BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013492
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/376 (68%), Positives = 267/376 (71%), Gaps = 39/376 (10%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADV
Sbjct: 1 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
KP G ISVDGK+IQVVSNRNP LPW +LGID+VIEGTGVFVDREGAGKHI+AGAKKV
Sbjct: 61 KPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKV 120
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
+ITAPGKGDIPTYVVGVNADAY DEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 IITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKF---------- 170
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
GIIKGTMTTTHSYTGDQ
Sbjct: 171 -----------------------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRAR 201
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NIVPTST NGIALRVPTPN SKKTFAEEVNA
Sbjct: 202 AAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNA 261
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
AFR+SA+ ELKGIL VCDEPLVSVDFRC MGDDMVKVIAWYDNEWGY
Sbjct: 262 AFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGY 321
Query: 427 SQRVVDLADIVANNWK 442
SQRVVDLADIVANNWK
Sbjct: 322 SQRVVDLADIVANNWK 337
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/375 (66%), Positives = 262/375 (69%), Gaps = 39/375 (10%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ
Sbjct: 170 ----------------------------GIIKGTMTTTHSYTGDQRLLDAAHRDLRRARA 201
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NIVPTST NGIALRVPTPN SKKTFAEEVNAA
Sbjct: 202 ACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 261
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
FRESADNELKGILSVCDEPLVS+DFRC MGDDMVKVIAWYDNEWGYS
Sbjct: 262 FRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 321
Query: 428 QRVVDLADIVANNWK 442
QRVVDLADIVAN W+
Sbjct: 322 QRVVDLADIVANKWQ 336
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/375 (66%), Positives = 262/375 (69%), Gaps = 39/375 (10%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ
Sbjct: 170 ----------------------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARA 201
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NIVPTST NGIALRVPTPN SKKTFAEEVNAA
Sbjct: 202 ACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 261
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
FRESADNELKGILSVCDEPLVS+DFRC MGDDMVKVIAWYDNEWGYS
Sbjct: 262 FRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 321
Query: 428 QRVVDLADIVANNWK 442
QRVVDLADIVAN W+
Sbjct: 322 QRVVDLADIVANKWQ 336
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/375 (66%), Positives = 262/375 (69%), Gaps = 39/375 (10%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ
Sbjct: 170 ----------------------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARA 201
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NIVPTST NGIALRVPTPN SKKTFAEEVNAA
Sbjct: 202 ACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 261
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
FRESADNELKGILSVCDEPLVS+DFRC MGDDMVKVIAWYDNEWGYS
Sbjct: 262 FRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 321
Query: 428 QRVVDLADIVANNWK 442
QRVVDLADIVAN W+
Sbjct: 322 QRVVDLADIVANKWQ 336
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/375 (66%), Positives = 261/375 (69%), Gaps = 39/375 (10%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV IND GGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ
Sbjct: 170 ----------------------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARA 201
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NIVPTST NGIALRVPTPN SKKTFAEEVNAA
Sbjct: 202 ACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 261
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
FRESADNELKGILSVCDEPLVS+DFRC MGDDMVKVIAWYDNEWGYS
Sbjct: 262 FRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 321
Query: 428 QRVVDLADIVANNWK 442
QRVVDLADIVAN W+
Sbjct: 322 QRVVDLADIVANKWQ 336
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/375 (66%), Positives = 259/375 (69%), Gaps = 41/375 (10%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHG KDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHG-KDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISV GKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 60 TAGDSAISV-GKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 119 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 167
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ
Sbjct: 168 ----------------------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARA 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NIVPTST NGIALRVPTPN SKKTFAEEVNAA
Sbjct: 200 ACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
FRESAD ELKGILSVCDEPLVS+DFRC MGDDMVKVIAWYDNEWGYS
Sbjct: 260 FRESADQELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 319
Query: 428 QRVVDLADIVANNWK 442
QRVVDLADIVAN W+
Sbjct: 320 QRVVDLADIVANKWQ 334
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/377 (57%), Positives = 241/377 (63%), Gaps = 42/377 (11%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ + S+DGK I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+
Sbjct: 61 IIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 120
Query: 188 ITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
ITAP KG DIPTYVVGVN Y D IISNASCTTNCLAPFVKVLD++
Sbjct: 121 ITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEEL--------- 171
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXX 305
GI+KGTMTTTHSYTGDQ
Sbjct: 172 ------------------------------GIVKGTMTTTHSYTGDQRLLDASHRDLRRA 201
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSK-KTFAEEV 364
NIVPTST NGIALRVPTPN K AE+V
Sbjct: 202 RAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDV 261
Query: 365 NAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEW 424
N AFR++A LKG+L VCD PLVSVDFRC MG DMVKV+AWYDNEW
Sbjct: 262 NNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEW 321
Query: 425 GYSQRVVDLADIVANNW 441
GYSQRVVDLAD+VAN W
Sbjct: 322 GYSQRVVDLADLVANKW 338
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 182/375 (48%), Positives = 217/375 (57%), Gaps = 42/375 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVLI
Sbjct: 62 YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 189 TAPGKGD-IPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
TAPGKG+ + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 122 TAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF---------- 171
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
GIIKGTMTTTHSYT DQ
Sbjct: 172 -----------------------------GIIKGTMTTTHSYTLDQRILDASHRDLRRAR 202
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NIVPT+T NGIALRVPTPN K T E+VN
Sbjct: 203 AAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNE 262
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
++++ +KGI+ D PLVS DFR M D+VKVIAWYDNEWGY
Sbjct: 263 VLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGY 322
Query: 427 SQRVVDLADIVANNW 441
SQRVVDLA++ A W
Sbjct: 323 SQRVVDLAELAARKW 337
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 180/372 (48%), Positives = 215/372 (57%), Gaps = 42/372 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVLI
Sbjct: 62 YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 189 TAPGKGD-IPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
TAPGK + + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 122 TAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF---------- 171
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
GIIKGTMTTTHSYT DQ
Sbjct: 172 -----------------------------GIIKGTMTTTHSYTLDQRILDASHRDLRRAR 202
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NIVPT+T NGIALRVPTPN K T E+VN
Sbjct: 203 AAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNE 262
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
++++ +KGI+ D PLVS DFR M D+VKVIAWYDNEWGY
Sbjct: 263 VLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGY 322
Query: 427 SQRVVDLADIVA 438
SQRVVDLA++ A
Sbjct: 323 SQRVVDLAELAA 334
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/372 (42%), Positives = 202/372 (54%), Gaps = 43/372 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+NDTGG +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ
Sbjct: 168 ----------------------------GIVRGMMTTVHSYTNDQRILDASHKDLRRARA 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
+I+PT+T NG+A+RVPTPN K+ EEVNAA
Sbjct: 200 AAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ ELKGIL+ +EPLVS D+ + MVKV++WYDNE GYS
Sbjct: 260 LKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYS 319
Query: 428 QRVVDLADIVAN 439
RVVDLA +A+
Sbjct: 320 HRVVDLAAYIAS 331
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 199/372 (53%), Gaps = 43/372 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ
Sbjct: 168 ----------------------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRARA 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
+I+PT+T NG+A+RVPTPN K+ EEVNAA
Sbjct: 200 AAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ ELKGIL+ +EPLVS D+ + MVKV++WYDNE GYS
