Query 013492
Match_columns 442
No_of_seqs 219 out of 1708
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 2E-126 5E-131 978.5 34.6 384 18-441 25-412 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 5E-123 1E-127 945.7 35.3 394 6-442 1-395 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 4E-122 9E-127 928.6 30.1 335 67-441 2-355 (361)
4 PRK07403 glyceraldehyde-3-phos 100.0 2E-115 4E-120 875.5 33.0 333 69-441 2-336 (337)
5 PRK15425 gapA glyceraldehyde-3 100.0 6E-115 1E-119 870.4 33.2 330 67-439 1-331 (331)
6 PTZ00023 glyceraldehyde-3-phos 100.0 2E-114 5E-119 867.9 32.5 333 67-441 1-337 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 9E-114 2E-118 865.2 33.2 333 67-441 1-334 (343)
8 COG0057 GapA Glyceraldehyde-3- 100.0 4E-113 1E-117 852.5 32.6 333 68-441 1-334 (335)
9 PLN02272 glyceraldehyde-3-phos 100.0 8E-111 2E-115 861.0 33.7 329 69-439 86-416 (421)
10 PRK13535 erythrose 4-phosphate 100.0 7E-110 2E-114 835.4 32.7 331 69-439 2-334 (336)
11 PTZ00353 glycosomal glyceralde 100.0 8E-110 2E-114 836.5 32.6 329 67-440 1-336 (342)
12 PLN02358 glyceraldehyde-3-phos 100.0 2E-109 4E-114 832.7 33.4 331 67-439 4-337 (338)
13 PRK08955 glyceraldehyde-3-phos 100.0 5E-109 1E-113 828.4 30.5 329 67-439 1-332 (334)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 8E-109 2E-113 825.1 30.9 323 70-432 1-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 2E-108 4E-113 849.9 32.1 333 68-441 127-472 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 3E-106 7E-111 805.7 31.4 323 70-432 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 3.4E-86 7.4E-91 643.9 12.3 283 79-440 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 1.1E-57 2.4E-62 457.8 21.6 235 71-373 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 1.3E-51 2.8E-56 374.6 13.0 157 225-420 1-157 (157)
20 PRK04207 glyceraldehyde-3-phos 100.0 3.9E-48 8.4E-53 388.4 22.9 250 68-387 1-263 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 100.0 1.1E-48 2.3E-53 354.6 11.0 149 69-220 1-151 (151)
22 smart00846 Gp_dh_N Glyceraldeh 100.0 6.4E-44 1.4E-48 321.8 16.1 149 69-220 1-149 (149)
23 PRK14874 aspartate-semialdehyd 100.0 2.4E-36 5.1E-41 301.7 20.3 231 69-371 2-268 (334)
24 PRK06901 aspartate-semialdehyd 100.0 1.7E-35 3.7E-40 296.1 21.1 234 68-373 3-255 (322)
25 TIGR01296 asd_B aspartate-semi 100.0 1.4E-35 3.1E-40 297.5 19.7 233 70-372 1-272 (339)
26 TIGR01745 asd_gamma aspartate- 100.0 2.2E-32 4.8E-37 278.1 19.4 237 69-373 1-299 (366)
27 COG0136 Asd Aspartate-semialde 100.0 6.4E-32 1.4E-36 271.3 20.8 295 68-434 1-330 (334)
28 PRK06728 aspartate-semialdehyd 100.0 1.7E-30 3.6E-35 262.9 19.5 295 67-440 4-344 (347)
29 PRK06598 aspartate-semialdehyd 100.0 6.9E-30 1.5E-34 260.2 18.4 233 69-373 2-301 (369)
30 PRK08664 aspartate-semialdehyd 100.0 3.5E-27 7.6E-32 236.9 24.4 239 67-373 2-268 (349)
31 TIGR00978 asd_EA aspartate-sem 100.0 4.2E-27 9.2E-32 235.6 21.9 254 69-390 1-282 (341)
32 PRK08040 putative semialdehyde 99.9 1.2E-25 2.5E-30 226.7 25.0 233 67-371 3-267 (336)
33 PLN02383 aspartate semialdehyd 99.9 3.6E-25 7.8E-30 223.5 20.0 235 65-371 4-276 (344)
34 PRK05671 aspartate-semialdehyd 99.9 1.7E-24 3.7E-29 218.1 23.4 234 69-372 5-269 (336)
35 PRK00436 argC N-acetyl-gamma-g 99.9 5.1E-21 1.1E-25 192.4 23.4 236 67-371 1-263 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.8 9E-20 1.9E-24 183.8 18.4 234 69-373 1-268 (346)
37 PLN02968 Probable N-acetyl-gam 99.8 3.1E-19 6.7E-24 182.8 22.0 242 66-376 36-307 (381)
38 PRK11863 N-acetyl-gamma-glutam 99.7 7.3E-17 1.6E-21 162.0 19.7 216 67-373 1-237 (313)
39 KOG4777 Aspartate-semialdehyde 99.7 2.2E-17 4.7E-22 162.3 9.4 238 70-372 5-277 (361)
40 TIGR01851 argC_other N-acetyl- 99.6 2.1E-14 4.5E-19 144.3 18.4 217 69-371 2-236 (310)
41 PRK08300 acetaldehyde dehydrog 99.4 1.3E-12 2.8E-17 131.0 10.1 142 68-235 4-147 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.2 2.6E-10 5.7E-15 113.6 12.1 141 68-237 1-143 (285)
43 COG0002 ArgC Acetylglutamate s 98.8 2.3E-07 5.1E-12 95.0 16.4 241 67-374 1-272 (349)
44 PF01118 Semialdhyde_dh: Semia 98.7 1.2E-08 2.6E-13 88.1 5.2 113 70-208 1-118 (121)
45 PF02774 Semialdhyde_dhC: Semi 98.4 1.8E-06 3.9E-11 80.2 9.1 95 277-371 11-132 (184)
46 TIGR01921 DAP-DH diaminopimela 98.0 3.8E-05 8.2E-10 78.4 10.5 88 68-189 3-90 (324)
47 smart00859 Semialdhyde_dh Semi 97.9 2.5E-05 5.3E-10 67.1 6.5 114 70-208 1-120 (122)
48 PRK13301 putative L-aspartate 97.8 4.8E-05 1E-09 75.9 7.8 93 67-190 1-94 (267)
49 PRK13303 L-aspartate dehydroge 97.5 0.0001 2.2E-09 72.3 5.3 91 69-191 2-93 (265)
50 PRK06270 homoserine dehydrogen 97.5 0.00043 9.3E-09 70.4 8.8 37 67-103 1-44 (341)
51 TIGR00036 dapB dihydrodipicoli 97.4 0.00032 6.9E-09 69.1 6.2 95 69-188 2-97 (266)
52 COG1712 Predicted dinucleotide 97.2 0.00096 2.1E-08 65.8 7.1 93 69-191 1-93 (255)
53 PF01113 DapB_N: Dihydrodipico 97.2 0.00066 1.4E-08 59.5 5.4 34 69-104 1-35 (124)
54 PRK13302 putative L-aspartate 97.1 0.0017 3.8E-08 64.1 8.5 87 68-183 6-92 (271)
55 PRK06813 homoserine dehydrogen 97.0 0.0008 1.7E-08 69.3 5.2 37 67-103 1-44 (346)
56 PRK13304 L-aspartate dehydroge 97.0 0.0022 4.8E-08 63.0 7.7 92 69-191 2-93 (265)
57 PRK00048 dihydrodipicolinate r 97.0 0.002 4.4E-08 63.0 7.0 87 69-188 2-89 (257)
58 PRK08374 homoserine dehydrogen 96.9 0.0012 2.7E-08 67.2 5.6 37 67-103 1-44 (336)
59 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0029 6.2E-08 53.2 6.8 94 69-191 1-94 (120)
60 PRK11579 putative oxidoreducta 96.9 0.0041 8.8E-08 62.6 9.1 92 68-191 4-96 (346)
61 COG0460 ThrA Homoserine dehydr 96.8 0.0027 5.9E-08 65.3 6.6 37 67-103 2-45 (333)
62 PRK06349 homoserine dehydrogen 96.7 0.0022 4.8E-08 67.2 5.7 93 68-190 3-103 (426)
63 PRK06392 homoserine dehydrogen 96.6 0.0033 7.2E-08 64.2 6.0 35 69-103 1-40 (326)
64 COG0289 DapB Dihydrodipicolina 96.4 0.014 3E-07 58.6 8.6 99 67-190 1-101 (266)
65 PRK09414 glutamate dehydrogena 96.0 0.028 6.1E-07 60.0 9.0 101 68-190 232-343 (445)
66 PF03447 NAD_binding_3: Homose 95.9 0.002 4.3E-08 55.0 0.1 87 75-190 1-89 (117)
67 PLN02775 Probable dihydrodipic 95.8 0.027 5.9E-07 57.1 7.4 141 66-237 9-155 (286)
68 cd01076 NAD_bind_1_Glu_DH NAD( 95.8 0.12 2.6E-06 50.3 11.5 34 67-103 30-63 (227)
69 PRK05447 1-deoxy-D-xylulose 5- 95.6 0.017 3.8E-07 60.6 5.4 114 69-188 2-120 (385)
70 PRK10206 putative oxidoreducta 95.6 0.036 7.8E-07 56.3 7.5 94 69-191 2-96 (344)
71 cd05211 NAD_bind_Glu_Leu_Phe_V 95.1 0.21 4.4E-06 48.4 10.6 35 67-104 22-56 (217)
72 COG0673 MviM Predicted dehydro 95.1 0.094 2E-06 51.5 8.4 97 67-191 2-99 (342)
73 COG4569 MhpF Acetaldehyde dehy 94.8 0.091 2E-06 51.9 7.3 137 68-236 4-146 (310)
74 PLN02696 1-deoxy-D-xylulose-5- 94.8 0.33 7.1E-06 52.2 12.0 117 68-189 57-179 (454)
75 PF02826 2-Hacid_dh_C: D-isome 94.6 0.048 1E-06 50.3 4.7 33 69-104 37-69 (178)
76 TIGR03736 PRTRC_ThiF PRTRC sys 93.9 0.14 3.1E-06 50.6 6.7 106 67-177 10-125 (244)
77 cd05313 NAD_bind_2_Glu_DH NAD( 93.9 0.26 5.6E-06 49.2 8.4 106 68-190 38-153 (254)
78 KOG4354 N-acetyl-gamma-glutamy 93.8 1.1 2.4E-05 45.5 12.5 272 62-423 13-309 (340)
79 TIGR02130 dapB_plant dihydrodi 93.8 0.14 3.1E-06 51.7 6.4 92 69-187 1-98 (275)
80 PLN02700 homoserine dehydrogen 93.7 0.13 2.8E-06 54.1 6.2 37 67-103 2-44 (377)
81 PLN02477 glutamate dehydrogena 93.6 0.56 1.2E-05 49.8 10.7 33 68-103 206-238 (410)
82 PRK05472 redox-sensing transcr 93.6 0.17 3.6E-06 48.1 6.2 97 68-192 84-180 (213)
83 COG4091 Predicted homoserine d 93.5 0.23 5.1E-06 52.2 7.6 35 67-103 16-50 (438)
84 PRK09436 thrA bifunctional asp 93.1 0.12 2.5E-06 59.0 5.0 37 67-103 464-506 (819)
85 PRK08410 2-hydroxyacid dehydro 92.7 0.13 2.9E-06 51.9 4.3 32 68-102 145-176 (311)
86 PRK09466 metL bifunctional asp 92.3 0.089 1.9E-06 59.9 2.8 38 66-103 456-500 (810)
87 PRK06487 glycerate dehydrogena 92.1 0.17 3.7E-06 51.3 4.3 31 69-102 149-179 (317)
88 PLN00016 RNA-binding protein; 91.7 0.6 1.3E-05 47.4 7.7 38 62-102 46-88 (378)
89 PRK06932 glycerate dehydrogena 91.7 0.21 4.5E-06 50.7 4.3 30 69-101 148-177 (314)
90 PTZ00079 NADP-specific glutama 91.5 0.86 1.9E-05 49.1 8.8 104 68-189 237-351 (454)
91 COG0569 TrkA K+ transport syst 91.3 0.4 8.6E-06 46.4 5.7 99 69-193 1-103 (225)
92 cd01075 NAD_bind_Leu_Phe_Val_D 91.0 0.94 2E-05 43.0 7.8 31 69-103 29-59 (200)
93 CHL00194 ycf39 Ycf39; Provisio 90.9 0.58 1.3E-05 46.2 6.5 31 69-102 1-32 (317)
94 KOG2741 Dimeric dihydrodiol de 90.8 0.9 2E-05 47.5 7.9 92 67-188 5-101 (351)
95 PLN02928 oxidoreductase family 90.6 0.3 6.5E-06 50.2 4.4 32 69-103 160-191 (347)
96 COG1052 LdhA Lactate dehydroge 90.6 0.28 6.1E-06 50.3 4.1 31 69-102 147-177 (324)
97 COG0111 SerA Phosphoglycerate 90.5 0.31 6.8E-06 49.9 4.4 31 69-102 143-173 (324)
98 PRK08306 dipicolinate synthase 90.5 0.51 1.1E-05 47.4 5.8 32 68-102 152-183 (296)
99 PRK15409 bifunctional glyoxyla 90.3 0.33 7.2E-06 49.5 4.3 30 69-101 146-176 (323)
100 TIGR02853 spore_dpaA dipicolin 90.3 0.45 9.8E-06 47.7 5.2 31 69-102 152-182 (287)
101 PRK08229 2-dehydropantoate 2-r 90.1 2 4.4E-05 42.8 9.7 33 67-102 1-33 (341)
102 PRK11790 D-3-phosphoglycerate 90.1 0.35 7.7E-06 50.8 4.5 31 69-102 152-182 (409)
103 PRK06436 glycerate dehydrogena 89.9 0.39 8.4E-06 48.7 4.4 31 69-102 123-153 (303)
104 PRK14031 glutamate dehydrogena 89.8 1.3 2.9E-05 47.6 8.4 105 68-190 228-342 (444)
105 PRK13243 glyoxylate reductase; 89.8 0.4 8.6E-06 49.0 4.4 31 69-102 151-181 (333)
106 PRK07574 formate dehydrogenase 89.5 0.41 8.9E-06 50.3 4.4 31 69-102 193-223 (385)
107 PRK05476 S-adenosyl-L-homocyst 89.5 0.85 1.9E-05 48.6 6.7 30 69-101 213-242 (425)
108 PF03807 F420_oxidored: NADP o 89.5 0.9 2E-05 36.9 5.5 43 70-113 1-43 (96)
109 PF10727 Rossmann-like: Rossma 89.5 0.31 6.7E-06 43.8 2.9 33 67-102 9-41 (127)
110 cd00401 AdoHcyase S-adenosyl-L 89.3 0.92 2E-05 48.2 6.8 29 69-100 203-231 (413)
111 PF05368 NmrA: NmrA-like famil 89.3 0.32 6.9E-06 45.5 3.0 95 71-190 1-102 (233)
112 PRK07634 pyrroline-5-carboxyla 89.1 1 2.2E-05 42.7 6.4 35 68-102 4-39 (245)
113 PRK11199 tyrA bifunctional cho 88.6 1.1 2.4E-05 46.5 6.7 32 67-101 97-129 (374)
114 PRK15469 ghrA bifunctional gly 88.6 0.58 1.3E-05 47.5 4.6 31 69-102 137-167 (312)
115 PLN02494 adenosylhomocysteinas 88.5 1.4 3E-05 47.9 7.5 30 69-101 255-284 (477)
116 COG2910 Putative NADH-flavin r 88.3 1.8 3.9E-05 42.3 7.4 31 69-102 1-32 (211)
117 PLN02306 hydroxypyruvate reduc 88.2 0.58 1.3E-05 49.1 4.4 31 69-102 166-197 (386)
118 PRK15438 erythronate-4-phospha 88.2 0.59 1.3E-05 49.0 4.4 30 69-101 117-146 (378)
119 PTZ00117 malate dehydrogenase; 88.0 2.4 5.1E-05 43.1 8.5 24 68-91 5-28 (319)
120 PLN03139 formate dehydrogenase 87.8 0.59 1.3E-05 49.2 4.2 30 69-101 200-229 (386)
121 PRK12480 D-lactate dehydrogena 87.8 0.69 1.5E-05 47.3 4.6 31 69-102 147-177 (330)
122 PRK14030 glutamate dehydrogena 87.5 2.9 6.4E-05 45.0 9.2 105 68-189 228-342 (445)
123 COG2344 AT-rich DNA-binding pr 87.4 1 2.3E-05 43.9 5.2 102 68-197 84-185 (211)
124 TIGR01761 thiaz-red thiazoliny 87.2 2.1 4.6E-05 44.3 7.8 91 68-188 3-95 (343)
125 PRK11880 pyrroline-5-carboxyla 87.2 0.83 1.8E-05 44.1 4.5 35 67-101 1-35 (267)
126 PRK07819 3-hydroxybutyryl-CoA 87.2 2.7 5.9E-05 41.9 8.3 148 70-237 7-179 (286)
127 PLN02819 lysine-ketoglutarate 87.2 1.4 3E-05 51.9 7.1 97 69-191 570-679 (1042)
128 cd00755 YgdL_like Family of ac 86.7 1.1 2.3E-05 44.0 5.0 151 68-237 11-167 (231)
129 PF03435 Saccharop_dh: Sacchar 86.6 0.6 1.3E-05 47.6 3.4 95 71-189 1-96 (386)
130 cd08230 glucose_DH Glucose deh 86.6 6.2 0.00013 39.4 10.4 139 70-234 175-315 (355)
131 PF03446 NAD_binding_2: NAD bi 86.3 1.1 2.5E-05 40.5 4.7 30 69-101 2-31 (163)
132 PF02670 DXP_reductoisom: 1-de 85.8 1.6 3.5E-05 39.5 5.3 115 71-189 1-120 (129)
133 PRK11559 garR tartronate semia 85.6 1.1 2.3E-05 44.1 4.4 32 67-101 1-32 (296)
134 cd01483 E1_enzyme_family Super 85.2 1.4 2.9E-05 38.8 4.5 100 70-173 1-104 (143)
135 TIGR01327 PGDH D-3-phosphoglyc 85.1 1 2.3E-05 48.7 4.4 31 69-102 139-169 (525)
136 TIGR01035 hemA glutamyl-tRNA r 85.0 1.5 3.3E-05 46.1 5.4 33 69-103 181-213 (417)
137 PLN02712 arogenate dehydrogena 84.6 1.4 3E-05 49.5 5.2 34 67-103 368-401 (667)
138 cd05213 NAD_bind_Glutamyl_tRNA 84.6 4.1 8.9E-05 41.1 8.1 31 69-101 179-209 (311)
139 TIGR03649 ergot_EASG ergot alk 84.6 2.7 5.9E-05 40.4 6.6 30 70-102 1-31 (285)
140 PRK00045 hemA glutamyl-tRNA re 84.4 2.7 6E-05 44.1 7.1 31 69-102 183-214 (423)
141 PRK00257 erythronate-4-phospha 84.3 1.2 2.7E-05 46.7 4.4 30 69-101 117-146 (381)
