BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013489
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
+ F+ NI +AT E L+ FS+VG V S R+++D+ TGK +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK 50
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
C F+ +N T ++LR +F G V+ ++I+ D TG+SR
Sbjct: 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 45
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
D+ + ++ N++ +T +DL FS G ++ I IL DKF+G +
Sbjct: 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPK 78
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 30/266 (11%)
Query: 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVXXXX 100
RV YE+ + D+W + QYL+++ K+ A K G++
Sbjct: 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---------LAEK-----GDMNNAKLF 301
Query: 101 XXXXXXXXXXXISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158
IST+ +K++L A++ +EE + ++ + R+L +++ L Y
Sbjct: 302 SDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYI 360
Query: 159 LIRETFQRASDYLSEQM----KNTDGLLR--LYAYWAHLEQSMGKDMVSARGVWERLLKI 212
+ +RA S +M D R +Y A +E KD A ++E LK
Sbjct: 361 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420
Query: 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGSEDICHAWLRFEREYGTLE 271
G + E +YI L+ N R +++R S S +I +L FE G L
Sbjct: 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480
Query: 272 DFDHSVQKVTPRLEELRLFRSQQESK 297
S+ KV R FR + E K
Sbjct: 481 ----SILKVEKR--RFTAFREEYEGK 500
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVV 435
T ++SN+ T DL R FS G V + I+ DK T KS+ V
Sbjct: 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGV 60
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 383 GRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
G+ K ++ F+ +++ + T ED++ F+ G +S R++ D TGKS+
Sbjct: 7 GQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSK 57
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
D + ++ N++ AT E+L F G V+ + IL DKF+G +
Sbjct: 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPK 48
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 383 GRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
G+ K ++ F+ +++ + T ED++ F+ G +S R++ D TGKS+
Sbjct: 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK 57
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
D + ++ N++ AT E+L F G V+ + IL DKF+G +
Sbjct: 4 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPK 47
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 376 PIKDAVPGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
P+++ V + D T F + + DL FFS VG V +RI+ D+ + +S+
Sbjct: 10 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 67
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 199 MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED-IC 257
MV+A G +RL ++ A+LE + SY + E D + +A+S Y + G E I
Sbjct: 580 MVNANGYTQRLPQLFQALLEGYFSYTATE---DQLEQAKSWYNQMMDSAEKGKAFEQAIM 636
Query: 258 HAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPE 301
A + + Y + ++ + +T L+E+ +R +S + PE
Sbjct: 637 PAQMLSQVPYFSRDERRKILPSIT--LKEVLAYRDALKSGARPE 678
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 382 PGRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRV 434
PG K +T C F+ N+ T ED +R F G S + I D+ G R+
Sbjct: 14 PGE-KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRL 65
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
T F++ +N T LRR F G + I +++ K +GK R
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR 144
>pdb|2DO0|A Chain A, Solution Structure Of The Rna Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein M
Length = 114
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
T F++N++ K ++ L+ FS G V IL DK GKSR
Sbjct: 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSR 56
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
T F++ +N T LRR F G + I +++ K +GK R
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR 144
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
T F+ I+++ ++R FF+ G V ++I+ D+ TG S+
Sbjct: 12 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSK 51
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
T F+ I+++ ++R FF+ G V ++I+ D+ TG S+
Sbjct: 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSK 50
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
T ++LR FS +G V S +++ DK G S
Sbjct: 17 TQDELRSLFSSIGEVESAKLIRDKVAGHS 45
>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGV 418
F T LSNI + EDL+ FS GGV
Sbjct: 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
T F+ I+++ ++R FF+ G V ++I+ D+ TG S+
Sbjct: 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSK 50
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
T E+ R F +G + S +++ DK TG+S
Sbjct: 15 TQEEFRSLFGSIGEIESCKLVRDKITGQS 43
>pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGV 418
F T LSNI + EDL+ FS GGV
Sbjct: 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 147
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
T ++LR FS +G V S +++ DK G S
Sbjct: 32 TQDELRSLFSSIGEVESAKLIRDKVAGHS 60
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
C + ++L T DLR FS G ++ + I++D+ + +SR
Sbjct: 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 88
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
D T ++N++ DL+ F G +S I + DK TG+S+
Sbjct: 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK 57
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 28.5 bits (62), Expect = 7.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
C + ++L T DLR FS G ++ + I++D+ + +SR
Sbjct: 13 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 54
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
C + ++L T DLR FS G ++ + I++D+ + +SR
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 57
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSR 433
C + ++L T DLR FS G ++ + I++D+ + +SR
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 57
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 104/279 (37%), Gaps = 56/279 (20%)
Query: 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-------------GNVVRDVYSRATKN 87
RV YE+ + D+W + QYL+++ K+ + ++Y RA
Sbjct: 34 RVXFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDXNNAKLFSDEAANIYERA--- 90
Query: 88 CPWVGELWVXXXXXXXXXXXXXXXISTVFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRI 145
IST+ +K+ L A++ +EE + ++ + R+
Sbjct: 91 ------------------------ISTLLKKNXLLYFAYADYEESRXKY-EKVHSIYNRL 125
Query: 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQM----KNTDGLLR--LYAYWAHLEQSMGKDM 199
L +++ L Y + +RA S + D R +Y A E KD
Sbjct: 126 LAIEDIDPTLVYIQYXKFARRAEGIKSGRXIFKKAREDARTRHHVYVTAALXEYYCSKDK 185
Query: 200 VSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY-SKRFTGTGSEDICH 258
A ++E LK G + E +YI L+ N R +++R S S +I
Sbjct: 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245
Query: 259 AWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESK 297
+L FE G L S+ KV R FR + E K
Sbjct: 246 RFLAFESNIGDLA----SILKVEKR--RFTAFREEYEGK 278
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
T ++LR FS +G V S +++ DK G S
Sbjct: 15 TQDELRSLFSSIGEVESAKLIRDKVAGHS 43
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 404 TYEDLRRFFSDVGGVSSIRILHDKFTGKS 432
T ++LR FS +G V S +++ DK G S
Sbjct: 15 TQDELRSLFSSIGEVESAKLIRDKVAGHS 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,588,783
Number of Sequences: 62578
Number of extensions: 505486
Number of successful extensions: 1221
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 58
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)