Sbjct: 260 LKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYS 319
Query: 428 QRVVDLADIVAN 439
RVVDLA +A+
Sbjct: 320 HRVVDLAAYIAS 331
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 198/372 (53%), Gaps = 43/372 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+N +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ
Sbjct: 168 ----------------------------GIVRGMMTTVHSYTNDQRILDASHKDLRRARA 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
+I+PT+T NG+A+RVPTPN K+ EEVNAA
Sbjct: 200 AAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ ELKGIL+ +EPLVS D+ + MVKV++WYDNE GYS
Sbjct: 260 LKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYS 319
Query: 428 QRVVDLADIVAN 439
RVVDLA +A+
Sbjct: 320 HRVVDLAAYIAS 331
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 271 bits (692), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 198/372 (53%), Gaps = 43/372 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
+AP K + T V+GVN D Y P +ISNAS TTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQF----------- 167
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ
Sbjct: 168 ----------------------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRARA 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
+I+PT+T NG+A+RVPTPN K+ EEVNAA
Sbjct: 200 AAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ ELKGIL+ +EPLVS D+ + MVKV++WYDNE GYS
Sbjct: 260 LKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYS 319
Query: 428 QRVVDLADIVAN 439
RVVDLA +A+
Sbjct: 320 HRVVDLAAYIAS 331
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 270 bits (691), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 198/372 (53%), Gaps = 43/372 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
+AP K + T V+GVN D Y P +ISNAS TTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQF----------- 167
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ
Sbjct: 168 ----------------------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRARA 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
+I+PT+T NG+A+RVPTPN K+ EEVNAA
Sbjct: 200 AAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ ELKGIL+ +EPLVS D+ + MVKV++WYDNE GYS
Sbjct: 260 LKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYS 319
Query: 428 QRVVDLADIVAN 439
RVVDLA +A+
Sbjct: 320 HRVVDLAAYIAS 331
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 261 bits (666), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 191/368 (51%), Gaps = 40/368 (10%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R + RK+ +EVVAIND K +HLLKYDS F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + VDGK I+V + +P LPW DLG+D VIE TGVF +RE A H+QAGAKKV+IT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLS 249
AP KG+ T V+G N D KP+ IIS ASCTTN +AP VKVL +KF
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKF------------- 167
Query: 250 LCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXX 309
GI+ G +TT HSYT DQ
Sbjct: 168 --------------------------GIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAA 201
Query: 310 XNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFR 369
NI+PT+T +G+A+RVPTP+ K+T EEVNA +
Sbjct: 202 VNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMK 261
Query: 370 ESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQR 429
E+ + LKGI+ DEP+VS D +G +VKV +WYDNE+GYS R
Sbjct: 262 EATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNR 321
Query: 430 VVDLADIV 437
VVD +++
Sbjct: 322 VVDTLELL 329
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 195/379 (51%), Gaps = 52/379 (13%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR+F R GR++ +E+VAIND K +HLLKYDS GIF+ V+
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D I VDGK I+V + ++P +PWGDLG+D+VIE TGVF DRE A KH+Q GAKKV+I
Sbjct: 60 AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
TAP K T V+GVN + Y P E IISNASCTTNCLAP VKVL++ F
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAF----------- 168
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
G+ KG M T H+YT DQ
Sbjct: 169 ----------------------------GVEKGYMVTVHAYTNDQRLLDLPHKDFRRARA 200
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNA 366
NIVPT+T +G A RVP P+ +K + EEVN
Sbjct: 201 AAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNE 260
Query: 367 AFRESADN-------ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAW 419
FRE+A LK IL C++P+VS D + D++V + AW
Sbjct: 261 KFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQVI-DNLVHIAAW 319
Query: 420 YDNEWGYSQRVVDLADIVA 438
YDNEWGYS R+ DL +A
Sbjct: 320 YDNEWGYSCRLRDLVIYLA 338
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 191/366 (52%), Gaps = 43/366 (11%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEA 124
+ A +VAINGFGRIGR R K+S E+VAIN + + +HL+KYD+ G F+
Sbjct: 1 SNAMTRVAINGFGRIGRMVFR--QAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDG 58
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
V+ D + VDGK+I++++NR+P LPW DLG+++VIE TG F +E A H++AGAK
Sbjct: 59 TVEAF-EDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117
Query: 185 KVLITAPGKGDIPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHL 243
KV++TAPGK + T VVGVN D +ISNASCTTNCLAP VKVLD++F
Sbjct: 118 KVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQF------- 170
Query: 244 QKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX 303
GI G MTT H+YT DQ
Sbjct: 171 --------------------------------GIENGLMTTVHAYTNDQKNIDNPHKDLR 198
Query: 304 XXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEE 363
+I+PT+T +G+ALRVPTPN + E
Sbjct: 199 RARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEA 258
Query: 364 VNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNE 423
+N AF+ A+ LKGI+ +EPLVS+DF MGD VKV+AWYDNE
Sbjct: 259 INDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNE 318
Query: 424 WGYSQR 429
WGYS+R
Sbjct: 319 WGYSRR 324
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 189/368 (51%), Gaps = 44/368 (11%)
Query: 69 LKVAINGFGRIGRNFLRCW--HGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR GR D ++VVAIND G V+ +HLL+YDS G F +V
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTD--IQVVAINDLGPVETNAHLLRYDSVHGRFPKEV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ G D I V I+V + RNP LPW + +D+ +E TG+F R+ A H++AGAK+V
Sbjct: 61 EVAG-DTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
+++AP G T V GVN D D +ISNASCTTNCLAP +V
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQV--------------- 164
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
LND I GI KG MTT HSYTGDQ
Sbjct: 165 -------------------LNDTI-----GIEKGFMTTIHSYTGDQPTLDTMHKDLYRAR 200
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
+++PTST +G+A+RVPTPN ++T EEVN
Sbjct: 201 AAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNN 260
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A RE+A+ LKGIL DE LVS DF M MV++++WYDNEWG+
Sbjct: 261 AIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGF 320
Query: 427 SQRVVDLA 434
S R+ D A
Sbjct: 321 SSRMSDTA 328
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 193/373 (51%), Gaps = 43/373 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR ++ K LE+VAIND G K +HL +YD+ G F +V
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAINDLGDAKTNAHLTQYDTAHGKFPGEVS 70
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V D + V+G I+V++NRNP LPWG+LG+D+V+E TG F +E A H++ GAKKV+
Sbjct: 71 -VDGDYLVVNGDRIRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKKVI 129
Query: 188 ITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
I+APG D+ T V GVN D K + +ISNASCTTNCLAP VK
Sbjct: 130 ISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVK---------------- 173
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
LND+I G+ G MTT H+YT DQ
Sbjct: 174 ------------------PLNDKI-----GLETGLMTTIHAYTNDQVLTDVYHEDLRRAR 210
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
+ +PT T +G A+RVPT N + T A EVNA
Sbjct: 211 SATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVPTINVSIVDLSFIAKRDTTAAEVNA 270
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
+E+++ LKGIL + PLVS+DF G +VKV +WYDNEWG+
Sbjct: 271 IMKEASEGALKGILGYNEAPLVSIDFNHNPASSTFDATLTKVSG-RLVKVSSWYDNEWGF 329
Query: 427 SQRVVDLADIVAN 439
S R++D A +AN
Sbjct: 330 SNRMLDTAIALAN 342
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 182/368 (49%), Gaps = 44/368 (11%)
Query: 69 LKVAINGFGRIGRNFLRCW--HGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR GR+D +EVVA+ND G V+ +HLL+YDS G F V
Sbjct: 24 VRVAINGFGRIGRNILRAIIESGRQD--IEVVALNDLGSVETNAHLLRYDSVHGCFPGTV 81
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ VG D I + +I+V + R+P LPW L ID+ +E TG+F R+ A H+ AGAK+V
Sbjct: 82 QVVG-DAIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRV 140
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
L++AP +G T V GVN + +ISNASCTTNCLAP +VL
Sbjct: 141 LVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNT----------- 189
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
GI KG MTT HSYTGDQ
Sbjct: 190 ----------------------------VGIEKGFMTTIHSYTGDQPVLDTMHRDLYRAR 221
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
