Query 013489
Match_columns 442
No_of_seqs 354 out of 2602
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0128 RNA-binding protein SA 100.0 3E-40 6.6E-45 324.0 19.9 417 5-441 298-717 (881)
2 KOG1915 Cell cycle control pro 100.0 1.8E-31 3.9E-36 247.5 25.9 243 3-278 57-304 (677)
3 KOG1915 Cell cycle control pro 100.0 4.1E-28 8.8E-33 225.3 27.2 215 2-246 305-536 (677)
4 KOG1070 rRNA processing protei 99.9 1.2E-22 2.7E-27 209.0 27.1 249 5-280 1444-1697(1710)
5 KOG0495 HAT repeat protein [RN 99.9 1.5E-21 3.2E-26 188.1 26.8 244 4-279 535-778 (913)
6 KOG1914 mRNA cleavage and poly 99.9 2.6E-21 5.6E-26 183.1 27.1 278 2-285 36-503 (656)
7 KOG2047 mRNA splicing factor [ 99.9 9.9E-21 2.1E-25 182.2 26.1 235 22-277 476-717 (835)
8 KOG1258 mRNA processing protei 99.9 1.3E-19 2.9E-24 175.0 26.4 274 3-284 63-396 (577)
9 KOG2047 mRNA splicing factor [ 99.8 4.1E-18 8.8E-23 164.4 25.7 256 6-267 14-298 (835)
10 KOG0495 HAT repeat protein [RN 99.8 5.8E-17 1.3E-21 156.7 26.6 211 7-246 572-782 (913)
11 KOG1070 rRNA processing protei 99.8 1.5E-17 3.2E-22 172.1 22.4 212 43-282 1444-1662(1710)
12 PF05843 Suf: Suppressor of fo 99.7 8.9E-17 1.9E-21 149.7 14.0 102 181-283 34-136 (280)
13 KOG2396 HAT (Half-A-TPR) repea 99.7 1.2E-14 2.6E-19 137.3 26.3 136 2-142 34-192 (568)
14 COG5107 RNA14 Pre-mRNA 3'-end 99.7 6.1E-14 1.3E-18 130.8 23.9 267 2-274 59-522 (660)
15 KOG1258 mRNA processing protei 99.6 3.3E-13 7.1E-18 131.1 25.2 258 3-277 273-538 (577)
16 KOG2396 HAT (Half-A-TPR) repea 99.6 1.7E-13 3.7E-18 129.6 22.1 92 6-101 92-183 (568)
17 PF05843 Suf: Suppressor of fo 99.5 1.9E-13 4.1E-18 127.4 14.9 96 25-121 3-98 (280)
18 KOG1914 mRNA cleavage and poly 99.5 6.5E-12 1.4E-16 119.9 24.6 244 9-269 10-294 (656)
19 KOG4626 O-linked N-acetylgluco 99.4 8.7E-11 1.9E-15 114.0 20.2 247 2-257 235-494 (966)
20 TIGR00990 3a0801s09 mitochondr 99.3 1.3E-09 2.9E-14 113.6 27.2 239 3-245 312-570 (615)
21 KOG0128 RNA-binding protein SA 99.3 5.9E-10 1.3E-14 111.7 23.0 215 6-244 333-561 (881)
22 KOG0149 Predicted RNA-binding 99.3 4E-12 8.7E-17 108.8 6.5 55 387-441 8-62 (247)
23 TIGR00990 3a0801s09 mitochondr 99.3 5.6E-09 1.2E-13 108.9 30.7 93 35-129 306-401 (615)
24 PLN03134 glycine-rich RNA-bind 99.3 1.7E-11 3.6E-16 101.8 8.8 54 388-441 31-84 (144)
25 KOG4626 O-linked N-acetylgluco 99.3 5.5E-10 1.2E-14 108.5 19.0 218 3-227 270-500 (966)
26 TIGR02917 PEP_TPR_lipo putativ 99.2 6.6E-09 1.4E-13 112.8 30.0 104 165-272 584-687 (899)
27 PRK15174 Vi polysaccharide exp 99.2 1.2E-08 2.7E-13 106.6 29.2 78 167-245 269-346 (656)
28 PRK11447 cellulose synthase su 99.2 1.8E-08 4E-13 112.2 30.6 263 3-280 369-697 (1157)
29 TIGR02917 PEP_TPR_lipo putativ 99.2 2.7E-08 5.8E-13 108.1 30.2 259 3-272 483-754 (899)
30 COG5107 RNA14 Pre-mRNA 3'-end 99.2 2.2E-08 4.8E-13 94.2 24.6 266 8-285 31-364 (660)
31 PRK15174 Vi polysaccharide exp 99.2 4.8E-08 1E-12 102.2 29.7 215 3-245 94-312 (656)
32 KOG0126 Predicted RNA-binding 99.1 1.7E-11 3.6E-16 100.5 2.0 55 387-441 31-85 (219)
33 KOG0113 U1 small nuclear ribon 99.1 1.3E-10 2.9E-15 102.7 6.7 53 389-441 99-151 (335)
34 PRK11788 tetratricopeptide rep 99.1 2.2E-07 4.9E-12 91.3 30.3 109 165-278 197-306 (389)
35 COG3063 PilF Tfp pilus assembl 99.1 3E-08 6.4E-13 85.9 20.3 181 34-273 46-226 (250)
36 KOG0121 Nuclear cap-binding pr 99.1 1.2E-10 2.6E-15 89.9 4.6 53 389-441 34-86 (153)
37 PF13429 TPR_15: Tetratricopep 99.1 1.4E-09 3.1E-14 101.9 12.7 248 4-280 27-274 (280)
38 KOG0122 Translation initiation 99.1 4.6E-10 1E-14 96.6 8.2 55 387-441 185-239 (270)
39 PRK11189 lipoprotein NlpI; Pro 99.1 2.1E-07 4.6E-12 87.8 26.9 212 6-246 47-265 (296)
40 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 5.2E-10 1.1E-14 108.6 9.3 53 389-441 267-319 (352)
41 PF08424 NRDE-2: NRDE-2, neces 99.0 1.9E-08 4.1E-13 95.7 18.7 114 3-121 3-130 (321)
42 PRK11447 cellulose synthase su 99.0 2.1E-07 4.5E-12 103.9 29.9 239 4-273 288-548 (1157)
43 TIGR02521 type_IV_pilW type IV 99.0 1.7E-07 3.7E-12 84.3 24.0 98 23-122 31-128 (234)
44 TIGR01659 sex-lethal sex-letha 99.0 5.8E-10 1.3E-14 106.2 8.0 55 387-441 103-157 (346)
45 PRK12370 invasion protein regu 99.0 1.5E-07 3.2E-12 96.8 25.4 213 3-245 279-501 (553)
46 PF13429 TPR_15: Tetratricopep 99.0 3.6E-09 7.8E-14 99.2 11.8 226 25-279 10-239 (280)
47 PRK11788 tetratricopeptide rep 99.0 4.3E-07 9.3E-12 89.3 27.2 236 3-246 53-311 (389)
48 PF00076 RRM_1: RNA recognitio 99.0 7.9E-10 1.7E-14 80.1 5.1 47 394-441 1-47 (70)
49 PRK09782 bacteriophage N4 rece 99.0 4.5E-07 9.8E-12 97.8 28.2 218 22-245 476-705 (987)
50 PRK10049 pgaA outer membrane p 98.9 2E-06 4.4E-11 91.9 32.0 96 3-104 67-162 (765)
51 KOG0127 Nucleolar protein fibr 98.9 2.1E-09 4.6E-14 102.5 7.9 57 385-441 286-342 (678)
52 TIGR01645 half-pint poly-U bin 98.9 1.9E-09 4E-14 108.4 7.1 52 390-441 106-157 (612)
53 PF14259 RRM_6: RNA recognitio 98.9 2.9E-09 6.4E-14 77.1 5.8 47 394-441 1-47 (70)
54 PRK09782 bacteriophage N4 rece 98.9 3.7E-07 8E-12 98.4 24.1 197 25-246 544-740 (987)
55 PRK11189 lipoprotein NlpI; Pro 98.9 5E-07 1.1E-11 85.2 22.4 201 3-231 82-285 (296)
56 KOG0117 Heterogeneous nuclear 98.9 5.3E-09 1.2E-13 97.6 7.1 53 389-441 81-133 (506)
57 TIGR01648 hnRNP-R-Q heterogene 98.9 5.8E-09 1.3E-13 104.7 8.0 51 390-441 57-107 (578)
58 COG3063 PilF Tfp pilus assembl 98.8 5.6E-07 1.2E-11 78.1 18.9 117 3-125 53-171 (250)
59 PRK12370 invasion protein regu 98.8 2.4E-06 5.2E-11 87.9 26.1 203 20-245 253-469 (553)
60 TIGR01645 half-pint poly-U bin 98.8 7.8E-09 1.7E-13 104.0 7.6 52 390-441 203-254 (612)
61 TIGR01659 sex-lethal sex-letha 98.8 7.6E-09 1.6E-13 98.6 6.8 51 391-441 193-243 (346)
62 KOG0125 Ataxin 2-binding prote 98.8 1.2E-08 2.6E-13 91.7 7.3 51 389-441 94-144 (376)
63 TIGR01622 SF-CC1 splicing fact 98.8 1.2E-08 2.5E-13 102.7 7.6 55 387-441 85-139 (457)
64 KOG0131 Splicing factor 3b, su 98.8 8.6E-09 1.9E-13 85.0 4.6 53 389-441 7-59 (203)
65 PRK10049 pgaA outer membrane p 98.7 3.2E-05 6.9E-10 82.8 32.4 232 4-246 34-301 (765)
66 KOG0148 Apoptosis-promoting RN 98.7 1.6E-08 3.5E-13 88.4 5.6 51 391-441 62-112 (321)
67 COG5191 Uncharacterized conser 98.7 4.5E-08 9.8E-13 88.0 8.5 135 2-141 34-193 (435)
68 KOG0547 Translocase of outer m 98.7 3.4E-06 7.3E-11 80.7 21.1 218 35-279 338-562 (606)
69 KOG0111 Cyclophilin-type pepti 98.7 8.2E-09 1.8E-13 87.4 3.2 54 389-442 8-61 (298)
70 KOG0144 RNA-binding protein CU 98.7 2.5E-08 5.4E-13 92.8 6.4 54 388-441 31-84 (510)
71 KOG0547 Translocase of outer m 98.7 2.9E-06 6.3E-11 81.1 20.2 221 3-245 344-565 (606)
72 KOG1125 TPR repeat-containing 98.7 2.1E-06 4.6E-11 83.6 19.3 237 34-278 296-566 (579)
73 PF08424 NRDE-2: NRDE-2, neces 98.7 4.5E-06 9.7E-11 79.5 21.2 168 44-247 6-184 (321)
74 KOG4207 Predicted splicing fac 98.7 3E-08 6.4E-13 83.4 5.4 53 389-441 11-63 (256)
75 TIGR02521 type_IV_pilW type IV 98.7 2E-05 4.4E-10 70.6 24.4 196 57-277 31-226 (234)
76 TIGR01642 U2AF_lg U2 snRNP aux 98.7 4.6E-08 1E-12 99.8 7.8 52 390-441 294-345 (509)
77 KOG0108 mRNA cleavage and poly 98.6 2.9E-08 6.2E-13 96.0 5.2 50 392-441 19-68 (435)
78 KOG0124 Polypyrimidine tract-b 98.6 2.1E-08 4.5E-13 91.2 3.2 51 391-441 113-163 (544)
79 KOG2076 RNA polymerase III tra 98.6 0.00013 2.8E-09 74.9 30.4 253 19-278 203-507 (895)
80 KOG1155 Anaphase-promoting com 98.6 9.4E-06 2E-10 77.2 20.6 183 3-245 280-494 (559)
81 KOG1155 Anaphase-promoting com 98.6 4.3E-05 9.3E-10 72.9 24.6 243 3-282 245-494 (559)
82 smart00362 RRM_2 RNA recogniti 98.6 1.1E-07 2.4E-12 68.6 6.0 47 393-441 1-47 (72)
83 COG0724 RNA-binding proteins ( 98.6 1.1E-07 2.3E-12 88.9 7.5 51 391-441 115-165 (306)
84 TIGR01622 SF-CC1 splicing fact 98.6 1.2E-07 2.6E-12 95.4 7.8 51 391-441 186-236 (457)
85 KOG0148 Apoptosis-promoting RN 98.6 1E-07 2.3E-12 83.5 6.2 48 388-441 161-208 (321)
86 TIGR00540 hemY_coli hemY prote 98.6 0.00012 2.5E-09 72.6 28.8 246 25-279 120-395 (409)
87 KOG2076 RNA polymerase III tra 98.6 2E-05 4.3E-10 80.7 22.6 236 2-244 224-510 (895)
88 KOG1129 TPR repeat-containing 98.5 6.8E-06 1.5E-10 74.8 16.9 199 35-245 235-457 (478)
89 PRK10747 putative protoheme IX 98.5 0.00018 3.8E-09 71.0 28.3 243 26-278 121-385 (398)
90 smart00360 RRM RNA recognition 98.5 1.8E-07 4E-12 67.1 5.3 46 396-441 1-46 (71)
91 TIGR00540 hemY_coli hemY prote 98.5 3.6E-05 7.7E-10 76.3 23.2 218 3-246 136-399 (409)
92 PLN02789 farnesyltranstransfer 98.5 0.00013 2.7E-09 69.3 25.7 198 25-245 39-249 (320)
93 PLN03218 maturation of RBCL 1; 98.5 0.00021 4.5E-09 78.1 30.3 266 3-277 490-777 (1060)
94 KOG1126 DNA-binding cell divis 98.5 1.7E-05 3.6E-10 78.8 19.6 82 163-245 470-551 (638)
95 KOG0144 RNA-binding protein CU 98.5 5.5E-08 1.2E-12 90.5 2.4 52 389-441 122-173 (510)
96 PRK10747 putative protoheme IX 98.5 3.8E-05 8.2E-10 75.7 22.5 212 3-245 136-389 (398)
97 TIGR01628 PABP-1234 polyadenyl 98.5 2.2E-07 4.8E-12 95.8 6.9 50 391-441 285-334 (562)
98 PLN03218 maturation of RBCL 1; 98.5 0.00048 1E-08 75.4 31.7 268 4-279 456-744 (1060)
99 KOG0114 Predicted RNA-binding 98.4 7.3E-07 1.6E-11 66.6 6.9 49 390-441 17-65 (124)
100 PF08311 Mad3_BUB1_I: Mad3/BUB 98.4 2.9E-06 6.2E-11 68.8 10.7 110 2-120 2-126 (126)
101 KOG0130 RNA-binding protein RB 98.4 4E-07 8.7E-12 71.3 4.7 56 386-441 67-122 (170)
102 TIGR01628 PABP-1234 polyadenyl 98.4 4.3E-07 9.3E-12 93.8 6.5 50 391-441 88-137 (562)
103 KOG0145 RNA-binding protein EL 98.4 8.5E-07 1.9E-11 77.3 7.1 53 389-441 39-91 (360)
104 KOG1126 DNA-binding cell divis 98.4 5E-05 1.1E-09 75.5 20.0 197 47-270 411-607 (638)
105 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.4 6.9E-07 1.5E-11 86.7 7.2 51 391-441 89-139 (352)
106 PRK10370 formate-dependent nit 98.4 1.7E-05 3.6E-10 70.0 15.2 117 5-126 59-177 (198)
107 KOG0145 RNA-binding protein EL 98.4 8.8E-07 1.9E-11 77.2 6.7 55 387-441 274-328 (360)
108 COG5191 Uncharacterized conser 98.3 5E-07 1.1E-11 81.4 4.9 82 21-103 105-186 (435)
109 KOG0147 Transcriptional coacti 98.3 3.1E-07 6.8E-12 88.4 3.4 48 394-441 281-328 (549)
110 cd00590 RRM RRM (RNA recogniti 98.3 1.3E-06 2.9E-11 63.2 6.1 48 393-441 1-48 (74)
111 KOG1125 TPR repeat-containing 98.3 8.5E-05 1.8E-09 72.8 19.9 215 56-285 285-526 (579)
112 KOG0146 RNA-binding protein ET 98.3 6.7E-07 1.5E-11 78.2 4.9 56 386-441 280-335 (371)
113 PLN02789 farnesyltranstransfer 98.3 0.00019 4.1E-09 68.1 21.5 201 6-227 58-265 (320)
114 PRK10370 formate-dependent nit 98.3 4.5E-05 9.7E-10 67.3 15.2 82 40-122 56-139 (198)
115 PLN03081 pentatricopeptide (PP 98.2 0.00018 3.9E-09 76.4 22.1 258 4-279 243-519 (697)
116 KOG0124 Polypyrimidine tract-b 98.2 1.7E-06 3.7E-11 78.9 5.4 50 392-441 211-260 (544)
117 KOG4208 Nucleolar RNA-binding 98.2 2.5E-06 5.5E-11 72.2 5.7 52 390-441 48-100 (214)
118 KOG1173 Anaphase-promoting com 98.2 0.00053 1.1E-08 67.2 22.1 202 25-245 314-517 (611)
119 KOG3060 Uncharacterized conser 98.2 0.0014 3.1E-08 58.1 22.4 225 22-280 16-248 (289)
120 PRK15359 type III secretion sy 98.2 0.00013 2.7E-09 61.0 15.6 112 6-126 14-125 (144)
121 KOG0127 Nucleolar protein fibr 98.2 3.4E-06 7.5E-11 81.1 6.2 50 391-441 117-166 (678)
122 KOG3060 Uncharacterized conser 98.1 0.0014 3.1E-08 58.1 21.3 158 39-221 68-229 (289)
123 TIGR03302 OM_YfiO outer membra 98.1 0.00096 2.1E-08 60.6 21.6 186 20-245 30-231 (235)
124 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 7.7E-06 1.7E-10 82.5 8.3 48 389-441 273-321 (481)
125 KOG0146 RNA-binding protein ET 98.1 3.4E-06 7.4E-11 73.9 4.8 52 389-441 17-68 (371)
126 PRK14574 hmsH outer membrane p 98.1 0.012 2.6E-07 62.9 32.2 63 182-245 416-478 (822)
127 TIGR02552 LcrH_SycD type III s 98.1 0.00025 5.4E-09 58.3 15.6 114 6-125 4-117 (135)
128 KOG2002 TPR-containing nuclear 98.1 0.0008 1.7E-08 69.9 21.7 237 3-253 470-716 (1018)
129 KOG0131 Splicing factor 3b, su 98.1 3E-06 6.5E-11 70.2 3.6 50 392-441 97-147 (203)
130 KOG0415 Predicted peptidyl pro 98.0 4.4E-06 9.5E-11 76.1 4.3 50 392-441 240-289 (479)
131 KOG4205 RNA-binding protein mu 98.0 1.1E-05 2.5E-10 74.8 6.5 52 390-441 96-147 (311)
132 KOG1840 Kinesin light chain [C 98.0 0.0052 1.1E-07 61.5 25.5 241 19-278 195-471 (508)
133 KOG2002 TPR-containing nuclear 98.0 0.007 1.5E-07 63.2 26.7 235 4-244 183-440 (1018)
134 PLN03077 Protein ECB2; Provisi 98.0 0.0028 6.1E-08 69.1 24.9 110 165-280 571-683 (857)
135 PLN03081 pentatricopeptide (PP 97.9 0.0043 9.4E-08 66.0 25.6 262 3-279 207-487 (697)
136 smart00386 HAT HAT (Half-A-TPR 97.9 1.5E-05 3.2E-10 47.8 4.0 32 37-68 1-32 (33)
137 PRK15179 Vi polysaccharide bio 97.9 0.0028 6.2E-08 66.3 23.2 81 165-246 137-217 (694)
138 PF12569 NARP1: NMDA receptor- 97.9 0.01 2.3E-07 59.9 26.3 73 22-94 37-113 (517)
139 TIGR01642 U2AF_lg U2 snRNP aux 97.9 5.7E-05 1.2E-09 77.2 10.5 51 385-441 169-231 (509)
140 smart00777 Mad3_BUB1_I Mad3/BU 97.9 0.00019 4E-09 57.5 11.0 108 2-118 2-124 (125)
141 PRK14720 transcript cleavage f 97.9 0.0074 1.6E-07 64.2 25.8 233 19-278 27-282 (906)
142 KOG1174 Anaphase-promoting com 97.9 0.014 3E-07 55.5 24.6 219 22-266 231-483 (564)
143 PRK15359 type III secretion sy 97.9 0.0002 4.3E-09 59.8 11.6 93 3-100 42-134 (144)
144 KOG1173 Anaphase-promoting com 97.9 0.0063 1.4E-07 59.9 23.1 227 22-277 277-512 (611)
145 KOG4209 Splicing factor RNPS1, 97.9 1.1E-05 2.5E-10 72.0 4.0 53 389-441 99-151 (231)
146 KOG0116 RasGAP SH3 binding pro 97.9 2.9E-05 6.4E-10 74.9 6.9 55 387-441 284-338 (419)
147 PRK14574 hmsH outer membrane p 97.9 0.0026 5.7E-08 67.8 22.1 183 32-240 43-226 (822)
148 KOG0123 Polyadenylate-binding 97.9 1.7E-05 3.7E-10 76.3 5.3 46 393-441 78-123 (369)
149 PLN03077 Protein ECB2; Provisi 97.9 0.0038 8.2E-08 68.1 24.1 113 3-123 407-519 (857)
150 cd05804 StaR_like StaR_like; a 97.9 0.0022 4.8E-08 62.1 20.2 203 19-245 2-214 (355)
151 smart00361 RRM_1 RNA recogniti 97.9 2.2E-05 4.7E-10 56.6 4.4 37 405-441 2-45 (70)
152 KOG1156 N-terminal acetyltrans 97.8 0.019 4E-07 57.6 25.3 233 22-274 74-324 (700)
153 COG2956 Predicted N-acetylgluc 97.8 0.025 5.4E-07 52.2 23.9 219 37-283 49-278 (389)
154 COG2956 Predicted N-acetylgluc 97.8 0.028 6.2E-07 51.8 27.5 239 5-270 55-299 (389)
155 KOG0117 Heterogeneous nuclear 97.8 3.3E-05 7.1E-10 72.8 5.7 54 388-441 161-216 (506)
156 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.8 3.3E-05 7.2E-10 77.9 6.2 50 390-441 393-444 (481)
157 PRK15179 Vi polysaccharide bio 97.8 0.0017 3.7E-08 67.9 18.7 97 23-121 86-182 (694)
158 KOG0153 Predicted RNA-binding 97.8 3.4E-05 7.4E-10 70.4 5.4 49 387-441 224-272 (377)
159 KOG4212 RNA-binding protein hn 97.8 3.5E-05 7.6E-10 72.3 5.6 50 392-442 45-95 (608)
160 KOG0110 RNA-binding protein (R 97.7 1.5E-05 3.3E-10 79.2 2.7 51 391-441 613-663 (725)
161 KOG4661 Hsp27-ERE-TATA-binding 97.7 9.2E-05 2E-09 71.7 7.3 54 388-441 402-455 (940)
162 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00071 1.5E-08 54.8 11.5 79 159-244 44-126 (126)
163 TIGR01648 hnRNP-R-Q heterogene 97.7 6.7E-05 1.4E-09 75.9 6.6 43 391-441 233-277 (578)
164 KOG0147 Transcriptional coacti 97.7 1.3E-05 2.8E-10 77.5 1.0 59 383-441 171-229 (549)
165 TIGR02552 LcrH_SycD type III s 97.7 0.00087 1.9E-08 55.0 11.8 81 164-245 33-113 (135)
166 smart00386 HAT HAT (Half-A-TPR 97.6 9.1E-05 2E-09 44.2 4.0 31 198-228 2-32 (33)
167 PF13432 TPR_16: Tetratricopep 97.6 0.00036 7.8E-09 49.3 7.7 58 188-246 3-60 (65)
168 KOG0226 RNA-binding proteins [ 97.6 9.8E-05 2.1E-09 64.7 5.5 56 386-441 185-240 (290)
169 KOG4206 Spliceosomal protein s 97.6 0.00014 2.9E-09 63.0 5.8 47 392-441 10-60 (221)
170 cd00189 TPR Tetratricopeptide 97.6 0.0018 3.8E-08 48.3 11.6 97 25-123 2-98 (100)
171 TIGR03302 OM_YfiO outer membra 97.6 0.011 2.4E-07 53.5 18.8 175 3-215 51-235 (235)
172 PF13414 TPR_11: TPR repeat; P 97.6 0.00047 1E-08 49.3 7.6 68 22-89 2-69 (69)
173 PF02184 HAT: HAT (Half-A-TPR) 97.5 0.00012 2.5E-09 42.7 3.2 30 198-228 2-31 (32)
174 PRK14720 transcript cleavage f 97.5 0.013 2.8E-07 62.4 20.8 153 46-228 105-268 (906)
175 cd05804 StaR_like StaR_like; a 97.5 0.058 1.2E-06 52.2 24.5 208 22-246 113-336 (355)
176 KOG1129 TPR repeat-containing 97.5 0.0012 2.7E-08 60.5 11.0 204 4-219 242-465 (478)
177 PF13414 TPR_11: TPR repeat; P 97.5 0.001 2.2E-08 47.5 8.6 62 183-245 4-66 (69)
178 KOG4162 Predicted calmodulin-b 97.5 0.071 1.5E-06 54.6 23.7 94 157-253 693-788 (799)
179 KOG0123 Polyadenylate-binding 97.4 0.00018 4E-09 69.2 5.4 50 391-441 270-319 (369)
180 PLN03213 repressor of silencin 97.4 0.00019 4.1E-09 68.5 5.3 36 391-426 10-45 (759)
181 KOG2003 TPR repeat-containing 97.4 0.057 1.2E-06 51.9 21.5 79 199-281 642-723 (840)
182 PF13428 TPR_14: Tetratricopep 97.4 0.00047 1E-08 44.4 5.5 42 24-65 2-43 (44)
183 PRK10153 DNA-binding transcrip 97.4 0.018 4E-07 58.4 19.6 178 83-278 328-509 (517)
184 KOG1156 N-terminal acetyltrans 97.4 0.098 2.1E-06 52.7 23.2 215 27-244 223-466 (700)
185 PF13432 TPR_16: Tetratricopep 97.4 0.00091 2E-08 47.1 7.1 61 30-91 4-64 (65)
186 PF12569 NARP1: NMDA receptor- 97.3 0.19 4.1E-06 50.9 25.6 217 3-245 56-290 (517)
187 PF14559 TPR_19: Tetratricopep 97.3 0.00083 1.8E-08 47.8 6.4 64 35-99 3-66 (68)
188 KOG1548 Transcription elongati 97.3 0.00086 1.9E-08 61.5 7.8 50 391-441 134-191 (382)
189 PF02184 HAT: HAT (Half-A-TPR) 97.3 0.0003 6.4E-09 41.0 3.0 30 38-68 2-31 (32)
190 KOG1128 Uncharacterized conser 97.3 0.015 3.2E-07 59.1 16.7 115 162-280 499-613 (777)
191 PLN03088 SGT1, suppressor of 97.3 0.0066 1.4E-07 58.8 14.2 95 30-126 9-103 (356)
192 KOG1840 Kinesin light chain [C 97.2 0.23 5E-06 50.0 24.5 172 64-246 205-396 (508)
193 PF13428 TPR_14: Tetratricopep 97.2 0.00091 2E-08 43.1 5.0 42 183-225 2-43 (44)
194 KOG0132 RNA polymerase II C-te 97.2 0.00039 8.5E-09 70.1 4.3 44 391-440 421-464 (894)
195 KOG0109 RNA-binding protein LA 97.2 0.00038 8.3E-09 62.2 3.8 42 392-441 79-120 (346)
196 KOG4162 Predicted calmodulin-b 97.2 0.39 8.4E-06 49.5 25.3 246 23-288 323-578 (799)
197 PLN03088 SGT1, suppressor of 97.1 0.0076 1.7E-07 58.4 12.8 90 3-97 20-109 (356)
198 PF14559 TPR_19: Tetratricopep 97.1 0.0022 4.7E-08 45.6 6.8 52 194-246 3-54 (68)
199 PF04059 RRM_2: RNA recognitio 97.1 0.0016 3.4E-08 49.6 5.8 50 392-441 2-53 (97)
200 KOG4210 Nuclear localization s 97.0 0.00036 7.9E-09 64.6 2.5 54 388-441 181-235 (285)
201 KOG0533 RRM motif-containing p 97.0 0.0011 2.4E-08 59.3 5.3 52 389-441 81-132 (243)
202 COG4235 Cytochrome c biogenesi 97.0 0.033 7.1E-07 51.1 14.7 86 39-125 138-225 (287)
203 KOG1128 Uncharacterized conser 97.0 0.024 5.2E-07 57.6 15.0 77 169-246 540-616 (777)
204 COG5010 TadD Flp pilus assembl 97.0 0.07 1.5E-06 47.9 16.3 49 193-242 179-227 (257)
205 KOG3785 Uncharacterized conser 97.0 0.066 1.4E-06 50.0 16.5 171 36-218 35-220 (557)
206 PRK15363 pathogenicity island 97.0 0.056 1.2E-06 45.1 14.6 102 20-123 32-133 (157)
207 cd00189 TPR Tetratricopeptide 97.0 0.0061 1.3E-07 45.2 8.7 81 164-245 16-96 (100)
208 PRK15363 pathogenicity island 97.0 0.051 1.1E-06 45.3 14.2 91 187-281 40-130 (157)
209 KOG0151 Predicted splicing reg 96.9 0.0019 4.1E-08 64.7 6.5 54 388-441 171-227 (877)
210 COG4235 Cytochrome c biogenesi 96.9 0.032 6.9E-07 51.2 14.0 113 7-125 144-259 (287)
211 KOG0107 Alternative splicing f 96.9 0.0013 2.9E-08 54.5 4.1 37 390-426 9-45 (195)
212 KOG2003 TPR repeat-containing 96.9 0.49 1.1E-05 45.8 22.0 189 31-245 464-654 (840)
213 KOG0110 RNA-binding protein (R 96.9 0.0017 3.6E-08 65.2 5.5 48 393-441 517-568 (725)
214 PF13371 TPR_9: Tetratricopept 96.9 0.0092 2E-07 42.9 8.3 55 191-246 4-58 (73)
215 KOG4660 Protein Mei2, essentia 96.8 0.0016 3.6E-08 63.5 5.3 52 384-440 68-119 (549)
216 PF13371 TPR_9: Tetratricopept 96.8 0.0064 1.4E-07 43.8 7.3 60 34-94 6-65 (73)
217 COG4783 Putative Zn-dependent 96.8 0.15 3.2E-06 49.8 18.1 87 33-121 316-402 (484)
218 COG4783 Putative Zn-dependent 96.8 0.045 9.7E-07 53.3 14.3 101 3-108 324-424 (484)
219 PRK02603 photosystem I assembl 96.8 0.063 1.4E-06 46.1 14.2 81 22-103 34-117 (172)
220 PF13893 RRM_5: RNA recognitio 96.7 0.0023 5.1E-08 43.6 4.0 29 408-441 1-29 (56)
221 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.053 1.1E-06 42.8 12.5 99 25-125 4-108 (119)
222 smart00777 Mad3_BUB1_I Mad3/BU 96.7 0.029 6.2E-07 45.0 10.5 75 161-242 46-124 (125)
223 PRK11906 transcriptional regul 96.7 0.12 2.6E-06 50.6 16.4 174 84-271 240-425 (458)
224 KOG0553 TPR repeat-containing 96.6 0.042 9E-07 50.3 12.4 99 26-126 84-182 (304)
225 PF12895 Apc3: Anaphase-promot 96.6 0.013 2.9E-07 43.6 8.0 78 164-243 5-84 (84)
226 KOG1174 Anaphase-promoting com 96.6 0.77 1.7E-05 44.1 24.1 243 23-270 197-457 (564)
227 KOG0120 Splicing factor U2AF, 96.6 0.003 6.5E-08 62.2 4.9 54 388-441 286-339 (500)
228 PF09295 ChAPs: ChAPs (Chs5p-A 96.5 0.09 1.9E-06 51.3 14.3 104 164-277 185-288 (395)
229 KOG4849 mRNA cleavage factor I 96.4 0.0025 5.4E-08 58.4 3.1 53 388-440 77-131 (498)
230 COG5010 TadD Flp pilus assembl 96.4 0.68 1.5E-05 41.7 19.5 93 178-274 130-222 (257)
231 KOG0624 dsRNA-activated protei 96.4 0.89 1.9E-05 42.7 23.9 235 21-274 36-277 (504)
232 KOG0553 TPR repeat-containing 96.3 0.06 1.3E-06 49.3 11.4 89 162-253 95-183 (304)
233 KOG1127 TPR repeat-containing 96.2 0.92 2E-05 48.3 20.4 184 56-245 460-658 (1238)
234 KOG3617 WD40 and TPR repeat-co 96.2 2 4.4E-05 45.0 22.6 85 188-272 1027-1163(1416)
235 KOG4212 RNA-binding protein hn 96.2 0.0054 1.2E-07 58.1 4.0 52 385-441 530-581 (608)
236 TIGR02795 tol_pal_ybgF tol-pal 96.1 0.2 4.3E-06 39.4 12.5 56 189-245 9-67 (119)
237 PF13424 TPR_12: Tetratricopep 96.0 0.084 1.8E-06 38.4 9.1 63 182-245 5-74 (78)
238 PF12688 TPR_5: Tetratrico pep 95.9 0.48 1E-05 37.9 13.7 92 27-120 5-102 (120)
239 PF13525 YfiO: Outer membrane 95.9 1.1 2.3E-05 39.6 19.4 63 28-93 10-77 (203)
240 PF09295 ChAPs: ChAPs (Chs5p-A 95.9 0.17 3.6E-06 49.4 13.2 76 36-113 213-288 (395)
241 CHL00033 ycf3 photosystem I as 95.8 0.35 7.7E-06 41.2 13.6 78 22-100 34-114 (168)
242 PF12895 Apc3: Anaphase-promot 95.7 0.044 9.5E-07 40.7 6.7 81 36-119 2-84 (84)
243 PRK10153 DNA-binding transcrip 95.7 0.43 9.4E-06 48.6 15.7 172 47-244 327-512 (517)
244 KOG1127 TPR repeat-containing 95.7 2 4.3E-05 45.9 20.2 90 33-122 12-103 (1238)
245 KOG1457 RNA binding protein (c 95.7 0.047 1E-06 47.3 7.2 53 389-441 32-85 (284)
246 PF09976 TPR_21: Tetratricopep 95.6 0.68 1.5E-05 38.4 14.3 59 184-244 87-145 (145)
247 PRK10803 tol-pal system protei 95.6 0.19 4.1E-06 46.3 11.7 61 184-245 182-245 (263)
248 KOG4211 Splicing factor hnRNP- 95.5 0.045 9.7E-07 53.0 7.4 52 389-441 101-153 (510)
249 PF13431 TPR_17: Tetratricopep 95.5 0.012 2.7E-07 35.3 2.5 33 205-237 1-33 (34)
250 PF04733 Coatomer_E: Coatomer 95.5 0.55 1.2E-05 44.0 14.6 94 181-278 166-260 (290)
251 PRK02603 photosystem I assembl 95.3 0.27 5.8E-06 42.1 11.0 50 182-232 72-121 (172)
252 PRK10866 outer membrane biogen 95.3 2.3 4.9E-05 38.8 22.1 67 30-99 39-111 (243)
253 KOG0129 Predicted RNA-binding 95.2 0.042 9.1E-07 53.5 6.0 53 388-441 256-314 (520)
254 PF03704 BTAD: Bacterial trans 95.1 0.43 9.4E-06 39.5 11.6 45 74-119 78-122 (146)
255 PF14938 SNAP: Soluble NSF att 95.1 2.5 5.3E-05 39.5 17.7 121 159-281 92-223 (282)
256 PF14938 SNAP: Soluble NSF att 95.1 2.9 6.3E-05 39.0 20.5 123 155-280 129-260 (282)
257 PF09976 TPR_21: Tetratricopep 95.0 0.94 2E-05 37.5 13.3 25 29-53 54-78 (145)
258 KOG0129 Predicted RNA-binding 95.0 0.05 1.1E-06 53.0 5.9 54 388-441 367-421 (520)
259 CHL00033 ycf3 photosystem I as 94.8 0.35 7.5E-06 41.2 10.4 60 183-243 73-139 (168)
260 PRK10803 tol-pal system protei 94.8 0.55 1.2E-05 43.3 12.1 98 24-125 143-249 (263)
261 KOG3152 TBP-binding protein, a 94.8 0.037 8.1E-07 49.0 4.1 39 391-429 74-112 (278)
262 KOG4206 Spliceosomal protein s 94.8 0.087 1.9E-06 46.0 6.2 49 388-441 143-191 (221)
263 PF13512 TPR_18: Tetratricopep 94.8 0.35 7.7E-06 39.6 9.5 61 29-92 16-81 (142)
264 PRK11906 transcriptional regul 94.7 1.7 3.6E-05 42.8 15.6 172 49-243 240-433 (458)
265 KOG3824 Huntingtin interacting 94.5 3.8 8.1E-05 38.0 16.1 61 33-94 126-186 (472)
266 KOG1457 RNA binding protein (c 94.1 0.045 9.9E-07 47.4 3.0 45 393-441 212-256 (284)
267 PF13431 TPR_17: Tetratricopep 93.9 0.066 1.4E-06 32.1 2.7 26 45-70 1-26 (34)
268 KOG0550 Molecular chaperone (D 93.7 2.6 5.7E-05 40.6 14.1 97 181-284 248-348 (486)
269 PLN03098 LPA1 LOW PSII ACCUMUL 93.7 0.35 7.6E-06 47.4 8.5 67 178-245 71-140 (453)
270 PLN03098 LPA1 LOW PSII ACCUMUL 93.7 0.33 7.1E-06 47.5 8.3 68 19-87 71-141 (453)
271 KOG1995 Conserved Zn-finger pr 93.3 0.082 1.8E-06 49.3 3.5 54 388-441 63-124 (351)
272 PF12688 TPR_5: Tetratrico pep 93.3 3.5 7.6E-05 32.9 12.7 62 183-245 39-103 (120)
273 KOG0550 Molecular chaperone (D 93.3 5.9 0.00013 38.3 15.6 159 72-246 183-350 (486)
274 KOG0105 Alternative splicing f 92.9 0.24 5.2E-06 41.7 5.2 47 388-441 112-158 (241)
275 PF07719 TPR_2: Tetratricopept 92.5 0.35 7.5E-06 28.5 4.5 31 184-215 3-33 (34)
276 PF13512 TPR_18: Tetratricopep 92.4 3.3 7.1E-05 34.0 11.2 23 36-58 60-82 (142)
277 PF14605 Nup35_RRM_2: Nup53/35 92.3 0.28 6E-06 32.9 4.2 43 392-441 2-44 (53)
278 PF03704 BTAD: Bacterial trans 92.3 1.2 2.7E-05 36.7 9.2 61 184-245 64-124 (146)
279 KOG0548 Molecular co-chaperone 92.3 13 0.00029 37.1 17.3 67 178-245 388-454 (539)
280 PF08777 RRM_3: RNA binding mo 92.3 0.26 5.6E-06 38.4 4.6 44 392-441 2-45 (105)
281 COG3071 HemY Uncharacterized e 92.2 11 0.00025 36.2 28.1 215 25-246 120-357 (400)
282 PF06552 TOM20_plant: Plant sp 92.1 3.3 7.2E-05 35.4 11.1 55 3-58 9-70 (186)
283 PF07719 TPR_2: Tetratricopept 91.7 0.46 1E-05 27.9 4.3 32 25-56 3-34 (34)
284 PRK15331 chaperone protein Sic 91.5 7.7 0.00017 32.7 14.8 86 193-282 48-133 (165)
285 PRK15331 chaperone protein Sic 91.3 5.1 0.00011 33.8 11.4 102 19-122 33-134 (165)
286 KOG0543 FKBP-type peptidyl-pro 91.1 8.9 0.00019 37.0 14.1 65 180-245 289-354 (397)
287 PF13181 TPR_8: Tetratricopept 90.9 0.69 1.5E-05 27.2 4.6 32 183-215 2-33 (34)
288 KOG4555 TPR repeat-containing 90.7 4.6 9.9E-05 32.6 10.0 82 194-278 55-139 (175)
289 KOG3081 Vesicle coat complex C 90.7 13 0.00028 33.9 20.3 181 59-269 74-256 (299)
290 KOG4454 RNA binding protein (R 90.6 0.15 3.3E-06 44.1 1.8 37 391-427 9-45 (267)
291 PF04733 Coatomer_E: Coatomer 90.4 8.6 0.00019 36.1 13.5 80 164-244 183-263 (290)
292 KOG0543 FKBP-type peptidyl-pro 90.1 7.8 0.00017 37.4 12.8 89 156-245 223-319 (397)
293 KOG2376 Signal recognition par 89.7 26 0.00055 35.7 22.0 114 164-278 357-482 (652)
294 KOG0115 RNA-binding protein p5 89.7 0.23 4.9E-06 44.2 2.2 49 392-441 32-80 (275)
295 KOG0624 dsRNA-activated protei 89.6 19 0.00041 34.2 24.0 48 198-245 322-369 (504)
296 PF13424 TPR_12: Tetratricopep 89.5 2.4 5.1E-05 30.6 7.3 70 213-282 1-71 (78)
297 KOG4555 TPR repeat-containing 89.3 5.8 0.00012 32.0 9.5 88 36-125 56-147 (175)
298 PF13174 TPR_6: Tetratricopept 89.2 0.75 1.6E-05 26.7 3.7 28 188-216 6-33 (33)
299 PF00515 TPR_1: Tetratricopept 89.2 1.5 3.1E-05 25.8 5.0 31 184-215 3-33 (34)
300 PRK10866 outer membrane biogen 89.0 18 0.00038 33.0 19.1 55 3-59 50-105 (243)
301 PF06552 TOM20_plant: Plant sp 89.0 5.4 0.00012 34.1 9.8 81 40-120 8-100 (186)
302 KOG3824 Huntingtin interacting 88.9 1.1 2.3E-05 41.5 5.9 51 194-245 128-178 (472)
303 PF08675 RNA_bind: RNA binding 88.8 1.4 3E-05 32.3 5.3 40 393-440 10-49 (87)
304 PF00515 TPR_1: Tetratricopept 88.2 1 2.2E-05 26.5 3.8 31 25-55 3-33 (34)
305 KOG1190 Polypyrimidine tract-b 88.0 0.73 1.6E-05 43.8 4.4 45 391-441 28-72 (492)
306 KOG0112 Large RNA-binding prot 87.5 0.21 4.5E-06 52.1 0.6 53 388-441 369-421 (975)
307 KOG0548 Molecular co-chaperone 86.9 11 0.00025 37.6 12.0 91 33-125 368-458 (539)
308 KOG2376 Signal recognition par 86.8 39 0.00085 34.5 21.5 67 179-246 172-253 (652)
309 KOG0106 Alternative splicing f 86.4 0.76 1.6E-05 40.5 3.4 47 387-441 95-141 (216)
310 PF13525 YfiO: Outer membrane 86.3 5.8 0.00013 34.9 9.2 55 3-58 23-77 (203)
311 KOG2314 Translation initiation 86.2 1.4 3E-05 43.8 5.3 52 389-441 56-113 (698)
312 KOG1365 RNA-binding protein Fu 85.9 2.8 6E-05 39.7 6.9 49 392-441 162-214 (508)
313 KOG0530 Protein farnesyltransf 85.8 28 0.0006 31.8 14.1 75 169-244 99-174 (318)
314 PF13174 TPR_6: Tetratricopept 85.6 1.4 3.1E-05 25.4 3.5 22 35-56 12-33 (33)
315 PF13181 TPR_8: Tetratricopept 85.0 1.8 3.8E-05 25.4 3.7 32 24-55 2-33 (34)
316 KOG4234 TPR repeat-containing 85.0 2.3 5.1E-05 36.9 5.5 68 34-104 106-173 (271)
317 PF15297 CKAP2_C: Cytoskeleton 84.9 14 0.00031 35.0 11.1 52 195-246 115-169 (353)
318 PF10602 RPN7: 26S proteasome 84.9 23 0.00049 30.5 11.8 62 183-245 37-101 (177)
319 TIGR02996 rpt_mate_G_obs repea 84.5 2 4.3E-05 26.9 3.6 26 46-71 5-30 (42)
320 PRK04841 transcriptional regul 83.3 78 0.0017 34.9 26.0 61 185-246 694-760 (903)
321 COG1729 Uncharacterized protei 83.2 12 0.00027 34.1 9.7 46 198-245 156-206 (262)
322 KOG1166 Mitotic checkpoint ser 83.0 17 0.00037 39.8 12.2 71 198-270 93-165 (974)
323 KOG1855 Predicted RNA-binding 82.8 2.4 5.2E-05 40.8 5.2 37 390-426 230-266 (484)
324 COG4785 NlpI Lipoprotein NlpI, 82.8 34 0.00074 30.4 18.4 50 40-90 82-131 (297)
325 KOG2253 U1 snRNP complex, subu 81.8 1.2 2.6E-05 45.2 3.0 44 389-441 38-81 (668)
326 PF15297 CKAP2_C: Cytoskeleton 81.8 15 0.00032 34.9 9.9 60 71-131 116-178 (353)
327 PF13176 TPR_7: Tetratricopept 79.7 4.2 9.2E-05 24.4 3.9 26 220-245 2-27 (36)
328 KOG4307 RNA binding protein RB 79.5 2.4 5.2E-05 43.3 4.1 54 387-441 430-484 (944)
329 KOG1365 RNA-binding protein Fu 79.3 1.7 3.6E-05 41.1 2.8 50 391-441 280-332 (508)
330 PF11608 Limkain-b1: Limkain b 79.1 4.5 9.7E-05 29.8 4.4 39 393-441 4-47 (90)
331 PF10300 DUF3808: Protein of u 79.0 76 0.0017 32.1 19.3 95 26-121 191-295 (468)
332 PF13176 TPR_7: Tetratricopept 78.5 3.8 8.1E-05 24.6 3.4 26 26-51 2-27 (36)
333 TIGR02996 rpt_mate_G_obs repea 78.4 2.9 6.3E-05 26.2 2.8 27 80-106 4-30 (42)
334 PF02259 FAT: FAT domain; Int 78.1 64 0.0014 30.7 15.8 47 182-229 252-304 (352)
335 COG3071 HemY Uncharacterized e 77.6 72 0.0016 30.9 23.5 67 178-246 324-390 (400)
336 KOG4211 Splicing factor hnRNP- 77.0 4.1 8.9E-05 40.0 4.8 37 389-426 8-44 (510)
337 KOG4642 Chaperone-dependent E3 76.8 24 0.00052 31.8 9.1 82 163-245 25-106 (284)
338 PF10602 RPN7: 26S proteasome 75.9 11 0.00025 32.3 6.9 68 218-285 37-104 (177)
339 KOG4210 Nuclear localization s 74.9 1.7 3.7E-05 40.5 1.7 53 389-441 86-138 (285)
340 PF08640 U3_assoc_6: U3 small 74.9 3.8 8.3E-05 30.3 3.2 31 2-36 26-56 (83)
341 KOG1972 Uncharacterized conser 74.4 5.5 0.00012 41.7 5.2 50 53-103 832-881 (913)
342 KOG4642 Chaperone-dependent E3 73.5 23 0.00049 31.9 8.0 80 39-120 26-105 (284)
343 PF04184 ST7: ST7 protein; In 73.0 67 0.0015 32.3 11.9 137 73-243 183-321 (539)
344 KOG3785 Uncharacterized conser 73.0 44 0.00096 31.9 10.2 80 162-244 36-118 (557)
345 smart00028 TPR Tetratricopepti 73.0 7.3 0.00016 21.2 3.7 31 25-55 3-33 (34)
346 COG4499 Predicted membrane pro 72.4 23 0.0005 33.9 8.3 80 200-291 300-385 (434)
347 COG0457 NrfG FOG: TPR repeat [ 71.9 60 0.0013 27.4 23.1 194 29-245 65-264 (291)
348 COG4105 ComL DNA uptake lipopr 71.6 81 0.0018 28.7 21.6 76 24-102 35-116 (254)
349 PRK04841 transcriptional regul 70.4 1.7E+02 0.0038 32.1 26.5 199 34-245 420-640 (903)
350 KOG4234 TPR repeat-containing 70.3 76 0.0016 27.9 12.2 95 106-218 108-203 (271)
351 KOG4454 RNA binding protein (R 68.5 1.7 3.6E-05 37.9 0.1 53 387-440 76-132 (267)
352 KOG1166 Mitotic checkpoint ser 67.2 1.5E+02 0.0033 32.8 14.2 97 22-122 33-143 (974)
353 COG4976 Predicted methyltransf 67.0 17 0.00036 32.5 5.8 52 193-245 6-57 (287)
354 COG1729 Uncharacterized protei 66.4 89 0.0019 28.7 10.6 62 188-251 184-248 (262)
355 COG3947 Response regulator con 62.3 33 0.00071 31.9 7.0 30 75-104 296-325 (361)
356 KOG3617 WD40 and TPR repeat-co 59.9 2.6E+02 0.0056 30.3 22.9 61 183-244 913-994 (1416)
357 KOG4648 Uncharacterized conser 59.6 49 0.0011 31.5 7.8 82 163-245 112-193 (536)
358 KOG1920 IkappaB kinase complex 58.6 3.1E+02 0.0068 30.9 20.2 64 75-146 890-954 (1265)
359 KOG2891 Surface glycoprotein [ 57.6 10 0.00023 34.2 3.0 48 393-440 151-215 (445)
360 KOG0112 Large RNA-binding prot 56.7 14 0.0003 39.3 4.1 47 389-441 453-499 (975)
361 KOG1190 Polypyrimidine tract-b 55.3 24 0.00052 34.0 5.1 48 389-440 412-459 (492)
362 KOG3081 Vesicle coat complex C 54.9 1.3E+02 0.0029 27.7 9.5 121 4-125 152-274 (299)
363 COG3629 DnrI DNA-binding trans 54.7 1.7E+02 0.0036 27.3 10.4 58 27-85 157-214 (280)
364 KOG0529 Protein geranylgeranyl 54.2 1.7E+02 0.0037 28.7 10.6 92 43-134 95-192 (421)
365 PRK10941 hypothetical protein; 52.5 95 0.0021 28.7 8.6 56 36-92 194-249 (269)
366 COG4700 Uncharacterized protei 52.1 1.6E+02 0.0035 25.7 15.6 117 106-245 102-225 (251)
367 COG4105 ComL DNA uptake lipopr 52.1 1.9E+02 0.0041 26.4 17.5 88 3-91 52-149 (254)
368 KOG0890 Protein kinase of the 51.9 5.4E+02 0.012 31.6 21.7 229 24-263 1703-1971(2382)
369 PF04781 DUF627: Protein of un 51.5 1.2E+02 0.0025 23.8 8.1 85 193-284 7-105 (111)
370 KOG2114 Vacuolar assembly/sort 50.3 1.9E+02 0.0041 31.1 10.9 56 156-212 342-397 (933)
371 PF14853 Fis1_TPR_C: Fis1 C-te 50.0 62 0.0013 21.5 5.1 25 193-218 12-36 (53)
372 KOG4307 RNA binding protein RB 50.0 35 0.00076 35.4 5.6 48 393-441 869-917 (944)
373 COG3629 DnrI DNA-binding trans 49.6 89 0.0019 29.0 7.8 61 184-245 155-215 (280)
374 TIGR03504 FimV_Cterm FimV C-te 48.6 37 0.00081 21.6 3.7 24 188-212 5-28 (44)
375 COG5175 MOT2 Transcriptional r 48.0 24 0.00052 33.0 3.8 35 391-425 114-154 (480)
376 KOG2416 Acinus (induces apopto 47.1 12 0.00025 37.9 1.8 48 388-441 441-489 (718)
377 TIGR00756 PPR pentatricopeptid 46.8 52 0.0011 18.5 4.3 26 220-245 3-28 (35)
378 PF13041 PPR_2: PPR repeat fam 45.9 54 0.0012 21.0 4.4 28 219-246 5-32 (50)
379 COG4976 Predicted methyltransf 45.6 32 0.0007 30.8 4.1 58 34-92 6-63 (287)
380 KOG1972 Uncharacterized conser 45.0 4.2E+02 0.0092 28.6 12.4 46 182-228 836-881 (913)
381 KOG4648 Uncharacterized conser 43.9 90 0.002 29.8 6.9 83 35-125 109-197 (536)
382 COG3118 Thioredoxin domain-con 43.6 1.5E+02 0.0031 27.8 8.1 83 195-280 147-229 (304)
383 PF13374 TPR_10: Tetratricopep 43.1 66 0.0014 19.1 4.4 27 219-245 4-30 (42)
384 KOG1308 Hsp70-interacting prot 42.0 17 0.00037 34.4 1.9 87 35-125 126-214 (377)
385 PF12583 TPPII_N: Tripeptidyl 41.6 37 0.0008 27.4 3.4 32 198-229 91-122 (139)
386 KOG1308 Hsp70-interacting prot 40.1 31 0.00066 32.8 3.3 79 164-245 130-210 (377)
387 PF01535 PPR: PPR repeat; Int 40.0 57 0.0012 17.9 3.4 25 220-244 3-27 (31)
388 PF10579 Rapsyn_N: Rapsyn N-te 39.8 1.4E+02 0.003 21.9 5.9 48 198-245 21-68 (80)
389 PF12854 PPR_1: PPR repeat 39.7 59 0.0013 19.0 3.5 24 184-208 9-32 (34)
390 KOG1456 Heterogeneous nuclear 39.5 80 0.0017 30.2 5.8 50 386-440 282-332 (494)
391 PRK14136 recX recombination re 39.1 3.4E+02 0.0073 25.6 12.7 137 77-243 161-302 (309)
392 cd02684 MIT_2 MIT: domain cont 36.6 1.6E+02 0.0035 21.1 6.4 16 230-245 19-34 (75)
393 PF15513 DUF4651: Domain of un 36.5 72 0.0016 22.0 3.8 17 406-422 9-25 (62)
394 PF13041 PPR_2: PPR repeat fam 36.2 1.1E+02 0.0025 19.4 5.5 32 184-216 5-38 (50)
395 PF05172 Nup35_RRM: Nup53/35/4 34.8 81 0.0017 24.2 4.4 31 391-422 6-36 (100)
396 KOG1585 Protein required for f 33.9 3.8E+02 0.0081 24.6 20.2 65 213-278 186-251 (308)
397 KOG2690 Uncharacterized conser 33.4 73 0.0016 29.8 4.5 45 77-122 193-238 (331)
398 KOG4008 rRNA processing protei 32.4 33 0.00072 30.5 2.1 34 389-422 38-71 (261)
399 PF14561 TPR_20: Tetratricopep 31.7 2.2E+02 0.0048 21.2 9.0 68 204-272 9-76 (90)
400 KOG4410 5-formyltetrahydrofola 31.5 1.3E+02 0.0028 27.7 5.7 43 393-441 332-375 (396)
401 PF09707 Cas_Cas2CT1978: CRISP 31.1 88 0.0019 23.3 3.8 45 393-440 27-71 (86)
402 cd02677 MIT_SNX15 MIT: domain 30.9 1.8E+02 0.0039 20.9 5.4 14 231-244 20-33 (75)
403 KOG1456 Heterogeneous nuclear 29.8 1.8E+02 0.0039 28.0 6.4 43 393-441 33-75 (494)
404 PF08631 SPO22: Meiosis protei 28.8 4.7E+02 0.01 24.1 18.1 79 41-120 105-184 (278)
405 KOG3364 Membrane protein invol 28.7 1.7E+02 0.0036 24.1 5.3 18 198-215 86-103 (149)
406 KOG1130 Predicted G-alpha GTPa 28.1 2.6E+02 0.0057 27.6 7.4 87 158-245 165-263 (639)
407 COG3947 Response regulator con 27.9 3E+02 0.0064 25.9 7.3 54 188-242 285-338 (361)
408 KOG3364 Membrane protein invol 27.7 2.5E+02 0.0054 23.1 6.1 70 183-254 35-106 (149)
409 cd02683 MIT_1 MIT: domain cont 27.2 1.9E+02 0.0041 20.9 5.0 27 229-265 18-44 (77)
410 KOG1548 Transcription elongati 26.6 1.5E+02 0.0033 28.2 5.4 50 388-441 262-322 (382)
411 smart00101 14_3_3 14-3-3 homol 26.1 5E+02 0.011 23.6 12.2 55 158-212 145-200 (244)
412 COG0724 RNA-binding proteins ( 25.5 97 0.0021 27.8 4.3 50 388-437 222-271 (306)
413 PF03468 XS: XS domain; Inter 24.8 59 0.0013 25.7 2.2 46 393-441 10-64 (116)
414 PRK15490 Vi polysaccharide bio 24.6 4E+02 0.0088 27.7 8.5 53 187-242 47-99 (578)
415 KOG3346 Phosphatidylethanolami 24.6 2E+02 0.0044 24.9 5.5 45 389-442 84-130 (185)
416 PRK10941 hypothetical protein; 24.2 5.7E+02 0.012 23.6 10.0 56 190-246 189-244 (269)
417 PF10300 DUF3808: Protein of u 24.1 7.5E+02 0.016 25.0 20.4 86 167-257 252-342 (468)
418 KOG0739 AAA+-type ATPase [Post 23.9 4.6E+02 0.01 24.9 7.9 27 230-266 23-49 (439)
419 PF07721 TPR_4: Tetratricopept 23.9 1.3E+02 0.0029 16.2 3.2 20 187-207 6-25 (26)
420 PF08780 NTase_sub_bind: Nucle 23.4 3.9E+02 0.0084 21.3 9.2 61 184-244 43-108 (124)
421 COG1017 Hmp Hemoglobin-like fl 22.3 3E+02 0.0065 22.6 5.6 46 236-283 39-84 (150)
422 PF12583 TPPII_N: Tripeptidyl 22.3 2.7E+02 0.0058 22.6 5.3 46 24-69 70-122 (139)
423 PF15053 Njmu-R1: Mjmu-R1-like 22.2 4.4E+02 0.0095 25.2 7.5 40 386-426 32-81 (353)
424 PF11846 DUF3366: Domain of un 21.9 3E+02 0.0065 23.7 6.4 45 199-244 127-171 (193)
425 PF13812 PPR_3: Pentatricopept 20.9 1.7E+02 0.0037 16.3 4.3 21 223-243 7-27 (34)
426 COG0030 KsgA Dimethyladenosine 20.4 1E+02 0.0022 28.3 3.1 35 392-426 96-130 (259)
427 KOG2068 MOT2 transcription fac 20.2 72 0.0015 30.1 2.0 36 392-427 78-116 (327)
No 1
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=324.02 Aligned_cols=417 Identities=29% Similarity=0.452 Sum_probs=299.8
Q ss_pred hHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 013489 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (442)
Q Consensus 5 r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (442)
+..||..++..+. .++.|+.|++||+..|++-++..+|||++...+.+.++|+.|..|+...++.+..+..++-||
T Consensus 298 ~~~~e~~~q~~~~----~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra 373 (881)
T KOG0128|consen 298 LFKFERLVQKEPI----KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRA 373 (881)
T ss_pred HHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchh
Confidence 3456666666554 788999999999999999999999999999999999999999999998888888889999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHH
Q 013489 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (442)
Q Consensus 85 l~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~ 164 (442)
+++|||.+.||..|+..+++.......+-..|+++++.++. ++..++-+.++... +....+++.+|.+|
T Consensus 374 ~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-------l~~~~~~~rr~~~~----~~~s~~~s~lr~~F 442 (881)
T KOG0128|consen 374 VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-------LHNDYLAYRRRCTN----IIDSQDYSSLRAAF 442 (881)
T ss_pred hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-------HHHHHHHHHHhhcc----cchhhhHHHHHHHH
Confidence 99999999999999999999888888899999998875443 22222222222221 12236788999999
Q ss_pred HHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHhcccHHHHHHHHHH
Q 013489 165 QRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 165 ~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~-~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
..|..+|...+.. .++.++++..||++|+.++++++.||.||+.++........ .|+.|+++|..+|+...||.++.+
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ 522 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRK 522 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHH
Confidence 9999999999887 88899999999999999999999999999999998555554 999999999999999999999999
Q ss_pred HHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhchhHHHHHHHHHhhhhccCCCchhhhhhhcccccccccCCCC
Q 013489 243 CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELRLFRSQQESKSLPESADQKEHSVKKTGREKRKSDS 322 (442)
Q Consensus 243 al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~ 322 (442)
|+.....++....|++.|..||+++|+++.+..+..+.+++.......+.+.+.+...+.+..+ +..+.+++...
