Query 013489
Match_columns 442
No_of_seqs 354 out of 2602
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1E-28 3.6E-33 255.0 28.9 244 20-281 299-568 (679)
2 4e6h_A MRNA 3'-END-processing 99.9 6.2E-25 2.1E-29 226.9 28.4 268 3-282 84-462 (679)
3 2ond_A Cleavage stimulation fa 99.9 1.5E-23 5.1E-28 198.2 28.4 241 19-280 4-267 (308)
4 2uy1_A Cleavage stimulation fa 99.9 4E-24 1.4E-28 214.7 24.7 245 4-282 156-412 (493)
5 2ooe_A Cleavage stimulation fa 99.9 6E-22 2.1E-26 201.4 29.2 240 22-282 229-491 (530)
6 2ooe_A Cleavage stimulation fa 99.9 4.8E-21 1.7E-25 194.7 27.6 271 3-281 30-383 (530)
7 2uy1_A Cleavage stimulation fa 99.9 1.2E-20 4E-25 189.4 24.0 216 2-246 12-242 (493)
8 2ond_A Cleavage stimulation fa 99.8 6.4E-19 2.2E-23 166.3 24.8 217 3-246 34-270 (308)
9 4eqf_A PEX5-related protein; a 99.6 2.4E-13 8.2E-18 130.6 21.1 237 6-245 48-309 (365)
10 1w3b_A UDP-N-acetylglucosamine 99.5 3E-12 1E-16 124.0 26.9 266 3-278 51-329 (388)
11 3hym_B Cell division cycle pro 99.5 5.8E-12 2E-16 118.3 27.7 264 3-274 40-325 (330)
12 3hym_B Cell division cycle pro 99.5 4.5E-12 1.5E-16 119.1 26.5 222 22-245 21-264 (330)
13 1w3b_A UDP-N-acetylglucosamine 99.5 7.6E-12 2.6E-16 121.1 28.5 266 3-278 85-363 (388)
14 1fch_A Peroxisomal targeting s 99.5 3.4E-12 1.2E-16 122.3 24.8 269 7-279 48-355 (368)
15 4h7y_A Dual specificity protei 99.5 1.3E-13 4.4E-18 110.6 11.8 60 184-245 63-122 (161)
16 3ieg_A DNAJ homolog subfamily 99.5 2E-11 6.7E-16 115.9 27.3 214 4-245 22-262 (359)
17 4eqf_A PEX5-related protein; a 99.5 9.6E-12 3.3E-16 119.3 23.9 244 26-279 34-306 (365)
18 2pl2_A Hypothetical conserved 99.5 3.1E-12 1.1E-16 113.9 19.0 198 22-244 4-212 (217)
19 2y4t_A DNAJ homolog subfamily 99.5 2E-11 7E-16 120.2 26.5 232 7-245 14-285 (450)
20 4fxv_A ELAV-like protein 1; RN 99.5 7.2E-14 2.5E-18 107.8 6.8 53 389-441 17-69 (99)
21 3cv0_A Peroxisome targeting si 99.5 1E-11 3.5E-16 116.5 22.5 219 24-245 22-268 (327)
22 2y4t_A DNAJ homolog subfamily 99.4 7.3E-11 2.5E-15 116.3 29.2 201 41-245 10-239 (450)
23 2xpi_A Anaphase-promoting comp 99.4 5.2E-11 1.8E-15 121.9 28.7 264 3-277 290-573 (597)
24 2xpi_A Anaphase-promoting comp 99.4 3.7E-11 1.3E-15 122.9 27.3 251 26-280 275-542 (597)
25 2lkz_A RNA-binding protein 5; 99.4 1.2E-13 4.2E-18 105.3 6.3 51 391-441 9-61 (95)
26 3s7r_A Heterogeneous nuclear r 99.4 2.4E-13 8.3E-18 102.4 7.5 53 389-441 9-61 (87)
27 2khc_A Testis-specific RNP-typ 99.4 8.9E-13 3E-17 105.4 10.7 56 386-441 35-90 (118)
28 3ieg_A DNAJ homolog subfamily 99.4 2.9E-10 9.9E-15 107.8 30.0 213 22-246 2-217 (359)
29 1fch_A Peroxisomal targeting s 99.4 4.8E-11 1.7E-15 114.1 24.6 238 36-279 38-310 (368)
30 1s79_A Lupus LA protein; RRM, 99.4 2.6E-13 9E-18 105.3 7.0 52 389-441 9-60 (103)
31 2lxi_A RNA-binding protein 10; 99.4 6.8E-14 2.3E-18 106.3 3.5 50 392-441 2-52 (91)
32 3s8s_A Histone-lysine N-methyl 99.4 3.5E-13 1.2E-17 106.0 7.5 51 391-441 6-56 (110)
33 2rs2_A Musashi-1, RNA-binding 99.4 3.4E-13 1.1E-17 106.2 6.8 54 388-441 22-75 (109)
34 2m2b_A RNA-binding protein 10; 99.4 4E-13 1.4E-17 109.5 7.4 54 388-441 20-75 (131)
35 2cq4_A RNA binding motif prote 99.4 5.3E-13 1.8E-17 106.1 7.3 54 388-441 22-75 (114)
36 2ho1_A Type 4 fimbrial biogene 99.4 1.7E-10 5.7E-15 104.3 24.8 203 19-245 32-237 (252)
37 2jrs_A RNA-binding protein 39; 99.4 1.1E-12 3.6E-17 103.1 7.7 57 385-441 20-76 (108)
38 2cqg_A TDP-43, TAR DNA-binding 99.4 1.3E-12 4.4E-17 101.8 7.9 53 389-441 13-65 (103)
39 2h6f_A Protein farnesyltransfe 99.4 1.5E-10 5.2E-15 112.0 24.1 203 19-243 93-302 (382)
40 1x4e_A RNA binding motif, sing 99.4 1.2E-12 4E-17 98.1 7.2 52 390-441 4-55 (85)
41 3uq3_A Heat shock protein STI1 99.4 8.2E-10 2.8E-14 99.6 27.7 224 21-280 3-233 (258)
42 2vq2_A PILW, putative fimbrial 99.4 4.4E-10 1.5E-14 99.1 25.4 202 20-245 5-210 (225)
43 2j8a_A Histone-lysine N-methyl 99.4 6E-13 2.1E-17 104.5 5.7 50 392-441 3-56 (136)
44 2la6_A RNA-binding protein FUS 99.4 1.6E-12 5.4E-17 100.4 8.1 53 389-441 11-71 (99)
45 1x4b_A Heterogeneous nuclear r 99.4 8.8E-13 3E-17 105.1 6.8 53 389-441 25-77 (116)
46 2dgs_A DAZ-associated protein 99.4 2E-12 6.9E-17 99.9 8.6 53 389-441 8-60 (99)
47 1xnf_A Lipoprotein NLPI; TPR, 99.4 5E-10 1.7E-14 102.2 26.0 218 3-246 23-244 (275)
48 3ns6_A Eukaryotic translation 99.3 3.1E-13 1E-17 104.6 3.5 52 390-441 5-62 (100)
49 3vtx_A MAMA; tetratricopeptide 99.3 2.2E-10 7.6E-15 98.4 22.1 167 21-245 3-169 (184)
50 2dgp_A Bruno-like 4, RNA bindi 99.3 1.1E-12 3.7E-17 102.8 6.6 53 389-441 11-63 (106)
51 1x5u_A Splicing factor 3B subu 99.3 2.2E-12 7.4E-17 100.8 8.2 53 389-441 13-65 (105)
52 4h7y_A Dual specificity protei 99.3 6.4E-12 2.2E-16 100.8 10.9 103 20-125 10-126 (161)
53 1x4h_A RNA-binding protein 28; 99.3 2.3E-12 7.8E-17 101.8 8.2 53 389-441 13-65 (111)
54 3p5t_L Cleavage and polyadenyl 99.3 5.6E-13 1.9E-17 101.0 4.4 50 392-441 2-53 (90)
55 1p27_B RNA-binding protein 8A; 99.3 1.5E-12 5E-17 102.0 6.9 53 389-441 21-73 (106)
56 2q7f_A YRRB protein; TPR, prot 99.3 4.8E-11 1.6E-15 107.0 17.9 216 24-266 24-239 (243)
57 2dnm_A SRP46 splicing factor; 99.3 2.7E-12 9.3E-17 99.9 8.2 53 389-441 11-63 (103)
58 3cv0_A Peroxisome targeting si 99.3 6E-10 2.1E-14 104.3 25.9 218 57-280 21-266 (327)
59 2j76_E EIF-4B, EIF4B, eukaryot 99.3 8.6E-13 2.9E-17 102.1 5.2 52 389-441 17-69 (100)
60 2dh8_A DAZ-associated protein 99.3 2.2E-12 7.6E-17 100.8 7.6 53 389-441 14-66 (105)
61 1oo0_B CG8781-PA, drosophila Y 99.3 1.8E-12 6.2E-17 102.2 7.0 53 389-441 24-76 (110)
62 2cq0_A Eukaryotic translation 99.3 2.4E-12 8.3E-17 100.2 7.5 54 388-441 12-65 (103)
63 1wg5_A Heterogeneous nuclear r 99.3 3.2E-12 1.1E-16 99.6 8.2 52 389-441 13-65 (104)
64 1uaw_A Mouse-musashi-1; RNP-ty 99.3 9.8E-13 3.4E-17 96.5 4.9 50 392-441 1-50 (77)
65 3n9u_C Cleavage and polyadenyl 99.3 1.4E-12 4.9E-17 109.3 6.4 53 389-441 53-107 (156)
66 3bs9_A Nucleolysin TIA-1 isofo 99.3 1.9E-12 6.4E-17 97.4 6.4 53 389-441 4-56 (87)
67 2cqd_A RNA-binding region cont 99.3 5.2E-12 1.8E-16 100.6 9.2 53 389-441 15-67 (116)
68 2e5h_A Zinc finger CCHC-type a 99.3 5.2E-12 1.8E-16 96.5 8.8 52 390-441 15-66 (94)
69 2cpz_A CUG triplet repeat RNA- 99.3 3.7E-12 1.3E-16 101.3 8.1 53 389-441 23-75 (115)
70 2div_A TRNA selenocysteine ass 99.3 2.6E-12 8.8E-17 99.2 7.0 53 389-441 7-60 (99)
71 2cph_A RNA binding motif prote 99.3 4E-12 1.4E-16 99.6 8.1 53 389-441 13-66 (107)
72 1whw_A Hypothetical protein ri 99.3 3.4E-12 1.2E-16 98.5 7.5 53 389-441 6-58 (99)
73 3mdf_A Peptidyl-prolyl CIS-tra 99.3 2.3E-12 7.8E-17 96.5 6.3 53 389-441 5-57 (85)
74 2h6f_A Protein farnesyltransfe 99.3 3.5E-10 1.2E-14 109.4 23.4 221 3-245 115-347 (382)
75 2dnh_A Bruno-like 5, RNA bindi 99.3 5.1E-12 1.7E-16 98.7 8.5 52 389-441 13-64 (105)
76 3md1_A Nuclear and cytoplasmic 99.3 2.9E-12 1E-16 95.4 6.7 50 392-441 2-51 (83)
77 2dnz_A Probable RNA-binding pr 99.3 4.7E-12 1.6E-16 96.9 8.0 52 390-441 4-55 (95)
78 2cpy_A RNA-binding protein 12; 99.3 3.3E-12 1.1E-16 101.4 7.3 52 389-441 13-65 (114)
79 2mss_A Protein (musashi1); RNA 99.3 1.7E-12 6E-17 94.6 5.2 49 393-441 1-49 (75)
80 2xs2_A Deleted in azoospermia- 99.3 1.7E-12 5.8E-17 100.9 5.4 52 389-441 7-58 (102)
81 2cqc_A Arginine/serine-rich sp 99.3 4E-12 1.4E-16 97.3 7.5 53 389-441 13-65 (95)
82 1wez_A HnRNP H', FTP-3, hetero 99.3 3.1E-12 1E-16 99.2 6.8 51 389-441 13-63 (102)
83 2kxn_B Transformer-2 protein h 99.3 4.3E-12 1.5E-16 102.9 7.9 53 389-441 44-96 (129)
84 2do4_A Squamous cell carcinoma 99.3 6.1E-12 2.1E-16 97.3 8.5 52 389-441 15-66 (100)
85 2dng_A Eukaryotic translation 99.3 5.1E-12 1.7E-16 98.3 8.1 52 389-441 13-64 (103)
86 2dgo_A Cytotoxic granule-assoc 99.3 5.1E-12 1.8E-16 100.5 8.0 53 389-441 13-65 (115)
87 3fp2_A TPR repeat-containing p 99.3 6.2E-10 2.1E-14 112.1 25.4 267 3-280 43-404 (537)
88 1wi8_A EIF-4B, eukaryotic tran 99.3 5.3E-12 1.8E-16 98.4 7.8 51 390-441 14-65 (104)
89 2x1f_A MRNA 3'-END-processing 99.3 4.2E-12 1.4E-16 97.4 7.0 51 391-441 2-52 (96)
90 2q7f_A YRRB protein; TPR, prot 99.3 2.4E-10 8.2E-15 102.3 19.7 201 3-231 41-241 (243)
91 1iqt_A AUF1, heterogeneous nuc 99.3 1.4E-12 4.9E-17 95.1 4.1 49 393-441 1-49 (75)
92 3ucg_A Polyadenylate-binding p 99.3 4.8E-12 1.6E-16 95.6 7.0 51 391-441 6-56 (89)
93 2cqb_A Peptidyl-prolyl CIS-tra 99.3 4.1E-12 1.4E-16 98.7 6.5 52 390-441 11-62 (102)
94 2dhg_A TRNA selenocysteine ass 99.3 5.6E-12 1.9E-16 98.3 7.2 52 389-441 7-59 (104)
95 3d2w_A TAR DNA-binding protein 99.3 4.5E-12 1.5E-16 95.6 6.4 47 390-441 10-56 (89)
96 2nlw_A Eukaryotic translation 99.3 5.2E-12 1.8E-16 98.6 6.9 51 389-441 13-69 (105)
97 1x5s_A Cold-inducible RNA-bind 99.3 5.5E-12 1.9E-16 97.9 7.0 53 389-441 10-62 (102)
98 2lmi_A GRSF-1, G-rich sequence 99.3 3.9E-12 1.3E-16 99.7 6.1 52 389-441 9-63 (107)
99 2dnn_A RNA-binding protein 12; 99.3 4.3E-12 1.5E-16 99.3 6.2 51 389-441 14-64 (109)
100 1x5t_A Splicing factor 3B subu 99.3 4.5E-12 1.5E-16 97.3 6.2 52 390-441 4-56 (96)
101 1wel_A RNA-binding protein 12; 99.3 5.2E-12 1.8E-16 101.9 6.7 53 389-441 23-75 (124)
102 2db1_A Heterogeneous nuclear r 99.3 5.7E-12 2E-16 100.5 6.9 52 389-441 15-69 (118)
103 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.4E-11 4.7E-16 101.6 9.3 53 389-441 61-113 (140)
104 2cpe_A RNA-binding protein EWS 99.3 8.3E-12 2.9E-16 98.9 7.6 53 389-441 13-73 (113)
105 3ex7_B RNA-binding protein 8A; 99.3 7.1E-12 2.4E-16 101.4 7.2 53 389-441 20-72 (126)
106 1x5o_A RNA binding motif, sing 99.3 1.9E-11 6.7E-16 96.9 9.5 52 389-441 23-74 (114)
107 2ywk_A Putative RNA-binding pr 99.3 6.6E-12 2.2E-16 96.1 6.5 52 389-441 14-65 (95)
108 2err_A Ataxin-2-binding protei 99.3 8.4E-12 2.9E-16 98.1 6.9 52 388-441 26-77 (109)
109 3u4t_A TPR repeat-containing p 99.3 5E-10 1.7E-14 102.2 20.1 114 4-124 22-139 (272)
110 2hgm_A HNRPF protein, heteroge 99.3 1.1E-11 3.7E-16 99.3 7.6 51 389-441 40-92 (126)
111 2hgl_A HNRPF protein, heteroge 99.3 5.9E-12 2E-16 102.6 6.1 52 389-441 42-96 (136)
112 2d9p_A Polyadenylate-binding p 99.3 1.3E-11 4.6E-16 95.9 7.9 51 389-441 13-63 (103)
113 2dnl_A Cytoplasmic polyadenyla 99.2 6.3E-12 2.1E-16 99.7 5.9 52 389-441 6-60 (114)
114 3q2s_C Cleavage and polyadenyl 99.2 6.6E-12 2.3E-16 112.3 6.6 52 390-441 67-120 (229)
115 2krb_A Eukaryotic translation 99.2 6.6E-12 2.3E-16 93.0 5.6 48 392-441 2-55 (81)
116 1u6f_A Tcubp1, RNA-binding pro 99.2 8.4E-12 2.9E-16 102.8 6.8 54 388-441 39-92 (139)
117 2fy1_A RNA-binding motif prote 99.2 1.1E-11 3.7E-16 98.6 7.1 52 389-441 5-56 (116)
118 4abn_A Tetratricopeptide repea 99.2 8.9E-10 3E-14 110.0 22.7 103 22-127 101-213 (474)
119 1p1t_A Cleavage stimulation fa 99.2 2.5E-12 8.5E-17 100.3 3.2 52 390-441 7-58 (104)
120 4f02_A Polyadenylate-binding p 99.2 7.2E-12 2.5E-16 111.2 6.6 51 391-441 15-65 (213)
121 1sjq_A Polypyrimidine tract-bi 99.2 8.6E-12 3E-16 96.1 6.0 47 389-441 14-60 (105)
122 2gw1_A Mitochondrial precursor 99.2 1.1E-09 3.9E-14 109.4 23.3 249 3-279 207-474 (514)
123 2cpf_A RNA binding motif prote 99.2 6.4E-12 2.2E-16 96.8 5.3 53 389-441 3-58 (98)
124 4f25_A Polyadenylate-binding p 99.2 6.6E-12 2.3E-16 99.7 5.6 49 391-441 5-53 (115)
125 2ki2_A SS-DNA binding protein 99.2 2.7E-12 9.1E-17 97.3 3.0 50 392-441 2-51 (90)
126 3ulh_A THO complex subunit 4; 99.2 1.5E-11 5E-16 96.4 7.1 52 389-441 27-78 (107)
127 2dis_A Unnamed protein product 99.2 1.1E-11 3.8E-16 97.5 6.3 53 389-441 6-60 (109)
128 2pl2_A Hypothetical conserved 99.2 2.5E-09 8.6E-14 94.9 22.4 201 53-270 1-201 (217)
129 2cqp_A RNA-binding protein 12; 99.2 8.4E-12 2.9E-16 96.1 5.3 52 390-441 14-65 (98)
130 2dha_A FLJ20171 protein; RRM d 99.2 7.6E-12 2.6E-16 100.0 5.1 52 389-441 21-76 (123)
131 2dgv_A HnRNP M, heterogeneous 99.2 2E-11 6.7E-16 92.8 7.1 51 389-441 6-56 (92)
132 3u4t_A TPR repeat-containing p 99.2 1.6E-09 5.4E-14 98.9 21.3 199 23-246 3-208 (272)
133 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1.5E-11 5E-16 104.5 7.0 53 389-441 70-122 (165)
134 2cq1_A PTB-like protein L; RRM 99.2 2.9E-11 9.9E-16 93.2 8.0 46 390-441 14-59 (101)
135 3uq3_A Heat shock protein STI1 99.2 1.5E-09 5.3E-14 97.7 20.8 207 3-246 23-236 (258)
136 3fp2_A TPR repeat-containing p 99.2 1.2E-09 3.9E-14 110.1 22.1 249 3-280 220-488 (537)
137 2kt5_A RNA and export factor-b 99.2 2.7E-11 9.4E-16 97.6 8.1 53 388-441 32-84 (124)
138 4a8x_A RNA-binding protein wit 99.2 1.2E-11 4.2E-16 93.1 5.3 52 390-441 3-55 (88)
139 1h2v_Z 20 kDa nuclear CAP bind 99.2 2.2E-11 7.6E-16 102.4 7.4 53 389-441 37-89 (156)
140 2dgw_A Probable RNA-binding pr 99.2 3.1E-11 1.1E-15 91.5 7.4 51 389-441 8-58 (91)
141 2do0_A HnRNP M, heterogeneous 99.2 3.5E-11 1.2E-15 95.4 8.0 52 389-441 13-64 (114)
142 2kn4_A Immunoglobulin G-bindin 99.2 2.5E-11 8.5E-16 102.3 7.4 53 389-441 68-120 (158)
143 2jwn_A Embryonic polyadenylate 99.2 1.5E-11 5.1E-16 99.2 5.6 52 390-441 35-86 (124)
144 2lea_A Serine/arginine-rich sp 99.2 1.1E-11 3.7E-16 101.4 4.6 53 389-441 45-97 (135)
145 2ek1_A RNA-binding protein 12; 99.2 9.7E-12 3.3E-16 95.2 4.0 51 391-441 15-65 (95)
146 2cq3_A RNA-binding protein 9; 99.2 7.4E-11 2.5E-15 91.7 9.0 51 389-441 13-63 (103)
147 2hgn_A Heterogeneous nuclear r 99.2 1.5E-11 5.2E-16 100.5 5.2 51 389-441 44-94 (139)
148 2gw1_A Mitochondrial precursor 99.2 3.1E-09 1.1E-13 106.1 23.2 220 3-245 255-477 (514)
149 4gyw_A UDP-N-acetylglucosamine 99.2 1.3E-09 4.3E-14 113.9 20.6 170 18-245 4-173 (723)
150 2ad9_A Polypyrimidine tract-bi 99.2 4.5E-11 1.5E-15 94.5 7.1 46 390-441 30-75 (119)
151 1l3k_A Heterogeneous nuclear r 99.2 2.6E-11 8.9E-16 106.0 6.5 53 389-441 11-63 (196)
152 2cqi_A Nucleolysin TIAR; RNA r 99.2 6.3E-11 2.2E-15 92.1 7.8 51 389-441 13-63 (103)
153 3r27_A HnRNP L, heterogeneous 99.2 5.7E-11 1.9E-15 90.5 7.2 45 391-441 21-65 (100)
154 2ho1_A Type 4 fimbrial biogene 99.2 7.6E-09 2.6E-13 93.2 22.5 190 3-220 55-246 (252)
155 3mkr_A Coatomer subunit epsilo 99.2 1.3E-08 4.5E-13 94.6 24.6 218 7-253 49-269 (291)
156 1wf0_A TDP-43, TAR DNA-binding 99.2 3.4E-11 1.1E-15 90.7 5.6 47 390-441 4-50 (88)
157 2dgx_A KIAA0430 protein; RRM d 99.1 5E-11 1.7E-15 91.3 6.3 50 389-441 7-60 (96)
158 1wex_A Hypothetical protein (r 99.1 1.2E-10 4.1E-15 90.3 8.4 45 391-441 15-59 (104)
159 4g1t_A Interferon-induced prot 99.1 1.8E-08 6E-13 99.9 26.5 235 3-245 156-400 (472)
160 1x4d_A Matrin 3; structural ge 99.1 6E-11 2.1E-15 91.3 6.4 46 390-441 14-60 (102)
161 1fj7_A Nucleolin RBD1, protein 99.1 7.5E-12 2.6E-16 97.0 1.2 52 389-441 15-66 (101)
162 1x4a_A Splicing factor, argini 99.1 2.1E-10 7.2E-15 90.1 9.5 50 389-441 20-69 (109)
163 1x4f_A Matrin 3; structural ge 99.1 1.1E-10 3.9E-15 91.1 7.7 46 390-441 24-70 (112)
164 2cpi_A CCR4-NOT transcription 99.1 1E-10 3.4E-15 92.2 6.3 53 389-441 13-71 (111)
165 2a3j_A U1 small nuclear ribonu 99.1 1.2E-10 4E-15 93.7 6.6 48 391-441 29-80 (127)
166 2vq2_A PILW, putative fimbrial 99.1 2.6E-08 8.9E-13 87.5 22.5 202 52-278 3-206 (225)
167 4abn_A Tetratricopeptide repea 99.1 1.4E-08 4.9E-13 101.2 22.9 219 39-279 84-314 (474)
168 2lcw_A RNA-binding protein FUS 98.7 1.1E-11 3.9E-16 98.6 0.0 53 389-441 5-65 (116)
169 2cpx_A Hypothetical protein FL 99.1 4.8E-11 1.7E-15 94.7 3.6 53 389-441 23-75 (115)
170 2fc9_A NCL protein; structure 99.1 2.4E-10 8.3E-15 88.4 7.4 49 389-441 13-61 (101)
171 2f3j_A RNA and export factor b 99.1 1.7E-10 6E-15 98.7 7.0 53 388-441 85-137 (177)
172 2jvo_A Nucleolar protein 3; nu 99.1 1.8E-10 6E-15 90.2 6.5 46 388-441 28-73 (108)
173 3as5_A MAMA; tetratricopeptide 99.1 2.4E-08 8.1E-13 84.7 20.3 167 22-246 7-173 (186)
174 2ytc_A PRE-mRNA-splicing facto 99.1 3.4E-10 1.2E-14 84.5 7.3 47 389-441 10-56 (85)
175 2wbr_A GW182, gawky, LD47780P; 99.1 1.3E-10 4.6E-15 85.3 4.7 45 391-441 7-51 (89)
176 2voo_A Lupus LA protein; RNA-b 99.0 2.2E-10 7.4E-15 99.6 6.7 50 391-441 109-158 (193)
177 2la4_A Nuclear and cytoplasmic 99.0 8.4E-11 2.9E-15 91.0 3.4 46 390-441 26-71 (101)
178 2xnq_A Nuclear polyadenylated 99.0 3.5E-10 1.2E-14 86.7 6.8 45 389-441 20-65 (97)
179 2fc8_A NCL protein; structure 99.0 3.9E-10 1.3E-14 87.4 7.1 50 389-441 13-62 (102)
180 4i17_A Hypothetical protein; T 99.0 6.8E-08 2.3E-12 85.8 22.7 197 22-245 6-208 (228)
181 3vtx_A MAMA; tetratricopeptide 99.0 2.7E-08 9.4E-13 85.1 19.3 156 3-220 23-178 (184)
182 3pgw_S U1-70K; protein-RNA com 99.0 3E-10 1E-14 111.3 7.5 52 390-441 101-152 (437)
183 1x4c_A Splicing factor, argini 99.0 5.8E-10 2E-14 87.3 7.8 46 389-441 13-58 (108)
184 3lqv_A PRE-mRNA branch site pr 99.0 4.9E-10 1.7E-14 88.8 7.3 48 391-441 8-55 (115)
185 2e5j_A Methenyltetrahydrofolat 99.0 5.4E-10 1.8E-14 85.7 7.0 47 390-441 18-64 (97)
186 2cpj_A Non-POU domain-containi 99.0 6.8E-10 2.3E-14 85.4 7.7 47 389-441 13-59 (99)
187 3ro2_A PINS homolog, G-protein 99.0 5.7E-08 1.9E-12 90.6 22.3 122 157-280 199-329 (338)
188 1nu4_A U1A RNA binding domain; 99.0 1.4E-10 4.7E-15 89.0 3.4 49 390-441 7-59 (97)
189 4a1s_A PINS, partner of inscut 99.0 4.4E-08 1.5E-12 95.0 22.2 258 21-282 46-371 (411)
190 1xnf_A Lipoprotein NLPI; TPR, 99.0 2.9E-08 9.9E-13 90.4 19.4 205 3-240 61-269 (275)
191 1l3k_A Heterogeneous nuclear r 99.0 6.1E-10 2.1E-14 97.2 7.5 52 390-441 103-154 (196)
192 3md3_A Nuclear and cytoplasmic 99.0 8.8E-10 3E-14 93.2 8.3 53 389-441 85-137 (166)
193 1fjc_A Nucleolin RBD2, protein 99.0 1.9E-10 6.5E-15 88.0 3.6 48 389-441 14-61 (96)
194 2dnq_A RNA-binding protein 4B; 99.0 9.2E-10 3.1E-14 83.1 6.9 45 389-441 6-50 (90)
195 2i2y_A Fusion protein consists 99.0 6.3E-10 2.2E-14 92.8 6.5 48 389-441 71-118 (150)
196 3nf1_A KLC 1, kinesin light ch 99.0 1.3E-07 4.4E-12 87.5 23.1 213 19-245 23-306 (311)
197 2jvr_A Nucleolar protein 3; RN 99.0 3.9E-10 1.3E-14 88.3 4.8 48 390-441 27-75 (111)
198 3sf4_A G-protein-signaling mod 99.0 1.2E-07 4.2E-12 91.3 23.5 123 157-281 203-334 (406)
199 1why_A Hypothetical protein ri 99.0 1.6E-09 5.6E-14 82.9 8.1 46 390-441 16-61 (97)
200 2g4b_A Splicing factor U2AF 65 99.0 1.1E-09 3.7E-14 93.4 7.7 51 391-441 94-144 (172)
201 4a1s_A PINS, partner of inscut 99.0 3.8E-07 1.3E-11 88.3 26.8 210 71-282 61-331 (411)
202 2hvz_A Splicing factor, argini 99.0 5.5E-10 1.9E-14 86.3 5.0 45 392-441 1-45 (101)
203 2qfj_A FBP-interacting repress 98.9 8.5E-10 2.9E-14 97.8 6.8 51 391-441 28-78 (216)
204 2yh0_A Splicing factor U2AF 65 98.9 2.9E-09 1E-13 92.9 9.8 53 389-441 112-164 (198)
205 1wf1_A RNA-binding protein RAL 98.9 2.8E-09 9.5E-14 83.7 8.5 45 389-441 25-70 (110)
206 1whx_A Hypothetical protein ri 98.9 5.7E-10 2E-14 87.8 4.5 46 390-441 9-54 (111)
207 2cjk_A Nuclear polyadenylated 98.9 6.4E-10 2.2E-14 94.3 5.0 51 391-441 87-137 (167)
208 2e5g_A U6 snRNA-specific termi 98.9 2.5E-09 8.7E-14 81.3 7.8 47 390-441 7-53 (94)
209 1x4g_A Nucleolysin TIAR; struc 98.9 1.1E-09 3.8E-14 85.9 5.9 46 390-441 24-69 (109)
210 2kvi_A Nuclear polyadenylated 98.9 1.7E-09 5.7E-14 82.7 6.2 45 389-441 8-53 (96)
211 2dgt_A RNA-binding protein 30; 98.9 2.4E-09 8.3E-14 81.1 7.0 45 389-441 8-52 (92)
212 3egn_A RNA-binding protein 40; 98.9 2.4E-10 8.1E-15 94.5 1.4 53 389-441 43-100 (143)
213 4i17_A Hypothetical protein; T 98.9 4.1E-07 1.4E-11 80.6 22.9 190 3-227 25-224 (228)
214 3beg_B Splicing factor, argini 98.9 7.4E-10 2.5E-14 87.8 4.2 46 389-441 14-59 (115)
215 1b7f_A Protein (SXL-lethal pro 98.9 2.8E-09 9.5E-14 90.4 8.1 52 390-441 88-139 (168)
216 3ro2_A PINS homolog, G-protein 98.9 1.1E-06 3.6E-11 81.8 26.7 253 23-280 5-289 (338)
217 4g1t_A Interferon-induced prot 98.9 1.8E-07 6.2E-12 92.5 22.2 191 34-246 149-363 (472)
218 2dnp_A RNA-binding protein 14; 98.9 2.1E-09 7E-14 81.1 5.9 45 389-441 7-51 (90)
219 2cq2_A Hypothetical protein LO 98.9 1.4E-09 4.9E-14 84.9 5.0 45 391-441 25-71 (114)
220 1fxl_A Paraneoplastic encephal 98.9 2.5E-09 8.6E-14 90.5 6.9 52 390-441 87-138 (167)
221 3nmr_A Cugbp ELAV-like family 98.9 1.9E-09 6.4E-14 92.1 6.0 51 390-441 94-144 (175)
222 2qfj_A FBP-interacting repress 98.9 2.9E-09 9.9E-14 94.3 7.2 51 391-441 125-175 (216)
223 2cpd_A Apobec-1 stimulating pr 98.9 6.4E-09 2.2E-13 79.9 8.0 45 389-441 13-59 (99)
224 3sf4_A G-protein-signaling mod 98.9 1E-06 3.5E-11 84.7 25.5 255 22-280 8-293 (406)
225 1wg1_A KIAA1579 protein, homol 98.9 2.2E-09 7.6E-14 80.6 5.0 46 389-441 3-48 (88)
226 2dgu_A Heterogeneous nuclear r 98.9 3.4E-09 1.2E-13 82.1 6.2 44 390-441 10-53 (103)
227 2hzc_A Splicing factor U2AF 65 98.8 2.6E-09 8.9E-14 79.9 5.0 47 389-441 4-61 (87)
228 2r5s_A Uncharacterized protein 98.8 1.8E-08 6.3E-13 85.9 11.0 165 24-246 7-173 (176)
229 3qky_A Outer membrane assembly 98.8 1.1E-06 3.9E-11 79.6 23.8 186 21-246 13-224 (261)
230 1ouv_A Conserved hypothetical 98.8 2.5E-06 8.4E-11 77.8 25.6 198 20-245 3-214 (273)
231 3dra_A Protein farnesyltransfe 98.8 4.6E-07 1.6E-11 84.4 20.6 104 22-125 31-142 (306)
232 1sjr_A Polypyrimidine tract-bi 98.8 4.7E-09 1.6E-13 87.2 6.2 48 390-441 45-92 (164)
233 1x5p_A Negative elongation fac 98.8 1.1E-08 3.7E-13 78.3 7.7 45 389-441 13-57 (97)
234 2e44_A Insulin-like growth fac 98.8 3.9E-09 1.3E-13 80.6 5.1 48 390-441 14-62 (96)
235 2cqh_A IGF-II mRNA-binding pro 98.8 2.6E-09 8.9E-14 81.1 3.7 45 390-441 7-52 (93)
236 3edt_B KLC 2, kinesin light ch 98.8 7.1E-07 2.4E-11 81.0 20.9 162 34-212 12-198 (283)
237 3sde_A Paraspeckle component 1 98.8 7.9E-09 2.7E-13 94.5 6.6 50 391-441 96-145 (261)
238 3urz_A Uncharacterized protein 98.8 1.1E-06 3.7E-11 77.1 20.0 171 23-216 4-190 (208)
239 3zzy_A Polypyrimidine tract-bi 98.8 1.2E-08 4E-13 81.6 6.4 47 390-441 27-74 (130)
240 3smz_A Protein raver-1, ribonu 98.7 1.2E-08 4.3E-13 94.4 7.1 51 391-441 95-145 (284)
241 3qou_A Protein YBBN; thioredox 98.7 2.7E-07 9.4E-12 85.4 16.2 168 54-245 114-283 (287)
242 3pgw_A U1-A; protein-RNA compl 98.7 1.4E-08 4.7E-13 94.0 7.3 50 389-441 7-60 (282)
243 2e5i_A Heterogeneous nuclear r 98.7 3.1E-08 1.1E-12 78.8 8.3 45 391-441 25-70 (124)
244 4f02_A Polyadenylate-binding p 98.7 1E-08 3.4E-13 90.8 5.7 48 392-441 104-151 (213)
245 2pzi_A Probable serine/threoni 98.7 8.9E-08 3E-12 99.9 13.7 174 34-232 402-583 (681)
246 3as5_A MAMA; tetratricopeptide 98.7 8.3E-07 2.9E-11 75.0 17.4 151 4-216 27-177 (186)
247 4gyw_A UDP-N-acetylglucosamine 98.7 8.8E-07 3E-11 92.5 20.9 169 52-281 4-172 (723)
248 2ghp_A U4/U6 snRNA-associated 98.7 1.1E-08 3.7E-13 95.3 5.8 53 387-441 37-89 (292)
249 3mkr_A Coatomer subunit epsilo 98.7 3E-06 1E-10 78.5 21.8 187 4-220 84-272 (291)
250 2bz2_A Negative elongation fac 98.7 2.3E-08 7.9E-13 79.7 6.2 45 389-441 37-81 (121)
251 1ouv_A Conserved hypothetical 98.7 1.4E-05 4.9E-10 72.6 26.0 210 3-246 24-251 (273)
252 2adc_A Polypyrimidine tract-bi 98.7 1.6E-08 5.3E-13 90.6 5.3 48 389-441 32-80 (229)
253 3sde_A Paraspeckle component 1 98.7 2.5E-08 8.6E-13 91.1 6.6 48 388-441 19-66 (261)
254 4ga2_A E3 SUMO-protein ligase 98.6 3.7E-07 1.3E-11 75.6 12.9 126 2-128 7-135 (150)
255 3tyt_A Heterogeneous nuclear r 98.6 1.5E-08 5.2E-13 88.9 4.5 49 391-441 123-173 (205)
256 4gco_A Protein STI-1; structur 98.6 1.2E-06 4E-11 70.3 15.4 109 18-128 8-116 (126)
257 2vsy_A XCC0866; transferase, g 98.6 7E-07 2.4E-11 90.9 17.6 164 37-224 3-169 (568)
258 3dra_A Protein farnesyltransfe 98.6 3.2E-06 1.1E-10 78.6 20.5 220 4-245 52-286 (306)
259 3u1l_A PRE-mRNA-splicing facto 98.6 2.1E-08 7.1E-13 89.2 5.2 48 388-441 131-187 (240)
260 1fje_B Nucleolin RBD12, protei 98.6 3.8E-09 1.3E-13 90.3 0.3 52 389-441 11-62 (175)
261 2ghp_A U4/U6 snRNA-associated 98.6 2.8E-08 9.7E-13 92.4 5.8 53 389-441 208-262 (292)
262 2diu_A KIAA0430 protein; struc 98.6 5.8E-08 2E-12 72.0 6.0 39 393-441 11-54 (96)
263 2pe8_A Splicing factor 45; RRM 98.6 8E-08 2.7E-12 74.3 7.0 51 391-441 8-64 (105)
264 1fje_B Nucleolin RBD12, protei 98.6 5.2E-08 1.8E-12 83.1 6.6 48 389-441 97-144 (175)
265 3smz_A Protein raver-1, ribonu 98.6 5.3E-08 1.8E-12 90.1 6.8 51 390-441 183-234 (284)
266 2vgx_A Chaperone SYCD; alterna 98.6 8.7E-07 3E-11 73.2 13.1 116 3-124 5-120 (148)
267 2yhc_A BAMD, UPF0169 lipoprote 98.6 2E-05 6.8E-10 69.7 22.7 183 24-246 5-213 (225)
268 3gyz_A Chaperone protein IPGC; 98.6 1.1E-06 3.7E-11 73.0 13.4 106 18-125 31-136 (151)
269 2c2l_A CHIP, carboxy terminus 98.5 6.7E-07 2.3E-11 82.5 12.7 194 22-245 3-198 (281)
270 3dss_A Geranylgeranyl transfer 98.5 3.8E-05 1.3E-09 71.9 24.2 198 26-245 32-266 (331)
271 3dss_A Geranylgeranyl transfer 98.5 5.7E-05 1.9E-09 70.8 25.1 246 4-268 49-320 (331)
272 2xcb_A PCRH, regulatory protei 98.5 2.1E-06 7.2E-11 70.1 13.6 113 7-125 6-118 (142)
273 3nf1_A KLC 1, kinesin light ch 98.5 4.1E-05 1.4E-09 70.3 23.9 180 52-245 22-223 (311)
274 3qky_A Outer membrane assembly 98.5 9.7E-06 3.3E-10 73.3 19.0 95 3-98 33-137 (261)
275 2e2e_A Formate-dependent nitri 98.5 2.8E-06 9.5E-11 72.0 14.3 118 3-125 28-147 (177)
276 2fo7_A Synthetic consensus TPR 98.5 1.3E-05 4.3E-10 63.4 17.0 92 26-119 4-95 (136)
277 4ga2_A E3 SUMO-protein ligase 98.5 2.2E-06 7.6E-11 70.8 12.8 98 3-104 49-146 (150)
278 3pgw_A U1-A; protein-RNA compl 98.5 3.2E-07 1.1E-11 84.7 8.3 48 389-441 205-252 (282)
279 2vsy_A XCC0866; transferase, g 98.5 3.8E-06 1.3E-10 85.5 16.9 122 3-130 7-128 (568)
280 3q7a_A Farnesyltransferase alp 98.5 4.3E-05 1.5E-09 72.0 22.6 195 22-231 52-256 (349)
281 2r5s_A Uncharacterized protein 98.4 2.9E-06 9.9E-11 72.0 13.4 117 3-125 24-140 (176)
282 2d9o_A DNAJ (HSP40) homolog, s 98.4 7.4E-07 2.5E-11 68.0 8.1 36 401-441 27-62 (100)
283 3tht_A Alkylated DNA repair pr 98.4 1.9E-07 6.6E-12 87.5 5.6 45 391-441 18-64 (345)
284 2pzi_A Probable serine/threoni 98.4 3.4E-06 1.2E-10 87.9 15.5 165 53-245 390-562 (681)
285 2e2e_A Formate-dependent nitri 98.4 4.5E-06 1.5E-10 70.7 13.2 145 36-244 23-169 (177)
286 1qm9_A Polypyrimidine tract-bi 98.4 9.9E-07 3.4E-11 76.7 8.4 47 390-441 119-166 (198)
287 3edt_B KLC 2, kinesin light ch 98.4 7.9E-05 2.7E-09 67.2 21.6 159 72-246 15-198 (283)
288 1p5q_A FKBP52, FK506-binding p 98.3 1.9E-06 6.4E-11 81.7 10.2 84 184-271 198-281 (336)
289 3upv_A Heat shock protein STI1 98.3 2.3E-05 7.9E-10 62.1 15.1 100 22-123 3-102 (126)
290 2fo7_A Synthetic consensus TPR 98.3 1.9E-05 6.6E-10 62.3 14.7 116 3-124 19-134 (136)
291 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 4.2E-10 67.1 13.7 104 20-125 8-111 (164)
292 3urz_A Uncharacterized protein 98.3 3.4E-05 1.2E-09 67.3 17.0 115 3-122 22-153 (208)
293 2adc_A Polypyrimidine tract-bi 98.3 1.6E-06 5.5E-11 77.4 8.2 47 390-441 150-197 (229)
294 1elw_A TPR1-domain of HOP; HOP 98.3 3.8E-05 1.3E-09 59.2 15.1 103 22-126 3-105 (118)
295 3ulq_A Response regulator aspa 98.3 0.00023 7.9E-09 68.1 23.7 224 3-246 121-368 (383)
296 2lni_A Stress-induced-phosphop 98.3 3.2E-05 1.1E-09 61.2 14.9 105 20-126 13-117 (133)
297 1hz4_A MALT regulatory protein 98.3 0.00027 9.4E-09 67.2 24.0 229 3-246 32-282 (373)
298 3esl_A Checkpoint serine/threo 98.3 2.7E-05 9.3E-10 66.3 14.7 117 2-123 9-145 (202)
299 4f3v_A ESX-1 secretion system 98.3 4.7E-05 1.6E-09 69.4 17.4 187 35-246 18-237 (282)
300 2dit_A HIV TAT specific factor 98.3 2.1E-06 7.1E-11 67.3 7.4 48 390-441 14-72 (112)
301 2wvi_A Mitotic checkpoint seri 98.3 4.6E-05 1.6E-09 62.9 15.7 110 4-123 2-126 (164)
302 1qqe_A Vesicular transport pro 98.3 9.5E-05 3.2E-09 68.2 19.9 213 38-280 32-263 (292)
303 1jmt_A Splicing factor U2AF 35 98.2 1.5E-07 5.1E-12 72.7 0.4 45 396-441 20-76 (104)
304 2vyi_A SGTA protein; chaperone 98.2 5.2E-05 1.8E-09 59.6 15.5 105 20-126 9-113 (131)
305 3q7a_A Farnesyltransferase alp 98.2 4.4E-05 1.5E-09 71.9 17.2 222 4-245 73-330 (349)
306 3ulq_A Response regulator aspa 98.2 0.0004 1.4E-08 66.4 24.6 201 29-243 109-332 (383)
307 4gco_A Protein STI-1; structur 98.2 1.5E-05 5E-10 63.8 11.9 93 3-100 31-123 (126)
308 4a1g_A Mitotic checkpoint seri 98.2 3.6E-05 1.2E-09 62.6 13.8 110 3-123 8-131 (152)
309 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.0001 3.5E-09 65.0 17.8 177 3-217 22-218 (225)
310 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4E-10 61.6 10.2 103 21-125 4-109 (112)
311 2vgx_A Chaperone SYCD; alterna 98.2 1.1E-05 3.9E-10 66.4 10.6 77 44-122 8-84 (148)
312 3v4m_A Splicing factor U2AF 65 98.2 1.9E-06 6.6E-11 66.5 5.4 51 391-441 5-67 (105)
313 1a17_A Serine/threonine protei 98.2 0.00029 1E-08 58.0 19.4 104 22-127 12-115 (166)
314 3q49_B STIP1 homology and U bo 98.2 2.7E-05 9.2E-10 62.4 12.5 102 22-125 8-109 (137)
315 1hxi_A PEX5, peroxisome target 98.2 2.3E-05 7.7E-10 62.1 11.7 99 25-125 19-117 (121)
316 2xcb_A PCRH, regulatory protei 98.2 1.7E-05 5.9E-10 64.5 11.0 77 44-122 5-81 (142)
317 3qou_A Protein YBBN; thioredox 98.1 0.00014 4.7E-09 67.0 18.3 168 86-277 111-278 (287)
318 3u64_A Protein TP_0956; tetrat 98.1 0.00065 2.2E-08 61.5 21.9 184 43-246 52-269 (301)
319 1na0_A Designed protein CTPR3; 98.1 0.00013 4.4E-09 56.7 15.7 103 23-127 9-111 (125)
320 1owx_A Lupus LA protein, SS-B, 98.1 2.6E-06 8.9E-11 66.8 5.5 47 389-441 16-63 (121)
321 1p5q_A FKBP52, FK506-binding p 98.1 2.3E-05 7.8E-10 74.1 13.0 151 38-246 128-294 (336)
322 3u3w_A Transcriptional activat 98.1 0.001 3.5E-08 61.1 23.9 162 73-245 90-265 (293)
323 1dce_A Protein (RAB geranylger 98.1 0.00015 5.3E-09 73.5 19.3 176 34-232 39-241 (567)
324 3gyz_A Chaperone protein IPGC; 98.1 9.3E-05 3.2E-09 61.1 14.2 108 169-280 23-130 (151)
325 3esl_A Checkpoint serine/threo 98.1 0.00024 8.1E-09 60.5 16.5 102 162-267 58-163 (202)
326 2xm6_A Protein corresponding t 98.1 0.01 3.4E-07 58.7 31.6 46 198-245 274-324 (490)
327 2qfc_A PLCR protein; TPR, HTH, 98.1 0.0013 4.4E-08 60.4 23.3 162 73-245 90-265 (293)
328 2xm6_A Protein corresponding t 98.0 0.0097 3.3E-07 58.8 30.6 111 3-123 97-217 (490)
329 1a17_A Serine/threonine protei 98.0 0.00011 3.7E-09 60.7 13.8 111 3-118 31-142 (166)
330 3ue2_A Poly(U)-binding-splicin 98.0 4.1E-06 1.4E-10 66.0 4.4 51 391-441 20-79 (118)
331 1qqe_A Vesicular transport pro 98.0 0.0016 5.4E-08 59.8 22.8 208 41-281 3-226 (292)
332 2dba_A Smooth muscle cell asso 98.0 0.00013 4.4E-09 58.9 13.4 104 20-125 25-131 (148)
333 4aez_C MAD3, mitotic spindle c 98.0 0.00011 3.8E-09 63.6 13.0 112 3-123 53-180 (223)
334 1elw_A TPR1-domain of HOP; HOP 98.0 0.0001 3.6E-09 56.6 12.0 93 3-100 22-114 (118)
335 3upv_A Heat shock protein STI1 98.0 9.7E-05 3.3E-09 58.4 11.9 93 3-100 22-120 (126)
336 3q15_A PSP28, response regulat 98.0 0.0014 4.7E-08 62.6 22.3 235 29-282 107-364 (378)
337 1elr_A TPR2A-domain of HOP; HO 97.9 0.00019 6.3E-09 56.3 13.3 102 22-125 3-111 (131)
338 1hxi_A PEX5, peroxisome target 97.9 5.1E-05 1.7E-09 60.0 9.5 85 3-92 35-119 (121)
339 2lni_A Stress-induced-phosphop 97.9 0.00013 4.3E-09 57.7 12.0 96 3-103 34-129 (133)
340 2vyi_A SGTA protein; chaperone 97.9 0.0002 6.7E-09 56.1 13.0 96 3-103 30-125 (131)
341 4a1g_A Mitotic checkpoint seri 97.9 0.00035 1.2E-08 56.9 13.8 83 175-266 64-148 (152)
342 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00013 4.4E-09 60.8 11.7 81 165-246 28-108 (164)
343 3q15_A PSP28, response regulat 97.9 0.0028 9.6E-08 60.4 22.7 223 3-245 119-364 (378)
344 2dba_A Smooth muscle cell asso 97.9 0.00018 6.1E-09 58.1 12.3 97 3-101 46-142 (148)
345 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0019 6.5E-08 55.7 18.8 147 25-216 8-154 (213)
346 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0044 1.5E-07 57.3 22.3 180 36-244 29-222 (307)
347 1na0_A Designed protein CTPR3; 97.8 0.0004 1.4E-08 53.7 13.0 93 3-100 27-119 (125)
348 1zu2_A Mitochondrial import re 97.8 0.00011 3.9E-09 60.5 9.8 89 38-126 17-124 (158)
349 1hz4_A MALT regulatory protein 97.8 0.015 5.2E-07 54.8 26.6 235 29-280 20-279 (373)
350 4f3v_A ESX-1 secretion system 97.8 8.5E-05 2.9E-09 67.7 9.8 197 3-227 24-251 (282)
351 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.00039 1.3E-08 60.1 13.9 102 22-125 36-153 (213)
352 3k9i_A BH0479 protein; putativ 97.8 9.3E-05 3.2E-09 57.8 8.8 89 4-94 9-97 (117)
353 4gcn_A Protein STI-1; structur 97.8 0.00031 1.1E-08 55.9 11.7 101 22-124 7-114 (127)
354 2kat_A Uncharacterized protein 97.8 0.00036 1.2E-08 54.0 11.7 81 4-89 4-84 (115)
355 3k9i_A BH0479 protein; putativ 97.7 0.00014 4.7E-09 56.8 9.1 82 164-246 6-90 (117)
356 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 5.8E-05 2E-09 74.6 8.3 83 184-270 319-401 (457)
357 2fbn_A 70 kDa peptidylprolyl i 97.7 0.0011 3.7E-08 56.9 15.5 103 22-126 37-155 (198)
358 3q49_B STIP1 homology and U bo 97.7 0.00025 8.7E-09 56.5 10.6 93 3-100 27-124 (137)
359 2c2l_A CHIP, carboxy terminus 97.7 0.0008 2.7E-08 61.6 15.2 171 3-212 22-199 (281)
360 2ifu_A Gamma-SNAP; membrane fu 97.7 0.0018 6.2E-08 59.9 17.8 207 36-280 4-221 (307)
361 4aez_C MAD3, mitotic spindle c 97.7 0.00033 1.1E-08 60.6 11.5 95 162-265 98-196 (223)
362 3rkv_A Putative peptidylprolyl 97.7 0.0012 4.1E-08 54.5 14.7 104 22-127 10-131 (162)
363 2kat_A Uncharacterized protein 97.7 0.0003 1E-08 54.5 10.0 75 170-245 7-81 (115)
364 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00032 1.1E-08 69.2 12.5 105 21-127 266-385 (457)
365 3rkv_A Putative peptidylprolyl 97.7 0.00046 1.6E-08 57.1 11.5 89 156-245 26-125 (162)
366 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00019 6.5E-09 67.8 10.1 149 22-245 178-327 (338)
367 2kck_A TPR repeat; tetratricop 97.6 0.00026 9E-09 53.8 9.1 66 179-245 37-105 (112)
368 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00012 4.2E-09 69.1 8.5 117 3-124 197-330 (338)
369 3rjv_A Putative SEL1 repeat pr 97.6 0.014 4.9E-07 50.5 21.4 61 183-245 126-196 (212)
370 2xev_A YBGF; tetratricopeptide 97.6 0.0012 4.1E-08 51.8 13.1 97 27-125 6-108 (129)
371 3mv2_B Coatomer subunit epsilo 97.6 0.021 7.1E-07 52.6 22.8 201 23-253 71-287 (310)
372 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00041 1.4E-08 59.6 10.8 99 3-103 56-167 (198)
373 3e4b_A ALGK; tetratricopeptide 97.6 0.036 1.2E-06 54.3 26.1 96 25-123 178-281 (452)
374 1zu2_A Mitochondrial import re 97.6 0.00053 1.8E-08 56.5 10.5 86 3-92 20-125 (158)
375 2xev_A YBGF; tetratricopeptide 97.6 0.00095 3.3E-08 52.4 11.7 63 183-246 40-105 (129)
376 1na3_A Designed protein CTPR2; 97.5 0.0014 4.6E-08 47.8 11.6 80 22-102 8-87 (91)
377 2hr2_A Hypothetical protein; a 97.5 0.00091 3.1E-08 55.2 11.4 102 22-125 10-134 (159)
378 3e4b_A ALGK; tetratricopeptide 97.5 0.0019 6.4E-08 63.6 15.8 80 163-245 194-279 (452)
379 4gcn_A Protein STI-1; structur 97.5 0.00091 3.1E-08 53.1 11.2 81 164-245 24-111 (127)
380 1dce_A Protein (RAB geranylger 97.5 0.0036 1.2E-07 63.4 17.5 177 4-196 48-240 (567)
381 1ihg_A Cyclophilin 40; ppiase 97.4 0.00044 1.5E-08 66.1 9.2 100 3-103 241-352 (370)
382 1elr_A TPR2A-domain of HOP; HO 97.4 0.00099 3.4E-08 52.0 9.8 80 165-245 21-107 (131)
383 3ma5_A Tetratricopeptide repea 97.4 0.00071 2.4E-08 51.1 8.2 66 179-245 4-69 (100)
384 2l6j_A TPR repeat-containing p 97.4 0.0025 8.4E-08 48.3 11.3 69 22-91 3-71 (111)
385 3ma5_A Tetratricopeptide repea 97.3 0.00034 1.2E-08 52.9 5.9 69 20-89 4-72 (100)
386 1wao_1 Serine/threonine protei 97.3 0.0005 1.7E-08 68.2 8.2 91 4-99 25-115 (477)
387 2wvi_A Mitotic checkpoint seri 97.3 0.0028 9.6E-08 52.2 11.1 97 162-267 44-144 (164)
388 3ly7_A Transcriptional activat 97.3 0.0087 3E-07 56.4 15.8 93 179-278 274-366 (372)
389 3gw4_A Uncharacterized protein 97.2 0.047 1.6E-06 46.0 19.3 90 156-246 81-176 (203)
390 3u64_A Protein TP_0956; tetrat 97.2 0.0049 1.7E-07 55.8 12.8 116 7-125 139-272 (301)
391 3s6e_A RNA-binding protein 39; 97.2 0.00026 8.9E-09 55.2 3.9 46 392-441 8-63 (114)
392 1na3_A Designed protein CTPR2; 97.2 0.007 2.4E-07 43.8 11.5 65 181-246 8-72 (91)
393 1xi4_A Clathrin heavy chain; a 97.1 0.11 3.6E-06 57.2 24.5 76 36-123 1089-1164(1630)
394 1ihg_A Cyclophilin 40; ppiase 97.1 0.0044 1.5E-07 59.2 12.9 102 23-126 223-340 (370)
395 2hr2_A Hypothetical protein; a 97.1 0.0042 1.4E-07 51.2 10.1 90 155-245 25-130 (159)
396 3gw4_A Uncharacterized protein 97.0 0.046 1.6E-06 46.1 17.1 125 155-281 40-174 (203)
397 3ro3_A PINS homolog, G-protein 97.0 0.085 2.9E-06 42.1 18.0 88 156-245 64-157 (164)
398 4g26_A Pentatricopeptide repea 97.0 0.077 2.6E-06 52.7 20.7 98 25-123 28-135 (501)
399 1wao_1 Serine/threonine protei 96.9 0.0016 5.6E-08 64.5 8.0 91 33-125 16-106 (477)
400 1xi4_A Clathrin heavy chain; a 96.9 0.15 5.1E-06 56.1 23.2 106 159-268 1291-1415(1630)
401 2l6j_A TPR repeat-containing p 96.9 0.014 4.9E-07 43.9 11.7 63 183-246 5-67 (111)
402 3ro3_A PINS homolog, G-protein 96.9 0.028 9.7E-07 45.0 14.1 89 156-246 24-118 (164)
403 3rjv_A Putative SEL1 repeat pr 96.9 0.093 3.2E-06 45.2 18.1 81 197-280 103-191 (212)
404 2qfc_A PLCR protein; TPR, HTH, 96.8 0.1 3.4E-06 47.5 18.7 163 106-280 88-263 (293)
405 4b4t_Q 26S proteasome regulato 96.8 0.056 1.9E-06 51.9 17.7 200 34-246 15-245 (434)
406 4b4t_Q 26S proteasome regulato 96.7 0.15 5E-06 48.9 20.2 163 72-246 18-204 (434)
407 2kc7_A BFR218_protein; tetratr 96.7 0.014 4.8E-07 43.2 10.0 63 33-96 10-73 (99)
408 1b89_A Protein (clathrin heavy 96.6 0.079 2.7E-06 51.2 16.6 81 162-242 221-307 (449)
409 3u3w_A Transcriptional activat 96.6 0.1 3.5E-06 47.4 16.9 129 106-246 88-225 (293)
410 3bee_A Putative YFRE protein; 96.6 0.021 7.1E-07 42.4 9.9 67 180-246 4-72 (93)
411 2kc7_A BFR218_protein; tetratr 96.4 0.053 1.8E-06 39.9 11.6 63 189-254 7-70 (99)
412 3mv2_B Coatomer subunit epsilo 96.4 0.21 7.3E-06 45.9 17.5 190 5-218 86-288 (310)
413 3dxb_A Thioredoxin N-terminall 96.4 0.0029 9.9E-08 55.7 4.8 38 404-441 142-183 (222)
414 3bee_A Putative YFRE protein; 96.3 0.015 5.1E-07 43.2 7.8 68 54-122 3-72 (93)
415 4g26_A Pentatricopeptide repea 96.2 0.53 1.8E-05 46.6 20.6 97 180-279 103-200 (501)
416 2dnr_A Synaptojanin-1; RRM dom 96.2 0.0066 2.2E-07 44.4 4.8 41 393-441 9-57 (91)
417 3n71_A Histone lysine methyltr 96.2 0.13 4.6E-06 50.7 15.9 89 157-246 325-422 (490)
418 3qww_A SET and MYND domain-con 95.6 0.11 3.7E-06 50.5 12.4 89 156-245 313-410 (433)
419 3n71_A Histone lysine methyltr 95.2 0.66 2.3E-05 45.7 16.5 127 105-246 321-464 (490)
420 3ly7_A Transcriptional activat 95.0 2 6.8E-05 40.3 18.1 156 46-224 183-352 (372)
421 1ufw_A Synaptojanin 2; RNP dom 94.8 0.02 6.9E-07 42.1 3.2 41 393-441 17-66 (95)
422 1whv_A Poly(A)-specific ribonu 94.1 0.098 3.4E-06 38.5 5.5 41 393-441 17-57 (100)
423 1klx_A Cysteine rich protein B 93.8 1.2 4E-05 35.2 12.3 107 163-280 10-120 (138)
424 3qwp_A SET and MYND domain-con 93.8 0.37 1.3E-05 46.7 10.8 86 159-245 305-399 (429)
425 3ctr_A Poly(A)-specific ribonu 93.2 0.19 6.4E-06 37.1 5.7 41 393-441 7-47 (101)
426 2l9w_A U4/U6 snRNA-associated- 92.5 0.24 8.3E-06 37.3 5.6 47 389-441 19-70 (117)
427 1pc2_A Mitochondria fission pr 92.5 2.2 7.5E-05 34.5 11.8 90 156-254 13-106 (152)
428 2v5f_A Prolyl 4-hydroxylase su 91.8 1.4 4.8E-05 32.8 9.5 69 157-226 21-89 (104)
429 2v5f_A Prolyl 4-hydroxylase su 91.7 3.1 0.00011 30.8 11.5 64 187-253 10-80 (104)
430 1b89_A Protein (clathrin heavy 90.9 12 0.0004 36.1 20.9 47 182-229 282-340 (449)
431 3qww_A SET and MYND domain-con 90.6 1.4 4.9E-05 42.5 10.5 91 195-287 311-412 (433)
432 1uw4_A UPF3X; nonsense mediate 90.4 0.82 2.8E-05 33.4 6.5 50 392-441 2-53 (91)
433 1pc2_A Mitochondria fission pr 88.9 2.2 7.6E-05 34.5 8.6 87 39-126 14-104 (152)
434 2dhx_A Poly (ADP-ribose) polym 88.3 1.9 6.6E-05 32.0 7.1 44 390-441 7-55 (104)
435 3pq1_A Poly(A) RNA polymerase; 86.4 0.44 1.5E-05 46.2 3.6 45 391-441 53-97 (464)
436 3qwp_A SET and MYND domain-con 85.7 4.3 0.00015 39.1 10.3 92 194-287 299-401 (429)
437 2ff4_A Probable regulatory pro 81.3 16 0.00053 34.5 12.1 57 29-86 177-233 (388)
438 1klx_A Cysteine rich protein B 79.3 20 0.00068 27.8 13.8 111 3-125 13-129 (138)
439 4gns_B Protein CSD3, chitin bi 77.9 64 0.0022 33.3 16.0 61 182-243 337-397 (754)
440 1nzn_A CGI-135 protein, fissio 72.5 19 0.00064 27.9 8.0 53 164-217 54-108 (126)
441 2l08_A Regulator of nonsense t 65.9 6.4 0.00022 28.9 3.8 51 391-441 9-61 (97)
442 3o48_A Mitochondria fission 1 64.3 31 0.0011 26.9 7.7 69 184-254 44-113 (134)
443 3o48_A Mitochondria fission 1 62.3 24 0.00082 27.6 6.7 55 163-218 58-113 (134)
444 4f25_A Polyadenylate-binding p 59.2 2.6 8.8E-05 32.1 0.7 18 390-407 96-113 (115)
445 1y8m_A FIS1; mitochondria, unk 57.8 28 0.00096 27.5 6.5 47 199-245 58-105 (144)
446 1nzn_A CGI-135 protein, fissio 55.0 70 0.0024 24.6 10.7 55 198-254 53-109 (126)
447 4b4t_R RPN7, 26S proteasome re 54.4 31 0.0011 32.9 7.7 62 184-246 133-197 (429)
448 2ff4_A Probable regulatory pro 52.0 53 0.0018 30.8 8.8 59 186-245 175-233 (388)
449 2yh0_A Splicing factor U2AF 65 51.0 9.6 0.00033 31.6 3.1 19 417-441 41-59 (198)
450 1y8m_A FIS1; mitochondria, unk 47.3 74 0.0025 25.1 7.4 56 162-218 56-112 (144)
451 3spa_A Mtrpol, DNA-directed RN 45.1 2.2E+02 0.0077 30.6 12.6 83 184-269 129-215 (1134)
452 4b4t_P 26S proteasome regulato 44.4 1.3E+02 0.0044 28.7 10.3 64 182-246 137-206 (445)
453 2g4b_A Splicing factor U2AF 65 43.0 23 0.00077 28.4 4.1 19 417-441 41-59 (172)
454 3d45_A Poly(A)-specific ribonu 42.3 39 0.0013 33.1 6.3 41 392-441 441-481 (507)
455 3ffl_A Anaphase-promoting comp 39.7 1.1E+02 0.0036 24.9 7.3 60 185-245 23-91 (167)
456 3spa_A Mtrpol, DNA-directed RN 38.4 3.9E+02 0.014 28.8 13.2 99 25-124 129-232 (1134)
457 1wwh_A Nucleoporin 35, nucleop 35.9 67 0.0023 24.5 5.3 46 389-441 22-67 (119)
458 2w2u_A Hypothetical P60 katani 35.7 1.1E+02 0.0039 21.4 8.0 16 230-245 32-47 (83)
459 1zbp_A Hypothetical protein VP 35.4 1.6E+02 0.0055 26.0 8.4 62 165-227 14-78 (273)
460 3iqu_A 14-3-3 protein sigma; s 32.5 2.4E+02 0.0083 24.3 11.5 54 157-210 149-203 (236)
461 2br9_A 14-3-3E, 14-3-3 protein 32.1 2.4E+02 0.0084 24.2 11.4 54 158-211 147-201 (234)
462 2v6y_A AAA family ATPase, P60 31.8 1.3E+02 0.0045 21.0 7.6 17 229-245 23-39 (83)
463 1o9d_A 14-3-3-like protein C; 31.3 2.7E+02 0.0091 24.4 11.8 52 159-210 153-205 (260)
464 2o8p_A 14-3-3 domain containin 31.1 1.7E+02 0.0057 25.1 7.6 52 35-86 137-196 (227)
465 4gns_B Protein CSD3, chitin bi 30.7 3.6E+02 0.012 27.7 11.4 129 62-208 253-396 (754)
466 3mkq_B Coatomer subunit alpha; 30.5 1.2E+02 0.0039 25.0 6.3 24 184-208 36-59 (177)
467 3uzd_A 14-3-3 protein gamma; s 29.2 2.8E+02 0.0097 24.0 10.9 53 158-210 148-201 (248)
