79 (105)
T d1ktea_ 19 KPTCPFCRKTQELLSQLPFKE-GLLEFVDITAT-SDTNEIQDYLQQLTGAR-TVPRVFIGKECI 79 (105)
T ss_dssp CSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGS-TTHHHHHHHHHHHHSCC-CSCEEEETTEEE
T ss_pred CCCCchHHHHHHHHHHhCCcc-ceeeeeecccc-cccHHHHHHHhhccCCC-cCcEEEECCEEE
Confidence 4469999 555665432110 01123344443 34566777777775542 246799999988
No 2
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.32 E-value=65 Score=23.90 Aligned_cols=52 Identities=19% Similarity=0.507 Sum_probs=33.6
Q ss_pred CCchHH--HHHHhhhcccccCCCCCCCccCCCCCCHHHHHHHHHHHHcCCCccceeeeCCcee
Q 013486 192 SVTRFQ--LHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 252 (442)
Q Consensus 192 ~~CR~c--~~q~~K~~~~~~~~~s~yCPldLfsg~~~r~~~al~~L~~~PqNNlrif~~g~~i 252 (442)
.+|.|| +-+.++.. .+ .|--.|+. +...++.++...-..+. -..||++|..|
T Consensus 28 p~Cp~c~~ak~lL~~~--~i----~~~~~~v~--~~~~~~~~l~~~t~~~T-vPqIFi~g~~I 81 (109)
T d1wika_ 28 AKCGFSKQILEILNST--GV----EYETFDIL--EDEEVRQGLKTFSNWPT-YPQLYVRGDLV 81 (109)
T ss_dssp CCSSTHHHHHHHHHHT--CS----CEEEEESS--SCHHHHHHHHHHHSCCS-SCEEECSSSEE
T ss_pred CCChHHHHHHHHHHhc--CC----CceEEEec--ccHHHHHHHHHhcCCCC-CCeEEECCEEE
Confidence 459998 45666543 22 45555664 33557778887766542 36899999988
No 3
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.64 E-value=24 Score=21.12 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=6.6
Q ss_pred CCCCCccCC
Q 013486 212 RSEYDPLDL 220 (442)
Q Consensus 212 ~s~yCPldL 220 (442)
+.+|||..-
T Consensus 12 ECKYC~f~T 20 (36)
T d2ghfa2 12 ECKYCTFQT 20 (36)
T ss_dssp ECSSCSCEE
T ss_pred eeeecCccc
Confidence 678999653
No 4
>d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.46 E-value=1.3e+02 Score=24.90 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHhhhCceeEEEEeecCCCCCCCCCCceeeccCCceeEEEEEEEeCCCCCCCChHHHH
Q 013486 365 DYLIAATAKDCSLMICFRPKSNEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHY 425 (442)
Q Consensus 365 ~yllaaTaKDCSimIs~~~~~~~~~~~~~~~~~~~~~~~f~~~v~VVDLD~K~~~Kl~~w~ 425 (442)
+-+|+.|++|.|.+++-......- ..+.+.. --+++..---.+...+++.||.
T Consensus 138 ~~~L~K~~~~~tF~V~~~E~Nemq----ptlAIS~----~~VS~~~AQ~~~~R~KRWs~W~ 190 (250)
T d1ikpa1 138 DELLAKLARDATFFVRAHESNEMQ----PTLAISH----AGVSVVMAQAQPRREKRWSEWA 190 (250)
T ss_dssp HHHHHHHTTEEEEEEEECSCCCSS----CEEEEEE----EEEEEEECC------CCCHHHH
T ss_pred hHHHHHhcCCceEEEEcccccccC----ceeEeec----Ccceeehhhhccchhhhhhhhh
Confidence 445679999999999876542221 1122211 1134455555667788999997
No 5
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.49 E-value=55 Score=17.91 Aligned_cols=12 Identities=33% Similarity=0.442 Sum_probs=9.9
Q ss_pred CCCccCCCCCCH
Q 013486 214 EYDPLDLFSGSK 225 (442)
Q Consensus 214 ~yCPldLfsg~~ 225 (442)
-||-|.+||.+.
T Consensus 4 pycslrf~sp~l 15 (26)
T d1wjpa2 4 PYCSLRFFSPEL 15 (26)
T ss_dssp TTTCCCBSSHHH
T ss_pred CcceeeeCCHHH
Confidence 599999998754
No 6
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.03 E-value=1.1e+02 Score=22.04 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=18.3
Q ss_pred cccCCchHHHHHHhhhcccccCCCCCCCccC
Q 013486 189 IKRSVTRFQLHQALKLSEQEISERSEYDPLD 219 (442)
Q Consensus 189 ~k~~~CR~c~~q~~K~~~~~~~~~s~yCPld 219 (442)
....+|+-|+.+.++..++. .-||.-
T Consensus 39 CgH~fC~~Ci~~~~~~~~~~-----~~CP~C 64 (103)
T d1jm7a_ 39 CDHIFCKFCMLKLLNQKKGP-----SQCPLC 64 (103)
T ss_dssp TSCCCCSHHHHHHHHSSSSS-----CCCTTT
T ss_pred CCCchhhHHHHHHHHHCCCC-----CcCcCC
Confidence 34678999999998865332 358864
No 7
>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184 {Helicobacter pylori [TaxId: 210]}
Probab=6.89 E-value=70 Score=25.78 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=11.0
Q ss_pred ceEEEEecCCCCC
Q 013486 21 ANLVLAYAGSSPA 33 (442)
Q Consensus 21 ANiV~~y~g~~~~ 33 (442)
-||||.|.|.+|+
T Consensus 70 enIVfDYnG~~~e 82 (176)
T d2atza1 70 ENIVFDYNGRNPE 82 (176)
T ss_dssp SCEEEEECSSCHH
T ss_pred eEEEEEcCCCCHH
Confidence 4999999998763
No 8
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=6.56 E-value=88 Score=23.61 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCCCCccCCCCCCHHHHHH
Q 013486 212 RSEYDPLDLFSGSKERICK 230 (442)
Q Consensus 212 ~s~yCPldLfsg~~~r~~~ 230 (442)
...|||..+++|+.+.+..
T Consensus 44 G~~~CPCr~~~gk~ee~k~ 62 (108)
T d2pu9a1 44 GSPLCPCRHYEDKEAEVKN 62 (108)
T ss_dssp SSCBCTTBCCSCHHHHHHH
T ss_pred CCCCCCcccCCCcHHHhhc
Confidence 3379999999998776544
No 9
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.97 E-value=97 Score=19.82 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=12.9
Q ss_pred cCCchHHHHHHhhhc
Q 013486 191 RSVTRFQLHQALKLS 205 (442)
Q Consensus 191 ~~~CR~c~~q~~K~~ 205 (442)
..+||-|+.++++..
T Consensus 21 h~fc~~cI~~~l~~~ 35 (56)
T d2baya1 21 TIFEKSLLEQYVKDT 35 (56)
T ss_dssp EEEEHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhhc
Confidence 567999999999964
No 10
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=5.87 E-value=1e+02 Score=21.77 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=12.2
Q ss_pred cCCchHHHHHHhhhc
Q 013486 191 RSVTRFQLHQALKLS 205 (442)
Q Consensus 191 ~~~CR~c~~q~~K~~ 205 (442)
+..||+|+-..++..
T Consensus 38 aGFCRNCLskWy~~~ 52 (79)
T d2o35a1 38 AGFCRNCLSNWYREA 52 (79)
T ss_dssp HSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456999999998854
Done!