142 PRK13581 D-3-phosphoglycerate 84.2 1.2 2.6E-05 48.3 4.4 31 69-102 141-171 (526)
143 PF13380 CoA_binding_2: CoA bi 84.1 3.2 6.9E-05 36.2 6.2 83 70-191 2-88 (116)
144 PRK08605 D-lactate dehydrogena 84.0 1.3 2.8E-05 45.2 4.4 30 69-101 147-177 (332)
145 COG1063 Tdh Threonine dehydrog 83.6 2.3 5E-05 43.4 5.9 31 70-103 171-201 (350)
146 COG0287 TyrA Prephenate dehydr 83.0 2.8 6E-05 42.3 6.2 25 67-91 2-26 (279)
147 PRK13403 ketol-acid reductoiso 82.9 1.5 3.3E-05 45.6 4.4 32 69-103 17-48 (335)
148 PLN02256 arogenate dehydrogena 82.7 1.9 4.1E-05 43.7 4.9 34 67-103 35-68 (304)
149 TIGR01202 bchC 2-desacetyl-2-h 82.5 6.1 0.00013 38.9 8.3 30 70-102 147-176 (308)
150 PF02629 CoA_binding: CoA bind 82.5 1.5 3.3E-05 36.6 3.5 93 68-191 3-95 (96)
151 PRK07417 arogenate dehydrogena 82.2 1.7 3.8E-05 42.7 4.3 31 69-102 1-31 (279)
152 PTZ00082 L-lactate dehydrogena 82.0 2.5 5.4E-05 43.1 5.4 32 69-103 7-38 (321)
153 PRK06223 malate dehydrogenase; 81.9 6.7 0.00014 39.0 8.3 31 69-101 3-33 (307)
154 COG1748 LYS9 Saccharopine dehy 81.3 2.3 5E-05 45.0 5.1 93 69-184 2-94 (389)
155 PRK08818 prephenate dehydrogen 80.6 4.1 8.9E-05 42.7 6.6 31 68-100 4-35 (370)
156 PLN02712 arogenate dehydrogena 80.5 2.1 4.5E-05 48.0 4.7 33 68-103 52-84 (667)
157 PF01488 Shikimate_DH: Shikima 80.0 4.8 0.0001 35.6 5.9 33 69-103 13-45 (135)
158 COG2085 Predicted dinucleotide 79.6 4.6 0.0001 39.7 6.1 92 69-191 2-93 (211)
159 cd08298 CAD2 Cinnamyl alcohol 79.4 23 0.0005 34.4 11.0 84 70-186 170-253 (329)
160 PF00056 Ldh_1_N: lactate/mala 79.0 4.2 9.1E-05 36.5 5.3 23 69-91 1-24 (141)
161 PF12338 RbcS: Ribulose-1,5-bi 79.0 1.1 2.3E-05 34.2 1.3 22 18-39 22-43 (45)
162 PRK15116 sulfur acceptor prote 78.7 2.4 5.1E-05 42.7 3.9 24 68-91 30-53 (268)
163 TIGR00243 Dxr 1-deoxy-D-xylulo 78.6 3.3 7.2E-05 44.0 5.2 42 69-111 2-44 (389)
164 PRK03369 murD UDP-N-acetylmura 78.1 8.2 0.00018 41.3 8.0 84 69-184 13-96 (488)
165 PRK06545 prephenate dehydrogen 77.8 6.8 0.00015 40.3 7.1 31 70-101 2-32 (359)
166 PRK01438 murD UDP-N-acetylmura 77.8 12 0.00027 39.4 9.1 30 69-101 17-46 (480)
167 PLN00106 malate dehydrogenase 77.4 16 0.00034 37.7 9.5 23 69-91 19-42 (323)
168 COG1064 AdhP Zn-dependent alco 77.0 14 0.00031 38.6 9.1 93 69-191 168-261 (339)
169 PLN03209 translocon at the inn 76.5 13 0.00027 41.6 9.1 31 69-102 81-112 (576)
170 PRK09880 L-idonate 5-dehydroge 75.6 11 0.00024 37.5 7.7 29 70-101 172-201 (343)
171 PRK12475 thiamine/molybdopteri 75.1 3.9 8.4E-05 42.2 4.5 23 69-91 25-47 (338)
172 PRK08507 prephenate dehydrogen 74.8 4.5 9.7E-05 39.6 4.6 32 69-101 1-32 (275)
173 cd01484 E1-2_like Ubiquitin ac 74.7 4.1 9E-05 40.0 4.4 127 70-203 1-138 (234)
174 PLN02688 pyrroline-5-carboxyla 74.4 4.6 0.0001 38.9 4.6 35 69-103 1-36 (266)
175 PTZ00075 Adenosylhomocysteinas 74.2 4.2 9.2E-05 44.2 4.6 30 69-101 255-284 (476)
176 PRK07502 cyclohexadienyl dehyd 74.2 4.8 0.0001 40.0 4.7 33 68-101 6-38 (307)
177 PF00208 ELFV_dehydrog: Glutam 73.9 4.6 0.0001 39.9 4.5 104 68-190 32-146 (244)
178 PRK09599 6-phosphogluconate de 73.7 4.5 9.7E-05 40.3 4.4 31 69-102 1-31 (301)
179 KOG0069 Glyoxylate/hydroxypyru 73.1 2.6 5.7E-05 43.9 2.7 25 66-90 160-184 (336)
180 PRK09496 trkA potassium transp 73.0 4.5 9.7E-05 41.8 4.4 31 69-102 1-31 (453)
181 PRK06476 pyrroline-5-carboxyla 72.9 5 0.00011 38.8 4.4 23 69-91 1-23 (258)
182 TIGR01505 tartro_sem_red 2-hyd 72.9 4.1 8.9E-05 40.0 3.9 30 70-102 1-30 (291)
183 PF13460 NAD_binding_10: NADH( 72.6 6.1 0.00013 35.2 4.6 30 71-103 1-31 (183)
184 cd08239 THR_DH_like L-threonin 72.5 7.4 0.00016 38.2 5.6 98 69-190 165-263 (339)
185 PF00670 AdoHcyase_NAD: S-aden 72.5 16 0.00035 34.5 7.5 31 69-103 24-54 (162)
186 KOG0068 D-3-phosphoglycerate d 72.5 4.6 0.0001 42.7 4.3 31 70-103 148-178 (406)
187 PRK12490 6-phosphogluconate de 72.4 5.1 0.00011 39.9 4.4 30 70-102 2-31 (299)
188 PRK12464 1-deoxy-D-xylulose 5- 72.3 2.4 5.3E-05 44.9 2.2 112 73-190 1-117 (383)
189 PRK14619 NAD(P)H-dependent gly 72.1 5.7 0.00012 39.7 4.7 31 69-102 5-35 (308)
190 cd08242 MDR_like Medium chain 72.0 22 0.00048 34.4 8.7 84 69-184 157-240 (319)
191 PF02254 TrkA_N: TrkA-N domain 71.7 7.3 0.00016 32.5 4.6 29 71-102 1-29 (116)
192 COG0039 Mdh Malate/lactate deh 71.6 9.8 0.00021 39.4 6.4 138 69-237 1-160 (313)
193 cd00757 ThiF_MoeB_HesA_family 71.6 3 6.5E-05 40.1 2.5 24 68-91 21-44 (228)
194 TIGR00872 gnd_rel 6-phosphoglu 71.5 5.4 0.00012 39.8 4.4 31 69-102 1-31 (298)
195 COG0451 WcaG Nucleoside-diphos 71.5 19 0.0004 34.4 7.9 30 70-102 2-32 (314)
196 COG0771 MurD UDP-N-acetylmuram 71.1 20 0.00044 38.8 8.8 88 68-184 7-95 (448)
197 PLN02214 cinnamoyl-CoA reducta 70.6 19 0.00041 36.2 8.1 31 69-102 11-42 (342)
198 PRK03659 glutathione-regulated 70.4 6.2 0.00013 43.5 4.9 39 68-111 400-438 (601)
199 PRK08644 thiamine biosynthesis 69.7 3.6 7.9E-05 39.5 2.6 24 68-91 28-51 (212)
200 PF03721 UDPG_MGDP_dh_N: UDP-g 69.3 6.6 0.00014 37.0 4.2 30 69-101 1-30 (185)
201 COG0334 GdhA Glutamate dehydro 69.3 23 0.00051 38.0 8.7 33 69-104 208-240 (411)
202 cd01487 E1_ThiF_like E1_ThiF_l 69.3 4.3 9.4E-05 37.7 3.0 22 70-91 1-22 (174)
203 cd05293 LDH_1 A subgroup of L- 69.0 11 0.00024 38.4 6.1 31 69-100 4-34 (312)
204 PRK12491 pyrroline-5-carboxyla 68.9 7.5 0.00016 38.6 4.7 35 67-101 1-36 (272)
205 TIGR03366 HpnZ_proposed putati 68.8 36 0.00077 33.0 9.3 137 70-235 123-261 (280)
206 cd08281 liver_ADH_like1 Zinc-d 68.7 23 0.00049 35.8 8.2 95 70-188 194-289 (371)
207 PRK03562 glutathione-regulated 68.6 6.7 0.00014 43.5 4.7 37 68-109 400-436 (621)
208 PF02737 3HCDH_N: 3-hydroxyacy 68.4 7.9 0.00017 36.1 4.5 29 70-101 1-29 (180)
209 TIGR03451 mycoS_dep_FDH mycoth 68.3 25 0.00054 35.2 8.4 30 69-101 178-208 (358)
210 PLN00203 glutamyl-tRNA reducta 66.9 14 0.00031 40.5 6.7 33 69-103 267-299 (519)
211 TIGR02354 thiF_fam2 thiamine b 66.5 4.5 9.8E-05 38.5 2.6 24 68-91 21-44 (200)
212 TIGR00936 ahcY adenosylhomocys 65.8 7.9 0.00017 41.3 4.4 30 69-101 196-225 (406)
213 cd05294 LDH-like_MDH_nadp A la 65.2 15 0.00032 37.2 6.1 32 69-101 1-33 (309)
214 PLN02260 probable rhamnose bio 65.2 25 0.00053 38.8 8.2 33 69-102 7-40 (668)
215 PRK00094 gpsA NAD(P)H-dependen 65.2 9.6 0.00021 37.5 4.6 30 69-101 2-31 (325)
216 PRK05479 ketol-acid reductoiso 65.1 8 0.00017 40.1 4.2 31 69-102 18-48 (330)
217 PLN02586 probable cinnamyl alc 64.8 24 0.00052 35.7 7.5 30 70-102 186-215 (360)
218 TIGR03026 NDP-sugDHase nucleot 64.7 8.2 0.00018 40.2 4.3 31 69-102 1-31 (411)
219 TIGR02356 adenyl_thiF thiazole 64.6 5.1 0.00011 37.9 2.5 110 69-183 22-137 (202)
220 PRK10669 putative cation:proto 64.1 10 0.00022 41.1 5.0 34 66-102 415-448 (558)
221 COG0743 Dxr 1-deoxy-D-xylulose 63.9 12 0.00026 39.8 5.3 41 69-110 2-43 (385)
222 PLN02545 3-hydroxybutyryl-CoA 63.8 10 0.00022 37.5 4.5 30 70-102 6-35 (295)
223 PRK06718 precorrin-2 dehydroge 63.5 69 0.0015 30.6 9.9 31 69-102 11-41 (202)
224 PRK09424 pntA NAD(P) transhydr 62.6 61 0.0013 35.7 10.5 30 68-100 165-194 (509)
225 PRK15059 tartronate semialdehy 62.4 10 0.00022 37.9 4.3 29 70-101 2-30 (292)
226 KOG1502 Flavonol reductase/cin 62.3 35 0.00076 35.7 8.2 47 67-116 5-53 (327)
227 PRK06928 pyrroline-5-carboxyla 61.6 13 0.00027 36.8 4.7 34 69-102 2-36 (277)
228 PLN02514 cinnamyl-alcohol dehy 61.2 22 0.00048 35.8 6.5 31 69-102 182-212 (357)
229 TIGR00465 ilvC ketol-acid redu 61.1 11 0.00024 38.6 4.3 31 69-102 4-34 (314)
230 COG3804 Uncharacterized conser 61.0 12 0.00026 38.9 4.5 36 67-104 1-36 (350)
231 PRK05690 molybdopterin biosynt 60.9 6.2 0.00013 38.7 2.4 97 69-174 33-138 (245)
232 PRK07679 pyrroline-5-carboxyla 60.8 13 0.00028 36.6 4.6 34 69-102 4-38 (279)
233 PRK14806 bifunctional cyclohex 60.7 22 0.00047 39.8 6.9 33 69-102 4-36 (735)
234 TIGR01915 npdG NADPH-dependent 60.6 14 0.0003 35.1 4.6 30 69-101 1-31 (219)
235 PLN02740 Alcohol dehydrogenase 59.9 17 0.00036 37.0 5.4 30 69-101 200-230 (381)
236 PRK06035 3-hydroxyacyl-CoA deh 59.6 13 0.00029 36.6 4.5 29 70-101 5-33 (291)
237 PRK06249 2-dehydropantoate 2-r 59.5 14 0.00031 36.9 4.7 24 68-91 5-28 (313)
238 cd05290 LDH_3 A subgroup of L- 59.3 15 0.00031 37.5 4.8 22 70-91 1-22 (307)
239 PRK11064 wecC UDP-N-acetyl-D-m 58.8 13 0.00029 39.1 4.6 31 69-102 4-34 (415)
240 PLN02602 lactate dehydrogenase 58.7 17 0.00038 37.8 5.3 23 69-91 38-60 (350)
241 PRK14618 NAD(P)H-dependent gly 58.6 14 0.0003 37.1 4.5 31 69-102 5-35 (328)
242 PRK09260 3-hydroxybutyryl-CoA 58.5 13 0.00029 36.6 4.3 29 70-101 3-31 (288)
243 PRK06522 2-dehydropantoate 2-r 58.5 15 0.00032 35.8 4.5 30 69-101 1-30 (304)
244 cd05283 CAD1 Cinnamyl alcohol 58.2 62 0.0013 31.9 8.9 88 69-184 171-258 (337)
245 cd01338 MDH_choloroplast_like 57.7 21 0.00045 36.6 5.7 23 68-90 2-25 (322)
246 PRK06129 3-hydroxyacyl-CoA deh 57.6 14 0.00031 36.9 4.3 31 69-102 3-33 (308)
247 PRK05808 3-hydroxybutyryl-CoA 57.4 14 0.00031 36.2 4.3 29 70-101 5-33 (282)
248 PLN02662 cinnamyl-alcohol dehy 57.4 25 0.00054 34.1 5.9 30 69-101 5-35 (322)
249 cd01490 Ube1_repeat2 Ubiquitin 57.1 17 0.00037 39.2 5.1 162 70-239 1-190 (435)
250 cd01486 Apg7 Apg7 is an E1-lik 56.8 6.6 0.00014 40.6 1.9 22 70-91 1-22 (307)
251 PRK15461 NADH-dependent gamma- 56.2 15 0.00032 36.6 4.3 30 70-102 3-32 (296)
252 cd08269 Zn_ADH9 Alcohol dehydr 56.1 14 0.0003 35.3 3.8 31 69-102 131-162 (312)
253 TIGR03201 dearomat_had 6-hydro 55.8 49 0.0011 33.0 7.8 30 69-101 168-197 (349)
254 PRK06130 3-hydroxybutyryl-CoA 55.7 17 0.00037 36.0 4.6 30 69-101 5-34 (311)
255 cd08231 MDR_TM0436_like Hypoth 55.5 56 0.0012 32.5 8.2 31 69-102 179-210 (361)
256 PRK07680 late competence prote 55.3 18 0.00039 35.3 4.6 22 69-90 1-22 (273)
257 TIGR01019 sucCoAalpha succinyl 55.3 35 0.00076 34.7 6.7 86 69-188 7-93 (286)
258 KOG0455 Homoserine dehydrogena 55.2 11 0.00025 38.6 3.2 36 68-103 3-44 (364)
259 PRK08618 ornithine cyclodeamin 55.0 23 0.0005 35.9 5.4 33 69-103 128-160 (325)
260 PF04321 RmlD_sub_bind: RmlD s 54.7 17 0.00037 35.9 4.4 30 69-101 1-31 (286)
261 PRK14573 bifunctional D-alanyl 54.4 48 0.001 37.9 8.3 30 70-103 6-36 (809)
262 TIGR02355 moeB molybdopterin s 54.2 9.7 0.00021 37.3 2.5 100 69-175 25-131 (240)
263 PRK06444 prephenate dehydrogen 54.2 15 0.00033 35.3 3.7 22 69-90 1-23 (197)
264 PRK05708 2-dehydropantoate 2-r 54.0 19 0.0004 36.2 4.5 24 67-90 1-24 (305)
265 PF01262 AlaDh_PNT_C: Alanine 53.9 24 0.00052 32.2 4.9 32 69-103 21-52 (168)
266 cd08301 alcohol_DH_plants Plan 53.7 25 0.00055 35.3 5.4 31 69-102 189-220 (369)
267 PRK07531 bifunctional 3-hydrox 53.7 18 0.0004 38.9 4.7 30 69-101 5-34 (495)
268 PTZ00431 pyrroline carboxylate 53.5 12 0.00027 36.5 3.2 22 69-90 4-25 (260)
269 PRK08655 prephenate dehydrogen 53.1 18 0.0004 38.4 4.5 30 69-101 1-31 (437)
270 PRK02006 murD UDP-N-acetylmura 53.0 74 0.0016 34.0 9.1 29 70-102 9-37 (498)
271 PLN02657 3,8-divinyl protochlo 52.8 27 0.00057 36.3 5.6 31 69-102 61-92 (390)
272 PLN02778 3,5-epimerase/4-reduc 52.0 23 0.00049 35.1 4.7 32 65-99 6-38 (298)
273 PRK03803 murD UDP-N-acetylmura 51.9 78 0.0017 33.1 8.9 30 70-103 8-37 (448)
274 PLN02289 ribulose-bisphosphate 51.5 8.9 0.00019 36.8 1.7 42 1-42 1-43 (176)
275 cd08233 butanediol_DH_like (2R 51.5 14 0.00031 36.5 3.2 29 70-101 175-204 (351)
276 cd08284 FDH_like_2 Glutathione 51.3 16 0.00035 35.7 3.6 29 69-100 169-198 (344)
277 PRK07530 3-hydroxybutyryl-CoA 51.2 22 0.00048 35.0 4.5 30 69-101 5-34 (292)
278 PRK01710 murD UDP-N-acetylmura 51.2 50 0.0011 34.9 7.4 30 70-103 16-45 (458)
279 cd08237 ribitol-5-phosphate_DH 51.0 47 0.001 33.2 6.9 30 70-101 166-196 (341)
280 cd08255 2-desacetyl-2-hydroxye 50.9 78 0.0017 29.9 8.0 30 69-101 99-129 (277)
281 PRK07877 hypothetical protein; 50.9 12 0.00025 42.8 2.8 117 68-191 107-228 (722)
282 PRK06153 hypothetical protein; 50.9 12 0.00025 40.0 2.6 102 69-175 177-283 (393)
283 PRK09496 trkA potassium transp 50.7 21 0.00046 36.8 4.5 32 68-102 231-262 (453)
284 cd01489 Uba2_SUMO Ubiquitin ac 50.6 21 0.00046 36.8 4.4 98 70-176 1-108 (312)
285 PRK05597 molybdopterin biosynt 50.6 13 0.00028 38.5 2.9 110 68-184 28-145 (355)
286 PLN02427 UDP-apiose/xylose syn 50.4 27 0.00059 35.4 5.1 33 68-102 14-47 (386)
287 PRK15057 UDP-glucose 6-dehydro 50.3 19 0.00042 37.8 4.1 40 69-114 1-40 (388)
288 TIGR01087 murD UDP-N-acetylmur 50.3 72 0.0016 33.1 8.3 30 70-103 1-30 (433)
289 PLN02178 cinnamyl-alcohol dehy 50.1 53 0.0012 33.7 7.2 31 69-102 180-210 (375)
290 COG0345 ProC Pyrroline-5-carbo 50.0 23 0.00051 35.8 4.5 35 69-103 2-37 (266)