468 3ubw_A 14-3-3E, 14-3-3 protein 28.3 3E+02 0.01 24.0 11.4 53 158-210 173-226 (261)
469 1zbp_A Hypothetical protein VP 28.1 1.7E+02 0.0058 25.9 7.3 50 195-245 10-59 (273)
470 4b4t_R RPN7, 26S proteasome re 26.3 96 0.0033 29.4 6.0 64 218-281 132-195 (429)
471 2npm_A 14-3-3 domain containin 26.1 3.3E+02 0.011 23.8 10.9 53 158-211 173-226 (260)
472 1wey_A Calcipressin 1; structu 25.9 60 0.0021 24.0 3.4 35 391-425 5-44 (104)
473 1g1e_B SIN3A; four-helix bundl 23.6 1.4E+02 0.0047 21.3 4.9 23 203-225 62-84 (89)
474 1ya0_A SMG-7 transcript varian 23.6 2.5E+02 0.0086 27.2 8.4 61 184-245 154-214 (497)
475 3efz_A 14-3-3 protein; 14-3-3, 21.8 4.1E+02 0.014 23.3 12.1 55 158-212 169-226 (268)
476 4e8u_A Putative uncharacterize 21.1 1.4E+02 0.0048 24.3 5.0 46 393-441 14-70 (172)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.97 E-value=1e-28 Score=255.00 Aligned_cols=244 Identities=15% Similarity=0.177 Sum_probs=200.2
Q ss_pred hHhHHHHHHHHHHHHhcC-------ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHcCCCc
Q 013489 20 SEKFQQYMIYLKYEQSSG-------DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR-DVYSRATKNCPWV 91 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g-------~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~-~v~erAl~~~p~s 91 (442)
...+..|+.|++||+..+ ..+|++.+||+||..+|.++++|++|+.|+...++. +.++ .||+||+.+||.+
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~-~~a~r~il~rAi~~~P~s 377 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD-STVITKYLKLGQQCIPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC-TTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHhCCCC
Confidence 356789999999999865 246788999999999999999999999999877543 4565 9999999999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH------------------HHHHHHHHHHHHHHHHHhhccCccch
Q 013489 92 GELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF------------------EEYLDLFLTRIDGLRRRILFSGEVEG 153 (442)
Q Consensus 92 ~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~------------------~~~~~~~~~~~~~l~rr~~~~~~~~~ 153 (442)
..||..|+.+.+. .++.+.++.+|++++...+... ...-.+|..++...+|.
T Consensus 378 ~~Lwl~~a~~ee~-~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~--------- 447 (679)
T 4e6h_A 378 AVLAFSLSEQYEL-NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI--------- 447 (679)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc---------
Confidence 9999999997776 6789999999999997532110 01334677776555443
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccH
Q 013489 154 VLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHI 233 (442)
Q Consensus 154 ~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~ 233 (442)
.++...|.+|.+|+..+ ......+|..+|.+|...+++++.||++|+++|+.+|+...+|+.|++|+...|+.
T Consensus 448 -~~l~~AR~vf~~A~~~~------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 448 -QGLAASRKIFGKCRRLK------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp -HCHHHHHHHHHHHHHTG------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred -CCHHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 35667888888887752 12235689999999999886799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhc
Q 013489 234 NEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 234 ~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
++||.+|++|+....+...+..||..|++||..+|+++++..+.+++.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999998532234577999999999999999999988777763
No 2
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.94 E-value=6.2e-25 Score=226.87 Aligned_cols=268 Identities=12% Similarity=0.103 Sum_probs=193.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcch----
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD---PGRVQLLYERAITDFP--VSSDLWLDYTQYLDKTLKV---- 73 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~---~~~~~~lyERal~~~p--~~~~lW~~Y~~~l~~~~~~---- 73 (442)
.+|..||.+|...|. ....|..|+++|.+.|+ ++.+..+|+|||..+| .++++|..|+.|+......
T Consensus 84 ~aR~vyEraL~~fP~----~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~ 159 (679)
T 4e6h_A 84 QVYETFDKLHDRFPL----MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGG 159 (679)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccccc
Confidence 578999999999887 77889999999999888 9999999999999984 7889999999998765432
Q ss_pred ---hhHHHHHHHHHHHcC----CCcHHHHHHHHHHHHH--------ccCCHHHHHHHHHHHHhCChhhHH----HHHHHH
Q 013489 74 ---GNVVRDVYSRATKNC----PWVGELWVRSLLSLER--------SRASEEEISTVFEKSLLCAFSTFE----EYLDLF 134 (442)
Q Consensus 74 ---~~~~~~v~erAl~~~----p~s~~lW~~y~~~le~--------~~~~~~~~~~i~~~al~~~~~~~~----~~~~~~ 134 (442)
.+.++.+|++|+..+ |.++.||..|+.++.. .++..+.++.||+++|..|...+. .|..+.
T Consensus 160 ~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe 239 (679)
T 4e6h_A 160 EEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWE 239 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 245789999999865 4478899999987653 123357799999999987654322 222211
Q ss_pred HHH--------H-----HHHH-HH-----------hh---cc---------------------CccchhhhH--------
Q 013489 135 LTR--------I-----DGLR-RR-----------IL---FS---------------------GEVEGVLDY-------- 157 (442)
Q Consensus 135 ~~~--------~-----~~l~-rr-----------~~---~~---------------------~~~~~~~~~-------- 157 (442)
... + +|.. |. +. .. ..|..+.++
T Consensus 240 ~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 240 QDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 110 0 0000 00 00 00 001111222
Q ss_pred ------HHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHhc
Q 013489 158 ------SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSAR-GVWERLLKISGAMLEAWQSYISMEIEL 230 (442)
Q Consensus 158 ------~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar-~i~~~~l~~~~~~~~~w~~~~~~e~~~ 230 (442)
.+++.+|++|+.. .+...++|..|++++...| +.+.|+ ++|++++..+|.+..+|+.|+.+|...
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~-------~p~~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQH-------VCFAPEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------TTTCHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 2344555666554 4566789999999999998 788886 999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcc----------cCCC---------ChHHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 231 DHINEARSIYKRCYSKR----------FTGT---------GSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 231 g~~~~ar~i~~ral~~~----------~~~~---------~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
|++++||.||++++... .+.. ....+|..|++||+..|+++..+.++.++..
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999731 1110 1345899999999999999888887777643
No 3
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.5e-23 Score=198.22 Aligned_cols=241 Identities=21% Similarity=0.275 Sum_probs=188.9
Q ss_pred ChHhHHHHHHHHHHHHhc----CCh----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cchh-------hHH
Q 013489 19 DSEKFQQYMIYLKYEQSS----GDP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVG-------NVV 77 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~----g~~----~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~------~~~~-------~~~ 77 (442)
++.+...|+.|++||++. +++ +++..+|+++|..+|.++++|..|+.++... .++. +.+
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 345788999999999986 243 6888999999999999999999999998643 2333 679
Q ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhh
Q 013489 78 RDVYSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (442)
Q Consensus 78 ~~v~erAl~-~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~ 156 (442)
+.+|+||+. ..|.+..+|..|+.+++. .++.+.++.+|++++...+..... +|..+...+.+ . .+
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~-~---------~~ 149 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFARR-A---------EG 149 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSSSSCTHH---HHHHHHHHHHH-H---------HC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccccCccH---HHHHHHHHHHH-h---------cC
Confidence 999999999 579999999999986665 688999999999999987653321 33333322221 1 34
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHH
Q 013489 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~a 236 (442)
+...+..|++|+.. .+....+|..++.++....++++.|+.+|++++..+|++..+|..|+.++...|++++|
T Consensus 150 ~~~A~~~~~~a~~~-------~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 150 IKSGRMIFKKARED-------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHHHTS-------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 44555566666543 34446788888888876433999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 237 RSIYKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 237 r~i~~ral~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
+.+|++|+... ++++....+|..|+.||..+|+.+....+..+.
T Consensus 223 ~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999841 233346689999999999999998877655543
No 4
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.93 E-value=4e-24 Score=214.66 Aligned_cols=245 Identities=12% Similarity=0.116 Sum_probs=186.5
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC-------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNV 76 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~-------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~ 76 (442)
+|..|+.++...+. .+.+.|..|++||+.++. ..++..+|+|||..+|.++.+|++|+.|+... ++.+.
T Consensus 156 ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-~~~~~ 231 (493)
T 2uy1_A 156 SFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI-GQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHH
Confidence 46667766644332 145789999999986521 46789999999999999999999999999865 46688
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh-----hhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013489 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF-----STFEEYLDLFLTRIDGLRRRILFSGEV 151 (442)
Q Consensus 77 ~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~-----~~~~~~~~~~~~~~~~l~rr~~~~~~~ 151 (442)
++.||+||+.. |++..||..|+.+++. . +..+.++++.+.... ........+|..|+.+++|.
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~e~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~------- 299 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVMDE--E--AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK------- 299 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHTTC--T--HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhcch--h--HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc-------
Confidence 99999999999 9999999999875432 1 113333333211110 01122346777777666543
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Q 013489 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (442)
Q Consensus 152 ~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g 231 (442)
.++...|.+|++| .. ......+|..+|.+|...+++++.||.+|+.+++.+|+...+|+.|++||...|
T Consensus 300 ---~~~~~AR~i~~~A-~~-------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 300 ---RGLELFRKLFIEL-GN-------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp ---HCHHHHHHHHHHH-TT-------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHh-hC-------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 3466778888888 21 112356899999999998867999999999999999998999999999999999
Q ss_pred cHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 232 HINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
+.++||.+|+++.. ...+|..|++||..+|++++++.++++...
T Consensus 369 ~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 DEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999832 468999999999999999999887776544
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=6e-22 Score=201.41 Aligned_cols=240 Identities=21% Similarity=0.265 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHhcC----Ch----hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cchhh-------HHHHH
Q 013489 22 KFQQYMIYLKYEQSSG----DP----GRVQLLYERAITDFPVSSDLWLDYTQYLDKT------LKVGN-------VVRDV 80 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g----~~----~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~------~~~~~-------~~~~v 80 (442)
....|..|+.++...+ ++ .++..+|++||..+|.++.+|+.|+.++... .++.+ .++.+
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 4679999999998643 33 4788999999999999999999999998852 34433 79999
Q ss_pred HHHHHH-cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHH
Q 013489 81 YSRATK-NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSL 159 (442)
Q Consensus 81 ~erAl~-~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~ 159 (442)
|+||+. .+|.+..+|..|+.+++. .++.+.++.+|++++..++.... .+|..+...+++ . .++..
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~-~---------~~~~~ 374 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARR-A---------EGIKS 374 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHH-H---------HHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHh-cCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHHH-h---------cCHHH
Confidence 999998 789999999999986655 68899999999999998765422 234433333322 1 23445
Q ss_pred HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHH
Q 013489 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (442)
Q Consensus 160 ~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i 239 (442)
.+..|++|+.. .+....++...+.++....++++.|+.+|+++++.+|+++.+|+.|++++...|++++||.+
T Consensus 375 A~~~~~~Al~~-------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 375 GRMIFKKARED-------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHTC-------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhc-------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 55566666542 33334566666666654334999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-cCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 240 YKRCYSKR-FTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 240 ~~ral~~~-~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
|++|+... .++.....+|..|++||..+|+.+++..+..++..
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999842 11123457999999999999999998877766543
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=4.8e-21 Score=194.73 Aligned_cols=271 Identities=15% Similarity=0.188 Sum_probs=192.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhh----HHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGN----VVR 78 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~----~~~ 78 (442)
.+|..||.+|...|. +...|..|+.++...|+++.++.+|+|||..+| ++++|+.|+.|+....++.+ .++
T Consensus 30 ~a~~~~e~al~~~P~----~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 30 KARKTYERLVAQFPS----SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 578999999999886 788999999999999999999999999999999 78899999998876544433 355
Q ss_pred HHHHHHHHcC---CCcHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHhCChhhH---H-HHHHHHHHH------
Q 013489 79 DVYSRATKNC---PWVGELWVRSLLSLERS--------RASEEEISTVFEKSLLCAFSTF---E-EYLDLFLTR------ 137 (442)
Q Consensus 79 ~v~erAl~~~---p~s~~lW~~y~~~le~~--------~~~~~~~~~i~~~al~~~~~~~---~-~~~~~~~~~------ 137 (442)
.+|++|+..+ |.+..+|..|+.++... .+..+.++.+|++++..+.... + .|..+....
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 6999999876 46789999999866541 4567889999999998543321 1 121111000
Q ss_pred --H-----HHHHHH-----------hhcc-------C----------ccchhhhHHHHH--------HHHHHHHHHHhhh
Q 013489 138 --I-----DGLRRR-----------ILFS-------G----------EVEGVLDYSLIR--------ETFQRASDYLSEQ 174 (442)
Q Consensus 138 --~-----~~l~rr-----------~~~~-------~----------~~~~~~~~~~~r--------~~~~~a~~~l~~~ 174 (442)
+ .+...+ .... . .+..+.++..-. ....+++..+..+
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0 000000 0000 0 000111111000 0012333344444
Q ss_pred hcCchhhHHHHHHHHHHHHH-------cCCCHH-------HHHHHHHHHHH-hchhHHHHHHHHHHHHHhcccHHHHHHH
Q 013489 175 MKNTDGLLRLYAYWAHLEQS-------MGKDMV-------SARGVWERLLK-ISGAMLEAWQSYISMEIELDHINEARSI 239 (442)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~-------~~~~~~-------~ar~i~~~~l~-~~~~~~~~w~~~~~~e~~~g~~~~ar~i 239 (442)
+...+....+|..|+.++.. .| +++ .|+.+|++++. .+|++..+|..|+.++...|++++|+.+
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44445667899999999876 56 776 89999999998 6899999999999999999999999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhc
Q 013489 240 YKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 240 ~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
|++++. .++..+..+|..|..|++..|+.+....++.++.
T Consensus 344 ~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 344 YNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999997 3445555799999999999998877766666653
No 7
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.87 E-value=1.2e-20 Score=189.45 Aligned_cols=216 Identities=14% Similarity=0.088 Sum_probs=150.9
Q ss_pred chhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 2 CNARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 2 ~~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
..+|..||.+|...|. |+++++..+|+|||..+| ++++|..|+.|........+.++.+|
T Consensus 12 ~~aR~vyer~l~~~P~-------------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-------------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp CCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HHHHHHHHHHHHHCCC-------------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 4578888888877652 678999999999999998 99999999999998765556789999
Q ss_pred HHHHHcC---CCcHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhh--ccCcc-c
Q 013489 82 SRATKNC---PWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL--FSGEV-E 152 (442)
Q Consensus 82 erAl~~~---p~s~~lW~~y~~~le~---~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~--~~~~~-~ 152 (442)
++|+.++ |.++.||..|+.+++. .++..+.++.+|++|+..+......+ |..|..+...... ....+ +
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~l---w~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSEL---WKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHH---HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHH---HHHHHHHHHHhccccHHHHHHH
Confidence 9999975 6789999999997642 13456789999999999766544332 3222222111000 00000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISM 226 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~------~~~ar~i~~~~l~~~~~~~~~w~~~~~~ 226 (442)
...++...+..+..+...+.. ....+|..|+.+|...+.. ..+++.+|++++..+|....+|+.|+.|
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRG------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 001222334444444443321 1346899999998754211 3567889999999999889999999999
Q ss_pred HHhcccHHHHHHHHHHHHhc
Q 013489 227 EIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 227 e~~~g~~~~ar~i~~ral~~ 246 (442)
+...|+++.||.+|++|+..
T Consensus 223 ~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC
Confidence 99999999999999999973
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=6.4e-19 Score=166.29 Aligned_cols=217 Identities=15% Similarity=0.178 Sum_probs=175.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHh-------cCCh-------hhHHHHHHHHHh-cCCCCHHHHHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS-------SGDP-------GRVQLLYERAIT-DFPVSSDLWLDYTQYL 67 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~-------~g~~-------~~~~~lyERal~-~~p~~~~lW~~Y~~~l 67 (442)
.+...|+.+|...|. +.++|..|+.++.. .|++ +.++.+|+|||. .+|.+..+|..|+.++
T Consensus 34 ~a~~~~~~al~~~p~----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 34 RVMFAYEQCLLVLGH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 355799999998886 88899999999864 4886 899999999999 6999999999999988
Q ss_pred HHhcchhhHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhh
Q 013489 68 DKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRIL 146 (442)
Q Consensus 68 ~~~~~~~~~~~~v~erAl~~~p~s~~-lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~ 146 (442)
... +..+.++.+|++|+...|.... +|..|+.++.+ .+..+.++.+|++|+...+..+..++..- . +..+.
T Consensus 110 ~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a--~---~~~~~- 181 (308)
T 2ond_A 110 ESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAA--L---MEYYC- 181 (308)
T ss_dssp HHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHH--H---HHHHT-
T ss_pred Hhc-CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHH--H---HHHHH-
Confidence 755 4667899999999999998876 99999986654 67889999999999988766543333111 0 00000
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---ch-hHHHHHHH
Q 013489 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG-AMLEAWQS 222 (442)
Q Consensus 147 ~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~---~~-~~~~~w~~ 222 (442)
..++...+..|++|+.. .+....+|..++.++...| +++.|+.+|++++.. .| +...+|..
T Consensus 182 -------~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~l~p~~~~~l~~~ 246 (308)
T 2ond_A 182 -------SKDKSVAFKIFELGLKK-------YGDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWAR 246 (308)
T ss_dssp -------SCCHHHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 13455666777777765 3445679999999999999 999999999999995 45 36789999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhc
Q 013489 223 YISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 223 ~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
|+.|+...|+.+.|+.++++++..
T Consensus 247 ~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 247 FLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999973
No 9
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=2.4e-13 Score=130.56 Aligned_cols=237 Identities=11% Similarity=-0.012 Sum_probs=134.3
Q ss_pred HHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 6 AHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 6 ~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
..++..+...+.....+...|...+......|+++.+..+|++++..+|.+...|...+..+... ++.+.+...|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN-ENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 34444444333211123446778888788889999999999999999999999999888877644 45677899999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHH-------------------HHHHHHHHHHHhh
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL-------------------FLTRIDGLRRRIL 146 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~-------------------~~~~~~~l~rr~~ 146 (442)
...|.....|...+..+. ..++.+.+...|++++...+.....+..+ +......+.+-+.
T Consensus 127 ~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999988888888776444 46888899999999987655421111000 0000111110000
Q ss_pred -ccC--ccchh---hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHH
Q 013489 147 -FSG--EVEGV---LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 147 -~~~--~~~~~---~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
.+. ....+ ..+......+++|+.++...+...+....+|...+.++...| +++.|...|++++..+|+...+|
T Consensus 206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD-RSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHH
Confidence 000 00000 000011122334444444443333334445555555555555 56666666666666555555555
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 221 QSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 221 ~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
...+.+....|+++.|...|++++.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555666666666666554
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=3e-12 Score=123.97 Aligned_cols=266 Identities=14% Similarity=0.066 Sum_probs=156.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...++.++...|. +...|...+......|+++.+..+|++++...|.+...|...+..+... +..+.+...|+
T Consensus 51 ~a~~~~~~a~~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 125 (388)
T 1w3b_A 51 RSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAYV 125 (388)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-SCSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 455667777777665 5667777777777788888888888888888888888887777666543 34566778888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHh-hccCccc
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRI-LFSGEVE 152 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~-~~~~~~~ 152 (442)
+++...|....+|...... ....+..+++..+|++++...+.....+..+-..+ +..+.+-+ ..+...+
T Consensus 126 ~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 126 SALQYNPDLYCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHHHHCTTCTHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCcHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 8888778777777776653 33467777778888887765554332222211111 00010000 0000000
Q ss_pred hhhhH---HHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Q 013489 153 GVLDY---SLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (442)
Q Consensus 153 ~~~~~---~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~ 229 (442)
.+... ......+++|+..+...+...+....+|...+.+....| +++.|...|++++...|+...+|...+.....
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 00000 000011233444443333333444556666677777777 77777777777777777777777777777777
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.|+++.|..+|++++.. .++.+ .++..........|+.+.-....+
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHA-DSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777762 22333 344444555555566554443333
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=5.8e-12 Score=118.34 Aligned_cols=264 Identities=9% Similarity=0.039 Sum_probs=164.9
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...+..++......|+++.+..+|++++..+|.++..|...+..+...+...+.+...|+
T Consensus 40 ~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 40 MCYKLTSVVMEKDPF----HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp HHHHHHHHHHHHCTT----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456677777777664 4455666666666677777777778888777777777777777666544425566777777
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHH---------HHHHHHHHhh-ccCccc
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT---------RIDGLRRRIL-FSGEVE 152 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~---------~~~~l~rr~~-~~~~~~ 152 (442)
+++...|.....|......+. ..++.+.+...|++++...+.....+..+-.. ....+.+-+. .+....
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 777777777777777665433 35677777777777776544321111111100 1111111100 001000
Q ss_pred ----------hhhhHHHHHHHHHHHHHHHhhhhcC--chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHH
Q 013489 153 ----------GVLDYSLIRETFQRASDYLSEQMKN--TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 153 ----------~~~~~~~~r~~~~~a~~~l~~~~~~--~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
...++......|++++......... .+....+|...+.+....| +++.|...|++++...|++..+|
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK-KYAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCccchHHH
Confidence 0122333334444444433221111 1334568888999998899 99999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHH
Q 013489 221 QSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFD 274 (442)
Q Consensus 221 ~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~ 274 (442)
...+.+....|+++.|...|++++. +.++.+......-..++...|+.+.+.
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~a~~ 325 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSEAYI 325 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchhccC
Confidence 9999999999999999999999997 344555444444444677788876544
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=4.5e-12 Score=119.13 Aligned_cols=222 Identities=9% Similarity=-0.065 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+.+.+...+......|+++.+..+|++++...|.+...|..++..+... +..+.+..+|++++...|.+..+|......
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL-NKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4556777777778889999999999999999999999999888877644 466789999999999999999999998876
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhh-ccCccchhh---hHHHHHHHHHHHH
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSGEVEGVL---DYSLIRETFQRAS 168 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~-~~~~~~~~~---~~~~~r~~~~~a~ 168 (442)
+.......+.+...|++++...+.....+..+-..+ +..+.+-+. .......+. ........++.|.
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 655333889999999999987665333222211111 011110000 000000000 0000112234455
Q ss_pred HHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------hhHHHHHHHHHHHHHhcccHHHHHHH
Q 013489 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---------GAMLEAWQSYISMEIELDHINEARSI 239 (442)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~---------~~~~~~w~~~~~~e~~~g~~~~ar~i 239 (442)
.++...+...+....+|...+.+....| +++.|..+|++++... |....+|...+.+....|+++.|..+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNG-EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5554444444444455555555555555 5666666666666553 33345555555555555666666666
Q ss_pred HHHHHh
Q 013489 240 YKRCYS 245 (442)
Q Consensus 240 ~~ral~ 245 (442)
|++++.
T Consensus 259 ~~~a~~ 264 (330)
T 3hym_B 259 HRQALV 264 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=7.6e-12 Score=121.15 Aligned_cols=266 Identities=13% Similarity=0.106 Sum_probs=193.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.++...|. +...|...+......|+++.+...|++++..+|.+...|......+.. .+..+.+..+|+
T Consensus 85 ~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 159 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD----FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-LGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 577889999988775 677899898888889999999999999999999999999998887764 356677999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhh-ccCccc
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSGEVE 152 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~-~~~~~~ 152 (442)
+++...|.....|......+ ...+..+.+...|++++...+.....+..+-..+ +..+.+-+. .+....
T Consensus 160 ~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGCVF-NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 99999999999998877644 4578889999999999987776544433322211 111111110 111110
Q ss_pred hhhh---HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Q 013489 153 GVLD---YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE 229 (442)
Q Consensus 153 ~~~~---~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~ 229 (442)
.+.. .-.....++.|+.++...+...+.....|...+.+....| +++.|..+|++++..+|++..+|...+.+...
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 0000 0011123466777776666655666678888999999999 99999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 230 LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
.|+++.|..+|++++.. .++.+ .++......-...|+.+.-...++
T Consensus 318 ~g~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV--FPEFA-AAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp TTCHHHHHHHHHHHTTS--CTTCH-HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCCcH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999973 33333 345555555555676554443333
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.52 E-value=3.4e-12 Score=122.25 Aligned_cols=269 Identities=12% Similarity=0.076 Sum_probs=166.8
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
.|+.++...+.....+...|...+......|+++.+..+|++++...|.+...|...+..+... +..+.+...|++++.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 126 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISALRRCLE 126 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHh
Confidence 5676765554311112345777777777888999999999999999999999988888766643 456778899999999
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHH------------------HH------HHHHHHHHHH
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY------------------LD------LFLTRIDGLR 142 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~------------------~~------~~~~~~~~l~ 142 (442)
..|....+|...+..+. ..+..+.+...|++++...+.....+ +. -+...+..+.
T Consensus 127 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 205 (368)
T 1fch_A 127 LKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205 (368)
T ss_dssp HCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHH
Confidence 88988888888776444 46788888889998887654321110 00 0001111111
Q ss_pred HHhh-ccC--ccchhh---hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 143 RRIL-FSG--EVEGVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 143 rr~~-~~~--~~~~~~---~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
+-+. .+. ....+. .+......++.|+.++..++...+....+|...+.+....| +++.|..+|++++...|+.
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-QSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCc
Confidence 1000 011 000000 00111122455555555554434445567777777777777 7888888888888877777
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCC-C--------hHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 217 LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGT-G--------SEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 217 ~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~-~--------~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
..+|...+.+....|+++.|...|++++... +.. . ...+|......-...|..+....+..+
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7777777777777788888888888877632 211 0 134566666666666776666555443
No 15
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.51 E-value=1.3e-13 Score=110.64 Aligned_cols=60 Identities=10% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
||+.||.++. .+ |+++||.+|+.+++.+..-..+|+.|++||.++|++.+||+|+.+|+.
T Consensus 63 LWIrYA~~~e-i~-D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 63 IQVRFAELKA-IQ-EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHHHHH-HH-CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hc-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 7778887754 35 899999999999988666688999999999999999999999999997
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.49 E-value=2e-11 Score=115.93 Aligned_cols=214 Identities=14% Similarity=0.010 Sum_probs=115.5
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
|...|+.++...|. +...|...+......|+++.+...|++++...|.+...|...+..+... ++.+.+...|++
T Consensus 22 A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 96 (359)
T 3ieg_A 22 ALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ-GKLDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc-CChHHHHHHHHH
Confidence 44556666655553 4556666666666666666666666666666666666666666555433 344556666666
Q ss_pred HHHcCC---CcHHHHHHH------------HHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 013489 84 ATKNCP---WVGELWVRS------------LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFS 148 (442)
Q Consensus 84 Al~~~p---~s~~lW~~y------------~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~ 148 (442)
++...| .....|..+ +. +....+..+.+..+|++++...+.....+..+-..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 165 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQAL-DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI---------- 165 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH----------
Confidence 666666 555555444 12 2223455666666666666544433222211111110
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHH-----
Q 013489 149 GEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSY----- 223 (442)
Q Consensus 149 ~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~----- 223 (442)
....++.|+.++...+...+.....|...+.+....| +++.|...|++++...|+....|..+
T Consensus 166 -----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 166 -----------KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG-DHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233 (359)
T ss_dssp -----------HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 0112333444444444333444456666666666666 66666666666666666655544433
Q ss_pred -------HHHHHhcccHHHHHHHHHHHHh
Q 013489 224 -------ISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 224 -------~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+......|+++.|..+|++++.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334455666666666666665
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=9.6e-12 Score=119.26 Aligned_cols=244 Identities=11% Similarity=-0.014 Sum_probs=151.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPV----SSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~~~p~----~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
|+.........+.. ..++.++...+. +...|...+..+... ++.+.+..+|++++...|....+|......
T Consensus 34 wl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 108 (365)
T 4eqf_A 34 WISENQEAQNQVTV----SASEKGYYFHTENPFKDWPGAFEEGLKRLKE-GDLPVTILFMEAAILQDPGDAEAWQFLGIT 108 (365)
T ss_dssp -----------------------CCCCCSSCTTTTCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhh----HHHHHhhhcccCCcccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 66555533323333 334454444443 345588888777654 456789999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhh-ccC---ccchh----------hhHH
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSG---EVEGV----------LDYS 158 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~-~~~---~~~~~----------~~~~ 158 (442)
+. ..++.+.+...|++++...+.....+..+-..+ +..+.+-+. .+. ..... ....
T Consensus 109 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 109 QA-ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 55 478899999999999987665433332221111 111111110 000 00000 0011
Q ss_pred HHHHHHHHHHHHHhhhhcCchh--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHH
Q 013489 159 LIRETFQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA 236 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~a 236 (442)
.....+++|+.++...+...+. ...+|...+.++...| +++.|..+|++++...|++..+|..++......|+++.|
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1123455666666555544444 5678888999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 237 RSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 237 r~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
..+|++++.. .++.+ .++..........|+.+.-...+++
T Consensus 267 ~~~~~~al~~--~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 267 VEAYTRALEI--QPGFI-RSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHHHHH--CTTCH-HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCch-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999973 33333 4555566666667776554444444
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=3.1e-12 Score=113.86 Aligned_cols=198 Identities=14% Similarity=-0.013 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+...|..........|+++.+...|+++|..+|.++..|......+... +..+.+...|++++...|.....|..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL-GLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5567888888888999999999999999999999999999998877654 556779999999999999999999887765
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHH
Q 013489 102 LERSR-----------ASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDY 170 (442)
Q Consensus 102 le~~~-----------~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~ 170 (442)
+.. . +..+++...|++++...|.....+..+-..+. .. .++......|++++..
T Consensus 83 ~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-----~~---------g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 83 YVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-----LL---------GERDKAEASLKQALAL 147 (217)
T ss_dssp HHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHHH
T ss_pred HHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-----Hc---------CChHHHHHHHHHHHhc
Confidence 544 4 55666777777777665553332222211110 00 2233333344444332
Q ss_pred HhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 171 LSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 171 l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
. ....+|...+.+....| +++.|...|++++..+|++..+|..++.+....|+++.|...|+++-
T Consensus 148 -------~-~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 -------E-DTPEIRSALAELYLSMG-RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -------C-CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred -------c-cchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2 33446666666666666 67777777777777777777777777777777777777777776654
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.46 E-value=2e-11 Score=120.22 Aligned_cols=232 Identities=13% Similarity=0.017 Sum_probs=134.0
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
.+...+...| .+...|...+......|+++.+..+|++++..+|.+...|...+..+... +..+.+...|++++.
T Consensus 14 ~~~~~~~~~p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 14 GTENLYFQSM----ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIQ 88 (450)
T ss_dssp ---------C----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred cccccccccH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 3445555544 37778888888777888888888888888888888888888887766543 455678888888888
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH---HHHHHHHHH---------------------HHHHHH
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF---EEYLDLFLT---------------------RIDGLR 142 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~---~~~~~~~~~---------------------~~~~l~ 142 (442)
..|.....|...+..+.. .+..+.+..+|++++...+... ..+..+... .+..+.
T Consensus 89 ~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888777764443 6778888888888887655432 221111000 000000
Q ss_pred HHhh-ccCccchhh---hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 143 RRIL-FSGEVEGVL---DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 143 rr~~-~~~~~~~~~---~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
+-+. .+.....+. .+-.....++.|+.++...+...+.....|...+.+....| +++.|..+|++++...|+...