T Consensus 523 ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~k-----e~~~~~~k~~~ 597 (881)
T KOG0128|consen 523 AYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVYPEQQKK-----EIQRRQFKGEG 597 (881)
T ss_pred HHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCCcchhhH-----HhhHHHhhccc
Confidence 9986555555668999999999999999999999999999887666655555544422111111 11111111111
Q ss_pred CCCccCCchhhcccCCCC-CCccchhhhhhhhhhhhhhcccCCcccccCCCCCCCCcCCCCCCCCCCCCCceEEEcCCCC
Q 013489 323 NISYEQSPAKRQKHAPQK-PKKVHDKEKRQVQNLAEENEGRETKQTVEEQPKKQPIKDAVPGRTKGFTDECTAFLSNINL 401 (442)
Q Consensus 323 ~~~~~~~~~k~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~ 401 (442)
+..+-..|+++.+...+. .-..-+...+..++.+++..+......++....+..+....+..+...++.+++||+||+.
T Consensus 598 ~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~ 677 (881)
T KOG0128|consen 598 NVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSP 677 (881)
T ss_pred ccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcch
Confidence 111111111111111000 0000000000000111111111111111111112223344444455557788999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 402 KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 402 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.+.+|...|+.+|.+..+++.....+|+.||.|||+|.
T Consensus 678 ~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~ 717 (881)
T KOG0128|consen 678 KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFL 717 (881)
T ss_pred hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEee
Confidence 9999999999999999988888755678999999999995
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-31 Score=247.48 Aligned_cols=243 Identities=23% Similarity=0.407 Sum_probs=211.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
..|..||..|+++.. +++.|+.|+.||..++++.+|+.+|||||.....+..||+.|+.+..++ +..+.++.|++
T Consensus 57 RkRkefEd~irrnR~----~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~d 131 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRL----NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWD 131 (677)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHH
Confidence 478999999999876 8999999999999999999999999999999999999999999987754 56688999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh-h-HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-T-FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~-~-~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (442)
|||+.+|....+|..|+. +|...+++..+++||++.+...|+ . |..|+.+.+.| .++...
T Consensus 132 RAvt~lPRVdqlWyKY~y-mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-----------------keiera 193 (677)
T KOG1915|consen 132 RAVTILPRVDQLWYKYIY-MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-----------------KEIERA 193 (677)
T ss_pred HHHHhcchHHHHHHHHHH-HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-----------------hHHHHH
Confidence 999999999999999997 555689999999999999998776 2 33455544433 355566
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH---HHHHHHHHHHhcccHHHHH
Q 013489 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISMEIELDHINEAR 237 (442)
Q Consensus 161 r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~---~w~~~~~~e~~~g~~~~ar 237 (442)
|+.|++-.- .++.+.-|+.||+||.++| ++..||.+|++|+...++... +...++.||..+..+++||
T Consensus 194 R~IYerfV~--------~HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 194 RSIYERFVL--------VHPKVSNWIKYARFEEKHG-NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHhe--------ecccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665433 3467889999999999999 999999999999999777643 8999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.||+-||. .+|.+..+.|+..|..||..||+...|++++-
T Consensus 265 ~iykyAld-~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 265 FIYKYALD-HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHH-hcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998 57888889999999999999999999998874
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=4.1e-28 Score=225.30 Aligned_cols=215 Identities=25% Similarity=0.450 Sum_probs=162.2
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHhcc
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---------DLWLDYTQYLDKTLK 72 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---------~lW~~Y~~~l~~~~~ 72 (442)
++.|-.||.-|+.+|. +++.|..|+.++...|+.++++.+|||||...|... -||++|+.|.+-..+
T Consensus 305 ~KRk~qYE~~v~~np~----nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY----NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred hhhhhHHHHHHHhCCC----CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778899999999998 999999999999999999999999999999877543 399999999887778
Q ss_pred hhhHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhh
Q 013489 73 VGNVVRDVYSRATKNCPWV----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRIL 146 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s----~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~ 146 (442)
+.+..++||..++..+|+. ..||..|+.+.-+ +.+...++.++-.|+...|. .+..|+++.+..
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL--------- 450 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFKGYIELELQL--------- 450 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH---------
Confidence 8899999999999999985 3799999985554 78889999999999965443 234455444322
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-hHHH-HHHHHH
Q 013489 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLE-AWQSYI 224 (442)
Q Consensus 147 ~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~-~~~~-~w~~~~ 224 (442)
..|++|..+.++.+.-.|..+..|..||.+|..+| +.++||.||+-|++... +.++ +|..||
T Consensus 451 ---------------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 451 ---------------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred ---------------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 33444444444444445566667777777777777 77777777777776633 2232 677777
Q ss_pred HHHHhcccHHHHHHHHHHHHhc
Q 013489 225 SMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+||...|.+++||.+|++.|.+
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh
Confidence 7777777777777777776643
No 4
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=208.96 Aligned_cols=249 Identities=18% Similarity=0.327 Sum_probs=203.3
Q ss_pred hHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCH----HHHHHHHHHHHHhcchhhHHHH
Q 013489 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSS----DLWLDYTQYLDKTLKVGNVVRD 79 (442)
Q Consensus 5 r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~-p~~~----~lW~~Y~~~l~~~~~~~~~~~~ 79 (442)
-+.||+.|.+.|. ..=.|+.||.|..+.++.+.++.++||||... +.-. .+|+.|+++....+ ..+.+..
T Consensus 1444 aeDferlvrssPN----SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~k 1518 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPN----SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKK 1518 (1710)
T ss_pred HHHHHHHHhcCCC----cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHH
Confidence 3579999999886 44489999999999999999999999999864 4332 59999999877665 4467999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHH
Q 013489 80 VYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (442)
Q Consensus 80 v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~ 159 (442)
+|+||+++|- ...++...+.+++. .+.++.+.++|++.+.. +-.-..+|..|.+.|-|+- +-+.
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k-~ek~~~A~ell~~m~KK----F~q~~~vW~~y~~fLl~~n----------e~~a 1582 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEK-SEKNDEADELLRLMLKK----FGQTRKVWIMYADFLLRQN----------EAEA 1582 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHH-hhcchhHHHHHHHHHHH----hcchhhHHHHHHHHHhccc----------HHHH
Confidence 9999999884 24677777776666 46667788888887742 1133567777777775542 3346
Q ss_pred HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHH
Q 013489 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (442)
Q Consensus 160 ~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i 239 (442)
.+..+.+|+.++.+ ....++...+|++|.++| +.+++|.+|+..+..+|...++|.-||++|+.+|+.+.+|.+
T Consensus 1583 a~~lL~rAL~~lPk-----~eHv~~IskfAqLEFk~G-DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPK-----QEHVEFISKFAQLEFKYG-DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHhhcch-----hhhHHHHHHHHHHHhhcC-CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 67888899888743 235678999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 240 YKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 240 ~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
|+|++...++.....-+|..|++||..||+.+.++.+-.++
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 99999877777777889999999999999999888655444
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.5e-21 Score=188.08 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=204.9
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
+|.+|-.+|+..|. +-.+|..-+.||+.+|..+....++++|+..+|..+.+|++|+.--... ++.-.++.++.+
T Consensus 535 arAVya~alqvfp~----k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il~~ 609 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC----KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHhhccc----hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 68899999999886 6678999999999999999999999999999999999999999876654 455668999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHH
Q 013489 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (442)
|+...|+|.+||...+. +|..+...+.+|.+|.+|....+.. .+|+.++ .+....+.
T Consensus 610 af~~~pnseeiwlaavK-le~en~e~eraR~llakar~~sgTe-----Rv~mKs~-----------------~~er~ld~ 666 (913)
T KOG0495|consen 610 AFEANPNSEEIWLAAVK-LEFENDELERARDLLAKARSISGTE-----RVWMKSA-----------------NLERYLDN 666 (913)
T ss_pred HHHhCCCcHHHHHHHHH-HhhccccHHHHHHHHHHHhccCCcc-----hhhHHHh-----------------HHHHHhhh
Confidence 99999999999999887 7777888899999999998754431 2232222 22233356
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
+++|+.+++.++...+....+|+...+++..++ +++.||..|..+++.+|....+|+..+++|...|.+-+||.|++++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 677788887777778888899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
.-+ ++....+|.+-++||..+|+++..+..+.+
T Consensus 746 rlk---NPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 746 RLK---NPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred Hhc---CCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 864 344568999999999999999877655543
No 6
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.90 E-value=2.6e-21 Score=183.08 Aligned_cols=278 Identities=17% Similarity=0.258 Sum_probs=204.1
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh----hHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG----NVV 77 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~----~~~ 77 (442)
-+.|+.||..+...|. ...+|+.||..|....+++.+..+|.|||... ++.+||..|+.|+.+..+.. +.+
T Consensus 36 ~~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 4689999999999887 56789999999999999999999999999875 66999999999998764332 456
Q ss_pred HHHHHHHHHcC---CCcHHHHHHHHHHHHH--------ccCCHHHHHHHHHHHHhCChhhH----HHHHHHHHHHHHHHH
Q 013489 78 RDVYSRATKNC---PWVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFSTF----EEYLDLFLTRIDGLR 142 (442)
Q Consensus 78 ~~v~erAl~~~---p~s~~lW~~y~~~le~--------~~~~~~~~~~i~~~al~~~~~~~----~~~~~~~~~~~~~l~ 142 (442)
...|+-|+..| +.|..||..|+.|++. .++.++.+|.+|+||+..++.+. .+|.. |..-++.+.
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~-fE~~IN~~t 189 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEA-FEQEINIIT 189 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHH-HHHHHHHHH
Confidence 78899998877 6788999999999874 23467889999999999887642 23322 211111100
Q ss_pred -HHhhc----------------------------c---C----------ccchhhhHH----------------------
Q 013489 143 -RRILF----------------------------S---G----------EVEGVLDYS---------------------- 158 (442)
Q Consensus 143 -rr~~~----------------------------~---~----------~~~~~~~~~---------------------- 158 (442)
|++.. . . .|-.+++|+
T Consensus 190 arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yaye 269 (656)
T KOG1914|consen 190 ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYE 269 (656)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHH
Confidence 00000 0 0 000000000
Q ss_pred -----------------------------------------HHHHHH---------------------------------
Q 013489 159 -----------------------------------------LIRETF--------------------------------- 164 (442)
Q Consensus 159 -----------------------------------------~~r~~~--------------------------------- 164 (442)
.++..+
T Consensus 270 Q~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~ 349 (656)
T KOG1914|consen 270 QCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKK 349 (656)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhh
Confidence 001111
Q ss_pred ---------------------------------HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013489 165 ---------------------------------QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (442)
Q Consensus 165 ---------------------------------~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~ 211 (442)
.-|..++.++-...-+..+++...|-+|+...+|...|-.||+-+|+
T Consensus 350 ~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 350 VHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLK 429 (656)
T ss_pred hHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 11223333332222223467888888998888899999999999999
Q ss_pred hchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhchhHH
Q 013489 212 ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (442)
Q Consensus 212 ~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~~~~ 285 (442)
.+++.+.+-..|++|....|+-.++|.+|+|++.+.++.+....||+.|++||-.+|++..+.++.++-..++.
T Consensus 430 kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 430 KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997677777889999999999999999999877766544443
No 7
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.89 E-value=9.9e-21 Score=182.20 Aligned_cols=235 Identities=17% Similarity=0.295 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC--cHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRSL 99 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~--s~~lW~~y~ 99 (442)
++.+|..|+++|+..|.++...++|+|.|..---.|.+=++|+.||+++ .-.+.+.++|+|.+..+|| ..+||..|+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 3679999999999999999999999999998888999999999999976 3567799999999998854 678999999
Q ss_pred H-HHHHccCC-HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 013489 100 L-SLERSRAS-EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (442)
Q Consensus 100 ~-~le~~~~~-~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~ 177 (442)
. +..+.++. .+.+|.+|++||...++...- .+|+.|...-. +++-......++++|..-+.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aK--tiyLlYA~lEE----------e~GLar~amsiyerat~~v~----- 617 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAK--TIYLLYAKLEE----------EHGLARHAMSIYERATSAVK----- 617 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHH----------HhhHHHHHHHHHHHHHhcCC-----
Confidence 6 55555443 688999999999765553222 22332321110 00111112244555544331
Q ss_pred chhhHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhchhH--HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013489 178 TDGLLRLYAYWAH-LEQSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (442)
Q Consensus 178 ~~~~~~l~~~~a~-~e~~~~~~~~~ar~i~~~~l~~~~~~--~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (442)
....+++|..|+. .....| +...|.||+++|+..|++ .++.+.|++||.+.|.+++||.||..+-+ .+++....
T Consensus 618 ~a~~l~myni~I~kaae~yG--v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYG--VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCCh
Confidence 2345778888876 444556 899999999999997765 46999999999999999999999999987 45666677
Q ss_pred HHHHHHHHHHHHhCCHhhHHHHH
Q 013489 255 DICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 255 ~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
.+|+.|-.||-.|||.+++.+-+
T Consensus 695 ~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Confidence 89999999999999999887643
No 8
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.86 E-value=1.3e-19 Score=175.00 Aligned_cols=274 Identities=19% Similarity=0.316 Sum_probs=210.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.+|..|...|.+.|. .+..|.+|+++|.+.|..+.+.++|||+|...|.+.++|++|+.++.+..++++.++..|+
T Consensus 63 ~~r~~y~~fL~kyPl----~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 63 ALREVYDIFLSKYPL----CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHhhCcc----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 578999999999997 8889999999999999999999999999999999999999999999988888888999999
Q ss_pred HHHHcCC---CcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhh-------------
Q 013489 83 RATKNCP---WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL------------- 146 (442)
Q Consensus 83 rAl~~~p---~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~------------- 146 (442)
||+..+. .|+.+|-.||.+. ..+.+-..+-.||+|.+..+......+.+.|...++...-++.
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~e-n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFE-NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHH-hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 9999885 4789999999955 4577888999999999988777666666666554432100000
Q ss_pred cc-----------Cccc----------hhhhHH---------HHHHHH-------------HHHHHHHhhhhcC-chhhH
Q 013489 147 FS-----------GEVE----------GVLDYS---------LIRETF-------------QRASDYLSEQMKN-TDGLL 182 (442)
Q Consensus 147 ~~-----------~~~~----------~~~~~~---------~~r~~~-------------~~a~~~l~~~~~~-~~~~~ 182 (442)
.. +.++ ...+.. ..+.++ +..+..-...+.. ....+
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 00 0000 011110 011112 1111111111222 23467
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR 262 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~ 262 (442)
..|.+|..++...| +.+.+.-+|++++-.+..+.++|+.|+.+....|+.+-|..++.++.... .... ..|--.|..
T Consensus 298 ~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~-~~i~L~~a~ 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKT-PIIHLLEAR 374 (577)
T ss_pred HHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCC-cHHHHHHHH
Confidence 89999999999999 99999999999999999999999999999999999999999999999743 3333 357778889
Q ss_pred HHHHhCCHhhHHHHHHhhchhH
Q 013489 263 FEREYGTLEDFDHSVQKVTPRL 284 (442)
Q Consensus 263 fE~~~G~~~~~~~~~~~~~~~~ 284 (442)
||+..|+..+...+++++...+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC
Confidence 9999999998887777765443
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.82 E-value=4.1e-18 Score=164.36 Aligned_cols=256 Identities=18% Similarity=0.289 Sum_probs=185.5
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-------hhhHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-------VGNVVR 78 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~-------~~~~~~ 78 (442)
.+||.-|.++|. ++..|..||++-.. ....++..+||||++..|.+..+|.+|+..-..+.+ ..+.+.
T Consensus 14 vpfEeEilRnp~----svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn 88 (835)
T KOG2047|consen 14 VPFEEEILRNPF----SVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVN 88 (835)
T ss_pred cchHHHHHcCch----hHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence 379999999988 89999999997654 344677889999999999999999999976554321 224588
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh-----hHHHHHHHHHH-----HHHHHHHHhh--
Q 013489 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLT-----RIDGLRRRIL-- 146 (442)
Q Consensus 79 ~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~-----~~~~~~~~~~~-----~~~~l~rr~~-- 146 (442)
..|+|++...-..+.||..|+.++-. ++.+..+|.+|.+||..-+- .|..|+.+... .+-.+.||.+
T Consensus 89 ~c~er~lv~mHkmpRIwl~Ylq~l~~-Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPRIWLDYLQFLIK-QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh-cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 89999999777777999999997765 68899999999999965432 23344433321 1112224443
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHHhhhhc-------CchhhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhchhHH
Q 013489 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMK-------NTDGLLRLYAYWAHLEQSMGKD--MVSARGVWERLLKISGAML 217 (442)
Q Consensus 147 ~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~-------~~~~~~~l~~~~a~~e~~~~~~--~~~ar~i~~~~l~~~~~~~ 217 (442)
.+...++++++-...+..++|...+...+. ...+...+|...-.+-..+.+. --..-+|+..++..++++.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 233455555554444445555444433322 1344567888776665554311 1245678888999999997
Q ss_pred H-HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013489 218 E-AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (442)
Q Consensus 218 ~-~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (442)
- +|...+++..+.|.+++||.+|+.|++....-.+...||+.|.+||+.+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~ 298 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESC 298 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999999999987666666778999999999875
No 10
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=5.8e-17 Score=156.73 Aligned_cols=211 Identities=20% Similarity=0.293 Sum_probs=156.3
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
.+..++..+|. ....|+.|+..-...||...++.+..+|+..+|++.++|+.-+.+...+ ...+.++.+|.+|..
T Consensus 572 llqkav~~~pk----ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en-~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPK----AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN-DELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCc----chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHhc
Confidence 45556666665 4558999999888899999999999999999999999999999977644 456889999999987
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHH
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~ 166 (442)
.-| ...+|..++. +|+..+..+++.+++++||..-+. +-.+|+..-+.. +.-.+++..|.+|..
T Consensus 647 ~sg-TeRv~mKs~~-~er~ld~~eeA~rllEe~lk~fp~----f~Kl~lmlGQi~----------e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 647 ISG-TERVWMKSAN-LERYLDNVEEALRLLEEALKSFPD----FHKLWLMLGQIE----------EQMENIEMAREAYLQ 710 (913)
T ss_pred cCC-cchhhHHHhH-HHHHhhhHHHHHHHHHHHHHhCCc----hHHHHHHHhHHH----------HHHHHHHHHHHHHHh
Confidence 555 5689999998 777789999999999999975332 222332211110 000122333344433
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+ ...+|++.-+|+..+++|.+.| ++.+||.+++++.-.+|++..+|++.|.||.+.|+.+.|+.+..+||+.
T Consensus 711 G-------~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 711 G-------TKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred c-------cccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 3335666668888888888887 7888888888888888888888888888888888888888888888763
No 11
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.79 E-value=1.5e-17 Score=172.09 Aligned_cols=212 Identities=19% Similarity=0.287 Sum_probs=173.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC-CCc----HHHHHHHHHHHHHccCCHHHHHHHHH
Q 013489 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PWV----GELWVRSLLSLERSRASEEEISTVFE 117 (442)
Q Consensus 43 ~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~-p~s----~~lW~~y~~~le~~~~~~~~~~~i~~ 117 (442)
..=|+|.+..+|++.-+|+.|+.|... ..+.+.++.+++|||..+ +.- ..||..|+. ||...++.+.+..+|+
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~Le-lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lN-lEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLE-LSEIEKARKIAERALKTINFREEEEKLNIWIAYLN-LENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhh-hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHh-HHHhhCcHHHHHHHHH
Confidence 456999999999999999999999884 456788999999999977 332 259999987 8888899999999999
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCC
Q 013489 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK 197 (442)
Q Consensus 118 ~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~ 197 (442)
||.+..-+ +.+++..+..+ ..-+-|+.|.+++...+....+...+|..|+.+...++
T Consensus 1522 RAcqycd~-----~~V~~~L~~iy-----------------~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n- 1578 (1710)
T KOG1070|consen 1522 RACQYCDA-----YTVHLKLLGIY-----------------EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN- 1578 (1710)
T ss_pred HHHHhcch-----HHHHHHHHHHH-----------------HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc-
Confidence 99974322 23333332222 22244566777777666666667889999999999998
Q ss_pred CHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHH
Q 013489 198 DMVSARGVWERLLKISGA--MLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDH 275 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~--~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~ 275 (442)
.-+.||.++.+||+..|. +.++...++++|..+||.+++|.+|+-.+.. . +...++|..|++.|..||+.+.++.
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-y--PKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-Y--PKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-C--ccchhHHHHHHHHHHccCCHHHHHH
Confidence 889999999999999887 7899999999999999999999999999873 2 2356899999999999999999999
Q ss_pred HHHhhch
Q 013489 276 SVQKVTP 282 (442)
Q Consensus 276 ~~~~~~~ 282 (442)
.++++..
T Consensus 1656 lfeRvi~ 1662 (1710)
T KOG1070|consen 1656 LFERVIE 1662 (1710)
T ss_pred HHHHHHh
Confidence 9988643
No 12
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.72 E-value=8.9e-17 Score=149.70 Aligned_cols=102 Identities=28% Similarity=0.474 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC-hHHHHHH
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG-SEDICHA 259 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~-~~~i~~~ 259 (442)
.+++|..+|.+|..++++...|++||+.+++.+|.+..+|+.|++|+...|+.++||.+|++++.. ++.+. ...||..
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKK 112 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHH
Confidence 346899999999998879999999999999999999999999999999999999999999999984 56555 6789999
Q ss_pred HHHHHHHhCCHhhHHHHHHhhchh
Q 013489 260 WLRFEREYGTLEDFDHSVQKVTPR 283 (442)
Q Consensus 260 ~~~fE~~~G~~~~~~~~~~~~~~~ 283 (442)
|++||..||+++.+.++..++...
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999998877766543
No 13
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.2e-14 Score=137.32 Aligned_cols=136 Identities=23% Similarity=0.423 Sum_probs=104.8
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcC--------------------ChhhHHHHHHHHHhcCCCCHHHHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--------------------DPGRVQLLYERAITDFPVSSDLWL 61 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g--------------------~~~~~~~lyERal~~~p~~~~lW~ 61 (442)
.+.|..||..|.+... ...-+++||.+|.... -+.+|..+|.+|+..++.++.+|.
T Consensus 34 vk~Rr~fE~kL~rr~~----~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~ 109 (568)
T KOG2396|consen 34 VKKRRDFELKLQRRTL----SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWL 109 (568)
T ss_pred HHHHHHHHHHHccCcc----cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4678899999987654 5667888888875421 146788899999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh---HHHHHHHHHHHH
Q 013489 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST---FEEYLDLFLTRI 138 (442)
Q Consensus 62 ~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~---~~~~~~~~~~~~ 138 (442)
+|+.|..+.. ....+..||..+++..|.++.||+..+.++...+.+++.+|.+|.++|.+++.. +.+|+.+.+.++
T Consensus 110 ~yi~f~kk~~-~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 110 SYIAFCKKKK-TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHHHHhc-chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 9999988643 345688899999999999999999988876666777888999999999887763 446666666655
Q ss_pred HHHH
Q 013489 139 DGLR 142 (442)
Q Consensus 139 ~~l~ 142 (442)
.-++
T Consensus 189 ~Kl~ 192 (568)
T KOG2396|consen 189 EKLR 192 (568)
T ss_pred HHHH
Confidence 5443
No 14
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.65 E-value=6.1e-14 Score=130.77 Aligned_cols=267 Identities=17% Similarity=0.221 Sum_probs=183.2
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh-----hH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-----NV 76 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~-----~~ 76 (442)
.+.|+.||..+.-.|. -..+|..|+.-|....++..+..+|-|||... .+.+||.-|+.|+......+ ..
T Consensus 59 ~~~re~yeq~~~pfp~----~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~ 133 (660)
T COG5107 59 DAEREMYEQLSSPFPI----MEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFK 133 (660)
T ss_pred HHHHHHHHHhcCCCcc----ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhh
Confidence 3579999999888776 34589999999999999999999999999874 56999999999998765332 23
Q ss_pred HHHHHHHHHH---cCCCcHHHHHHHHHHHHH--------ccCCHHHHHHHHHHHHhCChhh---HHHHHHHHHHHHHHHH
Q 013489 77 VRDVYSRATK---NCPWVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFST---FEEYLDLFLTRIDGLR 142 (442)
Q Consensus 77 ~~~v~erAl~---~~p~s~~lW~~y~~~le~--------~~~~~~~~~~i~~~al~~~~~~---~~~~~~~~~~~~~~l~ 142 (442)
+.++|+-.+. .-|.++.+|..|..+++. .+..++.+|.+|.||+..++.+ .|.-++-|..-++.+.
T Consensus 134 i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~T 213 (660)
T COG5107 134 IYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKIT 213 (660)
T ss_pred hHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHH
Confidence 5667776666 228899999999998875 2345678999999999988764 2322222222111111
Q ss_pred -HHhhccC-----------------------------------------ccchh--------------------------
Q 013489 143 -RRILFSG-----------------------------------------EVEGV-------------------------- 154 (442)
Q Consensus 143 -rr~~~~~-----------------------------------------~~~~~-------------------------- 154 (442)
|++.... .|-.+
T Consensus 214 arKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q 293 (660)
T COG5107 214 ARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQ 293 (660)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHH
Confidence 1110000 00000
Q ss_pred -----------------------------------------------------hhHHHHHHHHHHHHHHHhhhhc-----
Q 013489 155 -----------------------------------------------------LDYSLIRETFQRASDYLSEQMK----- 176 (442)
Q Consensus 155 -----------------------------------------------------~~~~~~r~~~~~a~~~l~~~~~----- 176 (442)
.|-+.++..|+.|..-|...+.
T Consensus 294 ~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~ 373 (660)
T COG5107 294 ILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESE 373 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhh
Confidence 0111122333333332211110
Q ss_pred ------Cch----------------------------------------------hhHHHHHHHHHHHHHcCCCHHHHHH
Q 013489 177 ------NTD----------------------------------------------GLLRLYAYWAHLEQSMGKDMVSARG 204 (442)
Q Consensus 177 ------~~~----------------------------------------------~~~~l~~~~a~~e~~~~~~~~~ar~ 204 (442)
+++ ...+++++.|-+|....++...|-.
T Consensus 374 ~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ 453 (660)
T COG5107 374 SASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYN 453 (660)
T ss_pred hhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHH
Confidence 000 0112344445566665568889999
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHH
Q 013489 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (442)
Q Consensus 205 i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (442)
||+-++..+|+..-+-..|+.|....|+-++||.+|+.++.+ +..+....||+.|+++|-.+|++..+-
T Consensus 454 ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 454 IFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 999999999999999999999999999999999999999985 444556689999999999999997654
No 15
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.61 E-value=3.3e-13 Score=131.10 Aligned_cols=258 Identities=18% Similarity=0.219 Sum_probs=185.9
Q ss_pred hhhHHHHHHhhcC----CCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH
Q 013489 3 NARAHLEEQISRQ----DLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (442)
Q Consensus 3 ~~r~~yE~~l~~~----~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~ 78 (442)
.+|+.||..|+.. .+.+..++..|+.|++|+...|+.+++..+|+||+..|.+...+|+.|+.++.+. ++.+.+.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~-~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS-GDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc-CchhHHH
Confidence 5789999999875 2457778999999999999999999999999999999999999999999999977 5667789
Q ss_pred HHHHHHHH-cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhH
Q 013489 79 DVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (442)
Q Consensus 79 ~v~erAl~-~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (442)
.++.+|++ ++|..+.|...|+.+.| .++++..++.++++..+--|. ++.+.+.+++.++|+.... +
T Consensus 352 ~~~~~~~~i~~k~~~~i~L~~a~f~e-~~~n~~~A~~~lq~i~~e~pg----~v~~~l~~~~~e~r~~~~~-------~- 418 (577)
T KOG1258|consen 352 NVLARACKIHVKKTPIIHLLEARFEE-SNGNFDDAKVILQRIESEYPG----LVEVVLRKINWERRKGNLE-------D- 418 (577)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHHH-hhccHHHHHHHHHHHHhhCCc----hhhhHHHHHhHHHHhcchh-------h-
Confidence 99999999 67999999999998555 578999999999998865433 2223333333333332110 0
Q ss_pred HHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc---cHH
Q 013489 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HIN 234 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g---~~~ 234 (442)
. .............-.+..-...+...++++-....++.+.|+.++..++...|++..+|+++++|+..++ +++
T Consensus 419 --~-~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d 495 (577)
T KOG1258|consen 419 --A-NYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYD 495 (577)
T ss_pred --h-hHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence 0 0011111111111111122235777789988888889999999999999999999999999999999875 344
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 235 EARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 235 ~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
-.-.+....+......+.+-.--+.|+.|-..+|+......+.
T Consensus 496 ~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~ 538 (577)
T KOG1258|consen 496 LLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDE 538 (577)
T ss_pred hhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhc
Confidence 4444555544432233334334467999999999876555443
No 16
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=129.64 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=84.0
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
..|-.++.+.+. +...|..|+.|.++.+.+.++-.+|..+|..+|+++++|+.-+.++..-+.+.+.++.+|-|++
T Consensus 92 ~lyr~at~rf~~----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 92 FLYRRATNRFNG----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHhcCC----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 367788877765 8899999999999999999999999999999999999999999999876666788999999999
Q ss_pred HcCCCcHHHHHHHHHH
Q 013489 86 KNCPWVGELWVRSLLS 101 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~ 101 (442)
|.+|.|+.||..|+++
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999999999973
No 17
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.53 E-value=1.9e-13 Score=127.42 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
+|+.|+.|.+..+..+.++.+|++|+...+.+..+|+.|+.+...+.++.+.+..||+++++.+|.+..+|..|+.+|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 46666666655555566666666665444455566666655544444555555666666666666666666666654443
Q ss_pred ccCCHHHHHHHHHHHHh
Q 013489 105 SRASEEEISTVFEKSLL 121 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~ 121 (442)
.++.+.+|.+|++++.
T Consensus 83 -~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 83 -LNDINNARALFERAIS 98 (280)
T ss_dssp -TT-HHHHHHHHHHHCC
T ss_pred -hCcHHHHHHHHHHHHH
Confidence 3444555555555553
No 18
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.52 E-value=6.5e-12 Score=119.93 Aligned_cols=244 Identities=18% Similarity=0.246 Sum_probs=172.7
Q ss_pred HHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC
Q 013489 9 EEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC 88 (442)
Q Consensus 9 E~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~ 88 (442)
++.|..+|. +.+.|...+.....+ .++.++..||+.+..+|.++..|..||.-... .++.+.+..+|.|++...
T Consensus 10 ~~rie~nP~----di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPY----DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCc----cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Confidence 677888887 899999999865555 88999999999999999999999999987764 357788999999999855
Q ss_pred CCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHH-HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHH
Q 013489 89 PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFE-EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (442)
Q Consensus 89 p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~-~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~ 165 (442)
-+ -+||..||.+..+..+.....+..--+|..+... .++ ....+|..|+++|+ ..-....+++.+-++.+|..|+
T Consensus 84 Ln-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~-~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 84 LN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE-GVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred hh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH-cccccccHHHHHHHHHHHHHHH
Confidence 43 6899999998877666555444443344332221 111 12356666666664 2222233344456778999999
Q ss_pred HHHHHHhhhhcCchhhHHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHHh-------ch-----------h
Q 013489 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMG------------KDMVSARGVWERLLKI-------SG-----------A 215 (442)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~------------~~~~~ar~i~~~~l~~-------~~-----------~ 215 (442)
+|+.. +.++.-.+|.-|..||..++ ..+..||.+++..... .| .
T Consensus 162 ral~t------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 162 RALVT------PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred HHhcC------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 98774 34556679999999998754 1234777776665532 12 2
Q ss_pred HHHHHHHHHHHHHhcc-c-------HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCC
Q 013489 216 MLEAWQSYISMEIELD-H-------INEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (442)
Q Consensus 216 ~~~~w~~~~~~e~~~g-~-------~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~ 269 (442)
++++|..||++|+..+ . ..++-=+|+.++.. ....++||-.+-.|-...|+
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~---l~~~peiWy~~s~yl~~~s~ 294 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY---LGYHPEIWYDYSMYLIEISD 294 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhhH
Confidence 5679999999999864 1 34666779999863 23456899999888887777
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.36 E-value=8.7e-11 Score=113.96 Aligned_cols=247 Identities=16% Similarity=0.123 Sum_probs=159.8
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
|.+-..||++++-.|. -+++|++..+..+..+-++++...|+||+...|++....-+.+.... ..+..+.+...|
T Consensus 235 ~~aiq~y~eAvkldP~----f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Y 309 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPN----FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTY 309 (966)
T ss_pred HHHHHHHHHhhcCCCc----chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHH
Confidence 4556678888877764 56678888887777788888888888888888877766555544333 234567788889
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH----------HHHHHhhccCcc
Q 013489 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRID----------GLRRRILFSGEV 151 (442)
Q Consensus 82 erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~----------~l~rr~~~~~~~ 151 (442)
+||+..-|+-...+...+..|.. .|+..++...|.+||...+...+.+..+-..+-+ |+..-...+.-.