+++PTST +G+++RVPTPN + T EE+N
Sbjct: 222 AAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINT 281
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A R +A LKGIL DE LVS DF + + +V+ WYDNEWG+
Sbjct: 282 AIRTAAQGSLKGILDYTDEKLVSCDFNHNPHSAIFHNDQTKVIDGQLCRVLVWYDNEWGF 341
Query: 427 SQRVVDLA 434
S R+ D A
Sbjct: 342 SNRMCDTA 349
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 188/374 (50%), Gaps = 52/374 (13%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+K+AINGFGRIGRN + R +++VAIND K +HLLKYDST G++ V+
Sbjct: 22 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE- 77
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFV----DREGAGKHI-QAG 182
DG I VDG+ I++++ R+P NLPW LGID+VIE TGVF D+ G H+ AG
Sbjct: 78 -SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136
Query: 183 AKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKH 242
AKKV++T P K +I T V+GVN D +SNASCTTNCLAP KVL + F
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESF------ 190
Query: 243 LQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX 302
GI +G MTT H+YT DQ
Sbjct: 191 ---------------------------------GIEQGLMTTVHAYTNDQRILDLPHSDL 217
Query: 303 XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA- 361
+I+PTST NG ++RVP P KK
Sbjct: 218 RRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTK 277
Query: 362 EEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWY 420
EE+N+ R++++ ELKGIL ++P+VS D + + + K+++WY
Sbjct: 278 EEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWY 337
Query: 421 DNEWGYSQRVVDLA 434
DNE+GYS RVVDLA
Sbjct: 338 DNEFGYSTRVVDLA 351
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 183/366 (50%), Gaps = 43/366 (11%)
Query: 69 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR + G K +E+VAIND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G+ + V+G I+V +NRNP LPWG L +D+V+E TG F +E AG HI+ GAKKV+
Sbjct: 62 VNGSYMV-VNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 188 ITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
I+APG D+ T V GVN K + +ISNAS TTNCLAP VK L+ K G
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLG--------- 171
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXX 306
L D G MTT H+YT +Q
Sbjct: 172 -------------------LQD-----------GLMTTVHAYTNNQVLTDVYHEDLRRAR 201
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
+++PT T NG A+RVPT N + T EEVN
Sbjct: 202 SATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNG 261
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
+ +++ ELKGIL EPLVSVD+ G +VKV +WYDNEWG+
Sbjct: 262 ILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTKVSG-RLVKVSSWYDNEWGF 320
Query: 427 SQRVVD 432
S R++D
Sbjct: 321 SNRMLD 326
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 183/370 (49%), Gaps = 45/370 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEV-A 56
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
TAP KG+ T V+GVN +AY P IISNASCTTN LAP +KVL++ F
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAF----------- 165
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
G+ K MTT HSYT DQ
Sbjct: 166 ----------------------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRARA 197
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+PT+T +G+ALRVPT ++ AEEVNAA
Sbjct: 198 AAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAA 257
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ LKGIL+ ++ +V D +G +MVKV AWYDNEWGY+
Sbjct: 258 LKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYA 316
Query: 428 QRVVDLADIV 437
RV DL ++V
Sbjct: 317 NRVADLVELV 326
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 185/372 (49%), Gaps = 49/372 (13%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDST G F
Sbjct: 1 MKVGINGFGRIGRQVFRILHERG---VEVALINDLTDNKTLAHLLKYDSTYGRFPG---A 54
Query: 129 VGTD--GISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
VG D + VDGK I+ + ++P +PW G+ +V+E TGVF D E A H++AGAKKV
Sbjct: 55 VGYDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKV 114
Query: 187 LITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
+ITAP K + T V+GVN + Y P I+SNASCTTN LAP +KVL++ F
Sbjct: 115 IITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAF--------- 165
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXX 305
G+ K MTT HSYT DQ
Sbjct: 166 ------------------------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRA 195
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
NI+PT+T +G+ALRVPTP ++ AEEVN
Sbjct: 196 RAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGSISDITALLKREVTAEEVN 255
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
AA + +A+ LKGIL+ ++ +V D +G ++VKV AWYDNEWG
Sbjct: 256 AALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKLTKAIG-NLVKVFAWYDNEWG 314
Query: 426 YSQRVVDLADIV 437
Y+ RV DL ++V
Sbjct: 315 YANRVADLVELV 326
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 182/370 (49%), Gaps = 45/370 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
TAP KG+ T V+GVN +AY P IISNAS TTN LAP +KVL++ F
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAF----------- 165
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXX 307
G+ K MTT HSYT DQ
Sbjct: 166 ----------------------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRARA 197
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+PT+T +G+ALRVPT ++ AEEVNAA
Sbjct: 198 AAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAA 257
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ LKGIL+ ++ +V D +G +MVKV AWYDNEWGY+
Sbjct: 258 LKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYA 316
Query: 428 QRVVDLADIV 437
RV DL ++V
Sbjct: 317 NRVADLVELV 326
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 182/366 (49%), Gaps = 44/366 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 120 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 166
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXX 307
GII+G MTT H+ T Q
Sbjct: 167 ---------------------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRG 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+P+ST G+A RVPTPN K E++ AA
Sbjct: 200 ASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ E+KG+L ++ +VS DF + D+ VK+++WYDNE GYS
Sbjct: 260 VKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319
Query: 428 QRVVDL 433
+V+DL
Sbjct: 320 NKVLDL 325
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 182/366 (49%), Gaps = 44/366 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXX 307
GII+G MTT H+ T Q
Sbjct: 166 ---------------------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRG 198
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+P+ST G+A RVPTPN K E++ AA
Sbjct: 199 ASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAA 258
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ E+KG+L ++ +VS DF + D+ VK+++WYDNE GYS
Sbjct: 259 VKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 318
Query: 428 QRVVDL 433
+V+DL
Sbjct: 319 NKVLDL 324
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 181/366 (49%), Gaps = 44/366 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXX 307
GII+G MTT H+ T Q
Sbjct: 166 ---------------------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRG 198
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+P+ST G+A RVPTPN K E++ AA
Sbjct: 199 ASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAA 258
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ E+KG+L ++ +VS DF + D+ VK+++WYD E GYS
Sbjct: 259 VKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYS 318
Query: 428 QRVVDL 433
+V+DL
Sbjct: 319 NKVLDL 324
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 182/366 (49%), Gaps = 44/366 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
T P K + P +V G N D Y + I+SNAS TTNCLAP KV++ F
Sbjct: 120 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASXTTNCLAPLAKVINDNF------------ 166
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXX 307
GII+G MTT H+ T Q
Sbjct: 167 ---------------------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRG 199
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+P+ST G+A RVPTPN K E++ AA
Sbjct: 200 ASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAA 259
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ E+KG+L ++ +VS DF + D+ VK+++WYDNE GYS
Sbjct: 260 VKAAAEGEMKGVLGYTEDDVVSTDFNGEVXTSVFDAKAGIALNDNFVKLVSWYDNETGYS 319
Query: 428 QRVVDL 433
+V+DL
Sbjct: 320 NKVLDL 325
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 189/388 (48%), Gaps = 49/388 (12%)
Query: 57 SSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKY 115
SSG + Q L INGFGRIGR LR R D + VVAIND V+ ++LLKY
Sbjct: 8 SSGRENLYFQGTL--GINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKY 63
Query: 116 DSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
DS G F V+ G D + ++GKV++V ++P +PWG G +V E TGVF E A
Sbjct: 64 DSVHGNFNGTVEVSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA 122
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQ 234
H++ GAKKV+I+AP K ++P YV+GVN Y P + +ISNASCTTNCLAP K+++
Sbjct: 123 SLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIIND 182