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG-DHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCChHH
Confidence 0000 000000000 00000011233444444333323334456666777777777 777777777777777777666
Q ss_pred HHHHH------------HHHHHhcccHHHHHHHHHHHHh
Q 013489 219 AWQSY------------ISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 219 ~w~~~------------~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+|..+ +......|+++.|..+|++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66555 5566666777777777777775
No 20
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.46 E-value=7.2e-14 Score=107.83 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||||||+++|+++|+.+|++||.|.+|+|+.|+.+|+++|||||+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~ 69 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEEC
Confidence 44569999999999999999999999999999999999999999999999995
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.46 E-value=1e-11 Score=116.49 Aligned_cols=219 Identities=10% Similarity=-0.026 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
..|...+......|+++.+..+|++++..+|.+...|...+..+... ++.+.+...|++++...|.....|...+..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 34555566566677777777777777777777777777766655533 44566777777777777777777776665443
Q ss_pred HccCCHHHHHHHHHHHHhCChhhHHHHHHH------------------H------HHHHHHHHHHhh-ccCccchh---h
Q 013489 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDL------------------F------LTRIDGLRRRIL-FSGEVEGV---L 155 (442)
Q Consensus 104 ~~~~~~~~~~~i~~~al~~~~~~~~~~~~~------------------~------~~~~~~l~rr~~-~~~~~~~~---~ 155 (442)
..+..+.+...|++++...+.....+..+ + ......+.+-+. .......+ .
T Consensus 101 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 -NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp -HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred -HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 35667777777777775543311110000 0 000000100000 00000000 0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ 235 (442)
.+-.....++.|+.++...+...+....+|...+.+....| +++.|..+|++++...|+...+|...+.+....|+++.
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN-RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 00000112344444444443333444556666666666666 77777777777777777767777777777777777777
Q ss_pred HHHHHHHHHh
Q 013489 236 ARSIYKRCYS 245 (442)
Q Consensus 236 ar~i~~ral~ 245 (442)
|...|++++.
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777775
No 22
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=7.3e-11 Score=116.26 Aligned_cols=201 Identities=13% Similarity=0.018 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013489 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSL 120 (442)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al 120 (442)
.....+.+++..+|.+...|...+..+... ++.+.+..+|++++...|....+|...+..+. ..+..+.+...|++++
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAA-GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 345568888889999999999999877754 46678999999999999999999999887554 4788999999999999
Q ss_pred hCChhhHHHHHHHHHHH---------HHHHHHHhhc--cCcc---chhhhH---------------HHHHHHHHHHHHHH
Q 013489 121 LCAFSTFEEYLDLFLTR---------IDGLRRRILF--SGEV---EGVLDY---------------SLIRETFQRASDYL 171 (442)
Q Consensus 121 ~~~~~~~~~~~~~~~~~---------~~~l~rr~~~--~~~~---~~~~~~---------------~~~r~~~~~a~~~l 171 (442)
...+.....+..+-..+ ...+. +... +... ..+..+ ......++.|+.++
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFK-KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87665433332222111 11111 1111 1110 000000 01122346677777
Q ss_pred hhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 172 SEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 172 ~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
...+...+....++...+.+....| +++.|..+|++++..+|++..+|...+.+....|+++.|..+|++++.
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEG-EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666555566678888999999999 999999999999999999999999999999999999999999999997
No 23
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=5.2e-11 Score=121.89 Aligned_cols=264 Identities=11% Similarity=-0.021 Sum_probs=158.7
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+++..|+..+.. + .+...|...+......|+++.+..+|++++...|.+...|..++..+... +..+.+..+|+
T Consensus 290 ~A~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 363 (597)
T 2xpi_A 290 RAEDYLSSINGL-E----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHTSTTG-G----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHhhcC-C----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 345556655544 2 36778999999888899999999999999998899888998888877644 45567888999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhh-ccCccc
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSGEVE 152 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~-~~~~~~ 152 (442)
+++...|....+|...+..+. ..+..+++..+|++++...+.....+..+-..+ +..+.+-+. ......
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYL-CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHhhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 999888888888888766444 468888899999998876554332222111111 011110000 000000
Q ss_pred hh---hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------chhH-HHHHHH
Q 013489 153 GV---LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI------SGAM-LEAWQS 222 (442)
Q Consensus 153 ~~---~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~------~~~~-~~~w~~ 222 (442)
.+ ...-...+.+++|..++...+...+.....|...+.+....| +++.|..+|++++.. .|+. ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 00 000011122344444444443323333455666666666666 677777777777666 3333 556777
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 223 YISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 223 ~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
.+......|+++.|..+|++++.. .++.+ .+|..........|+.+.....+
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLL--STNDA-NVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SSCCH-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHHhCCHHHHHHHH
Confidence 777766777777777777777652 22222 45555555555666655444333
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=3.7e-11 Score=122.94 Aligned_cols=251 Identities=10% Similarity=-0.018 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~ 105 (442)
|...+......|+++.+..+|++++.. |.+...|...+..+... +..+.+..+|++++...|.....|..++..+. .
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 351 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR-SRFIDVLAITTKILEIDPYNLDVYPLHLASLH-E 351 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH-H
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-H
Confidence 333344444567889999999999987 78999999999877754 46678999999999999988889988887555 4
Q ss_pred cCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHh-hccCccchh---hhHHHHHHHHHHHHHHHh
Q 013489 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRI-LFSGEVEGV---LDYSLIRETFQRASDYLS 172 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~-~~~~~~~~~---~~~~~~r~~~~~a~~~l~ 172 (442)
.+..+++..+|++++...+.....+..+-..+ ...+.+-+ ........+ ...-...+.+++|+.++.
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78889999999999876554333222211111 11111100 011111100 111111233466777666
Q ss_pred hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcc----c
Q 013489 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKR----F 248 (442)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~----~ 248 (442)
......+.....|...+..+...| +++.|..+|++++...|++..+|...+......|+++.|..+|++++... .
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 665545555667888888888888 89999999999999888888889999999888999999999999988631 0
Q ss_pred CCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 249 TGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 249 ~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
.++....+|..........|+.+.-...+++.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11111357777777777788876655555443
No 25
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=105.30 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=47.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGG--VSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-.||||+|||+++|+++|+++|++||. |.+|++++|+.||++||||||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~ 61 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLS 61 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEEC
Confidence 349999999999999999999999995 679999999999999999999995
No 26
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=2.4e-13 Score=102.38 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=50.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 61 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 61 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999995
No 27
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.42 E-value=8.9e-13 Score=105.44 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=51.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 386 KGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 386 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 90 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFD 90 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEEC
Confidence 34456789999999999999999999999999999999999889999999999996
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.42 E-value=2.9e-10 Score=107.76 Aligned_cols=213 Identities=11% Similarity=-0.012 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+.+.|...+......|+++.+..+|++++..+|.++..|...+..+... ++.+.+...|++++...|.....|......
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4667888888888999999999999999999999999999999877654 466789999999999999999999888775
Q ss_pred HHHccCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCc
Q 013489 102 LERSRASEEEISTVFEKSLLCAF---STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~---~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~ 178 (442)
+. ..+..+.+...|++++...+ .....+..+.... ........ .........++.|+.++...+...
T Consensus 81 ~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 81 LL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD--EMQRLRSQ-------ALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--HHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH--HHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhC
Confidence 54 46889999999999998877 5333222211100 00000000 000011123345555555544445
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+....++...+.+....| +++.|..+|++++...|+...+|...+.+....|+++.|..+|++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEG-EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556678888999999999 9999999999999999999999999999999999999999999999973
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.42 E-value=4.8e-11 Score=114.13 Aligned_cols=238 Identities=10% Similarity=-0.025 Sum_probs=161.4
Q ss_pred cCChhhHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHH
Q 013489 36 SGDPGRVQL-LYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE 110 (442)
Q Consensus 36 ~g~~~~~~~-lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~ 110 (442)
.|+++.+.. .|++++...|.++ ..|...+..+... ++.+.+...|++++...|....+|......+. ..++.+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHH
Confidence 367788888 9999999888764 5577777666644 46678999999999999999999998777444 478899
Q ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHH---------HHHHHHHhh-ccCccch------------------hhhHHHHHH
Q 013489 111 EISTVFEKSLLCAFSTFEEYLDLFLTR---------IDGLRRRIL-FSGEVEG------------------VLDYSLIRE 162 (442)
Q Consensus 111 ~~~~i~~~al~~~~~~~~~~~~~~~~~---------~~~l~rr~~-~~~~~~~------------------~~~~~~~r~ 162 (442)
.+...|++++...+.....+..+-..+ +..+.+-+. .+..... ....-....
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 999999999987665433332222111 111111110 0110000 011111345
Q ss_pred HHHHHHHHHhhhhcCchh--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~ 240 (442)
.+++|+.++...+...+. ...+|...+.+....| +++.|..+|++++...|+...+|...+.+....|+++.|..+|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 567777777766654555 5678888999998889 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 241 KRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 241 ~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
++++.. .++.+ .++..........|+.+.-...+++
T Consensus 275 ~~al~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 275 RRALEL--QPGYI-RSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHH--CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHh--CCCcH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999973 33434 4555556666666776554444443
No 30
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.6e-13 Score=105.34 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=48.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+++|+++|+.+|++||.|.+|+|+.++. |+++|||||+|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~ 60 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFD 60 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEEC
Confidence 3457999999999999999999999999999999999975 999999999995
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.41 E-value=6.8e-14 Score=106.25 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=48.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+|||+|||+++|+++|+.+|++|| .|.+|+|++|+.||++||||||+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~ 52 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFS 52 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEec
Confidence 4899999999999999999999999 8999999999999999999999995
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=106.04 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=49.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+++++++|+++|++||.|.+|+|+.|+.||+++|||||+|.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~ 56 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFT 56 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEEC
Confidence 469999999999999999999999999999999999999999999999996
No 33
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=3.4e-13 Score=106.16 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=48.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~ 75 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 75 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEEC
Confidence 355679999999999999999999999999999999999889999999999995
No 34
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=4e-13 Score=109.52 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=50.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSS--IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||||||+++++++|+.+|++||.|.. |+|+.|+.||++||||||+|.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~ 75 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLS 75 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEEC
Confidence 345679999999999999999999999999976 999999889999999999995
No 35
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.3e-13 Score=106.07 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=50.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 75 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 75 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeC
Confidence 345679999999999999999999999999999999999989999999999995
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=1.7e-10 Score=104.28 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=156.7
Q ss_pred ChHh-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHH
Q 013489 19 DSEK-FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (442)
Q Consensus 19 ~~~~-~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~ 97 (442)
++.. ...|...+......|+++.+..+|++++..+|.+...|...+..+.. .++.+.+...|++++...|....+|..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 4555 67899999988899999999999999999999999999999887664 456678999999999999999999998
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhh
Q 013489 98 SLLSLERSRASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQM 175 (442)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~~al~--~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~ 175 (442)
++..+.. .+..+++..+|++++. ..+.....+..+-..+. .. .++......|++++.
T Consensus 111 la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~---------g~~~~A~~~~~~~~~------ 169 (252)
T 2ho1_A 111 YGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-----QM---------KKPAQAKEYFEKSLR------ 169 (252)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHH------
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHh------
Confidence 8875544 7889999999999998 43333222222111110 10 233333344444433
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 176 KNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 176 ~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..+....++...+.+....| +++.|..+|++++...|+....|...+.+....|+++.|..+|++++.
T Consensus 170 -~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 170 -LNRNQPSVALEMADLLYKER-EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp -HCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 23444567888888888888 899999999999999988888899999998899999999999999987
No 37
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=103.08 Aligned_cols=57 Identities=23% Similarity=0.389 Sum_probs=52.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 385 TKGFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 385 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+....+.++|||+|||+.+++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~ 76 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS 76 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEES
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 333456689999999999999999999999999999999999889999999999995
No 38
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.3e-12 Score=101.79 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 65 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEES
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEEC
Confidence 44579999999999999999999999999999999999889999999999995
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=1.5e-10 Score=111.98 Aligned_cols=203 Identities=9% Similarity=0.015 Sum_probs=159.4
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHH
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRS 98 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y 98 (442)
+++...+|..........|+++++..+|+++|..+|.+..+|......+...+.+.+.+...|++|+...|.+..+|...
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 56778899999998889999999999999999999999999999998887655447889999999999999999999998
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCc
Q 013489 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (442)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~ 178 (442)
...+.. .+..+++...|++|+...+.....+..+-..+ .+. ..++.|+.++..++...
T Consensus 173 g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~-----~~~----------------g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 173 RVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVI-----QEF----------------KLWDNELQYVDQLLKED 230 (382)
T ss_dssp HHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH-----HHH----------------TCCTTHHHHHHHHHHHC
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH-----HHc----------------CChHHHHHHHHHHHHhC
Confidence 775554 68888999999999998877554443322111 111 12233444444444445
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhchhHHHHHHHHHHHHHhcc--cHHHHHHHHHHH
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSA-----RGVWERLLKISGAMLEAWQSYISMEIELD--HINEARSIYKRC 243 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~a-----r~i~~~~l~~~~~~~~~w~~~~~~e~~~g--~~~~ar~i~~ra 243 (442)
+.....|...+.+...+++..+.| ...|.+++..+|++...|.....+....| +++.|...+.++
T Consensus 231 P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 231 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 666778999888888855354666 58999999999999999999998888777 688999888886
No 40
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=98.10 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=49.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.++|||+|||+++++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 55 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFD 55 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEEC
Confidence 4569999999999999999999999999999999999889999999999996
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=8.2e-10 Score=99.58 Aligned_cols=224 Identities=6% Similarity=-0.098 Sum_probs=172.1
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc-------HH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GE 93 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s-------~~ 93 (442)
...+.|...+......|+++.+..+|++++... .++..|...+..+.. .++.+.+...|++++...|.. ..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYE-KGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 456788888888889999999999999999999 889999988887664 456678999999999987765 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhh
Q 013489 94 LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (442)
Q Consensus 94 lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~ 173 (442)
+|......+. ..++.+.+...|++++...+.. . ++ .....+++|+..+..
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-~----~~------------------------~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTA-D----IL------------------------TKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCH-H----HH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCchh-H----HH------------------------HHHhHHHHHHHHHHH
Confidence 7777666444 4688899999999999755441 1 01 011334555555555
Q ss_pred hhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013489 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (442)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (442)
.+...+....+|...+.+....| +++.|...|++++...|++..+|...+......|+++.|..+|++++.. .++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~ 207 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFV 207 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHcCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHH
Confidence 55556666778889999998888 9999999999999999999999999999999999999999999999973 33444
Q ss_pred HHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 254 EDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
.++..........|+.+.-...++++
T Consensus 208 -~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 208 -RAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555566666677766555445444
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=4.4e-10 Score=99.10 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=151.7
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
+.+...|...+......|+++.+..+|++++..+|.+..+|...+..+.. .++.+.+...|++++...|....+|...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45778899999988999999999999999999999999999998887664 45667899999999999999999998887
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhc
Q 013489 100 LSLERSR-ASEEEISTVFEKSLL--CAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (442)
Q Consensus 100 ~~le~~~-~~~~~~~~i~~~al~--~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~ 176 (442)
..+. .. ++.+.+...|++++. ..+.....+..+-..+. .. .++......|++++.
T Consensus 84 ~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~---------~~~~~A~~~~~~~~~------- 141 (225)
T 2vq2_A 84 WFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-----KQ---------GQFGLAEAYLKRSLA------- 141 (225)
T ss_dssp HHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHH-------
T ss_pred HHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHH-------
Confidence 7444 47 889999999999998 22222222221111110 00 233333344444433
Q ss_pred CchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-AMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~-~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..+.....+...+.+....| +++.|..+|++++...| +....|...+.+....|+.+.+..+++.++.
T Consensus 142 ~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAG-QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 23444567778888888888 89999999999999888 7788887778888888899999888888875
No 43
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=6e-13 Score=104.46 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=48.7
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNI----NLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..|||||| |+.+++.+|+.+|+.||.|.+|.++.|+.||+|+|||||+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYA 56 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEEC
Confidence 48999999 999999999999999999999999999999999999999996
No 44
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=100.44 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+++++++|+.+|+.||.|.+ ++++.++.+|+++|||||+|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~ 71 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 71 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEEC
Confidence 34579999999999999999999999999999 999999899999999999995
No 45
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.8e-13 Score=105.11 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 77 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 77 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeC
Confidence 44579999999999999999999999999999999999889999999999995
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=99.86 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 60 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 60 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEEC
Confidence 34569999999999999999999999999999999999889999999999995
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=5e-10 Score=102.22 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=159.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...+..++.+...|...+......|+++.+..+|++++..+|.+..+|...+..+.. .+..+.+...|+
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHHHHH
Confidence 3566788888765433456778999999999999999999999999999999999999999887764 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+++...|....+|......+.. .++.+.+...|++++...+....... +...+ . .. .++.....
T Consensus 102 ~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~---------~~~~~A~~ 165 (275)
T 1xnf_A 102 SVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRSL--WLYLA--E--QK---------LDEKQAKE 165 (275)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHH--H--HH---------HCHHHHHH
T ss_pred HHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCChHHHH--HHHHH--H--Hh---------cCHHHHHH
Confidence 9999999999999988775544 78899999999999987665432221 11111 0 00 22223333
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----HHHHHHHHHHHHHhcccHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA----MLEAWQSYISMEIELDHINEARS 238 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~----~~~~w~~~~~~e~~~g~~~~ar~ 238 (442)
.+.+++.. .+.....|. .+.+....+ +.+.|...+.+++...|. ...+|...+.+....|+++.|..
T Consensus 166 ~~~~~~~~-------~~~~~~~~~-~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 166 VLKQHFEK-------SDKEQWGWN-IVEFYLGNI-SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp HHHHHHHH-------SCCCSTHHH-HHHHHTTSS-CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhc-------CCcchHHHH-HHHHHHHhc-CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence 33333332 222222232 444445556 678999999999987654 36799999999999999999999
Q ss_pred HHHHHHhc
Q 013489 239 IYKRCYSK 246 (442)
Q Consensus 239 i~~ral~~ 246 (442)
.|++++..
T Consensus 237 ~~~~al~~ 244 (275)
T 1xnf_A 237 LFKLAVAN 244 (275)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99999973
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.35 E-value=3.1e-13 Score=104.62 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINL------KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+ ++++++|+.+|++||.|.+|+|+.++.||+++|||||+|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~ 62 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECG 62 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEES
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEEC
Confidence 356999999999 9999999999999999999999999999999999999995
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.2e-10 Score=98.43 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=133.1
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~ 100 (442)
++..+|..........|+++.|...|+++|..+|.++..|...+..+.. .+..+.+...+.+++...|.....|.....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567899999988999999999999999999999999999999887664 456677999999999999999888888765
Q ss_pred HHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchh
Q 013489 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~ 180 (442)
.+.. .+..+.+...+.+++...+ .
T Consensus 82 ~~~~-~~~~~~a~~~~~~a~~~~~-------------------------------------------------------~ 105 (184)
T 3vtx_A 82 ANFM-IDEKQAAIDALQRAIALNT-------------------------------------------------------V 105 (184)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCT-------------------------------------------------------T
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCc-------------------------------------------------------c
Confidence 4433 4556666666666554322 2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
....|...+.+....| +++.|.+.|+++++.+|++..+|...+......|+++.|...|++|+.
T Consensus 106 ~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2234555666667777 899999999999999998889999999988888999999999999986
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.35 E-value=1.1e-12 Score=102.80 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=50.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 63 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYC 63 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999995
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.2e-12 Score=100.84 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+|+|+.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL 65 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999996
No 52
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.34 E-value=6.4e-12 Score=100.84 Aligned_cols=103 Identities=14% Similarity=0.229 Sum_probs=89.4
Q ss_pred hHhHHHHHHHHHHHHhcCCh------hhHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDP------GRVQLLYERAITDFPVS--------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~------~~~~~lyERal~~~p~~--------~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
+.+++.|..|+..+++.|++ ++++.+|+||+...|.. .-+|+.|+.|.. .++++.++++|..|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e--i~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA--IQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH--HHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 34899999999999999999 99999999999988753 359999998854 367889999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
.+|..-..+|+.|+. +|.++++...++.|+.+|+.+++.
T Consensus 88 ~~hKkFAKiwi~~Aq-FEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQ-FELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHhccCCC
Confidence 988767899999999 555589999999999999987654
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.3e-12 Score=101.82 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFM 65 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEEC
Confidence 44579999999999999999999999999999999999999999999999995
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.34 E-value=5.6e-13 Score=101.01 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=46.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+|||||||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~ 53 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVG 53 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEEC
Confidence 4899999999999999999999999 9999999999999999999999995
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.5e-12 Score=102.02 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 73 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 73 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999996
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=4.8e-11 Score=106.97 Aligned_cols=216 Identities=11% Similarity=0.029 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
..|...+......|+++.+..+|++++..+|.+..+|...+..+.. .++.+.+...|++++...|....+|...+..+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3566666666778999999999999999999999999999887764 456678999999999999999999988877554
Q ss_pred HccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHH
Q 013489 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (442)
Q Consensus 104 ~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~ 183 (442)
..++.+.+...|++++...+.....+..+-..+. .. .++......+++++. ..+....
T Consensus 103 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~---------~~~~~A~~~~~~~~~-------~~~~~~~ 160 (243)
T 2q7f_A 103 -VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-----KL---------EQPKLALPYLQRAVE-------LNENDTE 160 (243)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-----HT---------SCHHHHHHHHHHHHH-------HCTTCHH
T ss_pred -HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hh---------ccHHHHHHHHHHHHH-------hCCccHH
Confidence 4688999999999999766554332222111110 10 233333344444443 2344556
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~f 263 (442)
++...+.+....| +++.|..+|++++...|+...+|..++.+....|+++.|..+|++++.. .++.+ .++.....+
T Consensus 161 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~-~~~~~~~~l 236 (243)
T 2q7f_A 161 ARFQFGMCLANEG-MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM-LALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH-HHHHHHTC-
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH-HHHHHHHHH
Confidence 8888899989999 9999999999999999999999999999999999999999999999973 33444 344444444
Q ss_pred HHH
Q 013489 264 ERE 266 (442)
Q Consensus 264 E~~ 266 (442)
...
T Consensus 237 ~~~ 239 (243)
T 2q7f_A 237 GHH 239 (243)
T ss_dssp ---
T ss_pred Hhh
Confidence 433
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=99.89 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 63 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFH 63 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEES
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEEC
Confidence 44679999999999999999999999999999999999889999999999995
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.33 E-value=6e-10 Score=104.28 Aligned_cols=218 Identities=10% Similarity=0.017 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Q 013489 57 SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLT 136 (442)
Q Consensus 57 ~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~ 136 (442)
...|...+..+... ++.+.+..+|++++...|....+|...+..+. ..+..+.+...|++++...+.....+..+-..
T Consensus 21 ~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKL-ANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556665555533 45677999999999999999999998776444 46889999999999998766543333222111
Q ss_pred H---------HHHHHHHhh-ccCccchhhh------------------HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHH
Q 013489 137 R---------IDGLRRRIL-FSGEVEGVLD------------------YSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (442)
Q Consensus 137 ~---------~~~l~rr~~-~~~~~~~~~~------------------~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (442)
+ ...+.+-+. .+........ +......+++|+.++...+...+....++...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 1 111111110 0110000000 01112445666666666655455566788889
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013489 189 AHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (442)
Q Consensus 189 a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (442)
+.+....| +++.|..+|++++...|+...+|...+.+....|+++.|..+|++++.. .++.+ .++..........|
T Consensus 179 a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 179 GVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYV-RVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHTT
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH-HHHHHHHHHHHHhc
Confidence 99988889 9999999999999999999999999999999999999999999999973 33334 45556666666778
Q ss_pred CHhhHHHHHHhh
Q 013489 269 TLEDFDHSVQKV 280 (442)
Q Consensus 269 ~~~~~~~~~~~~ 280 (442)
+.+.-...++++
T Consensus 255 ~~~~A~~~~~~a 266 (327)
T 3cv0_A 255 QYDLAAKQLVRA 266 (327)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 766554444443
No 59
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.33 E-value=8.6e-13 Score=102.13 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=47.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDK-FTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~~fv~f~ 441 (442)
...++|||||||+++++++|+.+|+.|| |.+|+|+.++ .+|+++|||||+|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~ 69 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFE 69 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEEC
Confidence 4567999999999999999999999999 9999999997 59999999999996
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=100.78 Aligned_cols=53 Identities=28% Similarity=0.389 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 66 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 66 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEEC
Confidence 45679999999999999999999999999999999999899999999999995
No 61
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.33 E-value=1.8e-12 Score=102.22 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|+++|||||+|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 76 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 76 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999995
No 62
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.4e-12 Score=100.18 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=50.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFH 65 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEEC
Confidence 345679999999999999999999999999999999999889999999999995
No 63
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.2e-12 Score=99.64 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=48.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS-IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~ 65 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFA 65 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEEC
Confidence 34579999999999999999999999999987 899999 79999999999995
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=9.8e-13 Score=96.48 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=48.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++|||+|||+++++++|+.+|++||.|.+++++.++.+|+++|||||+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 50 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 50 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEc
Confidence 48999999999999999999999999999999999889999999999995
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=109.27 Aligned_cols=53 Identities=11% Similarity=0.282 Sum_probs=48.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||||||+++++++|+.+|+.|| .|.+|+|+.|+.+|+++|||||+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~ 107 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVA 107 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEEC
Confidence 3567999999999999999999999999 9999999999999999999999995
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=97.43 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=49.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||.++++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 56 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 56 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999995
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.2e-12 Score=100.58 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 67 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 67 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEEC
Confidence 45679999999999999999999999999999999999899999999999995
No 68
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.2e-12 Score=96.47 Aligned_cols=52 Identities=35% Similarity=0.478 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 66 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL 66 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEEC
Confidence 4569999999999999999999999999999999999889999999999995
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.32 E-value=3.7e-12 Score=101.31 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 75 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 75 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEEC
Confidence 45679999999999999999999999999999999999889999999999995
No 70
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=99.25 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS-SIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|++||.|. +|+|+.++.+|+++|||||+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~ 60 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFA 60 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeC
Confidence 3457999999999999999999999999999 9999999889999999999995
No 71
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=4e-12 Score=99.65 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=49.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHD-KFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.+ +.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~ 66 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI 66 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEES
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEEC
Confidence 44579999999999999999999999999999999998 789999999999995
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=3.4e-12 Score=98.54 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=50.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 58 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFM 58 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999996
No 73
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.31 E-value=2.3e-12 Score=96.47 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|++||.|.+|.++.++.+|+++|||||+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 57 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 57 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999995
No 74
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=3.5e-10 Score=109.43 Aligned_cols=221 Identities=9% Similarity=0.000 Sum_probs=164.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD-PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~-~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
+|...|+.+|..+|. +..+|..........|. ++.++..|+++|..+|.+..+|......+... +..+.+...|
T Consensus 115 ~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~-g~~~eAl~~~ 189 (382)
T 2h6f_A 115 RAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPSQELEFI 189 (382)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHH
T ss_pred HHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCHHHHHHHH
Confidence 466788889988876 88899999998889996 99999999999999999999999998877654 4567799999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHH
Q 013489 82 SRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (442)
Q Consensus 82 erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (442)
++|+...|.....|......+.. .+..+++...|++++...+.....+..+...+. ++.. ..+ .
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~-----~l~~--~~~------e-- 253 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS-----NTTG--YND------R-- 253 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HTTC--SCS------H--
T ss_pred HHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HhcC--cch------H--
Confidence 99999999999999987765554 677888999999999887775544433332221 1100 000 0
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc--------c
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGK-DMVSARGVWERLLKISGAMLEAWQSYISMEIELD--------H 232 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~-~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g--------~ 232 (442)
..++.++.++..++...+.....|.+.+.+....|. +.+.|.+.+.++ ...|++..++..++++....| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 112223333333333355566788888877766552 478899999887 778888888888888777653 3
Q ss_pred -HHHHHHHHHHH-Hh
Q 013489 233 -INEARSIYKRC-YS 245 (442)
Q Consensus 233 -~~~ar~i~~ra-l~ 245 (442)
++.|..+|+++ +.
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 58999999998 65
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.31 E-value=5.1e-12 Score=98.70 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=48.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.++ +|+++|||||+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 64 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFS 64 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeC
Confidence 346799999999999999999999999999999999996 8999999999995
No 76
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.31 E-value=2.9e-12 Score=95.42 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=48.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++|||+|||+++++++|+.+|++||.|.++.++.++.+|+++|||||+|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 51 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 51 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEES
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEEC
Confidence 58999999999999999999999999999999999899999999999995
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=96.95 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|+++|||||+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 55 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS 55 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEEC
Confidence 4569999999999999999999999999999999999889999999999995
No 78
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.3e-12 Score=101.38 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=48.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGV-SSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.| .+|+|+.|+ +|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~ 65 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFK 65 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECS
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEEC
Confidence 445799999999999999999999999999 899999997 9999999999995
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.31 E-value=1.7e-12 Score=94.61 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=47.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+|||+|||+++++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 49 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 49 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEEC
Confidence 5899999999999999999999999999999999889999999999995
No 80
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.30 E-value=1.7e-12 Score=100.89 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=49.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.||.|.+|+|+.++ +|+++|||||+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 58 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFY 58 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEEC
Confidence 345799999999999999999999999999999999997 9999999999995
No 81
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4e-12 Score=97.31 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 65 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 65 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999995
No 82
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.1e-12 Score=99.20 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=46.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+++|++||. .+|+|+.++ +|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~ 63 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFA 63 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEEC
Confidence 34579999999999999999999999994 599999996 9999999999996
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.30 E-value=4.3e-12 Score=102.89 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=50.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~ 96 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 96 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEEC
Confidence 44679999999999999999999999999999999999999999999999996
No 84
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=6.1e-12 Score=97.30 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=49.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++ +|+++|||||+|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 66 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYE 66 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEEC
Confidence 445799999999999999999999999999999999996 9999999999995
No 85
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=5.1e-12 Score=98.32 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=48.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.|| |.+|+|+.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~ 64 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFD 64 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEES
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEEC
Confidence 3457999999999999999999999997 999999999889999999999995
No 86
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.30 E-value=5.1e-12 Score=100.45 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=50.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 65 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999995
No 87
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.30 E-value=6.2e-10 Score=112.11 Aligned_cols=267 Identities=10% Similarity=-0.039 Sum_probs=164.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|...+......|+++.+...|++++..+|.+...|...+..+... +..+.+...|+
T Consensus 43 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~ 117 (537)
T 3fp2_A 43 EAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-GNFTDAMFDLS 117 (537)
T ss_dssp -CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 567788999988775 6778888888888899999999999999999999999999888776644 34455666664
Q ss_pred HHHHcCCCcHHHH-------------------------------------------------------------------
Q 013489 83 RATKNCPWVGELW------------------------------------------------------------------- 95 (442)
Q Consensus 83 rAl~~~p~s~~lW------------------------------------------------------------------- 95 (442)
++...|.....|
T Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp -HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred -HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 554444322211
Q ss_pred -HHHHHHHH--------HccCCHHHHHHHHHHHHhCChhhHHHH---HHHHHH-------------HHHHHHHHhhccCc
Q 013489 96 -VRSLLSLE--------RSRASEEEISTVFEKSLLCAFSTFEEY---LDLFLT-------------RIDGLRRRILFSGE 150 (442)
Q Consensus 96 -~~y~~~le--------~~~~~~~~~~~i~~~al~~~~~~~~~~---~~~~~~-------------~~~~l~rr~~~~~~ 150 (442)
..... +. ...+..+.+..+|++++...+...... ...+.. ....+.+-+.....
T Consensus 197 ~~~l~~-~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 197 SDALQR-LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHH-HHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 11110 10 001245678888888887655532211 111100 00011100000000
Q ss_pred cchhhhHHH---HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 013489 151 VEGVLDYSL---IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (442)
Q Consensus 151 ~~~~~~~~~---~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e 227 (442)
...+..... ....++.|+.++...+...+....+|...+.+....| +++.|...|++++...|+...+|...+.+.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000000000 0011255566655555445555678888898888888 899999999999999999889999999999
Q ss_pred HhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 228 IELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
...|+++.|..+|++++.. .++.+ .++..........|+.+.-...++++
T Consensus 355 ~~~g~~~~A~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK--FPTLP-EVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999973 33334 46666667777778876655555443
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.3e-12 Score=98.42 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=48.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCC-CCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.|| |.+|+|+.++.+ |+++|||||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~ 65 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFE 65 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEES
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEEC
Confidence 457999999999999999999999999 999999999887 999999999995
No 89
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.29 E-value=4.2e-12 Score=97.43 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=48.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||..+++++|+.+|+.||.|.+|+++.++.+|+++|||||+|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 52 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFR 52 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEES
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEEC
Confidence 469999999999999999999999999999999999889999999999995
No 90
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.29 E-value=2.4e-10 Score=102.35 Aligned_cols=201 Identities=9% Similarity=0.035 Sum_probs=148.9
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|+
T Consensus 41 ~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 115 (243)
T 2q7f_A 41 KAAEAFTKAIEENKE----DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFE 115 (243)
T ss_dssp -CCTTHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 355678888887665 677898889888899999999999999999999999999999887764 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+++...|....+|..++..+. ..+..+.+...|++++...+.....+..+-..+. .. .++.....
T Consensus 116 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~---------~~~~~A~~ 180 (243)
T 2q7f_A 116 KALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-----NE---------GMLDEALS 180 (243)
T ss_dssp HHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HH---------TCCHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-----Hc---------CCHHHHHH
Confidence 999999999999998887554 4788999999999999776554332222111110 00 22223333
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g 231 (442)
.|++++. ..+....+|...+.++...| +++.|..+|++++...|++..+|..+..+....|
T Consensus 181 ~~~~~~~-------~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 181 QFAAVTE-------QDPGHADAFYNAGVTYAYKE-NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHH-------HCTTCHHHHHHHHHHHHHTT-CTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHH-------hCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 4444433 23445568888999999999 9999999999999999999998888777765544
No 91
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.29 E-value=1.4e-12 Score=95.08 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=47.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+|||+|||+++++++|+.+|++||.|.+|.++.++.+|+++|||||+|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 49 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 49 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEEC
Confidence 6999999999999999999999999999999999899999999999995
No 92
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.29 E-value=4.8e-12 Score=95.62 Aligned_cols=51 Identities=27% Similarity=0.495 Sum_probs=49.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+++++++|+.+|++||.|.+++++.++.+|+++|||||+|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 56 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFS 56 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEEC
Confidence 469999999999999999999999999999999999889999999999995
No 93
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.1e-12 Score=98.70 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 62 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 62 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEEC
Confidence 4569999999999999999999999999999999999899999999999995
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.6e-12 Score=98.30 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSD-VGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+. ||.|.+|+|+.++ +|+++|||||+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~ 59 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFT 59 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEEC
Confidence 34579999999999999999999999 9999999999997 9999999999996
No 95
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.28 E-value=4.5e-12 Score=95.64 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=43.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||||||+++++++|+.+|++||.|.+|+|+.+ +||||||+|.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~ 56 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFA 56 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEEC
Confidence 3469999999999999999999999999999999885 7899999996
No 96
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.28 E-value=5.2e-12 Score=98.59 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKA------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+.+ ++++|+.+|++||.|.+|+|+ +.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~ 69 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYA 69 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEEC
Confidence 446799999999999 789999999999999999998 368999999999996
No 97
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.5e-12 Score=97.93 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 62 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 62 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999995
No 98
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=3.9e-12 Score=99.68 Aligned_cols=52 Identities=25% Similarity=0.196 Sum_probs=48.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||. |.+|+|+.++. |+++|||||+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~ 63 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEME 63 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEEC
Confidence 45679999999999999999999999998 89999999975 999999999995
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.3e-12 Score=99.31 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=47.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+++|++| .|.+|+|+.|+ +|+++|||||+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~ 64 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFL 64 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEEC
Confidence 445799999999999999999999999 89999999996 5999999999996
No 100
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=4.5e-12 Score=97.26 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSI-RILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.||.|.++ +|+.++.+|+++|||||+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~ 56 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 56 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEEC
Confidence 45799999999999999999999999999999 99999889999999999995
No 101
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5.2e-12 Score=101.85 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.++.++.+..+|+++|||||+|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~ 75 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 75 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEEC
Confidence 45679999999999999999999999999998666666689999999999996
No 102
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=5.7e-12 Score=100.55 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=48.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||. |.+|+|+.++. |+++|||||+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~ 69 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELE 69 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEEC
Confidence 45679999999999999999999999999 89999999965 999999999996
No 103
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=101.63 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+++++.++.+|+++|||||+|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 113 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 113 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEES
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEEC
Confidence 45679999999999999999999999999999999999899999999999995
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=8.3e-12 Score=98.88 Aligned_cols=53 Identities=32% Similarity=0.472 Sum_probs=49.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS--------SIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|. .|+|+.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~ 73 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 73 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEEC
Confidence 4567999999999999999999999999999 6999999899999999999995
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.26 E-value=7.1e-12 Score=101.38 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 72 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 72 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999996
No 106
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.9e-11 Score=96.90 Aligned_cols=52 Identities=31% Similarity=0.431 Sum_probs=49.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++ +|+++|||||+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~ 74 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARME 74 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEEC
Confidence 456799999999999999999999999999999999997 9999999999995
No 107
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.26 E-value=6.6e-12 Score=96.12 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=48.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+|+|+.++ +|+++|||||+|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 65 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFK 65 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEEC
Confidence 345799999999999999999999999999999999996 5999999999995
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=8.4e-12 Score=98.10 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||+|||.++++++|+.+|+.||.|.+|+++.++ ++++|||||+|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~ 77 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFE 77 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEEC
Confidence 4566799999999999999999999999999999999984 458999999996
No 109
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.25 E-value=5e-10 Score=102.24 Aligned_cols=114 Identities=10% Similarity=-0.086 Sum_probs=52.1
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH----HHHHHHHHHHhcchhhHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL----WLDYTQYLDKTLKVGNVVRD 79 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~l----W~~Y~~~l~~~~~~~~~~~~ 79 (442)
|...|+.+|...|. +...|...+......|+++.+...|++++. .|.++.+ |...+..+.. .+..+.+..
T Consensus 22 A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~ 95 (272)
T 3u4t_A 22 AIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQDSLAIQ 95 (272)
T ss_dssp HHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccHHHHHH
Confidence 34445555544443 233444444444445555555555555555 2322222 4444443332 223344555
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 80 VYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 80 v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
.|++++...|....+|......+. ..++.+.+...|++++...+
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCC
Confidence 555555555555555555444222 24445555555555554433
No 110
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.25 E-value=1.1e-11 Score=99.34 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=46.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVS--SIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+++|++| .|. +|+|+.|+. |+++|||||+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~ 92 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFA 92 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEEC
Confidence 345699999999999999999999999 566 999999965 999999999995
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.25 E-value=5.9e-12 Score=102.58 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=48.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGG---VSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++|+++|+++|++||. |.+|+|+.|+. |+++|||||+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~ 96 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELG 96 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEEC
Confidence 45679999999999999999999999999 89999999975 999999999995
No 112
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=95.90 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=48.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.+ +|+++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~ 63 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFS 63 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEEC
Confidence 45679999999999999999999999999999999998 8999999999995
No 113
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.3e-12 Score=99.72 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=47.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCC---CCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFT---GKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~~fv~f~ 441 (442)
...++|||||||+++++++|+.+|++||.|. +.++.++.+ |+++|||||+|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~ 60 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQ 60 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEEC
Confidence 3457999999999999999999999999999 888888777 899999999995
No 114
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.25 E-value=6.6e-12 Score=112.31 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=48.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVG--GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|+.|| .|.+|+|+.|+.||+++|||||+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~ 120 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVG 120 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEEC
Confidence 567999999999999999999999999 9999999999999999999999995
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.24 E-value=6.6e-12 Score=92.99 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=44.5
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKA------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++|||||||+.+ ++++|+.+|++||.|.+|+++ +.+|+++|||||+|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~ 55 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYA 55 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEES
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEEC
Confidence 599999999999 779999999999999999988 369999999999995
No 116
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.24 E-value=8.4e-12 Score=102.82 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||+|||.++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 92 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQ 92 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEEC
Confidence 345679999999999999999999999999999999999889999999999995
No 117
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=98.62 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=48.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|.|+.++ +|+++|||||+|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~ 56 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFE 56 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEEC
Confidence 345699999999999999999999999999999999996 9999999999995
No 118
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=8.9e-10 Score=109.99 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~-~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~ 100 (442)
+...|...+......|++ +.+...|+++|..+|.+...|...+..+... ++.+.+...|++|+...|. ...|..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-GDVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 667788888877788888 8888888888888888888888888766644 4567788888888888887 577777665
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHhCChhhH
Q 013489 101 SLERSR---------ASEEEISTVFEKSLLCAFSTF 127 (442)
Q Consensus 101 ~le~~~---------~~~~~~~~i~~~al~~~~~~~ 127 (442)
.+ ... +..+++...|++++...+...
T Consensus 179 ~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 213 (474)
T 4abn_A 179 VL-RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213 (474)
T ss_dssp HH-TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HH-HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence 33 334 566778888888887665543
No 119
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.5e-12 Score=100.30 Aligned_cols=52 Identities=37% Similarity=0.476 Sum_probs=49.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.||.|.+|+++.++.+|+++|||||+|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 58 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 58 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEEC
Confidence 4569999999999999999999999999999999999889999999999995
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=7.2e-12 Score=111.21 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=49.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||||||+++++++|+++|++||.|.+|+|++|+.||+++|||||+|.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~ 65 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 65 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeC
Confidence 469999999999999999999999999999999999999999999999995
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.6e-12 Score=96.09 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=43.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+++++++|+.+|++||.|.+|+|+.+ ||||||+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~ 60 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMN 60 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEEC
Confidence 34569999999999999999999999999999999875 699999995
No 122
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.1e-09 Score=109.36 Aligned_cols=249 Identities=8% Similarity=0.041 Sum_probs=179.3
Q ss_pred hhhHHHHHHhh-----c--CCCC---ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 013489 3 NARAHLEEQIS-----R--QDLS---DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK 72 (442)
Q Consensus 3 ~~r~~yE~~l~-----~--~~~~---~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~ 72 (442)
++...|+.++. . .|.. ++.....|...+......|+++.+..+|++++...|. ...|...+..+.. .+
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~-~~ 284 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD-RN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH-CC
Confidence 35566777776 3 3321 1456778988899888999999999999999999999 9999888887664 44
Q ss_pred hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
..+.+...|++++...|....+|...+..+.. .++.+.+...|++++...+.....+..+-..+. .
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~-------- 350 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAY-----R-------- 350 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-----T--------
T ss_pred CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-----H--------
Confidence 56778999999999999999999887775544 688899999999999876654332222211110 0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH------HHHHHHHH
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE------AWQSYISM 226 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~------~w~~~~~~ 226 (442)
..++......|++++.. .+....+|...+.+....| +++.|..+|++++...|+... +|...+..
T Consensus 351 -~~~~~~A~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 351 -ENKFDDCETLFSEAKRK-------FPEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp -TTCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHH-------cccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 12333344444444432 3344567888888888888 899999999999998877644 88888888
Q ss_pred HHh---cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHh
Q 013489 227 EIE---LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 227 e~~---~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~ 279 (442)
... .|+++.|...|++++.. .++.+ .++..........|+.+.-...+++
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKL--DPRSE-QAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHh--CcccH-HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888 89999999999999873 33333 4555666666677876654444443
No 123
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=6.4e-12 Score=96.81 Aligned_cols=53 Identities=28% Similarity=0.307 Sum_probs=48.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCC---CCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKF---TGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++. ||+++|||||+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~ 58 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYK 58 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEEC
Confidence 3457999999999999999999999999999999999876 6699999999995
No 124
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.24 E-value=6.6e-12 Score=99.74 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=45.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+|||||||+++++++|+++|+.||.|.+|+|+.++ +.++|||||+|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~ 53 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFE 53 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEEC
Confidence 3489999999999999999999999999999999984 458999999996
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.23 E-value=2.7e-12 Score=97.26 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++|||||||+++++++|+++|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 51 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQ 51 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEEC
Confidence 58999999999999999999999999999999999889999999999996
No 126
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.23 E-value=1.5e-11 Score=96.43 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=49.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|.|+.++ +|+++|||||+|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 78 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFE 78 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEEC
Confidence 456799999999999999999999999999999999996 9999999999995
No 127
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.1e-11 Score=97.48 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=49.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-eCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRIL-HDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||. |.+|.++ .++.+|+++|||||+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~ 60 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYE 60 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEES
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEec
Confidence 34679999999999999999999999998 9999998 88889999999999995
No 128
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.22 E-value=2.5e-09 Score=94.85 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHH
Q 013489 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLD 132 (442)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~ 132 (442)
.|.++..|......+... +..+.+...|++++...|.....|......+.. .+..+++...|++++...|.....+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYAL-GRYDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 377888999998877654 456779999999999999999999988775554 788999999999999887775544433
Q ss_pred HHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 133 LFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 133 ~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
+-..+...- ... .+.....+.+++|+..+..++...|.....|...+.+....| +++.|...|++++..
T Consensus 79 lg~~~~~~~----~~~------~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 79 LSEAYVALY----RQA------EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG-ERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHH----HTC------SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----hhh------hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 332221110 000 011122355677777776666656667788999999999999 999999999999999
Q ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCH
Q 013489 213 SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTL 270 (442)
Q Consensus 213 ~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~ 270 (442)
. ++..+|...+......|+++.|...|++++.. .++.+ .++......-...|+.
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~-~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDL-DLRVRYASALLLKGKA 201 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH-HHHHHHHHHHTC----
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHHccCH
Confidence 9 88999999999999999999999999999973 44444 3444444443444443
No 129
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=8.4e-12 Score=96.13 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=48.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|+++|||||+|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~ 65 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 65 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEEC
Confidence 4579999999999999999999999999999988888899999999999995
No 130
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=7.6e-12 Score=100.03 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=47.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGV----SSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+++|++||.| .+|+|+.+ .+|+++|||||+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~ 76 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFA 76 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEEC
Confidence 345699999999999999999999999975 69999999 59999999999995
No 131
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.22 E-value=2e-11 Score=92.83 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=47.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|++||.|.+|+++.+ +|+++|||||+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~ 56 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFE 56 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEEC
Confidence 34579999999999999999999999999999999984 8999999999995
No 132
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.22 E-value=1.6e-09 Score=98.91 Aligned_cols=199 Identities=8% Similarity=0.017 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc----HHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV----GELWVRS 98 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s----~~lW~~y 98 (442)
.+.+..++......|+++.+..+|++++..+|.+...|...+..... .++.+.+...|++++. .|.. ...|...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 34678888888899999999999999999999999999998886654 4566789999999999 4433 3447776
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCc
Q 013489 99 LLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNT 178 (442)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~ 178 (442)
...+. ..+..+.+...|++++...+.....+..+-..+ .....+++|+.++..++...
T Consensus 81 g~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~---------------------~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 81 GKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF---------------------YNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH---------------------HHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH---------------------HHccCHHHHHHHHHHHhhcC
Confidence 65444 478899999999999987665433332222111 11134677777777777666
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc---HHHHHHHHHHHHhc
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH---INEARSIYKRCYSK 246 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~---~~~ar~i~~ral~~ 246 (442)
+....+|...+......+ +++.|..+|++++..+|++...|...+......|+ ++.|...|++++..
T Consensus 139 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 666778888884444555 89999999999999999988888888887777777 88899999999974
No 133
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.22 E-value=1.5e-11 Score=104.48 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=49.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|+++|||||+|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 122 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 122 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEEC
Confidence 45679999999999999999999999999999999999899999999999995
No 134
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.9e-11 Score=93.16 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=42.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ ||||||+|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~ 59 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELA 59 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEEC
Confidence 4569999999999999999999999999999988865 799999995
No 135
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.5e-09 Score=97.74 Aligned_cols=207 Identities=11% Similarity=0.002 Sum_probs=155.6
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcchhh
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS-------SDLWLDYTQYLDKTLKVGN 75 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~-------~~lW~~Y~~~l~~~~~~~~ 75 (442)
+|...|+.++... . +...|...+......|+++.+..+|++++...|.+ ..+|...+..+.. .++.+
T Consensus 23 ~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 96 (258)
T 3uq3_A 23 EAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK-LGDLK 96 (258)
T ss_dssp HHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-cccHH
Confidence 4667788888776 3 56688888888889999999999999999988776 6788887776664 45667
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhh
Q 013489 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (442)
Q Consensus 76 ~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (442)
.+...|++++...|.. .++.. .+..+.+...|++++...+.....+..+-..+. .. .
T Consensus 97 ~A~~~~~~a~~~~~~~-~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~ 153 (258)
T 3uq3_A 97 KTIEYYQKSLTEHRTA-DILTK--------LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-----TK---------S 153 (258)
T ss_dssp HHHHHHHHHHHHCCCH-HHHHH--------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----HT---------T
T ss_pred HHHHHHHHHHhcCchh-HHHHH--------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-----Hh---------c
Confidence 8999999999988863 22221 244677888999999876654433332221111 10 2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINE 235 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ 235 (442)
++......|++++. ..+....+|...+.+....| +++.|...|++++...|+...+|...+......|+++.