T Consensus 310 kral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a 388 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA 388 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh
Confidence 99998888888888887776654 5788888889999887666543333222211100 000000001000
Q ss_pred c---hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 013489 152 E---GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (442)
Q Consensus 152 ~---~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~ 228 (442)
. ...-+-.-++.+++|+.+...++.-.|...+.+......+..+| +++.|.+.|.++++.+|...+.....+...+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g-~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG-DVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh-hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 0 00112223445566777666666555555566666666666667 7777777777777777777777777777777
Q ss_pred hcccHHHHHHHHHHHHhcccCCCChHHHH
Q 013489 229 ELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (442)
Q Consensus 229 ~~g~~~~ar~i~~ral~~~~~~~~~~~i~ 257 (442)
..|++..|..-|+.||. +.+|.|+.-+
T Consensus 468 DsGni~~AI~sY~~aLk--lkPDfpdA~c 494 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALK--LKPDFPDAYC 494 (966)
T ss_pred ccCCcHHHHHHHHHHHc--cCCCCchhhh
Confidence 77777777777777775 5666665333
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.30 E-value=1.3e-09 Score=113.60 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=150.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++-..|+.+|.... ..+.....|.....+....|+++.+...|+++|..+|.+...|+..+..+.. .++.+.+...|+
T Consensus 312 ~A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~ 389 (615)
T TIGR00990 312 EAARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 45567888876542 1233455677777777778888888888888888888888888877776553 345567888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHH---------HHHHHHHHhh-ccCccc
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT---------RIDGLRRRIL-FSGEVE 152 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~---------~~~~l~rr~~-~~~~~~ 152 (442)
+++...|....+|..... +....++.+++...|++++...+.....++.+-.. .+..+++-+. .+...+
T Consensus 390 ~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQ-LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 888888888888877665 33446778888888888887766543333221111 1111111110 111111
Q ss_pred h---hhhHHHHHHHHHHHHHHHhhhhcCchh----h---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHH
Q 013489 153 G---VLDYSLIRETFQRASDYLSEQMKNTDG----L---LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQS 222 (442)
Q Consensus 153 ~---~~~~~~~r~~~~~a~~~l~~~~~~~~~----~---~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~ 222 (442)
. ...+..-.+.+++|+..+..++...+. . ..++.....+....+ +++.|..++++++..+|++...|..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 0 011111122345555555444432221 1 112222222223346 8999999999999999998889999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHh
Q 013489 223 YISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 223 ~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+.+....|+++.|...|++|+.
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 21
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.9e-10 Score=111.75 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=141.6
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQ-SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~-~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (442)
..||+++...+. +...|+.|..+.- ..+-++++..+|-|++..||...+||..|+.-+..+......+...++++
T Consensus 333 l~~eR~~~E~~~----~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ 408 (881)
T KOG0128|consen 333 LIEERAVAEMVL----DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKD 408 (881)
T ss_pred HHHHHHHHhccc----cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHH
Confidence 356777766554 4678999988764 34567788999999999999999999999977777666666677888888
Q ss_pred HHcCCCcHHHHHHHHHHHHHccCC------HHHHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHH--HHhhccCccchhh
Q 013489 85 TKNCPWVGELWVRSLLSLERSRAS------EEEISTVFEKSLLCAFSTFEEYLDL-FLTRIDGLR--RRILFSGEVEGVL 155 (442)
Q Consensus 85 l~~~p~s~~lW~~y~~~le~~~~~------~~~~~~i~~~al~~~~~~~~~~~~~-~~~~~~~l~--rr~~~~~~~~~~~ 155 (442)
+... ..++..|+.+..+ ..+ .+.++..|..|... ...+... +.+.+.++. +++
T Consensus 409 ls~~---~~l~~~~~~~rr~-~~~~~~s~~~s~lr~~F~~A~~e----Lt~~~~~~~Dt~~~~~q~wA~~---------- 470 (881)
T KOG0128|consen 409 LSMT---VELHNDYLAYRRR-CTNIIDSQDYSSLRAAFNHAWEE----LTELYGDQLDTRTEVLQLWAQV---------- 470 (881)
T ss_pred HHHH---HHHHHHHHHHHHh-hcccchhhhHHHHHHHHHHHHHH----HHHHhhhhhhhHHHHHHHHHHH----------
Confidence 8742 2366666654443 222 35577777776531 0011111 111221110 010
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--chhH-HHHHHHHHHHHHhcc
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLR-LYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAM-LEAWQSYISMEIELD 231 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~-l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--~~~~-~~~w~~~~~~e~~~g 231 (442)
++ .+....+.|+.+....+.-....+. .|+.|+.+|..+| +...||.++.+++.. .|+. ..+...|..||+..|
T Consensus 471 E~-sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g-~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~g 548 (881)
T KOG0128|consen 471 EA-SLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYG-DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYG 548 (881)
T ss_pred HH-HHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhC-CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccc
Confidence 00 1223345565555444433444555 9999999999999 899999999999987 5654 468999999999999
Q ss_pred cHHHHHHHHHHHH
Q 013489 232 HINEARSIYKRCY 244 (442)
Q Consensus 232 ~~~~ar~i~~ral 244 (442)
.++.....-.+-+
T Consensus 549 tl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 549 TLESFDLCPEKVL 561 (881)
T ss_pred cHHHHhhhHHhhc
Confidence 9887766555544
No 22
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4e-12 Score=108.80 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=51.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+..-++||||+|++.++.+.|+.+|.+||.|.+..|+.|+.||+|||||||+|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~ 62 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFR 62 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEee
Confidence 3444568999999999999999999999999999999999999999999999996
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=5.6e-09 Score=108.95 Aligned_cols=93 Identities=9% Similarity=-0.067 Sum_probs=73.0
Q ss_pred hcCChhhHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHH
Q 013489 35 SSGDPGRVQLLYERAITDF---PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE 111 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~---p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~ 111 (442)
..+.++.+..+|++++... |.....|.....+... .++.+.+...|++++...|.....|......+. ..++.++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~-~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~e 383 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL-KGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDK 383 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHH
Confidence 3467889999999999864 6666677776666553 456788999999999999999889988776444 4688899
Q ss_pred HHHHHHHHHhCChhhHHH
Q 013489 112 ISTVFEKSLLCAFSTFEE 129 (442)
Q Consensus 112 ~~~i~~~al~~~~~~~~~ 129 (442)
+...|++++...+.....
T Consensus 384 A~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDI 401 (615)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999877664433
No 24
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.28 E-value=1.7e-11 Score=101.82 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||+|||+++++++|+++|.+||.|.+|.|+.|+.||+++|||||+|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~ 84 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEEC
Confidence 345669999999999999999999999999999999999999999999999996
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.25 E-value=5.5e-10 Score=108.54 Aligned_cols=218 Identities=13% Similarity=0.083 Sum_probs=148.3
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|-..|+.+|...|. ...++-+.+..-..+|.++.++..|+|||...|.-++...+.++-|...+ ...++...|.
T Consensus 270 ~Avs~Y~rAl~lrpn----~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN----HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG-SVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhcCCc----chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-chHHHHHHHH
Confidence 345678888877664 44455555554566899999999999999999999999999888887654 4456889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHH---HHHHHHH----------HHHHHHHHHhhccC
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE---EYLDLFL----------TRIDGLRRRILFSG 149 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~---~~~~~~~----------~~~~~l~rr~~~~~ 149 (442)
+|++.||.-..--.... ...+..+.++.+..+|.+|+...+.-.. ..-.++. .|-..+|-.-.+.+
T Consensus 345 kaL~l~p~hadam~NLg-ni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLG-NIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HHHHhCCccHHHHHHHH-HHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 99999998766545533 3556678889999999999976543111 1111221 12222210000011
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 013489 150 EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (442)
Q Consensus 150 ~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e 227 (442)
....-+..-........|+.++..++.-+|...+.+...+.++...| ++..|..-|+.+|+..|+..+.....+...
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 10000111112234466888888888878888899999999998888 999999999999999988887666555544
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.25 E-value=6.6e-09 Score=112.78 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
++|+.++.......+....+|...+......| +++.|...|++++...|++...|..++.+....|+++.|..+|++++
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444433333334455666666666666 66666666666666666666666666666666666666666666666
Q ss_pred hcccCCCChHHHHHHHHHHHHHhCCHhh
Q 013489 245 SKRFTGTGSEDICHAWLRFEREYGTLED 272 (442)
Q Consensus 245 ~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (442)
.. .++.+ ..+..........|..+.
T Consensus 663 ~~--~~~~~-~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 663 EL--KPDNT-EAQIGLAQLLLAAKRTES 687 (899)
T ss_pred hc--CCCCH-HHHHHHHHHHHHcCCHHH
Confidence 52 12222 333344444444454433
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.22 E-value=1.2e-08 Score=106.55 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=44.6
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
|...+...+...|....++..++.+....| +.+.|...+++++...|++..++..+.......|+++.|...|++++.
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444444444455555555555555 566666666666666666555555555555555666666666666554
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.20 E-value=1.8e-08 Score=112.22 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=172.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------------
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK------------- 69 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~------------- 69 (442)
+|...|+.+|...|. +...+..........|+++.+...|+++|..+|.+...|......+..
T Consensus 369 eA~~~~~~Al~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 369 QAERLYQQARQVDNT----DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 467788999988775 667888888888899999999999999999999999887655443210
Q ss_pred ----------------------------hcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013489 70 ----------------------------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLL 121 (442)
Q Consensus 70 ----------------------------~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~ 121 (442)
..+..+.+...|++|+...|.+..++...+..+. ..++.+++..+|++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 1234566889999999999999888888777454 47889999999999997
Q ss_pred CChhhHHHHH--HHHHH-------HHHHHHHHhhccCccchh----------------hhHHHHHHHHHHHHHHHhhhhc
Q 013489 122 CAFSTFEEYL--DLFLT-------RIDGLRRRILFSGEVEGV----------------LDYSLIRETFQRASDYLSEQMK 176 (442)
Q Consensus 122 ~~~~~~~~~~--~~~~~-------~~~~l~rr~~~~~~~~~~----------------~~~~~~r~~~~~a~~~l~~~~~ 176 (442)
..+......+ .++.. .+..+. ++... .+... .+.-.....++.|+.++..
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~-~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLN-TLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-hCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 6655433222 11111 111111 00000 00000 0000011224556666542
Q ss_pred CchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHH
Q 013489 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDI 256 (442)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i 256 (442)
.+....++...+.+....| +.+.|..+|++++...|++...|+..+.+....|+++.|+.+|++++.. .++.+ .+
T Consensus 599 -~p~~~~~~~~La~~~~~~g-~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~-~~ 673 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRG-DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL-NT 673 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh-HH
Confidence 2334456677788877888 8888888888888888888888888888888888888888888887752 22333 23
Q ss_pred HHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 257 CHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 257 ~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
+......-...|+.+.-..+++++
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333333334466665544444444
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.17 E-value=2.7e-08 Score=108.06 Aligned_cols=259 Identities=13% Similarity=0.069 Sum_probs=160.9
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+...|..++...... +..+.+...|+
T Consensus 483 ~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 557 (899)
T TIGR02917 483 KAREAFEKALSIEPD----FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT-GNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHhhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 567788888877665 6667888888888888999999999999998999888888888776653 45567888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhh-ccCccc
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSGEVE 152 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~-~~~~~~ 152 (442)
+++...|.....|...+..+.. .+..+.+..++++++...+.....+..+-..+ ...+.+-+. ......
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLG-KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 8888888887888777664443 67778888888888765544322222111111 001100000 000000
Q ss_pred hh---hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Q 013489 153 GV---LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (442)
Q Consensus 153 ~~---~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~ 229 (442)
.+ .........+++|..++...+...+.....|...+.+....| +++.|..+++.+....|....+|...+.....
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK-RTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH
Confidence 00 001111123355555555555444555556666777776666 77777777777777777666677777776667
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhh
Q 013489 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (442)
.|+++.|...|++++... + + + ..+......-...|+.+.
T Consensus 716 ~g~~~~A~~~~~~~~~~~-~-~-~-~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRA-P-S-S-QNAIKLHRALLASGNTAE 754 (899)
T ss_pred CCCHHHHHHHHHHHHhhC-C-C-c-hHHHHHHHHHHHCCCHHH
Confidence 777777777777777631 2 1 1 233334444444555443
No 30
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.17 E-value=2.2e-08 Score=94.18 Aligned_cols=266 Identities=20% Similarity=0.248 Sum_probs=172.7
Q ss_pred HHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc
Q 013489 8 LEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (442)
Q Consensus 8 yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~ 87 (442)
..+.|+.+|. +.-.|-..+.+...+|..+..+..||..+..+|..+..|..|+.-.. ..++...+..+|.|++..
T Consensus 31 LRerIkdNPt----nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~EL-A~~df~svE~lf~rCL~k 105 (660)
T COG5107 31 LRERIKDNPT----NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGEL-ARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHhhcCch----hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchh-hhhhHHHHHHHHHHHHhh
Confidence 4456666665 88899999999999999999999999999999999999999997443 234567788999999985
Q ss_pred CCCcHHHHHHHHHHHHHccCCH-----HHHHHHHHHHHhCC-h----hh-HHHHHHHHH-----------HHHHHHHH--
Q 013489 88 CPWVGELWVRSLLSLERSRASE-----EEISTVFEKSLLCA-F----ST-FEEYLDLFL-----------TRIDGLRR-- 143 (442)
Q Consensus 88 ~p~s~~lW~~y~~~le~~~~~~-----~~~~~i~~~al~~~-~----~~-~~~~~~~~~-----------~~~~~l~r-- 143 (442)
.- +.+||..|+.++.+-+... -.+-+.|+-.+.|. + .. |++|..+.. .+++.+|+
T Consensus 106 ~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 SL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred hc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 43 3689999999888755322 23555666555431 1 13 334443221 24555543
Q ss_pred -Hhhc--cCccc-hhhhHHHHHHH----------------HHHHHHHHhh------hhcC-----------ch-hhHHHH
Q 013489 144 -RILF--SGEVE-GVLDYSLIRET----------------FQRASDYLSE------QMKN-----------TD-GLLRLY 185 (442)
Q Consensus 144 -r~~~--~~~~~-~~~~~~~~r~~----------------~~~a~~~l~~------~~~~-----------~~-~~~~l~ 185 (442)
|.+. .++++ -|.|++..... |..|...+.. .+.. .+ ....-|
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 2221 11222 11222221111 1112221111 1100 01 122358
Q ss_pred HHHHHHHHHcC----CCH--HHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 013489 186 AYWAHLEQSMG----KDM--VSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (442)
Q Consensus 186 ~~~a~~e~~~~----~~~--~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~ 259 (442)
+.|+++|...+ +++ .+.-=+|+.++..++-..++|+.|..+....++-++|.....+++. ..| .+...
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~-----~sp-sL~~~ 338 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE-----MSP-SLTMF 338 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc-----CCC-chhee
Confidence 88999987643 222 2344468888888888888999999998888898999988888875 222 36667
Q ss_pred HHHHHHHhCCHhhHHHHHHhhchhHH
Q 013489 260 WLRFEREYGTLEDFDHSVQKVTPRLE 285 (442)
Q Consensus 260 ~~~fE~~~G~~~~~~~~~~~~~~~~~ 285 (442)
+-.+++...+.+.+..|.++|...+.
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 77888888888899999999987664
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.16 E-value=4.8e-08 Score=102.17 Aligned_cols=215 Identities=13% Similarity=0.051 Sum_probs=143.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.|...|+..+...|. +...|...+......|+++.+...|++++..+|.+..+|...+..+.. .+..+.+..+|.
T Consensus 94 ~A~~~l~~~l~~~P~----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~-~g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNVC----QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL-MDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCChHHHHHHHH
Confidence 567889999988876 777898888888889999999999999999999999999999887664 455677889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+++...|.+...|...+. +. ..++.+++..++++++...+........ .. ...+. .. .++
T Consensus 169 ~~~~~~P~~~~a~~~~~~-l~-~~g~~~eA~~~~~~~l~~~~~~~~~~~~-~l--~~~l~-~~---------g~~----- 228 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLS-FL-NKSRLPEDHDLARALLPFFALERQESAG-LA--VDTLC-AV---------GKY----- 228 (656)
T ss_pred HHHHhCCCCHHHHHHHHH-HH-HcCCHHHHHHHHHHHHhcCCCcchhHHH-HH--HHHHH-HC---------CCH-----
Confidence 999988988887765433 33 3577888888888887654321111110 00 00000 00 112
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS----ARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~----ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~ 238 (442)
+.|+..+..++...+....++..++.+....| +.+. |...|++++..+|++..+|..++.+....|+++.|..
T Consensus 229 --~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 229 --QEAIQTGESALARGLDGAALRRSLGLAYYQSG-RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 22222222222223334455666666666666 4543 6677777777777666677777777666677777777
Q ss_pred HHHHHHh
Q 013489 239 IYKRCYS 245 (442)
Q Consensus 239 i~~ral~ 245 (442)
.|++++.
T Consensus 306 ~l~~al~ 312 (656)
T PRK15174 306 LLQQSLA 312 (656)
T ss_pred HHHHHHH
Confidence 7777665
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.7e-11 Score=100.54 Aligned_cols=55 Identities=25% Similarity=0.401 Sum_probs=51.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++..|||||||+..|+.||-.+|++||.|++|.+++|+.||+|+||||+.|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYE 85 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYE 85 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEec
Confidence 3456669999999999999999999999999999999999999999999999874
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.3e-10 Score=102.72 Aligned_cols=53 Identities=32% Similarity=0.438 Sum_probs=50.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..-+||||+-|++++++..|+..|+.||+|..|+||.|+.||+++|||||+|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye 151 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYE 151 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEec
Confidence 44569999999999999999999999999999999999999999999999995
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.10 E-value=2.2e-07 Score=91.34 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=70.1
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-EAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~-~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
+.|..++...+...+.....+...+.+....| +++.|.++|++++...|+.. .+|...+......|+++.|...++++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQG-DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444443333444556677777777777 88888888888888777654 46667777777788888888888888
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
+.. .++ +. ++......-...|..+.....++
T Consensus 276 ~~~--~p~-~~-~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 276 LEE--YPG-AD-LLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHh--CCC-ch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 763 222 22 33555666666676655444443
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=3e-08 Score=85.91 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=144.9
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHH
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~ 113 (442)
...||+..+..-+|.||...|.+...|.--+.+... .+.++.+.+-|++|+..-|..+.+-..|--||.. ++..+++.
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~ 123 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-LGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAM 123 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHH
Confidence 348999999999999999999999999999887764 4567889999999999999999999999998887 46888899
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHH
Q 013489 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (442)
Q Consensus 114 ~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (442)
.-|++|+.-+.- . .....|....-.-.
T Consensus 124 q~F~~Al~~P~Y-----~------------------------------------------------~~s~t~eN~G~Cal 150 (250)
T COG3063 124 QQFERALADPAY-----G------------------------------------------------EPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHhCCCC-----C------------------------------------------------CcchhhhhhHHHHh
Confidence 999998864321 0 00011111122224
Q ss_pred HcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhH
Q 013489 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~ 273 (442)
+.| +.+.|+.+|.++|..+|+....-++.++.+..-|++-.||..+++-.++ .. ...+.||.. +++++..|+.+..
T Consensus 151 ~~g-q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~-~~-~~A~sL~L~-iriak~~gd~~~a 226 (250)
T COG3063 151 KAG-QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR-GG-AQAESLLLG-IRIAKRLGDRAAA 226 (250)
T ss_pred hcC-CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc-cc-ccHHHHHHH-HHHHHHhccHHHH
Confidence 567 8999999999999999999999999999999999999999999998774 23 445667755 7999999996543
No 36
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.2e-10 Score=89.92 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=49.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||||||++-++++.|.++|+.||.|..|-+-.|+.+..+.|||||+|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy 86 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYY 86 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEe
Confidence 44679999999999999999999999999999999999999999999999983
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.08 E-value=1.4e-09 Score=101.92 Aligned_cols=248 Identities=14% Similarity=0.089 Sum_probs=71.4
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
|...+...+.... ++.+...|..++......++++.+...|++.+...+.++.....++.++ ..++++.+..++++
T Consensus 27 Al~~L~~~~~~~~--~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~--~~~~~~~A~~~~~~ 102 (280)
T PF13429_consen 27 ALEVLKKAAQKIA--PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLL--QDGDPEEALKLAEK 102 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence 3444544444431 1235667888887777778888888888888877777777777777763 23445566677777
Q ss_pred HHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHH
Q 013489 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (442)
+.+..+ +...|..++..+. ..+..+.+..+++++....... .-..+|..+..+.. +. ++.......
T Consensus 103 ~~~~~~-~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~-~~---------G~~~~A~~~ 168 (280)
T PF13429_consen 103 AYERDG-DPRYLLSALQLYY-RLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYE-QL---------GDPDKALRD 168 (280)
T ss_dssp ----------------H-HH-HTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHH-HC---------CHHHHHHHH
T ss_pred cccccc-ccchhhHHHHHHH-HHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHH-Hc---------CCHHHHHHH
Confidence 766543 3456666665443 3566677777777765432110 01111111111111 11 222233334
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
|++|+.. .|....++..++.+....| +.+.++.++.......|++..+|..++......|+.+.|..+|+++
T Consensus 169 ~~~al~~-------~P~~~~~~~~l~~~li~~~-~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 169 YRKALEL-------DPDDPDARNALAWLLIDMG-DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHH--------TT-HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHc-------CCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 4444332 3444455656665555566 6677777777776666666667777777777777777777777777
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
+.. .+++| .+...|...-...|..+.-..+..+.
T Consensus 241 ~~~--~p~d~-~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKL--NPDDP-LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHH--STT-H-HHHHHHHHHHT---------------
T ss_pred ccc--ccccc-cccccccccccccccccccccccccc
Confidence 752 33344 35556666666666665544444443
No 38
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.6e-10 Score=96.64 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=52.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+.++|-|.||+.++++++|+++|.+||.|.+|.|.+|+.||.+||||||.|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~ 239 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFE 239 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEe
Confidence 3457889999999999999999999999999999999999999999999999995
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.1e-07 Score=87.80 Aligned_cols=212 Identities=17% Similarity=0.191 Sum_probs=143.3
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
..|...|...+..+......|..........|+...+...|+++|..+|.++..|......+.. .++.+.+...|++|+
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al 125 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3455566544432333466788888777888999999999999999999999999999887664 456678999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHH
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~ 165 (442)
...|.....|......+. ..+..+++...|++++...+... +..+|..... .. .+ ++
T Consensus 126 ~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~---~~----------~~-------~~ 182 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDP--YRALWLYLAE---SK----------LD-------PK 182 (296)
T ss_pred HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH---cc----------CC-------HH
Confidence 999999999988766444 46889999999999998776643 2223321110 00 12 23
Q ss_pred HHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------HhchhHHHHHHHHHHHHHhcccHHHHHH
Q 013489 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL-------KISGAMLEAWQSYISMEIELDHINEARS 238 (442)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l-------~~~~~~~~~w~~~~~~e~~~g~~~~ar~ 238 (442)
+|+..+.......++. .|. +.......| +...+ +.++.++ ...|+..+.|..........|+++.|+.
T Consensus 183 ~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg-~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEKLDKE--QWG-WNIVEFYLG-KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhhCCcc--ccH-HHHHHHHcc-CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333332222111111 232 333334455 44333 2444444 3456667899999999999999999999
Q ss_pred HHHHHHhc
Q 013489 239 IYKRCYSK 246 (442)
Q Consensus 239 i~~ral~~ 246 (442)
.|++|+..
T Consensus 258 ~~~~Al~~ 265 (296)
T PRK11189 258 LFKLALAN 265 (296)
T ss_pred HHHHHHHh
Confidence 99999973
No 40
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.06 E-value=5.2e-10 Score=108.58 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+|||+|||+.+++++|+++|++||.|.+|+|+.|+.||++||||||+|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 44558999999999999999999999999999999999889999999999995
No 41
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.04 E-value=1.9e-08 Score=95.71 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=90.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC------------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD------------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~------------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~ 70 (442)
++...|++.|+.+|. +.+.|+.|+.+....-. .++-+.+|||||..+|.++.||+.|+....+.
T Consensus 3 ~r~~el~~~v~~~P~----di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 3 KRTAELNRRVRENPH----DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred hHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 456788999999887 89999999998764421 23557889999999999999999999977754
Q ss_pred cchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC--CHHHHHHHHHHHHh
Q 013489 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRA--SEEEISTVFEKSLL 121 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~--~~~~~~~i~~~al~ 121 (442)
. +.+.+...+++++...|.+..||..||.+...... ..+.++.+|.+||.
T Consensus 79 ~-~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 79 W-DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred C-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 4 55678889999999999999999999987765322 35667777777664
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.04 E-value=2.1e-07 Score=103.90 Aligned_cols=239 Identities=11% Similarity=0.016 Sum_probs=139.0
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH--HHHHHHHH-----------HHHh
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD--LWLDYTQY-----------LDKT 70 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~--lW~~Y~~~-----------l~~~ 70 (442)
|...|+.+|...|. +...|..........|+++.++.+|++++..+|.+.. .|..++.. ....
T Consensus 288 A~~~l~~aL~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 288 AIPELQQAVRANPK----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45566666666554 4556666666666677777777777777776665442 34322210 0011
Q ss_pred cchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCc
Q 013489 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGE 150 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~ 150 (442)
.+..+.+...|++++...|.....|...... ....++.+++...|++++...+.....+..+...+.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~-~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~------------ 430 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDV-AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR------------ 430 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------
Confidence 2344557777777777777666666655443 333566677777777777655543322221111110
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhcCch---------hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHH
Q 013489 151 VEGVLDYSLIRETFQRASDYLSEQMKNTD---------GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQ 221 (442)
Q Consensus 151 ~~~~~~~~~~r~~~~~a~~~l~~~~~~~~---------~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~ 221 (442)
....++|+.++........ -....+...+......| +.+.|..+|++++..+|++..++.
T Consensus 431 ----------~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g-~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 431 ----------QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG-KWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred ----------hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 0011223332221110000 00123445666667777 899999999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhH
Q 013489 222 SYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDF 273 (442)
Q Consensus 222 ~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~ 273 (442)
..+.+....|+++.|..+|++++.. .++.++..+ ....+....|..+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~-a~al~l~~~~~~~~A 548 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVY-AYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHhCCCHHHH
Confidence 9999999999999999999999863 344554333 333444445554443
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=1.7e-07 Score=84.35 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~l 102 (442)
...+...+......|+++.+...|++++...|.+...|...+..... .++.+.+...|++++...|....+|..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ-LGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45677777777889999999999999999999999999988776664 35667899999999999999888888877644
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 013489 103 ERSRASEEEISTVFEKSLLC 122 (442)
Q Consensus 103 e~~~~~~~~~~~i~~~al~~ 122 (442)
. ..+..+.+...|++++..
T Consensus 110 ~-~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 110 C-QQGKYEQAMQQFEQAIED 128 (234)
T ss_pred H-HcccHHHHHHHHHHHHhc
Confidence 4 467788888888887753
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.03 E-value=5.8e-10 Score=106.17 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.|+.||+++|||||+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~ 157 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFG 157 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEc
Confidence 4456789999999999999999999999999999999999999999999999995
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=1.5e-07 Score=96.80 Aligned_cols=213 Identities=9% Similarity=-0.102 Sum_probs=144.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHH---------hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQ---------SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV 73 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~---------~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~ 73 (442)
+|...|+.+|...|. +...|...+.... ..++.+.+...++++|..+|.+...|..+...+.. .++
T Consensus 279 ~A~~~~~~Al~ldP~----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~ 353 (553)
T PRK12370 279 QALKLLTQCVNMSPN----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSE 353 (553)
T ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccC
Confidence 567788888888775 4545544433221 12347889999999999999999999988776554 345
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccch
Q 013489 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEG 153 (442)
Q Consensus 74 ~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~ 153 (442)
.+.+...|++|+...|.+...|..+...+. ..+..+++...|++++...|.....+......+ +.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~--~~------------ 418 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWIT--YY------------ 418 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH--Hh------------
Confidence 677999999999999999999888776554 468889999999999988776432211111000 00
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Q 013489 154 VLDYSLIRETFQRASDYLSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (442)
Q Consensus 154 ~~~~~~~r~~~~~a~~~l~~~~~~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~ 232 (442)
...+++|+..+...+... +.....+...+.+....| +.+.|+..+.+++...|.....+...+......|+
T Consensus 419 -------~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G-~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 419 -------HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG-KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred -------ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC-CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 012344444444433222 333445666777777788 89999999999888888877777666666555563
Q ss_pred HHHHHHHHHHHHh
Q 013489 233 INEARSIYKRCYS 245 (442)
Q Consensus 233 ~~~ar~i~~ral~ 245 (442)
.+...+++.+.
T Consensus 491 --~a~~~l~~ll~ 501 (553)
T PRK12370 491 --RALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHH
Confidence 67776766554
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.99 E-value=3.6e-09 Score=99.22 Aligned_cols=226 Identities=16% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDF--PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~--p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~l 102 (442)
..+.++......|+++.+..++.+.+... |.++.+|..++.... ..++.+.+..+|++.+..-+.+......++..+
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQLL 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 44577888888999999999998877664 899999999988665 345667799999999998777777777777642
Q ss_pred HHccCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchh
Q 013489 103 ERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (442)
Q Consensus 103 e~~~~~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~ 180 (442)
..++.+.+..+++++....... +..++.++. + ..++..+...++++... ...+.
T Consensus 89 --~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~--------~---------~~~~~~~~~~l~~~~~~-----~~~~~ 144 (280)
T PF13429_consen 89 --QDGDPEEALKLAEKAYERDGDPRYLLSALQLYY--------R---------LGDYDEAEELLEKLEEL-----PAAPD 144 (280)
T ss_dssp -------------------------------H-HH--------H---------TT-HHHHHHHHHHHHH------T---T
T ss_pred --ccccccccccccccccccccccchhhHHHHHHH--------H---------HhHHHHHHHHHHHHHhc-----cCCCC
Confidence 3566677777777776543221 111222211 0 13444555555554421 11345
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~ 260 (442)
...+|..++.++...| +.+.|..+|++++..+|++..++..++.+....|+.+.++.+++...... .+.| .+|..+
T Consensus 145 ~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~-~~~~~l 220 (280)
T PF13429_consen 145 SARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP-DLWDAL 220 (280)
T ss_dssp -HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC-CHCHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH-HHHHHH
Confidence 5679999999999999 99999999999999999999999999999999999999999998877632 2233 466666
Q ss_pred HHHHHHhCCHhhHHHHHHh
Q 013489 261 LRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 261 ~~fE~~~G~~~~~~~~~~~ 279 (442)
.......|+.+.-...+++
T Consensus 221 a~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHhccccccccccccccc
Confidence 6666666776544444443
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.99 E-value=4.3e-07 Score=89.33 Aligned_cols=236 Identities=10% Similarity=0.031 Sum_probs=149.3
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcchhhHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS----SDLWLDYTQYLDKTLKVGNVVR 78 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~----~~lW~~Y~~~l~~~~~~~~~~~ 78 (442)
+|...|+.++...|. +...|...+......|+++.+..+|++++...+.. ...|...+..+.. .++.+.+.
T Consensus 53 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~ 127 (389)
T PRK11788 53 KAIDLFIEMLKVDPE----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK-AGLLDRAE 127 (389)
T ss_pred HHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-CCCHHHHH
Confidence 456778888877664 67778888888888888888888888888753332 2345555554443 34567788
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHH-----HHHHHHHH---------HHHHHHHH
Q 013489 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE-----EYLDLFLT---------RIDGLRRR 144 (442)
Q Consensus 79 ~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~-----~~~~~~~~---------~~~~l~rr 144 (442)
.+|++++...|.....+..++..+. ..++.+++..+|++++...+.... .+..+-.. ....+.+-
T Consensus 128 ~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888877777777777666444 357777888888887765432111 11111000 11111111
Q ss_pred hh-ccCccchh---hhHHHHHHHHHHHHHHHhhhhcCchhh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHH
Q 013489 145 IL-FSGEVEGV---LDYSLIRETFQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (442)
Q Consensus 145 ~~-~~~~~~~~---~~~~~~r~~~~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~ 219 (442)
+. .......+ ..+......+++|..++.......+.. ..++...+..+...| +++.|..++++++...|+.. +
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~p~~~-~ 284 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG-DEAEGLEFLRRALEEYPGAD-L 284 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCch-H
Confidence 00 01111100 011111233566777776665433332 345666777778888 99999999999999988764 4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 220 WQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 220 w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
....+.+....|+++.|..+|++++..
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 478888888999999999999999973
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.97 E-value=7.9e-10 Score=80.06 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=45.1
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 394 v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
|||+|||.++++++|+++|++||.|..+.++.+ .+|+++|||||+|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~ 47 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFE 47 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEES
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEc
Confidence 799999999999999999999999999999998 78999999999996
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.97 E-value=4.5e-07 Score=97.79 Aligned_cols=218 Identities=11% Similarity=0.016 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+...|..+...... +.+..+...|.+++...|.+.. .+..+..+. ..+..+.+...|++++..-|. ...|......
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~-~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAY-QVEDYATALAAWQKISLHDMS-NEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHH-HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 44566666655554 5555666666666666665322 221122111 233445566666666554333 2334444433
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhhccCccchhhh---HHHHHHHHHHHHH
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRILFSGEVEGVLD---YSLIRETFQRASD 169 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~~~~~~~~~~~---~~~~r~~~~~a~~ 169 (442)
+.. .++.+.+...|++++...+.....+..+.... +..+++-+......+.+.. +..-...++.|+.
T Consensus 552 ll~-~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 552 AQA-AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHH-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 332 45666666666666655443322222111000 0000000000000000000 0000112233444
Q ss_pred HHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
++..++...|....++..++.+....| +.+.|..+|++++..+|++..+|...+......|+++.|...|++++.
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444444334444455555665555555 566666666666666666666666666666666666666666666664
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.95 E-value=2e-06 Score=91.86 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=78.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|...+......|+++.++.++++++...|.+.. |...+..+.. .+..+.+...|+
T Consensus 67 ~A~~~~~~al~~~P~----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l~ 140 (765)
T PRK10049 67 NSLTLWQKALSLEPQ----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHHH
Confidence 466778888877775 6677888888888889999999999999999999999 8888776654 456677999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~ 104 (442)
+++...|....+|..++..+..
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999888888775543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2.1e-09 Score=102.52 Aligned_cols=57 Identities=30% Similarity=0.407 Sum_probs=52.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++..+...+|||.|||++++++.|..+|++||.|..+.|+.++.||.++|.|||.|.
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fk 342 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFK 342 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEec
Confidence 444566789999999999999999999999999999999999999999999999995
No 52
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.92 E-value=1.9e-09 Score=108.44 Aligned_cols=52 Identities=25% Similarity=0.412 Sum_probs=49.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||||||+.+++++|+.+|..||.|.+|+|+.|+.||+++|||||+|.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~ 157 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYE 157 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeC
Confidence 4579999999999999999999999999999999999999999999999996
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.90 E-value=2.9e-09 Score=77.13 Aligned_cols=47 Identities=36% Similarity=0.574 Sum_probs=42.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 394 v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
|||+|||+++++++|+.+|+.+|.|..+++..++. |+++|+|||+|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~ 47 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFS 47 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEES
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeC
Confidence 79999999999999999999999999999999865 999999999995
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.90 E-value=3.7e-07 Score=98.45 Aligned_cols=197 Identities=9% Similarity=-0.034 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
.|..++......|+++.+..+|++++...|.+..+.......+. ..++.+.+...|++|+...|. ...|......+.+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 35555555555666666666666666666665554443222111 123445566667777766664 5666665553333
Q ss_pred ccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHH
Q 013489 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l 184 (442)
.+..+++...|++++...|.....+..+-..+. ....++.|+.++..++...|....+
T Consensus 622 -lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~---------------------~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 622 -RHNVPAAVSDLRAALELEPNNSNYQAALGYALW---------------------DSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred -CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 566666666677766665554332221111110 0123455555555555556667788
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+...+......| +++.|...|++++...|++..+-..+..++....++.++.+.|.|+...
T Consensus 680 ~~nLA~al~~lG-d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 680 IRQLAYVNQRLD-DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999 9999999999999999999999999999999999999999999999863
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=5e-07 Score=85.23 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=138.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.++..|+.+|...|. +...|..........|+++.+...|+++|..+|.+...|...+..+.. .+..+.+...|+
T Consensus 82 ~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~~ 156 (296)
T PRK11189 82 LARNDFSQALALRPD----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 467789999988876 778999999999999999999999999999999999999998876654 456678999999
Q ss_pred HHHHcCCCcH--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHH
Q 013489 83 RATKNCPWVG--ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (442)
Q Consensus 83 rAl~~~p~s~--~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (442)
+++...|... .+|... .+ ..+..+++...|.+++....+..+.. .+. .+ ++ .++..
T Consensus 157 ~al~~~P~~~~~~~~~~l---~~-~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~-~l-------------g~~~~- 214 (296)
T PRK11189 157 AFYQDDPNDPYRALWLYL---AE-SKLDPKQAKENLKQRYEKLDKEQWGW-NIV--EF-YL-------------GKISE- 214 (296)
T ss_pred HHHHhCCCCHHHHHHHHH---HH-ccCCHHHHHHHHHHHHhhCCccccHH-HHH--HH-Hc-------------cCCCH-
Confidence 9999999876 344421 22 34667888888877664322211111 000 00 00 00000
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHhcc
Q 013489 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELD 231 (442)
Q Consensus 161 r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~-~~~~~w~~~~~~e~~~g 231 (442)
...+..+...+.......+.....|.+.+.+....| +++.|+..|++++..+| +.++.-...++++...+
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g-~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 215 ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG-DLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 123333333322222223445678999999999999 99999999999999975 76776666666665543
No 56
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=5.3e-09 Score=97.58 Aligned_cols=53 Identities=21% Similarity=0.467 Sum_probs=50.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...|.||||.||.++.+++|..+|...|.|-++|||+|+.+|.+||||||+|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~ 133 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFC 133 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEee
Confidence 45689999999999999999999999999999999999999999999999996
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.85 E-value=5.8e-09 Score=104.73 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=48.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|+.||.|.+|+|++| .+|++||||||+|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~ 107 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFC 107 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeC
Confidence 4589999999999999999999999999999999999 89999999999996
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=5.6e-07 Score=78.12 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=100.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.|+..+|.+|...|. .+..|...+.+-...|..+.+..-|++||...|.+.++-.+|.-||-..+ .++.+..-|+
T Consensus 53 ~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg-~~~eA~q~F~ 127 (250)
T COG3063 53 QAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG-RPEEAMQQFE 127 (250)
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC-ChHHHHHHHH
Confidence 578899999999886 78899999999999999999999999999999999999999999999766 6788999999
Q ss_pred HHHH--cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 83 RATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 83 rAl~--~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
+|+. ..|.....|...- .+-...+..+.++..|+|+|...+.
T Consensus 128 ~Al~~P~Y~~~s~t~eN~G-~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 128 RALADPAYGEPSDTLENLG-LCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHhCCCCCCcchhhhhhH-HHHhhcCCchhHHHHHHHHHHhCcC
Confidence 9998 5566667777743 3555568888999999999976554
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=98.82 E-value=2.4e-06 Score=87.90 Aligned_cols=203 Identities=10% Similarity=-0.079 Sum_probs=138.2
Q ss_pred hHhHHHHHHHHHHHH--hc---CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH--h------cchhhHHHHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQ--SS---GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK--T------LKVGNVVRDVYSRATK 86 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~--~~---g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~--~------~~~~~~~~~v~erAl~ 86 (442)
+++++.|..|+.-.. .. ++.+.+..+|++|+..+|.+...|...+..... . .+....+...+++|+.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 346777777766431 11 245789999999999999999888655432211 1 1234678999999999
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHH
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~ 166 (442)
.-|.....|..+...+. ..++.+++...|++|+...|.....+..+-..+. ..+.+++
T Consensus 333 ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~e 390 (553)
T PRK12370 333 LDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEE 390 (553)
T ss_pred cCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHH
Confidence 99999999988766444 4678899999999999988775544332221110 0122344
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
|+..+..++...|.....+...+......| +++.|...+++++.. .|+.+..+.....+....|+++.|+..+.+.+.
T Consensus 391 Ai~~~~~Al~l~P~~~~~~~~~~~~~~~~g-~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 391 ALQTINECLKLDPTRAAAGITKLWITYYHT-GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 444444444333333222222333344567 799999999999988 477777888888888889999999999998765
No 60
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.82 E-value=7.8e-09 Score=104.00 Aligned_cols=52 Identities=8% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|+.||.|.+|+|+.|+.+|++||||||+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe 254 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYN 254 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEEC
Confidence 3469999999999999999999999999999999999889999999999995
No 61
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.81 E-value=7.6e-09 Score=98.58 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=48.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||..+++++|+++|+.||.|..|+|+.|+.+|+++|||||+|.
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 458999999999999999999999999999999999889999999999995
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.2e-08 Score=91.68 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=45.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|+|+||||...+.||+.+|.+||.|.+|.|+.+ +.| |||||||+|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFVTme 144 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFVTME 144 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceEEec
Confidence 44569999999999999999999999999999999997 444 7999999984
No 63
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.78 E-value=1.2e-08 Score=102.73 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=51.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+.++|||+|||..+++.+|+.+|+.||.|.+|+|+.|+.+|+++|||||+|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~ 139 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFY 139 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEC
Confidence 3455779999999999999999999999999999999999999999999999995
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.76 E-value=8.6e-09 Score=84.99 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=50.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+...|||||||+..++++-|.++|-++|+|.++++++|+.++.++|||||+|-
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~ 59 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFR 59 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEe
Confidence 44569999999999999999999999999999999999999999999999994
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.74 E-value=3.2e-05 Score=82.77 Aligned_cols=232 Identities=11% Similarity=0.028 Sum_probs=149.7
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
+...|+..+...|. ....|...+......|++..+..+|+++|...|.++.+|...+..+... +..+.+...+++
T Consensus 34 A~~~~~~~~~~~~~----~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~-g~~~eA~~~l~~ 108 (765)
T PRK10049 34 VITVYNRYRVHMQL----PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA-GQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 34556666653333 4557888998889999999999999999999999999999888876644 456779999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhhcc-C---c
Q 013489 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRILFS-G---E 150 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~~~-~---~ 150 (442)
++...|.... |......+. ..+..+.+...|++++...|......+.+-... +..+. ++... . .
T Consensus 109 ~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~-~~~~~p~~~~~ 185 (765)
T PRK10049 109 LVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID-DANLTPAEKRD 185 (765)
T ss_pred HHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH-hCCCCHHHHHH
Confidence 9999999999 888776555 468889999999999988776544332211111 00111 00000 0 0
Q ss_pred cchhhhHHHHH-------------HHHHHHHHHHhhhhc---Cchh----hHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 151 VEGVLDYSLIR-------------ETFQRASDYLSEQMK---NTDG----LLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 151 ~~~~~~~~~~r-------------~~~~~a~~~l~~~~~---~~~~----~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
.+.......++ ...++|+..+...+. ..+. .........-.....+ +++.|+..|++++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g-~~~eA~~~~~~ll 264 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD-RYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhh
Confidence 00000001111 111445554443332 1111 1111111111224456 8999999999999
Q ss_pred Hhc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 211 KIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 211 ~~~---~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
... |.....|+ +......|++++|..+|++++..
T Consensus 265 ~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 265 AEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred ccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhc
Confidence 874 66677775 66777789999999999998863
No 66
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.6e-08 Score=88.43 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=49.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...||||.|...++.++|++.|.+||.|.+++|++|..|+|+||||||.|-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~ 112 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFP 112 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEecc
Confidence 568999999999999999999999999999999999999999999999984
No 67
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.72 E-value=4.5e-08 Score=88.00 Aligned_cols=135 Identities=22% Similarity=0.370 Sum_probs=107.7
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc-------------C---------ChhhHHHHHHHHHhcCCCCHHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-------------G---------DPGRVQLLYERAITDFPVSSDL 59 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~-------------g---------~~~~~~~lyERal~~~p~~~~l 59 (442)
.+.|..||..|.+... .+.-++.||.+|-.. | -|.++..+|.|+...+|.++.+
T Consensus 34 vktRr~fE~rL~rr~~----klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~ 109 (435)
T COG5191 34 VKTRRKFELRLQRREK----KLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKI 109 (435)
T ss_pred HHHHHHHHHHHhcccc----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHH
Confidence 4679999999988765 677899999987532 1 1345566789999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh---hHHHHHHHHHH
Q 013489 60 WLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS---TFEEYLDLFLT 136 (442)
Q Consensus 60 W~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~---~~~~~~~~~~~ 136 (442)
|.+|+.|+.+.. ....+-.||..+++..|...+||.....+....+++++..|.+|.+++.+.+. .|.+|+.+.+.
T Consensus 110 w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 110 WSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 999999998654 44568899999999999999999986655555578999999999999987665 35567777776
Q ss_pred HHHHH
Q 013489 137 RIDGL 141 (442)
Q Consensus 137 ~~~~l 141 (442)
++.-|
T Consensus 189 yiTKL 193 (435)
T COG5191 189 YITKL 193 (435)
T ss_pred HHHHH
Confidence 66544
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.4e-06 Score=80.65 Aligned_cols=218 Identities=14% Similarity=0.155 Sum_probs=155.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHH
Q 013489 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~ 114 (442)
-.|+...++..|..+|..+|..+.+++.-...+. ..++.+.....|..|.+..|..+.+|..... +..-.+.++++-.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~-d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ-m~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA-DENQSEKMWKDFNKAEDLDPENPDVYYHRGQ-MRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh-hhhccHHHHHHHHHHHhcCCCCCchhHhHHH-HHHHHHHHHHHHH
Confidence 3578888999999999999999998665554333 3345677889999999999999888887765 2222466788999
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHH
Q 013489 115 VFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS 194 (442)
Q Consensus 115 i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~ 194 (442)
-|++|+...+.++-.|+.+.... | |. ..+......|++++. ..|.+++++.+++++...