Query: 235 KFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXX 294
KF GI++G MTT HS T +Q
Sbjct: 183 KF---------------------------------------GIVEGLMTTVHSLTANQLT 203
Query: 295 XXXXXXXXX---XXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXX 351
NI+P ST G+A+RVPTP+
Sbjct: 204 VDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDL 263
Query: 352 XXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGD 411
+K EE+ A +E+++ +KGI+ + +VS DF + D
Sbjct: 264 TCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALND 323
Query: 412 DMVKVIAWYDNEWGYSQRVVDLADIVAN 439
VK+I+WYDNE GYS R+VDLA VA+
Sbjct: 324 SFVKLISWYDNESGYSNRLVDLAVYVAS 351
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 184/374 (49%), Gaps = 47/374 (12%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPV 129
+ INGFGRIGR LR R D + VVAIND V+ ++LLKYDS G F V+
Sbjct: 25 LGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVS 82
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
G D + ++GKV++V ++P +PWG G +V E TGVF E A H++ GAKKV+I+
Sbjct: 83 GKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 190 APGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
AP K ++P YV+GVN Y P + +ISNASCTTNCLAP K+++ KF
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKF------------ 189
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XX 305
GI++G MTT HS T +Q
Sbjct: 190 ---------------------------GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAG 222
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
NI+P ST G+A+RVPTP+ +K EE+
Sbjct: 223 RCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIY 282
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
A +E+++ +KGI+ + +VS DF + D VK+I+WYDNE G
Sbjct: 283 QAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESG 342
Query: 426 YSQRVVDLADIVAN 439
YS R+VDLA VA+
Sbjct: 343 YSNRLVDLAVYVAS 356
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 180/380 (47%), Gaps = 48/380 (12%)
Query: 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEA 124
A K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F
Sbjct: 1 MAVTKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPC 58
Query: 125 DVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183
+V DG + G K + V + ++P +PWG +D+V E TGVF+ +E A H++ GA
Sbjct: 59 EV--THADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGA 116
Query: 184 KKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHL 243
KKV+++AP K D P YV+G+N Y + I+SNASCTTNCLAP KV++ +F
Sbjct: 117 KKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRF------- 169
Query: 244 QKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX 303
GI++G MTT H+ T +Q
Sbjct: 170 --------------------------------GIVEGLMTTVHASTANQLVVDGPSKGGK 197
Query: 304 ---XXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF 360
NI+P ST G+A RVP K
Sbjct: 198 DWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAK 257
Query: 361 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWY 420
EEV +++A+ LKGIL ++ +VS DF + D+ K+++WY
Sbjct: 258 YEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWY 317
Query: 421 DNEWGYSQRVVDLADIVANN 440
DNEWGYS RV+DLA + NN
Sbjct: 318 DNEWGYSNRVLDLAVHITNN 337
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 183/374 (48%), Gaps = 47/374 (12%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPV 129
+ INGFGRIGR LR R D + VVAIND V+ ++LLKYDS G F V+
Sbjct: 25 LGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVS 82
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
G D + ++GKV++V ++P +PWG G +V E TGVF E A H++ GAKKV+I+
Sbjct: 83 GKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 190 APGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
AP K ++P YV+GVN Y P + +ISNAS TTNCLAP K+++ KF
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKF------------ 189
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XX 305
GI++G MTT HS T +Q
Sbjct: 190 ---------------------------GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAG 222
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
NI+P ST G+A+RVPTP+ +K EE+
Sbjct: 223 RCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIY 282
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
A +E+++ +KGI+ + +VS DF + D VK+I+WYDNE G
Sbjct: 283 QAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKNACIALNDSFVKLISWYDNESG 342
Query: 426 YSQRVVDLADIVAN 439
YS R+VDLA VA+
Sbjct: 343 YSNRLVDLAVYVAS 356
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 187/372 (50%), Gaps = 46/372 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 127
+ +AINGFGRIGR LR RK+ ++VVAIND V A+++ KYDST G ++ +V
Sbjct: 15 VSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVS 72
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G++ I ++GK + V ++P LPWG LG+D+ ++ TGVF + + A KHI AGAKKV+
Sbjct: 73 HDGSNLI-INGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVV 131
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAP K P +VVGVN D Y E I+SNASCTTNCLAP K+++ +F
Sbjct: 132 ITAPSK-TAPMFVVGVNEDKYN-GEKIVSNASCTTNCLAPIAKIINDEF----------- 178
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
GI +G MTT HS T Q
Sbjct: 179 ----------------------------GIEEGLMTTVHSITATQKTVDGPSHKDWRGGR 210
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPT + K +E+ A
Sbjct: 211 TASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKA 270
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A ++ ++ +LK ++ ++ +VS DF + VK++AWYDNE+GY
Sbjct: 271 AVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGY 330
Query: 427 SQRVVDLADIVA 438
S RVVDL + VA
Sbjct: 331 STRVVDLVEHVA 342
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 176/370 (47%), Gaps = 48/370 (12%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F +V
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEV-- 68
Query: 129 VGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + G K + V + ++P +PWG +D+V E TGVF+ +E A H++ GAKKV+
Sbjct: 69 THADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI 128
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
++AP K D P YV+G+N Y + I+SNASCTTNCLAP KV++ +F
Sbjct: 129 MSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRF----------- 177
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---X 304
GI++G MTT H+ T +Q
Sbjct: 178 ----------------------------GIVEGLMTTVHASTANQLVVDGPSKGGKDWRA 209
Query: 305 XXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEV 364
NI+P ST G+A RVP K EEV
Sbjct: 210 GRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEV 269
Query: 365 NAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEW 424
+++A+ LKGIL ++ +VS DF + D+ K+++WYDNEW
Sbjct: 270 ALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEW 329
Query: 425 GYSQRVVDLA 434
GYS RV+DLA
Sbjct: 330 GYSNRVLDLA 339
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 180/372 (48%), Gaps = 45/372 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGR +R R + +EVVA+ND A+++ KYDST G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
I VDGK I R+P NLPWG +D+ I+ TGVF + + A KHI AGAKKV+
Sbjct: 60 H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAP P +V+GVN + Y D I+SNASCTTNCLAP KV++ F
Sbjct: 119 ITAPS-STAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAF----------- 166
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
GI +G MTT HS T Q
Sbjct: 167 ----------------------------GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGR 198
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPT + +K+T +E+
Sbjct: 199 TASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKK 258
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
+ +A+ +LKG+L ++ +VS DF + VK+++WYDNE+GY
Sbjct: 259 VVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGY 318
Query: 427 SQRVVDLADIVA 438
S RVVDL + VA
Sbjct: 319 STRVVDLVEHVA 330
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 180/372 (48%), Gaps = 45/372 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGR +R R + +EVVA+ND A+++ KYDST G + +V
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 67
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
I VDGK I R+P NLPWG +D+ I+ TGVF + + A KHI AGAKKV+
Sbjct: 68 H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 126
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
ITAP P +V+GVN + Y D I+SNASCTTNCLAP KV++ F
Sbjct: 127 ITAP-SSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAF----------- 174
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
GI +G MTT HS T Q
Sbjct: 175 ----------------------------GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGR 206
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPT + +K+T +E+
Sbjct: 207 TASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKK 266
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
+ +A+ +LKG+L ++ +VS DF + VK+++WYDNE+GY
Sbjct: 267 VVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGY 326
Query: 427 SQRVVDLADIVA 438
S RVVDL + VA
Sbjct: 327 STRVVDLVEHVA 338
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 177/369 (47%), Gaps = 45/369 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE-AD 125
K+K+ INGFGRIGR R +D +E+VA+ND +++ KYD+ G ++ +D