T Consensus 154 ~~~~A~~~~~~a~~-------~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIK-------RAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHh-------cCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333344444443 34455678888999988889 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 013489 236 ARSIYKRCYSK 246 (442)
Q Consensus 236 ar~i~~ral~~ 246 (442)
|...|++++..
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999973
No 136
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.21 E-value=1.2e-09 Score=110.11 Aligned_cols=249 Identities=8% Similarity=0.044 Sum_probs=172.0
Q ss_pred hhhHHHHHHhhcCCCCChHh----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH
Q 013489 3 NARAHLEEQISRQDLSDSEK----FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~----~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~ 78 (442)
++...|+.++...|. ++.- ...|..........|+++.+..+|++++...|. ...|...+..+. ..++.+.+.
T Consensus 220 ~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHH
T ss_pred HHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHH
Confidence 355677777777765 1111 224555556667789999999999999999999 888888777655 345667899
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHH
Q 013489 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYS 158 (442)
Q Consensus 79 ~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~ 158 (442)
..|++++...|....+|......+. ..+..+.+...|++++...+.....+..+-..+. .. .++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-----~~---------g~~~ 361 (537)
T 3fp2_A 297 KFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-----KQ---------GKFT 361 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH-----HT---------TCHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----Hc---------CCHH
Confidence 9999999999999999999887554 4788999999999999876653332222221111 10 2333
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHH------HHHHHHHHHhc--
Q 013489 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEA------WQSYISMEIEL-- 230 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~------w~~~~~~e~~~-- 230 (442)
.....|++++. ..+....+|..++.+....| +++.|...|++++...|+.... +...+.+....
T Consensus 362 ~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 362 ESEAFFNETKL-------KFPTLPEVPTFFAEILTDRG-DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHHHHHHHHH-------HCTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-------hCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 33344444443 34445568888899988888 9999999999999987765432 34445555566
Q ss_pred --------ccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 231 --------DHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 231 --------g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
|+++.|..+|++++.. .++.+ .++..........|+.+.-...++++
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACEL--DPRSE-QAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHh--CCCCH-HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999973 33444 56666667777778876555444443
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.21 E-value=2.7e-11 Score=97.59 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=49.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||+|||+.+++++|+.+|+.||.|.+|+|+.++ +|+++|||||+|.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~ 84 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFE 84 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEEC
Confidence 3456799999999999999999999999999999999997 9999999999995
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=93.09 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=48.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCC-CcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK-SRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||.|.+++++.++.++. ++|||||+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~ 55 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFE 55 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEe
Confidence 356999999999999999999999999999999999977766 9999999995
No 139
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.20 E-value=2.2e-11 Score=102.38 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 89 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999995
No 140
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-11 Score=91.48 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.| .|.+|+|+.+ .+|+++|||||+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~ 58 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFS 58 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEEC
Confidence 445799999999999999999999999 8999999999 79999999999995
No 141
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.5e-11 Score=95.42 Aligned_cols=52 Identities=33% Similarity=0.495 Sum_probs=48.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.++ +|+++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~ 64 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFE 64 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEEC
Confidence 345799999999999999999999999999999999996 7999999999995
No 142
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.20 E-value=2.5e-11 Score=102.34 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=50.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.||.|.+|+|+.|+.+|+++|||||+|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~ 120 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 120 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999995
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.19 E-value=1.5e-11 Score=99.16 Aligned_cols=52 Identities=29% Similarity=0.530 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.++|||+|||+++++++|+.+|+.||.|.+|+++.++.+|+++|||||+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 86 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFA 86 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEEC
Confidence 3569999999999999999999999999999999999889999999999995
No 144
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.19 E-value=1.1e-11 Score=101.39 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~ 97 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 97 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEEC
Confidence 44579999999999999999999999999999999999889999999999995
No 145
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.19 E-value=9.7e-12 Score=95.15 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=48.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+.+|++||.|..+.++.++.+|+++|||||+|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~ 65 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 65 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEEC
Confidence 469999999999999999999999999999999998899999999999995
No 146
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=7.4e-11 Score=91.67 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|.+|+|+.++. .++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~ 63 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFE 63 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEEC
Confidence 4457999999999999999999999999999999999843 38999999995
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.18 E-value=1.5e-11 Score=100.48 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+++|++|| |.+|+|+.|+ +|+++|||||+|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~ 94 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFA 94 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeC
Confidence 3456999999999999999999999999 7799999996 5999999999995
No 148
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.1e-09 Score=106.10 Aligned_cols=220 Identities=11% Similarity=0.025 Sum_probs=168.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. ...|...+......|+++.+..+|++++..+|.+..+|...+..+... ++.+.+...|+
T Consensus 255 ~A~~~~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 328 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL-QNYDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 456778888877653 567888888888999999999999999999999999999998877644 46678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+++...|....+|...+..+ ...++.+.+..+|++++...+.....+..+-..+. +. .++.....
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-----~~---------~~~~~A~~ 393 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLA-YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT-----DK---------NDFDKALK 393 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHT-TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-----HT---------TCHHHHHH
T ss_pred HHHHhChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-----HC---------CCHHHHHH
Confidence 99999999989998877644 45788999999999999765543332222111110 11 34444455
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS---MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSI 239 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~---~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i 239 (442)
.|++++....... ........|...+.+... .| +++.|...|++++...|+...+|...+.+....|+++.|...
T Consensus 394 ~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 394 QYDLAIELENKLD-GIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHTSS-SCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5666655432110 000113477788888888 78 999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 013489 240 YKRCYS 245 (442)
Q Consensus 240 ~~ral~ 245 (442)
|++++.
T Consensus 472 ~~~a~~ 477 (514)
T 2gw1_A 472 FEESAD 477 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=1.3e-09 Score=113.92 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=141.8
Q ss_pred CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHH
Q 013489 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (442)
Q Consensus 18 ~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~ 97 (442)
+.|++.+.|.+........|+++.|...|++||..+|.+...|......+... +..+.+...|++|++..|.....|..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~-g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45678999999999999999999999999999999999999999999877754 55678999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 013489 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (442)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~ 177 (442)
....+.. .++.+++...|++|+...+.
T Consensus 83 Lg~~l~~-~g~~~~A~~~~~kAl~l~P~---------------------------------------------------- 109 (723)
T 4gyw_A 83 MGNTLKE-MQDVQGALQCYTRAIQINPA---------------------------------------------------- 109 (723)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHCTT----------------------------------------------------
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCCC----------------------------------------------------
Confidence 7765544 67788888888887754333
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 178 TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
....|...+.++...| +++.|...|+++++..|++...|..++......|+++.|...|++++.
T Consensus 110 ---~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 110 ---FADAHSNLASIHKDSG-NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ---CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 2234555566667778 899999999999999999999999999999889998888888888875
No 150
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.5e-11 Score=94.50 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=42.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||.|.+|+|+.+ ||||||+|.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~ 75 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMN 75 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEEC
Confidence 3569999999999999999999999999999999876 699999995
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.17 E-value=2.6e-11 Score=105.97 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=50.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|+.||.|.+|.++.++.+|+++|||||+|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 63 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeC
Confidence 45679999999999999999999999999999999999889999999999996
No 152
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=6.3e-11 Score=92.07 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+|+|+.++. .++|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~ 63 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFY 63 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEES
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEEC
Confidence 4567999999999999999999999999999999999843 36899999995
No 153
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.16 E-value=5.7e-11 Score=90.54 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=41.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+++|||+|||+++++++|+.+|++||.|.+|++++ +||||||+|.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~ 65 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFE 65 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEES
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEEC
Confidence 45999999999999999999999999999999875 3699999995
No 154
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.16 E-value=7.6e-09 Score=93.20 Aligned_cols=190 Identities=14% Similarity=0.053 Sum_probs=144.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|..++..+... ++.+.+...|+
T Consensus 55 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 129 (252)
T 2ho1_A 55 QAKVPLRKALEIDPS----SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ-KRYEEAYQRLL 129 (252)
T ss_dssp GGHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence 577889999988765 6778888888888999999999999999999999999999998877644 56678999999
Q ss_pred HHHH--cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHH
Q 013489 83 RATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (442)
Q Consensus 83 rAl~--~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (442)
+++. ..|....+|..++..+. ..+..+.+...|++++...+.....+..+-..+. .. .+
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-----~~---------g~---- 190 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-----KE---------RE---- 190 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-----HT---------TC----
T ss_pred HHHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-----Hc---------CC----
Confidence 9999 77888888888776444 4688999999999999766554332222211110 00 22
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHH
Q 013489 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 161 r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
++.|..++...+...+.....+...+.++...| +.+.|..++++++..+|++..++
T Consensus 191 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 191 ---YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE-DRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp ---HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSHHHH
T ss_pred ---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCHHHH
Confidence 344444454444444455567888888888888 99999999999999999877654
No 155
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.15 E-value=1.3e-08 Score=94.59 Aligned_cols=218 Identities=11% Similarity=0.010 Sum_probs=153.1
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 013489 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITD--FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRA 84 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~--~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erA 84 (442)
.|+.++......++.....+..++.+....|+.+.+...|++.+.. +|.++.+|...+..+... +..+.+..+|++
T Consensus 49 ~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~- 126 (291)
T 3mkr_A 49 KYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ- 126 (291)
T ss_dssp CHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT-
T ss_pred CHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC-
Confidence 4555554433234456778888888888888899999999999876 599999988887766644 456778888887
Q ss_pred HHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHH
Q 013489 85 TKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETF 164 (442)
Q Consensus 85 l~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~ 164 (442)
|.+..+|...+..+.. .+..+.+...|++++...+..... .+...++..+. . .+.+
T Consensus 127 ----~~~~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~--~l~~a~~~l~~-~----------------~~~~ 182 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLK-LDRLDLARKELKKMQDQDEDATLT--QLATAWVSLAA-G----------------GEKL 182 (291)
T ss_dssp ----CCSHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHH-C----------------TTHH
T ss_pred ----CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcCcHHH--HHHHHHHHHHh-C----------------chHH
Confidence 7888888887765444 688889999999998776553211 11112221110 0 0223
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHH-HHHHHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHIN-EARSIYKRC 243 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~-~ar~i~~ra 243 (442)
++|..++...+...+....+|...+.+....| +++.|...|++++..+|+++.+|..++.+....|+.. .+..+++++
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444444334556678888888888888 8999999999999999999999999998888888765 578899998
Q ss_pred HhcccCCCCh
Q 013489 244 YSKRFTGTGS 253 (442)
Q Consensus 244 l~~~~~~~~~ 253 (442)
+. +.++.|
T Consensus 262 ~~--~~P~~~ 269 (291)
T 3mkr_A 262 KD--AHRSHP 269 (291)
T ss_dssp HH--HCTTCH
T ss_pred HH--hCCCCh
Confidence 86 344544
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.4e-11 Score=90.69 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=43.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||.|.+|+|+.+ ++|||||+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~ 50 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFA 50 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEEC
Confidence 4579999999999999999999999999999999875 7899999995
No 157
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=5e-11 Score=91.33 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=45.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+ .+|++||.|.+|+|+.++.+ +|||||+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~ 60 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQME 60 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEEC
Confidence 455799999999999999999 99999999999999998655 899999995
No 158
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=1.2e-10 Score=90.27 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=41.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+.+|++||.|.+|.++.+ ||||||+|.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~ 59 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFE 59 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEEC
Confidence 469999999999999999999999999999998764 699999995
No 159
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=1.8e-08 Score=99.86 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=159.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHH---HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYE---QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNV 76 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e---~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~ 76 (442)
+|...|+.+|...|. +.+.|..++... ...+..+.+...|+++|..+|.+..+|..+...+... .+..+.
T Consensus 156 ~A~~~~~kal~~~p~----~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 156 RAKVCFEKALEKKPK----NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 467788888887765 666676666543 3456778888999999999999998887776443322 234456
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhh
Q 013489 77 VRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLD 156 (442)
Q Consensus 77 ~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~ 156 (442)
+...|++|+...|....+|......+ ...+..+.+...|++++...|.....+..+-..+........... ......
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~--~~~~~~ 308 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFY-RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR--ENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHH-HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH--HHHHHH
Confidence 88999999999999988888876644 447888999999999998777655544433333221111000000 000012
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH---HHHHHHHHHHH-hccc
Q 013489 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEI-ELDH 232 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~---~~w~~~~~~e~-~~g~ 232 (442)
.......++.|+.++..+....+.....+...+.+....| +++.|..+|++++...++.. .++..|..+.. ..|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD-QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 2233455667777776665545555557778888888888 99999999999999865543 35677776543 5689
Q ss_pred HHHHHHHHHHHHh
Q 013489 233 INEARSIYKRCYS 245 (442)
Q Consensus 233 ~~~ar~i~~ral~ 245 (442)
.+.|...|.+|+.
T Consensus 388 ~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 388 EDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999997
No 160
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.14 E-value=6e-11 Score=91.29 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=42.3
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.++|||+|||+ .+++++|+.+|++||.|.+|+|+.+ +|||||+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~ 60 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMA 60 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEES
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEEC
Confidence 356999999999 9999999999999999999999875 489999995
No 161
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.13 E-value=7.5e-12 Score=96.99 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|+.||.|.. .++.++.+|+++|||||+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~ 66 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFE 66 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEEC
Confidence 34679999999999999999999999999988 77777789999999999995
No 162
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.1e-10 Score=90.06 Aligned_cols=50 Identities=12% Similarity=0.305 Sum_probs=44.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+|.|+. +++++|||||+|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~ 69 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFE 69 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEEC
Confidence 4567999999999999999999999999999999855 4568999999995
No 163
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.1e-10 Score=91.12 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=41.9
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||++ +++++|+.+|++||.|.+|+|++ +||||||+|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~ 70 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEME 70 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEEC
Confidence 3579999999998 99999999999999999999874 4799999995
No 164
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=1e-10 Score=92.22 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=47.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeeCCCCC---CCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLR---RFFSDVGGVSSIRILHDKFTG---KSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+ .+|++||.|.+|.|+.++.+| +++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~ 71 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYI 71 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEES
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEEC
Confidence 345699999999999999999 999999999999999987654 56699999995
No 165
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=93.71 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=42.6
Q ss_pred CceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||||||+.+++++|+ .+|++||.|.+|.+. .+|+++|||||+|.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~ 80 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFA 80 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEEC
Confidence 5699999999999999876 699999999998774 37889999999995
No 166
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.09 E-value=2.6e-08 Score=87.55 Aligned_cols=202 Identities=10% Similarity=-0.011 Sum_probs=146.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHH
Q 013489 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (442)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~ 131 (442)
..|.++.+|...+..+... ++.+.+...|++++...|....+|...+..+. ..++.+.+..+|++++...+.....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRG-QDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 3567788888888776644 45678999999999999999999988777444 468899999999999987665433322
Q ss_pred HHHHHHHHHHHHHhhccCccchh-hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 132 DLFLTRIDGLRRRILFSGEVEGV-LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 132 ~~~~~~~~~l~rr~~~~~~~~~~-~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
.+-..+. .. .++......|++++. ....+....+|...+.+....| +++.|..+|++++
T Consensus 81 ~l~~~~~--------------~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 81 NYGWFLC--------------GRLNRPAESMAYFDKALA-----DPTYPTPYIANLNKGICSAKQG-QFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHH--------------TTTCCHHHHHHHHHHHHT-----STTCSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHH--------------HhcCcHHHHHHHHHHHHc-----CcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 2211111 01 123333344444433 0033445678888899988888 9999999999999
Q ss_pred HhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHhCCHhhHHHHHH
Q 013489 211 KISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTG-TGSEDICHAWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 211 ~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~-~~~~~i~~~~~~fE~~~G~~~~~~~~~~ 278 (442)
...|++..+|...+.+....|+++.|..+|++++.. .+ +.+ ..+.....+....|+.+.......
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--VEVLQA-DDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999999999999999999999973 33 444 455666777778888776554433
No 167
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.09 E-value=1.4e-08 Score=101.17 Aligned_cols=219 Identities=10% Similarity=-0.047 Sum_probs=156.4
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHH
Q 013489 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG-NVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFE 117 (442)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~-~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~ 117 (442)
.+.+...++.++...|.+..+|......+.. .++. +.+...|++|+...|.....|......+. ..++.+++...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 3455667777788889999999999987764 4566 88999999999999999999999877444 4789999999999
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHc--
Q 013489 118 KSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-- 195 (442)
Q Consensus 118 ~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-- 195 (442)
+++...+. ...+..+-..+. .... .+.......+++|+.++..++...+.....|..++.++...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~-----~~~~-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLR-----QLQT-------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHT-----TCCC-------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHH-----Hhcc-------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99988766 222222221111 1000 01112224455566666555554556667888888888777
Q ss_pred ------CCCHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 013489 196 ------GKDMVSARGVWERLLKISG---AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFERE 266 (442)
Q Consensus 196 ------~~~~~~ar~i~~~~l~~~~---~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~ 266 (442)
+ +++.|...|++++...| +...+|..++.+....|+++.|...|++|+. +.++.+. .+.........
T Consensus 229 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~-a~~~l~~~~~~ 304 (474)
T 4abn_A 229 NTGQNPK-ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPE-PQQREQQLLEF 304 (474)
T ss_dssp HTTCCHH-HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH-HHHHHHHHHHH
T ss_pred hhccccc-hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHHHH
Confidence 7 89999999999999999 8999999999999999999999999999997 3445442 33333333333
Q ss_pred hCCHhhHHHHHHh
Q 013489 267 YGTLEDFDHSVQK 279 (442)
Q Consensus 267 ~G~~~~~~~~~~~ 279 (442)
+..+..++..
T Consensus 305 ---lg~~~eAi~~ 314 (474)
T 4abn_A 305 ---LSRLTSLLES 314 (474)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 3344555543
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-11 Score=98.60 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=49.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSS--------IRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|+.||.|.+ |+|+.++.+|+++|||||+|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~ 65 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 65 (116)
Confidence 34569999999999999999999999999998 999999889999999999995
No 169
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.8e-11 Score=94.75 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=44.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|..+.+..+..+|+++|||||+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~ 75 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFP 75 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEEC
Confidence 34679999999999999999999999999954433333338999999999995
No 170
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=88.37 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=44.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|++||.| +++.+ .+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~ 61 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFA 61 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEEC
Confidence 446799999999999999999999999976 67777 79999999999995
No 171
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.07 E-value=1.7e-10 Score=98.71 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=49.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||+|||+.+++++|+.+|+.||.|.+|.|+.++ +|+++|||||+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~ 137 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFE 137 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeC
Confidence 3456799999999999999999999999999999999997 9999999999995
No 172
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.07 E-value=1.8e-10 Score=90.25 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=42.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||||||+++++++|+.+|++||.|.+|.++ +|||||+|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~ 73 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFE 73 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEEC
Confidence 3556799999999999999999999999999999988 699999995
No 173
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=2.4e-08 Score=84.75 Aligned_cols=167 Identities=10% Similarity=-0.022 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
....|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|++++...|....+|...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 455677777777888999999999999999999999999888876664 4566779999999999999988888887764
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhh
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~ 181 (442)
+.. .+..+.+...|++++...+. .
T Consensus 86 ~~~-~~~~~~A~~~~~~~~~~~~~-------------------------------------------------------~ 109 (186)
T 3as5_A 86 YVQ-VQKYDLAVPLLIKVAEANPI-------------------------------------------------------N 109 (186)
T ss_dssp HHH-HTCHHHHHHHHHHHHHHCTT-------------------------------------------------------C
T ss_pred HHH-hcCHHHHHHHHHHHHhcCcH-------------------------------------------------------h
Confidence 443 56667777777766543221 2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..+|...+.+....| +++.|..+|++++...|+...+|...+.+....|+++.|..+|++++..
T Consensus 110 ~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234555666667777 8999999999999999988889999999998999999999999999863
No 174
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=3.4e-10 Score=84.47 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=42.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||..+++++|+.+|++||.|.+|+++.+ +|||||+|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~ 56 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFA 56 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEES
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEEC
Confidence 34569999999999999999999999999999999874 699999995
No 175
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.05 E-value=1.3e-10 Score=85.27 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=41.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...||||||++.+++++|+.+|.+||+|.+++++. +||||||+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~ 51 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYT 51 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEES
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEEC
Confidence 44899999999999999999999999999999865 6899999995
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.05 E-value=2.2e-10 Score=99.64 Aligned_cols=50 Identities=14% Similarity=0.305 Sum_probs=47.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+++++++|+.+|++||.|.+|+|+++ .+|+++|||||+|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~kG~aFVeF~ 158 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LHKAFKGSIFVVFD 158 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC-TTCCEEEEEEEEES
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC-CCCCcccEEEEEEC
Confidence 469999999999999999999999999999999998 47999999999995
No 177
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=8.4e-11 Score=91.00 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||||||.++++++|+.+|+.||.|.+|+++ +++|||||+|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~ 71 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYD 71 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECS
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEEC
Confidence 45799999999999999999999999999999987 45799999995
No 178
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.03 E-value=3.5e-10 Score=86.66 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=41.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+ ++++++|+.+|+.||.|.+|++. +|||||+|.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~ 65 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFD 65 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEES
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEEC
Confidence 4567999999998 99999999999999999999883 799999995
No 179
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=3.9e-10 Score=87.37 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.|+ .|.++.++.+|+++|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~ 62 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFN 62 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECS
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEEC
Confidence 4457999999999999999999999774 7888888889999999999995
No 180
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=6.8e-08 Score=85.81 Aligned_cols=197 Identities=8% Similarity=-0.046 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP-VSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p-~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~ 100 (442)
+.+.|...+......|+++.+...|+++|...| .+...|...+.... ..++.+.+...|++|+...|....+|.....
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 346788888888889999999999999999998 88888888665544 4566788999999999999999999999877
Q ss_pred HHHHccCCHHHHHHHHHHHHhCChhhHHHHH---HHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 013489 101 SLERSRASEEEISTVFEKSLLCAFSTFEEYL---DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al~~~~~~~~~~~---~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~ 177 (442)
.+. ..++.+.+...|++++...+....... ..+.... .+......+++|+.++..++..
T Consensus 85 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-----------------~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG-----------------QKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-----------------HHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh-----------------HHHHHhccHHHHHHHHHHHHhc
Confidence 554 478899999999999987665332111 1111100 0001112234444544444444
Q ss_pred chh--hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 178 TDG--LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 178 ~~~--~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+. ....|...+.+.... +..+++++....+.....+. .......+.++.|...|++++.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~------~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNN------GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHH------HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHH------HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 444 445555555544332 23344444444332222111 1122334556788888888886
No 181
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.03 E-value=2.7e-08 Score=85.12 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=126.6
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|..+|. +...|...+......|+++.+...|++++...|.+...|.......... ++.+.+...+.
T Consensus 23 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~ 97 (184)
T 3vtx_A 23 GAIRAYKKVLKADPN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI-DEKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467889999988876 7889999999999999999999999999999999999999998877644 45677999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+++...|....+|......+.. .+..+++...|++++...+
T Consensus 98 ~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p-------------------------------------- 138 (184)
T 3vtx_A 98 RAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKP-------------------------------------- 138 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT--------------------------------------
T ss_pred HHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcc--------------------------------------
Confidence 9999999999999887764443 6777777777777665332
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
....+|...+.+....| +++.|...|+++++.+|+++..+
T Consensus 139 -----------------~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 139 -----------------GFIRAYQSIGLAYEGKG-LRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp -----------------TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTHHHHHHC
T ss_pred -----------------hhhhHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCccCHHHH
Confidence 22335666677777788 89999999999999999876543
No 182
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.02 E-value=3e-10 Score=111.28 Aligned_cols=52 Identities=29% Similarity=0.329 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.++.+|+++|||||+|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~ 152 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeec
Confidence 3569999999999999999999999999999999999889999999999996
No 183
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=5.8e-10 Score=87.34 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|++||.|..|.|+.+ |||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~ 58 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFV 58 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEEC
Confidence 44679999999999999999999999999999999886 89999996
No 184
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.02 E-value=4.9e-10 Score=88.85 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+.+|+.||.|.+|.++.+ ++++|||||+|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~ 55 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYE 55 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEEC
Confidence 469999999999999999999999999999999875 456999999995
No 185
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.4e-10 Score=85.68 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=41.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+.+|+.||.|. ++++. ++++|||||+|.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~ 64 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYP 64 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECS
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEEC
Confidence 356999999999999999999999999996 66665 368899999995
No 186
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=6.8e-10 Score=85.44 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=42.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+.+++++|+.+|++||.|.+|+++.+ +|||||+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~ 59 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLE 59 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEEC
Confidence 34579999999999999999999999999999998854 699999995
No 187
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.01 E-value=5.7e-08 Score=90.59 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhc
Q 013489 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIEL 230 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~ 230 (442)
+......+++++...... ........++...+.+....| +++.|..++++++...+.. ..++...+.+....
T Consensus 199 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 334444455555443321 112223457777888888888 8999999999999875443 55778888888889
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 231 DHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 231 g~~~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
|+++.|...|++++...-....+.. ++..........|+.+.-....+++
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999864211122222 3334444455556655544444443
No 188
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.01 E-value=1.4e-10 Score=89.04 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=44.5
Q ss_pred CCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+ .+|++||.|.+|.++. +|+++|||||+|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~ 59 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFK 59 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeC
Confidence 35699999999999999999 9999999999998873 6888999999995
No 189
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.01 E-value=4.4e-08 Score=94.99 Aligned_cols=258 Identities=12% Similarity=-0.000 Sum_probs=139.7
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcchhhHHHHHHHHHHHcC------CC
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSD----LWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PW 90 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~----lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~------p~ 90 (442)
.....+...+......|+++.+..+|++++...|.+.. +|...+..+.. .++.+.+...|++|+..+ |.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34455556666666677777777777777777777663 45444444432 234556777777777652 33
Q ss_pred cHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------hhhHHHHHH---H-----------------------HHHHH
Q 013489 91 VGELWVRSLLSLERSRASEEEISTVFEKSLLCA------FSTFEEYLD---L-----------------------FLTRI 138 (442)
Q Consensus 91 s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~------~~~~~~~~~---~-----------------------~~~~~ 138 (442)
...+|......+ ...+..+.+...|++++... +.....+.. + +...+
T Consensus 125 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 125 EAKSSGNLGNTL-KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 344555544433 33566677777777766431 111111110 0 10001
Q ss_pred HHHHHHhhcc---Cc--------------cchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHH
Q 013489 139 DGLRRRILFS---GE--------------VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVS 201 (442)
Q Consensus 139 ~~l~rr~~~~---~~--------------~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ 201 (442)
.++.+-+... .. .....++......|++++...... ........++...+.++...| +++.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~ 281 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHIFLG-QFED 281 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTTT-CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHCc-CHHH
Confidence 1110000000 00 000122333333444444433221 111222346777888888888 9999
Q ss_pred HHHHHHHHHHhchhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH---HHHHHHHHHHHHhCCHhh
Q 013489 202 ARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE---DICHAWLRFEREYGTLED 272 (442)
Q Consensus 202 ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~---~i~~~~~~fE~~~G~~~~ 272 (442)
|...|++++...+.. ..+|...+.+....|+++.|..+|++++...-....+. .++..........|+.+.
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 999999999885532 56788888888889999999999999986421111222 234444455556677655
Q ss_pred HHHHHHhhch
Q 013489 273 FDHSVQKVTP 282 (442)
Q Consensus 273 ~~~~~~~~~~ 282 (442)
-.....++..
T Consensus 362 A~~~~~~al~ 371 (411)
T 4a1s_A 362 ALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5545544433
No 190
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.00 E-value=2.9e-08 Score=90.35 Aligned_cols=205 Identities=12% Similarity=0.028 Sum_probs=140.7
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.++...|. +...|...+......|+++.+..+|++++..+|.+..+|...+..+.. .++.+.+...|+
T Consensus 61 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 135 (275)
T 1xnf_A 61 LARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 467789999988775 677899999999999999999999999999999999999999987764 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRE 162 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~ 162 (442)
+++...|.....+..... .. ..++.+.+...|.+++...+.....+. +.. .. ... .+.
T Consensus 136 ~a~~~~~~~~~~~~~~~~-~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~----~~----~~~------~~~----- 193 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYL-AE-QKLDEKQAKEVLKQHFEKSDKEQWGWN-IVE----FY----LGN------ISE----- 193 (275)
T ss_dssp HHHHHCTTCHHHHHHHHH-HH-HHHCHHHHHHHHHHHHHHSCCCSTHHH-HHH----HH----TTS------SCH-----
T ss_pred HHHHhCCCChHHHHHHHH-HH-HhcCHHHHHHHHHHHHhcCCcchHHHH-HHH----HH----HHh------cCH-----
Confidence 999999988754443332 22 247788999999988865444211111 000 00 000 111
Q ss_pred HHHHHHHHHhhhhcCch----hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTD----GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARS 238 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~----~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~ 238 (442)
+.|+..+...+...+ ....+|...+.++...| +++.|...|++++..+|++.. .+.......|+++.|..
T Consensus 194 --~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 194 --QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-DLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQD 267 (275)
T ss_dssp --HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHH
Confidence 223333333332222 23568888999999999 999999999999999886543 33444445566666665
Q ss_pred HH
Q 013489 239 IY 240 (442)
Q Consensus 239 i~ 240 (442)
.|
T Consensus 268 ~~ 269 (275)
T 1xnf_A 268 DL 269 (275)
T ss_dssp --
T ss_pred HH
Confidence 55
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.99 E-value=6.1e-10 Score=97.17 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=49.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+++|+.||.|..|+++.++.+|+++|||||+|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~ 154 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEEC
Confidence 3479999999999999999999999999999999999889999999999996
No 192
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.99 E-value=8.8e-10 Score=93.25 Aligned_cols=53 Identities=28% Similarity=0.339 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.++.++.++.+|+++|||||+|.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 137 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 137 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeC
Confidence 44679999999999999999999999999999999999889999999999995
No 193
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.99 E-value=1.9e-10 Score=88.04 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|+.||.|..+ ..+|+++|||||+|.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~ 61 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFK 61 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEEC
Confidence 456799999999999999999999999987665 368999999999995
No 194
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=9.2e-10 Score=83.08 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=41.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|++||.|.+|+++ +|||||+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~ 50 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE 50 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEES
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEEC
Confidence 345799999999999999999999999999999987 589999995
No 195
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.97 E-value=6.3e-10 Score=92.75 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=44.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+++++++|+.+|++||.|.+|+++.+ ++|||||+|.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~ 118 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFE 118 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEEC
Confidence 45679999999999999999999999999999999887 5899999995
No 196
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.97 E-value=1.3e-07 Score=87.50 Aligned_cols=213 Identities=10% Similarity=0.045 Sum_probs=145.1
Q ss_pred ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC--
Q 013489 19 DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAIT--------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC-- 88 (442)
Q Consensus 19 ~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~--------~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~-- 88 (442)
++.....|...+......|+++.+..+|++++. ..|....+|...+..+.. .+..+.+...|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 566788899999988999999999999999998 356667777777776554 456677999999999864
Q ss_pred ------CCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHHHHHhhccCccchhhhH
Q 013489 89 ------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA-----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDY 157 (442)
Q Consensus 89 ------p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~-----~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~ 157 (442)
|....+|..... +....++.+.+...|++++... ..... ....+......+ .. ..++
T Consensus 102 ~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~-~~---------~~~~ 169 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAV-LYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLNNLALLC-QN---------QGKY 169 (311)
T ss_dssp HHCTTCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH-HT---------TTCH
T ss_pred HhCCCChHHHHHHHHHHH-HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHH-HH---------cCCH
Confidence 444456666555 4445788999999999998642 11111 111111111011 01 1345
Q ss_pred HHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------
Q 013489 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS----------------------- 213 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~----------------------- 213 (442)
......|++++......... .+....++...+.+....| +++.|..+|++++...
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 56667777777765544322 3445678888899999999 9999999999999753
Q ss_pred --------------------------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 214 --------------------------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 214 --------------------------~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
|....+|...+.+....|+++.|..+|++|+.
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445666666666666777777777777664
No 197
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.97 E-value=3.9e-10 Score=88.30 Aligned_cols=48 Identities=6% Similarity=0.067 Sum_probs=42.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+++|++|| .|..+.++.+ +++|||||+|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~ 75 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFP 75 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEEC
Confidence 357999999999999999999999999 8999988643 48999999995
No 198
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.97 E-value=1.2e-07 Score=91.27 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhc
Q 013489 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIEL 230 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~ 230 (442)
+......|++++...... ........++...+.+....| +++.|..+|++++...+.. ..+|...+.+....
T Consensus 203 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence 334444555555544321 112223457777888888888 9999999999999885543 56788888888899
Q ss_pred ccHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHhhHHHHHHhhc
Q 013489 231 DHINEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 231 g~~~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
|+++.|...|++++...-....+.. ++......-...|+.+.-.....++.
T Consensus 281 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999864212222222 33344444455677655544444443
No 199
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=1.6e-09 Score=82.92 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=42.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||.|.+|.++.+ +|||||+|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~ 61 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYE 61 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEEC
Confidence 3469999999999999999999999999999998764 689999995
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.96 E-value=1.1e-09 Score=93.40 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=49.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeC
Confidence 579999999999999999999999999999999999889999999999995
No 201
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.96 E-value=3.8e-07 Score=88.31 Aligned_cols=210 Identities=11% Similarity=0.012 Sum_probs=123.2
Q ss_pred cchhhHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC------ChhhHHHHHHHHHH----
Q 013489 71 LKVGNVVRDVYSRATKNCPWVG----ELWVRSLLSLERSRASEEEISTVFEKSLLC------AFSTFEEYLDLFLT---- 136 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~s~----~lW~~y~~~le~~~~~~~~~~~i~~~al~~------~~~~~~~~~~~~~~---- 136 (442)
.++.+.+...|++|+...|... .+|......+. ..++.+.+...|++++.. .+.....+..+-..
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 3566789999999999999875 35666555333 468899999999998864 12111111111110
Q ss_pred -----HHHHHHHHhhc----cC---ccc---hhhhHHHHHHH-----------------HHHHHHHHhhhhc------Cc
Q 013489 137 -----RIDGLRRRILF----SG---EVE---GVLDYSLIRET-----------------FQRASDYLSEQMK------NT 178 (442)
Q Consensus 137 -----~~~~l~rr~~~----~~---~~~---~~~~~~~~r~~-----------------~~~a~~~l~~~~~------~~ 178 (442)
...++.+-+.. .. ... ....+...... ++.|+.++..++. ..
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 01111100000 00 000 00011111222 5555555544332 12
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH------HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML------EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~------~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (442)
+....++...+.+....| +++.|...|++++...+... .+|...+.+....|+++.|...|++++...-....
T Consensus 220 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 334457777888888888 99999999999999865432 37888888888999999999999999974211122
Q ss_pred h---HHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 253 S---EDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 253 ~---~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
+ ..++..........|+.+.-...++++..
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 23444445555666776665555555443
No 202
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=5.5e-10 Score=86.33 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=42.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++|||+|||+++++++|+.+|++||.|.+|.++.+ ++|||||+|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~ 45 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFE 45 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEEC
Confidence 48999999999999999999999999999999887 7899999995
No 203
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.95 E-value=8.5e-10 Score=97.83 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=47.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+++++++|+.+|+.||.|.+|+++.++.+|+++|||||+|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 78 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYE 78 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeC
Confidence 469999999999999999999999999999999999889999999999995
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.94 E-value=2.9e-09 Score=92.94 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=50.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+|+++.++.+|+++|||||+|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999995
No 205
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.93 E-value=2.8e-09 Score=83.72 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=41.2
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+. +++++|+.+|++||.|.+|.+ ++|||||+|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~ 70 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYS 70 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEEC
Confidence 34579999999999 999999999999999999988 5799999995
No 206
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=5.7e-10 Score=87.77 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=42.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.++|||+|||+.+++++|+.+|++||.|.+|.|+. ++|||||+|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~ 54 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFL 54 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeC
Confidence 456999999999999999999999999999998874 5799999995
No 207
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.93 E-value=6.4e-10 Score=94.34 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=48.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 137 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 137 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEES
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEEC
Confidence 358999999999999999999999999999999999889999999999995
No 208
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.5e-09 Score=81.34 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=41.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||||||+++++++|+.+|+.||.|.+| +.++.+|+ ||||+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~ 53 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMG 53 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEEC
Confidence 34699999999999999999999999999987 66666776 9999995
No 209
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.1e-09 Score=85.90 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||..+++++|+.+|+.||.|.+|+|+.+ +|||||+|.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~ 69 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 69 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEEC
Confidence 4569999999999999999999999999999999886 799999995
No 210
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.7e-09 Score=82.72 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=40.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+ .+++++|+.+|++||.|.+|.+. +|||||+|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~ 53 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFD 53 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEES
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEEC
Confidence 3456999999999 99999999999999999999984 699999995
No 211
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=81.08 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|.+|.+++ |||||+|.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~ 52 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHME 52 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEEC
Confidence 4457999999999999999999999999999999873 49999995
No 212
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.91 E-value=2.4e-10 Score=94.52 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEE--EeeC---CCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIR--ILHD---KFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~--~~~~---~~~g~~~g~~fv~f~ 441 (442)
...++|||||||+.+++++|+.+|+.||.|..+. ++.+ ..+|+++|||||+|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~ 100 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLP 100 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeC
Confidence 3456999999999999999999999999988751 1111 258999999999995
No 213
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.91 E-value=4.1e-07 Score=80.62 Aligned_cols=190 Identities=8% Similarity=-0.017 Sum_probs=131.9
Q ss_pred hhhHHHHHHhhcCC-CCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Q 013489 3 NARAHLEEQISRQD-LSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVY 81 (442)
Q Consensus 3 ~~r~~yE~~l~~~~-~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~ 81 (442)
+|...|+.+|...| . +...|...+......|+++.+...|++++..+|.+..+|...+..+.. .++.+.+...|
T Consensus 25 ~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~ 99 (228)
T 4i17_A 25 VAFEKYSEYLKLTNNQ----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYIATL 99 (228)
T ss_dssp HHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHHHHH
Confidence 46778899998876 4 455676677777889999999999999999999999999999987764 45667899999
Q ss_pred HHHHHcCCCcHHH-------HHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 82 SRATKNCPWVGEL-------WVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 82 erAl~~~p~s~~l-------W~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
++++...|.+..+ |..... +....+..+.+...|++++...+. ....+..+-..+..
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~------------- 165 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQ-KFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN------------- 165 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhH-HHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-------------
Confidence 9999999998844 555444 334468899999999999998776 44444333322210
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISME 227 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e 227 (442)
.-...++++..... .. ...+........+ .++.|...|+++++..|++..++.....+.
T Consensus 166 ------~~~~~~~~a~~~~~-------~~--~~~~~~~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 166 ------NGADVLRKATPLAS-------SN--KEKYASEKAKADA-AFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp ------HHHHHHHHHGGGTT-------TC--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhccc-------CC--HHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 00112233322211 11 1112222333444 688999999999999999887766555543
No 214
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.90 E-value=7.4e-10 Score=87.75 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=41.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ |||||+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~ 59 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFV 59 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEEC
Confidence 34679999999999999999999999999999999876 89999996
No 215
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.90 E-value=2.8e-09 Score=90.41 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=49.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||..+++++|+.+|++||.|..++++.++.+|+++|||||+|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 139 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 139 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEEC
Confidence 4569999999999999999999999999999999999889999999999995
No 216
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.90 E-value=1.1e-06 Score=81.82 Aligned_cols=253 Identities=10% Similarity=-0.061 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcC------CCcH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWVG 92 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~------p~s~ 92 (442)
...|...+......|+++.+..+|++++...|.++ .+|...+.... ..++.+.+...|++|+... |...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34566666666788999999999999999999985 45555555444 3456678999999998763 2234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhc---c-C-------ccchhhhHHH
Q 013489 93 ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILF---S-G-------EVEGVLDYSL 159 (442)
Q Consensus 93 ~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~---~-~-------~~~~~~~~~~ 159 (442)
.+|......+ ...+..+.+...|++++..... ........+.... .+...... . . ..+....+..
T Consensus 84 ~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 84 KASGNLGNTL-KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG-NVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 5666655533 3468899999999999864322 1111111111111 11001100 0 0 0000011333
Q ss_pred HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhcccH
Q 013489 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHI 233 (442)
Q Consensus 160 ~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~g~~ 233 (442)
....+++++...... ...+....++...+.+....| +++.|..++++++...+.. ..+|...+.+....|++
T Consensus 162 A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 162 AVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 344444444443222 122334557777888888889 9999999999999874432 23788888888889999
Q ss_pred HHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 234 NEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 234 ~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
+.|..+|++++........+.. ++..........|+.+.-...+.++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999864222222322 3334444555567766554444444
No 217
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.89 E-value=1.8e-07 Score=92.48 Aligned_cols=191 Identities=15% Similarity=0.068 Sum_probs=128.7
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---ccCC
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK--TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER---SRAS 108 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~--~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~---~~~~ 108 (442)
...+++++|...|+++|..+|.++..|..+...... ..+..+.+...|++|+...|....+|..+...+.. ..+.
T Consensus 149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 344678999999999999999999999988765442 22344568899999999999998888776543332 2345
Q ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHH
Q 013489 109 EEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYW 188 (442)
Q Consensus 109 ~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~ 188 (442)
.+.+..+|++++...+.....+..+-..+. .. .++......|++|+.. .|....++...
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-----~~---------~~~~~A~~~~~~al~~-------~p~~~~~~~~l 287 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYR-----RK---------DEPDKAIELLKKALEY-------IPNNAYLHCQI 287 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHHH-------STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHH-----Hc---------CchHHHHHHHHHHHHh-------CCChHHHHHHH
Confidence 678999999999876664443332221111 11 2333333444444432 33333333333
Q ss_pred HHHHH-------------------HcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 189 AHLEQ-------------------SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 189 a~~e~-------------------~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
+.++. ... ..+.|...|++++..+|.....|...+.+....|+++.|..+|++++..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLE-LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHH-HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 32221 112 3568888999999999999999999999999999999999999999974
No 218
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=2.1e-09 Score=81.11 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|++||.|.+|+++. |||||+|.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~ 51 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHME 51 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEEC
Confidence 3456999999999999999999999999999999873 49999996
No 219
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.4e-09 Score=84.92 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=40.2
Q ss_pred CceEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFL--SNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+||| ||||+++++++|+++|++||.|.+|.|+.+ ||||||+|.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~ 71 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYR 71 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEES
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEEC
Confidence 458999 779999999999999999999999987642 799999995
No 220
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.88 E-value=2.5e-09 Score=90.48 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=49.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||..+++++|+.+|++||.|.+++++.++.+|+++|||||+|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 138 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 138 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeC
Confidence 3468999999999999999999999999999999999889999999999995
No 221
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.88 E-value=1.9e-09 Score=92.12 Aligned_cols=51 Identities=31% Similarity=0.431 Sum_probs=47.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+++|++||.|.+++++.+ .+|+++|||||+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFT 144 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEES
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEEC
Confidence 4569999999999999999999999999999999999 47999999999995
No 222
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.87 E-value=2.9e-09 Score=94.34 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=48.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||..+++++|+++|+.||.|.+|+++.++.+|+++|||||+|.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 175 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYE 175 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEec
Confidence 459999999999999999999999999999999999889999999999995
No 223
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=6.4e-09 Score=79.92 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=40.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDV--GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++| |.|.+|.++ +|||||+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~ 59 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFS 59 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEES
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeC
Confidence 345799999999999999999999999 899988764 579999995
No 224
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.86 E-value=1e-06 Score=84.68 Aligned_cols=255 Identities=9% Similarity=-0.063 Sum_probs=154.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHcC------CCc
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----DLWLDYTQYLDKTLKVGNVVRDVYSRATKNC------PWV 91 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~----~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~------p~s 91 (442)
....|...+......|+++.+..+|++++...|.++ .+|...+.... ..++.+.+...|++|+... |..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344666777777889999999999999999999885 45666665544 3456678999999998763 223
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHH--HHHHHHHHh---hccCccc-----hhhhHHH
Q 013489 92 GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLT--RIDGLRRRI---LFSGEVE-----GVLDYSL 159 (442)
Q Consensus 92 ~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~--~~~~l~rr~---~~~~~~~-----~~~~~~~ 159 (442)
..+|...... ....++.+.+...|++++..... ........+.. .+-...-+. .....+. ....+..
T Consensus 87 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNT-LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3456555543 33468899999999999864332 11111111111 110010000 0000000 0011333
Q ss_pred HHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhcccH
Q 013489 160 IRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHI 233 (442)
Q Consensus 160 ~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~g~~ 233 (442)
....+.+++.+.... ...+....++...+.+....| +++.|...|++++...+.. ..+|...+.+....|++
T Consensus 166 A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT-BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 444445555443322 122334567788888988899 9999999999999884432 23788888888889999
Q ss_pred HHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 234 NEARSIYKRCYSKRFTGTGSED---ICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 234 ~~ar~i~~ral~~~~~~~~~~~---i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
+.|..+|++++...-....+.. ++..........|+.+.-...+.++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999999964212222222 3333344445556665544444443
No 225
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.85 E-value=2.2e-09 Score=80.57 Aligned_cols=46 Identities=4% Similarity=0.122 Sum_probs=41.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++| .|.++++. +++|||||+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~ 48 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLL 48 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEEC
Confidence 345799999999999999999999999 99999884 57899999995
No 226
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.85 E-value=3.4e-09 Score=82.12 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||.|.+|+++ +|||||+|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~ 53 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFD 53 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeC
Confidence 35699999999999999999999999999999886 469999995
No 227
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.84 E-value=2.6e-09 Score=79.93 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDV----G-------GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+.+|++| | .|.+++++.+ +|||||+|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~ 61 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFR 61 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcC
Confidence 345799999999999999999999999 8 8999988765 799999995
No 228
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=1.8e-08 Score=85.93 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
+.+...+......|+++.+..+|++++..+|.++..|..++..+... +..+.+...|++++...| ...++........
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 34556666666788999999999999999999999999888877644 456778888998888888 5544332211000
Q ss_pred HccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHH
Q 013489 104 RSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (442)
Q Consensus 104 ~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~ 183 (442)
........+. ..|++++.. .|....
T Consensus 85 ~~~~~~~~a~------------------------------------------------~~~~~al~~-------~P~~~~ 109 (176)
T 2r5s_A 85 HQQAAESPEL------------------------------------------------KRLEQELAA-------NPDNFE 109 (176)
T ss_dssp HHHHTSCHHH------------------------------------------------HHHHHHHHH-------STTCHH
T ss_pred HhhcccchHH------------------------------------------------HHHHHHHHh-------CCCCHH
Confidence 0000000011 223333332 344556
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH--HHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAM--LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~--~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.+..++.+....| +++.|...|++++...|+. ...|..++.+....|+.+.|...|.+++..
T Consensus 110 ~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 110 LACELAVQYNQVG-RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 7888888888888 9999999999999998875 558999999999999999999999999863
No 229
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=1.1e-06 Score=79.60 Aligned_cols=186 Identities=11% Similarity=-0.032 Sum_probs=130.0
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc---HHH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GEL 94 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s---~~l 94 (442)
.+.+.+...+......|+++.+..+|++++..+|.+ ...|...+..+.. .++.+.+...|++++...|.+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677777777788999999999999999999998 7788777766554 456678999999999998854 344
Q ss_pred HHHHHHHHHH-------ccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHH
Q 013489 95 WVRSLLSLER-------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRA 167 (442)
Q Consensus 95 W~~y~~~le~-------~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a 167 (442)
|......+.. ..+..+.+...|++++...|........ ..++ ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a--~~~~--------------------------~~~ 143 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA--TQKI--------------------------REL 143 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH--HHHH--------------------------HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH--HHHH--------------------------HHH
Confidence 4444443322 0466788888999988755542110000 0000 000
Q ss_pred HHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh---HHHHHHHHHHHHHhc----------ccHH
Q 013489 168 SDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA---MLEAWQSYISMEIEL----------DHIN 234 (442)
Q Consensus 168 ~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~---~~~~w~~~~~~e~~~----------g~~~ 234 (442)
.. .....+...+.+....| +++.|...|++++..+|+ ....|...+...... |+++
T Consensus 144 ~~----------~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 144 RA----------KLARKQYEAARLYERRE-LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp HH----------HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 00 01113455677777888 999999999999999887 456777777766554 8899
Q ss_pred HHHHHHHHHHhc
Q 013489 235 EARSIYKRCYSK 246 (442)
Q Consensus 235 ~ar~i~~ral~~ 246 (442)
.|...|++++..