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~--Y---r~---------~k~~~~m~~Fee~kk-------kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCAL--Y---RQ---------HKIAESMKTFEEAKK-------KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHH--H---HH---------HHHHHHHHHHHHHHH-------hCCCCchHHHHHHHHHhh
Confidence 99999999888766666543211 1 11 123344456666655 457778899999999999
Q ss_pred cCCCHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHh-cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013489 195 MGKDMVSARGVWERLLKISGA------MLEAWQSYISMEIE-LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (442)
Q Consensus 195 ~~~~~~~ar~i~~~~l~~~~~------~~~~w~~~~~~e~~-~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (442)
.+ +++.|.+.|..++...|. +.-..+.=+-+..+ .+++..|..++.+|+. ++ +..+.-+....+||-..
T Consensus 475 qq-qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~D-pkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 475 QQ-QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LD-PKCEQAYETLAQFELQR 550 (606)
T ss_pred HH-hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cC-chHHHHHHHHHHHHHHH
Confidence 99 999999999999999776 33222222222222 2799999999999997 33 34566777888999998
Q ss_pred CCHhhHHHHHHh
Q 013489 268 GTLEDFDHSVQK 279 (442)
Q Consensus 268 G~~~~~~~~~~~ 279 (442)
|+++.--+.+++
T Consensus 551 ~~i~eAielFEk 562 (606)
T KOG0547|consen 551 GKIDEAIELFEK 562 (606)
T ss_pred hhHHHHHHHHHH
Confidence 987654334433
No 69
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.2e-09 Score=87.38 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=51.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEeeC
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYTL 442 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~ 442 (442)
...+++|||+|..++++.-|...|-+||.|.+|.++.|-.++++||||||+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~ 61 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEE 61 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeec
Confidence 556799999999999999999999999999999999999999999999999964
No 70
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.5e-08 Score=92.78 Aligned_cols=54 Identities=30% Similarity=0.382 Sum_probs=51.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.+..++|||.+|..++|.||+.+|.+||.|.+|.|++|+.||.++|+|||.|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~ 84 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYY 84 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEec
Confidence 456679999999999999999999999999999999999999999999999985
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.9e-06 Score=81.07 Aligned_cols=221 Identities=13% Similarity=0.119 Sum_probs=148.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.+...|..+|.-.|. ..+.|+..........+.......|..|...+|.+++++.+-.+...- ....+.+..=|+
T Consensus 344 ~a~~d~~~~I~l~~~----~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e~A~aDF~ 418 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPA----FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYEEAIADFQ 418 (606)
T ss_pred hhhhhHHHHHhcCcc----cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHHHHHHHHH
Confidence 345667777766654 333355555555566778888999999999999999999988765442 345577899999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+|++.-|.+.--++.....+++ ...+++....|+.+...-|. -.+.+.+| .+.|- +-.++...-.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~-~~Evy~~f---AeiLt----------DqqqFd~A~k 483 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPN-CPEVYNLF---AEILT----------DQQQFDKAVK 483 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCC-CchHHHHH---HHHHh----------hHHhHHHHHH
Confidence 9999999887777776665665 45788999999998853222 11222222 11111 1134444445
Q ss_pred HHHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 163 TFQRASDYLSEQMKNT-DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~-~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
.|+.|+.+-....... ..-.-++...+.+-.+ + ++..|.+++.++++.+|..-......++|+...|++++|..+|+
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~-d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E-DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchh-h-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555321100000 0111122223323233 4 89999999999999999988899999999999999999999999
Q ss_pred HHHh
Q 013489 242 RCYS 245 (442)
Q Consensus 242 ral~ 245 (442)
+++.
T Consensus 562 ksa~ 565 (606)
T KOG0547|consen 562 KSAQ 565 (606)
T ss_pred HHHH
Confidence 9985
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.1e-06 Score=83.64 Aligned_cols=237 Identities=12% Similarity=0.081 Sum_probs=155.4
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHH
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~ 113 (442)
++.|++..+..+||-|+..+|.+.+.|.....--.... ....+...+.||+..-|....+-...+- .....+....+-
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE-~E~~ai~AL~rcl~LdP~NleaLmaLAV-SytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENE-NEQNAISALRRCLELDPTNLEALMALAV-SYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhcc-chHHHHHHHHHHHhcCCccHHHHHHHHH-HHhhhhhHHHHH
Confidence 34677888888888888888888888887654333222 2234777888888888877655444332 222233334566
Q ss_pred HHHHHHHhCChh--------------------hHHHHHHHHHHHHHHHHHHhhccCccchhhhH-------HHHHHHHHH
Q 013489 114 TVFEKSLLCAFS--------------------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY-------SLIRETFQR 166 (442)
Q Consensus 114 ~i~~~al~~~~~--------------------~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~-------~~~r~~~~~ 166 (442)
..+.+.+...|. ....+..+-..+++..+ .... ..+ -|+ -.+-.-|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~--~~~~-~~D--pdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR--QLPT-KID--PDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH--hCCC-CCC--hhHHhhhHHHHhcchHHHH
Confidence 666666543221 11112222222222221 1111 011 111 124467899
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
|++++..++...|..+.+|..+.-....-. ....|.+.|.+|++..|..+.+|....--.+..|.+..|.+.|=.||.-
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999888889999999987766544 7889999999999999999999999999999999999999999999853
Q ss_pred ccC----CCC---hHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 247 RFT----GTG---SEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 247 ~~~----~~~---~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.-. .+. .+.||.....+-...|..+.+..+..
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 111 112 25799888877777787775554443
No 73
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.68 E-value=4.5e-06 Score=79.51 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHH
Q 013489 44 LLYERAITDFPVSSDLWLDYTQYLDKTLK-----------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (442)
Q Consensus 44 ~lyERal~~~p~~~~lW~~Y~~~l~~~~~-----------~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~ 112 (442)
.-|+|.|..+|.+.+.|+.|+.|-..... ..+.-..||+||+++.|.+..||..|+..... ..+.+.+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence 45899999999999999999998775432 12346689999999999999999999996665 4577888
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHH
Q 013489 113 STVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (442)
Q Consensus 113 ~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (442)
...+++++...+. ...+|..|+++...++.. -.+..++.+|.+|+..+....... .
T Consensus 85 ~~~we~~l~~~~~----~~~LW~~yL~~~q~~~~~-------f~v~~~~~~y~~~l~~L~~~~~~~-------------~ 140 (321)
T PF08424_consen 85 AKKWEELLFKNPG----SPELWREYLDFRQSNFAS-------FTVSDVRDVYEKCLRALSRRRSGR-------------M 140 (321)
T ss_pred HHHHHHHHHHCCC----ChHHHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHHhhccc-------------c
Confidence 9999998876443 346777777666544321 246677888888888764332110 0
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR 247 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~ 247 (442)
.... +.. ......+.+.+.++.|++..|..++|..+++-.+.-+
T Consensus 141 ~~~~-~~~----------~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 141 TSHP-DLP----------ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cccc-chh----------hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0000 100 1122335577788888888999999999988888654
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.67 E-value=3e-08 Score=83.38 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+|-|-||.+.++.++|+.+|..||.|.+|.|+.|+.|+.++|||||-|.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~ 63 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFH 63 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEee
Confidence 44568999999999999999999999999999999999999999999999995
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.66 E-value=2e-05 Score=70.63 Aligned_cols=196 Identities=13% Similarity=0.032 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Q 013489 57 SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136 (442)
Q Consensus 57 ~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~ 136 (442)
...+...+..+.. .++.+.+...|++++...|.....|......+. ..++.+.+...|++++...+.....+..+-..
T Consensus 31 ~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLE-QGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4566665554443 356678999999999999998888888766444 46888999999999998765533222211111
Q ss_pred HHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 137 RIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 137 ~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
+. .. .++......|.+++... ..+.....+...+.+....| +++.|...+.+++...|+.
T Consensus 109 ~~-----~~---------g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 109 LC-----QQ---------GKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAG-DFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HH-----Hc---------ccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCC
Confidence 10 00 22333333444443310 12233456777788888888 9999999999999999998
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 217 ~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
...|..++.+....|+++.|..++++++.. ..+.+. .+..........|+.+......
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAE-SLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHHHhhHHHHHHHH
Confidence 889999999999999999999999999973 333444 3335566667777776655443
No 76
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.66 E-value=4.6e-08 Score=99.84 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=49.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||||||+.+++++|+.+|..||.|..+.|+.++.+|+++|||||+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~ 345 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYK 345 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEEC
Confidence 4569999999999999999999999999999999999889999999999995
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.64 E-value=2.9e-08 Score=95.98 Aligned_cols=50 Identities=34% Similarity=0.456 Sum_probs=49.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~ 68 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFT 68 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecC
Confidence 79999999999999999999999999999999999999999999999996
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=2.1e-08 Score=91.16 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=49.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-|+||||.+.++..++.|+..|.+||+|+++.+.-|+.||+++|||||+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYE 163 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYE 163 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEe
Confidence 479999999999999999999999999999999999999999999999995
No 79
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.62 E-value=0.00013 Score=74.90 Aligned_cols=253 Identities=16% Similarity=0.146 Sum_probs=155.0
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH------
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG------ 92 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~------ 92 (442)
+|.+.+.|....++-.+.|++++++-+|.|||..+|.+..+-..++.++.+.+ +...+...|.+.++.+|.+.
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 34477899999999999999999999999999999999888888888777554 45568899999999999443
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh-----hhHHHHHHHHHHHHHH------HHHHhh---ccC---------
Q 013489 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAF-----STFEEYLDLFLTRIDG------LRRRIL---FSG--------- 149 (442)
Q Consensus 93 ~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~-----~~~~~~~~~~~~~~~~------l~rr~~---~~~--------- 149 (442)
.+|.. +.+... ....+.+-.+++.++..+. +....+..+++..-.+ +.+... ..+
T Consensus 282 ~i~~~-~~~~~~-~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 282 LIRRV-AHYFIT-HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHH-HHHHHH-hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 34432 332222 2333778888888886332 2344555555542221 111110 000
Q ss_pred ---------ccchh--hhHHHHHHHH----------HHHHH-HHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 013489 150 ---------EVEGV--LDYSLIRETF----------QRASD-YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWE 207 (442)
Q Consensus 150 ---------~~~~~--~~~~~~r~~~----------~~a~~-~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~ 207 (442)
...+. .++..++... ..++. ++...........+++...++.....| .+..|..+|.
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~-~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG-KYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 00000 1111111111 11111 111111112234567777888888888 8999999999
Q ss_pred HHHHhchhH-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 208 RLLKISGAM-LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 208 ~~l~~~~~~-~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.++...+.+ ..+|...+.+++..|.++.|-..|++++.. .++. .++-.....+-...|+.+....+++
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~-~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDN-LDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCc-hhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 998886544 468999999999999999999999999963 3332 2333333445555566654444443
No 80
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=9.4e-06 Score=77.23 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=108.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc-------------------------------CChhhHHHHHHHHHh
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-------------------------------GDPGRVQLLYERAIT 51 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~-------------------------------g~~~~~~~lyERal~ 51 (442)
.+-..||..++..|+ ..++++.+.+-+-..... ++.+.+..+|.|||.
T Consensus 280 ~a~s~Feei~knDPY-Rl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 280 QAESVFEEIRKNDPY-RLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred HHHHHHHHHHhcCCC-cchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 355689999988886 344565555444322110 123456667777777
Q ss_pred cCCCCHHHHHHHHH-HHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHH
Q 013489 52 DFPVSSDLWLDYTQ-YLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (442)
Q Consensus 52 ~~p~~~~lW~~Y~~-~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~ 130 (442)
.||....+|.--.. |++ .++...+...|.|||..||.+...|...-...+.. +=..-+.--
T Consensus 359 LNp~~~~aWTLmGHEyvE--mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-~Mh~YaLyY--------------- 420 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVE--MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM-KMHFYALYY--------------- 420 (559)
T ss_pred cCcchhHHHHHhhHHHHH--hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-cchHHHHHH---------------
Confidence 77777777765442 222 23344566777777777777777776644433321 001111222
Q ss_pred HHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 131 LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 131 ~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
|++|..+ -|...++|...++.+.+++ .++.|.+.|.+++
T Consensus 421 ---------------------------------fqkA~~~-------kPnDsRlw~aLG~CY~kl~-~~~eAiKCykrai 459 (559)
T KOG1155|consen 421 ---------------------------------FQKALEL-------KPNDSRLWVALGECYEKLN-RLEEAIKCYKRAI 459 (559)
T ss_pred ---------------------------------HHHHHhc-------CCCchHHHHHHHHHHHHhc-cHHHHHHHHHHHH
Confidence 3333332 2344467777777777777 7777777777777
Q ss_pred HhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 211 ~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.............+++....++.+.|-..|++.+.
T Consensus 460 ~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 460 LLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66544455666677777777777777777777775
No 81
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.3e-05 Score=72.89 Aligned_cols=243 Identities=14% Similarity=0.065 Sum_probs=147.6
Q ss_pred hhhHHHHHHhhc-CCCCChHhHHHHHHHHHHH-HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHH
Q 013489 3 NARAHLEEQISR-QDLSDSEKFQQYMIYLKYE-QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDV 80 (442)
Q Consensus 3 ~~r~~yE~~l~~-~~~~~~~~~~~w~~y~~~e-~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v 80 (442)
+++..+|..+.. .|. ......++.-. ....|++.+..+||..+..+|...+----|-+.|..... ...+.-+
T Consensus 245 e~~~k~e~l~~~gf~~-----~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~-~skLs~L 318 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPN-----SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND-KSKLSYL 318 (559)
T ss_pred HHHHHHHHHHhccCCc-----cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-hHHHHHH
Confidence 466777777766 332 22344444433 245689999999999999999876655556555543321 1222222
Q ss_pred HHHHHH---cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhh
Q 013489 81 YSRATK---NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (442)
Q Consensus 81 ~erAl~---~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (442)
-+.... .-|..+-|-..|-. + .+..+.+-.-|+|||..++. .+|-.+.- +++.- .
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYS-l---r~eHEKAv~YFkRALkLNp~~~~aWTLmGH-----EyvEm-----------K 378 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYS-L---RSEHEKAVMYFKRALKLNPKYLSAWTLMGH-----EYVEM-----------K 378 (559)
T ss_pred HHHHHHhccCCccceeeehhHHH-H---HHhHHHHHHHHHHHHhcCcchhHHHHHhhH-----HHHHh-----------c
Confidence 222222 22554444444422 2 24567888899999988765 22221110 01100 0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ 235 (442)
+-...-..|.+|+++ +|..++.|--..+.+..++ -.-=|.=.|++++..-|+...+|....++..+.+..+.
T Consensus 379 Nt~AAi~sYRrAvdi-------~p~DyRAWYGLGQaYeim~-Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDI-------NPRDYRAWYGLGQAYEIMK-MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred ccHHHHHHHHHHHhc-------CchhHHHHhhhhHHHHHhc-chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence 111122445555553 6777888988888887777 67788889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 236 ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
|.++|++|+.- ++....++-....+-+..++..+-..+.++|..
T Consensus 451 AiKCykrai~~---~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 451 AIKCYKRAILL---GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhc---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999962 333333333333343344444443334444433
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=98.59 E-value=1.1e-07 Score=68.62 Aligned_cols=47 Identities=34% Similarity=0.517 Sum_probs=44.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+|||+|||..++.++|+.+|.++|.|..+.++.++ |.++|+|||+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~ 47 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFE 47 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeC
Confidence 58999999999999999999999999999999875 889999999995
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.59 E-value=1.1e-07 Score=88.86 Aligned_cols=51 Identities=35% Similarity=0.524 Sum_probs=49.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||||||+.+++++|..+|..||.|..+.++.++.+|+++|||||+|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~ 165 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFE 165 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEec
Confidence 689999999999999999999999999999999999889999999999995
No 84
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.58 E-value=1.2e-07 Score=95.45 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=49.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 569999999999999999999999999999999999889999999999996
No 85
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1e-07 Score=83.49 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=44.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|+|||||++..++++.+++.|++||+|.+||+..+ +||+||-|.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 457899999999999999999999999999999999998 499999995
No 86
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=0.00012 Score=72.59 Aligned_cols=246 Identities=12% Similarity=0.031 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
.+.--+......|+++.+..+|++++...|.+. .+-..++...... +..+.+...+++.+..-|.+..++..+...+.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455556666778999999999999999999885 6888787766644 45678999999999999999988888776444
Q ss_pred HccCCHHHHHHHHHHHHhCChhhHHHHH----HHHHHHHH---------HHHHHhh-cc----Cccc---hhhhHHHHHH
Q 013489 104 RSRASEEEISTVFEKSLLCAFSTFEEYL----DLFLTRID---------GLRRRIL-FS----GEVE---GVLDYSLIRE 162 (442)
Q Consensus 104 ~~~~~~~~~~~i~~~al~~~~~~~~~~~----~~~~~~~~---------~l~rr~~-~~----~~~~---~~~~~~~~r~ 162 (442)
..++.+.+..++++.+..+......+. ..+...++ .+..-.. .+ +... .....-...+
T Consensus 199 -~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 199 -RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred -HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 468888899999998865332222221 11211110 1100000 00 0000 0000011112
Q ss_pred HHHHHHHHHhhhhcCchhhHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH--HHHHHHHHHHHhcccHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLR----LYAYWAHLEQSMGKDMVSARGVWERLLKISGAML--EAWQSYISMEIELDHINEA 236 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~----l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~--~~w~~~~~~e~~~g~~~~a 236 (442)
.++.|...+...+...+.... ++..+..+ ..+ +...+.+.++++++.+|+++ .+...+..+....|++++|
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~-~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPE-DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 346677777666654333321 22223322 234 78889999999999999888 8888899988889999999
Q ss_pred HHHHHH--HHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 237 RSIYKR--CYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 237 r~i~~r--al~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
+..|++ ++.. . +.++. +..+...-...|+.+.-.+...+
T Consensus 355 ~~~le~a~a~~~--~-p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 355 ADAFKNVAACKE--Q-LDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHhHHhhc--C-CCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999994 5542 2 33444 45778888888887766655544
No 87
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.55 E-value=2e-05 Score=80.67 Aligned_cols=236 Identities=14% Similarity=0.075 Sum_probs=143.9
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHhcchhhH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLD-----YTQYLDKTLKVGNV 76 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~-----Y~~~l~~~~~~~~~ 76 (442)
..||-.|-++|+..|. +++...+++.+..+.|+..+++.-|.+++..+|...-.|+. ++.+..... ..+.
T Consensus 224 ~qA~~cy~rAI~~~p~----n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~ 298 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS----NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERER 298 (895)
T ss_pred HHHHHHHHHHHhcCCc----chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHH
Confidence 3688899999999987 78877889999999999999999999999999944433332 344444333 3377
Q ss_pred HHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCh----------------------hhHHHHH
Q 013489 77 VRDVYSRATKNCPW--VGELWVRSLLSLERSRASEEEISTVFEKSL-LCAF----------------------STFEEYL 131 (442)
Q Consensus 77 ~~~v~erAl~~~p~--s~~lW~~y~~~le~~~~~~~~~~~i~~~al-~~~~----------------------~~~~~~~ 131 (442)
+.++++-++..+-. +..-...|+..+-.........+.|-...- .... ....--+
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 88899999884421 111112222212211111122222222111 0000 0000001
Q ss_pred HH-----HHHHH------HHHHHHhhccCc------cchhhhHHHH---HHHHHHHHHHHhhhhcC-chhhHHHHHHHHH
Q 013489 132 DL-----FLTRI------DGLRRRILFSGE------VEGVLDYSLI---RETFQRASDYLSEQMKN-TDGLLRLYAYWAH 190 (442)
Q Consensus 132 ~~-----~~~~~------~~l~rr~~~~~~------~~~~~~~~~~---r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~ 190 (442)
.+ .+..+ +.+- .++...+ ++-+.|+... .+.|..|+.++...... ..+..-+|...++
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll-~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALL-HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHhHhhhhhcccccchHHHHH-HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 11 11100 0010 0011111 1111121111 13356788888766542 2233569999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 191 ~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
.+..++ ..+.|.+.|+++|...|++.++-+..+.+....|+.++|..++...+
T Consensus 458 c~~~l~-e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELG-EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHh-hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999 99999999999999999999999999999999999999999988855
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=6.8e-06 Score=74.84 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=120.8
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHH
Q 013489 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIST 114 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~ 114 (442)
..|-+.++...++-+|...|.-.. .+-... +....+.++.+..+|...+..+|....+-..-++..|. .+..+.+-+
T Consensus 235 rLgm~r~AekqlqssL~q~~~~dT-fllLsk-vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~a~~ 311 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQFPHPDT-FLLLSK-VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQEDALQ 311 (478)
T ss_pred HhcChhhhHHHHHHHhhcCCchhH-HHHHHH-HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHHHHH
Confidence 346666676777777766654322 111111 22223345566667777777777666655555554443 344455666
Q ss_pred HHHHHHhCChhhHHHHH------------HHHHHHHHHHHHHhhccCc--cchh----------hhHHHHHHHHHHHHHH
Q 013489 115 VFEKSLLCAFSTFEEYL------------DLFLTRIDGLRRRILFSGE--VEGV----------LDYSLIRETFQRASDY 170 (442)
Q Consensus 115 i~~~al~~~~~~~~~~~------------~~~~~~~~~l~rr~~~~~~--~~~~----------~~~~~~r~~~~~a~~~ 170 (442)
+|..++...+.+++... ++-+. |. ||++.... .+-+ ..++.+-..|++|+..
T Consensus 312 lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr---yY-RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 312 LYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR---YY-RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHhcCCccceeeeeeeeccccCCChHHHHH---HH-HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 66666654333221100 11111 11 23322111 1100 2333445667777665
Q ss_pred HhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
... .+...++|-....+....| |+..|...|.-+|..++++.+.....+-++.+.|+++.||.+|..|-+
T Consensus 388 at~----~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 388 ATQ----PGQAADVWYNLGFVAVTIG-DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred ccC----cchhhhhhhccceeEEecc-chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 421 2345689998888888889 999999999999999999999999999999999999999999999976
No 89
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.52 E-value=0.00018 Score=71.02 Aligned_cols=243 Identities=11% Similarity=0.031 Sum_probs=156.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~-lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
+..-+......|+++.+..+|+++....|.+.- ..+.-..+.. ..++.+.+...+++++...|.+..+....+..+.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~- 198 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI- 198 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-
Confidence 444455557789999999999999999888753 3233233333 3456788999999999999999877766665343
Q ss_pred ccCCHHHHHHHHHHHHhCChhhHHHHHHHH-HHHHHHHHHHhhccC--c----cc----hhh-hH---------HHHHHH
Q 013489 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSG--E----VE----GVL-DY---------SLIRET 163 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~~~~~~~~~~~~~-~~~~~~l~rr~~~~~--~----~~----~~~-~~---------~~~r~~ 163 (442)
..++.+.+..++.+..........+.-.+. ..++..+.......+ . +. ... +. ....+.
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 457888899888887765433222221111 111111110000000 0 00 000 00 001122
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
.+.|...+...+. .+....+...|+++. .+ +++.+.+..++.++.+|+++.+.+.+..+....|++..|+..|+++
T Consensus 279 ~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~~-~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 279 HDTAQQIILDGLK-RQYDERLVLLIPRLK--TN-NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHhhcc--CC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566677766665 333445666676653 25 8999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
+.. .++ . ..+..+....+..|..+.-..+..
T Consensus 355 l~~--~P~-~-~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 355 LKQ--RPD-A-YDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred Hhc--CCC-H-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 973 222 3 334567788888898766554444
No 90
>smart00360 RRM RNA recognition motif.
Probab=98.51 E-value=1.8e-07 Score=67.15 Aligned_cols=46 Identities=35% Similarity=0.515 Sum_probs=43.4
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 396 LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 396 v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
|+|||..+++++|+.+|.+||.|..+.+..++.+++++|+|||+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~ 46 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFE 46 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeC
Confidence 6899999999999999999999999999998778999999999995
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.51 E-value=3.6e-05 Score=76.26 Aligned_cols=218 Identities=13% Similarity=0.022 Sum_probs=134.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHH---
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRD--- 79 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~--- 79 (442)
.+...|+.++...|.. ...+...++......|+++.+...+++.+...|.++.++..++...... ++.+.+..
T Consensus 136 ~A~~~l~~a~~~~p~~---~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~ 211 (409)
T TIGR00540 136 RANQHLEEAAELAGND---NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-GAWQALDDIID 211 (409)
T ss_pred HHHHHHHHHHHhCCcC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 3556677776665531 2345555677677788888888888888888888887766665544322 22222222
Q ss_pred -----------------------------------HHHHHHHcCC----CcHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013489 80 -----------------------------------VYSRATKNCP----WVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (442)
Q Consensus 80 -----------------------------------v~erAl~~~p----~s~~lW~~y~~~le~~~~~~~~~~~i~~~al 120 (442)
.+..+....| .+..++..++..+. ..+..+.+..++++++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~-~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI-DCDDHDSAQEIIFDGL 290 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH-HCCChHHHHHHHHHHH
Confidence 3333344445 35666666666333 3566677777777777
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhH--HHHHHHHHHHHHcCCC
Q 013489 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL--RLYAYWAHLEQSMGKD 198 (442)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~--~l~~~~a~~e~~~~~~ 198 (442)
...++.....+..+..+. .+ .. .+. ..+...++.+....+... .+...++.+....+ +
T Consensus 291 ~~~pd~~~~~~~~l~~~~-----~l-~~------~~~-------~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~-~ 350 (409)
T TIGR00540 291 KKLGDDRAISLPLCLPIP-----RL-KP------EDN-------EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG-E 350 (409)
T ss_pred hhCCCcccchhHHHHHhh-----hc-CC------CCh-------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc-c
Confidence 654443211111110000 00 00 112 223333333333344444 78888999999988 9
Q ss_pred HHHHHHHHH--HHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 199 MVSARGVWE--RLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 199 ~~~ar~i~~--~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+++|++.|+ .+++..|+... +..++.+....|+.+.|+.+|++++.-
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999 57777888766 559999999999999999999999864
No 92
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.00013 Score=69.27 Aligned_cols=198 Identities=11% Similarity=0.003 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
+|.-+-......+..+++..+++.+|..+|.+..+|..-...+...+...+.+...+++++...|.+..+|......++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 34333333345668899999999999999999999998877776544345678899999999999999999987655554
Q ss_pred ccCC-HHHHHHHHHHHHhCChhhHH--HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhh
Q 013489 105 SRAS-EEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (442)
Q Consensus 105 ~~~~-~~~~~~i~~~al~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~ 181 (442)
.... .+.....+++++...+.++. .+..+.+... ..+++++.+....+..++..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-----------------------~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-----------------------GGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHCCCc
Confidence 3322 24567778888887766433 2222221111 22556666666665544444
Q ss_pred HHHHHHHHHHHHHc---CC---CHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHh
Q 013489 182 LRLYAYWAHLEQSM---GK---DMVSARGVWERLLKISGAMLEAWQSYISMEIEL----DHINEARSIYKRCYS 245 (442)
Q Consensus 182 ~~l~~~~a~~e~~~---~~---~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~----g~~~~ar~i~~ral~ 245 (442)
...|..-.-+.... ++ ..+....+..++|...|++...|.....+.... +....|...+..++.
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 55666544333332 21 135677778899999999999998888877663 334557777888775
No 93
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.49 E-value=0.00021 Score=78.13 Aligned_cols=266 Identities=8% Similarity=-0.011 Sum_probs=159.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
.++..|+........ + +...|...|...-+.|+++.+..+|++..... ..+...|...|..+.+. +..+.+..+|
T Consensus 490 ~A~~vf~eM~~~Gv~--P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf 565 (1060)
T PLN03218 490 AMFEVFHEMVNAGVE--A-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVL 565 (1060)
T ss_pred HHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 567788887765421 1 56688888888888899999999998887652 34567787777766644 4567788888
Q ss_pred HHHHHc----CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh----hHHHHHHHHHHHH--H---HHHHHhhcc
Q 013489 82 SRATKN----CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTRI--D---GLRRRILFS 148 (442)
Q Consensus 82 erAl~~----~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~----~~~~~~~~~~~~~--~---~l~rr~~~~ 148 (442)
++.... .|. ...|...|..+-+ .+..+.+..+|+.+...+.. .+...+..+...- + .+-..+...
T Consensus 566 ~eM~~~~~gi~PD-~vTynaLI~ay~k-~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 566 AEMKAETHPIDPD-HITVGALMKACAN-AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHhcCCCCCc-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 888752 243 4566666664444 67788888899888876542 1222222221100 0 000011000
Q ss_pred CccchhhhHHHHH------HHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-chhHHHHH
Q 013489 149 GEVEGVLDYSLIR------ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAW 220 (442)
Q Consensus 149 ~~~~~~~~~~~~r------~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~~~~~~w 220 (442)
...-+..-+..+. ..++.|..++...... ..+....|...+..+.+.| +++.|.++|+.+... ...+...|
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 0000000011111 1234455555444432 2334456777777778888 899999999888765 22235678
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 221 QSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 221 ~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
...+......|+++.|..+|+.+....+.++ ...|...+.-....|.++....++
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd--~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPN--TITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888999999999998776433322 234555555555566655544433
No 94
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.7e-05 Score=78.77 Aligned_cols=82 Identities=9% Similarity=0.077 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
.|+.|..++..++...+..+..|-=..-++.+.+ ..+.|.-.|++|+..+|.+..+...+..++...|..++|..+|++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe-k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE-KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc-hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 3444444444444444444444444444444444 455555555555555555555555555555555555555555555
Q ss_pred HHh
Q 013489 243 CYS 245 (442)
Q Consensus 243 al~ 245 (442)
|+.
T Consensus 549 A~~ 551 (638)
T KOG1126|consen 549 AIH 551 (638)
T ss_pred HHh
Confidence 554
No 95
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=5.5e-08 Score=90.51 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=49.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.+++|||.|+..+++.+++.+|++||.|.+|.|++| ..|.+||+|||.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFS 173 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEe
Confidence 44679999999999999999999999999999999999 69999999999996
No 96
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.49 E-value=3.8e-05 Score=75.74 Aligned_cols=212 Identities=13% Similarity=0.097 Sum_probs=137.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.++..|+.+...+|.. .......-+......|+++.+...+++.+...|.++.+....+...... ++.+.+..++.
T Consensus 136 ~A~~~l~~A~~~~~~~---~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~ 211 (398)
T PRK10747 136 RANQHLERAAELADND---QLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILP 211 (398)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 4667788888776641 1223333356667789999999999999999999987665555544322 33344444444
Q ss_pred HHHHcC------------------------------------------CCcHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013489 83 RATKNC------------------------------------------PWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (442)
Q Consensus 83 rAl~~~------------------------------------------p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al 120 (442)
+..+.. |....++..|+..+.. .+..+.+..++++++
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~~~L~~~l 290 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 444333 3344455555553333 344455555555555
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHH
Q 013489 121 LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV 200 (442)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~ 200 (442)
..+++. ..+.++ . ++ ....+++++..++......|....+...++++....+ +..
T Consensus 291 ~~~~~~--~l~~l~---~-----~l--------------~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~-~~~ 345 (398)
T PRK10747 291 KRQYDE--RLVLLI---P-----RL--------------KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG-EWQ 345 (398)
T ss_pred hcCCCH--HHHHHH---h-----hc--------------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHH
Confidence 432221 000011 0 00 0022345556665555556777789999999999999 999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 201 SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 201 ~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.|++.|++++...|+... +..++.+....|+.+.|..+|++++.
T Consensus 346 ~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 346 EASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998654 66788999999999999999999986
No 97
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.48 E-value=2.2e-07 Score=95.85 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=47.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||..+++++|+++|+.||.|.+|+++.| .+|+++|||||+|.
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 458999999999999999999999999999999999 79999999999996
No 98
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.45 E-value=0.00048 Score=75.39 Aligned_cols=268 Identities=9% Similarity=-0.011 Sum_probs=144.4
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++..|+..+..... .+...|...|...-+.|+++.+..+|+++.... ..+...|...|..+.+. +..+.+..+|+
T Consensus 456 A~~lf~~M~~~Gl~---pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf~ 531 (1060)
T PLN03218 456 ALRVLRLVQEAGLK---ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 45556555544321 134466777777777777777777777777653 23667777777655543 34556777777
Q ss_pred HHHHc-CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CC--hh--hHHHHHHHHHHHH--H---HHHHHhhccCc
Q 013489 83 RATKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLL--CA--FS--TFEEYLDLFLTRI--D---GLRRRILFSGE 150 (442)
Q Consensus 83 rAl~~-~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~--~~--~~--~~~~~~~~~~~~~--~---~l~rr~~~~~~ 150 (442)
+.... +.-+...|...|..+-+ .+..+.+..+|+.+.. .+ ++ .+...+..+...- + .+-+.+.....
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k-~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQ-SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 77652 22234566666665544 4667777777777654 11 22 1111222211000 0 00000000000
Q ss_pred cchhhhHHHHH------HHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-chhHHHHHHH
Q 013489 151 VEGVLDYSLIR------ETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQS 222 (442)
Q Consensus 151 ~~~~~~~~~~r------~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~~~~~~w~~ 222 (442)
.....-+..+- ..++.|..++...... ..+....|...+......| +++.|.++|+.+.+. .+.+...|..
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG-DLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 00000011111 1124455544433322 1223345566666666667 788888888887776 3344567778
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 223 ~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
.+....+.|+++.|..+|+......+.++ ...|...+.--...|..+.....+..
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888888887765333222 34577777777777777666655554
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=7.3e-07 Score=66.59 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=43.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++.+||.|||+.+|.++..++|..||+|..|+|-..+. .+|-|||.|.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYe 65 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYE 65 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEeh
Confidence 456899999999999999999999999999999876544 5799999984
No 100
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.43 E-value=2.9e-06 Score=68.75 Aligned_cols=110 Identities=17% Similarity=0.348 Sum_probs=84.4
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc----CChhhHHHHHHHHHhcCCCC---------HHHHHHHHHHHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS----GDPGRVQLLYERAITDFPVS---------SDLWLDYTQYLD 68 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~----g~~~~~~~lyERal~~~p~~---------~~lW~~Y~~~l~ 68 (442)
-+.|..||..|.... ...+-++.|..||.|.... +.......++|||+..+..+ ..+|+.|+.+..
T Consensus 2 ~~~r~~~e~~i~~~~-~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYE-EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp HHHHHHHHHHHHCCG-GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHHHcc-CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Confidence 467999999998876 1234578899999998854 34567788999999976554 369999998643
Q ss_pred HhcchhhHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013489 69 KTLKVGNVVRDVYSRATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (442)
Q Consensus 69 ~~~~~~~~~~~v~erAl~--~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al 120 (442)
....||..... ..-....+|..|+.+++. .++...+..||++++
T Consensus 81 -------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -------DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp -------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 25678887776 346678999999998887 688999999999875
No 101
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=4e-07 Score=71.29 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=52.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+.+...|||.++...++++++.+.|..||.|+.+.+-.|+.||-.+|||.|+|.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYe 122 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYE 122 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehH
Confidence 34466789999999999999999999999999999999999999999999999985
No 102
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.39 E-value=4.3e-07 Score=93.77 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=47.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+|||+|||.++++++|+++|+.||.|.+|+++.+ .+|+++|||||+|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~ 137 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFE 137 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEEC
Confidence 458999999999999999999999999999999998 69999999999995
No 103
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=8.5e-07 Score=77.27 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=49.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+.+.|.-||.++|+++++.+|+..|.|.+|++++|+-+|++-|||||-|.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv 91 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 91 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeec
Confidence 44568999999999999999999999999999999999999999999999874
No 104
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=5e-05 Score=75.45 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=140.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 47 ERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 47 ERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
.-.|..+|++|+-|....+++- ..++.+.+...|+||++.-|.....+...- ........++.+...|..||.+.+..
T Consensus 411 q~Li~~~~~sPesWca~GNcfS-LQkdh~~Aik~f~RAiQldp~faYayTLlG-hE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFS-LQKDHDTAIKCFKRAIQLDPRFAYAYTLLG-HESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhh-hhhHHHHHHHHHHHhhccCCccchhhhhcC-ChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 4456678888888888888655 446677788888888888885433332211 11112344677888888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013489 127 FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVW 206 (442)
Q Consensus 127 ~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~ 206 (442)
+..++.+-+.|. -.+-++.|.-++.+++.-+|....+...+..++.+.+ ..++|..+|
T Consensus 489 YnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k-~~d~AL~~~ 546 (638)
T KOG1126|consen 489 YNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK-RKDKALQLY 546 (638)
T ss_pred hHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh-hhhHHHHHH
Confidence 555555444332 1256889999999999888888888888999999999 899999999
Q ss_pred HHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCH
Q 013489 207 ERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (442)
Q Consensus 207 ~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~ 270 (442)
++|+..+|.++-.-..-+......+++..|...++..-. ..+ +.. .++-.....-+.+|..
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~-~vP-~es-~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE-LVP-QES-SVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH-hCc-chH-HHHHHHHHHHHHHccc
Confidence 999999999887777777777778999999999998654 222 222 3444445555555653
No 105
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.38 E-value=6.9e-07 Score=86.68 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=48.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||..+++++|+.+|++||.|..++++.+..+|.++|||||+|.
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~ 139 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFD 139 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEEC
Confidence 458999999999999999999999999999999999889999999999995
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=1.7e-05 Score=70.04 Aligned_cols=117 Identities=13% Similarity=0.040 Sum_probs=93.8
Q ss_pred hHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch--hhHHHHHHH
Q 013489 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV--GNVVRDVYS 82 (442)
Q Consensus 5 r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~--~~~~~~v~e 82 (442)
-..|+.+|..+|. +.+.|..........|+++.+...|++++...|.+..+|..|+..+....+. .+.+..+|+
T Consensus 59 i~~l~~~L~~~P~----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 59 LQALQDKIRANPQ----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3456777777765 7889999999888999999999999999999999999999999854323222 467899999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
++++..|.....|......+. ..++.+++...|++++...++.
T Consensus 135 ~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 135 KALALDANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 999999998888877665443 4788899999999998776653
No 107
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=8.8e-07 Score=77.21 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=50.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.......|||-||.+++.+.-|.++|.+||.|..|++++|..|.+.+|||||..+
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMt 328 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 328 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEec
Confidence 3455679999999999999999999999999999999999888999999999864
No 108
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.35 E-value=5e-07 Score=81.42 Aligned_cols=82 Identities=13% Similarity=0.304 Sum_probs=74.7
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~ 100 (442)
+++..|..|+.+..+.|....+-.+|-.||..+|+++++|+--+.|......+.+.++.+|.+++|..|.++.||..|.+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 47889999999999999999999999999999999999999878877766667788999999999999999999999998
Q ss_pred HHH
Q 013489 101 SLE 103 (442)
Q Consensus 101 ~le 103 (442)
+|
T Consensus 185 -~E 186 (435)
T COG5191 185 -ME 186 (435)
T ss_pred -HH
Confidence 44
No 109
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.33 E-value=3.1e-07 Score=88.38 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=46.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 394 AFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 394 v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+|||||.+++++++|+.+|.+||.|..|.++.|..||+++|||||+|.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 999999999999999999999999999999999889999999999996
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.33 E-value=1.3e-06 Score=63.18 Aligned_cols=48 Identities=40% Similarity=0.536 Sum_probs=43.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+|+|+|||..+++++|+.+|..+|.|..+.+..++ .+.++|+|||+|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~ 48 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFE 48 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEEC
Confidence 58999999999999999999999999999999885 4478999999995
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=8.5e-05 Score=72.78 Aligned_cols=215 Identities=15% Similarity=0.142 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Q 013489 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFL 135 (442)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~ 135 (442)
.++-...=+.++. .+. ...+.=.||-||..-|...+.|...-. ....++....+...+.+|+...+.+...+..+-.
T Consensus 285 ~pdPf~eG~~lm~-nG~-L~~A~LafEAAVkqdP~haeAW~~LG~-~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 285 HPDPFKEGCNLMK-NGD-LSEAALAFEAAVKQDPQHAEAWQKLGI-TQAENENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred CCChHHHHHHHHh-cCC-chHHHHHHHHHHhhChHHHHHHHHhhh-HhhhccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4444555555554 333 556778999999999999999998543 5555677777888999999988875444332222
Q ss_pred H---------HHHHHHH--Hhhc------c---C-------ccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHH
Q 013489 136 T---------RIDGLRR--RILF------S---G-------EVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (442)
Q Consensus 136 ~---------~~~~l~r--r~~~------~---~-------~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (442)
. .|.+|.. +..+ . . ...+...+..+...|-.|..... ....+++..-.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~L 436 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGL 436 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhh
Confidence 2 1222211 0000 0 0 00111123334444444433221 11234566666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013489 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (442)
Q Consensus 189 a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (442)
.-++...+ ++++|...|+.||+..|+++.+|-.+.--...-.....|..-|.||++ +.+... ..+.++--.|=
T Consensus 437 GVLy~ls~-efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV----R~RyNlgIS~m 509 (579)
T KOG1125|consen 437 GVLYNLSG-EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV----RVRYNLGISCM 509 (579)
T ss_pred HHHHhcch-HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee----eeehhhhhhhh
Confidence 65555555 999999999999999999999999999988776788999999999997 443333 45566666677
Q ss_pred CHhhHHHHHHhhchhHH
Q 013489 269 TLEDFDHSVQKVTPRLE 285 (442)
Q Consensus 269 ~~~~~~~~~~~~~~~~~ 285 (442)
++..+.+|+.-...++.
T Consensus 510 NlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALS 526 (579)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 78888888877665553
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=6.7e-07 Score=78.20 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=53.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+.|++||-+||.+.++.+|-.+|-+||.|.+.++..|+.|+.||+||||.|.
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 34678999999999999999999999999999999999999999999999999995
No 113
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00019 Score=68.09 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=131.6
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-hhHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSR 83 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g-~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~-~~~~~~v~er 83 (442)
..++.+|..+|. ++.+|..-.......| +++.++..++++|..+|.+..+|..-.-.+...+.. .+.....+++
T Consensus 58 ~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 58 DLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 345566666654 8899987776666666 578999999999999999999999776555543321 2456789999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHHHHHHhhccCccchhhhHHHHH
Q 013489 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~--~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (442)
++..-|.....|....-.+.. .+..++....+++++...+.+. |.+..+.+.. ... . ... .
T Consensus 134 al~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~-------~~~---l---~~~---~ 196 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR-------SPL---L---GGL---E 196 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh-------ccc---c---ccc---c
Confidence 999999999999997765555 4667788888999998766643 3332221111 100 0 000 1
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK---DMVSARGVWERLLKISGAMLEAWQSYISME 227 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~---~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e 227 (442)
..++..+.+...++...+.....|.+..-+....+. ....|..++..++...+++....-..+++.
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 123445566555555556666688887776665321 334588888888887776655444444433
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=4.5e-05 Score=67.31 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCC--HHHHHHHHH
Q 013489 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS--EEEISTVFE 117 (442)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~--~~~~~~i~~ 117 (442)
+.+...++++|..+|.+.+.|......+.. .++.+.+...|++|++..|....+|..|+..+....+. .+.+..+++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLW-RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 444455555566666666666655554432 23344455566666665565555555555433222222 244555555
Q ss_pred HHHhC
Q 013489 118 KSLLC 122 (442)
Q Consensus 118 ~al~~ 122 (442)
+++..
T Consensus 135 ~al~~ 139 (198)
T PRK10370 135 KALAL 139 (198)
T ss_pred HHHHh
Confidence 54443
No 115
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.23 E-value=0.00018 Score=76.43 Aligned_cols=258 Identities=10% Similarity=0.043 Sum_probs=153.9
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
++..+...++.... .+...|...++...+.|+++.|..+|++.. +.+...|...+..+... +..+.+..+|++
T Consensus 243 ~~~l~~~~~~~g~~---~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~-g~~~eA~~lf~~ 315 (697)
T PLN03081 243 GQQLHCCVLKTGVV---GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH-GYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHhCCC---ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 34455555544321 134467777888888888888888888764 34667788777766544 455678888888
Q ss_pred HHHc-CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh----hHHHHHHHHHHH--HHHHH---HHhhccCccch
Q 013489 84 ATKN-CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS----TFEEYLDLFLTR--IDGLR---RRILFSGEVEG 153 (442)
Q Consensus 84 Al~~-~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~----~~~~~~~~~~~~--~~~l~---rr~~~~~~~~~ 153 (442)
.... +.-+...+...+..+-+ .+..+.+..++..++..++. .+...++.|... ++... ..+...+
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---- 390 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSR-LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN---- 390 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHh-ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC----
Confidence 8763 32233456665654443 56778888888888876543 223333333210 00000 0110000
Q ss_pred hhhHHHHHHH------HHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh--HHHHHHHHH
Q 013489 154 VLDYSLIRET------FQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYI 224 (442)
Q Consensus 154 ~~~~~~~r~~------~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~--~~~~w~~~~ 224 (442)
..-|..+-.. .++|+.++...... ..+....+...+.-....| .++.|.++|+.+.+.++- ....|...+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 0112222222 24566655544332 2222334555555556667 899999999998875332 245677888
Q ss_pred HHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 225 SMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
+...+.|.++.|..+++++- + .....+|...+.-...+|+.+....+.++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~---~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP---F--KPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 88888999999999987742 1 22346788888888899988776665554
No 116
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=1.7e-06 Score=78.90 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=47.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+|||..+.++.+++||+.+|.-||.|..|.+.+++.++.+||||||+|.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~ 260 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYN 260 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEec
Confidence 48999999999999999999999999999999999888889999999995
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.21 E-value=2.5e-06 Score=72.25 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDV-GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...-++|+.+|+.+.+..+..+|.++ |.|..+++-+.+.||.|+|||||+|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFE 100 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFE 100 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEec
Confidence 34479999999999999999999998 78888899899999999999999995
No 118
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00053 Score=67.18 Aligned_cols=202 Identities=13% Similarity=0.064 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
.|..-..+-..-|...+|+.+|-.|...+|.-..-|+.|..-+- ..+..+.+...|.+|-+.+|.+..- ..|+.....
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHH
Confidence 45555555444455566666666666666666666666665433 2233455666666666666554321 122322222
Q ss_pred ccCCHHHHHHHHHHHHhCChhhHH--HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhH
Q 013489 105 SRASEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL 182 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~ 182 (442)
...+.+.+..-|..|+...|...- ..+.+.. + .+.++......|..++..+...........
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva----y------------~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA----Y------------TYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhhee----e------------hHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 245555566666666654433111 1111000 0 012222333344444433322221112233
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+|...+....+++ ..+.|...|+++|...|.++..+...+-..-..|+++.|...|.+||-
T Consensus 456 p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLN-KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhHHHHHHHHh-hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 46777888888888 899999999999999999888776666666678999999999999996
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0014 Score=58.13 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhc--chhhHHHHHHHHHHHcCCCcHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP---VSSDLWLDYTQYLDKTL--KVGNVVRDVYSRATKNCPWVGELWV 96 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p---~~~~lW~~Y~~~l~~~~--~~~~~~~~v~erAl~~~p~s~~lW~ 96 (442)
.+..|.++ ..-+++.+..+++..+...+ .-++.|.-|=....... +....+..++.+--..+|.|..+=.