Sbjct: 3 KIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
+K + + + K + V RNP +PW + G + V+E TGVF D+E A H++ GAKK
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
V+I+AP K D P +V GVN D Y D I+SNASCTTNCLAP KV+ F
Sbjct: 121 VVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNF--------- 170
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XX 304
GII+G MTT H+ T Q
Sbjct: 171 ------------------------------GIIEGLMTTVHAITATQKTVDGPSSKDWRG 200
Query: 305 XXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEV 364
NI+P+ST G++ RVPT + K + +
Sbjct: 201 GRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAI 260
Query: 365 NAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEW 424
+A + +++ +LKGI+ +E LVS DF + D+ VK++AWYDNEW
Sbjct: 261 KSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEW 320
Query: 425 GYSQRVVDL 433
GYS RV+DL
Sbjct: 321 GYSNRVIDL 329
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 177/369 (47%), Gaps = 45/369 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE-AD 125
K+K+ INGFGRIGR R +D +E+VA+ND +++ KYD+ G ++ +D
Sbjct: 2 KIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 59
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
+K + + + K + V RNP +PW + G + V+E TGVF D+E A H++ GAKK
Sbjct: 60 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 119
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
V+I+AP K D P +V GVN D Y D I+SNASCTTNCLAP KV+ F
Sbjct: 120 VVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNF--------- 169
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XX 304
GII+G MTT H+ T Q
Sbjct: 170 ------------------------------GIIEGLMTTVHAITATQKTVDGPSSKDWRG 199
Query: 305 XXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEV 364
NI+P+ST G++ RVPT + K + +
Sbjct: 200 GRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAI 259
Query: 365 NAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEW 424
+A + +++ +LKGI+ +E LVS DF + D+ VK++AWYDNEW
Sbjct: 260 KSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEW 319
Query: 425 GYSQRVVDL 433
GYS RV+DL
Sbjct: 320 GYSNRVIDL 328
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 175/367 (47%), Gaps = 48/367 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 58 -AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
I+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 117 ISAP-SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENF----------- 164
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
I++G MTT H+ T Q
Sbjct: 165 ----------------------------EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGR 196
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPTPN K+ +++ A
Sbjct: 197 GAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKA 256
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A + +++ L+G+L ++ +VS DF + VKV++WYDNE+GY
Sbjct: 257 AMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGY 316
Query: 427 SQRVVDL 433
SQRV+DL
Sbjct: 317 SQRVIDL 323
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 174/366 (47%), Gaps = 46/366 (12%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRT---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+I
Sbjct: 58 VEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 118 SAP-SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENF------------ 164
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXX 307
I++G MTT H+ T Q
Sbjct: 165 ---------------------------EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRG 197
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+P+ST G+A RVPTPN K+ +++ AA
Sbjct: 198 AAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAA 257
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +++ L+G+L ++ +VS DF + VKV++WYDNE+GYS
Sbjct: 258 MKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYS 317
Query: 428 QRVVDL 433
QRV+DL
Sbjct: 318 QRVIDL 323
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 177/366 (48%), Gaps = 44/366 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND ++ LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYXAYXLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV+
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV+
Sbjct: 119 TGPSKDNTPXFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVI---------------- 161
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXX 307
ND GII+G TT H+ T Q
Sbjct: 162 ------------------NDNF-----GIIEGLXTTVHATTATQKTVDGPSHKDWRGGRG 198
Query: 308 XXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAA 367
NI+P+ST G A RVPTPN K E++ AA
Sbjct: 199 ASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNVSVVDLTVRLEKAATYEQIKAA 258
Query: 368 FRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYS 427
+ +A+ E KG+L ++ +VS DF + D+ VK+++WYDNE GYS
Sbjct: 259 VKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYS 318
Query: 428 QRVVDL 433
+V+DL
Sbjct: 319 NKVLDL 324
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 174/367 (47%), Gaps = 48/367 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 58 -AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
I+AP D P +V GVN + Y D ++SNAS TTNCLAP KVL + F
Sbjct: 117 ISAP-SADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENF----------- 164
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
I++G MTT H+ T Q
Sbjct: 165 ----------------------------EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGR 196
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPTPN K+ +++ A
Sbjct: 197 GAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKA 256
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A + +++ L+G+L ++ +VS DF + VKV++WYDNE+GY
Sbjct: 257 AMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGY 316
Query: 427 SQRVVDL 433
SQRV+DL
Sbjct: 317 SQRVIDL 323
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 183/388 (47%), Gaps = 55/388 (14%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+ +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 126 VKPVGT-------DGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V + D + V+G +++ V + RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T V+GVN Y P E ++SNASCTTNCLAP V VL ++
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE- 181
Query: 237 GKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXX 296
G+ G MTT HSYT Q
Sbjct: 182 -------------------------------------GFGVQTGLMTTIHSYTATQKTVD 204
Query: 297 XXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXX 355
NI+P++T G++ RVPTP+
Sbjct: 205 GVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTA 264
Query: 356 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGD 411
++ T +E++AA + ++ +KGIL DE LVS DF R
Sbjct: 265 ARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKER 324
Query: 412 DMVKVIAWYDNEWGYSQRVVDLADIVAN 439
K+++WYDNEWGYS RVVDL +A+
Sbjct: 325 RFFKIVSWYDNEWGYSHRVVDLVRHMAS 352
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 172/367 (46%), Gaps = 44/367 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + GR+ + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 61 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 119
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 120 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAY--------- 170
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXX 305
GI GT+TT HS DQ
Sbjct: 171 ------------------------------GIESGTVTTIHSAMHDQQVIDAYHPDLRRT 200
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
+I+P T IA+RVPT N K A EVN
Sbjct: 201 RAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVN 260
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
+++A GI+ + PLVSVDF G ++K + W DNEWG
Sbjct: 261 LLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWG 320
Query: 426 YSQRVVD 432
++ R++D
Sbjct: 321 FANRMLD 327
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 181/375 (48%), Gaps = 49/375 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R R D +EV+AIND + +LL+YDS G + +V
Sbjct: 25 KLGINGFGRIGRLVFRAAMERGD--VEVLAINDPFMSLDYMVYLLRYDSVHGHYPGEVSH 82
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + V GK + V + + P +PWG G+ + E TG+F+ +E A H+ GAKKV+
Sbjct: 83 --KDGKLIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVI 140
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
++AP K D P +V+GVN D YK + I+SNASCTTNCLAP K++ KF
Sbjct: 141 MSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKF----------- 189
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---X 304
GI++G MTT H+ T +Q
Sbjct: 190 ----------------------------GIVEGLMTTVHAMTANQLTVDGPSKGGKDWRA 221
Query: 305 XXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEV 364
NI+P ST G+A RVP P+ +K E++
Sbjct: 222 GRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEDI 281
Query: 365 NAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNE 423
AA +E+A + +KGI+S DE +VS DF + D VK+++WYDNE
Sbjct: 282 VAAVKEAATSGPMKGIISYTDEEVVSSDFVHCKFSSVFDINAGIMLNDTFVKLVSWYDNE 341
Query: 424 WGYSQRVVDLADIVA 438
WGYS R+V+LA ++
Sbjct: 342 WGYSNRLVELAHYMS 356