T Consensus 213 ~A~~~~~~~~~~ 224 (261)
T 3qky_A 213 RAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999973
No 230
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=2.5e-06 Score=77.81 Aligned_cols=198 Identities=12% Similarity=-0.003 Sum_probs=136.5
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhHHHHHHHHHHHcCCCcHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWV 96 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~v~erAl~~~p~s~~lW~ 96 (442)
+++...|..........|+++.+...|++++. |.++..|......+... .++.+.+...|++|+..- ....|.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 34677888888888889999999999999999 77888888887766640 456678999999999864 566777
Q ss_pred HHHHHHHH---ccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhh
Q 013489 97 RSLLSLER---SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (442)
Q Consensus 97 ~y~~~le~---~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~ 173 (442)
.....+.. ..++.+.+...|++++..+.. ..+..+-..+. .- ... ..++......|++|+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~-----~~---~~~--~~~~~~A~~~~~~a~~---- 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYH-----DG---KVV--TRDFKKAVEYFTKACD---- 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHH-----HC---SSS--CCCHHHHHHHHHHHHH----
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc--cHHHHHHHHHH-----cC---CCc--ccCHHHHHHHHHHHHh----
Confidence 65553332 157889999999999987532 22222221111 10 000 1233344444555444
Q ss_pred hhcCchhhHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHh
Q 013489 174 QMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARSIYKRCYS 245 (442)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~----~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~----~g~~~~ar~i~~ral~ 245 (442)
..+ ...+..++.+... .+ +++.|...|++++... +...+..+..+... .++++.|...|++++.
T Consensus 143 ---~~~--~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 143 ---LND--GDGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp ---TTC--HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred ---cCc--HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 222 3356666777666 66 9999999999999873 35667777777777 8899999999999997
No 231
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=4.6e-07 Score=84.36 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTL-KVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~-~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~-~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
.+..-+.|+.-....|.. +++..+++.+|..+|.+..+|..-...+.... ...+.....++.++...|.+..+|....
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~ 110 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 344444444444444433 46666666666666666666666555554333 2445566666666666666666666655
Q ss_pred HHH----HHcc--CCHHHHHHHHHHHHhCChh
Q 013489 100 LSL----ERSR--ASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 100 ~~l----e~~~--~~~~~~~~i~~~al~~~~~ 125 (442)
..+ .... +..++....+++++...+.
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 544 2211 3344455566666655444
No 232
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.81 E-value=4.7e-09 Score=87.23 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+|||+||++.+++++|+.+|++||.|.+|.|+.+ +++|||||+|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~ 92 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYA 92 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEES
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEEC
Confidence 3458999999999999999999999999999998754 25799999995
No 233
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.1e-08 Score=78.30 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|| ++++++|+.+|++||.|.+|.|. +++|||||+|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~ 57 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYE 57 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEES
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEEC
Confidence 34579999996 89999999999999999999884 56899999995
No 234
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.9e-09 Score=80.63 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIR-ILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~-~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||.|.+|+ ++.++.+|+ |||+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~ 62 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYS 62 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEES
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEEC
Confidence 456999999999999999999999999999995 888865554 999995
No 235
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2.6e-09 Score=81.08 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGG-VSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+++++++|+.+|++||. |..+.+. ++|||||+|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~ 52 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYP 52 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEEC
Confidence 4569999999999999999999999999 6666552 4799999995
No 236
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.79 E-value=7.1e-07 Score=81.01 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=109.1
Q ss_pred HhcCChhhHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC--------CCcHHHHHH
Q 013489 34 QSSGDPGRVQLLYERAITD--------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNC--------PWVGELWVR 97 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~--------~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~--------p~s~~lW~~ 97 (442)
...|+++.+..+|++|+.. .|....+|...+..+.. .+..+.+...|++|+... |....+|..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3467888999999999873 35556677777766554 456677999999999864 444566776
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 013489 98 SLLSLERSRASEEEISTVFEKSLLCA--------FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASD 169 (442)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~~al~~~--------~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~ 169 (442)
... +....++.+.+...|++++... +.....+..+-..+ .. ..++......|++++.
T Consensus 91 l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-----~~---------~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 91 LAV-LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC-----QN---------QGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHH-HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----HT---------TTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-----HH---------cCCHHHHHHHHHHHHH
Confidence 665 4445788999999999998641 21112121111111 01 1345566677777777
Q ss_pred HHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 170 YLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 170 ~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
........ .+....++...+.+....| +++.|..+|++++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 65544332 3445678888999999999 999999999999986
No 237
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.77 E-value=7.9e-09 Score=94.51 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=47.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+|||+|||+.+++++|+.+|+.||.|.+|.++.+ .+|+++|||||+|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~ 145 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFA 145 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEES
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeC
Confidence 459999999999999999999999999999999999 69999999999996
No 238
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=1.1e-06 Score=77.11 Aligned_cols=171 Identities=8% Similarity=-0.032 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHhcchhhHHHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLD----------------YTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~----------------Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
.+.+..-+......|+++.+...|+++|..+|.++..|.. .+..+. ..+..+.+...|++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 3455555555667899999999999999999999999887 665554 34567889999999999
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHH
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~ 166 (442)
..|.+...|......+. ..+..+.+...|++++...|.....+..+-..+...- ......
T Consensus 83 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-------------------~~~~~~ 142 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-------------------EQEKKK 142 (208)
T ss_dssp HCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------------HHHHHH
T ss_pred HCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-------------------HHHHHH
Confidence 99999999999877554 4788999999999999888776554443332221000 011112
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 167 ASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 167 a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
+...+.......+... .|..........+ +++.|...|+++++.+|+.
T Consensus 143 ~~~~~~~~~~~~~~~~-a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 143 LETDYKKLSSPTKMQY-ARYRDGLSKLFTT-RYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHC---CCCHHHH-HHHHHHHHHHHHH-THHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHhCCCchhH-HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCH
Confidence 2222222222222211 2222233334455 7888999999999888874
No 239
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.75 E-value=1.2e-08 Score=81.63 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcce-EEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVV-QSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-~fv~f~ 441 (442)
.-..|||+||++.+++++|+.+|++||.|.+|.++.+ ++|| |||+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~ 74 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYA 74 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEES
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEEC
Confidence 3458999999999999999999999999999988764 3688 999995
No 240
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.74 E-value=1.2e-08 Score=94.39 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=48.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||+|||+.+++++|+.+|+.||.|.+++++.++.+|+++|||||+|.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 145 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYM 145 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEEC
Confidence 369999999999999999999999999999999999889999999999995
No 241
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=2.7e-07 Score=85.39 Aligned_cols=168 Identities=15% Similarity=0.016 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHH
Q 013489 54 PVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDL 133 (442)
Q Consensus 54 p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~ 133 (442)
|.+.+.++..+..+... ++.+.+...|++++...|.....|......+. ..+..+++..+|++++...+......+..
T Consensus 114 p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQE-SNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 55556665555544432 34455666777777766766666666665333 35666666666666665443311111110
Q ss_pred HHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 013489 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS 213 (442)
Q Consensus 134 ~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~ 213 (442)
. +.... . .....|+..+...+...|....++..++.++...| +++.|...|.+++..+
T Consensus 192 ~---~~l~~-~-----------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 Q---IELLX-Q-----------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVG-RNEEALELLFGHLRXD 249 (287)
T ss_dssp H---HHHHH-H-----------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred H---HHHHh-h-----------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcc
Confidence 0 00000 0 00111222222222234556678888898888888 8999999999999999
Q ss_pred hhH--HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 214 GAM--LEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 214 ~~~--~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
|++ ...|..++.+....|+.+.|...|.+++.
T Consensus 250 p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 LTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 887 78999999999999999999999999886
No 242
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.73 E-value=1.4e-08 Score=94.03 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=45.2
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLR----RFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+++++++|+ .+|+.||.|.+|+++. +|+++|||||+|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~ 60 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFK 60 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEEC
Confidence 346799999999999999977 8999999999998875 7889999999996
No 243
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.73 E-value=3.1e-08 Score=78.80 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=39.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcce-EEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVV-QSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-~fv~f~ 441 (442)
...|||+|||+.+++++|+.+|++||.|.+|+|+.. .|| |||+|.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~ 70 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFE 70 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEES
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEEC
Confidence 346899999999999999999999999999998652 286 999995
No 244
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.72 E-value=1e-08 Score=90.76 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=44.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+|||+|||+.+++++|+.+|+.||.|.+|+|+.|+ +.++|||||+|.
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~ 151 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFE 151 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEES
T ss_pred ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeC
Confidence 489999999999999999999999999999999983 457999999995
No 245
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=8.9e-08 Score=99.88 Aligned_cols=174 Identities=14% Similarity=0.009 Sum_probs=126.4
Q ss_pred HhcCChhhHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 013489 34 QSSGDPGRVQLLYERAI--------TDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal--------~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~ 105 (442)
...|+++.+...|++++ ..+|.+...|...+..+... +..+.+...|++|+...|....+|......+. .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-L 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-H
Confidence 56789999999999999 88999999999988766644 45677999999999999999999998776444 4
Q ss_pred cCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHH
Q 013489 106 RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY 185 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~ 185 (442)
.++.+++...|++|+...+.....+..+-..+. .. .++.. ...|++|+.. .+.....|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~-----~~---------g~~~~-~~~~~~al~~-------~P~~~~a~ 537 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAE-----LA---------GNTDE-HKFYQTVWST-------NDGVISAA 537 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-----HH---------TCCCT-TCHHHHHHHH-------CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----Hc---------CChHH-HHHHHHHHHh-------CCchHHHH
Confidence 688999999999999877764443332222111 11 12222 3455555553 34455678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Q 013489 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (442)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~ 232 (442)
...+.+....| +++.|...|++++...|++...|...+......|.
T Consensus 538 ~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEG-DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcC-CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888 88889999999888888888888777776654443
No 246
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.71 E-value=8.3e-07 Score=74.97 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=114.6
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
+...|+.++...|. +...|...+......|+++.+..+|++++...|.+..+|...+..+... ++.+.+...|++
T Consensus 27 A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~ 101 (186)
T 3as5_A 27 AVMLLEQVYDADAF----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV-QKYDLAVPLLIK 101 (186)
T ss_dssp HHHHHTTTCCTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 44555555555543 6778888888888899999999999999999999999999998877644 456779999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHH
Q 013489 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRET 163 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~ 163 (442)
++...|....+|...+..+.. .++.+.+...|++++...+.
T Consensus 102 ~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~-------------------------------------- 142 (186)
T 3as5_A 102 VAEANPINFNVRFRLGVALDN-LGRFDEAIDSFKIALGLRPN-------------------------------------- 142 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT--------------------------------------
T ss_pred HHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCcc--------------------------------------
Confidence 999999998888887764443 57777777777776643222
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
...++...+.+....| +++.|..+|++++...|++
T Consensus 143 -----------------~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 143 -----------------EGKVHRAIAFSYEQMG-RHEEALPHFKKANELDEGA 177 (186)
T ss_dssp -----------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHCC
T ss_pred -----------------chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCc
Confidence 1234555666666777 8888888888888876653
No 247
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.71 E-value=8.8e-07 Score=92.46 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=126.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHH
Q 013489 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYL 131 (442)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~ 131 (442)
.+|.+.+.|......+... +..+.+...|++|+...|.....|......+.. .+..+++...|++|+...+.
T Consensus 4 s~P~~a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------
Confidence 4677788888887766644 455778888888888888888888887664443 57777777777776654332
Q ss_pred HHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013489 132 DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (442)
Q Consensus 132 ~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~ 211 (442)
....|...+.+....| +++.|.+.|+++++
T Consensus 76 -------------------------------------------------~~~a~~nLg~~l~~~g-~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 76 -------------------------------------------------FADAYSNMGNTLKEMQ-DVQGALQCYTRAIQ 105 (723)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 2335555666667788 99999999999999
Q ss_pred hchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhc
Q 013489 212 ISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 212 ~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
.+|++...|...+......|+++.|...|++|+. +.++.+ ..+......-...|+.++...+.+++.
T Consensus 106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~-~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFP-DAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 455555 455566666667787766655555543
No 248
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.71 E-value=1.1e-08 Score=95.25 Aligned_cols=53 Identities=8% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 387 GFTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 387 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+.++|||+|||+++++++|+.+|+.||.|.+|+|+.++ .| ++|||||+|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~-~~g~afV~f~ 89 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL-KK-NFRFARIEFA 89 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-SSEEEEEEES
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcEEEEEEEC
Confidence 34567899999999999999999999999999999999985 33 5899999996
No 249
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.69 E-value=3e-06 Score=78.49 Aligned_cols=187 Identities=12% Similarity=-0.010 Sum_probs=130.1
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
+...|+..|.... +|++...|...+......|+++.+..+|++ |.+...|...+..+... +..+.+...|++
T Consensus 84 A~~~l~~ll~~~~--~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSV--DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL-DRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 4567777776531 123677888888888899999999999998 89999999988877644 456789999999
Q ss_pred HHHcCCCcHHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHH
Q 013489 84 ATKNCPWVGELW--VRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIR 161 (442)
Q Consensus 84 Al~~~p~s~~lW--~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r 161 (442)
++...|...... ..|+. +....+..+++..+|++++...+.....+..+-..+. +. .++....
T Consensus 156 ~~~~~p~~~~~~l~~a~~~-l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-----~~---------g~~~eA~ 220 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVS-LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-----AQ---------GRWEAAE 220 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-----HT---------TCHHHHH
T ss_pred HHhhCcCcHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----Hc---------CCHHHHH
Confidence 999999875322 22333 2233577899999999999876654443332222111 11 2333334
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHH
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
..|++++. ..+.....|...+.+....|+..+.+..++++++..+|+++.+.
T Consensus 221 ~~l~~al~-------~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 221 GVLQEALD-------KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 44444444 35566678888888888889555568899999999999987643
No 250
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.68 E-value=2.3e-08 Score=79.72 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||||+ ++++++|+.+|+.||.|.+|.++ +++|||||+|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~ 81 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYE 81 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEEC
Confidence 34579999996 69999999999999999999985 56899999995
No 251
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.68 E-value=1.4e-05 Score=72.62 Aligned_cols=210 Identities=10% Similarity=-0.081 Sum_probs=144.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhh
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGN 75 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~----~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~ 75 (442)
++...|+.++. +. +...|......... .++++.+...|++++... ++..|......+... .++.+
T Consensus 24 ~A~~~~~~a~~--~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 24 QAKKYFEKACD--LK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp HHHHHHHHHHH--TT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHH--CC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHH
Confidence 35567777776 22 45577777777777 899999999999999875 788888887766541 45667
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 76 VVRDVYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 76 ~~~~v~erAl~~~p~s~~lW~~y~~~le~~---~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
.+...|++|+.. .....|......+... .++.+.+...|++++..+.... +..+-..+. .- ...
T Consensus 96 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a--~~~lg~~~~-----~~---~~~- 162 (273)
T 1ouv_A 96 KALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDG--CTILGSLYD-----AG---RGT- 162 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHH-----HT---SSS-
T ss_pred HHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHH--HHHHHHHHH-----cC---CCC-
Confidence 899999999986 3566777766544431 5788999999999998764322 222111111 00 000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEI 228 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~----~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~ 228 (442)
..++......|++++. ..+ ...+...+.+... .+ +++.|...|++++...+ ...+.....+..
T Consensus 163 -~~~~~~A~~~~~~a~~-------~~~--~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 163 -PKDLKKALASYDKACD-------LKD--SPGCFNAGNMYHHGEGATK-NFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp -CCCHHHHHHHHHHHHH-------TTC--HHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHH-------CCC--HHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 1233344444444443 222 3456667777777 67 99999999999998855 556777777777
Q ss_pred h----cccHHHHHHHHHHHHhc
Q 013489 229 E----LDHINEARSIYKRCYSK 246 (442)
Q Consensus 229 ~----~g~~~~ar~i~~ral~~ 246 (442)
. .++++.|...|++|+..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 7 78999999999999973
No 252
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.67 E-value=1.6e-08 Score=90.61 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=44.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINL-KATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+ ++++++|+.+|+.||.|.+|+++.++ +|||||+|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~ 80 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMA 80 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEES
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEEC
Confidence 3457999999999 99999999999999999999999884 799999995
No 253
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.66 E-value=2.5e-08 Score=91.13 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=43.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+.++|||||||+++|+++|+.+|+.||.|.+|.++. ++|||||+|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~ 66 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLE 66 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEEC
Confidence 35567999999999999999999999999999999864 3799999995
No 254
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=3.7e-07 Score=75.65 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=98.3
Q ss_pred chhhHHHHHHhhc---CCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHH
Q 013489 2 CNARAHLEEQISR---QDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVR 78 (442)
Q Consensus 2 ~~~r~~yE~~l~~---~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~ 78 (442)
+..+..+|.+|.. ....++++...|..++......|+++.+...|+++|..+|.++..|......+.. .++.+.+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHHH
Confidence 3456666666633 2223456677788888888899999999999999999999999999999987764 45667899
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHH
Q 013489 79 DVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (442)
Q Consensus 79 ~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~ 128 (442)
..|++|+...|....+|......+.......+.++..+++|+...|.+..
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 99999999999999999998876655433345566677999987776433
No 255
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.65 E-value=1.5e-08 Score=88.87 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGV--SSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+|||+|||+++++++|+++|++||.| .+++++.++ |+++|||||+|.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~ 173 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWD 173 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeC
Confidence 4699999999999999999999999999 899998874 666799999995
No 256
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=1.2e-06 Score=70.28 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=95.3
Q ss_pred CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHH
Q 013489 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (442)
Q Consensus 18 ~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~ 97 (442)
.||+..+.|.+-.....+.|+++.+...|+++|..+|.++.+|...+..+.. .+..+.+...|++|+...|.....|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4677888999999888899999999999999999999999999999887764 456678999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCChhhHH
Q 013489 98 SLLSLERSRASEEEISTVFEKSLLCAFSTFE 128 (442)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~~al~~~~~~~~ 128 (442)
....+.. .+..+++...|++++...|....
T Consensus 87 lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 87 KAACLVA-MREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHHCcCCHH
Confidence 8875554 78899999999999998777544
No 257
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=7e-07 Score=90.94 Aligned_cols=164 Identities=12% Similarity=-0.062 Sum_probs=89.0
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHH
Q 013489 37 GDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVF 116 (442)
Q Consensus 37 g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~ 116 (442)
|+++.+...|++++..+|.+...|...+..+... ++.+.+...|++|+...|.....|..+...+. ..++.+++...|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHH
Confidence 5666777777777777777777777777655533 34566777777777777777777777665443 356677777777
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHc-
Q 013489 117 EKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM- 195 (442)
Q Consensus 117 ~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~- 195 (442)
++++...+.....+..+-..+. .. .++......|++++. ..+.....+..++.+....
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~-----~~---------g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALE-----DA---------GQAEAAAAAYTRAHQ-------LLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH-----HT---------TCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhh
Confidence 7777655544332222211110 00 222222333333333 2344456777888888888
Q ss_pred --CCCHHHHHHHHHHHHHhchhHHHHHHHHH
Q 013489 196 --GKDMVSARGVWERLLKISGAMLEAWQSYI 224 (442)
Q Consensus 196 --~~~~~~ar~i~~~~l~~~~~~~~~w~~~~ 224 (442)
+ +.+.|...|++++...|+....|...+
T Consensus 140 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 140 DWR-ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CCT-THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ccc-cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 7 899999999999999887766554333
No 258
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=3.2e-06 Score=78.62 Aligned_cols=220 Identities=9% Similarity=0.047 Sum_probs=166.0
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhcCCCCHHHHHHHHHHH----HHhc--chhh
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG--DPGRVQLLYERAITDFPVSSDLWLDYTQYL----DKTL--KVGN 75 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g--~~~~~~~lyERal~~~p~~~~lW~~Y~~~l----~~~~--~~~~ 75 (442)
+-..++.+|..+|. ++.+|..=.......| .++.++.+++.+|..+|.+..+|..-...+ .... ...+
T Consensus 52 aL~~t~~~L~~nP~----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 52 ALHITELGINELAS----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHCcH----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45677888888876 8899988888777778 899999999999999999999999988777 3221 3456
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCChhhH--HHHHHHHHHHHHHHHHHhhccCcc
Q 013489 76 VVRDVYSRATKNCPWVGELWVRSLLSLERSRASEE--EISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFSGEV 151 (442)
Q Consensus 76 ~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~--~~~~i~~~al~~~~~~~--~~~~~~~~~~~~~l~rr~~~~~~~ 151 (442)
.....+++++...|.+..+|....-.+.. .+..+ .....+++++...+.+. |.+..+.+. +.
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~-------~l------ 193 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDT-FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF-------SK------ 193 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------SS------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------hc------
Confidence 68899999999999999999998766665 34444 66678888887776643 333322210 00
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHH
Q 013489 152 EGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEI 228 (442)
Q Consensus 152 ~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~---~~~~~~w~~~~~~e~ 228 (442)
.. ......++++++++..++...+.....|.+..-+....|...+.+..+.++++... +.+...|.-.++...
T Consensus 194 ---~~-~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 194 ---KH-LATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp ---GG-GCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred ---cc-cchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 00 01234588899988888876777778998888888888866777888888887764 666777777777777
Q ss_pred hcccHHHHHHHHHHHHh
Q 013489 229 ELDHINEARSIYKRCYS 245 (442)
Q Consensus 229 ~~g~~~~ar~i~~ral~ 245 (442)
..|+.+.|..+|+++..
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 78999999999999875
No 259
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.64 E-value=2.1e-08 Score=89.15 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=43.4
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 388 FTDECTAFLSNINLKA---------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 388 ~~~~~~v~v~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
....++|||||||..+ ++++|+.+|++||.|.+|+|+.+ +|||||+|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeC
Confidence 4567899999999998 79999999999999999999863 799999996
No 260
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.64 E-value=3.8e-09 Score=90.31 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.++|||+|||+++++++|+.+|..||.+.. .++.+..+|+++|||||+|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~ 62 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFE 62 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEEC
Confidence 45679999999999999999999999998877 34455578999999999996
No 261
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.62 E-value=2.8e-08 Score=92.37 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=47.2
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCC-CCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKF-TGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~~fv~f~ 441 (442)
...++|||+|||+. +++++|+.+|+.||.|.+|+++.++. ||+++|||||+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 34569999999999 99999999999999999999999865 5999999999996
No 262
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=5.8e-08 Score=71.95 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=34.1
Q ss_pred eEEEcCCCCCCCHHH----HHHHhccC-CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYED----LRRFFSDV-GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.|||+|||+.+++++ |+.+|++| |.|.+| || |||||.|.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~ 54 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFI 54 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEEC
Confidence 499999999999987 55899999 499988 44 99999995
No 263
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.61 E-value=8e-08 Score=74.34 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=43.3
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeeCCCC-CCCcceEEEEee
Q 013489 391 ECTAFLSNINL-----KATYEDLRRFFSDVGGVSSIRILHDKFT-GKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~~fv~f~ 441 (442)
.++|+|+|+.. +-++++|+..|++||.|.+|.|+.++.+ |+++|||||+|.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~ 64 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFE 64 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEES
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEEC
Confidence 45999999963 2378999999999999999999998654 789999999995
No 264
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.60 E-value=5.2e-08 Score=83.13 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=42.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||+.+++++|+.+|++||.|..+ ..+|+++|||||+|.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~ 144 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFK 144 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEEC
Confidence 345799999999999999999999999987655 378999999999995
No 265
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.59 E-value=5.3e-08 Score=90.13 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKA-TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+ ++++|+.+|+.||.|.+++|+.++ +|+++|||||+|.
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 234 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYE 234 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECS
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeC
Confidence 45699999999995 999999999999999999999994 8999999999995
No 266
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=8.7e-07 Score=73.23 Aligned_cols=116 Identities=8% Similarity=-0.051 Sum_probs=97.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.+|...| ++...|..++......|+++.+...|++++..+|.++..|......+.. .+..+.+...|+
T Consensus 5 ~~~~~~~~al~~~p----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~ 79 (148)
T 2vgx_A 5 SGGGTIAMLNEISS----DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYS 79 (148)
T ss_dssp -CCCSHHHHTTCCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred chhhhHHHHHcCCH----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 34556777876654 4888999999999999999999999999999999999999998876664 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
+|+...|.....|......+. ..+..+++...|++++...+
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 999999999999988776444 47889999999999997544
No 267
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=2e-05 Score=69.74 Aligned_cols=183 Identities=11% Similarity=-0.013 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHH---HHHH
Q 013489 24 QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE---LWVR 97 (442)
Q Consensus 24 ~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~---lW~~ 97 (442)
..|...+......|+++.+...|++++..+|.++ ..|...+..+.. .++.+.+...|++++...|.+.. .|..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455555555678999999999999999988764 566666554443 45667899999999999998754 2322
Q ss_pred HHHHHHH-----------------ccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHH
Q 013489 98 SLLSLER-----------------SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLI 160 (442)
Q Consensus 98 y~~~le~-----------------~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~ 160 (442)
....+.. ..+..+.+...|++++...|........ ..++.. +
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a--~~~l~~-------------------~ 142 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA--TKRLVF-------------------L 142 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH--HHHHHH-------------------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH--HHHHHH-------------------H
Confidence 2222211 1234556666677766554432110000 000000 0
Q ss_pred HHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH---HHHHHHHHHHHhcccHHHHH
Q 013489 161 RETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML---EAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 161 r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~---~~w~~~~~~e~~~g~~~~ar 237 (442)
.. .........+.+....| ++..|...|++++..+|++. +.|...+......|+.+.|.
T Consensus 143 ~~-----------------~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 143 KD-----------------RLAKYEYSVAEYYTERG-AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH-----------------HHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 00 00012234566777788 99999999999999988764 67889999999999999999
Q ss_pred HHHHHHHhc
Q 013489 238 SIYKRCYSK 246 (442)
Q Consensus 238 ~i~~ral~~ 246 (442)
..|+++...
T Consensus 205 ~~~~~l~~~ 213 (225)
T 2yhc_A 205 KVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998863
No 268
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=1.1e-06 Score=72.97 Aligned_cols=106 Identities=8% Similarity=-0.080 Sum_probs=93.2
Q ss_pred CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHH
Q 013489 18 SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVR 97 (442)
Q Consensus 18 ~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~ 97 (442)
.+|++.+.|..........|+++.+..+|++++..+|.++..|......+.. .+..+.+...|++|+...|.+...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3567899999999989999999999999999999999999999999886664 456678999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 98 SLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 98 y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
....+. ..+..+++...|++++...++
T Consensus 110 lg~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 110 TGQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 877555 478999999999999986654
No 269
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=6.7e-07 Score=82.50 Aligned_cols=194 Identities=11% Similarity=-0.034 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+...|...+......|+++.+..+|+++|..+|.+..+|...+..+.. .+..+.+...|++|+...|....+|......
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456778888888889999999999999999999999999999987664 4566789999999999999999999988775
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHHH-HHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchh
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEYL-DLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDG 180 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~~-~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~ 180 (442)
+.. .+..+++...|++++...+.....+. .++... +..-......+... ..+.
T Consensus 82 ~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~--~~~~ 135 (281)
T 2c2l_A 82 QLE-MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----------------------RIAKKKRWNSIEER--RIHQ 135 (281)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----------------------HHHHHHHHHHHHHT--CCCC
T ss_pred HHH-cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----------------------HHHHHHHHHHHHHH--HHhh
Confidence 554 68899999999999976543210000 011000 00000000001111 1112
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHh
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIEL-DHINEARSIYKRCYS 245 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~-g~~~~ar~i~~ral~ 245 (442)
...+...+..+. .| +.+.|.+.|++++...|++..+......+.... +.++.++.+|.++..
T Consensus 136 ~~~i~~~l~~l~--~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 136 ESELHSYLTRLI--AA-ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCHHHHHHHHHH--HH-HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHH--HH-HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 223444444443 35 789999999999999998888777777777666 578899999999875
No 270
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=3.8e-05 Score=71.93 Aligned_cols=198 Identities=9% Similarity=-0.003 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHcCCCcHHHH
Q 013489 26 YMIYLKYEQSSGDP-GRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELW 95 (442)
Q Consensus 26 w~~y~~~e~~~g~~-~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~---------~~~~~~v~erAl~~~p~s~~lW 95 (442)
-+.++--....|+. +++..+++.+|..+|.+..+|..--..+...... .+.....++.++...|.+..+|
T Consensus 32 ~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW 111 (331)
T 3dss_A 32 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW 111 (331)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 33344334456665 4899999999999999999999887766543321 3457788999999999999999
Q ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHh
Q 013489 96 VRSLLSLERSRA-SEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (442)
Q Consensus 96 ~~y~~~le~~~~-~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~ 172 (442)
....-.+..... ..+.....+.+++...+.+ .|.+..+....+ .. .++.+++++.
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l----------------~~------~~~eel~~~~ 169 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA----------------AV------APAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----------------TC------CHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------------Cc------CHHHHHHHHH
Confidence 998876766443 3677778899999877664 343333222111 00 1234455555
Q ss_pred hhhcCchhhHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhc---------
Q 013489 173 EQMKNTDGLLRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIEL--------- 230 (442)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~-------------~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~--------- 230 (442)
..+..++.....|.+-..+...+. +.++.+.+.+.+++..+|++...|...--+....
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 555445666667877666555542 1367889999999999999999997655544433
Q ss_pred --ccHHHHHHHHHHHHh
Q 013489 231 --DHINEARSIYKRCYS 245 (442)
Q Consensus 231 --g~~~~ar~i~~ral~ 245 (442)
+-++++...++.++.
T Consensus 250 ~~~~l~~el~~~~elle 266 (331)
T 3dss_A 250 KSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 236778888888886
No 271
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=5.7e-05 Score=70.78 Aligned_cols=246 Identities=9% Similarity=-0.031 Sum_probs=158.3
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK- 72 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~----------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~- 72 (442)
+-..++.+|..+|. ++.+|.-=-......+. +.....+++.+|..+|.+..+|..-.-.+.....
T Consensus 49 aL~~t~~~L~~nP~----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 49 VLELTSQILGANPD----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHTTCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHCch----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 34567777777775 88888755444443332 4677888999999999999999988876664432
Q ss_pred hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCc
Q 013489 73 VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGE 150 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~ 150 (442)
..+.....+++++...|.....|......+.......++....+.+++...+.+ .|.+....+.. +.....
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~-------l~~~~~ 197 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ-------LHPQPD 197 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------HSCCC-
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------hhhccc
Confidence 245688999999999999999999877666654433566777788888776663 44444332211 110000
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHhchhHHHHH
Q 013489 151 VEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG----------KDMVSARGVWERLLKISGAMLEAW 220 (442)
Q Consensus 151 ~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~----------~~~~~ar~i~~~~l~~~~~~~~~w 220 (442)
.. .........++++++++..++...|.....|.+..-+..... +-++.+.+.+++++...|++.-..
T Consensus 198 ~~--~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 198 SG--PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cc--cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 00 000000245677777777777666666778876544444331 136789999999999999885455
Q ss_pred HHHHHHHHh---cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013489 221 QSYISMEIE---LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG 268 (442)
Q Consensus 221 ~~~~~~e~~---~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (442)
+..+.+... .|..+.++..+.+.+. +++--. ..|.+++..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~----~~y~d~~~~~~ 320 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA----AYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH----HHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchh----hHHHHHHHHHH
Confidence 555544432 4677889999999885 332222 36666666543
No 272
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=2.1e-06 Score=70.12 Aligned_cols=113 Identities=9% Similarity=-0.059 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 7 HLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
.|+.+|.. +|++...|...+......|+++.+..+|++++..+|.++.+|......+.. .+..+.+...|++|+.
T Consensus 6 ~l~~al~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 6 TLAMLRGL----SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGAL 80 (142)
T ss_dssp ---CCTTC----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHcC----CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 44555544 355888999999988899999999999999999999999999998886664 4566789999999999
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
..|....+|......+. ..++.+.+...|++++...+.
T Consensus 81 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHL-QLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 99999999988776444 478899999999999976543
No 273
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.50 E-value=4.1e-05 Score=70.32 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=123.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 52 DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN--------CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 52 ~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~--------~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
.+|....+|...+..+... ++.+.+..+|++++.. .|....+|......+ ...+..+.+...|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQ-GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-RDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHH
Confidence 3566667777777666543 4567799999999984 455556677666533 44788999999999998641
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCC
Q 013489 124 -----FSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGK 197 (442)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~ 197 (442)
.... .....+....... .. ..++......|++++......... .+....++...+.+....|
T Consensus 100 ~~~~~~~~~-~~~~~~~~l~~~~-~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~- 167 (311)
T 3nf1_A 100 EKTLGKDHP-AVAATLNNLAVLY-GK---------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG- 167 (311)
T ss_dssp HHHHCTTCH-HHHHHHHHHHHHH-HT---------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-
T ss_pred HHHhCCCCh-HHHHHHHHHHHHH-HH---------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-
Confidence 1100 1111111111011 01 134555666777777765443322 2445677888899988888
Q ss_pred CHHHHHHHHHHHHHh--------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 198 DMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+++.|..+|++++.. .|....+|...+.+....|+++.|..+|++++.
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998 677778999999999999999999999999996
No 274
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.49 E-value=9.7e-06 Score=73.34 Aligned_cols=95 Identities=7% Similarity=-0.072 Sum_probs=71.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHh-------cc
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKT-------LK 72 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~-------~~ 72 (442)
+|...|+..|...|. ++.....|...+......|+++.+...|+++|..+|.++ ..|...+..+... .+
T Consensus 33 ~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 33 RAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 467789999988775 122266788888878889999999999999999988664 4455444443320 45
Q ss_pred hhhHHHHHHHHHHHcCCCcHHHHHHH
Q 013489 73 VGNVVRDVYSRATKNCPWVGELWVRS 98 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~lW~~y 98 (442)
..+.+...|++++...|.+...+...
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 66789999999999999887666554
No 275
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=2.8e-06 Score=71.97 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=100.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchh--hHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVG--NVVRDV 80 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~--~~~~~v 80 (442)
++...|+.++...|. +...|..++......|+++.+...|++++..+|.++.+|..++..+....+.. +.+...
T Consensus 28 ~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 28 AQLQALQDKIRANPQ----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp CCCHHHHHHHHHCCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 456788999988875 67889999999999999999999999999999999999999998744334454 779999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 81 YSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 81 ~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
|++++...|....+|......+. ..++.+.+...|++++...+.
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999988777444 468899999999999987665
No 276
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.47 E-value=1.3e-05 Score=63.43 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 013489 26 YMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS 105 (442)
Q Consensus 26 w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~ 105 (442)
|...+......|+++.+..+|++++...|.+...|...+...... ++.+.+...|++++...|....+|..++..+. .
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-K 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-H
Confidence 444455555566677777777777766666666666655544432 33455666666666666655555544443222 2
Q ss_pred cCCHHHHHHHHHHH
Q 013489 106 RASEEEISTVFEKS 119 (442)
Q Consensus 106 ~~~~~~~~~i~~~a 119 (442)
.++.+.+..+|+++
T Consensus 82 ~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 82 QGDYDEAIEYYQKA 95 (136)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 33444444444443
No 277
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.47 E-value=2.2e-06 Score=70.84 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=84.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|..+.......|+++.+...|+++|..+|.++..|...+..+...+...+.+...++
T Consensus 49 ~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 49 LAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 467789999988876 7889999999999999999999999999999999999999999887766554454555679
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~ 104 (442)
+|++..|.+..+|......+..
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999999887776654
No 278
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.46 E-value=3.2e-07 Score=84.68 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=43.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|||+|||..+++++|+.+|+.||.|.+|+++.++ +|||||+|.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~ 252 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFD 252 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeC
Confidence 446799999999999999999999999999999999763 689999996
No 279
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.45 E-value=3.8e-06 Score=85.45 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=92.9
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|..++......|+++.+...|++++..+|.+...|..++..+... ++.+.+...|+
T Consensus 7 ~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~ 81 (568)
T 2vsy_A 7 RELLQLRAAVRHRPQ----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ-QRHAEAAVLLQ 81 (568)
T ss_dssp --------------C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 456778888877765 6788999999888999999999999999999999999999999877644 56678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEY 130 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~ 130 (442)
+|+...|.+...|..+...+. ..++.+++...|++++...+.....+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999877444 47889999999999998776654433
No 280
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=4.3e-05 Score=71.99 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQS-SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLL 100 (442)
Q Consensus 22 ~~~~w~~y~~~e~~-~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~ 100 (442)
++..-+.|+.-... .+..+++..+++++|..+|.+..+|..-...+...+...+.....++.++...|.+..+|.....
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44444444444444 44557899999999999999999999888877754435677899999999999999999999887
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC
Q 013489 101 SLERSRA-SEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN 177 (442)
Q Consensus 101 ~le~~~~-~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~ 177 (442)
.+....+ ..++....+.+++...+.+ .|.+..+.+..+... .. .+ ...+.++++++...+..
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~-------~~----~~----~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL-------GR----IS----EAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT-------TC----CC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-------cc----cc----hhhHHHHHHHHHHHHHh
Confidence 7776523 5566667899999887764 344443332222110 00 01 13345566666666655
Q ss_pred chhhHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Q 013489 178 TDGLLRLYAYWAHLEQSMGKD------MVSARGVWERLLKISGAMLEAWQSYISMEIELD 231 (442)
Q Consensus 178 ~~~~~~l~~~~a~~e~~~~~~------~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g 231 (442)
++.....|.+-..+....++. ++.+.+.+.+++..+|++...|...--+....|
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 666677888877776666621 678999999999999999999987776666555
No 281
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=2.9e-06 Score=72.03 Aligned_cols=117 Identities=8% Similarity=-0.075 Sum_probs=90.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.+|...|. +...|..++......|+++.+...|++++...| ++.++................+...|+
T Consensus 24 ~A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 98 (176)
T 2r5s_A 24 QALNVIQTLSDELQS----RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLE 98 (176)
T ss_dssp HHHHHHHTSCHHHHT----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHH
Confidence 355667777766654 788999999999999999999999999999999 887665544332211111123678999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
+++...|.+..+|..+...+.. .++.+++...|++++...+.
T Consensus 99 ~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 99 QELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcc
Confidence 9999999999999998875554 78889999999999876543
No 282
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.4e-07 Score=68.03 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 401 LKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 401 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+++++|+.+|++||.|.+|+|+ ++++|||||+|.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~ 62 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFA 62 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEES
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEEC
Confidence 468999999999999999999988 468999999995
No 283
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.42 E-value=1.9e-07 Score=87.53 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=39.5
Q ss_pred CceEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSN--INLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..+||||| |++.+++++|+++|++||.|.+|.++. +||||||+|.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~ 64 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYR 64 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEES
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEEC
Confidence 45999999 589999999999999999999987653 4799999995
No 284
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.41 E-value=3.4e-06 Score=87.86 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=122.1
Q ss_pred CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 53 FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRAT--------KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 53 ~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl--------~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
+|.++..+.... ...++.+.+...|++|+ ...|.+..+|......+. ..++.+++...|++++...+
T Consensus 390 ~p~~~~a~~~~a----~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 390 DPTDVAASVLQA----TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CTTSTTHHHHHH----TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHhhc----ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCc
Confidence 455555444322 23456678999999999 788999999998877444 36889999999999998766
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHH
Q 013489 125 STFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARG 204 (442)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~ 204 (442)
..+..+..+-..+. .. .++......|++|+. ..+.....|...+.+....| +++. ..
T Consensus 465 ~~~~a~~~lg~~~~-----~~---------g~~~~A~~~~~~al~-------l~P~~~~~~~~lg~~~~~~g-~~~~-~~ 521 (681)
T 2pzi_A 465 WRWRLVWYRAVAEL-----LT---------GDYDSATKHFTEVLD-------TFPGELAPKLALAATAELAG-NTDE-HK 521 (681)
T ss_dssp CCHHHHHHHHHHHH-----HH---------TCHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHT-CCCT-TC
T ss_pred chHHHHHHHHHHHH-----Hc---------CCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcC-ChHH-HH
Confidence 65544433222221 00 233344444555544 34555678888999988999 8888 99
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 205 VWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 205 i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.|+++++.+|++...|...+......|+++.|...|++|+.
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999986
No 285
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=4.5e-06 Score=70.67 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=98.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCH--HHHH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASE--EEIS 113 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~--~~~~ 113 (442)
.|+++.+..+|++++..+|.+...|...+..+... ++.+.+...|++++...|.+..+|..+...+....+.. +.+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 46788899999999999999999999988876643 45677999999999999988888888777534334554 6666
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHH
Q 013489 114 TVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (442)
Q Consensus 114 ~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (442)
..|++++...+. ...+|...+.++.
T Consensus 102 ~~~~~al~~~p~-------------------------------------------------------~~~~~~~la~~~~ 126 (177)
T 2e2e_A 102 AMIDKALALDSN-------------------------------------------------------EITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHCTT-------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-------------------------------------------------------cHHHHHHHHHHHH
Confidence 666665543222 2234555566666
Q ss_pred HcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 194 SMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
..| +++.|...|++++...|++...+.- ...+..++.+.....
T Consensus 127 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~-------~~~i~~~~~~~~~~~ 169 (177)
T 2e2e_A 127 MQA-NYAQAIELWQKVMDLNSPRINRTQL-------VESINMAKLLQRRSD 169 (177)
T ss_dssp HTT-CHHHHHHHHHHHHHTCCTTSCHHHH-------HHHHHHHHHHHHHHH
T ss_pred Hcc-cHHHHHHHHHHHHhhCCCCccHHHH-------HHHHHHHHHhcCCCC
Confidence 677 8888888888888887776443221 123445555555544
No 286
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.36 E-value=9.9e-07 Score=76.75 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=42.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||..+++++|+++|+.|| .|.+|+++.+ .+|||||+|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~ 166 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMG 166 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeC
Confidence 467999999999999999999999999 9999998765 2799999995
No 287
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.36 E-value=7.9e-05 Score=67.18 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=113.1
Q ss_pred chhhHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHH
Q 013489 72 KVGNVVRDVYSRATKNC--------PWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA--------FSTFEEYLDLFL 135 (442)
Q Consensus 72 ~~~~~~~~v~erAl~~~--------p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~--------~~~~~~~~~~~~ 135 (442)
++.+.+...|++|+..+ |....+|...... ....+..+.+...|++++... +.....+..+-.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALV-YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45566888888888743 4445667666653 344788999999999998641 111111111111
Q ss_pred HHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--
Q 013489 136 TRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-- 212 (442)
Q Consensus 136 ~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-- 212 (442)
.+ .. ..++......|.+++......... .+....++...+.+....| +++.|..+|++++..
T Consensus 94 ~~-----~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 94 LY-----GK---------RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HH-----HT---------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HH-----HH---------hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 11 01 135556667778887776555443 3455678888999998889 999999999999998
Q ss_pred ------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 213 ------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 213 ------~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.|....+|..++.+....|+++.|..+|++++..
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777789999999999999999999999999963
No 288
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=1.9e-06 Score=81.68 Aligned_cols=84 Identities=6% Similarity=-0.014 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~f 263 (442)
+|...+.+....+ +++.|...|++++..+|++...|...+......|+++.|...|++|+.. .++.+ .++......
T Consensus 198 ~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~-~a~~~l~~~ 273 (336)
T 1p5q_A 198 SHLNLAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNK-AAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH-HHHHHHHHH
Confidence 3444555555666 6777777777777777777777777777777777777777777777752 33333 344344444
Q ss_pred HHHhCCHh
Q 013489 264 EREYGTLE 271 (442)
Q Consensus 264 E~~~G~~~ 271 (442)
....|..+
T Consensus 274 ~~~~~~~~ 281 (336)
T 1p5q_A 274 QQRIRRQL 281 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 289
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.3e-05 Score=62.08 Aligned_cols=100 Identities=12% Similarity=-0.010 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
....|...+......|+++.+...|+++|..+|.++.+|...+..+.. .+..+.+...|++|+...|.....|......
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 556788888888899999999999999999999999999999987764 4566789999999999999999999998775
Q ss_pred HHHccCCHHHHHHHHHHHHhCC
Q 013489 102 LERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~ 123 (442)
+. ..+..+++...|++++...
T Consensus 82 ~~-~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QI-AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHH
T ss_pred HH-HHhCHHHHHHHHHHHHHhC
Confidence 54 4788999999999999765
No 290
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.32 E-value=1.9e-05 Score=62.35 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=96.1
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|..++..+.. .++.+.+...|+
T Consensus 19 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~ 93 (136)
T 2fo7_A 19 EAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQ 93 (136)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 456778888877664 567888888888888999999999999999999999999998886664 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 83 RATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
+++...|....+|...+..+. ..++.+.+...|++++...+
T Consensus 94 ~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 94 KALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhCCCChHHHHHHHHHHH-HHccHHHHHHHHHHHHccCC
Confidence 999999999999988777444 47888999999999886543
No 291
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.2e-05 Score=67.11 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=90.7
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
+.+...|..........|+++.+..+|+++|..+|.+..+|......+.. .+..+.+...|++|+...|.....|..+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677899999988999999999999999999999999999999987764 45667899999999999999999999988
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 100 LSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 100 ~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
..+.. .++.+.+...|++++...+.
T Consensus 87 ~~~~~-~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFD-MADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHH-ccCHHHHHHHHHHHHHhCCC
Confidence 75554 78899999999999976555
No 292
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.30 E-value=3.4e-05 Score=67.31 Aligned_cols=115 Identities=9% Similarity=-0.033 Sum_probs=88.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHH----------------HHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMI----------------YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQY 66 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~----------------y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~ 66 (442)
+|...|+.+|...|. +...|.. .+......|+++.+...|+++|..+|.++..|...+..
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 22 QAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp HHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 456778888877653 7777777 77777889999999999999999999999999999987
Q ss_pred HHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhC
Q 013489 67 LDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERS-RASEEEISTVFEKSLLC 122 (442)
Q Consensus 67 l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~-~~~~~~~~~i~~~al~~ 122 (442)
+... +..+.+...|++++...|.....|......+... ......+...|.+++..
T Consensus 98 ~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T 3urz_A 98 QVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153 (208)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred HHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 7754 4567899999999999999999998877644322 12234456667776643
No 293
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.28 E-value=1.6e-06 Score=77.37 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=42.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSDVG-GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|||+|||+.+++++|+++|+.|| .|.+|+++.+ ++|||||+|.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~ 197 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMG 197 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEES
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEEC
Confidence 357999999999999999999999999 9999998664 3799999995
No 294
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=3.8e-05 Score=59.22 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
....|...+......|+++.+..+|++++...|.+..+|...+..+... ++.+.+...|++++...|....+|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4567888888888899999999999999999999999999998876644 566789999999999999999999988875
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhh
Q 013489 102 LERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
+.. .+..+.+...|++++...+..
T Consensus 82 ~~~-~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 82 LEF-LNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHH-TTCHHHHHHHHHHHHTTCTTC
T ss_pred HHH-HhhHHHHHHHHHHHHHcCCCC
Confidence 554 788999999999999877654
No 295
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.27 E-value=0.00023 Score=68.10 Aligned_cols=224 Identities=10% Similarity=-0.007 Sum_probs=137.3
Q ss_pred hhhHHHHHHhhcCCC--CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcch
Q 013489 3 NARAHLEEQISRQDL--SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-------DLWLDYTQYLDKTLKV 73 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~--~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~-------~lW~~Y~~~l~~~~~~ 73 (442)
+|...|+.++..... .++.....|...+......|+++.+...|++|+...+... ..+...+.... ..+.
T Consensus 121 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~ 199 (383)
T 3ulq_A 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQ 199 (383)
T ss_dssp HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcC
Confidence 355677777754221 1123456777777777888999999999999998644332 23333333222 3456
Q ss_pred hhHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-hhhHHHHHHHHHHHHHHH
Q 013489 74 GNVVRDVYSRATKNCPWVG------ELWVRSLLSLERSRASEEEISTVFEKSLLC-----A-FSTFEEYLDLFLTRIDGL 141 (442)
Q Consensus 74 ~~~~~~v~erAl~~~p~s~------~lW~~y~~~le~~~~~~~~~~~i~~~al~~-----~-~~~~~~~~~~~~~~~~~l 141 (442)
.+.+...|++|+..+|... .+|..... +....++.+.+...|++|+.. . +.....+..+-..+.
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--- 275 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL-CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY--- 275 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH---
Confidence 6789999999998664322 34555333 444578889999999999862 2 222222222111110
Q ss_pred HHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhchhHHH
Q 013489 142 RRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 142 ~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~~~~l~~~~~~~~ 218 (442)
.. .++......+++|+....... .+.....+...+.+....+ + +..|..++++. ...+....