T Consensus 16 ~~~~wr~~-----~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~ 90 (289)
T KOG3060|consen 16 QMRKWREE-----TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGK 90 (289)
T ss_pred HHHHHHhc-----cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHH
Confidence 45577543 44578889888888887654 45789988855444322 2234577888887778899999888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhc
Q 013489 97 RSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (442)
Q Consensus 97 ~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~ 176 (442)
.++..+|. .+..+++.++|++.+.-++.+...+. ..+..++.+- . .. .+++.-.++++.
T Consensus 91 lkam~lEa-~~~~~~A~e~y~~lL~ddpt~~v~~K----RKlAilka~G---K------~l----~aIk~ln~YL~~--- 149 (289)
T KOG3060|consen 91 LKAMLLEA-TGNYKEAIEYYESLLEDDPTDTVIRK----RKLAILKAQG---K------NL----EAIKELNEYLDK--- 149 (289)
T ss_pred HHHHHHHH-hhchhhHHHHHHHHhccCcchhHHHH----HHHHHHHHcC---C------cH----HHHHHHHHHHHH---
Confidence 88887776 68889999999999977665433322 2222222110 0 00 333334444443
Q ss_pred CchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhcccCCCCh
Q 013489 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD---HINEARSIYKRCYSKRFTGTGS 253 (442)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g---~~~~ar~i~~ral~~~~~~~~~ 253 (442)
+....+.|...++++...+ ++.+|-=+|+.++-..|.++-+...|++.....| +++-+|+.|.+|+.. .+
T Consensus 150 -F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--~~--- 222 (289)
T KOG3060|consen 150 -FMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--NP--- 222 (289)
T ss_pred -hcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--Ch---
Confidence 3455679999999999999 9999999999999999999999999999887776 678899999999973 22
Q ss_pred HHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 254 EDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
.=+.+|.-.-...-.+.++.+...+-
T Consensus 223 -~~~ral~GI~lc~~~la~~sk~~~k~ 248 (289)
T KOG3060|consen 223 -KNLRALFGIYLCGSALAQISKAELKR 248 (289)
T ss_pred -HhHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 22234444444555566555555543
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=0.00013 Score=60.97 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=91.7
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
..|+.+|...|. + |..........|+++.+...|.+++..+|.+...|...+..+... +..+.+...|++|+
T Consensus 14 ~~~~~al~~~p~----~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVDPE----T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCHH----H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 456777766653 3 445555567789999999999999999999999999999877644 45677999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
...|.....|......+.. .+..+++...|++++...+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKM-MGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred hcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999988775554 688999999999999877664
No 121
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=3.4e-06 Score=81.09 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=45.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.-.+.|.||||.+...+|..+|+.||.|.+|.|++. ..|+-.|||||.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk 166 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFK 166 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEe
Confidence 448999999999999999999999999999999986 56777799999996
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0014 Score=58.07 Aligned_cols=158 Identities=19% Similarity=0.125 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 013489 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (442)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~ 118 (442)
...|+.++.+.-..+|.+..+=..++.+++..+. ...+.++|++-+.-.|....++..-+-.+...+.+.+.++.+-+-
T Consensus 68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~-~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN-YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc-hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3444555555555666666666666666664432 244666677666666666666665555444444444433333221
Q ss_pred HHhCC--hhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC
Q 013489 119 SLLCA--FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (442)
Q Consensus 119 al~~~--~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (442)
.-.|. ...|++.-++|. ....|.+|.=+++..+-..|..+-++..++++.+..|
T Consensus 147 L~~F~~D~EAW~eLaeiY~------------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 147 LDKFMNDQEAWHELAEIYL------------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHhcCcHHHHHHHHHHHH------------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 11111 112222223331 1255666666666665555555566666666666655
Q ss_pred C--CHHHHHHHHHHHHHhchhHHHHHH
Q 013489 197 K--DMVSARGVWERLLKISGAMLEAWQ 221 (442)
Q Consensus 197 ~--~~~~ar~i~~~~l~~~~~~~~~w~ 221 (442)
+ |+..+|+.|.++++.+|.+.--|.
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 3 455667777777766665444443
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.12 E-value=0.00096 Score=60.60 Aligned_cols=186 Identities=15% Similarity=0.015 Sum_probs=124.4
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHH--
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL-- 94 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~l-- 94 (442)
....+.+...+......|+++.+...|++++..+|.++ ..|...+..+.. .++.+.+...|+++++..|.+..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 44566788887777789999999999999999999876 455666555553 356788999999999999976653
Q ss_pred -HHHHHHHHHHc-------cCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHH
Q 013489 95 -WVRSLLSLERS-------RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (442)
Q Consensus 95 -W~~y~~~le~~-------~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~ 166 (442)
|.......... .+..+.+...|++++...+.+......++ .+ ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~--~~--------------------------~~ 160 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK--RM--------------------------DY 160 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH--HH--------------------------HH
Confidence 32222222111 13345677777777765444211110000 00 00
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh---HHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~---~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
....+ .......+.+....| +...|...|+.++..+|+ ..+.|...+......|+++.|..+++..
T Consensus 161 ~~~~~----------~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 161 LRNRL----------AGKELYVARFYLKRG-AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHH----------HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00000 011224556667778 999999999999999765 3579999999999999999999988886
Q ss_pred Hh
Q 013489 244 YS 245 (442)
Q Consensus 244 l~ 245 (442)
..
T Consensus 230 ~~ 231 (235)
T TIGR03302 230 GA 231 (235)
T ss_pred Hh
Confidence 64
No 124
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.12 E-value=7.7e-06 Score=82.52 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+ .+++++|+.+|+.||.|.+|+++.++ +|||||+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~ 321 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMA 321 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEEC
Confidence 4567999999998 69999999999999999999999873 699999996
No 125
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=3.4e-06 Score=73.87 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=48.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.+++|||-|...-+|+|++.+|..||.|.+|.+.+. ..|.+||++||.|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~ 68 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFS 68 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEec
Confidence 36779999999999999999999999999999999998 58999999999995
No 126
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.11 E-value=0.012 Score=62.87 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+.....+......| ++..|.++++.++...|.+..+++.++++++..|...+|..+++.++.
T Consensus 416 ~~~~~l~a~~~~~~g-dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 416 IEGQTLLVQSLVALN-DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 344444566666667 888888888888888888888888888888888888888888877775
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00025 Score=58.29 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=93.9
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
+.|+.+|...|. +......++......|+.+.+...|++++..+|.++.+|...+..+... ++.+.+..+|++++
T Consensus 4 ~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSE----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChh----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467888877765 5666667777777889999999999999999999999999998877644 45677899999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
...|.....|......+. ..++.+.+...|++++...+.
T Consensus 79 ~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGE 117 (135)
T ss_pred hcCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccc
Confidence 999999898887666444 468899999999999987665
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.08 E-value=0.0008 Score=69.87 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=134.6
Q ss_pred hhhHHHHHHhhcCC-CCChHh---HH--HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH
Q 013489 3 NARAHLEEQISRQD-LSDSEK---FQ--QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (442)
Q Consensus 3 ~~r~~yE~~l~~~~-~~~~~~---~~--~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~ 76 (442)
+|+..|..++.... ..+++. .. .--+.+...+..+++..+...|--.|..+|...+-.+..+.+....+. ...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~-~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNN-LYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccC-cHH
Confidence 57778888886621 112222 11 122344455667889999999999999999999988888765554433 345
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHH--HHHHHHHHHHHHHHhhccCccchh
Q 013489 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY--LDLFLTRIDGLRRRILFSGEVEGV 154 (442)
Q Consensus 77 ~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~--~~~~~~~~~~l~rr~~~~~~~~~~ 154 (442)
+...+..++........+|..+-. +.........+..-|+.+++......+.| +.+-..++..+. ......
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~-~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~---~~~rn~--- 621 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGN-LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH---NPSRNP--- 621 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHH-HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc---ccccCh---
Confidence 888999999988777889887653 44333444445555555554332221222 222222222111 111110
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Q 013489 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY--WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (442)
Q Consensus 155 ~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~--~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~ 232 (442)
..-+..+++|+.++.+.+...|.. +|-. .+-+....| .+..|+.||.+....-.+..++|+..+.+...+|.
T Consensus 622 ---ek~kk~~~KAlq~y~kvL~~dpkN--~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 622 ---EKEKKHQEKALQLYGKVLRNDPKN--MYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCcch--hhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 223345566666655555443332 2221 233344445 66677777766666554556667777776666677
Q ss_pred HHHHHHHHHHHHhcccCCCCh
Q 013489 233 INEARSIYKRCYSKRFTGTGS 253 (442)
Q Consensus 233 ~~~ar~i~~ral~~~~~~~~~ 253 (442)
+..|.++|+.++....+.+.+
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCH
Confidence 777777777776654443433
No 129
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.08 E-value=3e-06 Score=70.23 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=46.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSI-RILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||||.+.+.+..|.++|+.||.+.+. .+++++.||.++|||||.|+
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 589999999999999999999999988654 78999999999999999885
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.4e-06 Score=76.10 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.-+||..|.+-++.++|.-+|+.||.|.+|.+++|..||-+-.||||+|.
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFe 289 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFE 289 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeec
Confidence 38999999999999999999999999999999999999999999999995
No 131
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.01 E-value=1.1e-05 Score=74.80 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=49.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....||||.||.++++.++++.|.++|.|..+.++.|..+++++|||||+|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 3558999999999999999999999999999999999999999999999984
No 132
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.01 E-value=0.0052 Score=61.51 Aligned_cols=241 Identities=15% Similarity=0.152 Sum_probs=143.6
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC--
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-- 88 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~--------~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~-- 88 (442)
+|.-..............|+++.+..+|++||.. +|.-..+=..++.++... +....+..+|++|+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 3445555666666666789999999999999987 444444444466655544 44567899999999843
Q ss_pred ------CCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh-------hHHH-HHHHHHHHHHHHHHHhhccCccchh
Q 013489 89 ------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-------TFEE-YLDLFLTRIDGLRRRILFSGEVEGV 154 (442)
Q Consensus 89 ------p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~-------~~~~-~~~~~~~~~~~l~rr~~~~~~~~~~ 154 (442)
|....+...... +.-..+.+.+++..+++|+..--. .+.. +..+.... ...
T Consensus 274 ~~G~~h~~va~~l~nLa~-ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~--~~~------------ 338 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAV-LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL--QSM------------ 338 (508)
T ss_pred hcCCCCHHHHHHHHHHHH-HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH--HHh------------
Confidence 334445554333 334578888999888888853111 1111 11111100 000
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----h-----hHHHHHHHHH
Q 013489 155 LDYSLIRETFQRASDYLSEQMKNTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS----G-----AMLEAWQSYI 224 (442)
Q Consensus 155 ~~~~~~r~~~~~a~~~l~~~~~~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~----~-----~~~~~w~~~~ 224 (442)
.+++..-..+.+++..+...+...+ ....+...++.+....| .++.|+++|+++++.. . ....+|.--.
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 1233344455566666655554433 44578888999999999 8999999999999873 2 1234776666
Q ss_pred HHHHhcccHHHHHHHHHHHHhc--ccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 225 SMEIELDHINEARSIYKRCYSK--RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~--~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.++ ..+.+..|-.+|.+++.- .+.++.| .+...|.++-..|-.+..++.|++
T Consensus 418 ~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 418 AYE-ELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHH-HhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHHH
Confidence 663 445566666666665532 1223334 455566777666644444444443
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.00 E-value=0.007 Score=63.19 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=127.5
Q ss_pred hhHHHHHHhhcCCCCChH-hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--hhhHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK--VGNVVRDV 80 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~-~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~--~~~~~~~v 80 (442)
+-..|-.+|..+|..-++ ....|..+.. .|+.+.|...|+|++..+|.++..-+....+...... ....+...
T Consensus 183 al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 183 ALKYYKKALRINPACKADVRIGIGHCFWK----LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHhcCcccCCCccchhhhHHHh----ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 345677777776632111 1234433333 5667778888888888888887766665554443321 22346677
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh---HHHHHHHHHH----------HHHHHHHHhhc
Q 013489 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST---FEEYLDLFLT----------RIDGLRRRILF 147 (442)
Q Consensus 81 ~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~---~~~~~~~~~~----------~~~~l~rr~~~ 147 (442)
+.+|....|.++.+-...+..+. ..++...+-.+.+-++...... ...|+.+-.. ..-|.......
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 78887766665555444444332 2466666766666666543221 1112211111 11111111111
Q ss_pred cCc-cc---hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhHHHHH
Q 013489 148 SGE-VE---GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG---KDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 148 ~~~-~~---~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~---~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
.+. +- ..+.+...+..++.+..+++..+...+..++.....+.++...+ ...+.|..+..+++...|..++.|
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 111 00 11223333455666777776666655555555444444443331 135788888999998888888999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Q 013489 221 QSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 221 ~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
+..+.+... ++...+...|.+|+
T Consensus 418 l~laql~e~-~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 418 LELAQLLEQ-TDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHH
Confidence 888887654 44444466666666
No 134
>PLN03077 Protein ECB2; Provisional
Probab=97.96 E-value=0.0028 Score=69.13 Aligned_cols=110 Identities=10% Similarity=0.047 Sum_probs=69.1
Q ss_pred HHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch--hHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 165 QRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG--AMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 165 ~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~--~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
++|+.++...... ..+....+...+......| .++.|..+|+.+...++ .+...+...+++..+.|++++|..+++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4555555544332 1122223333344445556 78888888888885422 234677888888888888888888888
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 242 ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
..- +.+ ...+|...+.-.+.||+++--+.+.++.
T Consensus 650 ~m~---~~p--d~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 650 KMP---ITP--DPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HCC---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 752 222 2467888888888889887666555443
No 135
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.95 E-value=0.0043 Score=66.00 Aligned_cols=262 Identities=11% Similarity=0.026 Sum_probs=159.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDF-PVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~-p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
+|...|+..+..... + +...|...+......|....+..++..++... ..+..++...+..+.+. +..+.+..+|
T Consensus 207 ~A~~lf~~M~~~g~~--p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~~~A~~vf 282 (697)
T PLN03081 207 EAFALFREMWEDGSD--A-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC-GDIEDARCVF 282 (697)
T ss_pred HHHHHHHHHHHhCCC--C-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC-CCHHHHHHHH
Confidence 567788888766432 1 33456666776677888899999998887753 44667777778776654 4567789999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH------------HHHHHHhhcc
Q 013489 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRI------------DGLRRRILFS 148 (442)
Q Consensus 82 erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~-~~~~~~~~~~~~~------------~~l~rr~~~~ 148 (442)
++.. +.+...|...|..+-+ .+..+++..+|++....+.. +..-|..+...++ ..+.+.-...
T Consensus 283 ~~m~---~~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 283 DGMP---EKTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HhCC---CCChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 8763 3355788888875554 68889999999998765432 2222222221111 0010110000
Q ss_pred Cc--cchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--chhHHHHHHHHH
Q 013489 149 GE--VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYI 224 (442)
Q Consensus 149 ~~--~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--~~~~~~~w~~~~ 224 (442)
+. .+...+.---.+.++.|..++..... +....|...+.-+...| +.+.|.++|++++.. .|+ ...+...+
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G-~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll 433 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG-RGTKAVEMFERMIAEGVAPN-HVTFLAVL 433 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Confidence 00 00000100001223556666654432 23346777788778888 899999999998876 455 44566777
Q ss_pred HHHHhcccHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 225 SMEIELDHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~~-~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
......|.++.|..+|+.+... .+.+ ....|...+..--..|.+++..+.+++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 7777788999999999988752 1111 123455566666667777666555544
No 136
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.93 E-value=1.5e-05 Score=47.75 Aligned_cols=32 Identities=44% Similarity=0.949 Sum_probs=23.0
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013489 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (442)
Q Consensus 37 g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~ 68 (442)
|+++.++.+|+|+|..+|.++.+|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35667777777777777777777777777653
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.93 E-value=0.0028 Score=66.30 Aligned_cols=81 Identities=11% Similarity=0.084 Sum_probs=61.4
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
++|+......+...+.........+.....+| ..++|..+|++++..+|+....|+.|....+..|+.+.|...|++|+
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g-~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIG-QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333334444555666676777788 89999999999999888888999999999999999999999999998
Q ss_pred hc
Q 013489 245 SK 246 (442)
Q Consensus 245 ~~ 246 (442)
..
T Consensus 216 ~~ 217 (694)
T PRK15179 216 DA 217 (694)
T ss_pred Hh
Confidence 74
No 138
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.01 Score=59.86 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHcCCCcHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL----KVGNVVRDVYSRATKNCPWVGEL 94 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~----~~~~~~~~v~erAl~~~p~s~~l 94 (442)
.......-+.+..+.|..+.|..+|...|..||.+......|...+.... ...+....+|+.--..+|.+..+
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~ 113 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch
Confidence 34445555666677888899999999999999998888888877662211 23455778888777788876433
No 139
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.92 E-value=5.7e-05 Score=77.20 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=39.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccC------------CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDV------------GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~------------G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+......++|||||||+.+++++|..+|..+ +.|..+. .++.+|||||+|.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~ 231 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFR 231 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeC
Confidence 3445667899999999999999999999975 2333333 3456899999995
No 140
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.91 E-value=0.00019 Score=57.52 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=77.8
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc---C-ChhhHHHHHHHHHhcCC---------CCHHHHHHHHHHHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---G-DPGRVQLLYERAITDFP---------VSSDLWLDYTQYLD 68 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~---g-~~~~~~~lyERal~~~p---------~~~~lW~~Y~~~l~ 68 (442)
...|..||..|..... ..+-++.|..||.|.... | .-.....++|||+..+- .-..+|+.|+.+..
T Consensus 2 ~~~r~~~e~~i~~~~~-~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~ 80 (125)
T smart00777 2 EQQRQAFEQELQDLYE-GDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCD 80 (125)
T ss_pred hHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcC
Confidence 3578999999943221 123478899999998743 3 33467888999998643 33479999998742
Q ss_pred HhcchhhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 013489 69 KTLKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (442)
Q Consensus 69 ~~~~~~~~~~~v~erAl~~--~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~ 118 (442)
+ ...+|.-..++ .-....+|..|+.++|. .+....+..||+.
T Consensus 81 ----d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 81 ----E---PRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred ----C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Confidence 2 34677776663 24567899999998987 6888999999875
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0074 Score=64.19 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=133.1
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH------
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG------ 92 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~------ 92 (442)
++.+.++|...+......++++.+..+.+.++..+|....+|...+-....... .+.+.-+ +++..++...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhh--hhhhhcccccchhHHH
Confidence 466889999999988899999999999999999999999998877764433322 2223223 5555554332
Q ss_pred -------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHH--HHHHHHHHHHHHHHHhhccCccchhhhH
Q 013489 93 -------------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (442)
Q Consensus 93 -------------~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (442)
......+. +....+..+++..+|++++...+.++.. .+..+..- .++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~-~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-----------------~dL 165 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAE-AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-----------------EDK 165 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----------------hhH
Confidence 33333333 3333577788999999999887654321 11111100 011
Q ss_pred HHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhcccHHH
Q 013489 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINE 235 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--~~~~~~~w~~~~~~e~~~g~~~~ 235 (442)
......+.+|+..+ +. ......+...|..+......+++-=-.+.++++.. +..-..+|.-........++++.
T Consensus 166 ~KA~~m~~KAV~~~---i~-~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 166 EKAITYLKKAIYRF---IK-KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHH---Hh-hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 22223333333221 10 11112233333333333332445444555555554 44445566666666666678889
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 236 ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
+-.+++.+|.. .++.......--..|-..|++-..+++++.
T Consensus 242 ~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 242 VIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHHH
Confidence 99999999973 333333444444455566776555555554
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.014 Score=55.51 Aligned_cols=219 Identities=13% Similarity=0.058 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH--------------------
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY-------------------- 81 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~-------------------- 81 (442)
+.......++.+...|+...+...||.+...+|.+..----|+-++...++ -+.+..+-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~-~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG-CEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC-HhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 667788888888888888888888888888888877766667665554332 22233333
Q ss_pred --------------HHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhc
Q 013489 82 --------------SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILF 147 (442)
Q Consensus 82 --------------erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~ 147 (442)
+++++.-|.+..-++.--. +-...+..+++--.|..|...-|.....|..++..|+
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~-lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL--------- 379 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGR-LLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL--------- 379 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccH-HHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH---------
Confidence 3333333333222222111 1111233333333344443333332333333333332
Q ss_pred cCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 013489 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (442)
Q Consensus 148 ~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e 227 (442)
-...++++.-.|...+. .+......+.++-.-.-++.-.+ -++|.++++++|+..|.+...-...+++.
T Consensus 380 --------A~~~~kEA~~~An~~~~-~~~~sA~~LtL~g~~V~~~dp~~--rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 380 --------AQKRFKEANALANWTIR-LFQNSARSLTLFGTLVLFPDPRM--REKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred --------hhchHHHHHHHHHHHHH-HhhcchhhhhhhcceeeccCchh--HHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 11122222222222211 11111111111111111111122 46899999999999999888777778877
Q ss_pred HhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 013489 228 IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (442)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~ 266 (442)
...|....+.+++++++.. ++ |. .+.....+|-.-
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~-~~-D~--~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLII-FP-DV--NLHNHLGDIMRA 483 (564)
T ss_pred HhhCccchHHHHHHHHHhh-cc-cc--HHHHHHHHHHHH
Confidence 7778888888999998862 22 22 234444455444
No 143
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.90 E-value=0.0002 Score=59.79 Aligned_cols=93 Identities=9% Similarity=-0.073 Sum_probs=80.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|..+|...|. +...|...+......|+++.+...|++++..+|.++..|......+.. .+..+.+...|.
T Consensus 42 ~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~~ 116 (144)
T PRK15359 42 RAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAFQ 116 (144)
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 356678888877776 888999999999999999999999999999999999999999987764 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLL 100 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~ 100 (442)
+|+...|.....|.....
T Consensus 117 ~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 117 TAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHhCCCChHHHHHHHH
Confidence 999999999888866443
No 144
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0063 Score=59.93 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+.....-+|......|+..+...+=-+.+...|..+--|..-..|..--+ ....++.-|.+|+..-|.-+.-|+.|...
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-k~seARry~SKat~lD~~fgpaWl~fghs 355 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-KYSEARRYFSKATTLDPTFGPAWLAFGHS 355 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-CcHHHHHHHHHHhhcCccccHHHHHHhHH
Confidence 44444444444445555544444445556666776667776666555332 33456777777777666666677776654
Q ss_pred HHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCch
Q 013489 102 LERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~ 179 (442)
+-. .+..+.+...|.+|-+.-+. ....|+.+.-.+ ...++.|..++..++.-.|
T Consensus 356 fa~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-----------------------t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 356 FAG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-----------------------TNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred hhh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-----------------------hccHHHHHHHHHHHHhcCC
Confidence 432 23445555556555543222 122333222111 1334555566655554444
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-------hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013489 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-------AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (442)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~-------~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (442)
..+-+....+-+-...+ .+..|..+|+.++..-+ ....+|.......++.+.++.|...|++||.. .+.+
T Consensus 412 ~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~- 488 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKD- 488 (611)
T ss_pred CcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCc-
Confidence 33323333333334445 78899999999994421 23457888889999999999999999999973 2333
Q ss_pred hHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 253 SEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 253 ~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
+ ..+..-.-.-...|+++..-+.+
T Consensus 489 ~-~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 489 A-STHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred h-hHHHHHHHHHHHhcChHHHHHHH
Confidence 2 23322222223457765433333
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.88 E-value=1.1e-05 Score=71.98 Aligned_cols=53 Identities=19% Similarity=0.451 Sum_probs=49.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+...|||||+.+.++.+++..+|..||.|..+.++.|+.+|.++||+||+|.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~ 151 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFS 151 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecc
Confidence 44569999999999999999999999999999999999999999999999996
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.88 E-value=2.9e-05 Score=74.92 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
......+|||+|||++++...|+++|..||.|...+|......++..+||||+|.
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~ 338 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFE 338 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEe
Confidence 3444567999999999999999999999999999998775445666699999984
No 147
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.88 E-value=0.0026 Score=67.81 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=120.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHH
Q 013489 32 YEQSSGDPGRVQLLYERAITDFPVSS-DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (442)
Q Consensus 32 ~e~~~g~~~~~~~lyERal~~~p~~~-~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~ 110 (442)
..-..|++..+...|+.++..+|.+. .+. +++.++... +..+.+...+++++...|.....-...+. +....++.+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~-ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAAR-AYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHH-HHHHcCCHH
Confidence 34568999999999999999999995 444 777766544 44567999999999433433333332232 334468889
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHH
Q 013489 111 EISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAH 190 (442)
Q Consensus 111 ~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~ 190 (442)
.+..+|++++...+.+...+..+...+. +. ...++|+..+.......+. ...++..+.
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~-----------------~~----~q~~eAl~~l~~l~~~dp~-~~~~l~lay 177 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQA-----------------DA----GRGGVVLKQATELAERDPT-VQNYMTLSY 177 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHh-----------------hc----CCHHHHHHHHHHhcccCcc-hHHHHHHHH
Confidence 9999999999988876555543332221 11 2234444444444333332 223344455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHH
Q 013489 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (442)
Q Consensus 191 ~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~ 240 (442)
+....+ +...|.+.|++++..+|++.+++..|+......|-...|-.+.
T Consensus 178 L~~~~~-~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 178 LNRATD-RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HHHhcc-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 554455 5556999999999999999999999999888887655444443
No 148
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=1.7e-05 Score=76.28 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=43.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.|||.||+..++..+|.++|+.||.|.+|+++.+ ..| ++|| ||+|.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~ 123 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFE 123 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeC
Confidence 3999999999999999999999999999999999 577 9999 99996
No 149
>PLN03077 Protein ECB2; Provisional
Probab=97.87 E-value=0.0038 Score=68.14 Aligned_cols=113 Identities=5% Similarity=-0.125 Sum_probs=71.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.+++.|+..++.... .+...|...++...+.|+++.|..+|++... .+...|...+.-+... +..+.+..+|.
T Consensus 407 ~a~~l~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~-g~~~eA~~lf~ 479 (857)
T PLN03077 407 VGVKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLN-NRCFEALIFFR 479 (857)
T ss_pred HHHHHHHHHHHhCCC---cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHC-CCHHHHHHHHH
Confidence 467778888766432 1455788888888888999999999988654 3456787777655543 34466788888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
+.+..++-+...+...+..+-+ .+..+..+.++..++..+
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~-~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACAR-IGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhh-hchHHHhHHHHHHHHHhC
Confidence 8877553333444444443332 344455555555555433
No 150
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.87 E-value=0.0022 Score=62.08 Aligned_cols=203 Identities=9% Similarity=-0.088 Sum_probs=122.8
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHH
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELW 95 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW 95 (442)
||+..-.|...+.+....|++..+...|.++....|.+. ..+.-.+.... ..++.+.+..++++++...|.+...|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW-IAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 344555666666666677888888888888888777553 33332222222 33456778999999999999888776
Q ss_pred HH---HHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHh
Q 013489 96 VR---SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (442)
Q Consensus 96 ~~---y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~ 172 (442)
.. +.. +....+....+..++.......+..+.....+ .. +. ...+.+++|...+.
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--a~---~~----------------~~~G~~~~A~~~~~ 138 (355)
T cd05804 81 KLHLGAFG-LGDFSGMRDHVARVLPLWAPENPDYWYLLGML--AF---GL----------------EEAGQYDRAEEAAR 138 (355)
T ss_pred HHhHHHHH-hcccccCchhHHHHHhccCcCCCCcHHHHHHH--HH---HH----------------HHcCCHHHHHHHHH
Confidence 62 222 11112333444444443222222211111000 00 00 00122333444444
Q ss_pred hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH----HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM----LEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~----~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..+...+....++..++.+....| +++.|..++++++...|.. ...|..++.+....|+++.|..+|++++.
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~~g-~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEMQG-RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 443334444557777888888888 8999999999999885432 24677888899999999999999999874
No 151
>smart00361 RRM_1 RNA recognition motif.
Probab=97.86 E-value=2.2e-05 Score=56.60 Aligned_cols=37 Identities=30% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeeCCCC--CCCcceEEEEee
Q 013489 405 YEDLRRFFS----DVGGVSSIR-ILHDKFT--GKSRVVQSDIYT 441 (442)
Q Consensus 405 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~~fv~f~ 441 (442)
+++|+++|+ .||.|.+|. ++.++.+ |+++|||||+|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~ 45 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFE 45 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEEC
Confidence 578899998 999999995 7777666 999999999995
No 152
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.83 E-value=0.019 Score=57.62 Aligned_cols=233 Identities=16% Similarity=0.123 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+.-.|.-|.-.-+...+++.++..|.+||...|+|..+|.+... +..+.++.+-...+-.+-++..|....-|..|+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl-LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL-LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44478888887777778888888888888888888888888764 33344454545566666677778777888888763
Q ss_pred HHHccCCHHHHHHH---HHHHHhCChhhH-HHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 013489 102 LERSRASEEEISTV---FEKSLLCAFSTF-EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (442)
Q Consensus 102 le~~~~~~~~~~~i---~~~al~~~~~~~-~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~ 177 (442)
.-. .++...+..+ |++....+++.. -......+.....+ .-.+.++.|.+.+...-..
T Consensus 153 ~~L-~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~-----------------~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 153 QHL-LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL-----------------IEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-----------------HHcccHHHHHHHHHhhhhH
Confidence 332 3444444433 333332222211 11111111111111 0012244454444221111
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhc----------
Q 013489 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI-ELDHINEARSIYKRCYSK---------- 246 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~-~~g~~~~ar~i~~ral~~---------- 246 (442)
.-..+.+-..-+.++..++ .++.|..+|...+..+|++...+..+....- ..+..+....+|...-+.
T Consensus 215 i~Dkla~~e~ka~l~~kl~-~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLG-QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HHHHHHHhhhHHHHHHHHh-hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 1112223444577888889 8999999999999999998875555544442 223444454666665432
Q ss_pred ---ccCCCChHHHHHHHHHHHHHhCCHhhHH
Q 013489 247 ---RFTGTGSEDICHAWLRFEREYGTLEDFD 274 (442)
Q Consensus 247 ---~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (442)
.+..+.-..+...|+.-+-..|-+.-+.
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 0111222356667777777776554433
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.025 Score=52.18 Aligned_cols=219 Identities=9% Similarity=0.100 Sum_probs=125.1
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc---HHHHHHHH--HHHHHccCCHHH
Q 013489 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSL--LSLERSRASEEE 111 (442)
Q Consensus 37 g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s---~~lW~~y~--~~le~~~~~~~~ 111 (442)
..++++..+|-..+...|...++-+...++...- +..+.+..|..--+. -|.- ..+...+- +-+ ...|-.+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy-m~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY-MAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH-HHhhhhhH
Confidence 3577888888888888888888888777765543 344555555443333 2321 11111111 100 01344566
Q ss_pred HHHHHHHHHhCChh---hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHH
Q 013489 112 ISTVFEKSLLCAFS---TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (442)
Q Consensus 112 ~~~i~~~al~~~~~---~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (442)
++.+|......+-- .....+.+|..- .|| ..+++-|..+.... ..+..+.|-.+|
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~t-----------------reW---~KAId~A~~L~k~~--~q~~~~eIAqfy 183 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQAT-----------------REW---EKAIDVAERLVKLG--GQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHh-----------------hHH---HHHHHHHHHHHHcC--CccchhHHHHHH
Confidence 77777765542211 111122222110 122 23333343333211 112233343333
Q ss_pred ---HHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 013489 189 ---AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (442)
Q Consensus 189 ---a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~ 265 (442)
|+-..... ++++|+.++.++++.+|+.+..=+...+++...|+++.|...+++++.. ..+....|......--+
T Consensus 184 CELAq~~~~~~-~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 184 CELAQQALASS-DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHH
Confidence 43333334 7899999999999999999888888899999999999999999999874 33444455555555556
Q ss_pred HhCCHhhHHHHHHhhchh
Q 013489 266 EYGTLEDFDHSVQKVTPR 283 (442)
Q Consensus 266 ~~G~~~~~~~~~~~~~~~ 283 (442)
..|.+++....+.+++..
T Consensus 261 ~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 261 QLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhCCHHHHHHHHHHHHHc
Confidence 668888777666665443
No 154
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.028 Score=51.83 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=139.1
Q ss_pred hHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH--HHHHHH--H-HHHHHhcchhhHHHH
Q 013489 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS--DLWLDY--T-QYLDKTLKVGNVVRD 79 (442)
Q Consensus 5 r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~--~lW~~Y--~-~~l~~~~~~~~~~~~ 79 (442)
-..|=..+... ++.++.-....++-...|..++++.+.+-.+..-.... .+-.-+ . +|+. .+..+.+..
T Consensus 55 vdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~--aGl~DRAE~ 128 (389)
T COG2956 55 VDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA--AGLLDRAED 128 (389)
T ss_pred HHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH--hhhhhHHHH
Confidence 33444444433 44788888888888889999999999887765422222 111110 0 1111 112233444
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHH
Q 013489 80 VYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (442)
Q Consensus 80 v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~ 159 (442)
+|..-+..--.-...-...+. ++.....-+.+-.+-++..+.+...+..-+.. .||+... -..
T Consensus 129 ~f~~L~de~efa~~AlqqLl~-IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq--fyCELAq--------------~~~ 191 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLN-IYQATREWEKAIDVAERLVKLGGQTYRVEIAQ--FYCELAQ--------------QAL 191 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHcCCccchhHHHH--HHHHHHH--------------HHh
Confidence 444433311111122222222 33333444455555555444444432222222 2332221 112
Q ss_pred HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHhcccHHHHHH
Q 013489 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARS 238 (442)
Q Consensus 160 ~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~-~w~~~~~~e~~~g~~~~ar~ 238 (442)
....+++|...+.+++..++.+++.-+...+++...| ++..|.+.|+++++.+|..+. +-..........|+.+....
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g-~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKG-DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc-chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3355666777777777777888888888999999999 999999999999999999875 56666667778899999999
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHhCCH
Q 013489 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (442)
Q Consensus 239 i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~ 270 (442)
.+.+++.. .+...++ ..-+--.|...|..
T Consensus 271 fL~~~~~~-~~g~~~~--l~l~~lie~~~G~~ 299 (389)
T COG2956 271 FLRRAMET-NTGADAE--LMLADLIELQEGID 299 (389)
T ss_pred HHHHHHHc-cCCccHH--HHHHHHHHHhhChH
Confidence 99999974 3433343 33333445555653
No 155
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.80 E-value=3.3e-05 Score=72.80 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=44.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeeCC-CCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDK-FTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~-~~g~~~g~~fv~f~ 441 (442)
+.++|++||||+|.+.+++++.+.|++.+ .|.+|-+..++ .+.|+||||||+|-
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe 216 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYE 216 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEee
Confidence 45678999999999999999999999888 45666665543 35789999999984
No 156
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.80 E-value=3.3e-05 Score=77.94 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGG--VSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+|||+|||.++++++|+++|+.||. |..+++... .++ .+|||||+|.
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~-~~~-~~~~gfVeF~ 444 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK-DNE-RSKMGLLEWE 444 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC-CCC-cceeEEEEcC
Confidence 3469999999999999999999999998 888887654 344 5899999995
No 157
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.79 E-value=0.0017 Score=67.93 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~l 102 (442)
.+.....+..+...|..+.+..++++++...|.+...+..|+.-|..... .+.+...+++++..-|.+.......+..|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34444455555555666666666666666666666666666665554332 34456666666666666655555555434
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 013489 103 ERSRASEEEISTVFEKSLL 121 (442)
Q Consensus 103 e~~~~~~~~~~~i~~~al~ 121 (442)
.. .+..+++..+|++++.
T Consensus 165 ~~-~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 165 DE-IGQSEQADACFERLSR 182 (694)
T ss_pred HH-hcchHHHHHHHHHHHh
Confidence 33 4555556666666554
No 158
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.79 E-value=3.4e-05 Score=70.45 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=43.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+....++|||+|-..+++.+|+++|.+||.|.+++++.. +|+|||+|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ft 272 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFT 272 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeeh
Confidence 3455669999999999999999999999999999998876 479999996
No 159
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.78 E-value=3.5e-05 Score=72.25 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=46.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeeCCCCCCCcceEEEEeeC
Q 013489 392 CTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRVVQSDIYTL 442 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~~fv~f~~ 442 (442)
+.|||.|+|+++.+.+|+++|. ..|.|.-|.+..| .+||+||+|.|+|++
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~ 95 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKD 95 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeC
Confidence 4699999999999999999998 6899999999999 799999999999974
No 160
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=79.23 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=46.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.|.|.|||+..+-.+++.+|..||.|.+|+|+.-...+.+||||||+|-
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFL 663 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeecc
Confidence 358999999999999999999999999999999987566778999999984
No 161
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.71 E-value=9.2e-05 Score=71.71 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=48.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..-.+++||++|+..+...+|+.+|+.||.|+-..+|.+..+.-.|+||||+..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMS 455 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMS 455 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEec
Confidence 455679999999999999999999999999999999998778888999999864
No 162
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.71 E-value=0.00071 Score=54.80 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhh--hhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhcccHH
Q 013489 159 LIRETFQRASDYLSE--QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHIN 234 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~--~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--~~~~~~~w~~~~~~e~~~g~~~ 234 (442)
.+..++++|+..+.. .+.+....+++|+.||++. +.++.+|.-+... .-..+.+|..|+.+....|++.
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB-------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc-------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 344667777776643 3445566788999998542 2889999999887 3455779999999999999999
Q ss_pred HHHHHHHHHH
Q 013489 235 EARSIYKRCY 244 (442)
Q Consensus 235 ~ar~i~~ral 244 (442)
+|..||+.+|
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 163
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.71 E-value=6.7e-05 Score=75.92 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=38.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDV--GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+|||+|||.++++++|+++|+.| |.|.+|.++ +|||||+|.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~ 277 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFE 277 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeC
Confidence 4589999999999999999999999 999998765 369999995
No 164
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.67 E-value=1.3e-05 Score=77.49 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=54.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 383 GRTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 383 ~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+.++.+|||+-.|+..++.-+|.+||+.+|.|.+|+++.|+.+++++|.|||+|.
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~ 229 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFC 229 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEe
Confidence 34445678899999999999999999999999999999999999999999999999994
No 165
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.67 E-value=0.00087 Score=55.00 Aligned_cols=81 Identities=9% Similarity=-0.034 Sum_probs=65.7
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
++.|...+.......+....+|...+.+....+ +++.|..+|++++..+|+...+|.....+....|+.+.|...|+++
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK-EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444443334556678888899888888 8999999999999999999999999999888899999999999999
Q ss_pred Hh
Q 013489 244 YS 245 (442)
Q Consensus 244 l~ 245 (442)
+.
T Consensus 112 l~ 113 (135)
T TIGR02552 112 IE 113 (135)
T ss_pred HH
Confidence 97
No 166
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.63 E-value=9.1e-05 Score=44.18 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 013489 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~ 228 (442)
+++.||.+|++++..+|.+..+|+.|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 6889999999999999998999999999985
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.00036 Score=49.25 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.+......| +++.|..+|+.++..+|++..+|..+..+....|+++.|...|++++..
T Consensus 3 ~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355667778 9999999999999999999999999999999999999999999999973
No 168
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.62 E-value=9.8e-05 Score=64.66 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+-+.+...||.|.|..+++.+.|...|..|-.-...++++|+.||+++|||||.|.
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 33456789999999999999999999999988888899999999999999999995
No 169
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.58 E-value=0.00014 Score=62.98 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRR----FFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.|+||.||+..+..++|+. +|++||.|.+|... .|++.||-|||.|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk 60 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFK 60 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEec
Confidence 4999999999999999888 99999999887543 37899999999996
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.0018 Score=48.25 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
.|...+......|+++.+..+|++++...|.+..+|..++..+... ++.+.+...|++++...|....+|...+..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3555566666788999999999999999999998888888776643 456778999999999999888888877764443
Q ss_pred ccCCHHHHHHHHHHHHhCC
Q 013489 105 SRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~~ 123 (442)
.++.+.+...|.+++...
T Consensus 81 -~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 -LGKYEEALEAYEKALELD 98 (100)
T ss_pred -HHhHHHHHHHHHHHHccC
Confidence 566778888888877543
No 171
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.57 E-value=0.011 Score=53.53 Aligned_cols=175 Identities=13% Similarity=-0.050 Sum_probs=105.7
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH---HHHHHHHHHHh-------cc
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKT-------LK 72 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~l---W~~Y~~~l~~~-------~~ 72 (442)
.+...|+..+...|. ++.....|...+......|+++.+...|++++..+|.++.+ |..-....... .+
T Consensus 51 ~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 51 EAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 456778888877764 22234577888888888999999999999999999988763 33322222211 13
Q ss_pred hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
..+.+...|++++...|.+...|..+...... ........ ...-.++...
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~--------~~~~~~~~-------~~~a~~~~~~--------------- 179 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAPDAKKRMDYL--------RNRLAGKE-------LYVARFYLKR--------------- 179 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHc---------------
Confidence 45678999999999999987777554432111 00000000 0000011000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~ 215 (442)
.++......|++++... .+.+...+.|...+..+...| +.+.|..+++.+...+|+
T Consensus 180 --g~~~~A~~~~~~al~~~----p~~~~~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 180 --GAYVAAINRFETVVENY----PDTPATEEALARLVEAYLKLG-LKDLAQDAAAVLGANYPD 235 (235)
T ss_pred --CChHHHHHHHHHHHHHC----CCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 12222223333333321 112334578888888888889 999999999888877763
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.55 E-value=0.00047 Score=49.29 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p 89 (442)
+...|...+......|+++.+...|+++|..+|.++.+|..........++....+...|++|+...|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888888888888888888899999888888888888887666443256678888888887665
No 173
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.54 E-value=0.00012 Score=42.68 Aligned_cols=30 Identities=23% Similarity=0.577 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 013489 198 DMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~ 228 (442)
.+++||.||++.+..+|+ +..|+.|+.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 478889999998888865 788999988885
No 174
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.54 E-value=0.013 Score=62.38 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=94.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 46 YERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 46 yERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
|-.+|...|.+-..-...+..+. ..+..+.+..+|+|+++.-|....+-..|+.++... +.+.+...+.+|+..-..
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHh
Confidence 33333334444344444444333 345667799999999999999999989988877765 889999999999965332
Q ss_pred --hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHH---------HHHHHHHHhhhhcCchhhHHHHHHHHHHHHH
Q 013489 126 --TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET---------FQRASDYLSEQMKNTDGLLRLYAYWAHLEQS 194 (442)
Q Consensus 126 --~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~---------~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~ 194 (442)
.+.....+|..+|.+.- .++..+-.. |.++..+ ...+|..| ..
T Consensus 182 ~kq~~~~~e~W~k~~~~~~------------~d~d~f~~i~~ki~~~~~~~~~~~~----------~~~l~~~y----~~ 235 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNS------------DDFDFFLRIERKVLGHREFTRLVGL----------LEDLYEPY----KA 235 (906)
T ss_pred hhcchHHHHHHHHHHhcCc------------ccchHHHHHHHHHHhhhccchhHHH----------HHHHHHHH----hh
Confidence 45566778877764431 111111111 2222222 12244444 23
Q ss_pred cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 013489 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (442)
Q Consensus 195 ~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~ 228 (442)
.. +++.+-.++..+|...|++...-...+++.+
T Consensus 236 ~~-~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LE-DWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hh-hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33 7889999999999998877665556666554
No 175
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.54 E-value=0.058 Score=52.16 Aligned_cols=208 Identities=12% Similarity=-0.024 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH----HHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG----ELWVR 97 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~----~lW~~ 97 (442)
....+..........|+++.+...|++++...|.+...+..+...+.. .+..+.+...+++++...|... ..|..
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 333344444455678889999999999999999998888888776664 3456778889999998776432 24445
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCh--hhHHHHHHH-HHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhh
Q 013489 98 SLLSLERSRASEEEISTVFEKSLLCAF--STFEEYLDL-FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQ 174 (442)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~~al~~~~--~~~~~~~~~-~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~ 174 (442)
.+. +....++.+.+..+|++++...+ ..+...... +..+ +............|.. ....... .
T Consensus 192 la~-~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~g~~~~~~~w~~---~~~~~~~----~ 257 (355)
T cd05804 192 LAL-FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW------RLELAGHVDVGDRWED---LADYAAW----H 257 (355)
T ss_pred HHH-HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH------HHHhcCCCChHHHHHH---HHHHHHh----h
Confidence 555 33346888889999998874433 112111111 1111 1111010100011111 1111111 1
Q ss_pred hcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-h---h-----HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS-G---A-----MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~-~---~-----~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.. .+.........+......+ +.+.|..+++.+.... . . .+.+.+-.+-.....|+.+.|..++..|+.
T Consensus 258 ~~-~~~~~~~~~~~a~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 258 FP-DHGLAFNDLHAALALAGAG-DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred cC-cccchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 0111112223555556667 8999999998887642 1 1 123444444555567999999999999986
Q ss_pred c
Q 013489 246 K 246 (442)
Q Consensus 246 ~ 246 (442)
.
T Consensus 336 ~ 336 (355)
T cd05804 336 D 336 (355)
T ss_pred H
Confidence 3
No 176
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0012 Score=60.51 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=123.8
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
|-..+...|+..+. .+.+.-....-..-..|.++..+|-..|..+|.++.+-..-+...+. .+..+.+.++|.+
T Consensus 242 AekqlqssL~q~~~-----~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 242 AEKQLQSSLTQFPH-----PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQEDALQLYKL 315 (478)
T ss_pred hHHHHHHHhhcCCc-----hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHHHHHHHHH
Confidence 44566777777664 33444333333344578889999999999999998887777765543 2344567888888
Q ss_pred HHHcCCCcHH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH-----HH----HHHHHhhccCc
Q 013489 84 ATKNCPWVGE----LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR-----ID----GLRRRILFSGE 150 (442)
Q Consensus 84 Al~~~p~s~~----lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~-----~~----~l~rr~~~~~~ 150 (442)
++..-|...+ |=..|. ..++.+.+...|.|.|+.+..+.+.|..+-++. +| +..|-......
