BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013490
         (442 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4H8F7|TRM5_LEIBR tRNA (guanine(37)-N1)-methyltransferase OS=Leishmania braziliensis
           GN=LBRM_16_0320 PE=3 SV=1
          Length = 698

 Score = 36.2 bits (82), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 96  PLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIPFAEDFNLNNVTT 155
           P P S   G Y+GAVE   +  T +L Y  +  +   + V      +P  ED +L  + +
Sbjct: 234 PSPSSRKRGSYVGAVEVTFASRTVELSYRNYTMSELLSMV------LPLREDADLVAL-S 286

Query: 156 SVKGVGEIGDVHIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTD 215
             + VG I  V++     P   +IG+ ++    +  +    V A +  + + K       
Sbjct: 287 GFEQVGHIAHVNLSAAHLPYADVIGQVILDCNETVSVVVNKVDAISSVFREFK------- 339

Query: 216 FLVVGENQQTFDLEGDSG 233
             ++GE ++  DL GD G
Sbjct: 340 MNIIGERRRADDLGGDVG 357


>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb PE=1 SV=3
          Length = 2146

 Score = 35.4 bits (80), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 4   GPGGVWCDVDVVEFSYYG----APAPTPKEELYTELVDGLRGSDPCIGSGSQVASQETY 58
           GPG  + +   V+   +G     P P    +L+T L D    +DPC+G G+  +S E Y
Sbjct: 229 GPGLQFVNNSTVQNVVFGHCPLTPGPCSDHDLFTRLPDNFCLNDPCMGHGTCSSSPEGY 287


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,141,592
Number of Sequences: 539616
Number of extensions: 8368859
Number of successful extensions: 14809
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 14803
Number of HSP's gapped (non-prelim): 21
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)