291 PRK12921 2-dehydropantoate 2-r 50.0 22 0.00047 34.7 4.2 30 69-101 1-30 (305)
292 PRK07201 short chain dehydroge 50.0 1.1E+02 0.0023 33.3 9.8 33 69-102 1-34 (657)
293 PRK03806 murD UDP-N-acetylmura 49.6 1E+02 0.0022 32.1 9.3 86 70-189 8-94 (438)
294 PRK00421 murC UDP-N-acetylmura 49.4 71 0.0015 33.7 8.2 31 69-103 8-39 (461)
295 PRK14106 murD UDP-N-acetylmura 49.2 57 0.0012 33.9 7.3 88 69-183 6-93 (450)
296 cd08235 iditol_2_DH_like L-idi 49.2 1.1E+02 0.0023 30.0 8.9 30 69-101 167-197 (343)
297 cd08296 CAD_like Cinnamyl alco 48.9 61 0.0013 31.9 7.2 93 70-188 166-258 (333)
298 COG0702 Predicted nucleoside-d 48.7 24 0.00053 32.9 4.2 32 69-103 1-33 (275)
299 KOG1203 Predicted dehydrogenas 48.5 32 0.0007 37.0 5.4 30 68-100 79-109 (411)
300 PRK11154 fadJ multifunctional 48.5 19 0.0004 40.8 3.9 31 69-101 310-340 (708)
301 PRK02318 mannitol-1-phosphate 48.1 22 0.00047 37.0 4.1 31 69-101 1-31 (381)
302 cd08277 liver_alcohol_DH_like 48.0 74 0.0016 32.0 7.7 30 69-101 186-216 (365)
303 PRK06988 putative formyltransf 47.7 24 0.00052 36.0 4.2 32 67-101 1-32 (312)
304 cd08254 hydroxyacyl_CoA_DH 6-h 47.6 1.3E+02 0.0028 29.0 9.1 95 70-188 168-262 (338)
305 TIGR00518 alaDH alanine dehydr 47.6 26 0.00056 36.5 4.5 31 69-102 168-198 (370)
306 PRK04308 murD UDP-N-acetylmura 47.4 82 0.0018 33.0 8.2 29 69-100 6-34 (445)
307 cd08294 leukotriene_B4_DH_like 47.2 83 0.0018 30.4 7.7 31 69-102 145-176 (329)
308 PRK08293 3-hydroxybutyryl-CoA 46.8 29 0.00063 34.3 4.6 30 69-101 4-33 (287)
309 cd08292 ETR_like_2 2-enoyl thi 46.8 37 0.0008 32.7 5.2 32 69-103 141-173 (324)
310 PRK07066 3-hydroxybutyryl-CoA 46.8 28 0.0006 35.9 4.6 29 70-101 9-37 (321)
311 PRK00141 murD UDP-N-acetylmura 46.7 1E+02 0.0022 33.0 8.9 29 70-102 17-45 (473)
312 PRK00683 murD UDP-N-acetylmura 46.4 25 0.00055 36.6 4.3 30 70-102 5-34 (418)
313 cd08245 CAD Cinnamyl alcohol d 46.1 87 0.0019 30.4 7.7 32 69-103 164-195 (330)
314 TIGR02440 FadJ fatty oxidation 45.8 18 0.00038 40.9 3.2 29 69-99 305-333 (699)
315 PRK04690 murD UDP-N-acetylmura 45.2 53 0.0012 35.0 6.5 31 69-103 9-39 (468)
316 PTZ00142 6-phosphogluconate de 45.0 25 0.00054 38.1 4.0 31 69-102 2-32 (470)
317 cd05188 MDR Medium chain reduc 44.8 1.3E+02 0.0028 27.6 8.2 31 69-102 136-166 (271)
318 PRK02472 murD UDP-N-acetylmura 44.6 84 0.0018 32.7 7.7 29 70-102 7-35 (447)
319 PLN02896 cinnamyl-alcohol dehy 44.1 39 0.00084 33.8 5.0 32 68-102 10-42 (353)
320 PLN00141 Tic62-NAD(P)-related 44.1 34 0.00073 32.5 4.4 31 69-102 18-49 (251)
321 PRK10675 UDP-galactose-4-epime 43.3 35 0.00076 33.4 4.5 31 69-102 1-32 (338)
322 PLN02695 GDP-D-mannose-3',5'-e 43.1 34 0.00074 35.0 4.5 31 68-101 21-52 (370)
323 PLN02572 UDP-sulfoquinovose sy 42.7 49 0.0011 35.0 5.8 30 69-101 48-78 (442)
324 PRK10309 galactitol-1-phosphat 42.5 32 0.0007 34.0 4.2 30 69-101 162-192 (347)
325 cd08232 idonate-5-DH L-idonate 42.4 1.5E+02 0.0033 28.9 8.8 30 69-101 167-197 (339)
326 cd01065 NAD_bind_Shikimate_DH 42.3 44 0.00096 29.1 4.6 31 69-101 20-50 (155)
327 cd01485 E1-1_like Ubiquitin ac 41.9 26 0.00056 33.3 3.2 24 68-91 19-42 (198)
328 PLN02260 probable rhamnose bio 41.9 37 0.0008 37.5 4.9 40 66-108 378-419 (668)
329 TIGR00873 gnd 6-phosphoglucona 41.7 28 0.0006 37.7 3.8 30 70-102 1-30 (467)
330 PLN02166 dTDP-glucose 4,6-dehy 41.5 36 0.00077 36.1 4.5 32 68-102 120-152 (436)
331 PRK11908 NAD-dependent epimera 41.4 40 0.00087 33.5 4.6 32 69-102 2-34 (347)
332 smart00833 CobW_C Cobalamin sy 41.2 50 0.0011 26.5 4.4 50 349-398 2-55 (92)
333 TIGR01470 cysG_Nterm siroheme 40.8 1.8E+02 0.0039 27.8 8.8 30 70-102 11-40 (205)
334 TIGR01381 E1_like_apg7 E1-like 40.7 16 0.00035 41.4 1.9 120 68-190 338-479 (664)
335 cd08262 Zn_ADH8 Alcohol dehydr 40.6 1.7E+02 0.0038 28.5 8.9 31 69-102 163-193 (341)
336 PRK15182 Vi polysaccharide bio 40.4 33 0.00072 36.5 4.1 30 69-102 7-36 (425)
337 COG1179 Dinucleotide-utilizing 40.2 39 0.00084 34.4 4.2 124 69-199 31-163 (263)
338 cd08278 benzyl_alcohol_DH Benz 40.2 75 0.0016 32.0 6.4 94 69-186 188-282 (365)
339 cd08263 Zn_ADH10 Alcohol dehyd 40.1 1.6E+02 0.0034 29.5 8.6 30 70-102 190-220 (367)
340 PRK05600 thiamine biosynthesis 40.0 18 0.00039 37.8 2.0 111 68-184 41-158 (370)
341 PRK05442 malate dehydrogenase; 39.9 47 0.001 34.2 5.0 22 68-89 4-26 (326)
342 PRK08223 hypothetical protein; 39.6 26 0.00056 35.9 3.0 98 68-169 27-128 (287)
343 COG1023 Gnd Predicted 6-phosph 39.5 29 0.00063 35.5 3.3 43 69-116 1-43 (300)
344 cd05191 NAD_bind_amino_acid_DH 39.4 52 0.0011 26.7 4.3 22 69-90 24-45 (86)
345 PF00070 Pyr_redox: Pyridine n 39.3 63 0.0014 25.6 4.6 29 70-101 1-29 (80)
346 cd05291 HicDH_like L-2-hydroxy 39.2 46 0.001 33.4 4.7 31 70-101 2-32 (306)
347 cd08285 NADP_ADH NADP(H)-depen 39.1 36 0.00079 33.7 3.9 30 69-101 168-198 (351)
348 cd04885 ACT_ThrD-I Tandem C-te 39.0 1.6E+02 0.0035 22.8 6.8 58 312-370 4-61 (68)
349 cd05292 LDH_2 A subgroup of L- 38.9 45 0.00097 33.7 4.6 23 69-91 1-23 (308)
350 cd08270 MDR4 Medium chain dehy 38.7 3.2E+02 0.0069 26.0 10.1 87 69-188 134-221 (305)
351 TIGR02818 adh_III_F_hyde S-(hy 38.4 67 0.0015 32.5 5.8 30 69-101 187-217 (368)
352 cd08300 alcohol_DH_class_III c 38.3 1.5E+02 0.0033 29.8 8.3 30 69-101 188-218 (368)
353 COG0686 Ald Alanine dehydrogen 38.3 16 0.00035 38.4 1.4 46 69-116 169-214 (371)
354 PRK14851 hypothetical protein; 38.3 16 0.00034 41.5 1.4 99 68-170 43-145 (679)
355 cd04886 ACT_ThrD-II-like C-ter 38.2 1.4E+02 0.0031 21.9 6.2 58 313-370 5-66 (73)
356 PLN02350 phosphogluconate dehy 38.2 35 0.00075 37.4 3.9 153 69-235 7-193 (493)
357 TIGR00561 pntA NAD(P) transhyd 38.0 77 0.0017 35.0 6.5 23 69-91 165-187 (511)
358 KOG0024 Sorbitol dehydrogenase 37.9 47 0.001 35.1 4.6 110 61-190 163-273 (354)
359 cd08290 ETR 2-enoyl thioester 37.7 85 0.0019 30.6 6.2 31 70-103 149-180 (341)
360 PLN02206 UDP-glucuronate decar 37.6 42 0.0009 35.7 4.3 32 68-102 119-151 (442)
361 PRK00066 ldh L-lactate dehydro 37.5 55 0.0012 33.4 5.0 23 69-91 7-29 (315)
362 PF00899 ThiF: ThiF family; I 37.5 37 0.0008 29.6 3.3 102 69-176 3-110 (135)
363 PF02558 ApbA: Ketopantoate re 37.4 56 0.0012 28.5 4.4 29 71-102 1-29 (151)
364 cd08295 double_bond_reductase_ 37.4 1.4E+02 0.003 29.5 7.7 30 70-102 154-184 (338)
365 PF00107 ADH_zinc_N: Zinc-bind 37.4 11 0.00024 31.7 -0.0 36 157-192 57-92 (130)
366 TIGR01214 rmlD dTDP-4-dehydror 37.3 45 0.00097 31.8 4.1 29 70-101 1-30 (287)
367 cd08238 sorbose_phosphate_red 37.2 1.7E+02 0.0036 30.3 8.5 34 157-190 256-289 (410)
368 cd05281 TDH Threonine dehydrog 37.2 54 0.0012 32.3 4.8 28 70-100 166-194 (341)
369 PRK07411 hypothetical protein; 37.0 25 0.00055 36.9 2.5 24 68-91 38-61 (390)
370 cd08258 Zn_ADH4 Alcohol dehydr 36.9 3.2E+02 0.007 26.7 10.1 138 70-234 167-305 (306)
371 PRK04663 murD UDP-N-acetylmura 36.7 2.1E+02 0.0046 30.0 9.3 33 69-103 8-40 (438)
372 cd08289 MDR_yhfp_like Yhfp put 36.6 1.3E+02 0.0027 29.1 7.1 93 70-188 149-242 (326)
373 cd08260 Zn_ADH6 Alcohol dehydr 36.6 80 0.0017 31.0 5.9 30 70-102 168-197 (345)
374 cd01492 Aos1_SUMO Ubiquitin ac 36.5 47 0.001 31.5 4.1 24 68-91 21-44 (197)
375 cd05288 PGDH Prostaglandin deh 36.5 1.4E+02 0.0031 28.8 7.5 31 69-102 147-178 (329)
376 TIGR01757 Malate-DH_plant mala 36.5 58 0.0013 34.6 5.1 24 68-91 44-68 (387)
377 TIGR03466 HpnA hopanoid-associ 36.4 48 0.001 31.9 4.2 30 70-102 2-32 (328)
378 PRK15181 Vi polysaccharide bio 36.4 52 0.0011 33.0 4.6 31 69-102 16-47 (348)
379 PRK14192 bifunctional 5,10-met 36.1 1.2E+02 0.0025 30.8 7.0 23 69-91 160-183 (283)
380 PLN02240 UDP-glucose 4-epimera 36.1 53 0.0011 32.4 4.5 31 69-102 6-37 (352)
381 PF01370 Epimerase: NAD depend 35.9 76 0.0017 28.9 5.2 30 71-103 1-31 (236)
382 cd05280 MDR_yhdh_yhfp Yhdh and 35.7 1.6E+02 0.0034 28.2 7.6 30 70-102 149-179 (325)
383 PRK09291 short chain dehydroge 35.6 61 0.0013 30.1 4.7 31 69-102 3-34 (257)
384 PLN03154 putative allyl alcoho 35.4 1.4E+02 0.003 30.1 7.5 30 69-101 160-190 (348)
385 PLN02827 Alcohol dehydrogenase 35.4 1.7E+02 0.0036 30.0 8.1 29 69-100 195-224 (378)
386 TIGR00507 aroE shikimate 5-deh 35.1 1.4E+02 0.0031 29.3 7.3 31 69-102 118-148 (270)
387 PF01073 3Beta_HSD: 3-beta hyd 35.0 82 0.0018 31.3 5.7 25 73-98 2-27 (280)
388 cd08236 sugar_DH NAD(P)-depend 34.8 56 0.0012 32.0 4.5 31 69-102 161-192 (343)
389 PRK02705 murD UDP-N-acetylmura 34.8 81 0.0017 33.0 5.8 29 70-102 2-30 (459)
390 cd08287 FDH_like_ADH3 formalde 34.6 47 0.001 32.6 3.9 29 70-101 171-200 (345)
391 PRK09987 dTDP-4-dehydrorhamnos 34.4 61 0.0013 31.9 4.6 29 69-101 1-30 (299)
392 PRK10754 quinone oxidoreductas 34.2 42 0.00091 32.6 3.4 31 69-102 142-173 (327)
393 TIGR01181 dTDP_gluc_dehyt dTDP 34.2 54 0.0012 31.2 4.1 31 70-101 1-32 (317)
394 PRK10083 putative oxidoreducta 34.0 1.2E+02 0.0027 29.5 6.7 20 70-89 163-182 (339)
395 PRK07878 molybdopterin biosynt 34.0 30 0.00065 36.3 2.5 24 68-91 42-65 (392)
396 TIGR01408 Ube1 ubiquitin-activ 34.0 54 0.0012 39.0 4.8 160 68-237 419-608 (1008)
397 cd05284 arabinose_DH_like D-ar 34.0 55 0.0012 31.9 4.2 32 69-102 169-200 (340)
398 COG1062 AdhC Zn-dependent alco 33.8 93 0.002 33.2 6.0 90 69-181 187-277 (366)
399 COG0362 Gnd 6-phosphogluconate 33.7 3.2E+02 0.007 30.0 10.0 135 67-209 2-151 (473)
400 PRK08017 oxidoreductase; Provi 33.0 73 0.0016 29.6 4.7 30 70-102 4-34 (256)
401 PRK07326 short chain dehydroge 32.9 68 0.0015 29.4 4.5 30 69-101 7-37 (237)
402 cd01336 MDH_cytoplasmic_cytoso 32.9 67 0.0015 32.9 4.8 34 68-101 2-40 (325)
403 TIGR02819 fdhA_non_GSH formald 32.9 2E+02 0.0044 29.8 8.4 31 70-103 188-218 (393)
404 PRK12771 putative glutamate sy 32.8 22 0.00047 38.6 1.3 30 69-101 138-167 (564)
405 TIGR02825 B4_12hDH leukotriene 32.7 1.5E+02 0.0033 29.0 7.0 31 69-102 140-171 (325)
406 cd08293 PTGR2 Prostaglandin re 32.7 91 0.002 30.6 5.5 31 69-102 156-188 (345)
407 cd08234 threonine_DH_like L-th 32.6 1.1E+02 0.0023 29.8 6.0 30 70-102 162-192 (334)
408 PF07991 IlvN: Acetohydroxy ac 32.4 61 0.0013 30.9 4.0 31 69-102 5-35 (165)
409 PRK06046 alanine dehydrogenase 32.4 65 0.0014 32.8 4.6 34 68-103 129-162 (326)
410 cd08279 Zn_ADH_class_III Class 32.1 66 0.0014 32.2 4.5 30 70-102 185-215 (363)
411 PLN02702 L-idonate 5-dehydroge 31.9 87 0.0019 31.3 5.3 23 69-91 183-205 (364)
412 TIGR02279 PaaC-3OHAcCoADH 3-hy 31.9 61 0.0013 35.4 4.5 31 69-102 6-36 (503)
413 PRK05678 succinyl-CoA syntheta 31.8 1.4E+02 0.003 30.6 6.8 88 68-189 8-96 (291)
414 PRK04965 NADH:flavorubredoxin 31.7 1.1E+02 0.0023 31.1 6.0 35 67-102 1-35 (377)
415 PRK14620 NAD(P)H-dependent gly 31.4 69 0.0015 32.0 4.5 23 69-91 1-23 (326)
416 PRK08268 3-hydroxy-acyl-CoA de 31.3 63 0.0014 35.2 4.5 30 70-102 9-38 (507)
417 PLN02353 probable UDP-glucose 31.1 71 0.0015 34.7 4.8 32 69-101 2-33 (473)
418 TIGR01763 MalateDH_bact malate 30.9 71 0.0015 32.4 4.5 141 69-237 2-160 (305)
419 KOG1399 Flavin-containing mono 30.5 49 0.0011 35.8 3.4 25 67-91 5-29 (448)
420 PF07683 CobW_C: Cobalamin syn 30.4 66 0.0014 26.0 3.5 50 349-398 2-54 (94)
421 TIGR03570 NeuD_NnaD sugar O-ac 30.1 84 0.0018 28.1 4.5 31 70-103 1-31 (201)
422 TIGR02717 AcCoA-syn-alpha acet 30.1 1.2E+02 0.0026 32.4 6.3 33 69-102 8-44 (447)
423 PRK03815 murD UDP-N-acetylmura 30.0 63 0.0014 34.0 4.1 29 69-102 1-29 (401)
424 PLN00198 anthocyanidin reducta 29.6 77 0.0017 31.3 4.5 31 68-101 9-40 (338)
425 cd08265 Zn_ADH3 Alcohol dehydr 29.5 84 0.0018 32.0 4.8 29 70-101 206-235 (384)
426 cd08244 MDR_enoyl_red Possible 29.5 72 0.0016 30.6 4.1 31 69-102 144-175 (324)
427 COG1893 ApbA Ketopantoate redu 29.1 71 0.0015 32.6 4.2 23 69-91 1-23 (307)
428 PRK05225 ketol-acid reductoiso 28.8 40 0.00086 37.1 2.4 13 69-81 37-49 (487)
429 PRK10538 malonic semialdehyde 28.4 91 0.002 29.2 4.5 30 69-101 1-31 (248)
430 cd08248 RTN4I1 Human Reticulon 28.4 2.5E+02 0.0054 27.4 7.7 31 69-102 164-195 (350)
431 PF00289 CPSase_L_chain: Carba 28.4 71 0.0015 27.9 3.5 31 69-102 3-33 (110)
432 COG0373 HemA Glutamyl-tRNA red 28.1 2.9E+02 0.0062 30.0 8.6 33 69-103 179-211 (414)
433 TIGR01777 yfcH conserved hypot 28.1 67 0.0015 30.4 3.6 29 71-102 1-30 (292)
434 PRK05086 malate dehydrogenase; 28.0 94 0.002 31.7 4.8 21 69-89 1-22 (312)
435 TIGR01179 galE UDP-glucose-4-e 27.8 82 0.0018 30.1 4.2 29 70-101 1-30 (328)
436 cd00650 LDH_MDH_like NAD-depen 27.8 53 0.0011 32.1 2.9 21 71-91 1-22 (263)
437 PRK05653 fabG 3-ketoacyl-(acyl 27.8 1E+02 0.0022 28.1 4.6 31 69-102 6-37 (246)
438 KOG2380 Prephenate dehydrogena 27.6 73 0.0016 34.3 4.0 26 66-91 50-75 (480)