T Consensus 316 vlk~~~~nvEaiAcia~~yf-----Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~ 390 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYF-----YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ 390 (478)
T ss_pred HHhcCCccceeeeeeeeccc-----cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC
Confidence 8887665432 222221 246667788888888887766555554444331 11 11121111110
Q ss_pred ----cchhhhHH---HHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHH
Q 013489 151 ----VEGVLDYS---LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA 219 (442)
Q Consensus 151 ----~~~~~~~~---~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~ 219 (442)
.+.|-++. .-...|.-|..++..++.+++...+.+...+-++...| +++.||.+++.+-...|+..+.
T Consensus 391 ~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G-~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 391 PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG-DILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC-chHHHHHHHHHhhhhCcccccc
Confidence 01111100 01123444555555555555666678888898999999 9999999999999988886653
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.001 Score=47.52 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD-HINEARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g-~~~~ar~i~~ral~ 245 (442)
.+|...+......+ +++.|...|.+++..+|+++.+|..........| ++..|...|++|+.
T Consensus 4 ~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 47888888888888 9999999999999999999999999999999999 79999999999996
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.45 E-value=0.071 Score=54.63 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHhchhHHHHHHHHHHHHHhcccHH
Q 013489 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS--ARGVWERLLKISGAMLEAWQSYISMEIELDHIN 234 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~--ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~ 234 (442)
...+++.+++|...+..++.-+|..+......+.+....| +... .|.++..+++.+|.+.+.|.......+..|+.+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 3345566677777766666656666677777888887777 5544 444899999999999999999999988999999
Q ss_pred HHHHHHHHHHhcccCCCCh
Q 013489 235 EARSIYKRCYSKRFTGTGS 253 (442)
Q Consensus 235 ~ar~i~~ral~~~~~~~~~ 253 (442)
.|-.+|..|++ +....|
T Consensus 772 ~Aaecf~aa~q--Le~S~P 788 (799)
T KOG4162|consen 772 QAAECFQAALQ--LEESNP 788 (799)
T ss_pred HHHHHHHHHHh--hccCCC
Confidence 99999999986 344444
No 179
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00018 Score=69.24 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=47.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+|||.|++..++.+.|+.+|+.+|.|.+++|+.+ ..|+++|||||.|.
T Consensus 270 ~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs 319 (369)
T KOG0123|consen 270 GANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFS 319 (369)
T ss_pred ccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcC
Confidence 348999999999999999999999999999999999 79999999999996
No 180
>PLN03213 repressor of silencing 3; Provisional
Probab=97.44 E-value=0.00019 Score=68.52 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=33.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeC
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (442)
..+||||||++.+++++|+.+|+.||.|.+|.|++.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE 45 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT 45 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc
Confidence 469999999999999999999999999999999943
No 181
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.057 Score=51.93 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHH-HHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCH--hhHHH
Q 013489 199 MVSARGVWERLLKISGAMLEAWQSY-ISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL--EDFDH 275 (442)
Q Consensus 199 ~~~ar~i~~~~l~~~~~~~~~w~~~-~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~--~~~~~ 275 (442)
.+++.++|+++.-..|+... |.-+ +.+.++.|++++|..+|+.... .||.+. +.+.-.+...-+.|-. .++.+
T Consensus 642 ~ekai~y~ekaaliqp~~~k-wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedl--dclkflvri~~dlgl~d~key~~ 717 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSK-WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDL--DCLKFLVRIAGDLGLKDAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHHhcCccHHH-HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccch--HHHHHHHHHhccccchhHHHHHH
Confidence 47888889998888888666 5444 4466778999999999988654 565432 3344445555555533 34544
Q ss_pred HHHhhc
Q 013489 276 SVQKVT 281 (442)
Q Consensus 276 ~~~~~~ 281 (442)
-+++..
T Consensus 718 klek~e 723 (840)
T KOG2003|consen 718 KLEKAE 723 (840)
T ss_pred HHHHHH
Confidence 455543
No 182
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00047 Score=44.43 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~ 65 (442)
..|..++......|+++++..+|+++|..+|.++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999998764
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.018 Score=58.41 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=113.0
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSR----ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~----~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~ 158 (442)
++.+.-|.+...|..|++...... +....+..+|++|+...|.....+..+...+ ..+... .. .. ..++.
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~--~~~~~~-~~--~~-~~~l~ 401 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALAD--IVRHSQ-QP--LD-EKQLA 401 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HHHHhc-CC--cc-HHHHH
Confidence 344455777788888887544321 2256788999999998877544443332222 121111 11 00 01222
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHH
Q 013489 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~ 238 (442)
.......++.... ..+....++...+-.....| +++.|...+++++...|+ ...|..+..+....|+.+.|..
T Consensus 402 ~a~~~~~~a~al~-----~~~~~~~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 402 ALSTELDNIVALP-----ELNVLPRIYEILAVQALVKG-KTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHhhhcc-----cCcCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 3333333332220 12222356666666666666 999999999999999985 6788888999999999999999
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 239 i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.|.+|+. +.+..|...|..=+-| |-|+++|.-+.-
T Consensus 475 ~~~~A~~--L~P~~pt~~~~~~~~f---~~~~~~~~~~~~ 509 (517)
T PRK10153 475 AYSTAFN--LRPGENTLYWIENLVF---QTSVETVVPYLY 509 (517)
T ss_pred HHHHHHh--cCCCCchHHHHHhccc---cccHHHHHHHHH
Confidence 9999996 5666777666666666 667777765443
No 184
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.38 E-value=0.098 Score=52.67 Aligned_cols=215 Identities=14% Similarity=0.143 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Q 013489 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR 106 (442)
Q Consensus 27 ~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~ 106 (442)
..=++++.+.+.++.+..+|.+.|..+|++.+....|...+.......+.+..+|.+.-...|.+..+-..=+.++..
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~-- 300 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG-- 300 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc--
Confidence 334455566778899999999999999999988888877664222233445578888777777654433322332321
Q ss_pred CCH-HHHHHHHHHHHhCChh-hHHHHHHHHHH--HHHHHHHHhh------ccC-cc--------ch--hhhH--------
Q 013489 107 ASE-EEISTVFEKSLLCAFS-TFEEYLDLFLT--RIDGLRRRIL------FSG-EV--------EG--VLDY-------- 157 (442)
Q Consensus 107 ~~~-~~~~~i~~~al~~~~~-~~~~~~~~~~~--~~~~l~rr~~------~~~-~~--------~~--~~~~-------- 157 (442)
.++ +.+...+...++.|.+ ...+...++.. .++.+.+-+. .+. .. +. ..-|
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 111 2233333333333322 12223333321 1112221111 000 00 00 0000
Q ss_pred HHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHH
Q 013489 158 SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar 237 (442)
-...+.++.|..+++.+++..|+.+++++.-|++....| +++.|-.+++.+-..+..+.-+=..++.+-.+-+.++.|-
T Consensus 381 ~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAG-LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 112344566777777777777777777777777776666 7777777777777665443444445666666667777776
Q ss_pred HHHHHHH
Q 013489 238 SIYKRCY 244 (442)
Q Consensus 238 ~i~~ral 244 (442)
.+...-.
T Consensus 460 ~~~skFT 466 (700)
T KOG1156|consen 460 EVLSKFT 466 (700)
T ss_pred HHHHHhh
Confidence 6655543
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.37 E-value=0.00091 Score=47.14 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=49.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc
Q 013489 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (442)
Q Consensus 30 ~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s 91 (442)
+......|+++.+..+|+++|..+|.++..|..+...+... +..+.+...|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 34456688999999999999999999999999999887744 55677889999999988875
No 186
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.34 E-value=0.19 Score=50.92 Aligned_cols=217 Identities=16% Similarity=0.156 Sum_probs=132.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh-hH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS-----GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-NV 76 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~-----g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~-~~ 76 (442)
+|...|...|..+|. +...+..|....... .+......+|+..-..+|.+...=.-=+.|+. +... ..
T Consensus 56 eA~~~y~~Li~rNPd----n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~--g~~F~~~ 129 (517)
T PF12569_consen 56 EAEKIYRELIDRNPD----NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE--GDEFKER 129 (517)
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC--HHHHHHH
Confidence 577889999999886 787888888866322 24677788999888888875433222223222 1111 22
Q ss_pred HHHHHHHHHH-cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----ChhhH------HHHHHHHHHHHHHHHHH
Q 013489 77 VRDVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC-----AFSTF------EEYLDLFLTRIDGLRRR 144 (442)
Q Consensus 77 ~~~v~erAl~-~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~-----~~~~~------~~~~~~~~~~~~~l~rr 144 (442)
+.....+.++ .+| .+... +..+........-+..+++..+.. .+... ....-+|..++ +-..
T Consensus 130 ~~~yl~~~l~KgvP---slF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~--lAqh 203 (517)
T PF12569_consen 130 LDEYLRPQLRKGVP---SLFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF--LAQH 203 (517)
T ss_pred HHHHHHHHHhcCCc---hHHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH--HHHH
Confidence 4444455554 334 33333 233433222233455555543321 00000 00111221110 0000
Q ss_pred hhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHH
Q 013489 145 ILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224 (442)
Q Consensus 145 ~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~ 224 (442)
. ...+.+++|+.+++.++...|+.++++..-|++....| ++..|-..++.+-..++.+=-+=...+
T Consensus 204 y-------------d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 204 Y-------------DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred H-------------HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 0 11234678888888888888889999999999999889 999999999999988776655666778
Q ss_pred HHHHhcccHHHHHHHHHHHHh
Q 013489 225 SMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+..+.|.++.|..++..-..
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcC
Confidence 888889999999988877543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.32 E-value=0.00083 Score=47.78 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=53.9
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
..|+++.|..+|++++..+|.+.++|+.++..+... +..+.+..++++++...|....+|....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 568899999999999999999999999999888755 5667899999999999998777766544
No 188
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.32 E-value=0.00086 Score=61.49 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=43.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+..|||+|||.++|-+++..+|+.||.|.+ |.|-++ ..|+.+|=|.|.|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~ 191 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYI 191 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEee
Confidence 457999999999999999999999997754 677787 56999999998885
No 189
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.30 E-value=0.0003 Score=40.99 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=22.6
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013489 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLD 68 (442)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~ 68 (442)
.+++|+.+|||.|..+| ++..|+.|+.|.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhc
Confidence 35788888888888775 4788888888753
No 190
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.29 E-value=0.015 Score=59.09 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
..|..+...++..+.-++.....|..+.-.....+ +...|-+.|.++++..|++.+.|..+.....+.|+-.+|+..+.
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle-k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE-KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh-hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 45666666666666556666778888777777777 89999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 242 RCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 242 ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
+|+.. . ..+-.||+.|+-.-.+.|..++.-.|..+.
T Consensus 578 EAlKc--n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 578 EALKC--N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhhc--C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99973 3 345579999999999999887776666543
No 191
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.28 E-value=0.0066 Score=58.84 Aligned_cols=95 Identities=19% Similarity=0.056 Sum_probs=79.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCH
Q 013489 30 LKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE 109 (442)
Q Consensus 30 ~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~ 109 (442)
+.-....|+++.++.+|++||..+|.+..+|...+..+.. .+..+.+...+++|+...|.....|......+. ..+..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCH
Confidence 3334567899999999999999999999999999887764 456677999999999999999999888776444 47889
Q ss_pred HHHHHHHHHHHhCChhh
Q 013489 110 EEISTVFEKSLLCAFST 126 (442)
Q Consensus 110 ~~~~~i~~~al~~~~~~ 126 (442)
+.+...|++++...+..
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999877664
No 192
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.23 E-value=0.23 Score=49.96 Aligned_cols=172 Identities=15% Similarity=0.111 Sum_probs=111.2
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh---hhHHHHHH
Q 013489 64 TQYLDKTLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF---STFEEYLD 132 (442)
Q Consensus 64 ~~~l~~~~~~~~~~~~v~erAl~~--------~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~---~~~~~~~~ 132 (442)
+.-+....+..+.+..+|++|++. +|.....-..+.. +....+.+.++..+|++|+...- ......+.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~-~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL-VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 333333446678899999999997 4544333333333 45557888999999999995321 11111111
Q ss_pred HHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013489 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (442)
Q Consensus 133 ~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~ 211 (442)
..+..+..+. ....++...+..+++|..+....+...++. ...+...+.++...+ .++.|..++.++++
T Consensus 284 ~~l~nLa~ly---------~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 284 ATLNNLAVLY---------YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-EYEEAKKLLQKALK 353 (508)
T ss_pred HHHHHHHHHH---------hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHH
Confidence 1111111111 011456677788889988887754444443 345555666666677 89999999999987
Q ss_pred hch--------hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 212 ISG--------AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 212 ~~~--------~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..- .-..+...+..+....|.++.|+.+|+.|++.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 721 22358888899999999999999999999976
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.21 E-value=0.00091 Score=43.09 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYIS 225 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~ 225 (442)
.+|..+++.+...| +++.|+.+|+++++.+|++..+|..++.
T Consensus 2 ~~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 36888899999999 9999999999999999999999988865
No 194
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.16 E-value=0.00039 Score=70.09 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=40.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
++|||||+|+.++++.||..+|..||.|.+|.++.. ||+|||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M 464 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKM 464 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEE
Confidence 579999999999999999999999999999987764 69999864
No 195
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.16 E-value=0.00038 Score=62.19 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=39.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+++||||.+.++.++|+..|..+|+|.+|+|++| |+||-|.
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d 120 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFD 120 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEe
Confidence 48999999999999999999999999999999987 9999885
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.16 E-value=0.39 Score=49.51 Aligned_cols=246 Identities=13% Similarity=0.089 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC--CCcHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--PWVGELWVRSLL 100 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~--p~s~~lW~~y~~ 100 (442)
..+|.-..-.....|.+..+...||+++...-.....|..+..-+...+.+ ..+..+.+..+..- |........-..
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-SKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-hHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 335555555555566677777777777766666667777776555444332 34566666666544 433333222222
Q ss_pred HHHHccCCHHHHHHHHHHHHhCChh-----hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH-HHHHHHHHHhhh
Q 013489 101 SLERSRASEEEISTVFEKSLLCAFS-----TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE-TFQRASDYLSEQ 174 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al~~~~~-----~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~-~~~~a~~~l~~~ 174 (442)
.+....+..+++...-.+++...-. ....+.-+-.+| ....+. .. .+ ..|. .-.++++.++.+
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y--~~~A~~----a~---~~--seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY--GFQARQ----AN---LK--SERDALHKKSLQALEEA 470 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH--HhHhhc----CC---Ch--HHHHHHHHHHHHHHHHH
Confidence 2333344444544545555541100 000111111111 010010 00 00 1111 123344455544
Q ss_pred hcCchhhHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013489 175 MKNTDGLLRLYAYWAHLE-QSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (442)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e-~~~~~~~~~ar~i~~~~l~~-~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (442)
+.-.++.+ ..++|..++ .... +++.|.....+++.. .+++...|.-++-+....+++..|..+.+.++.. ++.+
T Consensus 471 v~~d~~dp-~~if~lalq~A~~R-~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N- 546 (799)
T KOG4162|consen 471 VQFDPTDP-LVIFYLALQYAEQR-QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDN- 546 (799)
T ss_pred HhcCCCCc-hHHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhh-
Confidence 43223333 333444444 4455 899999999999999 6788899999999999999999999999999984 2221
Q ss_pred hHHHHHHHHHHHHHhCCHhhHHHHHHhhchhHHHHH
Q 013489 253 SEDICHAWLRFEREYGTLEDFDHSVQKVTPRLEELR 288 (442)
Q Consensus 253 ~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~~~~~~~ 288 (442)
-.+..--+..|..+|+. +.++..|.+.++-++
T Consensus 547 -~~l~~~~~~i~~~~~~~---e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 547 -HVLMDGKIHIELTFNDR---EEALDTCIHKLALWE 578 (799)
T ss_pred -hhhchhhhhhhhhcccH---HHHHHHHHHHHHHHH
Confidence 23455567778887775 456777777776665
No 197
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.13 E-value=0.0076 Score=58.39 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=76.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.|...|+.+|...|. +...|...+......|+++.+...++++|..+|.+...|...+..+.. .+..+.+...|+
T Consensus 20 ~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~~~ 94 (356)
T PLN03088 20 LAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 467789999988876 778899999988999999999999999999999999999998876664 456678999999
Q ss_pred HHHHcCCCcHHHHHH
Q 013489 83 RATKNCPWVGELWVR 97 (442)
Q Consensus 83 rAl~~~p~s~~lW~~ 97 (442)
+|+...|....++..
T Consensus 95 ~al~l~P~~~~~~~~ 109 (356)
T PLN03088 95 KGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999999987764333
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0022 Score=45.59 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=46.7
Q ss_pred HcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..| +++.|..+|++++..+|++.++++.++.+....|+++.|+.++++++..
T Consensus 3 ~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQG-DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTT-HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345 8999999999999999999999999999999999999999999999873
No 199
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.08 E-value=0.0016 Score=49.63 Aligned_cols=50 Identities=20% Similarity=0.054 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSD--VGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+||.|.|+|...+.++|.+++.. .|...-+-++.|..++.+.|||||-|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~ 53 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFT 53 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcC
Confidence 59999999999999999988774 456666788999889999999999885
No 200
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.03 E-value=0.00036 Score=64.64 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=49.1
Q ss_pred CCCCceEE-EcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAF-LSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~-v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.....++| |+++++.++.++|+.+|..||.|..++++.++.+|.++|||||.|.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 34455666 9999999999999999999999999999999999999999999985
No 201
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.01 E-value=0.0011 Score=59.30 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=47.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+|+|.|||+.+++.||+++|..||.+..+-+..+ .+|++.|.|-|.|.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~ 132 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFN 132 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeec
Confidence 34468999999999999999999999999999988888 69999999999985
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.033 Score=51.12 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCC--HHHHHHHH
Q 013489 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS--EEEISTVF 116 (442)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~--~~~~~~i~ 116 (442)
++....-.|.-|..+|.+.+=|.......... ++...+...|.+|++.-|.+..+|..|...+....+. ...++.+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 45667778999999999999999999877654 4556789999999999999999999999888765443 24577788
Q ss_pred HHHHhCChh
Q 013489 117 EKSLLCAFS 125 (442)
Q Consensus 117 ~~al~~~~~ 125 (442)
.+++..++.
T Consensus 217 ~~al~~D~~ 225 (287)
T COG4235 217 RQALALDPA 225 (287)
T ss_pred HHHHhcCCc
Confidence 887765544
No 203
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.01 E-value=0.024 Score=57.63 Aligned_cols=77 Identities=10% Similarity=0.146 Sum_probs=64.4
Q ss_pred HHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+.+..++.-.|....-|..++..+..++ ...+|+..+.++++.+-.+..+|..|.-.-...|+.+.|...|.+.+.-
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~-~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLK-KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHh-hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 3333333335566778999999999999 8899999999999998778899999999999999999999999998853
No 204
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.07 Score=47.87 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=30.0
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
.-.| +.+.|+.++..+...-+....+-...+-.....|++..|+.|-..
T Consensus 179 ~L~g-d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRG-DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 3444 677777777776666555555555555556666676666666544
No 205
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.066 Score=50.04 Aligned_cols=171 Identities=16% Similarity=0.083 Sum_probs=99.7
Q ss_pred cCChhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHH
Q 013489 36 SGDPGRVQLLYERAITDFP---VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p---~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~ 112 (442)
..|+..++.+.|-.+...- .+.++|+.|+.| +.++.+.+..+|.-+...---.+++|...+- +.-..+...++
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~f---hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAc-c~FyLg~Y~eA 110 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF---HLGDYEEALNVYTFLMNKDDAPAELGVNLAC-CKFYLGQYIEA 110 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHH---hhccHHHHHHHHHHHhccCCCCcccchhHHH-HHHHHHHHHHH
Confidence 4466667777666654321 355788888887 4466677888887777633223467766442 22222334455
Q ss_pred HHHHHHHHhCChhh------------HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchh
Q 013489 113 STVFEKSLLCAFST------------FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (442)
Q Consensus 113 ~~i~~~al~~~~~~------------~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~ 180 (442)
.++-.+|-..+... -.....+....-+.+..++ ....+.-+|..|++|+++....+.+++.
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqL-------SLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQL-------SLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 55544443332210 0000011111111111111 1124566889999999999888777666
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
..-+-.+.|-.++++. -++-+.+++.-.++.+|+++-
T Consensus 184 y~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred hhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcHH
Confidence 6556666666667777 788999999999999998763
No 206
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.98 E-value=0.056 Score=45.09 Aligned_cols=102 Identities=9% Similarity=-0.068 Sum_probs=86.2
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
++.++..-.|+......|+++.+..+|+-.+...|.+...|.....-.. ..++.+.+...|.+|+..-|+++.......
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 5677777788888889999999999999999999999999999997655 345667899999999999998888777655
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC
Q 013489 100 LSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 100 ~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
. +....++.+.++..|+.++...
T Consensus 111 ~-c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 E-CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred H-HHHHcCCHHHHHHHHHHHHHHh
Confidence 4 4455799999999999999643
No 207
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.98 E-value=0.0061 Score=45.21 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
++.|..++...+...+....++...+.+....+ +++.|..+|+.++...|....+|...+.+....|+.+.|..++.++
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444433333333356666666666666 7777888888877777776677777777777777777777777777
Q ss_pred Hh
Q 013489 244 YS 245 (442)
Q Consensus 244 l~ 245 (442)
+.
T Consensus 95 ~~ 96 (100)
T cd00189 95 LE 96 (100)
T ss_pred Hc
Confidence 64
No 208
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.95 E-value=0.051 Score=45.28 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 013489 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (442)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~ 266 (442)
.++-.....| +++.|..+|+-++..+|.+...|..+.-.....|++..|...|.+|+. +.++.|.-.+.. -.---.
T Consensus 40 ~~A~~ly~~G-~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~a-g~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVK-EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAA-AECYLA 115 (157)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHH-HHHHHH
Confidence 3455556777 999999999999999999999999999999999999999999999997 566777655543 333344
Q ss_pred hCCHhhHHHHHHhhc
Q 013489 267 YGTLEDFDHSVQKVT 281 (442)
Q Consensus 267 ~G~~~~~~~~~~~~~ 281 (442)
.|+++.-..++..++
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 688776666665543
No 209
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.93 E-value=0.0019 Score=64.69 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCC---CCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK---FTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~~fv~f~ 441 (442)
+...+++|||||++.+++..|-..|..||+|.+++|+..+ ...+.+.+|||.|.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFM 227 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeeh
Confidence 4556789999999999999999999999999999998764 24567789999884
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.032 Score=51.18 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=91.8
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--chhhHHHHHHHHH
Q 013489 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVYSRA 84 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~v~erA 84 (442)
..|..|..+|. +.+.|.-....-...|+...+..-|.+|+...|.++++|..|..-+.... .....+..+|.+|
T Consensus 144 ~Le~~L~~nP~----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 144 RLETHLQQNPG----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHhCCC----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 45777777776 88899999999999999999999999999999999999999998776543 3445689999999
Q ss_pred HHcCCCcHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 85 TKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 85 l~~~p~s~~-lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
++.-|.... +|..-+..++ .++..++...|+..+...+.
T Consensus 220 l~~D~~~iral~lLA~~afe--~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 220 LALDPANIRALSLLAFAAFE--QGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcCCC
Confidence 999987654 4444344444 58899999999999976554
No 211
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=0.0013 Score=54.46 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeC
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (442)
-.+.||||||+..+++.+|+..|..||.|.+|=|-..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn 45 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN 45 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec
Confidence 3679999999999999999999999999999866554
No 212
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.49 Score=45.76 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=119.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHH
Q 013489 31 KYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (442)
Q Consensus 31 ~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~ 110 (442)
.|.....++..+..+-..||...-.++..-.+-.+... ..++.+++...|..|+++-..|.+.....-...+ ..++.+
T Consensus 464 ~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ld 541 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLD 541 (840)
T ss_pred HHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHH
Confidence 33333446777887888888876666665555544443 2356788999999999987766654443222233 367888
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHH
Q 013489 111 EISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAH 190 (442)
Q Consensus 111 ~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~ 190 (442)
++...|-+.-..-..++.-.+.+-..| .+.+.-.+|++++.+.....+....+....+.
T Consensus 542 eald~f~klh~il~nn~evl~qianiy---------------------e~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIY---------------------ELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH---------------------HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 888888774433333333333222111 01122234566666655555666678889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhchhHHHH--HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 191 LEQSMGKDMVSARGVWERLLKISGAMLEA--WQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 191 ~e~~~~~~~~~ar~i~~~~l~~~~~~~~~--w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
++-.-| +..+|-+++-.....+|.+.+. |+..+-++ ..-.+++...|++|.-
T Consensus 601 lydqeg-dksqafq~~ydsyryfp~nie~iewl~ayyid--tqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 601 LYDQEG-DKSQAFQCHYDSYRYFPCNIETIEWLAAYYID--TQFSEKAINYFEKAAL 654 (840)
T ss_pred Hhhccc-chhhhhhhhhhcccccCcchHHHHHHHHHHHh--hHHHHHHHHHHHHHHh
Confidence 988888 8999999999988889998773 55433322 2234677788888763
No 213
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.86 E-value=0.0017 Score=65.21 Aligned_cols=48 Identities=33% Similarity=0.401 Sum_probs=41.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCC----CcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK----SRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~----~~g~~fv~f~ 441 (442)
++||.||+++++.+++..+|...|.|.++.|...+ .+. |.|||||+|.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~ 568 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFA 568 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEec
Confidence 49999999999999999999999999999887653 332 5599999996
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.86 E-value=0.0092 Score=42.94 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 191 LEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 191 ~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+....+ +++.|.+++++++..+|+++.+|..++.+....|++..|...|++++..
T Consensus 4 ~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345566 8999999999999999999999999999999999999999999999973
No 215
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.0016 Score=63.50 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=44.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 384 RTKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 384 ~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
+...+...++|+|-|||..++.++|+.+|+.||.|+.|+ .|...+|..||+|
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-----~t~~~~~~~~v~F 119 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-----ETPNKRGIVFVEF 119 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-----cccccCceEEEEE
Confidence 333456678999999999999999999999999999975 4555689999998
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.0064 Score=43.78 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=51.1
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHH
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL 94 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~l 94 (442)
...++++.+..+++++|..+|.++.+|..++..+... +....+...|++++..+|.....
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHH
Confidence 4578899999999999999999999999999887754 45677999999999999976554
No 217
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.81 E-value=0.15 Score=49.81 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=61.8
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHH
Q 013489 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (442)
Q Consensus 33 e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~ 112 (442)
....|.++.+...+.-.+...|.|+-+|..-...+...++. ..+.+-|++|+...|.+.-+|..|...+-. .+...++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~-~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA-KEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHH
Confidence 33456777788888888888888888888888777765544 447788888888888888888888876654 4444455
Q ss_pred HHHHHHHHh
Q 013489 113 STVFEKSLL 121 (442)
Q Consensus 113 ~~i~~~al~ 121 (442)
..++++.+.
T Consensus 394 i~~L~~~~~ 402 (484)
T COG4783 394 IRILNRYLF 402 (484)
T ss_pred HHHHHHHhh
Confidence 555555443
No 218
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.77 E-value=0.045 Score=53.30 Aligned_cols=101 Identities=16% Similarity=-0.039 Sum_probs=81.9
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.++..+...|...|. |.-.|..-.+.....+....+...|.+++...|...-+|+.|.+.+.+.+ .+..+..++.
T Consensus 324 ~A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-~~~eai~~L~ 398 (484)
T COG4783 324 EALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG-KPQEAIRILN 398 (484)
T ss_pred hHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-ChHHHHHHHH
Confidence 455556666666664 66566666676778899999999999999999999999999999888554 4557889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCC
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRAS 108 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~ 108 (442)
+.+...|.....|...++..+.....
T Consensus 399 ~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 399 RYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCch
Confidence 99999999999999999877764443
No 219
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.76 E-value=0.063 Score=46.11 Aligned_cols=81 Identities=12% Similarity=-0.025 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y 98 (442)
....+...+......|+++.+..+|++++...|.. ..+|...+..+.. .+..+.+...|.+|+...|.....|..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44467777777778899999999999999876653 3567766665553 4566789999999999999888888776
Q ss_pred HHHHH
Q 013489 99 LLSLE 103 (442)
Q Consensus 99 ~~~le 103 (442)
...+.
T Consensus 113 g~~~~ 117 (172)
T PRK02603 113 AVIYH 117 (172)
T ss_pred HHHHH
Confidence 65443
No 220
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.73 E-value=0.0023 Score=43.56 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.2
Q ss_pred HHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 408 LRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 408 l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
|..+|++||.|.++.+..++ +|+|||+|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~ 29 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFA 29 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEES
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEEC
Confidence 67899999999999987763 699999995
No 221
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.70 E-value=0.053 Score=42.83 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc---HHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRS 98 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s---~~lW~~y 98 (442)
.+..-+......|+.+.+..+|++++..+|.+ ...+..++..+... +..+.+...|++++...|.. ..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45555666677899999999999999988876 45666666655533 45677999999999988874 4567666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 99 LLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
...+.. .+..+.+...|++++...+.
T Consensus 83 ~~~~~~-~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQE-LGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHH-hCChHHHHHHHHHHHHHCcC
Confidence 665544 67778889999998876555
No 222
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.69 E-value=0.029 Score=45.03 Aligned_cols=75 Identities=16% Similarity=0.310 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHh--hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-chh-HHHHHHHHHHHHHhcccHHHH
Q 013489 161 RETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGA-MLEAWQSYISMEIELDHINEA 236 (442)
Q Consensus 161 r~~~~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~~-~~~~w~~~~~~e~~~g~~~~a 236 (442)
...+++|+..+. ..+.+.+..+++|+.|+++. + + .+.+|.-+... -+. .+.+|..|+.+....|++..|
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~-d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A 118 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D-E---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKA 118 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C-C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 345566665542 23345566789999998652 3 3 57788888877 444 456999999999999999999
Q ss_pred HHHHHH
Q 013489 237 RSIYKR 242 (442)
Q Consensus 237 r~i~~r 242 (442)
..||+.
T Consensus 119 ~~iy~~ 124 (125)
T smart00777 119 DEVYQL 124 (125)
T ss_pred HHHHHc
Confidence 999975
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.66 E-value=0.12 Score=50.59 Aligned_cols=174 Identities=12% Similarity=-0.021 Sum_probs=103.7
Q ss_pred HHHcCCCcH---HHH--HHHHHHHHH----ccCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013489 84 ATKNCPWVG---ELW--VRSLLSLER----SRASEEEISTVFEKSL---LCAFSTFEEYLDLFLTRIDGLRRRILFSGEV 151 (442)
Q Consensus 84 Al~~~p~s~---~lW--~~y~~~le~----~~~~~~~~~~i~~~al---~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~ 151 (442)
+.+.-|.+. .-| -.|++-... .......+..+|.+|+ ...|.....|-. +++|... +.......
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~--lA~~h~~-~~~~g~~~- 315 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCL--LAECHMS-LALHGKSE- 315 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHH--HHHHHHH-HHHhcCCC-
Confidence 444446666 778 777764443 1223466888899999 444443333322 2222111 11111111
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Q 013489 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (442)
Q Consensus 152 ~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g 231 (442)
...+........++|.+ .++......-..+......+ +.+.|...|++++..+|+....|..+.....-.|
T Consensus 316 -~~~~~~~a~~~A~rAve-------ld~~Da~a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 316 -LELAAQKALELLDYVSD-------ITTVDGKILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred -chHHHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 11223233333344433 22222223333444445556 6999999999999999999999999999988899
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHh
Q 013489 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLE 271 (442)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~ 271 (442)
+.+.|+..+++|+.. .|......|...|+..--.+|-.+
T Consensus 387 ~~~~a~~~i~~alrL-sP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 387 KIEEARICIDKSLQL-EPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred CHHHHHHHHHHHhcc-CchhhHHHHHHHHHHHHcCCchhh
Confidence 999999999999973 243444567788886654444333
No 224
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.65 E-value=0.042 Score=50.31 Aligned_cols=99 Identities=14% Similarity=-0.036 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~ 105 (442)
.+.=.+-.++.+++..|+..|.+||..+|.+.-+..+-+.-+. .++..+.+.+-++.||+..|.....|...-+ ....
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~-A~~~ 161 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGL-AYLA 161 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHH-HHHc
Confidence 3333444456678999999999999999999999998887555 3455677889999999999998888888655 4445
Q ss_pred cCCHHHHHHHHHHHHhCChhh
Q 013489 106 RASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~~ 126 (442)
.+.++++..-|.+||...|.+
T Consensus 162 ~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc
Confidence 678888888899999988773
No 225
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.64 E-value=0.013 Score=43.57 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhcCch--hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTD--GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~--~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
++.|+.++++.+...+ +...+|...+......| +..+|-.++++ +...+.+..+..-++......|+++.|+.+|+
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3444444444443222 13446666788888888 89999999998 66777777766666888888899999999988
Q ss_pred HH
Q 013489 242 RC 243 (442)
Q Consensus 242 ra 243 (442)
+|
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 226
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.77 Score=44.14 Aligned_cols=243 Identities=10% Similarity=-0.007 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g-~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
...|+.-..+.-... .......++-.-....|.|+.+-...++.+...+ +...+...|+++....|....---.|...
T Consensus 197 ls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G-dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 197 LSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG-DYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc-CchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 346776555554332 2334455667777789999999999998777554 44558899999999888765544455543
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHH---H-HHH-----HHHHHHHHHHhhc-cCccchhhhHHHH---HHHHHHHH
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEY---L-DLF-----LTRIDGLRRRILF-SGEVEGVLDYSLI---RETFQRAS 168 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~---~-~~~-----~~~~~~l~rr~~~-~~~~~~~~~~~~~---r~~~~~a~ 168 (442)
|.+ .+..+....+-.+.+.....+.... . -+| ...+.+...-+.. ....+.++--..+ ...-+.|.
T Consensus 276 L~~-eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 276 LGQ-EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred HHh-ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 443 4667777777777665432211111 0 111 1111111111110 0111111100000 00012222
Q ss_pred HHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHhc-ccHHHHHHHHHHHHhc
Q 013489 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI-SMEIEL-DHINEARSIYKRCYSK 246 (442)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~-~~e~~~-g~~~~ar~i~~ral~~ 246 (442)
-.+..+..-.|..+++|.-...-+...+ .+..|--+-+.+++.+|.+.....-+. ...... .-.++|.++|++++.
T Consensus 355 IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~-~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~- 432 (564)
T KOG1174|consen 355 IAFRTAQMLAPYRLEIYRGLFHSYLAQK-RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK- 432 (564)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-
Confidence 2222221123444555555555555667 788888888888888888776333221 211111 246899999999997
Q ss_pred ccCCCChHHHH--HHHHHHHHHhCCH
Q 013489 247 RFTGTGSEDIC--HAWLRFEREYGTL 270 (442)
Q Consensus 247 ~~~~~~~~~i~--~~~~~fE~~~G~~ 270 (442)
+.++....+. -.....|..+|+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchH
Confidence 3445444332 3445566666654
No 227
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.003 Score=62.17 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=50.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+.+|||+||...++..+.++...||.+...+++.|..+|-++||||.+|.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~ 339 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYC 339 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeee
Confidence 345669999999999999999999999999999999999999999999999985
No 228
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.45 E-value=0.09 Score=51.25 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
++.|+.+++......+. ++...|++....+ +..+|-.+++++++..|.++.++...++|....++++-|..+.++|
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555555554433332 4455666665555 6677888888888888877888888888888888888888888888
Q ss_pred HhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 244 YSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 244 l~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
+.. .+ .-+..|..+-+.|=..++++.|+
T Consensus 261 v~l--sP----~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 261 VEL--SP----SEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHh--Cc----hhHHHHHHHHHHHHhcCCHHHHH
Confidence 862 22 23345555555554444444443
No 229
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.41 E-value=0.0025 Score=58.41 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeeCCCCCCCcceEEEEe
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
......+|||||-+.+|++||.+.....| .+.++++..++.+|+++|||.|..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~ 131 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVL 131 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEe
Confidence 34556899999999999999998887777 667888888888999999999864
No 230
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.68 Score=41.68 Aligned_cols=93 Identities=8% Similarity=0.080 Sum_probs=68.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHH
Q 013489 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDIC 257 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~ 257 (442)
.++..+.|...+-.+.+.| +.+.||.-|.++++..|+...+.....-.....|+.+.|+.++.++... + .....|-
T Consensus 130 ~p~d~~~~~~lgaaldq~G-r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~-~ad~~v~ 205 (257)
T COG5010 130 APTDWEAWNLLGAALDQLG-RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--P-AADSRVR 205 (257)
T ss_pred CCCChhhhhHHHHHHHHcc-ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--C-CCchHHH
Confidence 3444456666666667888 9999999999999999999988888888888899999999999999863 3 3233555
Q ss_pred HHHHHHHHHhCCHhhHH
Q 013489 258 HAWLRFEREYGTLEDFD 274 (442)
Q Consensus 258 ~~~~~fE~~~G~~~~~~ 274 (442)
+...-.-...|+.+.-+
T Consensus 206 ~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 206 QNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHHhhcCChHHHH
Confidence 55444444456654433
No 231
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.38 E-value=0.89 Score=42.66 Aligned_cols=235 Identities=12% Similarity=0.034 Sum_probs=134.5
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~ 100 (442)
.+.+-......-..-.|.+..+..-|..||..+|++......-+.-...-++. ..+..-+.|.+..-|.-...-+....
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-k~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-KAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-ccchhhHHHHHhcCccHHHHHHHhch
Confidence 34444444444334456677778888888888887665443333222212222 23566778888888865444444333
Q ss_pred HHHHccCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHH-----HHHHHHHHhh
Q 013489 101 SLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET-----FQRASDYLSE 173 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~-----~~~a~~~l~~ 173 (442)
.+. ..+..+.+..-|...|+..++. ..+..+-. ..++-.+ .-+..+... ...++.++..
T Consensus 115 vll-K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl-~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 115 VLL-KQGELEQAEADFDQVLQHEPSNGLVLEAQSKL-ALIQEHW------------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhh-hcccHHHHHHHHHHHHhcCCCcchhHHHHHHH-HhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 333 3678899999999999776641 11111100 0000000 000111111 2345555555
Q ss_pred hhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013489 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (442)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (442)
.+...+=...++.+-++.+...| .+..|..=+..+-+...++.+.......++...|+.+........||. +.++ .
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~-e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd-H 256 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEG-EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD-H 256 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc-h
Confidence 44433334457777777777778 788888778777777788888888888888888888888888888885 4433 2
Q ss_pred HHHHHHHHHHHHHhCCHhhHH
Q 013489 254 EDICHAWLRFEREYGTLEDFD 274 (442)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~~ 274 (442)
...|-.|..+-...-++++.+
T Consensus 257 K~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433444433
No 232
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.06 Score=49.29 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
..|+.|+..+..++.-.|...-+|..-|..+.++| .++.|.+=.+.+|..+|.+...|..........|+++.|..-|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 44666666666666656666668888888889999 89999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCh
Q 013489 242 RCYSKRFTGTGS 253 (442)
Q Consensus 242 ral~~~~~~~~~ 253 (442)
+||. +.+++.
T Consensus 174 KaLe--ldP~Ne 183 (304)
T KOG0553|consen 174 KALE--LDPDNE 183 (304)
T ss_pred hhhc--cCCCcH
Confidence 9997 555544
No 233
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.21 E-value=0.92 Score=48.30 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHH--HH-HH
Q 013489 56 SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE--EY-LD 132 (442)
Q Consensus 56 ~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~--~~-~~ 132 (442)
....|..|+....+ ...+...|-||++..|.-...|...-. +.+...+...++..|.+|+..+...+. .+ .+
T Consensus 460 ~~~~w~a~~~~rK~----~~~al~ali~alrld~~~apaf~~LG~-iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~ad 534 (1238)
T KOG1127|consen 460 NSEFWVALGCMRKN----SALALHALIRALRLDVSLAPAFAFLGQ-IYRDSDDMKRAKKCFDKAFELDATDAEAAAASAD 534 (1238)
T ss_pred HHHHHHHHHHhhhh----HHHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Confidence 44677777764432 345778888888888877777776444 444334566788888888876554211 11 11
Q ss_pred H------HHHHHHHHHHHhhccCccchhhhHHH------HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHH
Q 013489 133 L------FLTRIDGLRRRILFSGEVEGVLDYSL------IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV 200 (442)
Q Consensus 133 ~------~~~~~~~l~rr~~~~~~~~~~~~~~~------~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~ 200 (442)
. |......+-+.............|-. -...+..++..+..++...|..+..|.-..+.+...| .++
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG-ry~ 613 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG-RYS 613 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC-cee
Confidence 1 11111111110000000000000100 0012234455555555556777889999988888888 789
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 201 SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 201 ~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.|.++|.++....|.+.-.-..-+-++...|.+..+..++...+.
T Consensus 614 ~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999988887765545555677778888888887777664
No 234
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.19 E-value=2 Score=44.95 Aligned_cols=85 Identities=8% Similarity=0.061 Sum_probs=52.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH------HHh-----------------c-hhHHHHHHHHHHHHHhcccHHHHHHH----
Q 013489 188 WAHLEQSMGKDMVSARGVWERL------LKI-----------------S-GAMLEAWQSYISMEIELDHINEARSI---- 239 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~------l~~-----------------~-~~~~~~w~~~~~~e~~~g~~~~ar~i---- 239 (442)
.|+++...|++..+|-.+|.++ |.. + .+.+.+...-++|-..+.++++|..+
T Consensus 1027 aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1027 AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3555566666777777776654 211 1 23467888888888888888888776
Q ss_pred --HHHHHhcccC----------------C-CC-----hHHHHHHHHHHHHHhCCHhh
Q 013489 240 --YKRCYSKRFT----------------G-TG-----SEDICHAWLRFEREYGTLED 272 (442)
Q Consensus 240 --~~ral~~~~~----------------~-~~-----~~~i~~~~~~fE~~~G~~~~ 272 (442)
|.+|++-... . +. ...|+....+|....|+...
T Consensus 1107 r~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 4555532100 0 11 12577778888888887543
No 235
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.16 E-value=0.0054 Score=58.05 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=43.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+..|+|||.|||++.|+..|++-|..||.|..+.|+ ..|+++| .|-|.
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~ 581 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFF 581 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEec
Confidence 3345678999999999999999999999999999999883 3688888 56663
No 236
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.09 E-value=0.2 Score=39.44 Aligned_cols=56 Identities=16% Similarity=0.049 Sum_probs=32.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 189 AHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 189 a~~e~~~~~~~~~ar~i~~~~l~~~~~~---~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+......+ +.+.|...|+.++..+|++ ...+..++......|+++.|..+|++++.
T Consensus 9 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 9 ALLVLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33334445 6666666666666665543 34555556666666666666666666664
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.084 Score=38.42 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---ch-h---HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG-A---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~---~~-~---~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..++...+.+....| ++++|...|+++++. .+ + ...++...+.+....|+++.|...|++|+.
T Consensus 5 a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777888888888 999999999999976 22 2 244778888888899999999999999985
No 238
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.94 E-value=0.48 Score=37.89 Aligned_cols=92 Identities=17% Similarity=0.076 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC---cHHHHHHHHH
Q 013489 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW---VGELWVRSLL 100 (442)
Q Consensus 27 ~~y~~~e~~~g~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~---s~~lW~~y~~ 100 (442)
...+......|+.+++..+|++++..-+.. ...++.+..-+. ..+..+.+..+++.++..+|. +..++..++.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 344444567899999999999999964433 467888887666 456678899999999999888 7888888887
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 013489 101 SLERSRASEEEISTVFEKSL 120 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al 120 (442)
.+.. .+..+++...+-.++
T Consensus 84 ~L~~-~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYN-LGRPKEALEWLLEAL 102 (120)
T ss_pred HHHH-CCCHHHHHHHHHHHH
Confidence 7766 455555555555545
No 239
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=1.1 Score=39.62 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHH
Q 013489 28 IYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE 93 (442)
Q Consensus 28 ~y~~~e~~~g~~~~~~~lyERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~ 93 (442)
.-+.-....|+...+...|+..+..+|.++ .+|+.++.|.. ++...+...|++.++..|.+..
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~---~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ---GDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcc
Confidence 334445678999999999999999998765 57777776633 4567799999999999998763
No 240
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.94 E-value=0.17 Score=49.42 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=40.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~ 113 (442)
.++...+..+..++|..+|.+..++...+.|+.... ..+.|..+..+|+...|.....|...+. .+...++++.+.
T Consensus 213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-~~~lAL~iAk~av~lsP~~f~~W~~La~-~Yi~~~d~e~AL 288 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK-KYELALEIAKKAVELSPSEFETWYQLAE-CYIQLGDFENAL 288 (395)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhHHHHHHHHH-HHHhcCCHHHHH
Confidence 344445555566666666666666666666555433 2345556666666666666666665554 222244444443
No 241
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.80 E-value=0.35 Score=41.18 Aligned_cols=78 Identities=12% Similarity=-0.014 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y 98 (442)
....|...+......|+++.+...|++++...|.+. ..|......+. ..+..+.+...|++|+...|.....|...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 456788888888889999999999999998766543 46777666555 44566789999999999989887777665
Q ss_pred HH
Q 013489 99 LL 100 (442)
Q Consensus 99 ~~ 100 (442)
..
T Consensus 113 a~ 114 (168)
T CHL00033 113 AV 114 (168)
T ss_pred HH
Confidence 54
No 242
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.73 E-value=0.044 Score=40.73 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=55.3
Q ss_pred cCChhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHH
Q 013489 36 SGDPGRVQLLYERAITDFPV--SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEIS 113 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~--~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~ 113 (442)
+|+++.|..+|++++...|. +...|...+.-+.. .+..+.+..++++ ...-|....++..+++.+.. .+..+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 57888999999999999885 45677765555543 3456778888888 55555554555555664443 67788888
Q ss_pred HHHHHH
Q 013489 114 TVFEKS 119 (442)
Q Consensus 114 ~i~~~a 119 (442)
.+|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888774
No 243
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.71 E-value=0.43 Score=48.57 Aligned_cols=172 Identities=13% Similarity=0.029 Sum_probs=98.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--ccCC-----HHHHHHH
Q 013489 47 ERAITDFPVSSDLWLDYTQYLDKTL----KVGNVVRDVYSRATKNCPWVGELWVRSLLSLER--SRAS-----EEEISTV 115 (442)
Q Consensus 47 ERal~~~p~~~~lW~~Y~~~l~~~~----~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~--~~~~-----~~~~~~i 115 (442)
+|+...-|.+.+.|-.|+.-..... .....+..+|++|+..-|.....|...+..... ...+ ...+...
