BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013490
         (442 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IW0|A Chain A, Structure Of The Chitin Deacetylase From The Fungal
           Pathogen Colletotrichum Lindemuthianum
          Length = 254

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 112 RATSFITDDLWYGIFAGTNPETF--VRADGAFI 142
           RAT F+  + W  I AG+NP+T   +RADG  +
Sbjct: 69  RATFFVNGNNWANIEAGSNPDTIRRMRADGHLV 101


>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
           (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
           Dc3000 At 2.20 A Resolution
 pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
           (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
           Dc3000 At 2.20 A Resolution
          Length = 302

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 375 NVGHQFIPSFTGRSPMHQ 392
           N+ H F+PSF G  P HQ
Sbjct: 208 NIHHSFLPSFVGAKPYHQ 225


>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
           (yp_105254.1) From Burkholderia Mallei Atcc 23344 At
           1.90 A Resolution
 pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
           (yp_105254.1) From Burkholderia Mallei Atcc 23344 At
           1.90 A Resolution
 pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
           (yp_105254.1) From Burkholderia Mallei Atcc 23344 At
           1.90 A Resolution
 pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
           (yp_105254.1) From Burkholderia Mallei Atcc 23344 At
           1.90 A Resolution
          Length = 292

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 375 NVGHQFIPSFTGRSPMHQNNAQ 396
           N+ H F+P F G  P HQ +A+
Sbjct: 198 NIHHSFLPGFKGAKPYHQAHAR 219


>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
           Desulfovibrio Fructosovorans
          Length = 564

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4   GPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQET 57
           GP G   D   VE +  G P   PK  +  E++  +   DPCI  G  V   ET
Sbjct: 504 GPRGPQGDKSPVEEALIGTPIADPKRPV--EILRTVHAFDPCIACGVHVIEPET 555


>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
 pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
           Flavocytochrome C3 Fumarate Reductase
          Length = 566

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 44  PCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVD--LDYPNQ 91
           P +G  S++   ET   +GA++ ++ GN+ +  LT R  A D  L  P Q
Sbjct: 361 PTVGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQ 410


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,880,970
Number of Sequences: 62578
Number of extensions: 608454
Number of successful extensions: 1061
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 6
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)