T Consensus 276 --~~---------g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 276 --KL---------GKIDKAHEYHSKGMAYSQKAG--DVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp --HT---------TCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred --HC---------CCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHC-cCHHHHHH
Confidence 11 344555566677666543321 1222222344566666666 6 66666666665 23455567
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 219 AWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 219 ~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
++...+.+....|+++.|...|++|+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999863
No 296
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=3.2e-05 Score=61.22 Aligned_cols=105 Identities=16% Similarity=0.054 Sum_probs=90.7
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
+.....|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|++++...|....+|..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45778899999999999999999999999999999999999999887653 45667899999999999999999999988
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 100 LSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 100 ~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
..+. ..+..+.+...|++++...+..
T Consensus 92 ~~~~-~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 92 AALE-AMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHH-HHhhHHHHHHHHHHHHHhCCCc
Confidence 7554 4688999999999999776653
No 297
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.26 E-value=0.00027 Score=67.16 Aligned_cols=229 Identities=11% Similarity=-0.033 Sum_probs=117.4
Q ss_pred hhhHHHHHHhhcCCCCChH-hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH------HHHHHHHHHhcchhh
Q 013489 3 NARAHLEEQISRQDLSDSE-KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLW------LDYTQYLDKTLKVGN 75 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~-~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW------~~Y~~~l~~~~~~~~ 75 (442)
.++..++.+|...+..++. ....+..........|+++.+...|++++...|.....+ ..... +....++.+
T Consensus 32 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~G~~~ 110 (373)
T 1hz4_A 32 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE-ILFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHCCCHH
Confidence 3566777777766542221 112344445555667888888888888887654333221 11122 222345566
Q ss_pred HHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHHHHHHhh
Q 013489 76 VVRDVYSRATKNCP--------WVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFS-TFEEYLDLFLTRIDGLRRRIL 146 (442)
Q Consensus 76 ~~~~v~erAl~~~p--------~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~-~~~~~~~~~~~~~~~l~rr~~ 146 (442)
.+...|++++...+ .....+..... +....++.+++...+++++..... ........+... ..+...
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l-a~~~~~-- 186 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ-LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML-IQCSLA-- 186 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH-HHHHHH--
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH-HHHHHH--
Confidence 78888888887542 12223333333 333467888888888888854321 000011111000 000000
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHhchhH----HHHH
Q 013489 147 FSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLY--AYWAHLEQSMGKDMVSARGVWERLLKISGAM----LEAW 220 (442)
Q Consensus 147 ~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~--~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~----~~~w 220 (442)
..++......++++....... ..+...... ...+.+....| +++.|+..+.+++...+.. ...+
T Consensus 187 -------~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 187 -------RGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp -------HTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred -------cCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 023334444455554432211 011111111 11223344566 7888888888877654321 2345
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 221 QSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 221 ~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..++......|+++.|..++++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677777778888888888887753
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.7e-05 Score=66.26 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=86.2
Q ss_pred chhhHHHHHHhhc--CCCCChHhHHHHHHHHHHHHhc---CCh---hhHH-HHHHHHHhcCCC---------CHHHHHHH
Q 013489 2 CNARAHLEEQISR--QDLSDSEKFQQYMIYLKYEQSS---GDP---GRVQ-LLYERAITDFPV---------SSDLWLDY 63 (442)
Q Consensus 2 ~~~r~~yE~~l~~--~~~~~~~~~~~w~~y~~~e~~~---g~~---~~~~-~lyERal~~~p~---------~~~lW~~Y 63 (442)
...|..||..|.. ... .+-++.|..||.|.... |.. .... .++|||+..+-. ...+|+.|
T Consensus 9 ~~~r~~fE~~l~~~l~~~--dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDM--DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHTGGGC--SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccC--CCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 3578999999988 332 23478899999998754 332 2344 799999985443 34799999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 64 TQYLDKTLKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 64 ~~~l~~~~~~~~~~~~v~erAl~~--~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
+.++.. ++......+|....++ .-....+|..|+.++|. .++...+..||+.+++..
T Consensus 87 a~~~~~--~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 87 INLFLS--NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHST--TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred HHhhcc--cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 998621 1122356788877773 35678999999999997 688999999999999764
No 299
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=4.7e-05 Score=69.43 Aligned_cols=187 Identities=7% Similarity=-0.082 Sum_probs=131.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHhcchhhHHHHHHHHHHHcCCC-----------------
Q 013489 35 SSGDPGRVQLLYERAITDFPVSSDLWLDY-------TQYLDKTLKVGNVVRDVYSRATKNCPW----------------- 90 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~~~p~~~~lW~~Y-------~~~l~~~~~~~~~~~~v~erAl~~~p~----------------- 90 (442)
..+++..+...|.+++..+|...+.|+.. ...+..... ...+...+.|++..-|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 46899999999999999999999999999 444443222 23345677777763332
Q ss_pred ----cHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHH
Q 013489 91 ----VGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQR 166 (442)
Q Consensus 91 ----s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~ 166 (442)
-..++..|+..+-. .+..+++..+|..++..++... . .|..-+-++ +. .+ +..
T Consensus 97 ~v~~r~dl~LayA~~L~~-~g~y~eA~~~l~~~~~~~p~~~-~---~~~~a~l~~--~~---------~r-------~~d 153 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAA-QGNYADAMEALEAAPVAGSEHL-V---AWMKAVVYG--AA---------ER-------WTD 153 (282)
T ss_dssp ECSSHHHHHHHHHHHHHH-HTCHHHHHHHHTSSCCTTCHHH-H---HHHHHHHHH--HT---------TC-------HHH
T ss_pred ccCCHhHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCchH-H---HHHHHHHHH--Hc---------CC-------HHH
Confidence 14688889885554 6889999999998776555433 1 111111001 00 22 344
Q ss_pred HHHHHhhhhcCchhh--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--hh-HHHHHHHHHHHHHhcccHHHHHHHHH
Q 013489 167 ASDYLSEQMKNTDGL--LRLYAYWAHLEQSMGKDMVSARGVWERLLKIS--GA-MLEAWQSYISMEIELDHINEARSIYK 241 (442)
Q Consensus 167 a~~~l~~~~~~~~~~--~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~--~~-~~~~w~~~~~~e~~~g~~~~ar~i~~ 241 (442)
++.++.......++. ..++.+.......+| +++.|...|++++... |. ..+.++......+..|+.+.|+.+|+
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455554443322232 347788888888999 9999999999999653 66 67899999999999999999999999
Q ss_pred HHHhc
Q 013489 242 RCYSK 246 (442)
Q Consensus 242 ral~~ 246 (442)
+++..
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99973
No 300
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=2.1e-06 Score=67.28 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCceEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKAT-----------YEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|+|.||..... +++|+.+|++||.|.+|.| .++ .++|||||+|.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~ 72 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFR 72 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEEC
Confidence 356999999944432 5799999999999999955 553 27999999995
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=98.26 E-value=4.6e-05 Score=62.94 Aligned_cols=110 Identities=15% Similarity=0.274 Sum_probs=82.0
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc---CChh-hHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHh
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDPG-RVQLLYERAITDFPVSS---------DLWLDYTQYLDKT 70 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~---g~~~-~~~~lyERal~~~p~~~---------~lW~~Y~~~l~~~ 70 (442)
.|..||..|..... .+-++.|..||.|.... |... ....++|||+..+..+. .+|+.|+.+.
T Consensus 2 ~r~~fE~~i~~~~g--dDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 76 (164)
T 2wvi_A 2 QKRAFEYEIRFYTG--NDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC--- 76 (164)
T ss_dssp CTHHHHHHCCCCCS--SCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHhhcCC--CCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---
Confidence 47789999974333 23478899999998753 3332 45779999999765443 6999999874
Q ss_pred cchhhHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 71 LKVGNVVRDVYSRATK--NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~--~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
.+ ...+|....+ ..-....+|..|+.++|. .++...+..||..++...
T Consensus 77 -~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQK 126 (164)
T ss_dssp -SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred -CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 22 3567777776 346678999999999997 689999999999999764
No 302
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.26 E-value=9.5e-05 Score=68.19 Aligned_cols=213 Identities=12% Similarity=0.118 Sum_probs=127.5
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHccCCHHH
Q 013489 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW------VGELWVRSLLSLERSRASEEE 111 (442)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~------s~~lW~~y~~~le~~~~~~~~ 111 (442)
+++.+..+|+++... + ...+..+.+...|.+|+...+. ....|..... +....++.++
T Consensus 32 ~~~~A~~~~~~a~~~--------------~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQAATI--------------Y-RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK-CFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHHHH--------------H-HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHH--------------H-HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHCCCHHH
Confidence 378888889888431 1 2335567788899999886422 2356666555 4444688899
Q ss_pred HHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHH
Q 013489 112 ISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWA 189 (442)
Q Consensus 112 ~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a 189 (442)
+...|++|+...+. ........+.. +..+.... ..++......|++|+.+....- .......++...+
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~-lg~~~~~~--------lg~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg 165 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFE-LGEILEND--------LHDYAKAIDCYELAGEWYAQDQ-SVALSNKCFIKCA 165 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHT--------TCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHh--------hcCHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 99999999865322 11111111111 11110010 0344455566777776543210 1111245778889
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhchhHH-------HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHH----HHH
Q 013489 190 HLEQSMGKDMVSARGVWERLLKISGAML-------EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSED----ICH 258 (442)
Q Consensus 190 ~~e~~~~~~~~~ar~i~~~~l~~~~~~~-------~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~----i~~ 258 (442)
.+....| +++.|..+|++++...|+.. ..|...+.+....|+++.|...|++++.. .++.+.. ++.
T Consensus 166 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 166 DLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHH
T ss_pred HHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHH
Confidence 9999999 99999999999999866432 26777778888889999999999999862 2222211 111
Q ss_pred HHHHHHHHhCCHhhHHHHHHhh
Q 013489 259 AWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 259 ~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
...... ..|+.+.++.++...
T Consensus 243 ~l~~~~-~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 243 SLIDAV-NEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHH-HTTCTTTHHHHHHHH
T ss_pred HHHHHH-HcCCHHHHHHHHHHh
Confidence 111111 236777777777655
No 303
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.25 E-value=1.5e-07 Score=72.74 Aligned_cols=45 Identities=4% Similarity=0.078 Sum_probs=38.4
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 396 LSNINLKATYEDLRRFF------------SDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 396 v~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+++||+.+++++|++.| ++||.|.+|.|+.++ +|+++|||||+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~ 76 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFR 76 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEES
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEEC
Confidence 56788888888777766 999999999999984 6899999999995
No 304
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.24 E-value=5.2e-05 Score=59.55 Aligned_cols=105 Identities=16% Similarity=0.046 Sum_probs=89.9
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSL 99 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~ 99 (442)
+.+...|...+......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|++++...|....+|....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45677888888888889999999999999999999999999999887764 45667899999999999999999998887
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 100 LSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 100 ~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
..+. ..++.+.+...|++++...+..
T Consensus 88 ~~~~-~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 88 LALS-SLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHH-HhCCHHHHHHHHHHHHhcCccc
Confidence 7554 4788999999999999876654
No 305
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.24 E-value=4.4e-05 Score=71.89 Aligned_cols=222 Identities=9% Similarity=-0.036 Sum_probs=142.9
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-hhhHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSG-DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK-VGNVVRDVY 81 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g-~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~-~~~~~~~v~ 81 (442)
+-..++.+|..+|. ++.+|..=.......| +++..+.+++.+|..+|.+..+|..-.-.+....+ ..+.....+
T Consensus 73 AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 73 ALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 44567888888876 8899987777777777 58999999999999999999999998877765523 556778999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHccCCH-------HHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCccc
Q 013489 82 SRATKNCPWVGELWVRSLLSLERSRASE-------EEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVE 152 (442)
Q Consensus 82 erAl~~~p~s~~lW~~y~~~le~~~~~~-------~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~~~ 152 (442)
++++...|.+...|....-.+....... .+....+++++...+.+ .|.+..+.+.. .....
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~-------l~~~~--- 218 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS-------RPGAE--- 218 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT-------STTCC---
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------ccccc---
Confidence 9999999999999988665444322211 24555667777666553 33333222111 10000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCC-------------------HHHHHHHHHHHHHhc
Q 013489 153 GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD-------------------MVSARGVWERLLKIS 213 (442)
Q Consensus 153 ~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~-------------------~~~ar~i~~~~l~~~ 213 (442)
. ....++++++++..++...+.....|.+..-+....+.. .....++...++...
T Consensus 219 --~----~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 219 --T----SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp --C----CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred --c----chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 0 024466777777666665666677888876666666533 222222322222221
Q ss_pred ------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 214 ------GAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 214 ------~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+.+.-++--.+++....|+.++|..+|+....
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 23444566666666677888999999999765
No 306
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.24 E-value=0.0004 Score=66.38 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=123.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc---CCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH-------HHH
Q 013489 29 YLKYEQSSGDPGRVQLLYERAITD---FPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG-------ELW 95 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~~---~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~-------~lW 95 (442)
.+.+....|+++.+...|++|+.. .+.. ..+|...+.... ..++.+.+...|.+|+..++... .++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 344456679999999999999986 3332 345555555444 34566789999999999764332 233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhh
Q 013489 96 VRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (442)
Q Consensus 96 ~~y~~~le~~~~~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~ 173 (442)
..... +....+..+.+...|++|+...... .......+. .+..+.... .++......|++|+.+...
T Consensus 188 ~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~---------g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 188 SLFAT-NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY-NIGLCKNSQ---------SQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHT---------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHC---------CCHHHHHHHHHHHHHHHHh
Confidence 33333 4445788999999999999643221 111111111 111111111 3455555666666665433
Q ss_pred hhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccc---HHHHHHHHHHH
Q 013489 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDH---INEARSIYKRC 243 (442)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~-----~~~~~w~~~~~~e~~~g~---~~~ar~i~~ra 243 (442)
.. ..+.....+...+.+....| +++.|...+++++...+ .....+.....+....|+ +..|..+++++
T Consensus 257 ~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 257 SN-ILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp TT-CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hc-cchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 21 11445677888899989999 99999999999998742 222233445555566677 66666666665
No 307
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.23 E-value=1.5e-05 Score=63.75 Aligned_cols=93 Identities=13% Similarity=-0.044 Sum_probs=81.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|...+......|+++.+...|+++|..+|.++..|...+..+.. .+..+.+...|+
T Consensus 31 ~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~ 105 (126)
T 4gco_A 31 TAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 467789999988876 788999999999999999999999999999999999999999987764 456688999999
Q ss_pred HHHHcCCCcHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLL 100 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~ 100 (442)
+|+...|....++..+..
T Consensus 106 ~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 106 DALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHHCcCCHHHHHHHHH
Confidence 999999999888877543
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=98.21 E-value=3.6e-05 Score=62.65 Aligned_cols=110 Identities=14% Similarity=0.231 Sum_probs=85.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc---CChhhHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHh
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GDPGRVQLLYERAITDFPVS---------SDLWLDYTQYLDKT 70 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~---g~~~~~~~lyERal~~~p~~---------~~lW~~Y~~~l~~~ 70 (442)
..|..||..|......| -++.|..||.|.... |. .....++|||+..+..+ ..+|+.|+.+..
T Consensus 8 ~~~~~fE~~i~~y~gdD--PL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~-- 82 (152)
T 4a1g_A 8 NVLQMLEAHMQSYKGND--PLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNS-- 82 (152)
T ss_dssp HHHHHHHHHTTSCCSSC--HHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS--
T ss_pred HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcC--
Confidence 36788999998864323 477899999999864 33 34678999999865433 369999998632
Q ss_pred cchhhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 71 LKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~~--~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
+ ...+|....++ .-....+|..|+.++|. .++...+..||+.+++..
T Consensus 83 --d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 83 --D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp --C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTT
T ss_pred --C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 2 46788887773 35678999999999997 689999999999999764
No 309
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.19 E-value=0.0001 Score=65.02 Aligned_cols=177 Identities=11% Similarity=-0.026 Sum_probs=108.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHH---HHHHHHHHHH----------
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDL---WLDYTQYLDK---------- 69 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~l---W~~Y~~~l~~---------- 69 (442)
+|...|+..|...|.. +.....|...+......|+++.+...|++++..+|.++.+ |..-......
T Consensus 22 ~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 22 QAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 4677899999877642 2234567777777788999999999999999999998753 3222221111
Q ss_pred -------hcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013489 70 -------TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLR 142 (442)
Q Consensus 70 -------~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~ 142 (442)
..+..+.+...|++++...|.+...|..+...... ...... ....+... + .
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~--------~~~~~~--------~~~~~a~~--~---~- 158 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL--------KDRLAK--------YEYSVAEY--Y---T- 158 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH--------HHHHHH--------HHHHHHHH--H---H-
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH--------HHHHHH--------HHHHHHHH--H---H-
Confidence 12456779999999999999998777654431111 000000 00000000 0 0
Q ss_pred HHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH
Q 013489 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML 217 (442)
Q Consensus 143 rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~ 217 (442)
+ ..++......|++++.... ..+...+.+...+......| +.+.|...++.+....|++.
T Consensus 159 -~---------~~~~~~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g-~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 159 -E---------RGAWVAVVNRVEGMLRDYP----DTQATRDALPLMENAYRQMQ-MNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -H---------HTCHHHHHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCCSCCC
T ss_pred -H---------cCcHHHHHHHHHHHHHHCc----CCCccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhCCCch
Confidence 0 0233333344444443211 12223467888888888999 99999999999988777643
No 310
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.2e-05 Score=61.59 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=86.8
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCC--cHHHHHHH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPW--VGELWVRS 98 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~--s~~lW~~y 98 (442)
.+...|...+......|+++.+..+|++++...|.+..+|..++..+... +..+.+...|++++...|. ...+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 35567777888788899999999999999999999999999998877644 4567899999999999999 99999988
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHhCChh
Q 013489 99 LLSLERSR-ASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 99 ~~~le~~~-~~~~~~~~i~~~al~~~~~ 125 (442)
... .... +..+.+...|++++...+.
T Consensus 83 ~~~-~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADA-LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHH-HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHH-HHHHhCCHHHHHHHHHHHhhcccC
Confidence 774 4457 8889999999999876543
No 311
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.18 E-value=1.1e-05 Score=66.35 Aligned_cols=77 Identities=1% Similarity=-0.157 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013489 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (442)
Q Consensus 44 ~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~ 122 (442)
..|++++..+|.+...|...+..+... +..+.+...|++++...|....+|......+. ..+..+++...|++++..
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 357777777777777777777666543 34566777888888877877777776655333 356666666666666543
No 312
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.18 E-value=1.9e-06 Score=66.49 Aligned_cols=51 Identities=24% Similarity=0.018 Sum_probs=41.6
Q ss_pred CceEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeeCCCC--CCCcceEEEEee
Q 013489 391 ECTAFLSNI--NLKAT--------YEDLRRFFSDVGGVSSIRILHDKFT--GKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~~fv~f~ 441 (442)
.+.|.+.|+ |.... .++|+..|++||.|.+|.|++++.+ ++++|||||+|.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~ 67 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFT 67 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEES
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEEC
Confidence 458899997 33333 3689999999999999999998654 478999999996
No 313
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=0.00029 Score=57.97 Aligned_cols=104 Identities=10% Similarity=-0.089 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
....|...+......|+++.+...|++++...|.+..+|...+..+.. .++.+.+...|++++...|....+|......
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 455788888888889999999999999999999999999999887664 4566789999999999999999999988775
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhH
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTF 127 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~ 127 (442)
+. ..+..+.+...|++++...+...
T Consensus 91 ~~-~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 91 NM-ALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HH-HhccHHHHHHHHHHHHHhCCCCH
Confidence 54 47889999999999998766543
No 314
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=2.7e-05 Score=62.42 Aligned_cols=102 Identities=13% Similarity=-0.075 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
+...|...+......|+++.+..+|+++|..+|.+..+|..++..+.. .++.+.+...|++++...|.....|......
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 667899999988999999999999999999999999999999987764 4566789999999999999999999998875
Q ss_pred HHHccCCHHHHHHHHHHHHhCChh
Q 013489 102 LERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
+.. .++.+.+...|++++...+.
T Consensus 87 ~~~-~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLE-MESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHHHHHHHHHHChh
Confidence 554 78899999999999975443
No 315
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=2.3e-05 Score=62.10 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
.|...+......|+++.+...|+++|..+|.+...|......+.. .+..+.+...|++|+...|.....|......+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~- 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 466666667788999999999999999999999999998887664 456677999999999999999999988776444
Q ss_pred ccCCHHHHHHHHHHHHhCChh
Q 013489 105 SRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~~~~ 125 (442)
..+..+++...|++++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 367788999999999976553
No 316
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=1.7e-05 Score=64.53 Aligned_cols=77 Identities=4% Similarity=-0.158 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013489 44 LLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (442)
Q Consensus 44 ~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~ 122 (442)
..|++++...|.+...|...+..+... +..+.+...|++++...|....+|......+. ..+..+.+...|++++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 356777777777777777776655543 44566777888888877877777777655333 356666666666666543
No 317
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.15 E-value=0.00014 Score=67.02 Aligned_cols=168 Identities=9% Similarity=-0.084 Sum_probs=115.1
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHH
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQ 165 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~ 165 (442)
...|.....+......+. ..++.+.+..+|++++...+.....++.+-..+. ..+.++
T Consensus 111 ~~lp~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~---------------------~~g~~~ 168 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI---------------------ALNRSE 168 (287)
T ss_dssp HHSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---------------------HTTCHH
T ss_pred HHcCCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH---------------------HCCCHH
Confidence 345888888877776444 3688999999999999887776554433332211 113356
Q ss_pred HHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 166 RASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 166 ~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+|...+.......+.....+..........+ ..+.|...|++++..+|++..+|..++......|+++.|...|.+++.
T Consensus 169 ~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~-~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 169 DAEAVLXTIPLQDQDTRYQGLVAQIELLXQA-ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhhcchHHHHHHHHHHHHhhc-ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6777766655433332222222222233444 567789999999999999999999999999999999999999999998
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCHhhHHHHH
Q 013489 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSV 277 (442)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~ 277 (442)
.. +.......+..........|..+......
T Consensus 248 ~~-p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 248 XD-LTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HC-TTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cc-cccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 42 32222567788888888888765544333
No 318
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.15 E-value=0.00065 Score=61.51 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCCCHH-------HHHHHHH-HHHHhc------------chhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 013489 43 QLLYERAITDFPVSSD-------LWLDYTQ-YLDKTL------------KVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (442)
Q Consensus 43 ~~lyERal~~~p~~~~-------lW~~Y~~-~l~~~~------------~~~~~~~~v~erAl~~~p~s~~lW~~y~~~l 102 (442)
..+||-.|..+|.+.. +...|+. |+.... .+...+..+|.||.... ++.|
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~----------~raL 121 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA----------LSSL 121 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH----------HHHH
Confidence 5678999999999874 6777766 444211 12345677777776621 2234
Q ss_pred HHccCCHH-HHH----HHHHHHH-hCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhc
Q 013489 103 ERSRASEE-EIS----TVFEKSL-LCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (442)
Q Consensus 103 e~~~~~~~-~~~----~i~~~al-~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~ 176 (442)
+..+..+. .++ .-+..++ .+.+..+...+-.-..+.... .. ....+.........+..+++|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a--~~-~~gg~~Al~~l~~A~a~lerAleL------ 192 (301)
T 3u64_A 122 ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAF--AL-TPLGSALPDTVHAAVMMLERACDL------ 192 (301)
T ss_dssp HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHH--TT-SCTTSCCHHHHHHHHHHHHHHHHH------
T ss_pred HHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHH--hc-CCCChHHHHhHHHHHHHHHHHHHh------
Confidence 43323222 111 2244444 234443333221111111111 11 112223334555666777777774
Q ss_pred Cchh--hHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHhc-ccHHHHHHHHHHHHhc
Q 013489 177 NTDG--LLRLYAYWAHLEQSM----GKDMVSARGVWERLLKISGAM-LEAWQSYISMEIEL-DHINEARSIYKRCYSK 246 (442)
Q Consensus 177 ~~~~--~~~l~~~~a~~e~~~----~~~~~~ar~i~~~~l~~~~~~-~~~w~~~~~~e~~~-g~~~~ar~i~~ral~~ 246 (442)
.+. .-..|..++.++... +++.++|+..|+++|..+|+. ...+..|++|.... |+.+.++..+++|+..
T Consensus 193 -DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 193 -WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred -CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 333 224788888888885 459999999999999999976 99999999999875 8999999999999973
No 319
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=0.00013 Score=56.70 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSL 102 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~l 102 (442)
...|...+......|+++.+..+|++++...|.+..+|..++..+... +..+.+...|++++...|....+|...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567888888888899999999999999999999999999998877644 5667899999999999999999998887755
Q ss_pred HHccCCHHHHHHHHHHHHhCChhhH
Q 013489 103 ERSRASEEEISTVFEKSLLCAFSTF 127 (442)
Q Consensus 103 e~~~~~~~~~~~i~~~al~~~~~~~ 127 (442)
. ..++.+.+...|++++...+...
T Consensus 88 ~-~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 Y-KQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred H-HhcCHHHHHHHHHHHHHhCCCcH
Confidence 4 46889999999999998766543
No 320
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=2.6e-06 Score=66.81 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLK-ATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...+.|||+||+.. ++.++|+.+|+.||.|..|.++.+.. .|||.|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~ 63 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFK 63 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEES
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEEC
Confidence 45679999999999 99999999999999999999999853 5999995
No 321
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=2.3e-05 Score=74.12 Aligned_cols=151 Identities=8% Similarity=-0.012 Sum_probs=94.7
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc---------------HHHHHHHHHHH
Q 013489 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---------------GELWVRSLLSL 102 (442)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s---------------~~lW~~y~~~l 102 (442)
+++.+...|++++...|.+...|......+... +..+.+...|++|+...|.. ..+|..+...+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE-GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544432 23344555555555555554 46777766533
Q ss_pred HHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhH
Q 013489 103 ERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLL 182 (442)
Q Consensus 103 e~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~ 182 (442)
. ..+..+++...|++++...+.. .
T Consensus 207 ~-~~g~~~~A~~~~~~al~~~p~~-------------------------------------------------------~ 230 (336)
T 1p5q_A 207 L-KLQAFSAAIESCNKALELDSNN-------------------------------------------------------E 230 (336)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTTC-------------------------------------------------------H
T ss_pred H-HcCCHHHHHHHHHHHHHhCCCc-------------------------------------------------------H
Confidence 3 4677888888888877643331 1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHH-HHHHHHHHhc
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEA-RSIYKRCYSK 246 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~a-r~i~~ral~~ 246 (442)
..|...+.+....| +++.|...|++++...|++..+|.....+....|+++.+ +.+|++++..
T Consensus 231 ~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 231 KGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445556667 888888888888888888888888888888888877766 6677777653
No 322
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.12 E-value=0.001 Score=61.05 Aligned_cols=162 Identities=11% Similarity=-0.028 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHcCCCcHH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHh
Q 013489 73 VGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRI 145 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~-----lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~ 145 (442)
+.+.+..+|++++...+.... .|...+..+....++.+.+...|++|+..... .....+.++. .+..+....
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~ 168 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN-AIANIYAEN 168 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH-HHHHHHHHT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHHHc
Confidence 445566666666665554433 13332333443344666677777777753221 1110011110 000110011
Q ss_pred hccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH------HHH
Q 013489 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM------LEA 219 (442)
Q Consensus 146 ~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~------~~~ 219 (442)
.++......|++|+..+.......+....++...+.+....| +++.|...+++++...+.. ..+
T Consensus 169 ---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 169 ---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 234444555666665544332223334567788888888999 9999999999999885433 568
Q ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 013489 220 WQSYISMEIELD-HINEARSIYKRCYS 245 (442)
Q Consensus 220 w~~~~~~e~~~g-~~~~ar~i~~ral~ 245 (442)
|..........| +++.|...|++|+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888889 57999999999985
No 323
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=0.00015 Score=73.46 Aligned_cols=176 Identities=10% Similarity=0.048 Sum_probs=129.5
Q ss_pred HhcCC-hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 34 QSSGD-PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKV---------GNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 34 ~~~g~-~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~---------~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
...|. .++|..+|+++|..+|.+..+|..-...+.....+ .+.+...+++++...|.+..+|....-.+.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444 46889999999999999999999887777654332 566889999999999999999999877666
Q ss_pred HccC--CHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCch
Q 013489 104 RSRA--SEEEISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTD 179 (442)
Q Consensus 104 ~~~~--~~~~~~~i~~~al~~~~~~~--~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~ 179 (442)
. .+ ..++....+++++...+.++ |.+..+.... +. ..+++++++...++..++
T Consensus 119 ~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-------l~---------------~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 119 R-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-------AA---------------VAPAEELAFTDSLITRNF 175 (567)
T ss_dssp T-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TC---------------CCHHHHHHHHHTTTTTTC
T ss_pred H-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-------cC---------------CChHHHHHHHHHHHHHCC
Confidence 5 45 45778899999998777643 3333222111 10 024567777777777677
Q ss_pred hhHHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Q 013489 180 GLLRLYAYWAHLEQSMG-------------KDMVSARGVWERLLKISGAMLEAWQSYISMEIELDH 232 (442)
Q Consensus 180 ~~~~l~~~~a~~e~~~~-------------~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~ 232 (442)
.....|.+-..+...++ +.++.+.+.+.+++..+|++..+|..+.-+....+.
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 77778888776665541 146899999999999999999999988777765554
No 324
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.08 E-value=9.3e-05 Score=61.13 Aligned_cols=108 Identities=8% Similarity=-0.019 Sum_probs=82.2
Q ss_pred HHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Q 013489 169 DYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRF 248 (442)
Q Consensus 169 ~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~ 248 (442)
..+...+...|.....|...+......| +++.|..+|++++..+|++..+|..........|+++.|...|++|+. +
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l 99 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKG-RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--L 99 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--h
Confidence 3445555556777778888888888888 899999999999999999999999999999999999999999999997 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 249 TGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 249 ~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
.++.+. .|......-...|+.+.-..+++++
T Consensus 100 ~P~~~~-~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 100 GKNDYT-PVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp SSSCCH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556664 3434444455567766555444443
No 325
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00024 Score=60.47 Aligned_cols=102 Identities=11% Similarity=0.261 Sum_probs=78.9
Q ss_pred HHHHHHHHHHh--hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ch-hHHHHHHHHHHHHHhcccHHHHH
Q 013489 162 ETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 162 ~~~~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~-~~~~~w~~~~~~e~~~g~~~~ar 237 (442)
..+++|+..+. ..+.+.+..+++|+.||++. ..++...++.+|.-+... -+ ..+.+|..|+.+....|++..|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 56677777653 33445666789999999865 122578999999999987 44 44679999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013489 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (442)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (442)
.||+.++.+.. ...+.|-.++.+|++..
T Consensus 136 ~Vy~~GI~~~A--~P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 136 VLLELGAENNC--RPYNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHTTC--BSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--ccHHHHHHHHHHHHHHH
Confidence 99999998642 23567888999998774
No 326
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.07 E-value=0.01 Score=58.74 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHh
Q 013489 198 DMVSARGVWERLLKISGAMLEAWQSYISMEIEL-----DHINEARSIYKRCYS 245 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~-----g~~~~ar~i~~ral~ 245 (442)
+.+.|...|++++... +...+.....+.... ++++.|...|++|+.
T Consensus 274 d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp CHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 5666666666665441 223333333333333 456666666666654
No 327
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.07 E-value=0.0013 Score=60.41 Aligned_cols=162 Identities=10% Similarity=-0.036 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHHcCCCcHH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHHHHHHh
Q 013489 73 VGNVVRDVYSRATKNCPWVGE-----LWVRSLLSLERSRASEEEISTVFEKSLLCAFST--FEEYLDLFLTRIDGLRRRI 145 (442)
Q Consensus 73 ~~~~~~~v~erAl~~~p~s~~-----lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~--~~~~~~~~~~~~~~l~rr~ 145 (442)
+.+.+...|.+++...|.... .|..++..+....++.+.+...|++++...... .......+.. +..+....
T Consensus 90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-lg~~y~~~ 168 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA-IANIYAEN 168 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH-HHHHHHHT
T ss_pred hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHHHc
Confidence 445567777777776554321 333334334444567777777788877532210 0000111100 00110011
Q ss_pred hccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh------HHHH
Q 013489 146 LFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEA 219 (442)
Q Consensus 146 ~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~------~~~~ 219 (442)
.++......|++|+...............++...+.+....| +++.|...+++++...++ ...+
T Consensus 169 ---------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 169 ---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344455566666665544322111112357777888888889 999999999999988543 2568
Q ss_pred HHHHHHHHHhcccHHHH-HHHHHHHHh
Q 013489 220 WQSYISMEIELDHINEA-RSIYKRCYS 245 (442)
Q Consensus 220 w~~~~~~e~~~g~~~~a-r~i~~ral~ 245 (442)
+.....+....|+++.| ...|++|+.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888888899999999 888999985
No 328
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.03 E-value=0.0097 Score=58.84 Aligned_cols=111 Identities=10% Similarity=-0.088 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhh
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQS----SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGN 75 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~----~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~ 75 (442)
++...|+.++... +...+..+...... .++++.+...|++++.. .++..+.......... .++.+
T Consensus 97 ~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 97 QAVIWYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 3455666665442 22333334433333 45666666667666654 3455555555444321 23445
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhCC
Q 013489 76 VVRDVYSRATKNCPWVGELWVRSLLSLER---SRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 76 ~~~~v~erAl~~~p~s~~lW~~y~~~le~---~~~~~~~~~~i~~~al~~~ 123 (442)
.+...|++|+.. .....|......+.. ..++.+.+...|++++..+
T Consensus 169 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 169 MAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 566666666663 233444443332222 0345556666666666543
No 329
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.02 E-value=0.00011 Score=60.69 Aligned_cols=111 Identities=12% Similarity=-0.170 Sum_probs=86.3
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.+...|+.++...|. +...|..++......|+++.+...|++++..+|.+...|...+..+... +..+.+...|+
T Consensus 31 ~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~ 105 (166)
T 1a17_A 31 NAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 466788888888775 6778999999888999999999999999999999999999998877644 56678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHH-HHccCCHHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSL-ERSRASEEEISTVFEK 118 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~l-e~~~~~~~~~~~i~~~ 118 (442)
+++...|....+|..+.... ....+..+++...+++
T Consensus 106 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 106 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999988886554321 1123344444444444
No 330
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.02 E-value=4.1e-06 Score=66.02 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=41.7
Q ss_pred CceEEEcCCCC--C---CCHHHHHHHhccCCCeeEEEEeeCCC----CCCCcceEEEEee
Q 013489 391 ECTAFLSNINL--K---ATYEDLRRFFSDVGGVSSIRILHDKF----TGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~--~---~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~~fv~f~ 441 (442)
.++|++.|+-. + --+++|+..|++||.|.+|.|+.++. +++++|||||+|.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~ 79 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS 79 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEEC
Confidence 34899999832 1 23689999999999999999999854 4678899999996
No 331
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.01 E-value=0.0016 Score=59.84 Aligned_cols=208 Identities=10% Similarity=-0.057 Sum_probs=127.8
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 013489 41 RVQLLYERAITDFPVSSDLWLDYTQYLDKT-LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKS 119 (442)
Q Consensus 41 ~~~~lyERal~~~p~~~~lW~~Y~~~l~~~-~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~a 119 (442)
.+..++..|-...+.+..+| .|. ... .+..+.+...|++|.. +....+..+++...|++|
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KLF---SGSDSYKFEEAADLCVQAAT---------------IYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HHH---SCCSHHHHHHHHHHHHHHHH---------------HHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hhc---CCCCCccHHHHHHHHHHHHH---------------HHHHcCCHHHHHHHHHHH
Confidence 45667777777777766777 443 211 1235668888888833 122357888899999998
Q ss_pred HhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHc-C
Q 013489 120 LLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM-G 196 (442)
Q Consensus 120 l~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~-~ 196 (442)
+..... ........+... ..+.... .++......|++|+.+.... .........+...+.+.... |
T Consensus 64 l~~~~~~~~~~~~a~~~~~l-g~~~~~~---------g~~~~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEA-YKCFKSG---------GNSVNAVDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHHHT---------TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHH-HHHHHHC---------CCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhc
Confidence 864211 111111111111 1111111 34555566777777765321 11222345777788888885 8
Q ss_pred CCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH---H---HHHHHHHHH
Q 013489 197 KDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE---D---ICHAWLRFE 264 (442)
Q Consensus 197 ~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~---~---i~~~~~~fE 264 (442)
+++.|...|++++..+|.. ..+|...+.+....|+++.|..+|++++... ++.+. . .+......-
T Consensus 133 -~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 133 -DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--SSCTTTGGGHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--hcCCcccHHHHHHHHHHHHHH
Confidence 9999999999999987643 4678899999999999999999999999742 22221 1 233333334
Q ss_pred HHhCCHhhHHHHHHhhc
Q 013489 265 REYGTLEDFDHSVQKVT 281 (442)
Q Consensus 265 ~~~G~~~~~~~~~~~~~ 281 (442)
...|+.+.-..+++++.
T Consensus 210 ~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHTTCHHHHHHHHHGGG
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 45677766666666554
No 332
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00013 Score=58.94 Aligned_cols=104 Identities=13% Similarity=-0.016 Sum_probs=88.3
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHH
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~ 96 (442)
+.+...|...+......|+++.+..+|++++...|.+ ..+|..++..+.. .++.+.+...|++++...|....+|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3467789999998889999999999999999999987 8888888876654 45667899999999999999999998
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 97 RSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 97 ~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
.+...+.. .+..+.+...|++++...+.
T Consensus 104 ~~a~~~~~-~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 104 RRSQALEK-LGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 87775544 68899999999999977655
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.98 E-value=0.00011 Score=63.57 Aligned_cols=112 Identities=17% Similarity=0.319 Sum_probs=84.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhc---CC--hhhHHHHHHHHHhcCCCC---------HHHHHHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSS---GD--PGRVQLLYERAITDFPVS---------SDLWLDYTQYLD 68 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~---g~--~~~~~~lyERal~~~p~~---------~~lW~~Y~~~l~ 68 (442)
..|..||..|.....+ .+-++.|..||.|.... |. -.....++|||+..+..+ ..+|+.|+.+.
T Consensus 53 ~~r~~fE~~i~~~~~~-dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~- 130 (223)
T 4aez_C 53 KERMGHERKIETSESL-DDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI- 130 (223)
T ss_dssp HHHHHHHHHHHHGGGS-SCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc-
Confidence 4688999999873111 12478899999998764 32 224678999999976554 36999999863
Q ss_pred HhcchhhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 69 KTLKVGNVVRDVYSRATKN--CPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 69 ~~~~~~~~~~~v~erAl~~--~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
.+ ...+|....++ .-....+|..|+.++|. .++...+..||+.+++..
T Consensus 131 ---~~---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 ---DE---PVELFSFLAHHHIGQESSIFYEEYANYFES-RGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp ---SC---HHHHHHHHHHTTCSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred ---CC---HHHHHHHHHHCCcchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Confidence 22 45788877773 35678999999999997 689999999999999653
No 334
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=0.0001 Score=56.63 Aligned_cols=93 Identities=13% Similarity=-0.058 Sum_probs=80.0
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.++.+|..++..+.. .+..+.+...|+
T Consensus 22 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~ 96 (118)
T 1elw_A 22 DALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRTYE 96 (118)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 456778888887775 677899999888889999999999999999999999999999887764 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLL 100 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~ 100 (442)
+++...|....+|..+..
T Consensus 97 ~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 97 EGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 999999999988887665
No 335
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.97 E-value=9.7e-05 Score=58.35 Aligned_cols=93 Identities=13% Similarity=-0.077 Sum_probs=80.4
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|...+......|+++.+...|+++|..+|.++..|...+..+.. .+..+.+...|+
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~ 96 (126)
T 3upv_A 22 NAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHHHHH
Confidence 467789999988875 678899999999999999999999999999999999999999987764 456678999999
Q ss_pred HHHHcC------CCcHHHHHHHHH
Q 013489 83 RATKNC------PWVGELWVRSLL 100 (442)
Q Consensus 83 rAl~~~------p~s~~lW~~y~~ 100 (442)
+++... |....+|.....
T Consensus 97 ~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 97 AARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCcccCCchhHHHHHHHHHH
Confidence 999998 888788777554
No 336
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.97 E-value=0.0014 Score=62.59 Aligned_cols=235 Identities=14% Similarity=-0.028 Sum_probs=132.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC---CC---HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc-------HHHH
Q 013489 29 YLKYEQSSGDPGRVQLLYERAITDFP---VS---SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GELW 95 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~~~p---~~---~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s-------~~lW 95 (442)
...+....|+++.+...|++|+...+ .. ..++...+.... ..++.+.+...|++|+..++.. ...+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34445678999999999999987532 22 233433333333 3456678999999999866432 2234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhh
Q 013489 96 VRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSE 173 (442)
Q Consensus 96 ~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~ 173 (442)
..... +....+..+.+...|++|+..... ........+ ..+..+.... .++......|++|+.+...
T Consensus 186 ~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~lg~~y~~~---------~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 186 FVIAG-NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL-LNIANSYDRS---------GDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHH---------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHC---------CCHHHHHHHHHHHHHHHHh
Confidence 44333 444578899999999999964221 111111111 1111111111 3444455566666665433
Q ss_pred hhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccc---HHHHHHHHHHHHh
Q 013489 174 QMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDH---INEARSIYKRCYS 245 (442)
Q Consensus 174 ~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~-----~~~~~w~~~~~~e~~~g~---~~~ar~i~~ral~ 245 (442)
. ..+.....+...+.+....| +.+.|...+++++...+ ...........+....|+ +..|..++++.-.
T Consensus 255 ~--~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~ 331 (378)
T 3q15_A 255 K--VPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331 (378)
T ss_dssp H--CGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC
T ss_pred h--CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC
Confidence 2 23334667777888888888 99999999999998732 223333333334444566 6666666665211
Q ss_pred cccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhch
Q 013489 246 KRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVTP 282 (442)
Q Consensus 246 ~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~~ 282 (442)
......++.....+-...|+.+.-.....++..
T Consensus 332 ----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 332 ----HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111223444455555566766554444444433
No 337
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=0.00019 Score=56.34 Aligned_cols=102 Identities=12% Similarity=-0.038 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc-------HHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV-------GEL 94 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s-------~~l 94 (442)
....|...+......|+++.+..+|++++...|.+..+|...+..+... ++.+.+...|++++...|.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567888888888899999999999999999999999999998876644 45677999999999987765 677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 95 WVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
|......+. ..++.+.+...|++++...+.
T Consensus 82 ~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 82 YARIGNSYF-KEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHhCCC
Confidence 877776444 468899999999999976543
No 338
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.93 E-value=5.1e-05 Score=59.99 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=69.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|..........|+++.+...|+++|..+|.+...|...+..+... +..+.+...|+
T Consensus 35 ~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-g~~~~A~~~~~ 109 (121)
T 1hxi_A 35 EAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-HNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 467789999998876 7889999999999999999999999999999999999999988876644 45677999999
Q ss_pred HHHHcCCCcH
Q 013489 83 RATKNCPWVG 92 (442)
Q Consensus 83 rAl~~~p~s~ 92 (442)
+++...|...
T Consensus 110 ~al~~~P~~~ 119 (121)
T 1hxi_A 110 AWLLSQPQYE 119 (121)
T ss_dssp HHHC------
T ss_pred HHHHhCcCCC
Confidence 9999888653
No 339
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.93 E-value=0.00013 Score=57.68 Aligned_cols=96 Identities=17% Similarity=-0.017 Sum_probs=81.2
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|..++..+.. .++.+.+...|+
T Consensus 34 ~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 108 (133)
T 2lni_A 34 QAMKHYTEAIKRNPK----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHHHHHHTTCTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 466788888887765 677899999988899999999999999999999999999999887664 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le 103 (442)
+++...|....+|..+...+.
T Consensus 109 ~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 109 KALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHH
Confidence 999999988888887766443
No 340
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.93 E-value=0.0002 Score=56.13 Aligned_cols=96 Identities=15% Similarity=-0.043 Sum_probs=81.3
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.+...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|+
T Consensus 30 ~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 104 (131)
T 2vyi_A 30 AAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYYK 104 (131)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 356678888877765 677899999988899999999999999999999999999999887664 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~le 103 (442)
+++...|.+..+|..+...+.
T Consensus 105 ~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 105 KALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHH
Confidence 999999999888888776444
No 341
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.90 E-value=0.00035 Score=56.87 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=63.6
Q ss_pred hcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ch-hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCC
Q 013489 175 MKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTG 252 (442)
Q Consensus 175 ~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~-~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~ 252 (442)
+.+.+..+++|+.||++ .. + ++.+|.-+... -+ ..+.+|..|+.+....|++..|..||+.++++.. ..
T Consensus 64 YknD~RyLklWl~ya~~---~~-d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A--~P 134 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEY---NS-D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA--EP 134 (152)
T ss_dssp GTTCHHHHHHHHHHHTT---BS-C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BS
T ss_pred ccCCHHHHHHHHHHHHh---cC-C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cc
Confidence 33456677899999855 23 3 78899888877 34 4467999999999999999999999999998632 23
Q ss_pred hHHHHHHHHHHHHH
Q 013489 253 SEDICHAWLRFERE 266 (442)
Q Consensus 253 ~~~i~~~~~~fE~~ 266 (442)
.+.|-.++.+|.+.
T Consensus 135 ~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 135 REFLQQQYRLFQTR 148 (152)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 55677888888765
No 342
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.89 E-value=0.00013 Score=60.75 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=66.4
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
+.|+.++..++...+....+|...+.+....+ +++.|...|++++..+|++..+|..+.......|+++.|...|++++
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444444334556678888898888888 89999999999999999999999999999999999999999999999
Q ss_pred hc
Q 013489 245 SK 246 (442)
Q Consensus 245 ~~ 246 (442)
..
T Consensus 107 ~~ 108 (164)
T 3sz7_A 107 EA 108 (164)
T ss_dssp HH
T ss_pred Hh
Confidence 73
No 343
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.88 E-value=0.0028 Score=60.38 Aligned_cols=223 Identities=9% Similarity=-0.022 Sum_probs=134.0
Q ss_pred hhhHHHHHHhhcCCCC--ChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcch
Q 013489 3 NARAHLEEQISRQDLS--DSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS-------DLWLDYTQYLDKTLKV 73 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~--~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~-------~lW~~Y~~~l~~~~~~ 73 (442)
+|...|+.++...... ++.....+...+......|+++.+...|++|+...+... ..+...+.... ..+.
T Consensus 119 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~ 197 (378)
T 3q15_A 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKH 197 (378)
T ss_dssp HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCC
Confidence 4566778887553211 233455777777777889999999999999998654322 23333333333 3456
Q ss_pred hhHHHHHHHHHHHcCC---Cc---HHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CChhhHHHHHHHHHHHHHHHH
Q 013489 74 GNVVRDVYSRATKNCP---WV---GELWVRSLLSLERSRASEEEISTVFEKSLL-----CAFSTFEEYLDLFLTRIDGLR 142 (442)
Q Consensus 74 ~~~~~~v~erAl~~~p---~s---~~lW~~y~~~le~~~~~~~~~~~i~~~al~-----~~~~~~~~~~~~~~~~~~~l~ 142 (442)
.+.+...|++|+..++ .. ..++..... +....+..+.+...|++++. ..+.....+..+-..+
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~----- 271 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIAN-SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL----- 271 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH-----
Confidence 7889999999998653 22 123433333 44457889999999999997 3332222222111111
Q ss_pred HHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhchhHHHH
Q 013489 143 RRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKD---MVSARGVWERLLKISGAMLEA 219 (442)
Q Consensus 143 rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~---~~~ar~i~~~~l~~~~~~~~~ 219 (442)
.+. .++......+++|+......- .+.....+.....+....+ + +..|..++++ ....+....+
T Consensus 272 ~~~---------g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~-~~~~~~~~~~ 338 (378)
T 3q15_A 272 CKA---------GQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQAVYKETV-DERKIHDLLSYFEK-KNLHAYIEAC 338 (378)
T ss_dssp HHT---------TCHHHHHHHHHHHHHHCCTTC--CSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHC---------CCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh-CCChhHHHHH
Confidence 011 344455566666666543211 1222223333444444444 5 5556655555 1224555668
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 220 WQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 220 w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+...+.+....|+++.|...|++++.
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999999999986
No 344
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00018 Score=58.05 Aligned_cols=97 Identities=10% Similarity=-0.118 Sum_probs=80.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. ++.....|..++......|+++.+...|++++...|.+..+|..++..+... ++.+.+...|+
T Consensus 46 ~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~ 123 (148)
T 2dba_A 46 GALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL-GRLDQAVLDLQ 123 (148)
T ss_dssp HHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 466788888887764 1112678999999888999999999999999999999999999998876644 45677999999
Q ss_pred HHHHcCCCcHHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~~ 101 (442)
+++...|....+|..+...