439 PRK06719 precorrin-2 dehydroge 27.5 98 0.0021 28.4 4.5 30 69-101 14-43 (157)
440 PRK12320 hypothetical protein; 27.3 80 0.0017 36.2 4.6 31 69-102 1-32 (699)
441 PRK06924 short chain dehydroge 27.1 97 0.0021 28.8 4.5 29 70-101 3-32 (251)
442 PRK10537 voltage-gated potassi 27.0 80 0.0017 33.5 4.3 31 68-101 240-270 (393)
443 cd05279 Zn_ADH1 Liver alcohol 27.0 1.9E+02 0.0042 29.1 6.9 22 70-91 186-207 (365)
444 cd08243 quinone_oxidoreductase 26.9 1.9E+02 0.0042 27.4 6.5 31 70-103 145-176 (320)
445 cd08246 crotonyl_coA_red croto 26.9 3E+02 0.0064 27.9 8.2 30 69-101 195-225 (393)
446 PRK08267 short chain dehydroge 26.7 1E+02 0.0023 28.9 4.6 29 70-101 3-32 (260)
447 PRK06019 phosphoribosylaminoim 26.4 96 0.0021 31.9 4.7 31 69-102 3-33 (372)
448 cd08261 Zn_ADH7 Alcohol dehydr 26.4 82 0.0018 30.9 4.0 30 70-102 162-191 (337)
449 cd08259 Zn_ADH5 Alcohol dehydr 26.1 2.2E+02 0.0047 27.3 6.8 31 69-102 164-195 (332)
450 PLN02583 cinnamoyl-CoA reducta 26.0 98 0.0021 30.3 4.5 30 70-102 8-38 (297)
451 PRK07023 short chain dehydroge 26.0 97 0.0021 28.8 4.2 30 69-101 2-32 (243)
452 PRK12745 3-ketoacyl-(acyl-carr 25.9 1.1E+02 0.0024 28.5 4.6 31 69-102 3-34 (256)
453 TIGR01759 MalateDH-SF1 malate 25.8 1.1E+02 0.0024 31.5 4.9 25 67-91 2-27 (323)
454 PLN02858 fructose-bisphosphate 25.7 83 0.0018 38.7 4.6 33 67-102 323-355 (1378)
455 cd05286 QOR2 Quinone oxidoredu 25.4 1E+02 0.0022 28.8 4.3 30 70-102 139-169 (320)
456 cd05282 ETR_like 2-enoyl thioe 25.2 93 0.002 29.8 4.0 32 69-103 140-172 (323)
457 PRK10217 dTDP-glucose 4,6-dehy 24.9 93 0.002 30.8 4.1 31 69-102 2-33 (355)
458 PTZ00325 malate dehydrogenase; 24.8 1.2E+02 0.0026 31.3 5.0 76 157-237 75-170 (321)
459 cd08240 6_hydroxyhexanoate_dh_ 24.7 3.6E+02 0.0077 26.6 8.1 22 70-91 178-199 (350)
460 cd01337 MDH_glyoxysomal_mitoch 24.7 1.1E+02 0.0025 31.3 4.8 23 69-91 1-24 (310)
461 PRK12827 short chain dehydroge 24.5 1.2E+02 0.0025 27.9 4.4 30 69-101 7-37 (249)
462 TIGR01751 crot-CoA-red crotony 24.5 3.7E+02 0.0079 27.5 8.4 30 69-101 191-221 (398)
463 TIGR01472 gmd GDP-mannose 4,6- 24.4 1E+02 0.0022 30.6 4.3 30 70-102 2-32 (343)
464 PRK05586 biotin carboxylase; V 24.2 96 0.0021 32.7 4.2 31 69-102 3-33 (447)
465 PRK12826 3-ketoacyl-(acyl-carr 24.1 1.1E+02 0.0024 28.1 4.2 31 69-102 7-38 (251)
466 cd05285 sorbitol_DH Sorbitol d 23.8 3E+02 0.0065 27.1 7.4 30 69-101 164-194 (343)
467 PRK12409 D-amino acid dehydrog 23.7 1.1E+02 0.0024 31.2 4.5 28 70-100 3-30 (410)
468 PRK06947 glucose-1-dehydrogena 23.7 1.2E+02 0.0026 28.1 4.4 31 67-100 1-32 (248)
469 PRK08219 short chain dehydroge 23.6 1.1E+02 0.0024 27.6 4.1 30 69-102 4-34 (227)
470 PRK08125 bifunctional UDP-gluc 23.5 1.1E+02 0.0023 34.2 4.6 32 69-102 316-348 (660)
471 PRK00258 aroE shikimate 5-dehy 23.5 1.2E+02 0.0026 30.0 4.6 32 69-102 124-155 (278)
472 PRK07231 fabG 3-ketoacyl-(acyl 23.3 1.2E+02 0.0027 27.9 4.4 30 70-102 7-37 (251)
473 KOG2250 Glutamate/leucine/phen 23.3 4.3E+02 0.0093 29.6 8.9 31 69-102 252-282 (514)
474 cd08273 MDR8 Medium chain dehy 23.1 3.8E+02 0.0082 25.8 7.8 31 69-102 141-172 (331)
475 cd01080 NAD_bind_m-THF_DH_Cycl 23.0 1.8E+02 0.0039 27.2 5.4 32 69-103 45-77 (168)
476 PLN02650 dihydroflavonol-4-red 22.9 1.1E+02 0.0024 30.5 4.2 30 69-101 6-36 (351)
477 PF02192 PI3K_p85B: PI3-kinase 22.9 1.4E+02 0.0031 25.0 4.2 35 351-385 2-37 (78)
478 TIGR00715 precor6x_red precorr 22.7 83 0.0018 31.4 3.3 29 69-101 1-30 (256)
479 PRK07577 short chain dehydroge 22.5 1.3E+02 0.0028 27.5 4.3 29 70-101 5-34 (234)
480 COG1086 Predicted nucleoside-d 22.5 2.1E+02 0.0046 32.4 6.5 117 70-204 252-389 (588)
481 KOG0022 Alcohol dehydrogenase, 22.5 1.8E+02 0.004 31.0 5.7 31 69-101 194-224 (375)
482 PRK08163 salicylate hydroxylas 22.3 1.2E+02 0.0026 30.6 4.4 31 67-100 3-33 (396)
483 TIGR02822 adh_fam_2 zinc-bindi 22.3 4.1E+02 0.0089 26.5 8.1 30 69-101 167-196 (329)
484 PRK11150 rfaD ADP-L-glycero-D- 22.3 1.1E+02 0.0025 29.6 4.1 29 71-102 2-31 (308)
485 TIGR01772 MDH_euk_gproteo mala 22.2 1.3E+02 0.0028 31.0 4.6 22 70-91 1-23 (312)
486 cd08291 ETR_like_1 2-enoyl thi 22.1 97 0.0021 30.3 3.6 30 70-102 145-176 (324)
487 PRK05884 short chain dehydroge 22.1 1.3E+02 0.0029 28.0 4.4 29 70-101 2-31 (223)
488 PF01232 Mannitol_dh: Mannitol 21.9 1.5E+02 0.0032 26.9 4.5 48 69-117 1-51 (151)
489 PRK07236 hypothetical protein; 21.8 1.3E+02 0.0028 30.5 4.5 32 67-101 5-36 (386)
490 cd08249 enoyl_reductase_like e 21.7 2.6E+02 0.0057 27.6 6.6 95 69-188 156-253 (339)
491 COG0677 WecC UDP-N-acetyl-D-ma 21.4 1E+02 0.0022 33.6 3.7 33 66-101 7-39 (436)
492 PF12953 DUF3842: Domain of un 20.9 6.5E+02 0.014 23.4 8.3 106 73-208 5-119 (131)
493 PRK05565 fabG 3-ketoacyl-(acyl 20.6 1.6E+02 0.0034 27.0 4.5 29 69-100 6-35 (247)
494 COG5495 Uncharacterized conser 20.4 70 0.0015 32.7 2.2 52 68-127 10-62 (289)
495 PRK14179 bifunctional 5,10-met 20.3 3.6E+02 0.0077 27.7 7.3 22 69-90 159-181 (284)
496 PRK07178 pyruvate carboxylase 20.3 1.4E+02 0.0031 31.9 4.6 31 69-102 3-33 (472)
497 PRK07454 short chain dehydroge 20.2 1.8E+02 0.004 26.8 4.9 30 70-102 8-38 (241)
498 cd01078 NAD_bind_H4MPT_DH NADP 20.2 1.6E+02 0.0036 27.1 4.5 31 69-102 29-60 (194)
499 cd08286 FDH_like_ADH2 formalde 20.1 1E+02 0.0023 30.2 3.3 31 69-101 168-198 (345)
500 PRK10084 dTDP-glucose 4,6 dehy 20.1 1.4E+02 0.003 29.6 4.2 23 69-91 1-24 (352)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=2.4e-126 Score=978.52 Aligned_cols=384 Identities=76% Similarity=1.166 Sum_probs=367.3
Q ss_pred CcccccccccccCCCCcccCC-CCcchhhhhhhhcccCCCccccccccccCceeEEEEcCChhHHHHHHHHHhCCCCCcE
Q 013492 18 KGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLE 96 (442)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGr~~lr~l~~~~~~~~e 96 (442)
-.|+||+|||+++++++++.. +.+|+..++.|+.++.++ ..+.+..++|++||||||||||||.++|+|++++++++|
T Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ie 103 (442)
T PLN02237 25 LEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 103 (442)
T ss_pred ccccccccccccccccccccccchhHHHHhhhhhhhhhcc-cccccccccceEEEEEECCChHHHHHHHHHHHccCCCeE
Confidence 469999999999999988765 778999999999988777 777888999999999999999999999998876435699
Q ss_pred EEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCCCCCCCCCccccEEEcCCCCCCCHhhHH
Q 013492 97 VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176 (442)
Q Consensus 97 vvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~ 176 (442)
||+|||+.++++++|||||||+||+|+++|+..+++.|.|+|+.|.++++++|.++||+++|+||||||||.|+++++++
T Consensus 104 vVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~ 183 (442)
T PLN02237 104 VVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 183 (442)
T ss_pred EEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhhHHHHH
Confidence 99999999999999999999999999999983378899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEeCCCCC-CCCceeeccCccCCCCC-CCeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhh
Q 013492 177 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDI 254 (442)
Q Consensus 177 ~hl~aGAkkVIIsapsk~-d~pt~V~gVN~~~y~~~-~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~ 254 (442)
+|+++|||||+||+|.++ ++||||||||++.|++. ++||||||||||||+|++|+||++||
T Consensus 184 ~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcLAPvlkvL~d~fG----------------- 246 (442)
T PLN02237 184 KHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFG----------------- 246 (442)
T ss_pred HHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHHHHHHHHHHHHhcC-----------------
Confidence 999999999999999987 68999999999999876 78999999999999999999999999
Q ss_pred hhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhhccccceecCCCchhHHHHHhccccCCce
Q 013492 255 IQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKL 334 (442)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~raaa~NIIPtstGaakav~kVlPeL~gkl 334 (442)
|++|+|||||+||++|+++|.+|+||||+|++++||||++||+||++++|||+|+|||
T Consensus 247 ----------------------I~~g~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl 304 (442)
T PLN02237 247 ----------------------IVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKL 304 (442)
T ss_pred ----------------------eeEEEEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhceecccCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCcCcceeEEEEEEEcc-CCCHHHHHHHHHhcccccCCCceeeccCCeeeeccCCCCcceEEeCCCCccccCCe
Q 013492 335 NGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 413 (442)
Q Consensus 335 ~g~avRVPt~~vs~vdl~v~l~k-~~~~eeV~~a~~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~~~d~~~t~~~~~~~ 413 (442)
+|+++||||++||++||+++++| ++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++|++|
T Consensus 305 ~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~ 384 (442)
T PLN02237 305 NGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDM 384 (442)
T ss_pred eeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCE
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 414 VKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 414 vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
+|+++|||||||||+||+||+.+|+++|
T Consensus 385 vKv~aWYDNEwGys~R~~dl~~~~~~~~ 412 (442)
T PLN02237 385 VKVVAWYDNEWGYSQRVVDLAHLVAAKW 412 (442)
T ss_pred EEEEEEeCCchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998864
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=5e-123 Score=945.74 Aligned_cols=394 Identities=86% Similarity=1.314 Sum_probs=373.5
Q ss_pred ccccccccccCCCcccccccccccCCCCcccCC-CCcchhhhhhhhcccCCCccccccccccCceeEEEEcCChhHHHHH
Q 013492 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFL 84 (442)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGr~~l 84 (442)
++++++++++.+++|++|+|||++++.++++.. +++| +++|+.++.++ ..+.+..++|++||||||||||||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~kVaInGfGrIGR~vl 76 (395)
T PLN03096 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAVSSS-GGARRAVTEAKIKVAINGFGRIGRNFL 76 (395)
T ss_pred CCccchhhhcccCcccccccccccCcccccccccchhh---hhhhhhhhhcc-ccccccccccccEEEEECcCHHHHHHH
Confidence 367889999999999999999998888886544 4445 67777777665 677888899999999999999999999
Q ss_pred HHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCCCCCCCCCccccEEEc
Q 013492 85 RCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIE 164 (442)
Q Consensus 85 r~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p~~l~W~~~gvDiVie 164 (442)
|+|++++++.+||+||||+.++++++|||+|||+||+|+++++..+++.|.|+|+.|.+++++||.++||+++|+|+|||
T Consensus 77 r~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie 156 (395)
T PLN03096 77 RCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIE 156 (395)
T ss_pred HHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEE
Confidence 99998865679999999999999999999999999999999984578899999999999999999999999999999999
Q ss_pred CCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhhHHHHHHHHHhhccchhhhc
Q 013492 165 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQ 244 (442)
Q Consensus 165 ~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~ 244 (442)
|||.|.++++|++|+++|||||+||+|.++++||+|+|||++.|++.++||||||||||||+|++|+||++||
T Consensus 157 ~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp~lkvL~~~fG------- 229 (395)
T PLN03096 157 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFG------- 229 (395)
T ss_pred CcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHHHHHHHHHhcC-------
Confidence 9999999999999999999999999998888899999999999987788999999999999999999999999
Q ss_pred ccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhhccccceecCCCchhHHHH
Q 013492 245 KSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 324 (442)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~raaa~NIIPtstGaakav~ 324 (442)
|++|+|||||+||++|+++|.+|+|+||+|++++||||++||++|+++
T Consensus 230 --------------------------------I~~g~mTTiHa~T~~Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~ 277 (395)
T PLN03096 230 --------------------------------IIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 277 (395)
T ss_pred --------------------------------eeEEEEEEEEccccccccccCCCCccccchhhhccccccCCCcchhhh
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCCeeeeccCCCCcceEEeCC
Q 013492 325 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 404 (442)
Q Consensus 325 kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~~VS~Df~~~~~S~~~d~~ 404 (442)
+|||+|+||++|+|+||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.