T Consensus 327 ~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 327 ERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4445567788888888876543211 224568899999999999988777764332211 1111 2334444
Q ss_pred HHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHH
Q 013489 116 FEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (442)
Q Consensus 116 ~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (442)
..+++..+.. ....+..+-... .. ..++......+++|+. ..+ ....|...+.+..
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~--~~------------~g~~~~A~~~l~rAl~-------L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQA--LV------------KGKTDEAYQAINKAID-------LEM-SWLNYVLLGKVYE 464 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHH--Hh------------cCCHHHHHHHHHHHHH-------cCC-CHHHHHHHHHHHH
Confidence 5555443211 111111110000 00 0233344444555544 344 3457888899988
Q ss_pred HcCCCHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 194 SMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~~~-~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
..| +.+.|...|++++..+|.... +|.+=.-|. -+++...-.+.+++
T Consensus 465 ~~G-~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~---~~~~~~~~~~~~~~ 512 (517)
T PRK10153 465 LKG-DNRLAADAYSTAFNLRPGENTLYWIENLVFQ---TSVETVVPYLYRFL 512 (517)
T ss_pred HcC-CHHHHHHHHHHHHhcCCCCchHHHHHhcccc---ccHHHHHHHHHhcc
Confidence 889 999999999999999887653 555544443 35555555555554
No 244
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.69 E-value=2 Score=45.92 Aligned_cols=90 Identities=11% Similarity=-0.019 Sum_probs=72.8
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--CCHH
Q 013489 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR--ASEE 110 (442)
Q Consensus 33 e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~--~~~~ 110 (442)
+....+++.++..-+.+|..+|+|...|+-....+.....+.+++...|-.|....|...-.|......+++.+ ...+
T Consensus 12 al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld 91 (1238)
T KOG1127|consen 12 ALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLD 91 (1238)
T ss_pred HHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhh
Confidence 34456788888999999999999999999999988877777889999999999999999999998777666522 2346
Q ss_pred HHHHHHHHHHhC
Q 013489 111 EISTVFEKSLLC 122 (442)
Q Consensus 111 ~~~~i~~~al~~ 122 (442)
++-.+|++++..
T Consensus 92 ~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 92 RAAKCYQRAVLI 103 (1238)
T ss_pred HhHHHHHHHHHh
Confidence 677788887743
No 245
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.65 E-value=0.047 Score=47.28 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=38.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEee-CCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILH-DKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~-~~~~g~~~g~~fv~f~ 441 (442)
..-+|+||++||.++...+|..+|..|-.-..+.|-. ++...-.+.+|||+|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~ 85 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFT 85 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEec
Confidence 4467999999999999999999999886554444322 2222224589999995
No 246
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.64 E-value=0.68 Score=38.36 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
..+.++.+....+ +++.|..+++.+ ...+-...++.-..+.....|+.+.|+..|++||
T Consensus 87 a~l~LA~~~~~~~-~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQG-QYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3444566666666 777777777552 2223334466666677777777777777777764
No 247
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.63 E-value=0.19 Score=46.34 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~---~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+...+.++...| +++.|...|.+++..+|++ .+.|...+......|+.+.|+.+|++++.
T Consensus 182 A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555 6666666666666665543 34555555555555666666666666665
No 248
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.55 E-value=0.045 Score=52.99 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=43.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.....|-+.+||+.++++||.+||+..-.|.. +.++.+ ..|++-|=|||.|+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~ 153 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFE 153 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEec
Confidence 34458999999999999999999997755554 567777 68889999999996
No 249
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.55 E-value=0.012 Score=35.31 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=30.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHhcccHHHHH
Q 013489 205 VWERLLKISGAMLEAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 205 i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar 237 (442)
+|+++|+.+|+++..|..++.+....|+++.|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999886
No 250
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.53 E-value=0.55 Score=44.04 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAW 260 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~ 260 (442)
...+...|+.+...- +++..|--+|+.+...++..+.+....+...+..|+++.|..++..|+.. ....+..+.. -
T Consensus 166 l~qLa~awv~l~~g~-e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaN-l 241 (290)
T PF04733_consen 166 LTQLAEAWVNLATGG-EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLAN-L 241 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHH-H
T ss_pred HHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHH-H
Confidence 345555565554333 26788888888877777777777777888888888888888888888863 3344554443 4
Q ss_pred HHHHHHhCCH-hhHHHHHH
Q 013489 261 LRFEREYGTL-EDFDHSVQ 278 (442)
Q Consensus 261 ~~fE~~~G~~-~~~~~~~~ 278 (442)
+-.....|.. +.+.+.+.
T Consensus 242 iv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHH
Confidence 6666666765 44444443
No 251
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.30 E-value=0.27 Score=42.14 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~ 232 (442)
..++..++.+....| +.+.|...|.+++...|+....|..+..+....|+
T Consensus 72 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 72 SYILYNMGIIYASNG-EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 457777888888888 99999999999999999888877777776666554
No 252
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.27 E-value=2.3 Score=38.77 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHH-HHHHHH
Q 013489 30 LKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSL 99 (442)
Q Consensus 30 ~~~e~~~g~~~~~~~lyERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~-lW~~y~ 99 (442)
+.-....|+.+.+...|+..+...|.++ .+|+.|+.|-. ++.+.+...|+++++..|.+.. -|..|+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~---~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3333567999999999999999999875 37888877643 4567799999999999998754 344444
No 253
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.042 Score=53.53 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCC-CC--CCcc---eEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF-TG--KSRV---VQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g--~~~g---~~fv~f~ 441 (442)
..-.+.||||+||++++++.|...|..||.+ .|.++.... .+ -++| |.|+.|.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe 314 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFE 314 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEec
Confidence 3446799999999999999999999999985 566764211 12 2556 9999985
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.15 E-value=0.43 Score=39.51 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 013489 74 GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (442)
Q Consensus 74 ~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~a 119 (442)
.+.+..++.+++...|.+..+|...|..+.. .++...+..+|+++
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3445555555555555555555555543333 34444444444443
No 255
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.10 E-value=2.5 Score=39.52 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch-----h-HHHHHHHHHHHHHhcc
Q 013489 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-GKDMVSARGVWERLLKISG-----A-MLEAWQSYISMEIELD 231 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~~~~~~ar~i~~~~l~~~~-----~-~~~~w~~~~~~e~~~g 231 (442)
.....+++|+.++... ........++...+.++... + +++.|.+.|++++..+. . ...+....+.+....|
T Consensus 92 ~Ai~~~~~A~~~y~~~-G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 92 EAIECYEKAIEIYREA-GRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHHC-T-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 4445666666655322 11223346777788887777 6 89999999999998731 1 1358889999999999
Q ss_pred cHHHHHHHHHHHHhcccCCCCh----HHHHHHHHHHHHHhCCHhhHHHHHHhhc
Q 013489 232 HINEARSIYKRCYSKRFTGTGS----EDICHAWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~----~~i~~~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
+++.|..+|++.....+..+.. ...+..-+-.--..|++...+.+++++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999988643222211 1122111222233477766666666653
No 256
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.08 E-value=2.9 Score=39.00 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh------HH-HHHHHHHHHH
Q 013489 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------ML-EAWQSYISME 227 (442)
Q Consensus 155 ~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~------~~-~~w~~~~~~e 227 (442)
.++......|++|.+++...- .......+....+.+....+ +++.|.++|+++.....+ ++ ..++..+-+.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 366677788889988875432 11223568888999999999 999999999999976311 12 3667777777
Q ss_pred HhcccHHHHHHHHHHHHhcc--cCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 228 IELDHINEARSIYKRCYSKR--FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~~--~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
...||+..|+..|++..... +....--.+....++=- +.|+.+.+..++...
T Consensus 207 L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 207 LAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 77899999999999987531 22111112333323221 247888888777654
No 257
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.05 E-value=0.94 Score=37.51 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=11.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcC
Q 013489 29 YLKYEQSSGDPGRVQLLYERAITDF 53 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~~~ 53 (442)
.+......|+++.+...|+.++...
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 3333334445555555555555443
No 258
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.05 Score=53.02 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=48.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-+..+|||||+||.-++..+|-.+|. -||.|.-+-|=.|+.-+-++|-|=|+|.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFs 421 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFS 421 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeec
Confidence 45567999999999999999999999 7999999999999878889999999985
No 259
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.83 E-value=0.35 Score=41.23 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-------hcccHHHHHHHHHHH
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI-------ELDHINEARSIYKRC 243 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~-------~~g~~~~ar~i~~ra 243 (442)
.+|...+.+....| +.+.|...|++++...|.....|...+.+.. ..|+++.|...|++|
T Consensus 73 ~~~~~lg~~~~~~g-~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 73 YILYNIGLIHTSNG-EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 35666666766777 7777777777777777666666655555555 445555444444433
No 260
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.82 E-value=0.55 Score=43.29 Aligned_cols=98 Identities=10% Similarity=0.163 Sum_probs=70.4
Q ss_pred HHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc---HHH
Q 013489 24 QQYMIYLKY-EQSSGDPGRVQLLYERAITDFPVS-----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GEL 94 (442)
Q Consensus 24 ~~w~~y~~~-e~~~g~~~~~~~lyERal~~~p~~-----~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s---~~l 94 (442)
..|-.++.. ....|+++.+...|+..|..+|.+ ..+|+..+.|. .++.+.+...|.+++..+|.+ ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~---~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN---KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 344444443 355789999999999999999987 34565555543 356677999999999988875 456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 95 WVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
|......+. ..++.+.+..+|++.+...|.
T Consensus 220 l~klg~~~~-~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQ-DKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCcC
Confidence 655444333 468889999999998865444
No 261
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.80 E-value=0.037 Score=48.97 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=34.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCC
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT 429 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 429 (442)
...||+++||+.+....|+++|+.||.|-.|.+.....+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 348999999999999999999999999999988766444
No 262
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.77 E-value=0.087 Score=45.96 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=43.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+..+|+.|||.+++.+.+..+|.+|+.-..++++... +|.|||+|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~ 191 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFL 191 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecc
Confidence 3456699999999999999999999999999999998863 589999985
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.76 E-value=0.35 Score=39.62 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=43.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH
Q 013489 29 YLKYEQSSGDPGRVQLLYERAITDFPVS-----SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~~~p~~-----~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~ 92 (442)
=+.-....|+...+...||......|.. ..||+.|+.|.. ++.+.+...++|.++..|.+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~---~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ---GDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCC
Confidence 3343456778888888888888887764 368888887754 345667888888888887654
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=94.75 E-value=1.7 Score=42.81 Aligned_cols=172 Identities=9% Similarity=0.055 Sum_probs=94.6
Q ss_pred HHhcCCCCH---HHH--HHHHHHHHHh----cchhhHHHHHHHHHH---HcCCCcHH-----HHHHHHHHHHHc---cCC
Q 013489 49 AITDFPVSS---DLW--LDYTQYLDKT----LKVGNVVRDVYSRAT---KNCPWVGE-----LWVRSLLSLERS---RAS 108 (442)
Q Consensus 49 al~~~p~~~---~lW--~~Y~~~l~~~----~~~~~~~~~v~erAl---~~~p~s~~-----lW~~y~~~le~~---~~~ 108 (442)
+...-|.+. +-| -.|+.-...- ......+..+|.||+ ..-|.... -|+...+.+... ...
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 333346666 777 5555433321 123345778899999 56665443 233322222111 122
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHH
Q 013489 109 EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (442)
Q Consensus 109 ~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (442)
..++..+-++|+..++.+..... .+..+..+. ..++.|...++.+..-+|.....|.+.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~--~~g~~~~~~-------------------~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILA--IMGLITGLS-------------------GQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHhh-------------------cchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 34567778888877665332211 111110110 113333344444443467777788888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 189 AHLEQSMGKDMVSARGVWERLLKISGAMLE--AWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 189 a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~--~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
+-+..-.| +.+.|++..+++++..|.... +...++++... .-++++..+|-+-
T Consensus 379 ~~~~~~~G-~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 379 ALVHFHNE-KIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHcC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhc
Confidence 88877778 999999999999999887653 44445544433 3355566665543
No 265
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.48 E-value=3.8 Score=38.02 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=52.2
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHH
Q 013489 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL 94 (442)
Q Consensus 33 e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~l 94 (442)
..+.|+.++++.+||.||...|.++++-+.|..|.+.+ +++-.+-..|-+|+..-|...+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHH
Confidence 35678999999999999999999999999999999876 44455788999999999976554
No 266
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=94.10 E-value=0.045 Score=47.39 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=35.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
|+||.||..++++++|+.+|+.|.....++|-.. .| -..||++|.
T Consensus 212 tlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~ 256 (284)
T KOG1457|consen 212 TLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFE 256 (284)
T ss_pred hHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHH
Confidence 8999999999999999999999886666665432 23 358888874
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.91 E-value=0.066 Score=32.11 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHh
Q 013489 45 LYERAITDFPVSSDLWLDYTQYLDKT 70 (442)
Q Consensus 45 lyERal~~~p~~~~lW~~Y~~~l~~~ 70 (442)
+|++||..+|.++..|..++.++...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 37888888888888888888876644
No 268
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=2.6 Score=40.63 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH----HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHH
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML----EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDI 256 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~----~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i 256 (442)
.+..|..-+.-..+.| ++..|-++|..+|..+|++. .++..-+..-.++|....|..-.+.|+. +. + ..
T Consensus 248 ~le~~k~~gN~~fk~G-~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD---~-sy 320 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNG-NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--ID---S-SY 320 (486)
T ss_pred HHHHHHhhhhhHhhcc-chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cC---H-HH
Confidence 3456666666667777 89999999999999988764 3566666666778888888888888885 22 3 34
Q ss_pred HHHHHHHHHHhCCHhhHHHHHHhhchhH
Q 013489 257 CHAWLRFEREYGTLEDFDHSVQKVTPRL 284 (442)
Q Consensus 257 ~~~~~~fE~~~G~~~~~~~~~~~~~~~~ 284 (442)
..+++.=-+.|-.+++++.+++-+.+.+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666665544433
No 269
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.67 E-value=0.35 Score=47.35 Aligned_cols=67 Identities=12% Similarity=-0.023 Sum_probs=59.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH---HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~---~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+.....|..++..+...| +++.|...|+++|..+|++.+ .|...+-.....|+++.|...|++|+.
T Consensus 71 dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678888888888888 999999999999999999875 488888899999999999999999997
No 270
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.66 E-value=0.33 Score=47.52 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=58.5
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcchhhHHHHHHHHHHHc
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDKTLKVGNVVRDVYSRATKN 87 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~l---W~~Y~~~l~~~~~~~~~~~~v~erAl~~ 87 (442)
+|.....|.++.......|+++.++..|++||..+|++... |.+-+..+.. .+..+.+...|++|+..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 56788899999999999999999999999999999999865 8777776654 45668899999999995
No 271
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.32 E-value=0.082 Score=49.28 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=46.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....-+|||.+||..++.+++..+|.+||.|.. |.|-+|+.|++++|=|-|+|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~ 124 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYE 124 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeec
Confidence 345569999999999999999999999997753 557788899999999998874
No 272
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.30 E-value=3.5 Score=32.95 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh---HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~---~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+.++.++.....+| .++.|..+++.++..+|+ +..++..++......|..+.|...+-.++.
T Consensus 39 ~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 39 RALIQLASTLRNLG-RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555566677 788888888888877776 555666666666667777777777766664
No 273
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=5.9 Score=38.33 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=97.0
Q ss_pred chhhHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCChhhHHHHH--------HHHHHHHHHHH
Q 013489 72 KVGNVVRDVYSRATKNCPWVGELWVRSLL-SLERSRASEEEISTVFEKSLLCAFSTFEEYL--------DLFLTRIDGLR 142 (442)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~s~~lW~~y~~-~le~~~~~~~~~~~i~~~al~~~~~~~~~~~--------~~~~~~~~~l~ 142 (442)
++...+.++--+-++.-+.+ ....|++ .+...+.+.+.+..-|+++|..++.....-. ..|...-+.+-
T Consensus 183 ~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred ccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 33344555555555555543 2223332 1222356677788888888888776332211 22211110000
Q ss_pred HHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHH
Q 013489 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQS 222 (442)
Q Consensus 143 rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~ 222 (442)
+.+.+......|..|+.+ ...+..+...++..-+.....+| .+..|..-.+.++..++......+.
T Consensus 261 ----------k~G~y~~A~E~Yteal~i---dP~n~~~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 261 ----------KNGNYRKAYECYTEALNI---DPSNKKTNAKLYGNRALVNIRLG-RLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred ----------hccchhHHHHHHHHhhcC---CccccchhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcCHHHHHHHHH
Confidence 001122222333333332 22233445567777777888889 8999999999999999998888888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhc
Q 013489 223 YISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 223 ~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
-+......++.+.|+.-|+.|++.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888889999999999999974
No 274
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=92.85 E-value=0.24 Score=41.73 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
......|.|++||++.+.+||+++...-|.|.-..+.+| |+|.|+|.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~ 158 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYL 158 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeee
Confidence 355679999999999999999999999999988888777 57778774
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.54 E-value=0.35 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~ 215 (442)
+|...+.+....| +++.|+..|++++..+|+
T Consensus 3 ~~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLG-NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHCcC
Confidence 4555566666666 677777777777766664
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.41 E-value=3.3 Score=34.05 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=11.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCHH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSD 58 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~ 58 (442)
.+++..+...|+|.|..+|.++.
T Consensus 60 ~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 60 QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCC
Confidence 44444455555555555554443
No 277
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.35 E-value=0.28 Score=32.86 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=31.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.|-|.+.|++..+ .+..+|.+||.|.++.+... ..+.||.|.
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~ 44 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYK 44 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEEC
Confidence 47888898877554 45568889999999887622 347888875
No 278
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.33 E-value=1.2 Score=36.70 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+....+......| +++.|..++.+++..+|.+-.+|...+......|+...|..+|+++..
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445666667788 999999999999999999999999999999999999999999998764
No 279
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=13 Score=37.13 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.|....++..-|-.+..++ ++..|.+-.+.+++.+|+....|+.=........+++.|-..|..++.
T Consensus 388 ~P~Da~lYsNRAac~~kL~-~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLG-EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred CCchhHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555 566666666666666666665555555555555556666666666664
No 280
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=92.31 E-value=0.26 Score=38.37 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=27.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.|.|.+++..++.++|+..|+.+|.|.-|.+.... .-|||-|.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~ 45 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFK 45 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEES
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEEC
Confidence 578899999999999999999999999888876642 36778775
No 281
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.24 E-value=11 Score=36.18 Aligned_cols=215 Identities=14% Similarity=0.051 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV-SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~-~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
.++.-+..-...||.+++-.+..++-..-++ .-.+-+.-...+... ++...++.-...++..-|....+-..-.+ ..
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~v~~ll~~~pr~~~vlrLa~r-~y 197 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR-RDYPAARENVDQLLEMTPRHPEVLRLALR-AY 197 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhCcCChHHHHHHHH-HH
Confidence 4444445555678888888888888876332 223344444444433 34455778888888888877665444444 22
Q ss_pred HccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhh------------HHHH---------HH
Q 013489 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD------------YSLI---------RE 162 (442)
Q Consensus 104 ~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~------------~~~~---------r~ 162 (442)
...+....+-.+..+.-+.+.-+-.++..+....+..+-+..-.....+...+ ...+ ..
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC
Confidence 23566666666666554444433444444443322222221111111110000 0000 01
Q ss_pred HHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 163 TFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
..+.|..++...++. .|+. +...+. .-..++...-.+..++.++.+|+++.+|.....+..+++...+|...|+
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~--L~~~~~---~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR--LCRLIP---RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred ChHHHHHHHHHHHHhccChh--HHHHHh---hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 123444444444432 2222 222222 2233477778888888888899999999999999999999999999999
Q ss_pred HHHhc
Q 013489 242 RCYSK 246 (442)
Q Consensus 242 ral~~ 246 (442)
.|+..
T Consensus 353 aAl~~ 357 (400)
T COG3071 353 AALKL 357 (400)
T ss_pred HHHhc
Confidence 99974
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.07 E-value=3.3 Score=35.37 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=31.6
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC-------hhhHHHHHHHHHhcCCCCHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-------PGRVQLLYERAITDFPVSSD 58 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~-------~~~~~~lyERal~~~p~~~~ 58 (442)
.+|+.||.....+|. |.+++..|-..+...-+... ++.++.-||.||..+|...+
T Consensus 9 ~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 9 HARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 367788888877773 56666666665554422221 34556667778888887654
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.69 E-value=0.46 Score=27.90 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVS 56 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~ 56 (442)
.|..........|+++.++..|+++|..+|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56666677777888888888888888887764
No 284
>PRK15331 chaperone protein SicA; Provisional
Probab=91.51 E-value=7.7 Score=32.73 Aligned_cols=86 Identities=7% Similarity=-0.004 Sum_probs=66.9
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhh
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (442)
...| +++.|..+|.-+...++.+...|+.++-.....++++.|..+|..|.. +..++|.-.+.. -+.-...|+.+.
T Consensus 48 y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~a-gqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFT-GQCQLLMRKAAK 123 (165)
T ss_pred HHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchH-HHHHHHhCCHHH
Confidence 4566 999999999999999998899999999999999999999999999997 344555444433 333344577777
Q ss_pred HHHHHHhhch
Q 013489 273 FDHSVQKVTP 282 (442)
Q Consensus 273 ~~~~~~~~~~ 282 (442)
-..|+..+..
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777666544
No 285
>PRK15331 chaperone protein SicA; Provisional
Probab=91.29 E-value=5.1 Score=33.78 Aligned_cols=102 Identities=8% Similarity=-0.142 Sum_probs=75.8
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHH
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y 98 (442)
..+.++.--.|+--....|+.+.|..+|.-....+|.+++.|+..+.-.. ..+..+.+...|..|...-+.++.... |
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f-~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVF-F 110 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccc-h
Confidence 34566666666766678899999999999999999999999998887544 345667899999999986655443222 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 013489 99 LLSLERSRASEEEISTVFEKSLLC 122 (442)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~~al~~ 122 (442)
+..+....++.+.++..|+.++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 333444468889999999998864
No 286
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=8.9 Score=37.02 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHh
Q 013489 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH-INEARSIYKRCYS 245 (442)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~-~~~ar~i~~ral~ 245 (442)
+.+...-.-++....++ +++.||..|+++++..|++-.+-.+++.+-..... .++.+++|.+++.
T Consensus 289 ~N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CchhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333444445555 66666666666666666665555566655554442 3344666666554
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.90 E-value=0.69 Score=27.19 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~ 215 (442)
++|...+.++...| +.+.|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-DYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Confidence 35666677777777 777777777777777664
No 288
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.73 E-value=4.6 Score=32.61 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=63.1
Q ss_pred HcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHH---HHHHhCCH
Q 013489 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLR---FEREYGTL 270 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~---fE~~~G~~ 270 (442)
.-| +++.|.+.|.++|...|.....+..-++-.+..|+.+.|..-+++|+. +..+....-+++|.+ +-+..|+.
T Consensus 55 E~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 55 EAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred hcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHHhCch
Confidence 345 899999999999999998888888888888888999999999999987 455556666666665 45666777
Q ss_pred hhHHHHHH
Q 013489 271 EDFDHSVQ 278 (442)
Q Consensus 271 ~~~~~~~~ 278 (442)
+..+.-++
T Consensus 132 d~AR~DFe 139 (175)
T KOG4555|consen 132 DAARADFE 139 (175)
T ss_pred HHHHHhHH
Confidence 65554333
No 289
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=13 Score=33.92 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013489 59 LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRI 138 (442)
Q Consensus 59 lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~ 138 (442)
--..+..|+.....-.+.+..+++.-....-.+..+|...........++++++..+.++..........-++-+-+.+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r- 152 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHR- 152 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHH-
Confidence 3445555554333223445567777666555566688777666666678888888777762211100011111111111
Q ss_pred HHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhc-Cch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 139 DGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK-NTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 139 ~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~-~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
++-|...+..... +.+ ...++-..|+.+-..-. .+..|-=||+.+-.++|..
T Consensus 153 -------------------------~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T 206 (299)
T KOG3081|consen 153 -------------------------FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPT 206 (299)
T ss_pred -------------------------HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCC
Confidence 1222222222211 111 12234444555533333 5777888888888765555
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCC
Q 013489 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGT 269 (442)
Q Consensus 217 ~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~ 269 (442)
+.+-.-.+-+.+..|+++.|-.+++.||.+ ....|+.+... +-.-...|-
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl-iv~a~~~Gk 256 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL-IVLALHLGK 256 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH-HHHHHHhCC
Confidence 666666667777778888888888888874 33456544433 444555563
No 290
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=90.58 E-value=0.15 Score=44.11 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=34.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCC
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK 427 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 427 (442)
.+||||+|+...++++-|.++|-+.|+|..|.|+.++
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~ 45 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ 45 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc
Confidence 4699999999999999999999999999999999984
No 291
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.36 E-value=8.6 Score=36.05 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccH-HHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHI-NEARSIYKR 242 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~-~~ar~i~~r 242 (442)
++.|.-+++......+..+.+..-.+-.....| +++.|.++++.++..+|+++++....+-+....|+. +.+...+..
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 455555555544444445556666677777777 888888888888888888888888888887777754 566666665
Q ss_pred HH
Q 013489 243 CY 244 (442)
Q Consensus 243 al 244 (442)
..
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 44
No 292
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=7.8 Score=37.41 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCc--------hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKNT--------DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~--------~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e 227 (442)
.+......|++|+.+|....... ...+.+++..|-...+++ .+..|....+++|...|+++.....-.+..
T Consensus 223 k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 223 KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK-EYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh-hHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 45566677788877775332211 112246666777777888 899999999999999999999888888888
Q ss_pred HhcccHHHHHHHHHHHHh
Q 013489 228 IELDHINEARSIYKRCYS 245 (442)
Q Consensus 228 ~~~g~~~~ar~i~~ral~ 245 (442)
...|+++.||..|++|+.
T Consensus 302 l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 302 LALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhccHHHHHHHHHHHHH
Confidence 889999999999999997
No 293
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.68 E-value=26 Score=35.72 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhhcCchhh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch------hHHHHHHHHHHHH-HhcccHHH
Q 013489 164 FQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKISG------AMLEAWQSYISME-IELDHINE 235 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~------~~~~~w~~~~~~e-~~~g~~~~ 235 (442)
...+..+|.......+.. ..+.+..+++-...| ++..|.+++...+.... .+.+--..+|.++ ...++...
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g-n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG-NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 344555554444433332 446666788888888 89999999884442211 1112233444433 34456667
Q ss_pred HHHHHHHHHhcc---cCC-CChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 236 ARSIYKRCYSKR---FTG-TGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 236 ar~i~~ral~~~---~~~-~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
|-.++..|+.-. .+. ..--.+|..-..|+..+|+.++-...++
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 777888777431 111 1112456677899999998775444443
No 294
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.67 E-value=0.23 Score=44.22 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..|||.||+.-++.+.+..-|+.||+|....+..| ..|++-|=++|.|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFA 80 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhh
Confidence 48999999999999999999999999988777777 68888888888886
No 295
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=89.59 E-value=19 Score=34.15 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
++..|......+|...|+++++...-++-......++.|..-|+.|..
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 788899999999999999999888887777666678888888888886
No 296
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.47 E-value=2.4 Score=30.55 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 213 ~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
+|+-..++...+.+....|+++.|...|++|+... ...+....+...+.++=..+....+++.|++-...
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46667788889999999999999999999999641 11222233455555555555444445555544433
No 297
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.34 E-value=5.8 Score=32.05 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=68.9
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC-CCcH---HHHHHHHHHHHHccCCHHH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-PWVG---ELWVRSLLSLERSRASEEE 111 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~-p~s~---~lW~~y~~~le~~~~~~~~ 111 (442)
.|+.+.+...|..+|..+|...+.+.+-+.-+.-. ++.+.+.+-+++|+..- |..- ..+.... .+.+..++.+.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~trtacqa~vQRg-~lyRl~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQTRTACQAFVQRG-LLYRLLGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCccchHHHHHHHHHH-HHHHHhCchHH
Confidence 58999999999999999999999999998876644 45677899999999865 3322 3344433 36677889999
Q ss_pred HHHHHHHHHhCChh
Q 013489 112 ISTVFEKSLLCAFS 125 (442)
Q Consensus 112 ~~~i~~~al~~~~~ 125 (442)
+|.-|+.|-+.+.+
T Consensus 134 AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 134 ARADFEAAAQLGSK 147 (175)
T ss_pred HHHhHHHHHHhCCH
Confidence 99999999877654
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.19 E-value=0.75 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 188 WAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
.+.+....| +.+.|..+|++++..+|++
T Consensus 6 ~a~~~~~~g-~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLG-DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHC-HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHcc-CHHHHHHHHHHHHHHCcCC
Confidence 444555566 7888888888888887763
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.16 E-value=1.5 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGA 215 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~ 215 (442)
+|...+......+ +++.|...|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLG-DYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHCcC
Confidence 4555566666666 777777777777777665
No 300
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.01 E-value=18 Score=32.96 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=41.4
Q ss_pred hhhHHHHHHhhcCCCCC-hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH
Q 013489 3 NARAHLEEQISRQDLSD-SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL 59 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~-~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~l 59 (442)
+|...|+..+...|.+. ..+...|+.|+- .+.++...+...|++.|..+|.++.+
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ay--y~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAY--YKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 56788999998888642 112235666666 55789999999999999999998865
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.99 E-value=5.4 Score=34.10 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---------chhhHHHHHHHHHHHcCCCcHH-HHHHHHHH--HHHccC
Q 013489 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL---------KVGNVVRDVYSRATKNCPWVGE-LWVRSLLS--LERSRA 107 (442)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~---------~~~~~~~~v~erAl~~~p~s~~-lW~~y~~~--le~~~~ 107 (442)
+.++..||.....+|++.+.+.++...|.... .-.+.+..-|+.||+..|.... +|..=.-+ +-....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 45778889999999999999998876665321 1234577889999999998754 55432111 111123
Q ss_pred CHHHHHHHHHHHH
Q 013489 108 SEEEISTVFEKSL 120 (442)
Q Consensus 108 ~~~~~~~i~~~al 120 (442)
+..++...|++|.
T Consensus 88 d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 88 DTAEAEEYFEKAT 100 (186)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 3345555555555
No 302
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.94 E-value=1.1 Score=41.48 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=47.9
Q ss_pred HcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..| +.++|..+|+-++...|+++++.++|..|...++++-.|..+|-+|+.
T Consensus 128 ~~G-k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 128 KDG-KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred hcc-chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 445 899999999999999999999999999999999999999999999996
No 303
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.82 E-value=1.4 Score=32.27 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=27.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
.||--..|.+....||.++|++||.| .|.++.|. -|||..
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l 49 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVAL 49 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEE
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEe
Confidence 45544599999999999999999987 67788773 567654
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.18 E-value=1 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~ 55 (442)
.|..-+......|+++.+...|++||..+|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666666777888888888888887775
No 305
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=88.03 E-value=0.73 Score=43.82 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=36.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..-|.++|||++++|.++-.++.+||.|+.+.+...+ .-||++|+
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~ 72 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMA 72 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhc
Confidence 4589999999999999999999999999988765542 25666654
No 306
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.46 E-value=0.21 Score=52.11 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.....|||+|||+..+++.+++..|..+|.|.+|+|-+. .-+..--||||.|.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~ 421 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLL 421 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhh
Confidence 455679999999999999999999999999999988665 24444457777763
No 307
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.91 E-value=11 Score=37.56 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=58.1
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHH
Q 013489 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (442)
Q Consensus 33 e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~ 112 (442)
..+.|++..++..|..||..+|.+..+..+-+.-+.+. .....+..-.+.++..-|.-...|..-...+.. ....+.+
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL-~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL-GEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHH
Confidence 34567888888888888888888877776655443322 233445555777777777666666555443332 3456677
Q ss_pred HHHHHHHHhCChh
Q 013489 113 STVFEKSLLCAFS 125 (442)
Q Consensus 113 ~~i~~~al~~~~~ 125 (442)
...|+.++...+.
T Consensus 446 leay~eale~dp~ 458 (539)
T KOG0548|consen 446 LEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHhcCch
Confidence 7778887776655
No 308
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=39 Score=34.47 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------hh----HH----H-HHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS------GA----ML----E-AWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~------~~----~~----~-~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
...+++.-.-|-++...| ++..|.+++++++..+ .+ .. . +-...+=.....|+.+.|.+||...
T Consensus 172 e~syel~yN~Ac~~i~~g-ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENG-KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred cchHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 345666666677778888 8999999999995442 11 11 1 3333333444579999999999998
Q ss_pred Hhc
Q 013489 244 YSK 246 (442)
Q Consensus 244 l~~ 246 (442)
+..
T Consensus 251 i~~ 253 (652)
T KOG2376|consen 251 IKR 253 (652)
T ss_pred HHh
Confidence 875
No 309
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=86.41 E-value=0.76 Score=40.50 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=38.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+....+.++|-|++..+.+.+|.++|+++|.+....+ .++++||+|.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs 141 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFS 141 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeeh
Confidence 3456789999999999999999999999999854433 3579999995
No 310
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.33 E-value=5.8 Score=34.93 Aligned_cols=55 Identities=25% Similarity=0.182 Sum_probs=36.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD 58 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~ 58 (442)
.|...|+..+...|.+. -..+++...+......|+...+...|++.+..+|.++.
T Consensus 23 ~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 23 EAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 46778888888877532 22234444444446789999999999999999999884
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=86.19 E-value=1.4 Score=43.78 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=40.0
Q ss_pred CCCceEEEcCCCCCCCH------HHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATY------EDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.....|+|.|+|---.. .-|..+|+.+|+|+.+.++.+. .|..+||.|++|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~ 113 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYA 113 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEec
Confidence 33457899999865332 1355789999999999999985 4559999999996
No 312
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.89 E-value=2.8 Score=39.72 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=39.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcc---C-CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSD---V-GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~---~-G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-.|-..+||+++++.++..||.+ . |....|-++.. ..|+.-|=|||.|+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFA 214 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEec
Confidence 47888999999999999999963 2 24456666665 58999999999996
No 313
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.83 E-value=28 Score=31.83 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHhhhhcCchhhHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMV-SARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~-~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
+++.....+++..+++|..---+-..+| ++. +-.++...++..+..++-+|..---..+.+++++.-...-...|
T Consensus 99 ~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 99 EYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444445555666665544445555 555 55555666666666666666555545555555544443333333
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.65 E-value=1.4 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=13.4
Q ss_pred hcCChhhHHHHHHHHHhcCCCC
Q 013489 35 SSGDPGRVQLLYERAITDFPVS 56 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~ 56 (442)
..|+.+.+..+|++.+..+|.+
T Consensus 12 ~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHCHHHHHHHHHHHHHHHSTTS
T ss_pred HccCHHHHHHHHHHHHHHCcCC
Confidence 3456666666666666666653
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.00 E-value=1.8 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~ 55 (442)
++|..........|+++.+...|++++..+|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677777777788888888888888887773
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.96 E-value=2.3 Score=36.91 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=42.7
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
...|++..+..-|.+||..||..+. =..-|.|.... ..-.-+.-.+-||..|...-.||-.|...|++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nra--aa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTST-EERSILYSNRA--AALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhH--HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 3468889999999999999987665 11222222110 00112345566777777777788888887776
No 317
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=84.91 E-value=14 Score=35.02 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=44.5
Q ss_pred cCCCHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 195 MGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 195 ~~~~~~~ar~i~~~~l~~~~~~---~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
-|.-.+.++.+++.+++..|+- +.+|+..+.++...|.++.+..||+.|+..
T Consensus 115 eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred cCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 3446778889999999887754 569999999999999999999999999973
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.88 E-value=23 Score=30.46 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~---~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..+...+.++...| +.+.|.+.|.++...+ ....++|+..+.+-..+|+...+...+.+|-.
T Consensus 37 ~~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56777888999999 9999999999988873 23467999999999999999999999888875
No 319
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=84.51 E-value=2 Score=26.91 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=16.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhc
Q 013489 46 YERAITDFPVSSDLWLDYTQYLDKTL 71 (442)
Q Consensus 46 yERal~~~p~~~~lW~~Y~~~l~~~~ 71 (442)
|.+||..+|.+...|+-|+.||..++
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~g 30 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHG 30 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcC
Confidence 55666666666666666666666544
No 320
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.29 E-value=78 Score=34.89 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhc---h---hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 185 YAYWAHLEQSMGKDMVSARGVWERLLKIS---G---AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~~~~l~~~---~---~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+...+......| +.+.|..++++++... + ....+...++......|+.+.|+..+.+|+..
T Consensus 694 ~~~~a~~~~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677777778 8899999999998762 1 22345667777778889999999999999974
No 321
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.19 E-value=12 Score=34.12 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHhchhHH-----HHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 198 DMVSARGVWERLLKISGAML-----EAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~-----~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
++..|...|...++.+|++. .+|+-=..| ..|+++.|-.+|.+++.
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y--~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY--AQGDYEDAAYIFARVVK 206 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH--hcccchHHHHHHHHHHH
Confidence 45555555555555554432 244332222 24555555555555554
No 322
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=82.99 E-value=17 Score=39.80 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCH
Q 013489 198 DMVSARGVWERLLKI--SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~--~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~ 270 (442)
....++.+|..+... -+....++..|+.+....+...+|..+|..++++. ....+.+-+.+..|.+..|--
T Consensus 93 ~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~--aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNK--AEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhhh
Confidence 467888888888876 44556678888888888888999999999999853 334678889999998887753
No 323
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=82.85 E-value=2.4 Score=40.77 Aligned_cols=37 Identities=35% Similarity=0.581 Sum_probs=34.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeC
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (442)
..++|.+-|||.+-.-+-|.++|+.||.|..|+|...
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 4579999999999989999999999999999999876
No 324
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.83 E-value=34 Score=30.41 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC
Q 013489 40 GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW 90 (442)
Q Consensus 40 ~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~ 90 (442)
..++.=|..+|...|.-+++..-..-|+. ..++.+.+.++|+-.+...|.
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCc
Confidence 44444556666666666665543333333 223444455555555555554
No 325
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.82 E-value=1.2 Score=45.15 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=36.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+|||||+...+...-++.+...||.|.++.... |||+.|.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~ 81 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFL 81 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchh
Confidence 3445999999999999999999999999987764332 8888774
No 326
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=81.77 E-value=15 Score=34.91 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=45.7
Q ss_pred cchhhHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHH
Q 013489 71 LKVGNVVRDVYSRATKNCPWVG---ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~s~---~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~ 131 (442)
+=..+.++.+++..+.++|... ..|+=.++ |+...++++.+-.||+.|+..+-..++++.
T Consensus 116 Gcp~eei~~~L~~li~~IP~A~K~aKYWIC~Ar-l~~~~~~~e~vi~iyEeAi~agAqPieElR 178 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKNIPDAKKLAKYWICLAR-LEPRTGPIEDVIAIYEEAILAGAQPIEELR 178 (353)
T ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHcCCChHHHHH
Confidence 3345678999999999999754 57888888 455578889999999999987765444433
No 327
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=79.65 E-value=4.2 Score=24.38 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 220 WQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 220 w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
|.....+....|++++|..+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66778888889999999999999764
No 328
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=79.45 E-value=2.4 Score=43.30 Aligned_cols=54 Identities=9% Similarity=-0.032 Sum_probs=45.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+..-...|||-.||+.++..++..+|...-.|.+ |.|... -+++-++-|||.|.
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~ 484 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFI 484 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheec
Confidence 3445669999999999999999999998877877 666666 58999999999995
No 329
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=79.34 E-value=1.7 Score=41.11 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=42.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCC-eeE--EEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGG-VSS--IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~--~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...|-..+||++.+-++|-.||..|-. |.- |+++.+ ..|++.|=|||+|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~ 332 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMR 332 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhh
Confidence 348999999999999999999998873 332 677887 78999999999985
No 330
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=79.12 E-value=4.5 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=23.3
Q ss_pred eEEEcCCCCCCCHHH----HHHHhccCC-CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYED----LRRFFSDVG-GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|.|||.+.+... |+.++..|| .|.+|. .|-|+|-|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~ 47 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFP 47 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeC
Confidence 799999999987754 667888888 554441 256777764
No 331
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=79.04 E-value=76 Score=32.06 Aligned_cols=95 Identities=20% Similarity=0.107 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH----HHHHHHHHH---HH---hcchhhHHHHHHHHHHHcCCCcHHHH
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD----LWLDYTQYL---DK---TLKVGNVVRDVYSRATKNCPWVGELW 95 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~----lW~~Y~~~l---~~---~~~~~~~~~~v~erAl~~~p~s~~lW 95 (442)
..+.+.+.--.||-+....+..++......... +-+.|=.++ .. ...+.+.+..++++....+|++ .+|
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-ALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-HHH
Confidence 344444444457888888888888774322221 112222222 11 1223456889999999999975 777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 013489 96 VRSLLSLERSRASEEEISTVFEKSLL 121 (442)
Q Consensus 96 ~~y~~~le~~~~~~~~~~~i~~~al~ 121 (442)
.-+..-+++..++.+.+...|++|+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIE 295 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 77776678888999999999999884
No 332
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=78.55 E-value=3.8 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAIT 51 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~ 51 (442)
|...+......|+++++..+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677777889999999999999664
No 333
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=78.41 E-value=2.9 Score=26.16 Aligned_cols=27 Identities=15% Similarity=-0.099 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcc
Q 013489 80 VYSRATKNCPWVGELWVRSLLSLERSR 106 (442)
Q Consensus 80 v~erAl~~~p~s~~lW~~y~~~le~~~ 106 (442)
.|.+||..-|.....|..|+.+|..+.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~g 30 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHG 30 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcC
Confidence 045677777887788888888777643
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.08 E-value=64 Score=30.68 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Q 013489 182 LRLYAYWAHLEQSM------GKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (442)
Q Consensus 182 ~~l~~~~a~~e~~~------~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~ 229 (442)
.+++..++++-... + +.+.+.+.|..+++.+|+....|..|+.+...
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSE-SSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 46777777777666 5 78899999999999999999999999888755
No 335
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=77.59 E-value=72 Score=30.94 Aligned_cols=67 Identities=13% Similarity=0.010 Sum_probs=53.9
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.+....++....++..+.+ ...+|...|+.+++.-|+.. -|...++.....|+...|-.+++.++..
T Consensus 324 h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3444468999999999988 89999999999998876543 3555666666789999999999999864
No 336
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=76.95 E-value=4.1 Score=39.97 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeC
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (442)
.+..-|-+.+|||++|+++|.+||+.|+ |.++.+++.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~ 44 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR 44 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc
Confidence 3445788999999999999999999996 677776665
No 337
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.82 E-value=24 Score=31.76 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
-|..|++.+.+++..+|.....|..-|....++. +.+.+..=..++++..|+.+.-.............+..|...+.+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445555565555556666667777777777766 888888889999999999887555555555556678889999999
Q ss_pred HHh
Q 013489 243 CYS 245 (442)
Q Consensus 243 al~ 245 (442)
|.+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 954
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.86 E-value=11 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhchhHH
Q 013489 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPRLE 285 (442)
Q Consensus 218 ~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~~~~ 285 (442)
..|...+++..+.|+.+.|.+.|.++..........-+++..+++.--.+|+...+...+.++...+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 36778889999999999999999998875333333345666677777778998888877776644443
No 339
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=74.91 E-value=1.7 Score=40.51 Aligned_cols=53 Identities=15% Similarity=0.035 Sum_probs=46.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+..++.|+|++...+.+.....++...|.+..+.+........++|++++.|+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~ 138 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFA 138 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccc
Confidence 45679999999999999988999999998888887776678999999999986
No 340
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=74.91 E-value=3.8 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=24.4
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS 36 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~ 36 (442)
.+.|..||..|.+... ....|+.||.||...
T Consensus 26 vkkR~~fEy~L~rr~~----~~~Dfl~YI~yE~~L 56 (83)
T PF08640_consen 26 VKKRRDFEYKLQRRGK----KKSDFLRYIEYEMNL 56 (83)
T ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHH
Confidence 4678999999987665 566899999998743
No 341
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.41 E-value=5.5 Score=41.72 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
+|.++.+|-.|+..+.+.++ .+....++-+|+..|||.-.+...++..+-
T Consensus 832 l~~~~~~WR~yl~~lskl~~-~~~~~~~~tkA~~sCpW~K~l~md~ie~l~ 881 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLN-KERSKAASTKALDSCPWAKWLEMDVIEDLP 881 (913)
T ss_pred CCcchhHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCchHHHHHHHHHHhcc
Confidence 67788999999998876554 666778999999999998777777776443
No 342
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.46 E-value=23 Score=31.93 Aligned_cols=80 Identities=19% Similarity=0.057 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 013489 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEK 118 (442)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~ 118 (442)
+..++..|-|||..+|+....|.+-+.-..+ .+..+.+..-..||+...|++..-....-..+.. ...+..+-.++.+
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIKVLQR 103 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHHHHHH
Confidence 4567779999999999999999887654332 4455778889999999999876543332222222 3455667777778
Q ss_pred HH
Q 013489 119 SL 120 (442)
Q Consensus 119 al 120 (442)
|.
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 75
No 343
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=73.05 E-value=67 Score=32.26 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
++..-.+.-.+|+...|.|...|+..+ |.......++..+|++|+..+-...-. ....
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLA---EEeA~Ti~Eae~l~rqAvkAgE~~lg~--s~~~----------------- 240 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLA---EEEASTIVEAEELLRQAVKAGEASLGK--SQFL----------------- 240 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcc---cccccCHHHHHHHHHHHHHHHHHhhch--hhhh-----------------
Confidence 344455777899999999888776643 333566788999999998654221000 0000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHhc
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIEL 230 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~--~~~~w~~~~~~e~~~ 230 (442)
.........+.. .......-+-...|....++| ....|.+.|..+++.+|. ...+....+......