T Consensus 124 ~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 124 RCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHCSSCHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHH
Confidence 9999999999999886653
No 345
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.82 E-value=0.0019 Score=55.66 Aligned_cols=147 Identities=7% Similarity=-0.065 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLER 104 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~ 104 (442)
.+...+......|+++.+...|++++ +.++.+|...+..+.. .++.+.+...|++|+...|.....|......+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~- 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY- 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-
Confidence 34445555567899999999999997 3377899888876664 456678999999999999999999988877444
Q ss_pred ccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHH
Q 013489 105 SRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRL 184 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l 184 (442)
..++.+.+...|++++...+.... .. +........+....+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~--------------------------~~-------------~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQL--------------------------ID-------------YKILGLQFKLFACEV 123 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSE--------------------------EE-------------CGGGTBCCEEEHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccH--------------------------HH-------------HHHhccccCccchHH
Confidence 478889999999998875443100 00 000000112233456
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH
Q 013489 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAM 216 (442)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~ 216 (442)
|...+.+....| +++.|...|++++...|+.
T Consensus 124 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 124 LYNIAFMYAKKE-EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHcCccc
Confidence 777777778888 8999999999999988764
No 346
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.82 E-value=0.0044 Score=57.26 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=106.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHccCCH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV------GELWVRSLLSLERSRASE 109 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s------~~lW~~y~~~le~~~~~~ 109 (442)
.++++.+..+|+++.. +....+..+.+...|.+|+...+.. ...|..... +....++.
T Consensus 29 ~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAV---------------AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM-MLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCG
T ss_pred CCCHHHHHHHHHHHHH---------------HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCCH
Confidence 3567777777777632 1112344556777777777654321 224444333 33345677
Q ss_pred HHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHH
Q 013489 110 EEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAY 187 (442)
Q Consensus 110 ~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~ 187 (442)
+++...|++|+..... ........+... ..+. .. .++......|++|+.+.... ........++..
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l-g~~~---------~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~ 160 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRA-GKLM---------EP-LDLSKAVHLYQQAAAVFENE-ERLRQAAELIGK 160 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHH---------TT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHH---------Hc-CCHHHHHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 7788888888753211 111111111110 0000 01 24445556667776655331 111123467778
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013489 188 WAHLEQSMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCY 244 (442)
Q Consensus 188 ~a~~e~~~~~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~g~~~~ar~i~~ral 244 (442)
.+.+....| +++.|...|++++...+.. ...|+..+.+....|+++.|...|++++
T Consensus 161 lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQ-KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888988999 9999999999999985432 2367777777777899999999999998
No 347
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.81 E-value=0.0004 Score=53.73 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=78.9
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
++...|+.++...|. +...|..++......|+++.+..+|++++...|.+..+|...+..+.. .++.+.+...|+
T Consensus 27 ~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (125)
T 1na0_A 27 EAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 466788888887765 667898999888899999999999999999999999999998887664 456678999999
Q ss_pred HHHHcCCCcHHHHHHHHH
Q 013489 83 RATKNCPWVGELWVRSLL 100 (442)
Q Consensus 83 rAl~~~p~s~~lW~~y~~ 100 (442)
+++...|....++.....
T Consensus 102 ~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 102 KALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHH
Confidence 999999998888777654
No 348
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=0.00011 Score=60.55 Aligned_cols=89 Identities=9% Similarity=-0.080 Sum_probs=65.7
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--
Q 013489 38 DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK---------VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSR-- 106 (442)
Q Consensus 38 ~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~---------~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~-- 106 (442)
.++.++..|++++..+|.+.+.|..+...+..... ..+.+...|++|+...|.....|......+....
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 45678888889998889999888888876654321 1356888899999988888888877665444321
Q ss_pred --------CCHHHHHHHHHHHHhCChhh
Q 013489 107 --------ASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 107 --------~~~~~~~~i~~~al~~~~~~ 126 (442)
++++++...|++|+...|..
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 46788888899998877663
No 349
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.81 E-value=0.015 Score=54.83 Aligned_cols=235 Identities=12% Similarity=0.070 Sum_probs=135.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCHHH-H----HHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHH----HHH-H
Q 013489 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDL-W----LDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGEL----WVR-S 98 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~~~p~~~~l-W----~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~l----W~~-y 98 (442)
........|+++.+..++++++...|..... | ......+. ..++.+.+...|++|+...|..+.. |.. .
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3334456899999999999999988765432 2 12222222 3356677999999999876543322 211 1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHh
Q 013489 99 LLSLERSRASEEEISTVFEKSLLCAFS------TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLS 172 (442)
Q Consensus 99 ~~~le~~~~~~~~~~~i~~~al~~~~~------~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~ 172 (442)
+..+....++.+.+...|++++..... .........+.. +... ..++......+.+++....
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~---~~~~---------~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ---LLWA---------WARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH---HHHH---------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH---HHHH---------hcCHHHHHHHHHHHHHHhh
Confidence 223444578899999999998853211 001111111111 1001 1345555566666666543
Q ss_pred hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh--HHHHHHH-----HHHHHHhcccHHHHHHHHHHHHh
Q 013489 173 EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQS-----YISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 173 ~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~--~~~~w~~-----~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..- .+.....+...+.+....| +++.|...+++++...+. ....|.. .+.+....|+++.|+..+.+++.
T Consensus 167 ~~~--~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 167 SYQ--PQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp TSC--GGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ccC--cHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 211 1123456777888888899 999999999999976321 1123332 23345578999999999999986
Q ss_pred cccCCC-C-hHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 246 KRFTGT-G-SEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 246 ~~~~~~-~-~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
.. +.+ . ....+..........|+.+.-...+.++
T Consensus 244 ~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 244 PE-FANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CC-CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 111 1 1223344445555667766554444443
No 350
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.80 E-value=8.5e-05 Score=67.74 Aligned_cols=197 Identities=8% Similarity=-0.053 Sum_probs=130.8
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHH-------HHHHhcCChhhHHHHHHHHHhcCCCC-------------------
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYL-------KYEQSSGDPGRVQLLYERAITDFPVS------------------- 56 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~-------~~e~~~g~~~~~~~lyERal~~~p~~------------------- 56 (442)
.++..|..++..+|. ..+.|...+ ......+....+...+.|++...|..
T Consensus 24 ~A~~~F~~a~~~dP~----~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 24 RSLDLFTEITNYDES----ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHhChh----hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 578899999999886 788999994 43333334455666788888754421
Q ss_pred --HHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHHHHHHH
Q 013489 57 --SDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEEYLDLF 134 (442)
Q Consensus 57 --~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~ 134 (442)
.++++.|+..+... +..+.+..+|+..+...|.....|.. .. +....+..+.+...|+.++..+.+....-..++
T Consensus 100 ~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~p~~~~~~~~-a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQ-GNYADAMEALEAAPVAGSEHLVAWMK-AV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp SHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTTCHHHHHHHH-HH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCchHHHHHH-HH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 47888899887754 45677999999888777754423332 22 333468889999999988766533211111222
Q ss_pred HHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcC-c-hh-hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013489 135 LTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKN-T-DG-LLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (442)
Q Consensus 135 ~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~-~-~~-~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~ 211 (442)
+.. +. .-...|++|+.++.+.... . +. ..+.+...+.....+| +.+.|+.+|++++.
T Consensus 177 LG~---al----------------~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG-r~deA~~~l~~a~a 236 (282)
T 4f3v_A 177 HGV---AA----------------ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG-NESAAVALLEWLQT 236 (282)
T ss_dssp HHH---HH----------------HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHH---HH----------------HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 111 10 1113456666666655432 2 33 4568888888889999 99999999999999
Q ss_pred hchhHHHHHHHHHHHH
Q 013489 212 ISGAMLEAWQSYISME 227 (442)
Q Consensus 212 ~~~~~~~~w~~~~~~e 227 (442)
.+|+ ..+|....+..
T Consensus 237 ~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 237 THPE-PKVAAALKDPS 251 (282)
T ss_dssp HSCC-HHHHHHHHCTT
T ss_pred cCCc-HHHHHHHhCCC
Confidence 9999 87777665543
No 351
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.80 E-value=0.00039 Score=60.14 Aligned_cols=102 Identities=4% Similarity=-0.127 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH---------
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG--------- 92 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~--------- 92 (442)
+...|...+......|+++.+...|++++..+|.+...|...+..+.. .+..+.+...|++++...|...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 456898899888899999999999999999999999999999987764 4566789999999999888755
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 93 -------ELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 93 -------~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
.+|......+. ..++.+.+...|++++...+.
T Consensus 115 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp CCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCS
T ss_pred ccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCcc
Confidence 78887776444 478899999999999987664
No 352
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=9.3e-05 Score=57.82 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=46.6
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
|...|+.+|...+ .+|.+...|...+......|+++.+...|+++|..+|.++.+|..++..+... +..+.+...|++
T Consensus 9 A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 86 (117)
T 3k9i_A 9 AVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRYEQGVELLLK 86 (117)
T ss_dssp CHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 4445555554421 12334555555555555555666666666666666666655555555544432 333445555666
Q ss_pred HHHcCCCcHHH
Q 013489 84 ATKNCPWVGEL 94 (442)
Q Consensus 84 Al~~~p~s~~l 94 (442)
++...|.+..+
T Consensus 87 al~~~p~~~~~ 97 (117)
T 3k9i_A 87 IIAETSDDETI 97 (117)
T ss_dssp HHHHHCCCHHH
T ss_pred HHHhCCCcHHH
Confidence 65555555443
No 353
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.77 E-value=0.00031 Score=55.88 Aligned_cols=101 Identities=11% Similarity=-0.079 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcH-------HH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVG-------EL 94 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~-------~l 94 (442)
....|.+........|+++.++..|++||..+|.+..+|...+..+.. .+..+.+...|++|+...|... .+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345688888888889999999999999999999999999988876664 4566789999999999766432 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 95 WVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
|..... .....+..+.+...|++++...+
T Consensus 86 ~~~lg~-~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 86 MSRAGN-AFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHH-HHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhhCc
Confidence 433333 33446888999999999997544
No 354
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00036 Score=54.04 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=38.6
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
+...|+.+|...|. +...|..++......|+++.+...|++++..+|.+...|..++..+... ++.+.+...|++
T Consensus 4 a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 34445555544443 3444555554444555555555555555555555555555444433322 233444555555
Q ss_pred HHHcCC
Q 013489 84 ATKNCP 89 (442)
Q Consensus 84 Al~~~p 89 (442)
++...|
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 554433
No 355
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.74 E-value=0.00014 Score=56.80 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhhcC---chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHH
Q 013489 164 FQRASDYLSEQMKN---TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIY 240 (442)
Q Consensus 164 ~~~a~~~l~~~~~~---~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~ 240 (442)
+++|+.++..++.. .+....+|...+.+....| +++.|...|++++..+|++..+|..++......|+++.|...|
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444555555544 3556788999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 013489 241 KRCYSK 246 (442)
Q Consensus 241 ~ral~~ 246 (442)
++++..
T Consensus 85 ~~al~~ 90 (117)
T 3k9i_A 85 LKIIAE 90 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999974
No 356
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.74 E-value=5.8e-05 Score=74.58 Aligned_cols=83 Identities=6% Similarity=0.026 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF 263 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~f 263 (442)
+|...+.....++ +++.|...|++++..+|++...|...+......|+++.|+..|++|+.. .++.+ .++......
T Consensus 319 ~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~-~a~~~l~~~ 394 (457)
T 1kt0_A 319 AFLNLAMCYLKLR-EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNK-AARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C-----CHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH-HHHHHHHHH
Confidence 4444555556666 7777777788877777777777777777777777777788778777752 22322 234344444
Q ss_pred HHHhCCH
Q 013489 264 EREYGTL 270 (442)
Q Consensus 264 E~~~G~~ 270 (442)
....|..
T Consensus 395 ~~~~~~~ 401 (457)
T 1kt0_A 395 QKKAKEH 401 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 357
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.73 E-value=0.0011 Score=56.89 Aligned_cols=103 Identities=12% Similarity=-0.130 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSS----------------DLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~----------------~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
....|...+......|+++.+..+|++++...|.++ .+|...+..+.. .+..+.+...|++|+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 455788888888889999999999999999998887 788888776654 456678999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
...|.....|......+. ..++.+.+...|++++...+..
T Consensus 116 ~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCc
Confidence 999999999988877554 4788999999999999876654
No 358
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.72 E-value=0.00025 Score=56.51 Aligned_cols=93 Identities=14% Similarity=-0.068 Sum_probs=78.3
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
.+...|+.+|...|. +...|..++......|+++.+...|++++..+|.++..|...+..+... ++.+.+...|.
T Consensus 27 ~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 101 (137)
T 3q49_B 27 EAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM-ESYDEAIANLQ 101 (137)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 456788888888775 6789999999999999999999999999999999999999999877644 56678999999
Q ss_pred HHHHcCCC-----cHHHHHHHHH
Q 013489 83 RATKNCPW-----VGELWVRSLL 100 (442)
Q Consensus 83 rAl~~~p~-----s~~lW~~y~~ 100 (442)
+++...|. ...+|.....
T Consensus 102 ~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 102 RAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHHHChhHHHHHHHHHHHHHHH
Confidence 99998776 5667666544
No 359
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.72 E-value=0.0008 Score=61.61 Aligned_cols=171 Identities=13% Similarity=0.019 Sum_probs=113.7
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
+|...|+.+|...|. +...|..++......|+++.+...|++++..+|.+...|...+..+.. .+..+.+...|+
T Consensus 22 ~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~ 96 (281)
T 2c2l_A 22 EAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ 96 (281)
T ss_dssp HHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 467789999988876 778899999998999999999999999999999999999999887664 456678999999
Q ss_pred HHHHcCCCc-----HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhh
Q 013489 83 RATKNCPWV-----GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (442)
Q Consensus 83 rAl~~~p~s-----~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (442)
+|+...|.. ..+|..... ... ..... ......+. .+..++..
T Consensus 97 ~al~l~p~~~~~~~~~~~~~~~~-~~~-----~~~~~---~~~~~~~~~~~i~~~l~~---------------------- 145 (281)
T 2c2l_A 97 RAYSLAKEQRLNFGDDIPSALRI-AKK-----KRWNS---IEERRIHQESELHSYLTR---------------------- 145 (281)
T ss_dssp HHHHHHHHTTCCCCSHHHHHHHH-HHH-----HHHHH---HHHTCCCCCCHHHHHHHH----------------------
T ss_pred HHHHhCccchhhHHHHHHHHHHH-HHH-----HHHHH---HHHHHHhhhHHHHHHHHH----------------------
Confidence 999977743 356655422 111 01111 11111111 11111111
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
.+...+++|+..+..++...+....+......+.....+.++.+..+|.++...
T Consensus 146 ---l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 ---LIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ---HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ---HHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 112455667777766665444444455555556655543678899999988764
No 360
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.72 E-value=0.0018 Score=59.93 Aligned_cols=207 Identities=9% Similarity=0.004 Sum_probs=122.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i 115 (442)
.|+++.+..+++++....+.+ ++ ...++.+.+...|.++.. +....+..+.+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~-~~~~~~~~A~~~~~~a~~---------------~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FM-KWKPDYDSAASEYAKAAV---------------AFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SS-SCSCCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------cc-CCCCCHHHHHHHHHHHHH---------------HHHHcCCHHHHHHH
Confidence 455677888888888766542 11 112345667778887732 22235778888888
Q ss_pred HHHHHhCChh--hHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHH
Q 013489 116 FEKSLLCAFS--TFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQ 193 (442)
Q Consensus 116 ~~~al~~~~~--~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~ 193 (442)
|.+++..... ........+.... .+.... .++......|++|+.+.... .+.......+...+.++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg-~~~~~~---------g~~~~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAG-MMLKDL---------QRMPEAVQYIEKASVMYVEN-GTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHT---------TCGGGGHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhC---------CCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 9888864321 1111111111111 111111 22333446677777664321 112223467777788777
Q ss_pred HcCCCHHHHHHHHHHHHHhchhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHH---H
Q 013489 194 SMGKDMVSARGVWERLLKISGAM------LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRF---E 264 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~~~~~------~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~f---E 264 (442)
. | +++.|...|++++..++.. ..++.....+....|+++.|..+|++++...........+...|+.. -
T Consensus 128 ~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 128 P-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp T-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 6 6 9999999999999986532 46888999999999999999999999997421111222222333333 3
Q ss_pred HHhCCHhhHHHHHHhh
Q 013489 265 REYGTLEDFDHSVQKV 280 (442)
Q Consensus 265 ~~~G~~~~~~~~~~~~ 280 (442)
...|+.+.-..+++++
T Consensus 206 ~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 206 LHRADYVAAQKCVRES 221 (307)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3347766655555554
No 361
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.71 E-value=0.00033 Score=60.61 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHh--hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ch-hHHHHHHHHHHHHHhcccHHHHH
Q 013489 162 ETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 162 ~~~~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~-~~~~~w~~~~~~e~~~g~~~~ar 237 (442)
.++++|+..+. ..+.+.+..+++|+.|+++ . +.++.+|.-+... -+ ..+.+|..|+.+....|++..|.
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~----~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNY----I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT----C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHc----c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 55667766653 2344566678999999864 2 2567899888877 44 44679999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHH
Q 013489 238 SIYKRCYSKRFTGTGSEDICHAWLRFER 265 (442)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE~ 265 (442)
.||+.++.+... ..+.|-.++.+|++
T Consensus 171 ~Vy~~Gi~~~A~--P~~rL~~~~~~F~~ 196 (223)
T 4aez_C 171 EVYQKGKRMKAK--PFLRFQQKYQQFTH 196 (223)
T ss_dssp HHHHHHHHHTCB--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc--cHHHHHHHHHHHHH
Confidence 999999986422 24566677777764
No 362
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.70 E-value=0.0012 Score=54.54 Aligned_cols=104 Identities=11% Similarity=-0.100 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITD------------------FPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~------------------~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
....|..-.......|+++.+...|+++|.. .|.+..+|...+..+.. .+..+.+...|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 4567888888888899999999999999998 66677888888776654 3566789999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH
Q 013489 84 ATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~ 127 (442)
|+...|.....|......+.. .+..+.+...|++++...|...
T Consensus 89 al~~~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCCcchHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999988775554 7889999999999998877644
No 363
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.0003 Score=54.51 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=64.5
Q ss_pred HHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+...+...+....+|..++.+....| +++.|...|++++..+|+....|..++.+....|+++.|+..|++++.
T Consensus 7 ~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 7 RLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333334555678888999988889 999999999999999999999999999999999999999999999986
No 364
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00032 Score=69.18 Aligned_cols=105 Identities=12% Similarity=-0.063 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 013489 21 EKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVS---------------SDLWLDYTQYLDKTLKVGNVVRDVYSRAT 85 (442)
Q Consensus 21 ~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~---------------~~lW~~Y~~~l~~~~~~~~~~~~v~erAl 85 (442)
.....|..........|+++.|...|++||..+|.+ ..+|..++..+.. .+..+.+...|++|+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 356688889998889999999999999999999988 6888888876664 456688999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH
Q 013489 86 KNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF 127 (442)
Q Consensus 86 ~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~ 127 (442)
...|.....|......+.. .++.+.+...|++|+...+...
T Consensus 345 ~~~p~~~~a~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC----
T ss_pred hcCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999888775554 6889999999999998877643
No 365
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.65 E-value=0.00046 Score=57.11 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcC-----------chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKN-----------TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYI 224 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~-----------~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~ 224 (442)
++......|.+|+.++...... .+....+|...+......| +++.|...+++++..+|++...|...+
T Consensus 26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSEVLKREETNEKALFRRA 104 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 4455556667776664332210 2334568888899989999 999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHh
Q 013489 225 SMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 225 ~~e~~~g~~~~ar~i~~ral~ 245 (442)
......|+++.|...|++++.
T Consensus 105 ~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 105 KARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHh
Confidence 999999999999999999997
No 366
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00019 Score=67.79 Aligned_cols=149 Identities=11% Similarity=-0.030 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
....|..........|+++.|...|+++|..+|.+.. +. ..+....+.. ++. ..+|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~--------~~~~~~~~~~----~l~-----~~~~~nla~- 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-FQ--------LYGKYQDMAL----AVK-----NPCHLNIAA- 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-HT--------CCHHHHHHHH----HHH-----THHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-hh--------hcccHHHHHH----HHH-----HHHHHHHHH-
Confidence 3456777777677789999999999999998886541 00 0011111111 111 135555554
Q ss_pred HHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhh
Q 013489 102 LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGL 181 (442)
Q Consensus 102 le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~ 181 (442)
+....+..+.+...|++++...+...
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~------------------------------------------------------ 264 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNP------------------------------------------------------ 264 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCH------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------------------------------------------------------
Confidence 33345667777777777775433211
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHh
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEI-ELDHINEARSIYKRCYS 245 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~-~~g~~~~ar~i~~ral~ 245 (442)
..|...+..+...+ +++.|+..|++++...|++..+|..+..+.. ..+..+.++.+|.+++.
T Consensus 265 -~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 265 -KALFRRGKAKAELG-QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -HHHHHHHHHHHTTT-CHHHHHHHHHHTTC-----------------------------------
T ss_pred -HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 12333344444555 6777777777777666666666666665533 33456666667776665
No 367
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.64 E-value=0.00026 Score=53.76 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHh
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA--MLEAWQSYISMEIEL-DHINEARSIYKRCYS 245 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~--~~~~w~~~~~~e~~~-g~~~~ar~i~~ral~ 245 (442)
+....+|..++.+....+ +++.|...|++++...|+ ...+|...+.+.... |+++.|...|.+++.
T Consensus 37 ~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 37 PEESKYWLMKGKALYNLE-RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 344557777787777777 888888888888888888 788888888888888 888888888888886
No 368
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=0.00012 Score=69.11 Aligned_cols=117 Identities=11% Similarity=-0.020 Sum_probs=66.7
Q ss_pred hhhHHHHHHhhcCCCCChHhH-----------------HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKF-----------------QQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQ 65 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~-----------------~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~ 65 (442)
+|...|+.+|...|. +. ..|.+++......|+++.+...|+++|..+|.+...|...+.
T Consensus 197 ~A~~~y~~Al~~~p~----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (338)
T 2if4_A 197 EAMQQYEMAIAYMGD----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272 (338)
T ss_dssp HHHHHHHHHHHHSCH----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 466788888877663 32 378888888889999999999999999999999999999988
Q ss_pred HHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 66 YLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 66 ~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
.+.. .+..+.+...|++|+...|....+|..+........+..+..+.+|.+++...+
T Consensus 273 a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 273 AKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHT-TTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 7664 456688999999999999998888887665434444556677888888886544
No 369
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.63 E-value=0.014 Score=50.54 Aligned_cols=61 Identities=11% Similarity=-0.153 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh-cc-----cHHHHHHHHHHHHh
Q 013489 183 RLYAYWAHLEQS----MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE-LD-----HINEARSIYKRCYS 245 (442)
Q Consensus 183 ~l~~~~a~~e~~----~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~-~g-----~~~~ar~i~~ral~ 245 (442)
..+..++.+... .. +++.|...|++++.. +.+...+.....+... .| +++.|...|++|+.
T Consensus 126 ~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 344445555544 34 889999999999987 3333344445554432 23 89999999999986
No 370
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.62 E-value=0.0012 Score=51.79 Aligned_cols=97 Identities=7% Similarity=-0.040 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc---HHHHHHHHH
Q 013489 27 MIYLKYEQSSGDPGRVQLLYERAITDFPVSS---DLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV---GELWVRSLL 100 (442)
Q Consensus 27 ~~y~~~e~~~g~~~~~~~lyERal~~~p~~~---~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s---~~lW~~y~~ 100 (442)
...+......|+++.+...|++++..+|.++ ..|...+..... .++.+.+...|++++...|.+ ...|.....
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3344445678999999999999999999888 788877766554 456678999999999999988 677777666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCChh
Q 013489 101 SLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
.+. ..++.+.+...|++++...+.
T Consensus 85 ~~~-~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 85 SQY-GEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTT
T ss_pred HHH-HcCCHHHHHHHHHHHHHHCCC
Confidence 444 478899999999999976554
No 371
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.61 E-value=0.021 Score=52.65 Aligned_cols=201 Identities=13% Similarity=0.027 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC--CcHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP--WVGELWVRSLL 100 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p--~s~~lW~~y~~ 100 (442)
......|+.|.. ++ +...|++.+...+.+.....-.+. +....++.+.+..++.+++..-| .+.++....+.
T Consensus 71 ~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~-i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 71 GKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLAT-AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp HHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 345556666553 21 667788888765555555553333 33345677889999999988776 67778877777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCChhhH----HHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhc
Q 013489 101 SLERSRASEEEISTVFEKSLLCAFSTF----EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (442)
Q Consensus 101 ~le~~~~~~~~~~~i~~~al~~~~~~~----~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~ 176 (442)
.+.. .++.+.++.+++++....++.. ...+.+...|+....- . +.++.|..++.....
T Consensus 145 i~L~-~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g----~-------------~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 145 VALL-NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN----K-------------ETATSNFYYYEELSQ 206 (310)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT----C-------------STTTHHHHHHHHHHT
T ss_pred HHHH-CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhC----C-------------ccHHHHHHHHHHHHH
Confidence 4444 6888999999999877665211 1122233333322210 0 012333333333332
Q ss_pred CchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 177 NTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKIS----------GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 177 ~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~----------~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..+........|. ....+| +++.|.++++.+++.+ |+++.+....|.+....|+ .|..++.++..
T Consensus 207 ~~p~~~~~~lLln-~~~~~g-~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~- 281 (310)
T 3mv2_B 207 TFPTWKTQLGLLN-LHLQQR-NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK- 281 (310)
T ss_dssp TSCSHHHHHHHHH-HHHHHT-CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-
T ss_pred hCCCcccHHHHHH-HHHHcC-CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-
Confidence 3332111111222 567778 9999999999887764 6788888899888888887 78889999886
Q ss_pred ccCCCCh
Q 013489 247 RFTGTGS 253 (442)
Q Consensus 247 ~~~~~~~ 253 (442)
+.++.|
T Consensus 282 -~~P~hp 287 (310)
T 3mv2_B 282 -LDHEHA 287 (310)
T ss_dssp -TTCCCH
T ss_pred -hCCCCh
Confidence 344444
No 372
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.60 E-value=0.00041 Score=59.64 Aligned_cols=99 Identities=7% Similarity=-0.095 Sum_probs=79.7
Q ss_pred hhhHHHHHHhhcCCCCChH-------------hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013489 3 NARAHLEEQISRQDLSDSE-------------KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDK 69 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~-------------~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~ 69 (442)
+|...|+.+|...|.. ++ ....|..++......|+++.+...|+++|...|.+...|...+..+..
T Consensus 56 ~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 56 EAIVKYKEALDFFIHT-EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY 134 (198)
T ss_dssp HHHHHHHHHHHTTTTC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4566788888766531 10 026788888888889999999999999999999999999999887764
Q ss_pred hcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 70 TLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 70 ~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
.++.+.+...|++|+...|....+|......+.
T Consensus 135 -~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 135 -FGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp -HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 456678999999999999999988888766443
No 373
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.59 E-value=0.036 Score=54.27 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhHHHHHHHHHHHcCCCcHHHHHHH
Q 013489 25 QYMIYLKYEQSSG---DPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRDVYSRATKNCPWVGELWVRS 98 (442)
Q Consensus 25 ~w~~y~~~e~~~g---~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~v~erAl~~~p~s~~lW~~y 98 (442)
.+..+.......| +.+.+...|++++...|.....|.....++... .++.+.+...|++|. |.....+...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 3334444334455 566666667777766666666555544444321 134455666676666 5555555554
Q ss_pred HHHHH--HccCCHHHHHHHHHHHHhCC
Q 013489 99 LLSLE--RSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 99 ~~~le--~~~~~~~~~~~i~~~al~~~ 123 (442)
...+. ...++.+++...|+++...+
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 44322 23455666666666666554
No 374
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00053 Score=56.54 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=70.7
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL- 71 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~----------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~- 71 (442)
+++..|+.++..+|. +.+.|.++.......+. ++.++..|++||..+|.+.+.|......+...+
T Consensus 20 eA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 20 QIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 467788888888876 77888888887666654 459999999999999999999999988776543
Q ss_pred ---------chhhHHHHHHHHHHHcCCCcH
Q 013489 72 ---------KVGNVVRDVYSRATKNCPWVG 92 (442)
Q Consensus 72 ---------~~~~~~~~v~erAl~~~p~s~ 92 (442)
++.+.+...|++|+...|...
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 356789999999999999763
No 375
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.56 E-value=0.00095 Score=52.40 Aligned_cols=63 Identities=6% Similarity=-0.028 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM---LEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~---~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..+...+.+....| +++.|...|++++..+|++ ...|...+......|+++.|...|++++..
T Consensus 40 ~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57777888888888 9999999999999999888 778888899888999999999999999973
No 376
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.0014 Score=47.83 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLS 101 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~ 101 (442)
....|..........|+++.+...|++++...|.+..+|..+...+.. .++.+.+...|++++...|.....|..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 566788888888889999999999999999999999999998887664 4566789999999999999988888776654
Q ss_pred H
Q 013489 102 L 102 (442)
Q Consensus 102 l 102 (442)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 377
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.54 E-value=0.00091 Score=55.23 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcchhhHHHHHHHHHHHc--
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPV-------SSD-----LWLDYTQYLDKTLKVGNVVRDVYSRATKN-- 87 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~-------~~~-----lW~~Y~~~l~~~~~~~~~~~~v~erAl~~-- 87 (442)
....|.....-....|+++.+...|++||..+|. +.. +|.+-...+.. .+..+.+...|++||..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence 3456778888778899999999999999999998 444 88888876664 45667788999999998
Q ss_pred -----CCCcHHHH----HHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 88 -----CPWVGELW----VRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 88 -----~p~s~~lW----~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
.|.....| ......+.. .+..+++...|++++...+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCC
Confidence 99999999 776665554 78899999999999976543
No 378
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.54 E-value=0.0019 Score=63.55 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhHHHHHHHHHHH-H--HhcccHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSM---GKDMVSARGVWERLLKISGAMLEAWQSYISM-E--IELDHINEA 236 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~---~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~-e--~~~g~~~~a 236 (442)
.+.+|+.++..+....+.....+...+.++..- .++++.|...|++++ |.++..+..+..+ . ...++++.|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 445566666555544444444444444444322 137788888888877 5556666666665 3 345678888
Q ss_pred HHHHHHHHh
Q 013489 237 RSIYKRCYS 245 (442)
Q Consensus 237 r~i~~ral~ 245 (442)
...|++|+.
T Consensus 271 ~~~~~~Aa~ 279 (452)
T 3e4b_A 271 MKYLDNGRA 279 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888775
No 379
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.53 E-value=0.00091 Score=53.06 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHH-------HHHHHHHHHHHhcccHHHH
Q 013489 164 FQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAML-------EAWQSYISMEIELDHINEA 236 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~-------~~w~~~~~~e~~~g~~~~a 236 (442)
|++|+.++.+++...|....+|...+.+....| +++.|...|++++...|+.. .+|.....+....|+++.|
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A 102 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLA 102 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344444444444435556678888888888888 89999999999998866542 3566666777778899999
Q ss_pred HHHHHHHHh
Q 013489 237 RSIYKRCYS 245 (442)
Q Consensus 237 r~i~~ral~ 245 (442)
...|++++.
T Consensus 103 ~~~~~kal~ 111 (127)
T 4gcn_A 103 VQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
No 380
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=0.0036 Score=63.41 Aligned_cols=177 Identities=10% Similarity=0.024 Sum_probs=119.0
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGD----------PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLK- 72 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~----------~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~- 72 (442)
|-..|+.+|..+|. ++.+|..=.......|. ++.+...|+++|..+|.+..+|..-.-.+.. .+
T Consensus 48 al~~~~~~l~~nP~----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~ 122 (567)
T 1dce_A 48 VLELTSQILGANPD----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE 122 (567)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSS
T ss_pred HHHHHHHHHHHCch----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccc
Confidence 34678888888876 88888765555555555 7889999999999999999999988766654 44
Q ss_pred -hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHHHHHHhhcc-
Q 013489 73 -VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFS- 148 (442)
Q Consensus 73 -~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~--~~~~~~~~~~~~~l~rr~~~~- 148 (442)
..+.+...+++++...|.....|......+.......++....+.+++...+.+. |.+....+. ++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~-------~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-------QLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH-------HHSCCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH-------hhcccc
Confidence 3367889999999999999999998776666544367778888888888777643 333322211 11100
Q ss_pred Cccc-hhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC
Q 013489 149 GEVE-GVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG 196 (442)
Q Consensus 149 ~~~~-~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~ 196 (442)
.... .... ...++++++++..++...|.....|.+..-+....+
T Consensus 196 ~~~~~~~~~----~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRLP----ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSSC----HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccccccc----HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 0000 0000 134566666666666545555668887766655444
No 381
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.41 E-value=0.00044 Score=66.15 Aligned_cols=100 Identities=10% Similarity=-0.095 Sum_probs=78.5
Q ss_pred hhhHHHHHHhhcCCC------------CChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 013489 3 NARAHLEEQISRQDL------------SDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT 70 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~------------~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~ 70 (442)
+|...|+.+|...+. .++.+...|.+++......|+++.|...|+++|..+|.+...|..++..+..
T Consensus 241 ~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 319 (370)
T 1ihg_A 241 MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG- 319 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-
Confidence 356677777762110 1234677899999988899999999999999999999999999998877664
Q ss_pred cchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 013489 71 LKVGNVVRDVYSRATKNCPWVGELWVRSLLSLE 103 (442)
Q Consensus 71 ~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le 103 (442)
.++.+.+...|++|+...|....+|..+...+.
T Consensus 320 ~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 320 LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456678999999999999998888887665443
No 382
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.40 E-value=0.00099 Score=52.00 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHhcccHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAM-------LEAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~-------~~~w~~~~~~e~~~g~~~~ar 237 (442)
+.|+.++...+...+....++...+.+....+ +++.|..+|++++...|+. ..+|...+......|+++.|.
T Consensus 21 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 99 (131)
T 1elr_A 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33334433333323445567888888888888 8999999999999997766 778888999888899999999
Q ss_pred HHHHHHHh
Q 013489 238 SIYKRCYS 245 (442)
Q Consensus 238 ~i~~ral~ 245 (442)
..|++++.
T Consensus 100 ~~~~~~~~ 107 (131)
T 1elr_A 100 HFYNKSLA 107 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999997
No 383
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.37 E-value=0.00071 Score=51.11 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+....+|...+.+....| +++.|...|++++..+|+...+|..........|+++.|...|++++.
T Consensus 4 p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344567888888888888 999999999999999999999999999999999999999999999996
No 384
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0025 Score=48.35 Aligned_cols=69 Identities=13% Similarity=0.000 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCc
Q 013489 22 KFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWV 91 (442)
Q Consensus 22 ~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s 91 (442)
+...|...+......|+++.+...|+++|...|.++.+|...+..+.. .+..+.+...|++|+...|..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence 456788888888889999999999999999999999999999887664 456678999999999999987
No 385
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.32 E-value=0.00034 Score=52.94 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=50.5
Q ss_pred hHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCC
Q 013489 20 SEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCP 89 (442)
Q Consensus 20 ~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p 89 (442)
|++...|..++......|+++.+...|+++|..+|.++..|......+.. .+..+.+...|++|+...|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhh
Confidence 34666777777777778888888888888888888888888877766553 3455667788888877554
No 386
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.28 E-value=0.0005 Score=68.18 Aligned_cols=91 Identities=11% Similarity=-0.173 Sum_probs=54.6
Q ss_pred hhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 013489 4 ARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSR 83 (442)
Q Consensus 4 ~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~er 83 (442)
|...|+.+|...|. +...|..++......|+++.|...|++++..+|.+...|...+..+... +..+.+...|++
T Consensus 25 A~~~~~~Al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~ 99 (477)
T 1wao_1 25 AIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDYET 99 (477)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 45556666655553 4556666666666666666666666666666666666666665544432 344556666666
Q ss_pred HHHcCCCcHHHHHHHH
Q 013489 84 ATKNCPWVGELWVRSL 99 (442)
Q Consensus 84 Al~~~p~s~~lW~~y~ 99 (442)
|+...|.....|..+.
T Consensus 100 al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 100 VVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp HHHHSTTCTTHHHHHH
T ss_pred HHHhCCCCHHHHHHHH
Confidence 6666666555555543
No 387
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.27 E-value=0.0028 Score=52.24 Aligned_cols=97 Identities=13% Similarity=0.216 Sum_probs=72.4
Q ss_pred HHHHHHHHHHh--hhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-ch-hHHHHHHHHHHHHHhcccHHHHH
Q 013489 162 ETFQRASDYLS--EQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SG-AMLEAWQSYISMEIELDHINEAR 237 (442)
Q Consensus 162 ~~~~~a~~~l~--~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~-~~~~~w~~~~~~e~~~g~~~~ar 237 (442)
.++++|+..+. ..+.+.+..+++|+.|+++. + + ++.+|.-+... -+ ..+.+|..|+.+....|++..|.
T Consensus 44 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~-~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 44 TLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N-E---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S-C---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C-C---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 45566666553 33445666789999998762 3 4 67788888877 34 45679999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHh
Q 013489 238 SIYKRCYSKRFTGTGSEDICHAWLRFEREY 267 (442)
Q Consensus 238 ~i~~ral~~~~~~~~~~~i~~~~~~fE~~~ 267 (442)
.||..++.... ...+.|-.++.+|+...
T Consensus 117 ~Iy~~Gi~~~A--~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 117 AIFQEGIQQKA--EPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHTTC--BSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CcHHHHHHHHHHHHHHH
Confidence 99999998642 23567778888887654
No 388
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0087 Score=56.37 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 013489 179 DGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (442)
Q Consensus 179 ~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~ 258 (442)
+....++..++-.....| +++.|...+++++..+|+ ...|..........|+.+.|...|.+|+. +.+..+...|.
T Consensus 274 ~~~a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKG-KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 334456666665555667 999999999999999876 44556666677778999999999999997 44444443443
Q ss_pred HHHHHHHHhCCHhhHHHHHH
Q 013489 259 AWLRFEREYGTLEDFDHSVQ 278 (442)
Q Consensus 259 ~~~~fE~~~G~~~~~~~~~~ 278 (442)
.=+-| |-+++.|.-+..
T Consensus 350 ~~l~F---~sn~~~i~~~~~ 366 (372)
T 3ly7_A 350 ENGIF---QTSVPYVVPYLD 366 (372)
T ss_dssp HHSSS---CCCHHHHCHHHH
T ss_pred hCcee---ecchhhhHHHHH
Confidence 33333 556665554443
No 389
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.22 E-value=0.047 Score=46.03 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch---hH---HHHHHHHHHHHHh
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---AM---LEAWQSYISMEIE 229 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~---~~---~~~w~~~~~~e~~ 229 (442)
++......+.+++...............++...+.+....| +++.|...+++++...+ +. ..++...+.....
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44455566666666554221111133456777788888888 99999999999997632 21 2356777778888
Q ss_pred cccHHHHHHHHHHHHhc
Q 013489 230 LDHINEARSIYKRCYSK 246 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~~ 246 (442)
.|+++.|...|++++..
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 89999999999999863
No 390
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.20 E-value=0.0049 Score=55.82 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=88.4
Q ss_pred HHHHHhhcCCCCChHhHH--HHHHHHHHHH---hcCC------hhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh---
Q 013489 7 HLEEQISRQDLSDSEKFQ--QYMIYLKYEQ---SSGD------PGRVQLLYERAITDFPV--SSDLWLDYTQYLDKT--- 70 (442)
Q Consensus 7 ~yE~~l~~~~~~~~~~~~--~w~~y~~~e~---~~g~------~~~~~~lyERal~~~p~--~~~lW~~Y~~~l~~~--- 70 (442)
.++.+|..... ++.+ +|..-+.... ..|+ ...+...+||+|..+|. +...|..+..+...-
T Consensus 139 ~~~~~l~~~~~---~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~ 215 (301)
T 3u64_A 139 RLHKVLSRCTR---VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPES 215 (301)
T ss_dssp HHHHHHTTCCG---GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHcCc---cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCc
Confidence 45666655533 3333 5665555432 2243 35778899999999999 677999998876642
Q ss_pred -cchhhHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChh
Q 013489 71 -LKVGNVVRDVYSRATKNCPWV-GELWVRSLLSLERSRASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 71 -~~~~~~~~~v~erAl~~~p~s-~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~ 125 (442)
.++.++++..|+||+...|.. ...+..|..++-+..++.+.+...+++++..++.
T Consensus 216 ~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 216 FGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 467889999999999999974 8999999998887668889999999999987765
No 391
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.19 E-value=0.00026 Score=55.18 Aligned_cols=46 Identities=17% Similarity=0.032 Sum_probs=35.0
Q ss_pred ceEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKA----------TYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
+.|.+.|+=..- -+++|+..|++||.|.+|.|+++. ++|||||+|.
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~ 63 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCP 63 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECS
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEEC
Confidence 477788762221 235789999999999999987662 5899999995
No 392
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.15 E-value=0.007 Score=43.81 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 181 LLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 181 ~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
....|...+......+ +++.|...|++++...|+...+|..++.+....|+++.|...|++++..
T Consensus 8 ~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456777788888888 9999999999999999999999999999999999999999999999973
No 393
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.15 E-value=0.11 Score=57.20 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHH
Q 013489 36 SGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTV 115 (442)
Q Consensus 36 ~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i 115 (442)
.++.++|..+++|+ ..+.+|..|+......+ ..+.+...|.+| ....-|..-+..+++ .+..+++-..
T Consensus 1089 i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G-~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC-CHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHH
Confidence 34555555555544 66888888888777544 445677888877 455677776766665 5777888888
Q ss_pred HHHHHhCC
Q 013489 116 FEKSLLCA 123 (442)
Q Consensus 116 ~~~al~~~ 123 (442)
|..|....
T Consensus 1157 L~mArk~~ 1164 (1630)
T 1xi4_A 1157 LQMARKKA 1164 (1630)
T ss_pred HHHHHhhc
Confidence 87777543
No 394
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.15 E-value=0.0044 Score=59.16 Aligned_cols=102 Identities=12% Similarity=-0.088 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 23 FQQYMIYLKYEQSSGDPGRVQLLYERAIT----------------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 23 ~~~w~~y~~~e~~~g~~~~~~~lyERal~----------------~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
...|...+......|+++.|...|++||. ..|.+..+|..++..+.. .+..+.+...|++|+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 34577777777889999999999999998 667778899998877664 4566789999999999
Q ss_pred cCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhCChhh
Q 013489 87 NCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLCAFST 126 (442)
Q Consensus 87 ~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~ 126 (442)
..|.....|..+...+.. .++.+++...|++|+...+..
T Consensus 302 ~~p~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp TCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred hCchhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 999999999988875554 688999999999999876653
No 395
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.06 E-value=0.0042 Score=51.22 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhc----C-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------chhHHHHH--
Q 013489 155 LDYSLIRETFQRASDYLSEQMK----N-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAW-- 220 (442)
Q Consensus 155 ~~~~~~r~~~~~a~~~l~~~~~----~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-------~~~~~~~w-- 220 (442)
.++......|++|+.+...... . .+....+|...+.....+| +++.|...|+++|.. +|++...|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 3444555667777766533110 0 1112348888888888999 999999999999999 99999999
Q ss_pred --HHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 221 --QSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 221 --~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
..-.......|+++.|...|++|+.
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888999999999999999999997
No 396
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.01 E-value=0.046 Score=46.07 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---ch----hHHHHHHHHHHHH
Q 013489 155 LDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI---SG----AMLEAWQSYISME 227 (442)
Q Consensus 155 ~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~---~~----~~~~~w~~~~~~e 227 (442)
.++......|++++...... ...+....++...+.+....| +++.|...+++++.. .+ ....++.......
T Consensus 40 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 40 DRFDEARASFQALQQQAQKS-GDHTAEHRALHQVGMVERMAG-NWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 34555566677777655432 122334567777888888888 999999999999988 33 2244677788888
Q ss_pred HhcccHHHHHHHHHHHHhcccCCCChHHHHH---HHHHHHHHhCCHhhHHHHHHhhc
Q 013489 228 IELDHINEARSIYKRCYSKRFTGTGSEDICH---AWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~---~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
...|+++.|...|++++...-....+..... .........|+.+.-...+.+..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8899999999999999963212223332222 22333444566655444444443
No 397
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.01 E-value=0.085 Score=42.07 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch------hHHHHHHHHHHHHHh
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG------AMLEAWQSYISMEIE 229 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~------~~~~~w~~~~~~e~~ 229 (442)
++......+++++...... .+......++...+.+....| +++.|...+++++...+ ....++...+.+...
T Consensus 64 ~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 3444455566666554332 112223456777888888888 99999999999997732 223467777778888
Q ss_pred cccHHHHHHHHHHHHh
Q 013489 230 LDHINEARSIYKRCYS 245 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~ 245 (442)
.|+++.|...|++++.
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8999999999999986
No 398
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.99 E-value=0.077 Score=52.67 Aligned_cols=98 Identities=9% Similarity=-0.054 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHc-CCCcHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAITD-FPVSSDLWLDYTQYLDKTL--------KVGNVVRDVYSRATKN-CPWVGEL 94 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~~-~p~~~~lW~~Y~~~l~~~~--------~~~~~~~~v~erAl~~-~p~s~~l 94 (442)
.+..-|+..-+.|+++.|..+|+++... ...+...|...|..+.... ...+.+..+|++.... ++-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777889999999999988875 3446666766665443221 1234567777776662 3334566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013489 95 WVRSLLSLERSRASEEEISTVFEKSLLCA 123 (442)
Q Consensus 95 W~~y~~~le~~~~~~~~~~~i~~~al~~~ 123 (442)
|...|..+-+ .+..+.+..+|++....+
T Consensus 108 yn~lI~~~~~-~g~~~~A~~l~~~M~~~g 135 (501)
T 4g26_A 108 FTNGARLAVA-KDDPEMAFDMVKQMKAFG 135 (501)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Confidence 6766664544 577777888887766544
No 399
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.94 E-value=0.0016 Score=64.49 Aligned_cols=91 Identities=12% Similarity=-0.065 Sum_probs=78.5
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHH
Q 013489 33 EQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEI 112 (442)
Q Consensus 33 e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~ 112 (442)
....|+++.|..+|++||..+|.+..+|...+..+... +..+.+...|++|+...|.....|......+. ..+..+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHH
Confidence 34678999999999999999999999999999877644 56678999999999999999999998877544 47889999
Q ss_pred HHHHHHHHhCChh
Q 013489 113 STVFEKSLLCAFS 125 (442)
Q Consensus 113 ~~i~~~al~~~~~ 125 (442)
...|++++...+.
T Consensus 94 ~~~~~~al~~~p~ 106 (477)
T 1wao_1 94 LRDYETVVKVKPH 106 (477)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987665
No 400
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.93 E-value=0.15 Score=56.08 Aligned_cols=106 Identities=11% Similarity=0.134 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccc
Q 013489 159 LIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDH 232 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~-~~~~~ar~i~~~~l~~~~-----~~~~~w~~~~~~e~~~g~ 232 (442)
.-++.|++|+.+++..+...+....+|..++.++.+.. +++..+.++|..-+...+ .+..+|.+++-+....|+
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 34466788888888887766666677766666655542 145566666666666555 678899999999999999
Q ss_pred HHHHHHHH-------------HHHHhcccCCCChHHHHHHHHHHHHHhC
Q 013489 233 INEARSIY-------------KRCYSKRFTGTGSEDICHAWLRFEREYG 268 (442)
Q Consensus 233 ~~~ar~i~-------------~ral~~~~~~~~~~~i~~~~~~fE~~~G 268 (442)
+++|...+ +..+. ....+ .|+-.-++|--.++
T Consensus 1371 ~dnA~~tm~~h~~~a~~~~~Fk~~i~---kv~n~-elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1371 YDNAIITMMNHPTDAWKEGQFKDIIT---KVANV-ELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhccHhhhhhHHHHHHhc---ccccH-HHHHHHHHHHHhhC
Confidence 99888433 33222 22334 45556677766555
No 401
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.014 Score=43.88 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 183 RLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 183 ~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..|...+......| +++.|...|++++...|++..+|...+......|+++.|...|++++..