T Consensus 278 kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~ 357 (395)
T PLN03096 278 LVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSS 357 (395)
T ss_pred hcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhcCC
Q 013492 405 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 442 (442)
Q Consensus 405 ~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~~ 442 (442)
+|++++++|+|+++|||||||||+||+||+.+|+++|+
T Consensus 358 ~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~~~ 395 (395)
T PLN03096 358 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKWK 395 (395)
T ss_pred cCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999988764
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-122 Score=928.57 Aligned_cols=335 Identities=47% Similarity=0.789 Sum_probs=320.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC--CCCcEEEEEec-CCChhhhhhhcccCcccccCCcceeee--------cCCcEE
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPV--------GTDGIS 135 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~--~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~--------~~~~i~ 135 (442)
|++||||||||||||.++|++.++. .+++||||||| .+++++++|||||||+||+|+++|+ . +++.|.
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~-~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVE-TTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCcee-ecccccccccCCEEE
Confidence 6689999999999999999988752 24699999999 6899999999999999999999998 5 788999
Q ss_pred ECCEEEEEE-ecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCC-CCC
Q 013492 136 VDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEP 213 (442)
Q Consensus 136 v~Gk~I~v~-~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~-~~~ 213 (442)
|||+.|.++ +++||.++||+++|+||||||||.|.+++.++.|+++||||||||||++++.||||+||||+.|++ .++
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCc
Confidence 999999996 999999999999999999999999999999999999999999999999875689999999999998 578
Q ss_pred eEecCCchhhhhHHHHHHH-HHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccch
Q 013492 214 IISNASCTTNCLAPFVKVL-DQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ 292 (442)
Q Consensus 214 IISnaSCTTn~Lap~lkvL-~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q 292 (442)
||||||||||||||++|+| |++|| |++|+|||+|+||++|
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fG---------------------------------------I~~g~mTTVHayT~~Q 201 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFG---------------------------------------IETGLMTTIHSYTATQ 201 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcc---------------------------------------eEEEEEEEEecccCCc
Confidence 9999999999999999999 79999 9999999999999999
Q ss_pred hhhccc-hhhhhhhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhc
Q 013492 293 RLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 371 (442)
Q Consensus 293 ~~lD~~-h~d~rr~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~a 371 (442)
+++|.+ |+||||+|+|++||||++||+||++++|||+|+|||+|+|+||||+|||++||+++++|++++||||++|+++
T Consensus 202 ~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~a 281 (361)
T PTZ00434 202 KTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRA 281 (361)
T ss_pred ccccCcCcccccccccccccCccCCcchhhhhceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHh
Confidence 999977 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeccCCeeeeccCCCCcceEEeCCCCcccc----CCeEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 372 ADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 372 a~~~lkgil~~~~~~~VS~Df~~~~~S~~~d~~~t~~~~----~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
++++|||||+|+|+|+||+||+|++||+|||+.+|++++ ++|+|+++||||||||||||+||+.+|.+.+
T Consensus 282 a~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~ 355 (361)
T PTZ00434 282 SQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355 (361)
T ss_pred hhccccCcccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999996 4899999999999999999999999998754
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2e-115 Score=875.53 Aligned_cols=333 Identities=73% Similarity=1.150 Sum_probs=322.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+||||||||||||.++|++++++++++|||||||+.++++++|||||||+||+|+++++ .+++.|.|||+.|.+++++|
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS-ADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEE-EcCCEEEECCEEEEEEEcCC
Confidence 79999999999999999988764346999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCC-CCCceeeccCccCCCC-CCCeEecCCchhhhhH
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTNCLA 226 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~-d~pt~V~gVN~~~y~~-~~~IISnaSCTTn~La 226 (442)
|.++||+++|+|+||||||.|+++++++.|+++|||||++|+|+++ |+||+|+|||++.|++ .++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 5699999999999986 4789999999999999
Q ss_pred HHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhh
Q 013492 227 PFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRAR 306 (442)
Q Consensus 227 p~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~r 306 (442)
|++|+||++|| |++|.|||||+||++|+++|.+|+||||+|
T Consensus 161 p~lkvL~~~fg---------------------------------------I~~~~mTTiha~T~~q~~~D~~~~d~r~~r 201 (337)
T PRK07403 161 PIAKVLHDNFG---------------------------------------IIKGTMTTTHSYTGDQRILDASHRDLRRAR 201 (337)
T ss_pred HHHHHHHHhcC---------------------------------------eeEEEEEEEeeecCCccccccccccccccc
Confidence 99999999999 999999999999999999999999999999
Q ss_pred ccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCC
Q 013492 307 AAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 386 (442)
Q Consensus 307 aaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~ 386 (442)
++++||||++||+||++++|+|+|+|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||||+|+|+|
T Consensus 202 aaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~ 281 (337)
T PRK07403 202 AAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLP 281 (337)
T ss_pred ccccccccCCcchhhhhhhcCcccCCcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 387 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 387 ~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
+||+||+|++||+|||+.+|++++++|+|+++|||||||||+||+||+.+|+++.
T Consensus 282 ~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~Gys~r~~dl~~~~~~~~ 336 (337)
T PRK07403 282 LVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKW 336 (337)
T ss_pred EeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998754
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=6.2e-115 Score=870.36 Aligned_cols=330 Identities=48% Similarity=0.808 Sum_probs=319.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
|++||||||||||||.++|++++++ ++|||||||+.++++++|||||||+||+|+++++ .+++.|.|+|+.|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~--~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRS--DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCC--CCEEEEEecCCCHHHHHHHHccccCCCCcCCcEE-ecCCEEEECCeEEEEEEc
Confidence 4589999999999999999988764 5999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhhH
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~La 226 (442)
++|+++||+++|+|+||||||.|+++++|++|+++|||||++|+|+++++|+||+|||++.|++ ++||||||||||||+
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~La 156 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLA 156 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999998877899999999999976 789999999999999
Q ss_pred HHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccc-hhhhhhh
Q 013492 227 PFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRA 305 (442)
Q Consensus 227 p~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~-h~d~rr~ 305 (442)
|++|+||++|| |++|.|||||+||++|+++|.+ |+|+||+
T Consensus 157 pvlk~L~~~fg---------------------------------------I~~g~mTTvha~T~~q~llD~~~~~d~r~~ 197 (331)
T PRK15425 157 PLAKVINDNFG---------------------------------------IIEGLMTTVHATTATQKTVDGPSHKDWRGG 197 (331)
T ss_pred HHHHHHHHhCC---------------------------------------eEEEEEEEEEeccCccccccCCCCcccccC
Confidence 99999999999 9999999999999999999965 6899999
Q ss_pred hccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccC
Q 013492 306 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 385 (442)
Q Consensus 306 raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~ 385 (442)
|++++||||++||++|++++|||+|+||++|+|+||||+++|++||++++++++++||||++|+++++++|||||+|+|+
T Consensus 198 R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~ 277 (331)
T PRK15425 198 RGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTED 277 (331)
T ss_pred cchhhceecccCCchHHHHhhccccCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhh
Q 013492 386 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 439 (442)
Q Consensus 386 ~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~ 439 (442)
|+||+||+|++||||||+.+|++++++|+|+++||||||||||||+||+.+|++
T Consensus 278 ~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 278 DVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred cEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999853
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-114 Score=867.92 Aligned_cols=333 Identities=47% Similarity=0.788 Sum_probs=322.6
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
|.+||||||||||||.++|++++++ ++||||||| ..++++++|||||||+||+|+++++ .+++.|.|||+.|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~--~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALERE--DVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVS-VTDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcC--CeEEEEecCCCCChHHhhhhheeecCCCCCCCcEE-ecCCEEEECCeEEEEEe
Confidence 5689999999999999999998764 599999999 6799999999999999999999999 78899999999999999
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhh
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~L 225 (442)
++||.++||+++|+|+||||||.|+++++++.|+++|||+|++|+|.++++|++|+|||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999998878899999999999987788999999999999
Q ss_pred HHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccc---hhhh
Q 013492 226 APFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS---HRDL 302 (442)
Q Consensus 226 ap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~---h~d~ 302 (442)
+|++|+||++|| |++|.||||||||.+|.++|.+ |+||
T Consensus 158 ap~lk~L~~~fg---------------------------------------I~~~~~TT~ha~T~~Q~lld~~~~~~kd~ 198 (337)
T PTZ00023 158 APLAKVVNDKFG---------------------------------------IVEGLMTTVHASTANQLTVDGPSKGGKDW 198 (337)
T ss_pred HHHHHHHHHhcC---------------------------------------eeEEEEEEEEecCCCceecCCcCcccCCC
Confidence 999999999999 9999999999999999999954 5899
Q ss_pred hhhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceee
Q 013492 303 RRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 382 (442)
Q Consensus 303 rr~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~ 382 (442)
||+|++|+||||++||++|++++|+|+|+||++|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|
T Consensus 199 r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~ 278 (337)
T PTZ00023 199 RAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGY 278 (337)
T ss_pred cccceeeccccccCCCcchhhhheecccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 383 CDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 383 ~~~~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||||||+||+||+.+|+++.
T Consensus 279 ~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~~ 337 (337)
T PTZ00023 279 TDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQKY 337 (337)
T ss_pred cCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999998763
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=8.8e-114 Score=865.19 Aligned_cols=333 Identities=57% Similarity=0.889 Sum_probs=322.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
|++||||||||||||.++|++++++ ++|||||||+.++++++|||||||+||+|+++++ .+++.|.|+|+.|.++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~--~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKES--AFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE-AFEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcC--CcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEc
Confidence 6789999999999999999988764 5999999999999999999999999999999999 789999999999999999
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCC-CCCeEecCCchhhhh
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCL 225 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~-~~~IISnaSCTTn~L 225 (442)
+||.++||+++|+|+||||||.|+++++++.|+++|||||++|+|++++.+++|+|||++.|++ .++||||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 9999999999999999999999999999999999999999999998875566799999999987 478999999999999
Q ss_pred HHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhh
Q 013492 226 APFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 305 (442)
Q Consensus 226 ap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~ 305 (442)
+|++|+||++|| |++|.|||||+||++|+++|.+|+||||+
T Consensus 158 ap~lk~L~~~fg---------------------------------------I~~~~mTTiha~T~~Q~~~D~~~~d~rr~ 198 (343)
T PRK07729 158 APVVKVLDEQFG---------------------------------------IENGLMTTVHAYTNDQKNIDNPHKDLRRA 198 (343)
T ss_pred HHHHHHHHHhcC---------------------------------------eeEEEEEEEecccCcccccccchhhhhcc
Confidence 999999999999 99999999999999999999999999999
Q ss_pred hccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccC
Q 013492 306 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 385 (442)
Q Consensus 306 raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~ 385 (442)
|++++||||++||++|++++|||+|+|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||||+|+|+
T Consensus 199 R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~ 278 (343)
T PRK07729 199 RACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEE 278 (343)
T ss_pred cccccceecCCCcchhhHHHhccccCCeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 386 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 386 ~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
|+||+||+|++||+|||+.+|++++++|+|+++|||||||||+||+||+.+|++++
T Consensus 279 ~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~Gys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 279 PLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADEL 334 (343)
T ss_pred CccccccCCCCcceEEEcccCeEecCCEEEEEEEecCchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998764
No 8
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-113 Score=852.49 Aligned_cols=333 Identities=59% Similarity=0.937 Sum_probs=324.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
++||||||||||||+++|++.+|++ +||||||||+.++++++|||+|||+||+|.++++ .+++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~-~~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE-VKDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCccc-ccCCeEEECCceEEEEecC
Confidence 3799999999999999999999862 6999999999999999999999999999999999 8889999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHc-CCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhhH
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~a-GAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~La 226 (442)
||.+|||+++|+|+|+||||.|+++|++++|+++ |||||+||||++++++++|+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999999 599999999999889999999999999998999999999999999
Q ss_pred HHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhh
Q 013492 227 PFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRAR 306 (442)
Q Consensus 227 p~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~r 306 (442)
|++|+|+++|| |++|+|||+|+||++|+++|.+|+||||+|
T Consensus 159 p~~kvl~d~fG---------------------------------------I~~g~mTtVh~~T~dQ~~~dgph~~~rr~r 199 (335)
T COG0057 159 PVAKVLNDAFG---------------------------------------IEKGLMTTVHAYTNDQKLVDGPHKDLRRAR 199 (335)
T ss_pred HHHHHHHHhcC---------------------------------------eeEEEEEEEEcccCCCccccCcccchhhhc
Confidence 99999999999 999999999999999999999999999999
Q ss_pred ccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCC
Q 013492 307 AAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 386 (442)
Q Consensus 307 aaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~ 386 (442)
+|++||||++||+||++++|||+|+|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||+++|+|+|
T Consensus 200 aa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~ 279 (335)
T COG0057 200 AAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDP 279 (335)
T ss_pred cccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 387 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 387 ~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
+||+||++++||+|||+++|++++++|+|+++|||||||||+|++|+..+++..+
T Consensus 280 ~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~gys~r~vD~~~~~~~~~ 334 (335)
T COG0057 280 LVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334 (335)
T ss_pred ccccccCCCcceeEEEccceEeccCcEEEEEEEEeccccchHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999988877654
No 9
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=7.9e-111 Score=861.04 Aligned_cols=329 Identities=49% Similarity=0.819 Sum_probs=317.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||||||||||||.++|++.++. +++||+||| ..++++++|||||||+||+|+++++..+++.|.|+|+.|.+++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~--~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRD--DIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcC--CcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 79999999999999999988753 599999999 789999999999999999999999932788999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhhHH
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (442)
+|.++||+++|+||||||||.|+++++++.|+++||||||||+|++ |+|+||+|||++.|++.++||||||||||||+|
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~-dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap 242 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA-DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 242 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC-CCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 579999999999998878999999999999999
Q ss_pred HHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccc-hhhhhhhh
Q 013492 228 FVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRAR 306 (442)
Q Consensus 228 ~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~-h~d~rr~r 306 (442)
++|+||++|| |++|+|||||+||++|+++|.. |+||||+|
T Consensus 243 ~lk~L~~~fG---------------------------------------I~~g~mTTvha~T~tQ~llD~~~~~d~r~~R 283 (421)
T PLN02272 243 LAKVVHEEFG---------------------------------------ILEGLMTTVHATTATQKTVDGPSMKDWRGGR 283 (421)
T ss_pred HHHHHHHhCC---------------------------------------eEEEEEEEEEeccCccccccCccccccccCC
Confidence 9999999999 9999999999999999999965 78999999
Q ss_pred ccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCC
Q 013492 307 AAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 386 (442)
Q Consensus 307 aaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~ 386 (442)
++++||||++||++|++++|||+|+|||+|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|+|||
T Consensus 284 ~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~ 363 (421)
T PLN02272 284 GASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDED 363 (421)
T ss_pred CcccccccCCCccchhhhhcccccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhh
Q 013492 387 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 439 (442)
Q Consensus 387 ~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~ 439 (442)
+||+||+|++||+|||+.+|++++++|+|+++||||||||||||+||+.+|++
T Consensus 364 lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwGys~R~~dl~~~~~~ 416 (421)
T PLN02272 364 VVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMAL 416 (421)
T ss_pred EeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999965
No 10
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-110 Score=835.39 Aligned_cols=331 Identities=43% Similarity=0.725 Sum_probs=320.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~-~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||||||||||||.++|+|++++. ++++||||||+.++++++|||||||+||+|+++++ .+++.|.|+|+.|.+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVR-QERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEcC
Confidence 699999999999999999998632 46999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC-CCCCceeeccCccCCCCCCCeEecCCchhhhhH
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk-~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~La 226 (442)
+|.++||+++|+|+||||||.|.++++|+.|+++|||+|++|+|++ +..+++|||||++.|++.++||||||||||||+
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~La 160 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCII 160 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHH
Confidence 9999999999999999999999999999999999999999999986 434699999999999887889999999999999
Q ss_pred HHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhh
Q 013492 227 PFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRAR 306 (442)
Q Consensus 227 p~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~r 306 (442)
|++|+||++|| |++|+||||||||++|+++|.+|+|+||+|
T Consensus 161 p~lk~L~~~fg---------------------------------------I~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r 201 (336)
T PRK13535 161 PVIKLLDDAFG---------------------------------------IESGTVTTIHSAMNDQQVIDAYHPDLRRTR 201 (336)
T ss_pred HHHHHHHHhcC---------------------------------------eeEEEEEEEEhhcCCcchhhchhhcccccc
Confidence 99999999999 999999999999999999999999999999
Q ss_pred ccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCC
Q 013492 307 AAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 386 (442)
Q Consensus 307 aaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~ 386 (442)
++++||||++||+++++++|||+|+||++|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|+++|
T Consensus 202 ~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~ 281 (336)
T PRK13535 202 AASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELP 281 (336)
T ss_pred EeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhh
Q 013492 387 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 439 (442)
Q Consensus 387 ~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~ 439 (442)
+||+||+|++||+|||+.+|++++++|+|+++|||||||||+||+||+.+|..
T Consensus 282 ~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 282 LVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred ccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999864
No 11
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-110 Score=836.48 Aligned_cols=329 Identities=27% Similarity=0.475 Sum_probs=314.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCcccccCC-cceeeecCCcEEECC-EEEEE
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE-ADVKPVGTDGISVDG-KVIQV 143 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~-~~v~~~~~~~i~v~G-k~I~v 143 (442)
|++||||||||||||.++|++++++ ++||||||| ..++++++|||||||+||+|+ .+++ .+++.|.||| +.|.+
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~--~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~-~~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDP--LVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIR-VVGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEE-EcCCEEecCCCeEEEE
Confidence 5689999999999999999988764 599999999 679999999999999999996 6898 7889999999 89999
Q ss_pred EecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhh
Q 013492 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (442)
Q Consensus 144 ~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn 223 (442)
+++++|+++||+++|+|+||||||.|.+++.+..|+++|||||||++|++ +.||+|||||++.|++.++||||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~-d~p~vV~gVN~~~~~~~~~IISnaSCTTn 156 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA-DAPTVMAGSNDERLSASLPVCCAGAPIAV 156 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC-CCCeEEecCChHHcCCCCCEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999997 47999999999999987889999999999
Q ss_pred hhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhcc-c--hh
Q 013492 224 CLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-S--HR 300 (442)
Q Consensus 224 ~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~-~--h~ 300 (442)
||+|++|+||++|| |++|+|||||+|+ +|...|. + |+
T Consensus 157 ~LapvlkvL~~~fG---------------------------------------I~~g~mTTvHs~q-~~~~~d~~~~~~~ 196 (342)
T PTZ00353 157 ALAPVIRALHEVYG---------------------------------------VEECSYTAIHGMQ-PQEPIAARSKNSQ 196 (342)
T ss_pred HHHHHHHHHHHhcC---------------------------------------eeEEEeeeeeecc-eeecCCCcccccc
Confidence 99999999999999 9999999999997 7777775 4 59
Q ss_pred hhhhhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCce
Q 013492 301 DLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGIL 380 (442)
Q Consensus 301 d~rr~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil 380 (442)
||||+|+|++||||++||++|++++|||+|+|||+|+|+||||++||++||+++++|++++||||++|+++++++|||||
T Consensus 197 d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil 276 (342)
T PTZ00353 197 DWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVL 276 (342)
T ss_pred cccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCeeeeccCCCCcceEEeCCCCccc-cCCeEEEEEEecCCcchhhhHhHHHHHHhhc
Q 013492 381 SVCDEPLVSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNEWGYSQRVVDLADIVANN 440 (442)
Q Consensus 381 ~~~~~~~VS~Df~~~~~S~~~d~~~t~~~-~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~ 440 (442)
+|+|+|+||+||+|++ |+|||+.+|+++ +++|+|+++||||||||||||+||+.+|.+.