T Consensus 241 ---------~~~g~~~e~~~~--Rdt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 241 ---------QHHGHFWEAWHR--RDTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ---------hcccchhhhhhc--cccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence 000000000000 000001111122444556778 899999999999988654 455777777777778
Q ss_pred ccHHHHHHHHHHH
Q 013489 231 DHINEARSIYKRC 243 (442)
Q Consensus 231 g~~~~ar~i~~ra 243 (442)
+.+..+..++.+-
T Consensus 309 q~Yad~q~lL~kY 321 (539)
T PF04184_consen 309 QAYADVQALLAKY 321 (539)
T ss_pred CCHHHHHHHHHHh
Confidence 8888888888874
No 344
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.02 E-value=44 Score=31.93 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhhhcC---chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHH
Q 013489 162 ETFQRASDYLSEQMKN---TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~---~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~ 238 (442)
..|.-|+.+|+..... ....+++|+.+-. ..+| |+++|.++|.-+++......++|...+-...-.|.+..|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~--fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCY--FHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHH--Hhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 4456666666544422 1235667776543 3567 99999999999998855557788777766666788888887
Q ss_pred HHHHHH
Q 013489 239 IYKRCY 244 (442)
Q Consensus 239 i~~ral 244 (442)
+-.+|-
T Consensus 113 ~~~ka~ 118 (557)
T KOG3785|consen 113 IAEKAP 118 (557)
T ss_pred HHhhCC
Confidence 776654
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.95 E-value=7.3 Score=21.18 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPV 55 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~ 55 (442)
.|...+......|+++.+...|++++...|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3555555556667777777777777766653
No 346
>COG4499 Predicted membrane protein [Function unknown]
Probab=72.37 E-value=23 Score=33.94 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHh-chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH---hCCH--hhH
Q 013489 200 VSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE---YGTL--EDF 273 (442)
Q Consensus 200 ~~ar~i~~~~l~~-~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~---~G~~--~~~ 273 (442)
.+-..|.+.+.-. ++++...|+.+. +|++..|..|=.. .+++.-++-++...-+. .|++ +..
T Consensus 300 ~kkeNi~NnislkSd~~~llYWi~~G-----RGe~~eAinIAr~-------L~D~d~~~~Al~k~~eevksn~~lsg~~r 367 (434)
T COG4499 300 TKKENILNNISLKSDDNYLLYWIYSG-----RGEFKEAINIARN-------LDDNDLTLLALTKLYEEVKSNTDLSGDKR 367 (434)
T ss_pred HHHHHHhhccccccchhHHHHHHHhc-----CccHHHHhhHHHh-------CCcchhHHHHHHHHHHHHhcccCCCchHH
Confidence 4455566655533 666677787654 4666666555332 23444444444444322 2333 345
Q ss_pred HHHHHhhchhHHHHHHHH
Q 013489 274 DHSVQKVTPRLEELRLFR 291 (442)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ 291 (442)
++.+..++..+++....+
T Consensus 368 ~e~lk~~n~~lqd~~k~~ 385 (434)
T COG4499 368 QELLKEYNKKLQDYTKKL 385 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556667777776665544
No 347
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=71.93 E-value=60 Score=27.42 Aligned_cols=194 Identities=16% Similarity=0.076 Sum_probs=87.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Q 013489 29 YLKYEQSSGDPGRVQLLYERAIT--DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR 106 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~--~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~ 106 (442)
........+....+...++.++. ..+.....|.....+.... +....+..++..++...+.....+...........
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 33333445556666666666665 4555555555555544422 22344566666666655544222222221022234
Q ss_pred CCHHHHHHHHHHHHhCChh--hHH-HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchh-hH
Q 013489 107 ASEEEISTVFEKSLLCAFS--TFE-EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG-LL 182 (442)
Q Consensus 107 ~~~~~~~~i~~~al~~~~~--~~~-~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~-~~ 182 (442)
+..+.+...|.+++...+. ... .+...... ......+..++..+...+...+. ..
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~~~~~~~~~~~~~ 202 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGAL---------------------LEALGRYEEALELLEKALKLNPDDDA 202 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH---------------------HHHhcCHHHHHHHHHHHHhhCcccch
Confidence 5666666666666543221 000 00000000 00001122222222222222222 22
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..+..........+ +...+...+..++...|.....+..........|....+...+.+++.
T Consensus 203 ~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 203 EALLNLGLLYLKLG-KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHhhHHHHHcc-cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444455 567777777777777665333333332222244566777777777665
No 348
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=71.57 E-value=81 Score=28.75 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHH-HHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVR 97 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~-----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~-lW~~ 97 (442)
..|=+=+.-+...|+.+.|...|+.....+|.++ .+=+.|+.|.. ++.+.+....+|.++..|.+.. -|..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~---~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN---GEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3455555556788999999999999999999876 35555665532 4557799999999999998764 5666
Q ss_pred HHHHH
Q 013489 98 SLLSL 102 (442)
Q Consensus 98 y~~~l 102 (442)
||.-+
T Consensus 112 YlkgL 116 (254)
T COG4105 112 YLKGL 116 (254)
T ss_pred HHHHH
Confidence 66544
No 349
>PRK04841 transcriptional regulator MalT; Provisional
Probab=70.43 E-value=1.7e+02 Score=32.14 Aligned_cols=199 Identities=14% Similarity=0.033 Sum_probs=109.5
Q ss_pred HhcCChhhHHHHHHHHHhcCCC-----CHHHH--HH-HHHHHHHhcchhhHHHHHHHHHHHcCCCcHH---HHH-HHHHH
Q 013489 34 QSSGDPGRVQLLYERAITDFPV-----SSDLW--LD-YTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---LWV-RSLLS 101 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~-----~~~lW--~~-Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~---lW~-~y~~~ 101 (442)
...|+++.+..+++++....+. ...+. .. ...++....++.+.+...+++|+...|.... .+. ..+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 4567888888888887654322 11111 11 1112222345667788999999886554321 111 11122
Q ss_pred HHHccCCHHHHHHHHHHHHhCChh--hHH--HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 013489 102 LERSRASEEEISTVFEKSLLCAFS--TFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~--~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~ 177 (442)
.....++.+.+...+++++..... ... ......+..+.. . ..++......+++++.........
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~---~---------~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF---A---------QGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH---H---------CCCHHHHHHHHHHHHHHHHHhccc
Confidence 233468888899999988853111 000 011111111100 0 134555556666666655432211
Q ss_pred -chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch----h-HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 178 -TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG----A-MLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 178 -~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~----~-~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
......++...+.+....| +++.|+..+..++.... . ....+...+.+....|+.+.|...+.+++.
T Consensus 568 ~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred cccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111223444566777778 99999999999987621 1 233444556677778999999999998864
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.34 E-value=76 Score=27.93 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCChhhHHHHHHHH-HHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHH
Q 013489 106 RASEEEISTVFEKSLLCAFSTFEEYLDLF-LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~~~~~~~~~~-~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l 184 (442)
++.++++..-|..||...++.......+. ..+...+ +.......+++.|.+. +..+++..+.
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~-------------iKl~k~e~aI~dcsKa----iel~pty~kA 170 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL-------------IKLRKWESAIEDCSKA----IELNPTYEKA 170 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH-------------HHhhhHHHHHHHHHhh----HhcCchhHHH
Confidence 57778888888888876655433332222 2221111 1111122333333332 2234444444
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
...-|..+.+.. .++.|..=|.+++..+|..-+
T Consensus 171 l~RRAeayek~e-k~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 171 LERRAEAYEKME-KYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHHhCcchHH
Confidence 445566666665 788888888888888886544
No 351
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=68.49 E-value=1.7 Score=37.93 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=45.9
Q ss_pred CCCCCceEEEcC----CCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 387 GFTDECTAFLSN----INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 387 ~~~~~~~v~v~n----l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
......+++.|+ |...++++.+...|+.-|++..+++.++ ..|+.+.++|+++
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTY 132 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhh
Confidence 344566889999 8888999999999999999999999998 4699999999875
No 352
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=67.16 E-value=1.5e+02 Score=32.82 Aligned_cols=97 Identities=14% Similarity=0.226 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhc---CC--hhhHHHHHHHHHhcC------CCCHHHHHHHHH-HHHHhcchhhHHHHHHHHHHH--c
Q 013489 22 KFQQYMIYLKYEQSS---GD--PGRVQLLYERAITDF------PVSSDLWLDYTQ-YLDKTLKVGNVVRDVYSRATK--N 87 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~---g~--~~~~~~lyERal~~~------p~~~~lW~~Y~~-~l~~~~~~~~~~~~v~erAl~--~ 87 (442)
-+..|..|+.|.... |+ ......+.|||+... ..++.+-.-|+- ++... ...++++|..... .
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~---~~d~~d~f~~m~~kgI 109 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELREE---LQDAEDFFSYLENKGI 109 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHH---HhhHHHHHHHHHhccc
Confidence 345799999998742 33 456677889887753 345553233321 11111 2346778877776 3
Q ss_pred CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013489 88 CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (442)
Q Consensus 88 ~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~ 122 (442)
.+....++..|...+++ .+...++..+|+..++.
T Consensus 110 g~~lalfYe~~a~~lE~-k~~~keA~~v~q~Giq~ 143 (974)
T KOG1166|consen 110 GTTLALFYEAYAKHLER-KEYFKEAKEVFQLGIQN 143 (974)
T ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 46666788888887776 35588899999999854
No 353
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.03 E-value=17 Score=32.54 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=46.9
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
...+ |.+.+-++|++++..-|....-|.....+...-|+++.|-.-|...+.
T Consensus 6 ~~~~-D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESG-DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccC-ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3445 788999999999999999999999999999999999999999999885
No 354
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.43 E-value=89 Score=28.70 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCC
Q 013489 188 WAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT 251 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~l~~~~~~---~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~ 251 (442)
+.+..+..| +.+.|-.+|..+++.+|++ ++..+.........|+.+.|+.+|...+.+ .|..
T Consensus 184 LGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~-YP~t 248 (262)
T COG1729 184 LGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR-YPGT 248 (262)
T ss_pred HHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence 355666778 9999999999999997665 578999999999999999999999999984 5543
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.31 E-value=33 Score=31.87 Aligned_cols=30 Identities=20% Similarity=0.025 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 75 NVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 75 ~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
..+..+..|+++..|-+...|...+..+..
T Consensus 296 neAi~l~qr~ltldpL~e~~nk~lm~~la~ 325 (361)
T COG3947 296 NEAIQLHQRALTLDPLSEQDNKGLMASLAT 325 (361)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 335555555555555555555555544443
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=59.92 E-value=2.6e+02 Score=30.34 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------hhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------------------GAMLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~---------------------~~~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
.+|..|+++....| +++.|..+|..+-..+ ..+.......+......|++.+|...|-
T Consensus 913 ~L~~WWgqYlES~G-emdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVG-EMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 58888998888888 8999999988876432 1112345556677777888888888887
Q ss_pred HHH
Q 013489 242 RCY 244 (442)
Q Consensus 242 ral 244 (442)
||-
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 764
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.62 E-value=49 Score=31.47 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
-|++|++++...+...+...-++..-|.-+.++. .+..|..=.+.++..+..+...+..-..--...|.+..|.+-|++
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~ 190 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET 190 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence 3455555555544433322223333333333333 344454445555555444444444444444444555555555555
Q ss_pred HHh
Q 013489 243 CYS 245 (442)
Q Consensus 243 al~ 245 (442)
+|.
T Consensus 191 vL~ 193 (536)
T KOG4648|consen 191 VLA 193 (536)
T ss_pred HHh
Confidence 553
No 358
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=58.55 E-value=3.1e+02 Score=30.88 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhh
Q 013489 75 NVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL 146 (442)
Q Consensus 75 ~~~~~v~erAl~~~p~s~~-lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~ 146 (442)
+..+.-|++|+.|+..++. .|-..+.+.++ ++ +|..||..-......+..++.+|.+.|++..-
T Consensus 890 D~~L~ry~~AL~hLs~~~~~~~~e~~n~I~k-h~-------Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~ 954 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHLSECGETYFPECKNYIKK-HG-------LYDEALALYKPDSEKQKVIYEAYADHLREELM 954 (1265)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHh-cc-------cchhhhheeccCHHHHHHHHHHHHHHHHHhcc
Confidence 4466788888887765543 55555554444 22 45555544334455566777778777765543
No 359
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.56 E-value=10 Score=34.23 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=33.2
Q ss_pred eEEEcCCCCC------------CCHHHHHHHhccCCCeeEEEEee-CC----CCCCCcceEEEEe
Q 013489 393 TAFLSNINLK------------ATYEDLRRFFSDVGGVSSIRILH-DK----FTGKSRVVQSDIY 440 (442)
Q Consensus 393 ~v~v~nl~~~------------~~~~~l~~~f~~~G~i~~~~~~~-~~----~~g~~~g~~fv~f 440 (442)
||++.+||.. .+++.|+..|..||.|..|.|+. |+ .+|+..|..|-.|
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 7777776643 46788999999999999988754 22 3666655444433
No 360
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=56.65 E-value=14 Score=39.27 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+.+|||+|+.++....|...|..||.|..|.+-. | -.|+||.|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~ye 499 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYE 499 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--Ccceeeecc
Confidence 4466899999999999999999999999998876533 2 248888774
No 361
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=55.25 E-value=24 Score=34.04 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
....++..+|+|.++++++++.+|..-|...+..... ++.+-++.+.+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~ 459 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQL 459 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeeccc
Confidence 4445899999999999999999999888765553322 23344666543
No 362
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.88 E-value=1.3e+02 Score=27.65 Aligned_cols=121 Identities=10% Similarity=-0.014 Sum_probs=74.0
Q ss_pred hhHHHHHHhhcCCCCChHh--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEK--FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~--~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
++..+|..|+.-...|.+. .+.=..|+.+....+....+.-+||..-..+|..+.+-..-+.... +.++++.+..++
T Consensus 152 r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL 230 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHH
Confidence 4556677776543332221 1223334444444456777888899888877766666555554333 345678899999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 82 erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
+.|+...|..++.-...+-.......+.+...+...+.....+.
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 99999888888877776653333344445555555565555444
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=54.67 E-value=1.7e+02 Score=27.30 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 27 ~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
..+++-....|..+.+...+++.+...|.+..+|..-+......+ ....+...|++.=
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-RQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-CchHHHHHHHHHH
Confidence 344444445567777788888888888888888888887766443 3344566665543
No 364
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.17 E-value=1.7e+02 Score=28.65 Aligned_cols=92 Identities=23% Similarity=0.182 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCC---HHHHHHHHHH
Q 013489 43 QLLYERAITDFPVSSDLWLDYTQYLDKTLKV-GNVVRDVYSRATKNCPWVGELWVRSLLSLERSRAS---EEEISTVFEK 118 (442)
Q Consensus 43 ~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~-~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~---~~~~~~i~~~ 118 (442)
..+-+-||..+|.+...|..-.-.|.+.... ...-..+.+++++..|.+..-|...=...+....+ ..+=.+.-.+
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~ 174 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTK 174 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHH
Confidence 4566889999999999999988777755433 45567899999999999988887643333332222 2222334456
Q ss_pred HHhCChhh--HHHHHHHH
Q 013489 119 SLLCAFST--FEEYLDLF 134 (442)
Q Consensus 119 al~~~~~~--~~~~~~~~ 134 (442)
++...|.+ .|.|..+.
T Consensus 175 ~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 175 LINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHhccchhhhHHHHHHHH
Confidence 66556653 34555444
No 365
>PRK10941 hypothetical protein; Provisional
Probab=52.47 E-value=95 Score=28.73 Aligned_cols=56 Identities=14% Similarity=-0.035 Sum_probs=32.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~ 92 (442)
.++.+++..+-||.|...|.++.-|.+-.-.+. +.+....+..=++..+..||...
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCch
Confidence 456666666666666666666666665544332 33444556666666666666543
No 366
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=52.13 E-value=1.6e+02 Score=25.67 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCch--hhH
Q 013489 106 RASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD--GLL 182 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~-~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~--~~~ 182 (442)
.++..+++..|++++.-.+. .....+.+-..-+ - + ..+-.|...|+.....++ ...
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf--a---------------~----~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF--A---------------I----QEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH--h---------------h----ccHHHHHHHHHHHhhcCCccCCC
Confidence 57788899999999976654 2222222221110 0 0 112233344443332211 233
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHH----HHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN----EARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~----~ar~i~~ral~ 245 (442)
+-.+.|++.....| .+..|+.-|+-++...|. ..--+.|..|...+|... +.+.|++++..
T Consensus 161 d~~Ll~aR~laa~g-~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 161 DGHLLFARTLAAQG-KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CchHHHHHHHHhcC-CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 45777899888888 899999999999999887 555678889998888443 45566777664
No 367
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=52.09 E-value=1.9e+02 Score=26.43 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=55.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhc------chh-
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL-WLDYTQYLDKTL------KVG- 74 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~l-W~~Y~~~l~~~~------~~~- 74 (442)
+|-..||......|.+ +-.-++-+..+--..+.++.+.++...+|-+..+|.++++ |..||.-+.... .+.
T Consensus 52 ~A~~~fe~l~~~~p~s-~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~ 130 (254)
T COG4105 52 EAIKYFEALDSRHPFS-PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQS 130 (254)
T ss_pred HHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHH
Confidence 3556677777777643 2223333333333467889999999999999999999873 555554433211 111
Q ss_pred --hHHHHHHHHHHHcCCCc
Q 013489 75 --NVVRDVYSRATKNCPWV 91 (442)
Q Consensus 75 --~~~~~v~erAl~~~p~s 91 (442)
..+..-|...|..+|+|
T Consensus 131 ~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 131 AARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 23555667777777776
No 368
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.87 E-value=5.4e+02 Score=31.58 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHhcchh-hHHHHHHHHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-----------------SDLWLDYTQYLDKTLKVG-NVVRDVYSRAT 85 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~-----------------~~lW~~Y~~~l~~~~~~~-~~~~~v~erAl 85 (442)
++.+.-+.+..+.|+-..++.+.+..|..+=.+ ...-+.+..|+....+.. ..+...|..|+
T Consensus 1703 ~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ 1782 (2382)
T KOG0890|consen 1703 EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK 1782 (2382)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q ss_pred HcCC-C-cHHHHHH--HHHHHHHccCCHHH----------HHHHHHHHHhCChh----hHHHHHHHHHHHHHHHHHHhhc
Q 013489 86 KNCP-W-VGELWVR--SLLSLERSRASEEE----------ISTVFEKSLLCAFS----TFEEYLDLFLTRIDGLRRRILF 147 (442)
Q Consensus 86 ~~~p-~-s~~lW~~--y~~~le~~~~~~~~----------~~~i~~~al~~~~~----~~~~~~~~~~~~~~~l~rr~~~ 147 (442)
...| | ++..+.. |..+++....+.-+ +..-|.+++..+-. .+-..+.+|+.+-.....--..
T Consensus 1783 ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~ 1862 (2382)
T KOG0890|consen 1783 AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKA 1862 (2382)
T ss_pred HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccC
Q ss_pred cCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-chhHHH--HHHHHH
Q 013489 148 SGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLE--AWQSYI 224 (442)
Q Consensus 148 ~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~~~~~--~w~~~~ 224 (442)
....-...+...+....++++..+ +.+..+..|.++-.++.-.-+.+-.+...++.. .-.++. +|+-.+
T Consensus 1863 ~r~ei~s~~~~~in~~i~~~~~~l--------p~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a 1934 (2382)
T KOG0890|consen 1863 PRGEIVSKNLKLINSLIEEALEHL--------PTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAA 1934 (2382)
T ss_pred ChhhhhhhhHHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHH
Q ss_pred HHHHhcc-cHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 013489 225 SMEIELD-HINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (442)
Q Consensus 225 ~~e~~~g-~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~f 263 (442)
-+-...- ...++..|+.++.. .......+......+
T Consensus 1935 ~~kS~~p~R~~R~keIL~k~~~---~~~~~~~l~~da~~l 1971 (2382)
T KOG0890|consen 1935 LSKSNVPSRVERCKEILTKSRR---QKPDYKKLLSDAYDL 1971 (2382)
T ss_pred HHhcccHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHH
No 369
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=51.51 E-value=1.2e+02 Score=23.85 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=55.2
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHHHHHHH---HHHHHhc----cc-------HHHHHHHHHHHHhcccCCCChHHHHH
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLEAWQSY---ISMEIEL----DH-------INEARSIYKRCYSKRFTGTGSEDICH 258 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~---~~~e~~~----g~-------~~~ar~i~~ral~~~~~~~~~~~i~~ 258 (442)
...| |-.+|.+|.++++..+++....|+-. ..+.... .| .-.+.+.|.++.. +.++. -.
T Consensus 7 ~~rG-nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~--Lsp~~----A~ 79 (111)
T PF04781_consen 7 FARG-NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE--LSPDS----AH 79 (111)
T ss_pred HHcc-CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc--cChhH----HH
Confidence 3456 88999999999999988776655221 1122111 11 2346677777775 44333 34
Q ss_pred HHHHHHHHhCCHhhHHHHHHhhchhH
Q 013489 259 AWLRFEREYGTLEDFDHSVQKVTPRL 284 (442)
Q Consensus 259 ~~~~fE~~~G~~~~~~~~~~~~~~~~ 284 (442)
.....-...|....|++|+.+|...|
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55677778899999999998886544
No 370
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.30 E-value=1.9e+02 Score=31.13 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
++---...|.-|+.+....-.+.+....++..|+.+....| +.+.|-.-|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kg-df~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKG-DFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHccc
Confidence 33334567788888776665555666789999999999999 999999999998876
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.03 E-value=62 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=18.8
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
.++| +.+.|+...+.+|+..|++..
T Consensus 12 ykl~-~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 12 YKLG-EYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHTT--HHHHHHHHHHHHHHTTS-HH
T ss_pred HHhh-hHHHHHHHHHHHHhhCCCcHH
Confidence 5666 899999999999998887654
No 372
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=49.98 E-value=35 Score=35.35 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGV-SSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-|-+.|+|++++-+||.+||..|-.+ .+|++-+. +.|..-|=|-|-|.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfe 917 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFE 917 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeec
Confidence 67899999999999999999999765 46666665 78999998888874
No 373
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=49.56 E-value=89 Score=29.04 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+...++.+...+ +.+.+.+.+++.+..+|-.-.+|...+......|+...|...|++.-.
T Consensus 155 ~l~~lae~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3344555555556 788999999999999998889999999999999999999988888653
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.59 E-value=37 Score=21.59 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=16.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 188 WAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
+|+.+..+| +.+.||++++..+..
T Consensus 5 LA~ayie~G-d~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMG-DLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHHc
Confidence 455556677 788888888887743
No 375
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=48.00 E-value=24 Score=32.99 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=27.3
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHhccCCCeeEEEEee
Q 013489 391 ECTAFLSNINLKATYED----L--RRFFSDVGGVSSIRILH 425 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~----l--~~~f~~~G~i~~~~~~~ 425 (442)
..-|||-+||+.+..++ | .++|.+||.|..|.+-+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk 154 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK 154 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc
Confidence 34899999999886665 2 37899999998886544
No 376
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=47.07 E-value=12 Score=37.87 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=37.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFS-DVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..-...|+|.||-.-.|.-.|+.++. .+|.|.+. .+|+ .+..|||.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~ys 489 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYS 489 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecc
Confidence 34456899999988899999999999 67777776 4442 5668899874
No 377
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.79 E-value=52 Score=18.46 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 220 WQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 220 w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
|...+....+.|+++.|..+|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555666666666666554
No 378
>PF13041 PPR_2: PPR repeat family
Probab=45.87 E-value=54 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 219 ~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.|...+....+.|+++.|.++|++....
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4555555555556666666666665554
No 379
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.57 E-value=32 Score=30.78 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=47.9
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG 92 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~ 92 (442)
...+|.+-+..+|.++|..-|.+..-|.....|.++.+ ..+.+-..|+..++..|...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCcccc
Confidence 45678888899999999999999999999999887654 45667888888888887654
No 380
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=4.2e+02 Score=28.55 Aligned_cols=46 Identities=4% Similarity=-0.187 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~ 228 (442)
..+|..|..+..+.+ +.+....++.+|+..+|-.-.+.+.+++..-
T Consensus 836 ~~~WR~yl~~lskl~-~~~~~~~~~tkA~~sCpW~K~l~md~ie~l~ 881 (913)
T KOG1972|consen 836 NSKWRDYLEALSKLL-NKERSKAASTKALDSCPWAKWLEMDVIEDLP 881 (913)
T ss_pred hhHHHHHHHHHHHhh-hhhhhHHHHHHHhhcCchHHHHHHHHHHhcc
Confidence 357777777777777 5777777788888777765555666655443
No 381
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.89 E-value=90 Score=29.80 Aligned_cols=83 Identities=16% Similarity=0.017 Sum_probs=48.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH------ccCC
Q 013489 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER------SRAS 108 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~------~~~~ 108 (442)
++|.++.++..|-+++...|.++-+..+-+.-..+. +....+..-++-|+.. =..|+..+-+ ..+.
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~-K~FA~AE~DC~~AiaL-------d~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ-KSFAQAEEDCEAAIAL-------DKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHhHHHHHHh-------hHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999998887776654322211 1122233334444332 2223322221 2355
Q ss_pred HHHHHHHHHHHHhCChh
Q 013489 109 EEEISTVFEKSLLCAFS 125 (442)
Q Consensus 109 ~~~~~~i~~~al~~~~~ 125 (442)
..++..-++++|...+.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 66777778888876655
No 382
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.60 E-value=1.5e+02 Score=27.82 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=62.0
Q ss_pred cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHH
Q 013489 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (442)
Q Consensus 195 ~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (442)
.+ +...|..+|..++...|...++-+-|++.....|+.+.|..++...=. ....+.... ..+++.|-..-.+..++.
T Consensus 147 ~e-~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~~~~~~~-l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 147 AE-DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQDKAAHG-LQAQIELLEQAAATPEIQ 223 (304)
T ss_pred cc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cchhhHHHH-HHHHHHHHHHHhcCCCHH
Confidence 45 899999999999999999999999999999999999999999987322 111111112 456888877777666666
Q ss_pred HHHHhh
Q 013489 275 HSVQKV 280 (442)
Q Consensus 275 ~~~~~~ 280 (442)
....++
T Consensus 224 ~l~~~~ 229 (304)
T COG3118 224 DLQRRL 229 (304)
T ss_pred HHHHHH
Confidence 555444
No 383
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=43.12 E-value=66 Score=19.12 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 219 AWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 219 ~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+...+.+....|+++.|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 345566677777888899998888885
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.02 E-value=17 Score=34.45 Aligned_cols=87 Identities=16% Similarity=0.023 Sum_probs=66.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCCHHHH
Q 013489 35 SSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--ELWVRSLLSLERSRASEEEI 112 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~--~lW~~y~~~le~~~~~~~~~ 112 (442)
..|.++.++..|-++|..+|.+..+...-..-+.+. +-+..+..=|.+|+...|.+. .-|..|++.++ +..+++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl-~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll---g~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL-KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL---GNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeec-cCCchhhhhhhhhhccCcccccccchhhHHHHHh---hchHHH
Confidence 357899999999999999998888777666544433 334557788999999888764 58888876554 677888
Q ss_pred HHHHHHHHhCChh
Q 013489 113 STVFEKSLLCAFS 125 (442)
Q Consensus 113 ~~i~~~al~~~~~ 125 (442)
...|..+.+.+++
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 8888888877655
No 385
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=41.59 E-value=37 Score=27.37 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Q 013489 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~ 229 (442)
+.+.|.+||+.++..+|+++.+.+.+++-...
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 56899999999999999999999999885433
No 386
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.06 E-value=31 Score=32.80 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHhcccHHHHHHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE--AWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~--~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
|+.|++.+..++..+++...++..-+.+..++. .+..|..=+..++.++|+... -|..|++ +..|+.+.++..|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEAAHDLA 206 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHHHHHHH
Confidence 566777776666666776667777777777777 778888889999999888765 5666654 44788888999998
Q ss_pred HHHh
Q 013489 242 RCYS 245 (442)
Q Consensus 242 ral~ 245 (442)
.|+.
T Consensus 207 ~a~k 210 (377)
T KOG1308|consen 207 LACK 210 (377)
T ss_pred HHHh
Confidence 8886
No 387
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=40.03 E-value=57 Score=17.87 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 220 WQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 220 w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
|...++...+.|+.+.|..+|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4444555555555555555555544
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=39.82 E-value=1.4e+02 Score=21.85 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
....|..+|.++|+..++..+-|..+.-+-..+.+.-+.|..++-|+.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999998777666666665555555555556666666654
No 389
>PF12854 PPR_1: PPR repeat
Probab=39.68 E-value=59 Score=19.04 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWER 208 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~ 208 (442)
.|...+.-..+.| +++.|.++|++
T Consensus 9 ty~~lI~~~Ck~G-~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAG-RVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHh
Confidence 4445555556666 67777766665
No 390
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=39.47 E-value=80 Score=30.23 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=39.5
Q ss_pred CCCCCCceEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 386 KGFTDECTAFLSNINLKA-TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
.+..+.+-+.|-+|.... +-+.|-.+|..||.|..|.+++-+ .|-|.|+.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVem 332 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEM 332 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEc
Confidence 445667899999998765 667899999999999999998864 35666653
No 391
>PRK14136 recX recombination regulator RecX; Provisional
Probab=39.13 E-value=3.4e+02 Score=25.61 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCC---cH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 77 VRDVYSRATKNCPW---VG-ELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 77 ~~~v~erAl~~~p~---s~-~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
...++.+|+..|.. +. +|... |....-+.+.+..++.++...++.+=..|...|... ++..
T Consensus 161 ~~~lk~kAL~lLSrReRSe~ELr~K----L~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~------R~~k----- 225 (309)
T PRK14136 161 ARSLKGRALGYLSRREYSRAELARK----LAPYADESDSVEPLLDALEREGWLSDARFAESLVHR------RASR----- 225 (309)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHH----HHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHH------Hhhc-----
Confidence 56788999887743 32 34333 333345557788999998887776544455444311 1100
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc-
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD- 231 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g- 231 (442)
+.-......+.++++. +.. |-..+..++ .. .++.|+.++++-+...+.....+...+.|....|
T Consensus 226 -kGp~rIrqELrQKGId---------~eL--IEqALeeie--ED-E~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGF 290 (309)
T PRK14136 226 -VGSARIVSELKRHAVG---------DAL--VESVGAQLR--ET-EFERAQAVWRKKFGALPQTPAERAKQARFLAARGF 290 (309)
T ss_pred -hhHHHHHHHHHHcCCC---------HHH--HHHHHHhcc--Hh-HHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCC
Confidence 0000000111111110 010 111111111 11 3567777777766555444556777788888888
Q ss_pred cHHHHHHHHHHH
Q 013489 232 HINEARSIYKRC 243 (442)
Q Consensus 232 ~~~~ar~i~~ra 243 (442)
.++.++.+++..
T Consensus 291 S~D~I~~vLk~~ 302 (309)
T PRK14136 291 SSATIVKLLKVG 302 (309)
T ss_pred CHHHHHHHHHhc
Confidence 788787777654
No 392
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=36.62 E-value=1.6e+02 Score=21.14 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=10.9
Q ss_pred cccHHHHHHHHHHHHh
Q 013489 230 LDHINEARSIYKRCYS 245 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~ 245 (442)
.|+++.|..+|..||.
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4667777777777763
No 393
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.52 E-value=72 Score=22.03 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=14.3
Q ss_pred HHHHHHhccCCCeeEEE
Q 013489 406 EDLRRFFSDVGGVSSIR 422 (442)
Q Consensus 406 ~~l~~~f~~~G~i~~~~ 422 (442)
.+||++|++.|.|.-+-
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 57999999999986654
No 394
>PF13041 PPR_2: PPR repeat family
Probab=36.21 E-value=1.1e+02 Score=19.36 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--chhH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI--SGAM 216 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--~~~~ 216 (442)
.|...+....+.| +++.|.++|+++.+. .|+.
T Consensus 5 ~yn~li~~~~~~~-~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 5 TYNTLISGYCKAG-KFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred HHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCH
Confidence 4566666777888 999999999999987 4553
No 395
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=34.85 E-value=81 Score=24.24 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=21.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEE
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIR 422 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~ 422 (442)
.+.|-|-+.|+. ....+-..|++||.|.+..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEee
Confidence 457888899988 5667788899999998764
No 396
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.88 E-value=3.8e+02 Score=24.60 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK-RFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 213 ~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~-~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.++.....+..|-...-..|+..|..+|+.+.+. .+....-...++..+.+-. -|+++++.++..
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 4555566666666665567888888888887653 1111111123344444322 377777766543
No 397
>KOG2690 consensus Uncharacterized conserved protein, contains BSD domain [Function unknown]
Probab=33.38 E-value=73 Score=29.82 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHH-HHHHHHHHHhC
Q 013489 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEE-ISTVFEKSLLC 122 (442)
Q Consensus 77 ~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~-~~~i~~~al~~ 122 (442)
++.+|++.|-.--.-..+|..|....+.. ...+. -..+..+|++.
T Consensus 193 ir~ly~~lVP~~VshetFW~RYFy~v~kl-eq~e~~r~~l~~rai~~ 238 (331)
T KOG2690|consen 193 IRKLYEDLVPSEVSHETFWHRYFYKVEKL-EQEEAKRKELLSRAISS 238 (331)
T ss_pred HHHHHHHhCcccccHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhc
Confidence 56666665544333446777776544442 22222 33456666654
No 398
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.36 E-value=33 Score=30.51 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=28.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEE
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIR 422 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~ 422 (442)
.+..++|+-|+|..++++.|..+.+++|.+..+-
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4456999999999999999999999999665543
No 399
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.65 E-value=2.2e+02 Score=21.23 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=46.5
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhh
Q 013489 204 GVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLED 272 (442)
Q Consensus 204 ~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~ 272 (442)
.-++..+..+|++.......+......|+++.|...+-..+... ....-...=...+.+....|.-+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcCCCCh
Confidence 34667777899999999999999989999999999888888642 212223344677777788887554
No 400
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.55 E-value=1.3e+02 Score=27.68 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=31.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGV-SSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-|+++|||.++.-.||+..+...|.+ .++.+ .| ++|-||+.|.
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----kg-~~~k~flh~~ 375 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----KG-HFGKCFLHFG 375 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEee-----ec-CCcceeEecC
Confidence 59999999999999999988877643 23322 12 4677888773
No 401
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.06 E-value=88 Score=23.29 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=29.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEe
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIY 440 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f 440 (442)
-|||||++..+.+.--..+...++.-.-+-+..+ .. ..||+|-+.
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEe
Confidence 6999999998887766666655554433333333 22 678998664
No 402
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.93 E-value=1.8e+02 Score=20.91 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=8.5
Q ss_pred ccHHHHHHHHHHHH
Q 013489 231 DHINEARSIYKRCY 244 (442)
Q Consensus 231 g~~~~ar~i~~ral 244 (442)
|+++.|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 55666666666665
No 403
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=29.81 E-value=1.8e+02 Score=28.00 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=34.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-|.|.+|-..+++.||-+..+.||+|.-|..+..+ .-+.|+|.
T Consensus 33 vvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefe 75 (494)
T KOG1456|consen 33 VVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFE 75 (494)
T ss_pred eEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeec
Confidence 89999999999999999999999999887655432 24556653
No 404
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=28.79 E-value=4.7e+02 Score=24.13 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 013489 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER-SRASEEEISTVFEKS 119 (442)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~-~~~~~~~~~~i~~~a 119 (442)
++..+.+-+-...|+.+.+..-++.++.. ..+.+.+.+++.+.+++++.+..-|...+..+-. .......+-..+...
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYL 183 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 34444444455678888888888888876 4455678899999999887666555555543321 112223444555554
Q ss_pred H
Q 013489 120 L 120 (442)
Q Consensus 120 l 120 (442)
+
T Consensus 184 l 184 (278)
T PF08631_consen 184 L 184 (278)
T ss_pred H
Confidence 4
No 405
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.73 E-value=1.7e+02 Score=24.08 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHhchh
Q 013489 198 DMVSARGVWERLLKISGA 215 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~ 215 (442)
+++.++.+.+.+++..|+
T Consensus 86 eY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 86 EYSKSLRYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHHHHHHhhCCC
Confidence 555555555555555444
No 406
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=28.13 E-value=2.6e+02 Score=27.56 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhhhcC----chh--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---chhHHHH---HHHHHH
Q 013489 158 SLIRETFQRASDYLSEQMKN----TDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SGAMLEA---WQSYIS 225 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~----~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~---~~~~~~~---w~~~~~ 225 (442)
..++.+++.|.+++...+.- .+. .-+.+-....-++-+| +++.|....+.-|.. +++.... .....+
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLG-df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLG-DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeec-cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccch
Confidence 35677888887776443321 111 0012222222333345 677666665544433 5554432 233333
Q ss_pred HHHhcccHHHHHHHHHHHHh
Q 013489 226 MEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 226 ~e~~~g~~~~ar~i~~ral~ 245 (442)
.....|+++-|-+.|++++.
T Consensus 244 ~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred hhhhhcccHhHHHHHHHHHH
Confidence 44445667777777776653
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.87 E-value=3e+02 Score=25.90 Aligned_cols=54 Identities=17% Similarity=0.075 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 188 WAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
-+..+...| .+..|-++.+++++.+|-+-..|..+.......||--.+.+-|++
T Consensus 285 va~~yle~g-~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAG-KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344555566 788888888888888888778888888888777764334433333
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.67 E-value=2.5e+02 Score=23.10 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hchhHHHHHHHHHHHH-HhcccHHHHHHHHHHHHhcccCCCChH
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLK-ISGAMLEAWQSYISME-IELDHINEARSIYKRCYSKRFTGTGSE 254 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~-~~~~~~~~w~~~~~~e-~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (442)
.+-..|+-+-.....++.+...+++..++ .+|..---++.|+.+- .+.++++.++.+.+..+.. .+++++
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Q 106 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQ 106 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHH
Confidence 34445655555544477888999999997 4666555666666654 3578999999999999973 445443
No 409
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=27.15 E-value=1.9e+02 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=18.9
Q ss_pred hcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 013489 229 ELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFER 265 (442)
Q Consensus 229 ~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~ 265 (442)
..|+++.|..+|..||. .|..++..|.
T Consensus 18 ~~g~y~eAl~~Y~~aie----------~l~~~lk~e~ 44 (77)
T cd02683 18 QEGRFQEALVCYQEGID----------LLMQVLKGTK 44 (77)
T ss_pred HhccHHHHHHHHHHHHH----------HHHHHHhhCC
Confidence 35788888888988874 4455566654
No 410
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=26.63 E-value=1.5e+02 Score=28.18 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCCceEEEcCC----CCCCC-------HHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNI----NLKAT-------YEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl----~~~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|.+.|+ .+..+ .++|+.-...||.|.+|.|.-. .+.|.+-|.|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~ 322 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFR 322 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeC
Confidence 355679999997 22334 2455666789999999865432 25688888885
No 411
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=26.13 E-value=5e+02 Score=23.61 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
.....+|+.|.+.....+.+ +|-.+-+.+.|+-|.+.+.++++.|.++-..++..
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777777765543433 34456677778777777665788777766655543
No 412
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=25.54 E-value=97 Score=27.77 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=37.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEE
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQS 437 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~f 437 (442)
......+++++++..++...+...|..+|.+....+..........++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 34556899999999999999999999999997777666543333444433
No 413
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=24.75 E-value=59 Score=25.73 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLK---------ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~---------~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++.|-|+|.. .+...|.+.|+.|.++ +++.+.++ . -+.|++.|.|.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~-~-gh~g~aiv~F~ 64 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK-Q-GHTGFAIVEFN 64 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET-T-EEEEEEEEE--
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC-C-CCcEEEEEEEC
Confidence 4555666443 3457899999999876 46555553 2 46899999996
No 414
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.62 E-value=4e+02 Score=27.67 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 187 YWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
.-|++....+ ..++|-.+|++.+..+|+ +....|++-..+.|-...|+.+++.
T Consensus 47 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 47 KKAEFLHDVN-ETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHhhhhhhhh-hhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3455556667 788999999999999998 6677888888888988999998884
No 415
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=24.56 E-value=2e+02 Score=24.88 Aligned_cols=45 Identities=18% Similarity=0.001 Sum_probs=31.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCC--CCCCcceEEEEeeC
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF--TGKSRVVQSDIYTL 442 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~g~~~g~~fv~f~~ 442 (442)
++-+.-.|.|+|-... ...|.+...-+...+. +|.+| |.|+.|.+
T Consensus 84 rE~lHWlV~nIPg~~~--------~~~G~~i~~Y~~P~Pp~~tG~HR-yVfll~rQ 130 (185)
T KOG3346|consen 84 REWLHWLVTNIPGTDG--------ISKGQEISEYLGPGPPKGTGLHR-YVFLLYRQ 130 (185)
T ss_pred eeEEEEEEEeecCCcc--------ccCCeEeeeeeCCCCCCCCCceE-EEEEEEEc
Confidence 4556788999998765 4567666655554444 78877 88888864
No 416
>PRK10941 hypothetical protein; Provisional
Probab=24.24 E-value=5.7e+02 Score=23.62 Aligned_cols=56 Identities=16% Similarity=-0.080 Sum_probs=45.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 190 HLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 190 ~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
......+ +++.|..+-+.++...|+++.-|..-.-+....|....|+.=|+..+..
T Consensus 189 ~~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 189 AALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3444556 8999999999999999998888887777777888888888888888873
No 417
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=24.11 E-value=7.5e+02 Score=24.95 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHhhhhcCchhhHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhchhH--HH--HHHHHHHHHHhcccHHHHHHHHH
Q 013489 167 ASDYLSEQMKNTDGLLRLYAY-WAHLEQSMGKDMVSARGVWERLLKISGAM--LE--AWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~-~a~~e~~~~~~~~~ar~i~~~~l~~~~~~--~~--~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
|..+|.......|... +|+. -++++...| +++.|.+.|++++...... .. .+.+.+-.....++.++|-..|.
T Consensus 252 a~~lL~~~~~~yP~s~-lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSA-LFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHhCCCcH-HHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 3333333333334433 6665 567877778 9999999999988542222 21 23333334445679999999999
Q ss_pred HHHhcccCCCChHHHH
Q 013489 242 RCYSKRFTGTGSEDIC 257 (442)
Q Consensus 242 ral~~~~~~~~~~~i~ 257 (442)
+.+. .+.|...+|
T Consensus 330 ~L~~---~s~WSka~Y 342 (468)
T PF10300_consen 330 RLLK---ESKWSKAFY 342 (468)
T ss_pred HHHh---ccccHHHHH
Confidence 9886 357776555
No 418
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.93 E-value=4.6e+02 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 013489 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~ 266 (442)
.++++.|-.+|..|+. .|...+.+|..
T Consensus 23 a~nY~eA~~lY~~ale----------YF~~~lKYE~~ 49 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALE----------YFLHALKYEAN 49 (439)
T ss_pred hhchHHHHHHHHHHHH----------HHHHHHHhhhc
Confidence 3567777777777763 34455666654
No 419
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=23.89 E-value=1.3e+02 Score=16.16 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 013489 187 YWAHLEQSMGKDMVSARGVWE 207 (442)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~~ 207 (442)
..+......| +++.|+.+++
T Consensus 6 ~la~~~~~~G-~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQG-DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcC-CHHHHHHHHh
Confidence 3455555666 6777776654
No 420
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=23.37 E-value=3.9e+02 Score=21.32 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhcc---cHHHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGK-DMVSARGVWERLLKI-SGAMLEAWQSYISMEIELD---HINEARSIYKRCY 244 (442)
Q Consensus 184 l~~~~a~~e~~~~~-~~~~ar~i~~~~l~~-~~~~~~~w~~~~~~e~~~g---~~~~ar~i~~ral 244 (442)
.|...-.+....|. ....-|.++..|.+. .-++.+.|+.+++.--..- +-+.|..||++..
T Consensus 43 aWK~lK~~L~~~G~~~~~spr~~~r~A~~~glI~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 43 AWKTLKDYLEYEGISECNSPRDVFREAFKAGLIDDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP 108 (124)
T ss_dssp HHHHHHHHHHHCTSSCCTSHHHHHHHHHHTTSSSHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHHHHcCCCCCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 34444444444443 344558899998887 5577889999998765432 5677888888765
No 421
>COG1017 Hmp Hemoglobin-like flavoprotein [Energy production and conversion]
Probab=22.28 E-value=3e+02 Score=22.63 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhchh
Q 013489 236 ARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTPR 283 (442)
Q Consensus 236 ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~~ 283 (442)
...+|+++-+. ..+.+..|..+-+.+-....+++.+..++.++-.+
T Consensus 39 l~niFN~~nQ~--~G~Q~~aLA~ai~ayA~nIdnl~~l~~~v~rIa~K 84 (150)
T COG1017 39 LKNIFNMANQK--NGDQPKALANAILAYAKNIDNLEALLPVVERIAHK 84 (150)
T ss_pred HHHHHhHhhhc--ccccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45666666653 35566677777777777777777777666665433
No 422
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.27 E-value=2.7e+02 Score=22.62 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHh-------cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013489 24 QQYMIYLKYEQS-------SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK 69 (442)
Q Consensus 24 ~~w~~y~~~e~~-------~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~ 69 (442)
..|-.|.+-.+. ..+.+.+..||+..+..+|.+-.+-+.+|+-+..
T Consensus 70 tk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 70 TKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp --HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 345555554432 1245556667777777777766666666665554
No 423
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=22.19 E-value=4.4e+02 Score=25.20 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHH----------HhccCCCeeEEEEeeC
Q 013489 386 KGFTDECTAFLSNINLKATYEDLRR----------FFSDVGGVSSIRILHD 426 (442)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~----------~f~~~G~i~~~~~~~~ 426 (442)
..+...-+|.-.|||.+. +.+||. +|..+|.|..|.+...
T Consensus 32 s~~dfSLSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~p 81 (353)
T PF15053_consen 32 SGDDFSLSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIP 81 (353)
T ss_pred CCCcceeeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCC
Confidence 334556689999999885 455654 6888999998877553
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.92 E-value=3e+02 Score=23.67 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 199 MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 199 ~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
.....+..++.++..|+ +.++..|+......|+.++|+.+..++.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
No 425
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.92 E-value=1.7e+02 Score=16.27 Aligned_cols=21 Identities=5% Similarity=0.105 Sum_probs=9.0
Q ss_pred HHHHHHhcccHHHHHHHHHHH
Q 013489 223 YISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 223 ~~~~e~~~g~~~~ar~i~~ra 243 (442)
.+....+.|+.+.|..+|+..
T Consensus 7 ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333333344444444444443
No 426
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.43 E-value=1e+02 Score=28.32 Aligned_cols=35 Identities=6% Similarity=0.063 Sum_probs=28.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeC
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD 426 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 426 (442)
....|||||++++..-+..++...-.+..+.+|..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 37889999999999999999987766666666655
No 427
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=20.17 E-value=72 Score=30.11 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=27.8
Q ss_pred ceEEEcCCCCCCCHHH-HH--HHhccCCCeeEEEEeeCC
Q 013489 392 CTAFLSNINLKATYED-LR--RFFSDVGGVSSIRILHDK 427 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~-l~--~~f~~~G~i~~~~~~~~~ 427 (442)
.-+||-+|+.....+. |. ..|.+||.|..|.+-.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~ 116 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDP 116 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCc
Confidence 4789999998875544 43 578899999999887765
Done!