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 172/367 (46%), Gaps = 44/367 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + GR+ + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 62 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAY--------- 171
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXX 305
GI GT+TT HS DQ
Sbjct: 172 ------------------------------GIESGTVTTIHSAMHDQQVIDAYHPDLRRT 201
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
+I+P T IA+RVPT N K A EVN
Sbjct: 202 RAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVN 261
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
+++A GI+ + PLVSVDF G ++K + W DNEWG
Sbjct: 262 LLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWG 321
Query: 426 YSQRVVD 432
++ R++D
Sbjct: 322 FANRMLD 328
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 182/389 (46%), Gaps = 55/389 (14%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +K+D+ G +
Sbjct: 1 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ V + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 61 YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQ 234
HI+ GAKKV+I+AP G T V+GVN Y P ++SNASCTTNCLAP V VL +
Sbjct: 121 EGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTK 180
Query: 235 KFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXX 294
+ GI G MTT HSYT Q
Sbjct: 181 E--------------------------------------NFGIETGLMTTIHSYTATQKT 202
Query: 295 XXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXX 353
NI+P++T G++ RVPTP+
Sbjct: 203 VDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTF 262
Query: 354 XXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXM 409
++ T +E++ A +++A +KGIL DE LVS DF R
Sbjct: 263 RATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQNNLPG 322
Query: 410 GDDMVKVIAWYDNEWGYSQRVVDLADIVA 438
KV++WYDNEW YS RVVDL +A
Sbjct: 323 EKRFFKVVSWYDNEWAYSHRVVDLVRYMA 351
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 173/367 (47%), Gaps = 48/367 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 3 KIGINGFGRIGRLVLRA---ALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 59
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 60 --EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVV 117
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
I+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 118 ISAP-SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENF----------- 165
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
I++G MTT H+ T Q
Sbjct: 166 ----------------------------EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGR 197
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPTP+ K+ +++ A
Sbjct: 198 GAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKA 257
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A + +++ L+G L ++ +VS DF + VKV++WYDNE+GY
Sbjct: 258 AMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGY 317
Query: 427 SQRVVDL 433
SQRV+DL
Sbjct: 318 SQRVIDL 324
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 173/367 (47%), Gaps = 48/367 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 58
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 59 --EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVV 116
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
I+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 117 ISAP-SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENF----------- 164
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
I++G MTT H+ T Q
Sbjct: 165 ----------------------------EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGR 196
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P+ST G+A RVPTP+ K+ +++ A
Sbjct: 197 GAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKA 256
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
A + +++ L+G L ++ +VS DF + VKV++WYDNE+GY
Sbjct: 257 AMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGY 316
Query: 427 SQRVVDL 433
SQRV+DL
Sbjct: 317 SQRVIDL 323
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 182/389 (46%), Gaps = 55/389 (14%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +K+D+ G +
Sbjct: 1 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ V + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 61 YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQ 234
HI+ GAKKV+I+AP G T V+GVN Y P ++SNASCTTNCLAP V VL +
Sbjct: 121 EGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTK 180
Query: 235 KFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXX 294
+ GI G MTT HSYT Q
Sbjct: 181 E--------------------------------------NFGIETGLMTTIHSYTATQKT 202
Query: 295 XXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXX 353
NI+P++T G++ RVPTP+
Sbjct: 203 VDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTF 262
Query: 354 XXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXM 409
++ T +E++ A +++A +KGIL DE LVS DF R
Sbjct: 263 RATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQNNLPG 322
Query: 410 GDDMVKVIAWYDNEWGYSQRVVDLADIVA 438
KV++WYDNEW YS RVVDL +A
Sbjct: 323 EKRFFKVVSWYDNEWAYSHRVVDLVRYMA 351
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 169/367 (46%), Gaps = 45/367 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 127
+KV +NGFGRIGR R ++VVAIND + ++ +YDST G F VK
Sbjct: 1 VKVGVNGFGRIGRLVTRA--AFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 58
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ ++GK I + R+P N+ WGD G + V+E TGVF E AG H++ GAK+V+
Sbjct: 59 -AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 117
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSS 247
I+AP D P +V+GVN + Y I+SNAS TTNCLAP KV+ F
Sbjct: 118 ISAP-SADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHF----------- 165
Query: 248 LSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXX 306
GI++G MTT H+ T Q
Sbjct: 166 ----------------------------GIVEGLMTTVHAITATQKTVDGPSGKLWRDGR 197
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNA 366
NI+P ST G+A RVPTPN K +++
Sbjct: 198 GAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKK 257
Query: 367 AFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGY 426
+++++ LKGIL ++ +VS DF + D VK+I+WYDNE+GY
Sbjct: 258 VVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGY 317
Query: 427 SQRVVDL 433
S RVVDL
Sbjct: 318 SNRVVDL 324
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 180/382 (47%), Gaps = 55/382 (14%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ +KYDS G F+
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 126 V-----KP--VGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V KP D + V+G +++ V + RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T+V+GVN + Y P E ++SNASCTTNCLAP V VL ++
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKE- 181
Query: 237 GKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXX 296
GI G MTT HSYT Q
Sbjct: 182 -------------------------------------GFGISTGLMTTVHSYTATQKTVD 204
Query: 297 XXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXX 355
NI+P++T G+A RVPT +
Sbjct: 205 GVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIA 264
Query: 356 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGD 411
++ T +E++AA + ++ +K IL DE LVS DF R
Sbjct: 265 TRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNER 324
Query: 412 DMVKVIAWYDNEWGYSQRVVDL 433
K+++WYDNEWGYS RVVDL
Sbjct: 325 RFFKIVSWYDNEWGYSHRVVDL 346
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 194 bits (494), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 171/369 (46%), Gaps = 47/369 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADV 126
K+KV ++GFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 2 KVKVGVDGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 59
Query: 127 KPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
K DG + +DGK I + R+P N+ WGD G V+E TGVF E AG H++ GAK+
Sbjct: 60 K--AEDGKLVIDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKR 117
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
++I+AP D P +V+GVN Y IISNASCTTNCLAP KV+ F
Sbjct: 118 IVISAP-SADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHF--------- 167
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XX 304
GI++G MTT H+ T Q
Sbjct: 168 ------------------------------GIVEGLMTTVHAITATQKTVDSPSGKLWRG 197
Query: 305 XXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEV 364
N++P ST G+A RVPT N K +++
Sbjct: 198 GRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDI 257
Query: 365 NAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEW 424
+E+++ LKGIL ++ +VS DF + D VK+++WYDNE+
Sbjct: 258 KKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEF 317
Query: 425 GYSQRVVDL 433
GYS+RVVDL
Sbjct: 318 GYSERVVDL 326
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/368 (33%), Positives = 167/368 (45%), Gaps = 45/368 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADV 126
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 6 KVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 63
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
K + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+V
Sbjct: 64 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 122
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