T Consensus 277 ~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 277 CISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred EecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999 599999999994 8899999999999999999999999999764
No 12
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2e-109 Score=832.72 Aligned_cols=331 Identities=47% Similarity=0.802 Sum_probs=318.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCcccccCCc-ceeeecCCcEEECCEEEEEE
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~-~v~~~~~~~i~v~Gk~I~v~ 144 (442)
+++||||||||||||..+|.+.+++ ++++||||| ..++++++|||||||+||+|++ +++..+++.|.++|+.|.++
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~--~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRD--DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCC--CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 4689999999999999999998764 599999999 6799999999999999999996 89832667799999999999
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhh
Q 013492 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNC 224 (442)
Q Consensus 145 ~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~ 224 (442)
+.+||.++||+++|+||||||||.|+++++|+.|+++|||||+||+|++ |+|++|||||++.|++.++|||||||||||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~-dvp~iV~gVN~~~~~~~~~IISnasCTTn~ 160 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEHEYKSDLDIVSNASCTTNC 160 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC-CCCeEecCcCHHHhCCCCCEEECCCchHHH
Confidence 9999999999999999999999999999999999999999999999987 579999999999998878999999999999
Q ss_pred hHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccc-hhhhh
Q 013492 225 LAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLR 303 (442)
Q Consensus 225 Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~-h~d~r 303 (442)
|+|++|+||++|| |++|.|||||+||++|+++|.. |+|+|
T Consensus 161 Lap~lk~L~~~fg---------------------------------------I~~~~mTTiha~T~~q~l~d~~~~~d~r 201 (338)
T PLN02358 161 LAPLAKVINDRFG---------------------------------------IVEGLMTTVHSITATQKTVDGPSMKDWR 201 (338)
T ss_pred HHHHHHHHHHhcC---------------------------------------eeEEEEEEEEeecCcccccCCCCCcccc
Confidence 9999999999999 9999999999999999999965 79999
Q ss_pred hhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeec
Q 013492 304 RARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 383 (442)
Q Consensus 304 r~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~ 383 (442)
|+|++++||||++||++|++++|||+|+||++|+|+||||++||++||++++++++++||||++|+++++++|||||+|+
T Consensus 202 ~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~ 281 (338)
T PLN02358 202 GGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYT 281 (338)
T ss_pred CccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhh
Q 013492 384 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 439 (442)
Q Consensus 384 ~~~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~ 439 (442)
|+|+||+||+|++||+|||+.+|++++++|+|+++||||||||||||+||+.+|.+
T Consensus 282 ~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 282 EDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred CCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999864
No 13
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.5e-109 Score=828.41 Aligned_cols=329 Identities=46% Similarity=0.761 Sum_probs=318.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
|++||||||||||||.++|++.+++ +++|++||| ..++++++|||||||+||+|+++++ .+++.|.++|+.|.+++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~--~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~-~~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWP--ELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVT-AEGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEE-EcCCEEEECCEEEEEEe
Confidence 4589999999999999999988764 599999999 7799999999999999999999999 89999999999999999
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCC-CCCceeeccCccCCCCC-CCeEecCCchhh
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTN 223 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~-d~pt~V~gVN~~~y~~~-~~IISnaSCTTn 223 (442)
+++|.++||+ |+|+||||||.|+++++|+.|+++|||||++|+|+++ |+||+|||||++.|++. ++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999998 9999999999999999999999999999999999876 57999999999999974 789999999999
Q ss_pred hhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhh
Q 013492 224 CLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLR 303 (442)
Q Consensus 224 ~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~r 303 (442)
||+|++|+||++|| |++|.|||||+||++|+++|.+|+|+|
T Consensus 156 ~Lap~lk~L~~~fg---------------------------------------I~~~~mTTvha~t~~q~lld~~~~d~r 196 (334)
T PRK08955 156 CLAPVVKVIHEKLG---------------------------------------IKHGSMTTIHDLTNTQTILDAPHKDLR 196 (334)
T ss_pred HHHHHHHHHHHhcC---------------------------------------eeEEEEEEEEeccCccccccCCCcccc
Confidence 99999999999999 999999999999999999998899999
Q ss_pred hhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeec
Q 013492 304 RARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 383 (442)
Q Consensus 304 r~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~ 383 (442)
|+|++++||||++||+++++++|||+|+||++|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|+
T Consensus 197 ~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~ 276 (334)
T PRK08955 197 RARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYE 276 (334)
T ss_pred cchhheeccccccCCCccccceEccccCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhh
Q 013492 384 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 439 (442)
Q Consensus 384 ~~~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~ 439 (442)
|+|+||+||+|++||+|||+.+|++++++|+|+++|||||||||+||+||+.+|..
T Consensus 277 ~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 277 ERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKVGL 332 (334)
T ss_pred cCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999865
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=8.4e-109 Score=825.08 Aligned_cols=323 Identities=62% Similarity=0.958 Sum_probs=312.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCC-cEEECCE-EEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD-GISVDGK-VIQVVSNR 147 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~-~i~v~Gk-~I~v~~~~ 147 (442)
||||||||||||.++|+++++++.+++||||||..++++++|||||||+||+|+++++ .+++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-ADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEE-ecCCceEEECCeEEEEEEecC
Confidence 7999999999999999998764236999999999999999999999999999999999 7778 7999999 99999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhhHH
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (442)
+|.++||+++|+|+||||||.|+++++|+.|+++|||||++|+|+++++||+|||||++.|++.++||||||||||||+|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999876689999999999998778899999999999999
Q ss_pred HHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhhc
Q 013492 228 FVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARA 307 (442)
Q Consensus 228 ~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~ra 307 (442)
++|+||++|| |+++.|||||++|++|+++|.+|+|+|++|+
T Consensus 160 ~lk~L~~~fg---------------------------------------I~~~~~TTiha~t~~q~lld~~~~d~r~~r~ 200 (327)
T TIGR01534 160 LAKVLDEAFG---------------------------------------IVSGLMTTVHSYTNDQNLVDGPHKDLRRARA 200 (327)
T ss_pred HHHHHHHhcC---------------------------------------eeEEEEEEEEeecCccccccCCCCCCcCceE
Confidence 9999999999 9999999999999999999988899999999
Q ss_pred cccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCCe
Q 013492 308 AALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL 387 (442)
Q Consensus 308 aa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~~ 387 (442)
+++||||++||++|++++|||+|+||++|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|+|+|+
T Consensus 201 ~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~ 280 (327)
T TIGR01534 201 AALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDEL 280 (327)
T ss_pred eEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCcceEEeCCCCccc--cCCeEEEEEEecCCcchhhhHhH
Q 013492 388 VSVDFRCSDVSSTVDSSLTLVM--GDDMVKVIAWYDNEWGYSQRVVD 432 (442)
Q Consensus 388 VS~Df~~~~~S~~~d~~~t~~~--~~~~vKv~~WyDNE~GYs~Rvvd 432 (442)
||+||+|++||+|||+.+|+++ |++++|+++|||||||||+||+|
T Consensus 281 VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 281 VSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred eeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCCCceeeeEccC
Confidence 9999999999999999999994 48999999999999999999987
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-108 Score=849.90 Aligned_cols=333 Identities=41% Similarity=0.659 Sum_probs=319.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCC--CCcEEEEEe----cCCChhhhhhhcccCcccccCCcceeeec--CCcEEECCE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKD--SPLEVVAIN----DTGGVKQASHLLKYDSTLGIFEADVKPVG--TDGISVDGK 139 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~--~~~evvaIn----d~~~~~~la~LlkyDSt~g~f~~~v~~~~--~~~i~v~Gk 139 (442)
+.||||||||||||.++|++.++.. .+++||||| |..++++++|||+|||+||+|+++++ .+ ++.|.+||+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~-~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTIT-VDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceE-eecCCCEEEECCE
Confidence 5699999999999999999987621 369999995 67899999999999999999999998 44 688999999
Q ss_pred EEEEEecCCCCCCCCCCcccc--EEEcCCCCCCCHhhHHHHHH-cCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEe
Q 013492 140 VIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIIS 216 (442)
Q Consensus 140 ~I~v~~~~~p~~l~W~~~gvD--iVie~TG~f~~~e~a~~hl~-aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IIS 216 (442)
.|+++++++|.++||+++|+| +||||||.|.+++.++.|++ +||||||||||+++++|++|+|||++.|++.++|||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999999999 99999999999999999999 899999999999988899999999999987788999
Q ss_pred cCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhc
Q 013492 217 NASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLD 296 (442)
Q Consensus 217 naSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD 296 (442)
|||||||||+|++|+||++|| |++|+|||+||||++|+++|
T Consensus 286 nASCTTN~LaPvlKvL~d~fG---------------------------------------I~~g~mTTvHa~T~dQ~lvD 326 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKYG---------------------------------------IVNGHVETVHSYTNDQNLID 326 (477)
T ss_pred CCccHHHHHHHHHHHHHHhcC---------------------------------------eeEEEEEEEecccCChHHhh
Confidence 999999999999999999999 99999999999999999999
Q ss_pred cchhhhhhhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcc-ccc
Q 013492 297 ASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA-DNE 375 (442)
Q Consensus 297 ~~h~d~rr~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa-~~~ 375 (442)
..|+|+||+|++++||||++||+||++++|||+|+||++|+|+||||++||++||++++++++++||||++|++++ +++
T Consensus 327 ~~hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~ 406 (477)
T PRK08289 327 NYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSP 406 (477)
T ss_pred hhhhcCcccceeeeeeEecCCChhhhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 599
Q ss_pred CCCceeeccC-CeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 013492 376 LKGILSVCDE-PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 441 (442)
Q Consensus 376 lkgil~~~~~-~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~~ 441 (442)
|+|||+|+++ |+||+||+|++||+|||+.+|+++ ++++|+++||||||||||||+||+.+|++.+
T Consensus 407 L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 407 LQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred ccceeeecccCCeeeeeecCCCchhheehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence 9999999999 799999999999999999999999 6899999999999999999999999998753
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=3.1e-106 Score=805.71 Aligned_cols=323 Identities=45% Similarity=0.770 Sum_probs=312.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCC-CCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~-~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
||||||||||||.++|++++++ .++|||++|||+.+.++++|||+|||+||+|+++++ .+++.|.|+|+.|.++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVK-VDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEE-EeCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 346999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC-CCCCceeeccCccCCCCCCCeEecCCchhhhhHH
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk-~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (442)
|.++||+++|+|+||||||.|.+++.+++|+++||++|++|+|.+ +..+++|||||++.|++.++||||||||||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap 159 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVP 159 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999976 3235899999999998778899999999999999
Q ss_pred HHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhhc
Q 013492 228 FVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARA 307 (442)
Q Consensus 228 ~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~ra 307 (442)
++|+||++|| |++|.|||||+||++|+++|.+|+|+||+|+
T Consensus 160 ~lk~L~~~fg---------------------------------------I~~~~~tTvha~t~~q~~vD~~~~d~r~~r~ 200 (325)
T TIGR01532 160 LIKLLDDAIG---------------------------------------IESGTITTIHSAMNDQQVIDAYHHDLRRTRA 200 (325)
T ss_pred HHHHHHHhcC---------------------------------------eeEEEEEEEEhhcCCccccccchhhccccch
Confidence 9999999999 9999999999999999999999999999999
Q ss_pred cccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCCe
Q 013492 308 AALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL 387 (442)
Q Consensus 308 aa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~~ 387 (442)
|++||||++||++|++++|||+|+||++|+||||||+++|++||++++++++++|||+++|+++++++|||||+|+++|+
T Consensus 201 a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~ 280 (325)
T TIGR01532 201 ASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPL 280 (325)
T ss_pred HhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCcceEEeCCCCccccCCeEEEEEEecCCcchhhhHhH
Q 013492 388 VSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVD 432 (442)
Q Consensus 388 VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvd 432 (442)
||+||+|++||+|||+.+|++++++|+|+++|||||||||+||+|
T Consensus 281 vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 281 VSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred cccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcceeeeEccC
Confidence 999999999999999999999999999999999999999999987
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-86 Score=643.94 Aligned_cols=283 Identities=49% Similarity=0.807 Sum_probs=270.3
Q ss_pred hHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCCCCCCCCCc
Q 013492 79 IGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL 157 (442)
Q Consensus 79 IGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p~~l~W~~~ 157 (442)
|||.++ + ++ ++++|+||| .++.++++|+++|||+||+|+++++ .++..+.++|+.|++++++||..|+|.++
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k-~~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVK-AENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCcccccee-ecCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 43 399999999 7799999999999999999999999 78888889999999999999999999999
Q ss_pred cccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCchhhhhHHHHHHHHHhhc
Q 013492 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFG 237 (442)
Q Consensus 158 gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG 237 (442)
|+|+|+|+||.|.+.+++.+|+++|||||+|++|++ |.||||+|||+++|+++..||||+|||||||+|++|++|++||
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~-dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fg 152 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA-DAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFG 152 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC-CCCcccccccccccccccceeechhhhhccccchhheeccccc
Confidence 999999999999999999999999999999999998 5899999999999999877999999999999999999999999
Q ss_pred cchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhc-cchhhhhhhhccccceecCC
Q 013492 238 KYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLD-ASHRDLRRARAAALNIVPTS 316 (442)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD-~~h~d~rr~raaa~NIIPts 316 (442)
|++|+|||+|++|++|+++| ++.++||++|.+.|||||.+
T Consensus 153 ---------------------------------------I~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPAS 193 (285)
T KOG0657|consen 153 ---------------------------------------IMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPAS 193 (285)
T ss_pred ---------------------------------------cccccccceeeeccccccccCcccccccccchhhhcccccc
Confidence 99999999999999999999 67789999999999999999
Q ss_pred CchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCCeeeeccCCCC
Q 013492 317 TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSD 396 (442)
Q Consensus 317 tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~~VS~Df~~~~ 396 (442)
||++||++||||||+||++|||+||||+ ++++||+++++|++++|+|+++++++++++||||| ||+
T Consensus 194 TgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~~~~lkGIL--te~----------- 259 (285)
T KOG0657|consen 194 TGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLASEIPLKGIL--TEH----------- 259 (285)
T ss_pred ccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhhcccccccc--ccc-----------
Confidence 9999999999999999999999999999 99999999999999999999999999999999999 877
Q ss_pred cceEEeCCCCccccCCeEEEEEEecCCcchhhhHhHHHHHHhhc
Q 013492 397 VSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 440 (442)
Q Consensus 397 ~S~~~d~~~t~~~~~~~vKv~~WyDNE~GYs~Rvvdl~~~~~~~ 440 (442)
+| |+|||||||||+||+||+.||+++
T Consensus 260 ---------------~f---ISWYDNE~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 260 ---------------HF---ISWYDNEFGYSNRVVDLMEHMASK 285 (285)
T ss_pred ---------------ce---eeeeccccccchHHHHHHHHHhcC
Confidence 33 899999999999999999999874
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.1e-57 Score=457.84 Aligned_cols=235 Identities=19% Similarity=0.265 Sum_probs=211.8
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChh---hhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVK---QASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 71 VaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~---~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
|||||||||||+++|++..++ ++||||||| .+++ +++|+++||+.|+.+...++ .+++++.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~--d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~-~~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD--DMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPR-FEEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC--CcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceE-eccCceEecCC--------
Confidence 699999999999999998764 599999999 5777 78888999998855444677 67788888875
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCC-CCceeeccCccCCCCCCCeEecCCchhhhhH
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d-~pt~V~gVN~~~y~~~~~IISnaSCTTn~La 226 (442)
+.++. .++|+|+||||.|..+++++.|+++|+|+|++++|+++. .++||+|+|++.|.+.+ ||||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 33333 379999999999999999999999999999999998863 58999999999998645 9999999999999
Q ss_pred HHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhhhh
Q 013492 227 PFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRAR 306 (442)
Q Consensus 227 p~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr~r 306 (442)
|++|+|+++|| |++|.|||+|+ |+||+ |+||+|
T Consensus 144 p~~~~L~~~fG---------------------------------------I~~~~~Ttvh~-t~dq~-------d~rrgr 176 (333)
T TIGR01546 144 RTLNAINDYSK---------------------------------------VDKVRAVMVRR-AADPN-------DVKKGP 176 (333)
T ss_pred HHHHHHHHhcC---------------------------------------eEEEEEEEEee-cCChh-------hhccCc
Confidence 99999999999 99999999996 99994 899999
Q ss_pred ccccceecC-CC---chhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhccc
Q 013492 307 AAALNIVPT-ST---GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 373 (442)
Q Consensus 307 aaa~NIIPt-st---Gaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~ 373 (442)
++||||+ +| +++|++++|||+|+ |+|+|+||||+++|++||+++++|++++||||++|+++++
T Consensus 177 --~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 177 --INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred --hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 6999999 56 77999999999998 9999999999999999999999999999999999999887
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=1.3e-51 Score=374.64 Aligned_cols=157 Identities=56% Similarity=0.868 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhhhh
Q 013492 225 LAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRR 304 (442)
Q Consensus 225 Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~rr 304 (442)
|+|++|+||++|| |++|.|||+|+||++|+++|.+|+||||
T Consensus 1 Lap~~k~l~~~fg---------------------------------------I~~~~~Ttih~~t~~Q~~~D~~~~d~rr 41 (157)
T PF02800_consen 1 LAPVLKVLDDNFG---------------------------------------IEKGRMTTIHAYTDPQKLVDGPHKDWRR 41 (157)
T ss_dssp HHHHHHHHHHHHE---------------------------------------EEEEEEEEEEESSTTSBSSSS--SSTGT
T ss_pred CcchhhhhhhhcC---------------------------------------EEEEEEEEEeccCCccceeeeccccccc
Confidence 7999999999999 9999999999999999999999999999
Q ss_pred hhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccccCCCceeecc
Q 013492 305 ARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 384 (442)
Q Consensus 305 ~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~ 384 (442)
+|++++||||++||++|++++|||+|+|||+|+|+||||+++|++||+++++|++++||||++|+++++++++||++|++
T Consensus 42 gr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~ 121 (157)
T PF02800_consen 42 GRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTE 121 (157)
T ss_dssp TSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEH
T ss_pred cccccccccccccccchhhhhhhhhccCcceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccCCCCcceEEeCCCCccccCCeEEEEEEe
Q 013492 385 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 420 (442)
Q Consensus 385 ~~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~Wy 420 (442)
+|+||+||++++||++||...+++++++++|+++||
T Consensus 122 ~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 122 DPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred cceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999999999999999999999999
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-48 Score=388.41 Aligned_cols=250 Identities=24% Similarity=0.318 Sum_probs=204.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcc---cCcccccCCcceeeecCCcEEECCEEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK---YDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Llk---yDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~ 144 (442)
++||||||||||||++++++.+++ ++||++|+|. ++++.+||++ || .||.++..++..++.++.+.|.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~--d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~----- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP--DMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGT----- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC--CcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCC-----
Confidence 379999999999999999998864 5999999995 5788889887 44 4666555443223344555443
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCC--ceeeccCccCCCCCCCeEecCCchh
Q 013492 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP--TYVVGVNADAYKPDEPIISNASCTT 222 (442)
Q Consensus 145 ~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~p--t~V~gVN~~~y~~~~~IISnaSCTT 222 (442)
+..+. .++|+||||||.+...+.++.|+++| ++||+++|+++++| +||+|||++.|... ++|+|+||||
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 22221 27999999999999999999999999 78999999876543 48999999999753 4999999999
Q ss_pred hhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhhhccchhhh
Q 013492 223 NCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDL 302 (442)
Q Consensus 223 n~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~lD~~h~d~ 302 (442)
|||+|++|+||++|| |+++.|||+|++|+ + +++
T Consensus 143 ~~l~~~l~~L~~~fg---------------------------------------I~~~~vTtv~a~td------~--~~~ 175 (341)
T PRK04207 143 TGLCRTLCALDRAFG---------------------------------------VKKVRATLVRRAAD------P--KEV 175 (341)
T ss_pred HHHHHHHHHHHHhcC---------------------------------------ceEEEEEEEEcCCC------c--chh
Confidence 999999999999999 99999999999984 2 355
Q ss_pred hhhhccccceecCC----CchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhcccc----
Q 013492 303 RRARAAALNIVPTS----TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN---- 374 (442)
Q Consensus 303 rr~raaa~NIIPts----tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~~---- 374 (442)
| |++++||+|.+ ++.++++++|+|+|+ ++++|+||||+++|++|+++++++++++|||+++|+++++-
T Consensus 176 ~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~ 251 (341)
T PRK04207 176 K--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVR 251 (341)
T ss_pred h--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeec
Confidence 4 78999999862 355789999999997 99999999999999999999999999999999999998753
Q ss_pred cCCCceeeccCCe
Q 013492 375 ELKGILSVCDEPL 387 (442)
Q Consensus 375 ~lkgil~~~~~~~ 387 (442)
.-.|+-+ +.+++
T Consensus 252 ~~~~~~s-~~~~~ 263 (341)
T PRK04207 252 ASDGIDS-TAELI 263 (341)
T ss_pred cccCCCC-hHHHh
Confidence 2235555 54443
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1.1e-48 Score=354.59 Aligned_cols=149 Identities=55% Similarity=0.907 Sum_probs=140.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC-ChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~-~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
|||||||||||||+++|++..++ +||||||||.. ++++++|||||||+||+|+++++ .+++.|.++|+.|.+++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~--~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~-~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQP--DIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVE-VDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTST--TEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEE-EETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhcccc--eEEEEEEecccccchhhhhhhhccccccceecccc-cccceeEeecccccchhhh
Confidence 69999999999999999999775 59999999987 99999999999999999999999 8899999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCC-CCceeeccCccCCCCCCCeEecCCc
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASC 220 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d-~pt~V~gVN~~~y~~~~~IISnaSC 220 (442)
+|.++||+++|+|+|+||||.|.+++.++.|+++||||||+|+|++++ +||||+|||++.|++.++|||||||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999999986 8999999999999998899999999
No 22
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=6.4e-44 Score=321.84 Aligned_cols=149 Identities=54% Similarity=0.905 Sum_probs=142.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+||||||||||||.++|++..++ ++++++|||..++++++|||+|||+||+|+.+++ .+++.|.++|+.|.++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~--~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~-~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERP--DIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVE-VDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEE-EeCCEEEECCEEEEEEecCC
Confidence 58999999999999999988764 5999999998899999999999999999999998 78899999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCc
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSC 220 (442)
|.++||+++|+|+||||||.|.+++.++.|+++||||||||+|++++.+|||+|||++.|++.++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999998766799999999999988889999999
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-36 Score=301.69 Aligned_cols=231 Identities=25% Similarity=0.376 Sum_probs=193.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||+|.| .|.+|+.++|+|.++..+.++++++.... ..+..+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~------------------------~~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR------------------------SAGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc------------------------cCCCeeeeCCceeEEe---
Confidence 6999999 99999999999998644567887775210 1223344566555554
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC----CCCCceeeccCccCCCCC--CCeEecCCch
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--EPIISNASCT 221 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk----~d~pt~V~gVN~~~y~~~--~~IISnaSCT 221 (442)
++...+|. ++|+||+|+|.+.+++.+++|+++|+ +||+.++. ++.|++++|||++.++.. ++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 34445674 89999999999999999999999998 78987763 367999999999999765 4799999999
Q ss_pred hhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeecccc-----------
Q 013492 222 TNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTG----------- 290 (442)
Q Consensus 222 Tn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg----------- 290 (442)
|+|++|.+++|+++|+ |+++.|||+|++||
T Consensus 131 ~t~~~l~l~pL~~~~~---------------------------------------i~~i~vtt~~~~SGaG~~~~~~l~~ 171 (334)
T PRK14874 131 TIQMVVALKPLHDAAG---------------------------------------IKRVVVSTYQAVSGAGKAGMEELFE 171 (334)
T ss_pred HHHHHHHHHHHHHhcC---------------------------------------ceEEEEEEEechhhCChhhHHHHHH
Confidence 9999999999999999 99999999999998
Q ss_pred -chhhhccc---hhhhhhhhccccceecCC-----CchhHH-------HHHhc--cccCCceeEEEEeeCcCcceeEEEE
Q 013492 291 -DQRLLDAS---HRDLRRARAAALNIVPTS-----TGAAKA-------VALVL--PALKGKLNGIALRVPTPNVSVVDLV 352 (442)
Q Consensus 291 -~Q~~lD~~---h~d~rr~raaa~NIIPts-----tGaaka-------v~kVl--PeL~gkl~g~avRVPt~~vs~vdl~ 352 (442)
+|.++|.+ ++++||+|++++||+|+. +|++++ +.+++ |++ +++++++|||+++||+.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~ 249 (334)
T PRK14874 172 QTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVN 249 (334)
T ss_pred HHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEE
Confidence 46667743 468899999999999996 788777 35666 877 59999999999999999999
Q ss_pred EEEccCCCHHHHHHHHHhc
Q 013492 353 VQVSKKTFAEEVNAAFRES 371 (442)
Q Consensus 353 v~l~k~~~~eeV~~a~~~a 371 (442)
++++++++.|||+++|+++
T Consensus 250 v~~~~~~~~~~v~~~l~~~ 268 (334)
T PRK14874 250 IEFEEPISVEEAREILAEA 268 (334)
T ss_pred EEECCCCCHHHHHHHHHcC
Confidence 9999999999999999984
No 24
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-35 Score=296.13 Aligned_cols=234 Identities=15% Similarity=0.207 Sum_probs=194.8
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
.++||| | +|.+||.++++|++|+ |++ .++ +|| +|. .+ +.++.+.++|+.+.|..
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~---fpv---~~l-------~l~--~s~-------~~-s~gk~i~f~g~~~~V~~- 57 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD---LEI---EQI-------SIV--EIE-------PF-GEEQGIRFNNKAVEQIA- 57 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC---Cch---hhe-------eec--ccc-------cc-cCCCEEEECCEEEEEEE-
Confidence 468999 9 9999999999999985 663 321 444 331 12 56788999999999964
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCC--CCCeEecCCc
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNASC 220 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~--~~~IISnaSC 220 (442)
.++..|. ++|++|+ +|..+++++++...++|+ +||+++| .+|+|++|||||++.+.. ..+||+||||
T Consensus 58 --l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 58 --PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred --CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 4444564 8999999 999999999999999999 8999998 358999999999999875 3689999999
Q ss_pred hhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccch-hhhccch
Q 013492 221 TTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ-RLLDASH 299 (442)
Q Consensus 221 TTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q-~~lD~~h 299 (442)
||..|++.|++||+.|| |++..+|||||+||.. +.+|..+
T Consensus 131 sTi~l~~aL~pL~~~~~---------------------------------------l~rv~VsTyQavSGaG~~gv~eL~ 171 (322)
T PRK06901 131 QVSQLALALAPFLQEQP---------------------------------------LSQIFVTSLLPASYTDAETVKKLA 171 (322)
T ss_pred HHHHHHHHHHHHHHhcC---------------------------------------CcEEEEEeecchhhcCHhHHHHHH
Confidence 99999999999999999 9999999999999993 3444221
Q ss_pred hh----------hhhhhccccceecCC-CchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHH
Q 013492 300 RD----------LRRARAAALNIVPTS-TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAF 368 (442)
Q Consensus 300 ~d----------~rr~raaa~NIIPts-tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~ 368 (442)
+. -...+.+|+|+||+. .|-..+..|+||+| .+++.+|+||||.++|.+.++++++++++.||++++|
T Consensus 172 ~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l 250 (322)
T PRK06901 172 GQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEW 250 (322)
T ss_pred HHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHH
Confidence 10 012478999999998 46677888999988 2599999999999999999999999999999999999
Q ss_pred Hhccc
Q 013492 369 RESAD 373 (442)
Q Consensus 369 ~~aa~ 373 (442)
++++.
T Consensus 251 ~~~~g 255 (322)
T PRK06901 251 QQNNL 255 (322)
T ss_pred HhCCC
Confidence 98764
No 25
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=1.4e-35 Score=297.53 Aligned_cols=233 Identities=23% Similarity=0.326 Sum_probs=190.9
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
||+|.| .|.+|+.++|.|.++..+.++++.+... + ..+..+.+.|+.+.+.. -+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------~-----------~~g~~~~~~~~~~~~~~-~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------R-----------SAGRKVTFKGKELEVNE-AK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------c-----------cCCCeeeeCCeeEEEEe-CC
Confidence 689999 9999999999998864334554433210 0 23344556665444432 22
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCC--CCCeEecCCchh
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNASCTT 222 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~--~~~IISnaSCTT 222 (442)
+. .| .++|+||+|+|.+.+++.+++|+++|+ +||+.++ ++++|++|+|||++.++. .++|||||+|+|
T Consensus 56 ~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 IE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred hH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 22 24 389999999999999999999999998 6898876 236899999999999875 356999999999
Q ss_pred hhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccc-----------
Q 013492 223 NCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGD----------- 291 (442)
Q Consensus 223 n~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~----------- 291 (442)
||+++.+++|+++|+ |+++.|||+|++||+
T Consensus 130 t~~~l~l~pL~~~~~---------------------------------------i~~i~vtt~~~vSgaG~~~~~~l~~q 170 (339)
T TIGR01296 130 IQMVVVLKPLHDEAK---------------------------------------IKRVVVSTYQAVSGAGNAGVEELYNQ 170 (339)
T ss_pred HHHHHHHHHHHHhcC---------------------------------------ccEEEEEeeechhhcChhhHHHHHHH
Confidence 999999999999999 999999999999997
Q ss_pred -hhhhccchhh--------hhhhhccccceecCC-----CchhHHHHHhccccC-------CceeEEEEeeCcCcceeEE
Q 013492 292 -QRLLDASHRD--------LRRARAAALNIVPTS-----TGAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVD 350 (442)
Q Consensus 292 -Q~~lD~~h~d--------~rr~raaa~NIIPts-----tGaakav~kVlPeL~-------gkl~g~avRVPt~~vs~vd 350 (442)
|++++..++| .+++|++++||||+. +|+++++.++.|||+ .+++++++|||++++|+.+
T Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~ 250 (339)
T TIGR01296 171 TKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSES 250 (339)
T ss_pred HHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEE
Confidence 4455544554 788999999999995 799999999999986 3799999999999999999
Q ss_pred EEEEEccCCCHHHHHHHHHhcc
Q 013492 351 LVVQVSKKTFAEEVNAAFRESA 372 (442)
Q Consensus 351 l~v~l~k~~~~eeV~~a~~~aa 372 (442)
++++++++++.||++++|++++
T Consensus 251 v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 251 VNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred EEEEECCCCCHHHHHHHHhcCC
Confidence 9999999999999999998553
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=2.2e-32 Score=278.10 Aligned_cols=237 Identities=15% Similarity=0.182 Sum_probs=186.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||||+| +|.+||.++++|+++. +|++.-+ +++ .| -+ +++..+.++|+.+.+.. -
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~--~fp~~~~----------~~~--ss--------~~-s~g~~~~f~~~~~~v~~-~ 56 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER--DFDAIRP----------VFF--ST--------SQ-LGQAAPSFGGTTGTLQD-A 56 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC--CCccccE----------EEE--Ec--------hh-hCCCcCCCCCCcceEEc-C
Confidence 3899999 9999999999998442 3664111 222 22 12 56677888888776643 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCCC--CCe--EecCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--EPI--ISNAS 219 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~~--~~I--ISnaS 219 (442)
++. -.| .++|+||+|+|..++++.+++..++|...+||+++| ++|+|++|++||++.+... .+| |+|||
T Consensus 57 ~~~-~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianPN 133 (366)
T TIGR01745 57 FDI-DAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGGN 133 (366)
T ss_pred ccc-ccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECcC
Confidence 232 034 389999999999999999999999995548999998 3589999999999987653 567 89999
Q ss_pred chhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccch-hhhccc
Q 013492 220 CTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ-RLLDAS 298 (442)
Q Consensus 220 CTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q-~~lD~~ 298 (442)
|||..|++.|++||++|| |++..+|||||+||+. +.+|..
T Consensus 134 Cst~~l~~aL~pL~~~~~---------------------------------------i~~v~VsTyQAvSGAG~~g~~eL 174 (366)
T TIGR01745 134 CTVSLMLMSLGGLFANDL---------------------------------------VEWVSVATYQAASGGGARHMREL 174 (366)
T ss_pred HHHHHHHHHHHHHHhccC---------------------------------------ccEEEEEechhhhhcCHHHHHHH
Confidence 999999999999999999 9999999999999995 233311
Q ss_pred hhh-------------------------------------hhhhhccccceecCC-----CchhHHHHH-------hc--
Q 013492 299 HRD-------------------------------------LRRARAAALNIVPTS-----TGAAKAVAL-------VL-- 327 (442)
Q Consensus 299 h~d-------------------------------------~rr~raaa~NIIPts-----tGaakav~k-------Vl-- 327 (442)
.+. --.++.+|+|+||+. +|+++++.| ||
T Consensus 175 ~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~ 254 (366)
T TIGR01745 175 LTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGT 254 (366)
T ss_pred HHHHHHHhccccccccccchhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCC
Confidence 100 013577899999995 477777654 55
Q ss_pred -cccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhccc
Q 013492 328 -PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 373 (442)
Q Consensus 328 -PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~ 373 (442)
|.| +++++|+||||.++|...++++++++++.||++++|+++..