T Consensus 5 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45666777777888 9999999999999999999999999999999999999999999999973
No 402
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.89 E-value=0.028 Score=45.01 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHh
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGA------MLEAWQSYISMEIE 229 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~------~~~~w~~~~~~e~~ 229 (442)
++......+.+++....... .......++...+.+....| +++.|...|++++...+. ...++...+.+...
T Consensus 24 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 24 NFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 44455566666666554321 11223356777888888888 999999999999987433 24577788888888
Q ss_pred cccHHHHHHHHHHHHhc
Q 013489 230 LDHINEARSIYKRCYSK 246 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~~ 246 (442)
.|+++.|...|++++..
T Consensus 102 ~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999999999999964
No 403
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.87 E-value=0.093 Score=45.22 Aligned_cols=81 Identities=12% Similarity=0.006 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhch--hHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhC--
Q 013489 197 KDMVSARGVWERLLKISG--AMLEAWQSYISMEIE----LDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYG-- 268 (442)
Q Consensus 197 ~~~~~ar~i~~~~l~~~~--~~~~~w~~~~~~e~~----~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G-- 268 (442)
++++.|...|++++...+ +.+..+..+..+... .++++.|...|++|+.. ...+...+..-.-++...|
T Consensus 103 ~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTTHHHHHHHHHHHHCBTTT
T ss_pred cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHcCCCCC
Confidence 389999999999999866 457777777777766 56899999999999972 2334444444344444445
Q ss_pred CHhhHHHHHHhh
Q 013489 269 TLEDFDHSVQKV 280 (442)
Q Consensus 269 ~~~~~~~~~~~~ 280 (442)
...++..++.-.
T Consensus 180 ~~~d~~~A~~~~ 191 (212)
T 3rjv_A 180 IEPNKQKALHWL 191 (212)
T ss_dssp BCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 344455555443
No 404
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.82 E-value=0.1 Score=47.46 Aligned_cols=163 Identities=10% Similarity=-0.009 Sum_probs=91.8
Q ss_pred cCCHHHHHHHHHHHHhCChhhHH--HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHH
Q 013489 106 RASEEEISTVFEKSLLCAFSTFE--EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~~~~--~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~ 183 (442)
.++.+.+...+++++........ ....++. .+..+.... .++......|.+|+...... .+......
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~A~~~~~~al~~~~~~-~~~~~~~~ 156 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY-YVAAYVLKK---------VDYEYCILELKKLLNQQLTG-IDVYQNLY 156 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHHHTS---------SCHHHHHHHHHHHHTTCCCS-SCTTHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHH-HHHHHHhcC---------CCHHHHHHHHHHHHHHHhcC-CchHHHHH
Confidence 57888999999999875443211 1111111 111110000 12323333344444322110 11122355
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---chhH----HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh---
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI---SGAM----LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS--- 253 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~---~~~~----~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~--- 253 (442)
++...+.++...| +++.|..+|++++.. .++. ..++...+......|+++.|...|++|+......+..
T Consensus 157 ~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 7777888888888 999999999999954 4332 2578888888889999999999999999642111111
Q ss_pred HHHHHHHHHHHHHhCCHhhH-HHHHHhh
Q 013489 254 EDICHAWLRFEREYGTLEDF-DHSVQKV 280 (442)
Q Consensus 254 ~~i~~~~~~fE~~~G~~~~~-~~~~~~~ 280 (442)
..++..........|+.+.- ....+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 23333444444555665433 3334443
No 405
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.056 Score=51.90 Aligned_cols=200 Identities=11% Similarity=0.026 Sum_probs=119.5
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHH---
Q 013489 34 QSSGDPGRVQLLYERAITDFPVSSD-----------------LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE--- 93 (442)
Q Consensus 34 ~~~g~~~~~~~lyERal~~~p~~~~-----------------lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~--- 93 (442)
.+.|++..|..+|..++...|...+ .....+..+. ..++.+.+...|.+++...+....
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3478999999999999998776543 2333333333 345667788999999886654322
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 013489 94 --LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTF--EEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASD 169 (442)
Q Consensus 94 --lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~--~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~ 169 (442)
+-...+..+....+..+.+..++++++....... .....++.... .+. ...+++......+.++..
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~---------~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA-TLH---------YQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH-HHH---------HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH-HHH---------HHccChHHHHHHHHHHHH
Confidence 1122233344445667778888888774321100 00001111000 000 011233344444444444
Q ss_pred HHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch---h--H--HHHHHHHHHHHHhcccHHHHHHHHHH
Q 013489 170 YLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISG---A--M--LEAWQSYISMEIELDHINEARSIYKR 242 (442)
Q Consensus 170 ~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~---~--~--~~~w~~~~~~e~~~g~~~~ar~i~~r 242 (442)
.+... .+.+..+.++...++++...+ ++++|+.++++++...+ + . ..++.....+....|++..|...|..
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 164 EFKKL-DDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHTTS-SCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHhc-ccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33221 223445678888899999999 99999999999997632 1 1 34677777777778999999999988
Q ss_pred HHhc
Q 013489 243 CYSK 246 (442)
Q Consensus 243 al~~ 246 (442)
++..
T Consensus 242 a~~~ 245 (434)
T 4b4t_Q 242 SFES 245 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 406
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.15 Score=48.93 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=102.9
Q ss_pred chhhHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhCChhhHHH-HHHH
Q 013489 72 KVGNVVRDVYSRATKNCPWVGE-----------------LWVRSLLSLERSRASEEEISTVFEKSLLCAFSTFEE-YLDL 133 (442)
Q Consensus 72 ~~~~~~~~v~erAl~~~p~s~~-----------------lW~~y~~~le~~~~~~~~~~~i~~~al~~~~~~~~~-~~~~ 133 (442)
++.+.+...|..++...|.... ....... +....++.+++...+.+++......... ....
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~-~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQ-LYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4556788999999987765321 1222222 3445688888999998887532211011 1111
Q ss_pred HHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Q 013489 134 FLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI- 212 (442)
Q Consensus 134 ~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~- 212 (442)
....++.+. .. ..+.......+..++...... ........++...+.+....| ++..|..+++.++..
T Consensus 97 ~~~~l~~~~----~~-----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 97 LKTLIEKFE----QV-----PDSLDDQIFVCEKSIEFAKRE-KRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHC----SC-----CSCHHHHHHHHHHHHHHHHHS-SCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hC-----CCCHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH
Confidence 111111110 00 022334445556665554332 122334678888999999999 999999999999876
Q ss_pred -----chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 213 -----SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 213 -----~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.+..++++...+.+....|++.+|+.+|++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2344678999999999999999999999999864
No 407
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.014 Score=43.17 Aligned_cols=63 Identities=17% Similarity=0.060 Sum_probs=53.8
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCcHHHHH
Q 013489 33 EQSSGDPGRVQLLYERAITDFPVSSD-LWLDYTQYLDKTLKVGNVVRDVYSRATKNCPWVGELWV 96 (442)
Q Consensus 33 e~~~g~~~~~~~lyERal~~~p~~~~-lW~~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~lW~ 96 (442)
....|+++.+...|++++..+|.+.. +|...+..+... +..+.+...|++++...|.....|.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34578999999999999999999999 999988876644 4667899999999999999888773
No 408
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.61 E-value=0.079 Score=51.23 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhcccHHH
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG-KDMVSARGVWERLLKISG-----AMLEAWQSYISMEIELDHINE 235 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~-~~~~~ar~i~~~~l~~~~-----~~~~~w~~~~~~e~~~g~~~~ 235 (442)
+.|++++.+++..+...+....+|..++-++.+.. +++....++|...+...| .++.+|..++-+....+++++
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 45677888888887665556778888888777664 123344444444444455 567799999999999999998
Q ss_pred HHHHHHH
Q 013489 236 ARSIYKR 242 (442)
Q Consensus 236 ar~i~~r 242 (442)
|...+-.
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8865444
No 409
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.59 E-value=0.1 Score=47.43 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHhCChhhHHH--HHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHH
Q 013489 106 RASEEEISTVFEKSLLCAFSTFEE--YLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLR 183 (442)
Q Consensus 106 ~~~~~~~~~i~~~al~~~~~~~~~--~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~ 183 (442)
.++.+.+..++++++......... ++.++.. +..+. .. ..++......|++|+...... .+......
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~~---~~------~~~~~~Ai~~~~~al~~~~~~-~~~~~~~~ 156 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYY-VAAYV---LK------KVDYEYCILELKKLLNQQLTG-IDVYQNLY 156 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHHHH---TT------SSCHHHHHHHHHHHHHTCCCC-SCTTHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHH-HHHHH---Hc------ccCHHHHHHHHHHHHHHhccc-ccHHHHHH
Confidence 588899999999999754432221 1212211 11110 00 023333444555555522110 11112345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI-------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-------~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
++...+.++...| +++.|..+|++++.. .+....++...+.+....|+++.|...|++|+..
T Consensus 157 ~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 157 IENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6777888888888 999999999999964 2333458888999999999999999999999964
No 410
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.57 E-value=0.021 Score=42.43 Aligned_cols=67 Identities=12% Similarity=-0.100 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 180 GLLRLYAYWAHLEQSMGKD--MVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~--~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
....++..++......++. ...|+.++++++..+|+++..++.........|+++.|...+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456888888887665522 689999999999999999999988999998999999999999999974
No 411
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.42 E-value=0.053 Score=39.90 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=53.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013489 189 AHLEQSMGKDMVSARGVWERLLKISGAMLE-AWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (442)
Q Consensus 189 a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~-~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (442)
+......| +++.|...|++++..+|++.. +|...+......|+++.|...|++++.. .++.+.
T Consensus 7 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 70 (99)
T 2kc7_A 7 IKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPA 70 (99)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHH
Confidence 34445667 899999999999999999998 9999999999999999999999999973 344443
No 412
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.40 E-value=0.21 Score=45.87 Aligned_cols=190 Identities=10% Similarity=0.000 Sum_probs=112.8
Q ss_pred hHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcchhhHHHHHHH
Q 013489 5 RAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFP--VSSDLWLDYTQYLDKTLKVGNVVRDVYS 82 (442)
Q Consensus 5 r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p--~~~~lW~~Y~~~l~~~~~~~~~~~~v~e 82 (442)
...|+..+...+. ....+.-.+......|+++.+..+++++|...| .+.++....+..+... +..+.++++++
T Consensus 86 ~~~l~~l~~~~~~----~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~ 160 (310)
T 3mv2_B 86 IEELENLLKDKQN----SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFD 160 (310)
T ss_dssp CHHHHHTTTTSCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC----CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 3456666655332 222334444555567999999999999999887 8889999998877754 45678999999
Q ss_pred HHHHcCC---Cc-HHHHHHHHHH---HHHccCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHhhccCccchhh
Q 013489 83 RATKNCP---WV-GELWVRSLLS---LERSRASEEEISTVFEKSLLCAFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVL 155 (442)
Q Consensus 83 rAl~~~p---~s-~~lW~~y~~~---le~~~~~~~~~~~i~~~al~~~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~ 155 (442)
+.....| |. ..+...++.. +-...+....+-.+|+.+....+. +.....++.. ++ +. .
T Consensus 161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~---~~--~~---------g 225 (310)
T 3mv2_B 161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNL---HL--QQ---------R 225 (310)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHH---HH--HH---------T
T ss_pred HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHH---HH--Hc---------C
Confidence 9988888 22 2333333321 222234677889999997765443 2111112211 11 11 2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcC----chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKN----TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~----~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
++......++...... ..+.. .+...+.....+-+....| + .|.+++.++.+.+|+++-
T Consensus 226 ~~~eAe~~L~~l~~~~-p~~~~k~~~~p~~~~~LaN~i~l~~~lg-k--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDY-YSVEQKENAVLYKPTFLANQITLALMQG-L--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp CHHHHHHHHHHHHSHH-HHTTTCHHHHSSHHHHHHHHHHHHHHTT-C--TTHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHhc-ccccccccCCCCCHHHHHHHHHHHHHhC-h--HHHHHHHHHHHhCCCChH
Confidence 3333333333221110 00000 1234556666666777778 5 788999999999998765
No 413
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.39 E-value=0.0029 Score=55.67 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=32.7
Q ss_pred CHHHHHHHhccCCCeeEEEEeeC----CCCCCCcceEEEEee
Q 013489 404 TYEDLRRFFSDVGGVSSIRILHD----KFTGKSRVVQSDIYT 441 (442)
Q Consensus 404 ~~~~l~~~f~~~G~i~~~~~~~~----~~~g~~~g~~fv~f~ 441 (442)
.+++|+..|+.||.|.++.|+.+ +.+|+++|++||+|.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~ 183 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS 183 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEES
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEEC
Confidence 56789999999999999999854 345699999999995
No 414
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.34 E-value=0.015 Score=43.25 Aligned_cols=68 Identities=12% Similarity=-0.090 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013489 54 PVSSDLWLDYTQYLDKTLK--VGNVVRDVYSRATKNCPWVGELWVRSLLSLERSRASEEEISTVFEKSLLC 122 (442)
Q Consensus 54 p~~~~lW~~Y~~~l~~~~~--~~~~~~~v~erAl~~~p~s~~lW~~y~~~le~~~~~~~~~~~i~~~al~~ 122 (442)
|.++++|..|+..+.-..+ ..+.+..+|++|+..-|.+...+..... .....++...+...|++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~-~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIAN-DHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 4444555555444432211 1233444555555555544444433332 222234444455555554443
No 415
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.20 E-value=0.53 Score=46.60 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHH
Q 013489 180 GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI-SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICH 258 (442)
Q Consensus 180 ~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~ 258 (442)
+....|...+....+.| +++.|.++|+.+... ..-+...|...+....+.|+++.|..+|+......+.+ ....|.
T Consensus 103 Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~ 179 (501)
T 4g26_A 103 PNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELA 179 (501)
T ss_dssp CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHH
Confidence 34446777777778888 899999999998876 33346678888888888899999999999988754433 245777
Q ss_pred HHHHHHHHhCCHhhHHHHHHh
Q 013489 259 AWLRFEREYGTLEDFDHSVQK 279 (442)
Q Consensus 259 ~~~~fE~~~G~~~~~~~~~~~ 279 (442)
..+.--...|..+....++++
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHH
Confidence 888888888888776665554
No 416
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0066 Score=44.43 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=33.1
Q ss_pred eEEEcCCCC----CCCH----HHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINL----KATY----EDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~----~~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
||+|...|. +.-. .+|.+.|++||.|..++++.|+ +||+|.
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~ 57 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFL 57 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEES
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEEC
Confidence 899888762 2333 5788999999999999999973 899994
No 417
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.17 E-value=0.13 Score=50.72 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------chhHHHHHHHHHHHH
Q 013489 157 YSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISME 227 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~e 227 (442)
+......+++++......+.. ++.....+...+.++...| +++.|..+++++|.. +|+-...+...+.+.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 403 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN 403 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 444455566676666665554 3445677888899999999 999999999999976 344455778888888
Q ss_pred HhcccHHHHHHHHHHHHhc
Q 013489 228 IELDHINEARSIYKRCYSK 246 (442)
Q Consensus 228 ~~~g~~~~ar~i~~ral~~ 246 (442)
...|+++.|..+|++|+..
T Consensus 404 ~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 404 WHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999953
No 418
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.64 E-value=0.11 Score=50.48 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------chhHHHHHHHHHHH
Q 013489 156 DYSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISM 226 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~ 226 (442)
++......+++++......+.. ++.....+...+.++...| +++.|..+++++|.. +|+-...+...+.+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3445556677777766666654 3344577778888999999 999999999999976 34445577888888
Q ss_pred HHhcccHHHHHHHHHHHHh
Q 013489 227 EIELDHINEARSIYKRCYS 245 (442)
Q Consensus 227 e~~~g~~~~ar~i~~ral~ 245 (442)
...+|+++.|..+|++|+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8899999999999999985
No 419
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.17 E-value=0.66 Score=45.71 Aligned_cols=127 Identities=12% Similarity=0.018 Sum_probs=83.9
Q ss_pred ccCCHHHHHHHHHHHHhC-----ChhhHH---HHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhc
Q 013489 105 SRASEEEISTVFEKSLLC-----AFSTFE---EYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMK 176 (442)
Q Consensus 105 ~~~~~~~~~~i~~~al~~-----~~~~~~---~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~ 176 (442)
.++..+++..+++++|.. +....+ .+-.+-..+ .. ..++......+++++......+.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y-----~~---------~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL-----SY---------LQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-----HH---------TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HH---------hcCHHHHHHHHHHHHHHHHHHcC
Confidence 467888899999998842 332221 111111111 11 14666777888999988887777
Q ss_pred Cch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 177 NTD-GLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 177 ~~~-~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
..+ .....+...+.++...| +++.|..+|++++.. +|.-.++-..........+.+..|-.+|.++...
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 44567777899999999 999999999999976 2333444444444555566777888888877653
No 420
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.96 E-value=2 Score=40.35 Aligned_cols=156 Identities=11% Similarity=0.008 Sum_probs=78.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh--c--chhhHHHHHHHHHHHcCCCcHHHHHHHHH--HHHHccC--C---HHHHHH
Q 013489 46 YERAITDFPVSSDLWLDYTQYLDKT--L--KVGNVVRDVYSRATKNCPWVGELWVRSLL--SLERSRA--S---EEEIST 114 (442)
Q Consensus 46 yERal~~~p~~~~lW~~Y~~~l~~~--~--~~~~~~~~v~erAl~~~p~s~~lW~~y~~--~le~~~~--~---~~~~~~ 114 (442)
-+|+...-|.+.+.|-.|+.-.... . .....++.+|++|+..-|.....|..... .+....+ . ...++.
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 4556666777777777776543321 1 12355788888888888887665554221 1111111 1 112222
Q ss_pred HHHHHHhC--ChhhHHHHHHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHH
Q 013489 115 VFEKSLLC--AFSTFEEYLDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLE 192 (442)
Q Consensus 115 i~~~al~~--~~~~~~~~~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e 192 (442)
.+..+... .+.....+..+-... .. ..++......+++|+.. ++. ...|...+.+.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~--l~------------~gd~d~A~~~l~rAl~L-------n~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSA--LV------------KGKTDESYQAINTGIDL-------EMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHH--HH------------HTCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHH--Hh------------CCCHHHHHHHHHHHHhc-------CCC-HHHHHHHHHHH
Confidence 33322111 111111111000000 00 02333333444444443 222 33455667777
Q ss_pred HHcCCCHHHHHHHHHHHHHhchhHHH-HHHHHH
Q 013489 193 QSMGKDMVSARGVWERLLKISGAMLE-AWQSYI 224 (442)
Q Consensus 193 ~~~~~~~~~ar~i~~~~l~~~~~~~~-~w~~~~ 224 (442)
...| +.+.|.+.|++++..+|.... .|.+-+
T Consensus 321 ~~~G-~~~eA~e~~~~AlrL~P~~~t~~~~~~l 352 (372)
T 3ly7_A 321 EMKG-MNREAADAYLTAFNLRPGANTLYWIENG 352 (372)
T ss_dssp HHTT-CHHHHHHHHHHHHHHSCSHHHHHHHHHS
T ss_pred HHCC-CHHHHHHHHHHHHhcCCCcChHHHHhCc
Confidence 7778 999999999999999887643 444433
No 421
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.78 E-value=0.02 Score=42.11 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=33.5
Q ss_pred eEEEcCCCCC------CCH---HHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLK------ATY---EDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~------~~~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
||+|..++.. ..+ .+|.+.|.+||.|..++++.|+ +||+|.
T Consensus 17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~ 66 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFA 66 (95)
T ss_dssp EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECS
T ss_pred eEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEc
Confidence 9999988743 222 4688999999999999999984 899994
No 422
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.11 E-value=0.098 Score=38.49 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.||+-+.|.+....||..+|++||. ..|+++.|. -|||.|.
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~ 57 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLS 57 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECS
T ss_pred eEEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEec
Confidence 4555599999999999999999994 578999983 7888874
No 423
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.84 E-value=1.2 Score=35.20 Aligned_cols=107 Identities=7% Similarity=0.025 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh----cccHHHHHH
Q 013489 163 TFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIE----LDHINEARS 238 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~----~g~~~~ar~ 238 (442)
.+++|+.++.++....+.... .+.+... +..++.|...|+++... .+...+.....+... .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~-g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNS-QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCT-TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHc-CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 344555555544443333222 4444433 34788899999999987 334445555555554 568999999
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhh
Q 013489 239 IYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKV 280 (442)
Q Consensus 239 i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~ 280 (442)
.|++|... ..+...+..=.-++.-.|...++..++.-.
T Consensus 83 ~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 83 YYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 99999863 445555554445555566666677666544
No 424
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.77 E-value=0.37 Score=46.66 Aligned_cols=86 Identities=9% Similarity=-0.044 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------chhHHHHHHHHHHHHHh
Q 013489 159 LIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIE 229 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~e~~ 229 (442)
.....+++++......+.. ++.....+...+.++...| ++++|..+++++|.. +|+-...+...+.+...
T Consensus 305 ~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 305 QVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 3334445554443333333 3344577777888888899 999999999999966 34444577888888888
Q ss_pred cccHHHHHHHHHHHHh
Q 013489 230 LDHINEARSIYKRCYS 245 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~ 245 (442)
.|+++.|..+|++|+.
T Consensus 384 ~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 384 QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999985
No 425
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.20 E-value=0.19 Score=37.15 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.||+-+.|.+....||..+|++|| -..|+++.|. -|||.|.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~ 47 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLS 47 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEE
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEec
Confidence 455559999999999999999999 5688999983 7888874
No 426
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.24 Score=37.26 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=41.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDV-----GGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
...++|-+-|||..++...++.+..++ |.|+.+-++.| .|-|+|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~ 70 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFR 70 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECS
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEc
Confidence 345699999999999999999999999 99999999998 367899985
No 427
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.53 E-value=2.2 Score=34.49 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhc-h-hHHHHHHHHHHHHHhcc
Q 013489 156 DYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMG--KDMVSARGVWERLLKIS-G-AMLEAWQSYISMEIELD 231 (442)
Q Consensus 156 ~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~--~~~~~ar~i~~~~l~~~-~-~~~~~w~~~~~~e~~~g 231 (442)
++..++..|.+.... .+...+....|+-...... .++.++..+++.+++.. | ++.+.+...+-...+.|
T Consensus 13 ~l~~~~~~y~~e~~~-------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHT-------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcc-------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 344556666665441 2223334444444444332 14669999999999997 7 55677777776778899
Q ss_pred cHHHHHHHHHHHHhcccCCCChH
Q 013489 232 HINEARSIYKRCYSKRFTGTGSE 254 (442)
Q Consensus 232 ~~~~ar~i~~ral~~~~~~~~~~ 254 (442)
++++|+..++++|. ..+++.+
T Consensus 86 ~Y~~A~~y~~~lL~--ieP~n~Q 106 (152)
T 1pc2_A 86 EYEKALKYVRGLLQ--TEPQNNQ 106 (152)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHh--cCCCCHH
Confidence 99999999999997 3444443
No 428
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.81 E-value=1.4 Score=32.75 Aligned_cols=69 Identities=17% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 013489 157 YSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISM 226 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~ 226 (442)
+.....-|+.|+...............++..++......| +++.|..++++++...|++..+.....-+
T Consensus 21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 3333344555555442221112345678888888888999 99999999999999999887665444433
No 429
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.67 E-value=3.1 Score=30.79 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCCh
Q 013489 187 YWAHLEQSMGKDMVSARGVWERLLKIS-------GAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGS 253 (442)
Q Consensus 187 ~~a~~e~~~~~~~~~ar~i~~~~l~~~-------~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~ 253 (442)
..+.+....+ ++..|..-|+.+++.. .....++..++......|+++.|..++++|+. +.++.+
T Consensus 10 ~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 10 ELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 3455666777 9999999999999873 24567899999999999999999999999997 344544
No 430
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=90.93 E-value=12 Score=36.09 Aligned_cols=47 Identities=17% Similarity=0.030 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------chhHHHHHHHHHHHHHh
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI------------SGAMLEAWQSYISMEIE 229 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~------------~~~~~~~w~~~~~~e~~ 229 (442)
..+|..++-++...+ +++.|....-..... .+.+.++....+.|...
T Consensus 282 ~~~w~e~~~ly~~~~-e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 282 AHLWAELVFLYDKYE-EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp TTCHHHHHHHHHHTT-CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 347777777777777 777776543332211 23345666666666653
No 431
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.59 E-value=1.4 Score=42.51 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=65.8
Q ss_pred cCCCHHHHHHHHHHHHHh--------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---ccCCCChHHHHHHHHHH
Q 013489 195 MGKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK---RFTGTGSEDICHAWLRF 263 (442)
Q Consensus 195 ~~~~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~---~~~~~~~~~i~~~~~~f 263 (442)
.| +++.|..+|+++|.. +|+-.......+......|+++.|..+|++++.. .+..+.| .+...+.++
T Consensus 311 ~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nL 388 (433)
T 3qww_A 311 YK-SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-NVASMWLKL 388 (433)
T ss_dssp TS-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHH
Confidence 35 789999999999975 3444557777888888899999999999999954 3444555 566677777
Q ss_pred HHHhCCHhhHHHHHHhhchhHHHH
Q 013489 264 EREYGTLEDFDHSVQKVTPRLEEL 287 (442)
Q Consensus 264 E~~~G~~~~~~~~~~~~~~~~~~~ 287 (442)
-..|.+...+++|...+..+++..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Confidence 666665666666666655555443
No 432
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.42 E-value=0.82 Score=33.41 Aligned_cols=50 Identities=6% Similarity=0.008 Sum_probs=39.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCC--CcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK--SRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~~fv~f~ 441 (442)
++|-|.+||++.|++++.+.++..+.+.-...+..+.+.+ ..+-|||.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~ 53 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFK 53 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEES
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeC
Confidence 4789999999999999999999998877777776654443 3357788885
No 433
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.87 E-value=2.2 Score=34.46 Aligned_cols=87 Identities=7% Similarity=-0.124 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--chhhHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHccCCHHHHHH
Q 013489 39 PGRVQLLYERAITDFPVSSDLWLDYTQYLDKTL--KVGNVVRDVYSRATKNC-P-WVGELWVRSLLSLERSRASEEEIST 114 (442)
Q Consensus 39 ~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~--~~~~~~~~v~erAl~~~-p-~s~~lW~~y~~~le~~~~~~~~~~~ 114 (442)
...++..|++.+...|.+.+...+|+--|.+.. .+......+|+..++.- | ...+.+....... -..++.+.++.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~-~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN-YRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH-HHccCHHHHHH
Confidence 345667788888888888888888887666432 13345777888888876 5 2223333323223 34688889999
Q ss_pred HHHHHHhCChhh
Q 013489 115 VFEKSLLCAFST 126 (442)
Q Consensus 115 i~~~al~~~~~~ 126 (442)
.++++|...|.+
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 999999887764
No 434
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.25 E-value=1.9 Score=32.05 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=34.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcc-----CCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 390 DECTAFLSNINLKATYEDLRRFFSD-----VGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~l~~~f~~-----~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
-..+|.|.|||..+.++.|.-+|.. -|.|.++.... +-|+|+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~ 55 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFR 55 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEES
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEc
Confidence 3569999999999999999999986 24666665422 57789885
No 435
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=86.42 E-value=0.44 Score=46.17 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=35.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.++|||. .|..+++.+|.+.|++||+|.++.+-.+ .| -|+.|+|.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~ 97 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFC 97 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeC
Confidence 4699998 7999999999999999999999866543 23 59999996
No 436
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.67 E-value=4.3 Score=39.09 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=64.7
Q ss_pred HcCCCHHHHHHHHHHHHHh--------chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---ccCCCChHHHHHHHHH
Q 013489 194 SMGKDMVSARGVWERLLKI--------SGAMLEAWQSYISMEIELDHINEARSIYKRCYSK---RFTGTGSEDICHAWLR 262 (442)
Q Consensus 194 ~~~~~~~~ar~i~~~~l~~--------~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~---~~~~~~~~~i~~~~~~ 262 (442)
..| .++.|..++++++.. +|....+....+......|+++.|..++++++.. .+..+.| .+...+.+
T Consensus 299 ~~g-~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~l~n 376 (429)
T 3qwp_A 299 AHW-KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-VRGVQVMK 376 (429)
T ss_dssp HTT-CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHH
T ss_pred hhc-cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-HHHHHHHH
Confidence 345 899999999999965 3444567777788888899999999999999854 3555555 46666666
Q ss_pred HHHHhCCHhhHHHHHHhhchhHHHH
Q 013489 263 FEREYGTLEDFDHSVQKVTPRLEEL 287 (442)
Q Consensus 263 fE~~~G~~~~~~~~~~~~~~~~~~~ 287 (442)
+-..|.+...+++|...+...++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6666655555666665555544443
No 437
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.30 E-value=16 Score=34.53 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 29 YLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 29 y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
.++.....|++..+....++++..+|.++.+|...+..+...+ ....+..+|++..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD-RQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 3333444566666666666667677777777776666665433 33446666666544
No 438
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=79.33 E-value=20 Score=27.76 Aligned_cols=111 Identities=11% Similarity=-0.071 Sum_probs=67.5
Q ss_pred hhhHHHHHHhhcCCCCChHhHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cchhhHHHH
Q 013489 3 NARAHLEEQISRQDLSDSEKFQQYMIYLKYEQSSGDPGRVQLLYERAITDFPVSSDLWLDYTQYLDKT---LKVGNVVRD 79 (442)
Q Consensus 3 ~~r~~yE~~l~~~~~~~~~~~~~w~~y~~~e~~~g~~~~~~~lyERal~~~p~~~~lW~~Y~~~l~~~---~~~~~~~~~ 79 (442)
++...|+.+...... .. . +..+....+..+.+...|++|... .++..+.....++..- .++.+.+..
T Consensus 13 ~A~~~~~~aa~~g~~----~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 13 KAIQYYVKACELNEM----FG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHTTCT----TH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCH----hh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 355667777655432 11 1 333233345667788899999886 5666666666555431 356677889
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCChh
Q 013489 80 VYSRATKNCPWVGELWVRSLLSLERS---RASEEEISTVFEKSLLCAFS 125 (442)
Q Consensus 80 v~erAl~~~p~s~~lW~~y~~~le~~---~~~~~~~~~i~~~al~~~~~ 125 (442)
.|++|+.. .....+......+..- ..+.+.+...|++|...+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999885 3334444433323321 46678888889988876544
No 439
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.88 E-value=64 Score=33.30 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRC 243 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ra 243 (442)
..+...-++|....+ +++-|.++-.+++...|+....|...+......|+++.|.-.++-+
T Consensus 337 ~~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346666788888877 9999999999999999999999999999999999999999777665
No 440
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=72.50 E-value=19 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhcCc-hhhHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhchhHH
Q 013489 164 FQRASDYLSEQMKNT-DGLLRLYAY-WAHLEQSMGKDMVSARGVWERLLKISGAML 217 (442)
Q Consensus 164 ~~~a~~~l~~~~~~~-~~~~~l~~~-~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~ 217 (442)
..+++.+|...+... +..-+-.++ .|--.+++| ++++|+...+.+|+..|++.
T Consensus 54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg-~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCH
Confidence 345556665555443 222223333 333445556 77777777777777777544
No 441
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=65.88 E-value=6.4 Score=28.94 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=32.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCC--CcceEEEEee
Q 013489 391 ECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGK--SRVVQSDIYT 441 (442)
Q Consensus 391 ~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~~fv~f~ 441 (442)
..+|-|..||+..|++++.+.++..-.+.-...+..+.+.+ .-.-|||.|+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~ 61 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFR 61 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEES
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeC
Confidence 45899999999999999887777654433223333322222 2246677774
No 442
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.31 E-value=31 Score=26.94 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAM-LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~-~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (442)
+-..|+-+-.....++.++..+++.+++..|.. -+.+...+--..+.|++++||...+.+|. ..+++.+
T Consensus 44 F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 44 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 333344444333335668888899999887744 45554444455578999999999999996 3445443
No 443
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=62.32 E-value=24 Score=27.57 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhcCchhh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 163 TFQRASDYLSEQMKNTDGL-LRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 163 ~~~~a~~~l~~~~~~~~~~-~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
...+++.+|...+...+.. -+.+-+.|-=.+++| +++.||+..+.+|+..|++..
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg-dY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCCHH
Confidence 3455666665555444422 333333444456778 999999999999999887654
No 444
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=59.16 E-value=2.6 Score=32.07 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCceEEEcCCCCCCCHHH
Q 013489 390 DECTAFLSNINLKATYED 407 (442)
Q Consensus 390 ~~~~v~v~nl~~~~~~~~ 407 (442)
...+|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 345899999999998863
No 445
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.80 E-value=28 Score=27.55 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHH-HHhcccHHHHHHHHHHHHh
Q 013489 199 MVSARGVWERLLKISGAMLEAWQSYISM-EIELDHINEARSIYKRCYS 245 (442)
Q Consensus 199 ~~~ar~i~~~~l~~~~~~~~~w~~~~~~-e~~~g~~~~ar~i~~ral~ 245 (442)
+.++..+++.++...|..-.=++.|+-+ ..+.|++++||...+..|.
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444445555554444222222222221 1234555555555555554
No 446
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=54.98 E-value=70 Score=24.61 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhc-hhH-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChH
Q 013489 198 DMVSARGVWERLLKIS-GAM-LEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSE 254 (442)
Q Consensus 198 ~~~~ar~i~~~~l~~~-~~~-~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~ 254 (442)
++.++..+++..+... |.. -+.....+-...+.|++++||..++..|. ..+++++
T Consensus 53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHH
Confidence 3456888899988885 633 34444444455678999999999999997 3555554
No 447
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.43 E-value=31 Score=32.92 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKIS---GAMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~---~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.+...+++....| +++.|.++|.++...+ ....++|+.-+.+....+|...+...+.+|-..
T Consensus 133 ~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5566788888888 8999999999988763 344678999999888889999999888888653
No 448
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=52.00 E-value=53 Score=30.75 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 186 AYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 186 ~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
...+..+...| +...+...+..++..+|-+-.+|..++......|+...|...|+++..
T Consensus 175 ~~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33556666778 899999999999999999888999999999999999999999888754
No 449
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=51.04 E-value=9.6 Score=31.60 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=14.1
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 417 GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 417 ~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.|.++.+ ++++|||||+|.
T Consensus 41 ~v~~~~~------~~~~g~afV~F~ 59 (198)
T 2yh0_A 41 PVLAVQI------NQDKNFAFLEFR 59 (198)
T ss_dssp SEEEEEE------ETTTTEEEEEES
T ss_pred ceEEeEe------cCCCCEEEEEeC
Confidence 5666654 456899999995
No 450
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=47.34 E-value=74 Score=25.11 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhcCchhhHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhchhHHH
Q 013489 162 ETFQRASDYLSEQMKNTDGLLRLYAYWAHL-EQSMGKDMVSARGVWERLLKISGAMLE 218 (442)
Q Consensus 162 ~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~-e~~~~~~~~~ar~i~~~~l~~~~~~~~ 218 (442)
....+++.+|+..+...+..-+-.++|.-+ .++++ +++.||.+.+.+|+..|++..
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHH
Confidence 344678888877776444333344454443 45666 999999999999999887543
No 451
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=45.13 E-value=2.2e+02 Score=30.62 Aligned_cols=83 Identities=7% Similarity=-0.151 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKI----SGAMLEAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHA 259 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~----~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~ 259 (442)
-+..++.-..+.| +++.|.++|..+-.. ..-++..|...|+-..+.|.++.|..+|+......+.++ ..-|..
T Consensus 129 TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD--vvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD--LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc--HHHHHH
Confidence 3445566667777 788888888665432 222355677777777777888888888888776544433 223444
Q ss_pred HHHHHHHhCC
Q 013489 260 WLRFEREYGT 269 (442)
Q Consensus 260 ~~~fE~~~G~ 269 (442)
.|+--...|.
T Consensus 206 LI~glcK~G~ 215 (1134)
T 3spa_A 206 ALQCMGRQDQ 215 (1134)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhCCC
Confidence 4443333444
No 452
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.37 E-value=1.3e+02 Score=28.69 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-c---h--hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 013489 182 LRLYAYWAHLEQSMGKDMVSARGVWERLLKI-S---G--AMLEAWQSYISMEIELDHINEARSIYKRCYSK 246 (442)
Q Consensus 182 ~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~-~---~--~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~~ 246 (442)
.++....+.+....| ++..|..++..+..- . . .-+++++.=+.+....+|+.+|+.++.++...
T Consensus 137 arl~~~La~i~e~~g-~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEG-KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456677888888888 899999998887743 2 1 12568888888888889999999999997644
No 453
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=42.95 E-value=23 Score=28.38 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=13.8
Q ss_pred CeeEEEEeeCCCCCCCcceEEEEee
Q 013489 417 GVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 417 ~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.|.++.+. +++|||||+|.
T Consensus 41 ~v~~~~~~------~~~g~afV~f~ 59 (172)
T 2g4b_A 41 PVLAVQIN------QDKNFAFLEFR 59 (172)
T ss_dssp SEEEEEEE------TTTTEEEEEES
T ss_pred ceeeeEec------CCCCEEEEEeC
Confidence 56666553 45899999995
No 454
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=42.30 E-value=39 Score=33.08 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=32.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 392 CTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 392 ~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
..++|+ +|..+...+|.++|+.||. .+|+++.+. .|||.|.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~ 481 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLS 481 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECS
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEEC
Confidence 355665 8889999999999999995 578887773 6888774
No 455
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=39.71 E-value=1.1e+02 Score=24.94 Aligned_cols=60 Identities=15% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH---------HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 185 YAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---------AWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 185 ~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~---------~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
+...++-....+ -++.|.-+...++....++.+ +...+++.....|++.+|...|++||+
T Consensus 23 l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
No 456
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.36 E-value=3.9e+02 Score=28.78 Aligned_cols=99 Identities=8% Similarity=-0.057 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHc-CCCcHHHHHHHH
Q 013489 25 QYMIYLKYEQSSGDPGRVQLLYERAIT----DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATKN-CPWVGELWVRSL 99 (442)
Q Consensus 25 ~w~~y~~~e~~~g~~~~~~~lyERal~----~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~~-~p~s~~lW~~y~ 99 (442)
.+..+|+-.-+.|..++|..+|+..-. -+.-+...|...|.-+-+.+ ..+.|..+|+..... |.-+.-.|...|
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 588888888889999999999966432 35567788888887776554 457799999999873 333456667767
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCh
Q 013489 100 LSLERSRASEEEISTVFEKSLLCAF 124 (442)
Q Consensus 100 ~~le~~~~~~~~~~~i~~~al~~~~ 124 (442)
..+-+.....+.+..+|+.+...|.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 6666644456788899999886654
No 457
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=35.94 E-value=67 Score=24.47 Aligned_cols=46 Identities=9% Similarity=-0.004 Sum_probs=33.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 389 TDECTAFLSNINLKATYEDLRRFFSDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 389 ~~~~~v~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
.+.+.|-|-+.|+.. ...+-..|++||.|.+..... ...+-+|.|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~ 67 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQ 67 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEES
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeC
Confidence 346789999999884 666778899999999877521 1246666663
No 458
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.73 E-value=1.1e+02 Score=21.41 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=11.2
Q ss_pred cccHHHHHHHHHHHHh
Q 013489 230 LDHINEARSIYKRCYS 245 (442)
Q Consensus 230 ~g~~~~ar~i~~ral~ 245 (442)
.|+++.|-.+|..|+.
T Consensus 32 ~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 32 EGNAEEAITNYKKAIE 47 (83)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4677777777777763
No 459
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=35.36 E-value=1.6e+02 Score=25.97 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHH---HHHHHHHHH
Q 013489 165 QRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLE---AWQSYISME 227 (442)
Q Consensus 165 ~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~---~w~~~~~~e 227 (442)
..++..+...+...|...++=..+.++.+-.| +.++|.+-++-+.+.+|.... ++...|..|
T Consensus 14 ~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 14 QQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 34444444455555666666667777777777 888888888888888777643 344444444
No 460
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.51 E-value=2.4e+02 Score=24.26 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 157 YSLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 157 ~~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
......+|+.|.++....+.+ +|-.+-+.+.|+-|++...+++++|..+-..++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567888888876555554 444678888899988887769998887755554
No 461
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=32.08 E-value=2.4e+02 Score=24.18 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013489 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~ 211 (442)
.....+|+.|.++....+.+ +|-.+.+-+.|+-|++...+++++|..+-..++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34557788888776544544 4445778888888888876688888887665553
No 462
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.79 E-value=1.3e+02 Score=20.99 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=12.8
Q ss_pred hcccHHHHHHHHHHHHh
Q 013489 229 ELDHINEARSIYKRCYS 245 (442)
Q Consensus 229 ~~g~~~~ar~i~~ral~ 245 (442)
..|+++.|..+|..|+.
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 35788888888888873
No 463
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=31.31 E-value=2.7e+02 Score=24.39 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 159 LIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 159 ~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
....+|+.|.++....+.+ +|-.+-+.+.|+-|++.+.+++++|..+-..++
T Consensus 153 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 153 STLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4456677777665444444 344566777777777776557777777655554
No 464
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=31.06 E-value=1.7e+02 Score=25.08 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=28.4
Q ss_pred hcCChhhHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 013489 35 SSGDPGRVQLLYERAIT--------DFPVSSDLWLDYTQYLDKTLKVGNVVRDVYSRATK 86 (442)
Q Consensus 35 ~~g~~~~~~~lyERal~--------~~p~~~~lW~~Y~~~l~~~~~~~~~~~~v~erAl~ 86 (442)
..|+.+.+...|+.|+. .+|..-.|-++|.-|+....++++.+..+-..|+.
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555666665543 13444456666666665555555555555555544
No 465
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=30.69 E-value=3.6e+02 Score=27.72 Aligned_cols=129 Identities=12% Similarity=0.048 Sum_probs=67.7
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC--------ChhhHH----
Q 013489 62 DYTQYLDKTLKVGNVVRDVYSRATKNCPWVGE-LWVRSLLSLERSRASEEEISTVFEKSLLC--------AFSTFE---- 128 (442)
Q Consensus 62 ~Y~~~l~~~~~~~~~~~~v~erAl~~~p~s~~-lW~~y~~~le~~~~~~~~~~~i~~~al~~--------~~~~~~---- 128 (442)
..+.|+.....-.+.+..+|++-....|.... +...++..++......-++-++...+++. +.....
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 33444433333345677888888887785433 34445544443222222344555555531 111110
Q ss_pred -HH-HHHHHHHHHHHHHHhhccCccchhhhHHHHHHHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 013489 129 -EY-LDLFLTRIDGLRRRILFSGEVEGVLDYSLIRETFQRASDYLSEQMKNTDGLLRLYAYWAHLEQSMGKDMVSARGVW 206 (442)
Q Consensus 129 -~~-~~~~~~~~~~l~rr~~~~~~~~~~~~~~~~r~~~~~a~~~l~~~~~~~~~~~~l~~~~a~~e~~~~~~~~~ar~i~ 206 (442)
.+ ..+...-+++|..+ .-|+-|+.+-.+++...|....-|-..++.+..++ +++.|.=.+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K-----------------~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-d~e~ALLtL 394 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNR-----------------GDYELALGVSNTSTELALDSFESWYNLARCHIKKE-EYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhcc-----------------CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 01 12222233334322 22344555555555446777889999999999999 999887544
Q ss_pred HH
Q 013489 207 ER 208 (442)
Q Consensus 207 ~~ 208 (442)
+.
T Consensus 395 NS 396 (754)
T 4gns_B 395 NS 396 (754)
T ss_dssp HH
T ss_pred hc
Confidence 33
No 466
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.50 E-value=1.2e+02 Score=24.97 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWER 208 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~ 208 (442)
.|...++.-...| ++.-|..+|.+
T Consensus 36 ~Wk~Lg~~AL~~g-n~~lAe~cy~~ 59 (177)
T 3mkq_B 36 TWERLIQEALAQG-NASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-ChHHHHHHHHH
Confidence 5555555555555 55555555544
No 467
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=29.22 E-value=2.8e+02 Score=24.03 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
.....+|+.|.++....+.+ +|-.+-+.+.|+-|++.+.+++++|..+-..++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34557778887766555544 444577888888888887668888877755544
No 468
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=28.28 E-value=3e+02 Score=24.05 Aligned_cols=53 Identities=11% Similarity=-0.032 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 013489 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLL 210 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l 210 (442)
.....+|+.|.++....+.+ +|-.+-+.+.|+-|++.+.+++++|..+-..++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34557788887766554544 444577888888888887668888877755554
No 469
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=28.09 E-value=1.7e+02 Score=25.85 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 195 MGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 195 ~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.+ ++..+.+.....|+..|.+..+-..++++..-.|+.++|..=++-+..
T Consensus 10 ~g-~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 10 EG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TT-CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34 899999999999999999999999999999999999999998888876
No 470
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.26 E-value=96 Score=29.41 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCHhhHHHHHHhhc
Q 013489 218 EAWQSYISMEIELDHINEARSIYKRCYSKRFTGTGSEDICHAWLRFEREYGTLEDFDHSVQKVT 281 (442)
Q Consensus 218 ~~w~~~~~~e~~~g~~~~ar~i~~ral~~~~~~~~~~~i~~~~~~fE~~~G~~~~~~~~~~~~~ 281 (442)
..+...+++....|+++.|.++|.++..........-+++...++..-..|+...+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3678899999999999999999999887654555566788888888888899888777666653
No 471
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=26.11 E-value=3.3e+02 Score=23.79 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 013489 158 SLIRETFQRASDYLSEQMKN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLK 211 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~ 211 (442)
.....+|+.|.++. ..+.+ +|-.+-+.+.|+-|++...+++++|..+-..++.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34557788888776 44444 4445778888888888876689888887666553
No 472
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.86 E-value=60 Score=24.03 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=26.3
Q ss_pred CceEEEcCCCCCC-CH----HHHHHHhccCCCeeEEEEee
Q 013489 391 ECTAFLSNINLKA-TY----EDLRRFFSDVGGVSSIRILH 425 (442)
Q Consensus 391 ~~~v~v~nl~~~~-~~----~~l~~~f~~~G~i~~~~~~~ 425 (442)
+.+++|.||+.++ +. ..++.+|..++++.......
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk 44 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK 44 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC
Confidence 3599999998876 32 46789999999887755443
No 473
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.58 E-value=1.4e+02 Score=21.30 Aligned_cols=23 Identities=4% Similarity=0.144 Sum_probs=12.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHH
Q 013489 203 RGVWERLLKISGAMLEAWQSYIS 225 (442)
Q Consensus 203 r~i~~~~l~~~~~~~~~w~~~~~ 225 (442)
..++.++...+.++.++...+..
T Consensus 62 ~~V~~~V~~LF~~h~DLl~~F~~ 84 (89)
T 1g1e_B 62 QEVYAQVARLFKNQEDLLSEFGQ 84 (89)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHH
Confidence 35666665555555555555443
No 474
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.55 E-value=2.5e+02 Score=27.23 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013489 184 LYAYWAHLEQSMGKDMVSARGVWERLLKISGAMLEAWQSYISMEIELDHINEARSIYKRCYS 245 (442)
Q Consensus 184 l~~~~a~~e~~~~~~~~~ar~i~~~~l~~~~~~~~~w~~~~~~e~~~g~~~~ar~i~~ral~ 245 (442)
.......+..+.. ....|+..|.+|+...|++-..+...+-+....|+.-.|.-.|-|++.
T Consensus 154 ~l~~LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4445566655555 788999999999999999888888888888777776666666666663
No 475
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=21.83 E-value=4.1e+02 Score=23.31 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhh--cC-chhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 013489 158 SLIRETFQRASDYLSEQM--KN-TDGLLRLYAYWAHLEQSMGKDMVSARGVWERLLKI 212 (442)
Q Consensus 158 ~~~r~~~~~a~~~l~~~~--~~-~~~~~~l~~~~a~~e~~~~~~~~~ar~i~~~~l~~ 212 (442)
.....+|+.|.++....+ .+ +|-.+-+.+.|+-|++.+.+++++|..+-..++..
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345577777777665444 33 44456788888888887766888888776666543
No 476
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.05 E-value=1.4e+02 Score=24.32 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=32.0
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--ccCCCeeEEEEeeCCCCCCCcceEEEEee
Q 013489 393 TAFLSNINLK---------ATYEDLRRFF--SDVGGVSSIRILHDKFTGKSRVVQSDIYT 441 (442)
Q Consensus 393 ~v~v~nl~~~---------~~~~~l~~~f--~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 441 (442)
++.|-|+|.. .+...|++.| +.|.++. |+.+.++ .| +.|++.|.|.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~ 70 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFN 70 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECC
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEec
Confidence 6667777751 3457899977 8998764 5555542 33 7899999996
Done!