+I+AP D P +V+GVN + Y IISNASCTTNCLAP KV+ F
Sbjct: 123 IISAP-SADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNF---------- 171
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXX 305
GI++G MTT H+ T Q
Sbjct: 172 -----------------------------GIVEGLMTTVHAITATQKTVDGPSGKLWRDG 202
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
NI+P ST G+A RVPT N K +++
Sbjct: 203 RGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIK 262
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
+++++ LKGIL + +VS DF + D VK+I+WYDNE+G
Sbjct: 263 KVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFG 322
Query: 426 YSQRVVDL 433
YS RVVDL
Sbjct: 323 YSNRVVDL 330
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/368 (33%), Positives = 167/368 (45%), Gaps = 45/368 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADV 126
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 3 KVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
K + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+V
Sbjct: 61 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 119
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
+I+AP D P +V+GVN + Y IISNASCTTNCLAP KV+ F
Sbjct: 120 IISAP-SADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNF---------- 168
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXX 305
GI++G MTT H+ T Q
Sbjct: 169 -----------------------------GIVEGLMTTVHAITATQKTVDGPSGKLWRDG 199
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
NI+P ST G+A RVPT N K +++
Sbjct: 200 RGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIK 259
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
+++++ LKGIL + +VS DF + D VK+I+WYDNE+G
Sbjct: 260 KVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFG 319
Query: 426 YSQRVVDL 433
YS RVVDL
Sbjct: 320 YSNRVVDL 327
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 182/388 (46%), Gaps = 55/388 (14%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+ +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 126 VKPVGT-------DGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V + D + V+G +++ V + RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T V+GVN Y P E ++SNAS TTNCLAP V VL ++
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKE- 181
Query: 237 GKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXX 296
G+ G MTT HSYT Q
Sbjct: 182 -------------------------------------GFGVQTGLMTTIHSYTATQKTVD 204
Query: 297 XXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXX 355
NI+P++T G++ RVPTP+
Sbjct: 205 GVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTA 264
Query: 356 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGD 411
++ T +E++AA + ++ +KGIL DE LVS DF R
Sbjct: 265 ARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKER 324
Query: 412 DMVKVIAWYDNEWGYSQRVVDLADIVAN 439
K+++WYDNEWGYS RVVDL +A+
Sbjct: 325 RFFKIVSWYDNEWGYSHRVVDLVRHMAS 352
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 170/367 (46%), Gaps = 44/367 (11%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + GR+ + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 62 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQK 245
L + PG D+ T V GVN D + + I+SNAS TTN + P +K+LD +
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAY--------- 171
Query: 246 SSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXX 305
GI GT+TT HS DQ
Sbjct: 172 ------------------------------GIESGTVTTIHSAMHDQQVIDAYHPDLRRT 201
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
+I+P T IA+RVPT N K A EVN
Sbjct: 202 RAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVN 261
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
+++A GI+ + PLVSVDF G ++K + W DNEWG
Sbjct: 262 LLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWG 321
Query: 426 YSQRVVD 432
++ R++D
Sbjct: 322 FANRMLD 328
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 173/374 (46%), Gaps = 47/374 (12%)
Query: 63 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGI 121
V+ +L V INGFGRIGR LR + ++VVA+ND + ++ KYDST G
Sbjct: 2 VSVARELTVGINGFGRIGRLVLRAC---MEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGR 58
Query: 122 FEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA 181
++ V+ + VD I V + P +PW +G V+E TGV++ + A HI A
Sbjct: 59 YKGSVE-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISA 117
Query: 182 GAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGKYQ 240
GA++V+I+AP D P +V+GVN + Y P I+SNASCTTNCLAP KV+ ++F
Sbjct: 118 GAQRVVISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERF---- 172
Query: 241 KHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXX 300
GI++G MTT HSYT Q
Sbjct: 173 -----------------------------------GIVEGLMTTVHSYTATQKTVDGPSR 197
Query: 301 XX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKT 359
NI+P ST G+A RVPTP+ ++
Sbjct: 198 KAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPA 257
Query: 360 FAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAW 419
+ A + +A + GIL+ ++ +VS DF + D+ VK+I+W
Sbjct: 258 PYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISW 317
Query: 420 YDNEWGYSQRVVDL 433
YDNE+GYS RVVDL
Sbjct: 318 YDNEYGYSHRVVDL 331
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 168/368 (45%), Gaps = 47/368 (12%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 127
+KV INGFGRIGR LR + + VVA+ND + ++ KYDST G ++ V+
Sbjct: 2 VKVGINGFGRIGRLVLRVC---MEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVE 58
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ VD I V + P +PW +G V+E TGV++ E A HI +GA++V+
Sbjct: 59 H-KNGRLVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVI 117
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKS 246
+TAP D P V+GVN Y P ++SNAS TTNCLAP KV+ ++F
Sbjct: 118 VTAPSP-DAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERF---------- 166
Query: 247 SLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXX 305
GI++G MTT H+YT Q
Sbjct: 167 -----------------------------GIVEGLMTTVHAYTATQKTVDGPSKKDWRGG 197
Query: 306 XXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVN 365
NI+P+ST G+A RVPTPN ++ +
Sbjct: 198 RGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIK 257
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 425
A + +A + GIL+ ++ +VS DF + D+ VK+++WYDNE+G
Sbjct: 258 EAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYG 317
Query: 426 YSQRVVDL 433
YS RVVDL
Sbjct: 318 YSHRVVDL 325
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 167/369 (45%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 167
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT H+YTGDQ
Sbjct: 168 ---------------------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRAR 200
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 201 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 260
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 261 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 316
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 317 EMSYTAQLV 325
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 167/369 (45%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 11 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 68
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 69 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 127
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 128 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 175
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT H+YTGDQ
Sbjct: 176 ---------------------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRAR 208
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 209 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 268
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 269 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 324
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 325 EMSYTAQLV 333
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 167/369 (45%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 5 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 62
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 63 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 169
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT H+YTGDQ
Sbjct: 170 ---------------------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRAR 202
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 203 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 262
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 263 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 318
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 319 EMSYTAQLV 327
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 167/369 (45%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 6 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 63
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 64 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 170
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT H+YTGDQ
Sbjct: 171 ---------------------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRAR 203
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 204 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 263
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 264 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 319
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 320 EMSYTAQLV 328
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 167/369 (45%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 167
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT ++YTGDQ
Sbjct: 168 ---------------------------GLVEGLMTTINAYTGDQNTQDAPHRKGDKRRAR 200
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 201 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 260
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 261 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 316
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 317 EMSYTAQLV 325
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 166/369 (44%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S AS TTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDF------------ 167
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT H+YTGDQ
Sbjct: 168 ---------------------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRAR 200
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 201 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 260
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 261 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 316
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 317 EMSYTAQLV 325
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 166/369 (44%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S AS TTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDF------------ 167
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT H+YTGDQ
Sbjct: 168 ---------------------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRAR 200
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 201 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 260
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 261 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 316
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 317 EMSYTAQLV 325
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 166/369 (44%), Gaps = 52/369 (14%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSL 248
+AP GD+ T V N E ++S AS TTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDF------------ 167
Query: 249 SLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXX 306
G+++G MTT ++YTGDQ
Sbjct: 168 ---------------------------GLVEGLMTTINAYTGDQNTQDAPHRKGDKRRAR 200
Query: 307 XXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVN 365
NI+P ST +G A RVP K+ E+VN
Sbjct: 201 AAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVN 260
Query: 366 AAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDN 422
A + +A NE G ++ +VS D M GD +VKV AWYDN
Sbjct: 261 EAMK-NASNESFGY---TEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN 316
Query: 423 EWGYSQRVV 431
E Y+ ++V
Sbjct: 317 EMSYTAQLV 325
>pdb|2AT3|X Chain X, 1.00 A Crystal Structure Of L123vL133V MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Imidazole At Ph 5.6
Length = 184
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|2AT0|X Chain X, 1.00 A Crystal Structure Of L133v Mutant Of Nitrophorin
4 From Rhodnius Prolixus Complexed With Nitric Oxide At
Ph 5.6
pdb|3C76|X Chain X, 1.07 A Crystal Structure Of L133v Mutant Of Nitrophorin
4 From Rhodnius Prolixus Complexed With Ammonia At Ph
7.5
Length = 184
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SY0|A Chain A, 1.15 A Crystal Structure Of T121v Mutant Of Nitrophorin
4 From Rhodnius Prolixus
pdb|1SY1|A Chain A, 1.0 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
Complexed With Nitric Oxide
Length = 184
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SXU|A Chain A, 1.4 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Imidazole
pdb|1SXY|A Chain A, 1.07 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus
pdb|1SY3|A Chain A, 1.00 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1NP4|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1EQD|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With Cn
pdb|1ERX|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With No
pdb|1D3S|A Chain A, 1.4 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixis At Ph5.6.
pdb|1D2U|A Chain A, 1.15 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1IKE|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Histamine At 1.5 A Resolution
pdb|1IKJ|A Chain A, 1.27 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Imidazole
pdb|1KOI|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At 1.08 A
Resolution
pdb|1ML7|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With 4-
Iodopyrazole
pdb|1U0X|A Chain A, Crystal Structure Of Nitrophorin 4 Under Pressure Of
Xenon (200 Psi)
pdb|1X8N|A Chain A, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 7.4
pdb|1X8O|A Chain A, 1.01 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 5.6
pdb|1X8P|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Ammonia At Ph 7.4
pdb|1X8Q|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus In Complex With Water At Ph 5.6
pdb|1YWA|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With Co At Ph 5.6
pdb|1YWB|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With No At Ph 5.6
pdb|1YWC|A Chain A, Structure Of The Ferrous Co Complex Of Np4 From Rhodnius
Prolixus At Ph 7.0
pdb|1YWD|A Chain A, 1.08 A Structure Of Ferrous Np4 (Aquo Complex)
pdb|2AT5|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Nitric Oxide At Ph 5.6
pdb|2AT6|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Water At Ph 5.6
pdb|2AT8|X Chain X, 0.96 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Nitric Oxide At Ph
5.6
pdb|2OFM|X Chain X, 1.11 A Crystal Structure Of Apo Nitrophorin 4 From
Rhodnius Prolixus
pdb|3C77|X Chain X, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Ammonia At Ph 7.5
pdb|3C78|X Chain X, 0.98 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Ammonia At Ph 7.5
pdb|3MVF|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3TGA|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus At Ph 7.4
pdb|3TGB|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Imidazole At Ph 7.4
pdb|3TGC|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SXW|A Chain A, 1.05 A Crystal Structure Of D30a Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3FLL|A Chain A, Crystal Structure Of E55q Mutant Of Nitrophorin 4
Length = 184
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKQALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SXX|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4 Complexed With Nitric Oxide
pdb|1SY2|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4
Length = 184
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 195 DIPTYVVGVN--ADAYKPDEPIISNASCTTNCLAPFVKVL 232
D+P V VN DA++ + II+N +CTT P +KVL
Sbjct: 120 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVL 159
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 195 DIPTYVVGVN--ADAYKPDEPIISNASCTTNCLAPFVKVL 232
D+P V VN DA++ + II+N +CTT P +KVL
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVL 141
>pdb|2OFR|X Chain X, 1.00 A Crystal Structure Of V36aD129AL130A MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Nitric Oxide At Ph 5.6
Length = 184
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 152 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYK 209
LP G L +DLV+ G + R A + GA V ++ + + +P V VN +
Sbjct: 55 LPEGPLPVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIF 114
Query: 210 PDEPIISNASCTTNCLAPFVKVLDQKF 236
II+N +CTT LA + L + F
Sbjct: 115 QHRGIIANPNCTTAILAMALWPLHRAF 141
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 89 GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 130
GR D+P E VA N G A D+TL I+E D P G
Sbjct: 74 GRDDAPYECVAENGVGDAVSA------DATLTIYEGDKTPAG 109
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 89 GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 130
GR D+P E VA N G A D+TL I+E D P G
Sbjct: 76 GRDDAPYECVAENGVGDAVSA------DATLTIYEGDKTPAG 111
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 55 SSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHL 112
++++ K+ Q + +VAI GFG +G R +H D VVA+ D TG V + +
Sbjct: 221 TAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFH---DHGARVVAVQDHTGTVYNEAGI 277
Query: 113 LKYD 116
YD
Sbjct: 278 DPYD 281
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 55 SSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHL 112
++++ K+ Q + +VAI GFG +G R +H D VVA+ D TG V + +
Sbjct: 205 TAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFH---DHGARVVAVQDHTGTVYNEAGI 261
Query: 113 LKYD 116
YD
Sbjct: 262 DPYD 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,368,578
Number of Sequences: 62578
Number of extensions: 447313
Number of successful extensions: 1349
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 166
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)