T Consensus 255 ~~~l--~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~L~~~~~ 299 (366)
T TIGR01745 255 SSTI--PVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIRAHNP 299 (366)
T ss_pred CCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 555 59999999999999999999999999999999999998543
No 27
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-32 Score=271.32 Aligned_cols=295 Identities=25% Similarity=0.290 Sum_probs=212.4
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCc-EEECCEEEEEEe
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVS 145 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~-i~v~Gk~I~v~~ 145 (442)
++||||.| +|.+|+.+++.|.++. .+++.+. ++ .|+ + +.|.. +.+.|+.+.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~~------------~~--AS~--------r-SaG~~~~~f~~~~~~v~~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEELV------------LL--ASA--------R-SAGKKYIEFGGKSIGVPE 56 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceEE------------EE--ecc--------c-ccCCccccccCccccCcc
Confidence 36999999 9999999999999973 3455322 22 221 1 33444 778887765542
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCCC--CC-eEecC
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--EP-IISNA 218 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~~--~~-IISna 218 (442)
. -.....|. ++||||+|.|.-.+++.+++..++|+ +||++.| .+|+|++|++||++.+... .+ ||+|+
T Consensus 57 ~-~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 D-AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred c-cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 1 13445566 89999999999999999999999997 9999998 3589999999999997643 34 99999
Q ss_pred CchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchh-hhcc
Q 013492 219 SCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR-LLDA 297 (442)
Q Consensus 219 SCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~-~lD~ 297 (442)
||||.+|++.||+|+++|| |++..++||||+||+.. .+++
T Consensus 132 NCst~~l~~aL~PL~~~~~---------------------------------------i~~v~VsTyQAvSGAG~~~~~e 172 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFG---------------------------------------IKRVVVSTYQAVSGAGAEGGVE 172 (334)
T ss_pred ChHHHHHHHHHHHHHhhcC---------------------------------------ceEEEEEEeehhhhcCccchhh
Confidence 9999999999999999999 99999999999999954 4443
Q ss_pred chhhhh----------hhhccccceecCCC-----chhHHHHH-------hccccCCceeEEEEeeCcCcceeEEEEEEE
Q 013492 298 SHRDLR----------RARAAALNIVPTST-----GAAKAVAL-------VLPALKGKLNGIALRVPTPNVSVVDLVVQV 355 (442)
Q Consensus 298 ~h~d~r----------r~raaa~NIIPtst-----Gaakav~k-------VlPeL~gkl~g~avRVPt~~vs~vdl~v~l 355 (442)
.-...+ .++.+|+|+||+.. |++|+++| ||..-..+++++|+||||..+|...+++++
T Consensus 173 l~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~ 252 (334)
T COG0136 173 LAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEF 252 (334)
T ss_pred HHHHHhhhccCcccccccccccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEe
Confidence 211111 26789999999974 57777765 555445689999999999999999999999
Q ss_pred ccCCCHHHHHHHHHhcccccCCCceeec-cCCeeeeccCCCCcceEEeCCCCcc-ccCCeEEEEEEecC-CcchhhhHhH
Q 013492 356 SKKTFAEEVNAAFRESADNELKGILSVC-DEPLVSVDFRCSDVSSTVDSSLTLV-MGDDMVKVIAWYDN-EWGYSQRVVD 432 (442)
Q Consensus 356 ~k~~~~eeV~~a~~~aa~~~lkgil~~~-~~~~VS~Df~~~~~S~~~d~~~t~~-~~~~~vKv~~WyDN-E~GYs~Rvvd 432 (442)
+++.+.+|+.+.+-..+.+ +-+.... +.|+.-.|-.|.+ .++-+....- +.++.+++..==|| -||=+--.+-
T Consensus 253 ~~~~~~~e~~~~~l~~ap~--v~v~~~~~~~P~~~~d~~g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~ 328 (334)
T COG0136 253 KKDVDPEEIREELLPSAPG--VVVVDNPEDRPQTPLDATGGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVL 328 (334)
T ss_pred cCCCCHHHHHHHHhccCCC--cEEEeCCccCccChhhhcCCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHHHHHH
Confidence 9999999999665433322 2222222 2466667777766 2332222221 23344666555676 3564444333
Q ss_pred HH
Q 013492 433 LA 434 (442)
Q Consensus 433 l~ 434 (442)
++
T Consensus 329 ia 330 (334)
T COG0136 329 IA 330 (334)
T ss_pred HH
Confidence 33
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.97 E-value=1.7e-30 Score=262.91 Aligned_cols=295 Identities=18% Similarity=0.298 Sum_probs=211.7
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
..+||||+| +|.+|+.++|+|.+++ +|++.-+ +++ .|. + +.+..+.+.|+.+.+..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~--~f~v~~l----------~~~--aS~--------~-saGk~~~~~~~~l~v~~ 60 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKET--KFNIAEV----------TLL--SSK--------R-SAGKTVQFKGREIIIQE 60 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCC--CCCcccE----------EEE--ECc--------c-cCCCCeeeCCcceEEEe
Confidence 347999999 9999999999999654 4774111 112 221 2 45677788887666643
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC----CCCCceeeccCccCCCCCCCeEecCCch
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPDEPIISNASCT 221 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk----~d~pt~V~gVN~~~y~~~~~IISnaSCT 221 (442)
-++.. | .++|+||.|+|...+++.+++..++|+ +||+.++. +++|++|+|||.+.++...+||+||+|+
T Consensus 61 -~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~ 133 (347)
T PRK06728 61 -AKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCS 133 (347)
T ss_pred -CCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCH
Confidence 35543 4 379999999999999999999999987 78999873 5889999999999987655799999999
Q ss_pred hhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccch-hhhccchh
Q 013492 222 TNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ-RLLDASHR 300 (442)
Q Consensus 222 Tn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q-~~lD~~h~ 300 (442)
|++++..|++|+++|+ |++..++|+|++||+. +.++..++
T Consensus 134 tt~~~laL~PL~~~~~---------------------------------------i~~v~V~t~qavSGAG~~gv~eL~~ 174 (347)
T PRK06728 134 ALQMVTALQPIRKVFG---------------------------------------LERIIVSTYQAVSGSGIHAIQELKE 174 (347)
T ss_pred HHHHHHHHHHHHHcCC---------------------------------------ccEEEEEEeecccccchhhHHHHHH
Confidence 9999999999999999 9999999999999994 34443111
Q ss_pred hh------------hhh-------hccccceecCC-----CchhHHHH-------Hhc--cccCCceeEEEEeeCcCcce
Q 013492 301 DL------------RRA-------RAAALNIVPTS-----TGAAKAVA-------LVL--PALKGKLNGIALRVPTPNVS 347 (442)
Q Consensus 301 d~------------rr~-------raaa~NIIPts-----tGaakav~-------kVl--PeL~gkl~g~avRVPt~~vs 347 (442)
.. ..+ +.+++|+||+. +|.++++. ||| |.| +++++|+||||.++|
T Consensus 175 qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gH 252 (347)
T PRK06728 175 QAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGH 252 (347)
T ss_pred HHHHHhcCCCCccccccccccccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccE
Confidence 11 123 78999999996 57666665 455 555 599999999999999
Q ss_pred eEEEEEEEccCCCHHHHHHHHHhcccccCCCceeeccCCe-----eeeccCCCCcceEEeCCCCccc-cCCeEEEEEEec
Q 013492 348 VVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL-----VSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYD 421 (442)
Q Consensus 348 ~vdl~v~l~k~~~~eeV~~a~~~aa~~~lkgil~~~~~~~-----VS~Df~~~~~S~~~d~~~t~~~-~~~~vKv~~WyD 421 (442)
...++++++++++.||++++|++++ ||. +.++|- --.|..|.. .+.-+....-. .++.+++..-=|
T Consensus 253 s~sv~ve~~~~~~~~~~~~~l~~~~-----gi~-~~d~p~~~~~ptP~~~~g~~--~v~VGRiR~d~~~~~~l~~w~~~D 324 (347)
T PRK06728 253 SESVYIELEKEATVAEIKEVLFDAP-----GVI-LQDNPSEQLYPMPLYAEGKI--DTFVGRIRKDPDTPNGFHLWIVSD 324 (347)
T ss_pred EEEEEEEECCCCCHHHHHHHHHcCC-----CCE-EeCCCcccCCcCccccCCCC--eEEEeCccccCCCCCeEEEEEEec
Confidence 9999999999999999999998763 333 334431 011222222 13323322211 123456655567
Q ss_pred CC-cchhhhHhHHHHHHhhc
Q 013492 422 NE-WGYSQRVVDLADIVANN 440 (442)
Q Consensus 422 NE-~GYs~Rvvdl~~~~~~~ 440 (442)
|= ||=+---|-+++++.++
T Consensus 325 Nlr~GAA~nav~iaE~l~~~ 344 (347)
T PRK06728 325 NLLKGAAWNSVQIAETMVEE 344 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHc
Confidence 73 55555555566665543
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=6.9e-30 Score=260.21 Aligned_cols=233 Identities=17% Similarity=0.164 Sum_probs=182.2
Q ss_pred eeEEEEc-CChhHHHHHH-HHHhCCCCCcE---EEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEE
Q 013492 69 LKVAING-FGRIGRNFLR-CWHGRKDSPLE---VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr-~l~~~~~~~~e---vvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v 143 (442)
+||||+| +|.+|+.++| ++.+++ |+ ++.. .|. + +++..+.++|+...+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~---f~~~~l~~~---------------ss~--------~-sg~~~~~f~g~~~~v 54 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEND---FDLIEPVFF---------------STS--------Q-AGGAAPSFGGKEGTL 54 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCC---CCcCcEEEe---------------cch--------h-hCCcccccCCCcceE
Confidence 7999999 9999999998 555543 66 3221 221 1 233445677776666
Q ss_pred EecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCCC--C--CeE
Q 013492 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--E--PII 215 (442)
Q Consensus 144 ~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~~--~--~II 215 (442)
+...++.. | .++|+||.|+|..++++.+++..++|++.+||++++ ++++|++|++||++.+... . ++|
T Consensus 55 ~~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iI 130 (369)
T PRK06598 55 QDAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTF 130 (369)
T ss_pred EecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEE
Confidence 54333443 4 379999999999999999999999997668999987 3589999999999987642 2 489
Q ss_pred ecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchh-h
Q 013492 216 SNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR-L 294 (442)
Q Consensus 216 SnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~-~ 294 (442)
+||+|+|++++..|++|++.++ |++..++|||++||+.+ .
T Consensus 131 anPnC~tt~~~laL~PL~~~~~---------------------------------------i~~viVst~qavSGAG~~g 171 (369)
T PRK06598 131 VGGNCTVSLMLMALGGLFKNDL---------------------------------------VEWVSVMTYQAASGAGARN 171 (369)
T ss_pred EcCChHHHHHHHHHHHHHhcCC---------------------------------------ceEEEEEeeecccccCHHH
Confidence 9999999999999999999988 99999999999999943 2
Q ss_pred hccchhhh-------------------------------------hhhhccccceecCC-----CchhHHHHH-------
Q 013492 295 LDASHRDL-------------------------------------RRARAAALNIVPTS-----TGAAKAVAL------- 325 (442)
Q Consensus 295 lD~~h~d~-------------------------------------rr~raaa~NIIPts-----tGaakav~k------- 325 (442)
+|...+.. -.++.+|+|+||+. +|+++++.|
T Consensus 172 ~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrK 251 (369)
T PRK06598 172 MRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNK 251 (369)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHH
Confidence 32211100 12467899999996 577777754
Q ss_pred hc----cccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHhccc
Q 013492 326 VL----PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 373 (442)
Q Consensus 326 Vl----PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~aa~ 373 (442)
|| |.| +++++|+||||.++|...++++++++++.+|++++|+++..
T Consensus 252 IL~~~~~~l--~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~~L~~~~~ 301 (369)
T PRK06598 252 ILGLTKNPI--PVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILAAHNP 301 (369)
T ss_pred HhCCCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhcCC
Confidence 55 455 59999999999999999999999999999999999998543
No 30
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.96 E-value=3.5e-27 Score=236.89 Aligned_cols=239 Identities=22% Similarity=0.276 Sum_probs=176.9
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCC-cceeeecCCcEEECCEEEEEE
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFE-ADVKPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~-~~v~~~~~~~i~v~Gk~I~v~ 144 (442)
|++||+|+| +|.+|+.++|.|.+++ .++|+++... .+..-..+ ...++... +... +. + +.+.+.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p--~~el~~~~~s--~~~~G~~~--~~~~~~~~~~~~~---~~---~--~~~~v~ 67 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP--WFEVTALAAS--ERSAGKTY--GEAVRWQLDGPIP---EE---V--ADMEVV 67 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC--CceEEEEEcC--hhhcCCcc--ccccccccccccc---cc---c--cceEEE
Confidence 568999999 9999999999999764 5899998221 11111111 11111000 0000 00 0 112222
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCC----------
Q 013492 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP---------- 210 (442)
Q Consensus 145 ~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~---------- 210 (442)
..+|+. | .++|+|++|++...+.+.++...++|++ +|+.++ .++.|.+++++|++.|..
T Consensus 68 -~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~ 140 (349)
T PRK08664 68 -STDPEA--V--DDVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGW 140 (349)
T ss_pred -eCCHHH--h--cCCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccC
Confidence 224443 3 2789999999999888888877788885 455544 346789999999987631
Q ss_pred CCCeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeecccc
Q 013492 211 DEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTG 290 (442)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg 290 (442)
..+|||||||+|+|+++.+++|++ || |+++.|||+|++||
T Consensus 141 ~~~iVa~p~C~~t~~~l~l~pL~~-~g---------------------------------------l~~i~v~~~~g~Sg 180 (349)
T PRK08664 141 DGFIVTNPNCSTIGLVLALKPLMD-FG---------------------------------------IERVHVTTMQAISG 180 (349)
T ss_pred CceEEEccCHHHHHHHHHHHHHHH-CC---------------------------------------CcEEEEEEEecccc
Confidence 125999999999999999999999 99 99999999999999
Q ss_pred chhhhccchhhhhhhhccccceecCCCch--------hHHHHHh----ccccCCceeEEEEeeCcCcceeEEEEEEEccC
Q 013492 291 DQRLLDASHRDLRRARAAALNIVPTSTGA--------AKAVALV----LPALKGKLNGIALRVPTPNVSVVDLVVQVSKK 358 (442)
Q Consensus 291 ~Q~~lD~~h~d~rr~raaa~NIIPtstGa--------akav~kV----lPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~ 358 (442)
+++-.. ..+.+++|++|+..+. .|.++.+ +|.++.+++++++|||++++|+.+++++++++
T Consensus 181 aG~~~~-------~~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~ 253 (349)
T PRK08664 181 AGYPGV-------PSMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKED 253 (349)
T ss_pred CCcccc-------hhhhhhcCcccccCchhhhhhHHHHHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCC
Confidence 986432 2456899999999875 3555444 66678889999999999999999999999999
Q ss_pred CCHHHHHHHHHhccc
Q 013492 359 TFAEEVNAAFRESAD 373 (442)
Q Consensus 359 ~~~eeV~~a~~~aa~ 373 (442)
++.+|++++|+++.+
T Consensus 254 ~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 254 VDPEEIREALESFKG 268 (349)
T ss_pred CCHHHHHHHHHhccC
Confidence 999999999998766
No 31
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.95 E-value=4.2e-27 Score=235.65 Aligned_cols=254 Identities=22% Similarity=0.272 Sum_probs=189.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCccccc--CCcceeeecCCcEEECCEEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGI--FEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~--f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
+||||+| +|.+|+.+++.+.+++ .++|+++.+.. +.....+ ...|.. |.. .. ..+ ....+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~--~~~g~~~--~~~~~~~~~~~-~~----~~~----~~~~~-~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASP--RSAGKRY--GEAVKWIEPGD-MP----EYV----RDLPI-V 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEECh--hhcCCcc--hhhccccccCC-Cc----ccc----ceeEE-E
Confidence 5899999 8999999999998874 48999986531 1110101 110100 000 00 000 11222 2
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCC---------CC
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP---------DE 212 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~---------~~ 212 (442)
..++. .| .++|+|+.|++..++.+.++...++|++ +|+.++ +++.|.+++++|++.|.. ..
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~ 138 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKG 138 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCc
Confidence 22332 23 3799999999999999999888888885 455554 356799999999987752 12
Q ss_pred CeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccch
Q 013492 213 PIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ 292 (442)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q 292 (442)
+||+||+|+|+|+++.+++|+++|+ |+++.|||+|++||++
T Consensus 139 ~iVanPgC~~t~~~lal~pL~~~~~---------------------------------------i~~v~v~t~~gvSgaG 179 (341)
T TIGR00978 139 FIVTNPNCTTAGLTLALKPLIDAFG---------------------------------------IKKVHVTTMQAVSGAG 179 (341)
T ss_pred cEEeCCCcHHHHHHHHHHHHHHhCC---------------------------------------CcEEEEEEEEccCCCC
Confidence 5999999999999999999999999 9999999999999998
Q ss_pred hhhccchhhhhhhhccccceecCCCchh----HHHHHhccccCC--------ceeEEEEeeCcCcceeEEEEEEEccCCC
Q 013492 293 RLLDASHRDLRRARAAALNIVPTSTGAA----KAVALVLPALKG--------KLNGIALRVPTPNVSVVDLVVQVSKKTF 360 (442)
Q Consensus 293 ~~lD~~h~d~rr~raaa~NIIPtstGaa----kav~kVlPeL~g--------kl~g~avRVPt~~vs~vdl~v~l~k~~~ 360 (442)
+.... + +.+++|++|...+.. .++.++++.+.| +++.+++|||+.++|+.+++++++++++
T Consensus 180 ~~~~~-~------~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~ 252 (341)
T TIGR00978 180 YPGVP-S------MDILDNIIPHIGGEEEKIERETRKILGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFD 252 (341)
T ss_pred CCCCc-c------chhhCCeEecCcHHHHHHHHHHHHHhCccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCC
Confidence 75432 2 347999999987652 456788887744 4899999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCceeeccCCeeee
Q 013492 361 AEEVNAAFRESADNELKGILSVCDEPLVSV 390 (442)
Q Consensus 361 ~eeV~~a~~~aa~~~lkgil~~~~~~~VS~ 390 (442)
.||++++|+++.+.++...|.-+.+|+|-+
T Consensus 253 ~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 253 IEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred HHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 999999999988776665666666777655
No 32
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.94 E-value=1.2e-25 Score=226.74 Aligned_cols=233 Identities=21% Similarity=0.263 Sum_probs=182.5
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
+++||||+| +|.+|+.++|+|.++..+.++|+.+.. ++ ..+..+.+.|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS-------------~~-----------saG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS-------------EE-----------SAGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc-------------cC-----------cCCceEEECCcceEEE-
Confidence 468999999 999999999999997545677765542 11 3456666777655554
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCC--CCCeEecCC
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNAS 219 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~--~~~IISnaS 219 (442)
+++++.|. ++|+||.|+|...+++.++...++|+ +||+.++ ++++|..++|||.+.++. ..+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 45567775 79999999999999999999989888 6899987 357899999999955432 367999999
Q ss_pred chhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchh-hhccc
Q 013492 220 CTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR-LLDAS 298 (442)
Q Consensus 220 CTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~-~lD~~ 298 (442)
|+|++++..|+||+++|+ |++..|+|++++||..+ ..+..
T Consensus 132 C~~t~~~laL~PL~~~~~---------------------------------------i~~viV~t~qgvSGAG~~~~~~L 172 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAG---------------------------------------LSRLHVTNLLSASAHGKAAVDAL 172 (336)
T ss_pred HHHHHHHHHHHHHHHhCC---------------------------------------CeEEEEEeeccccccChhhHHHH
Confidence 999999999999999999 99999999999999964 22221
Q ss_pred hhh------------hhhhhccccceecCC---CchhH-------HHHHhc--cccCCceeEEEEeeCcCcceeEEEEEE
Q 013492 299 HRD------------LRRARAAALNIVPTS---TGAAK-------AVALVL--PALKGKLNGIALRVPTPNVSVVDLVVQ 354 (442)
Q Consensus 299 h~d------------~rr~raaa~NIIPts---tGaak-------av~kVl--PeL~gkl~g~avRVPt~~vs~vdl~v~ 354 (442)
++. ...++..++|++|.. .|... ++.++| |.+ +++.+++|||+++||+..++++
T Consensus 173 ~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh~~~Ei~kiL~~~~~--~vs~t~~~vPv~rG~~~tv~v~ 250 (336)
T PRK08040 173 AGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERRLVDQVRKILQDEGL--PISVSCVQSPVFYGHAQMVHFE 250 (336)
T ss_pred HHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhhhHHHHHHHhCCCCC--eEEEEeEEecchhcEEEEEEEE
Confidence 110 123445899999993 22322 334444 233 3889999999999999999999
Q ss_pred EccCCCHHHHHHHHHhc
Q 013492 355 VSKKTFAEEVNAAFRES 371 (442)
Q Consensus 355 l~k~~~~eeV~~a~~~a 371 (442)
++++++.+|+.++|+++
T Consensus 251 ~~~~v~~~~i~~~l~~~ 267 (336)
T PRK08040 251 ALRPLAAEEARDALEQG 267 (336)
T ss_pred ECCCCCHHHHHHHHhcC
Confidence 99999999999999984
No 33
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.93 E-value=3.6e-25 Score=223.45 Aligned_cols=235 Identities=17% Similarity=0.248 Sum_probs=181.7
Q ss_pred ccCceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEE
Q 013492 65 AQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (442)
Q Consensus 65 ~~~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v 143 (442)
+.+++||+|.| +|.+|+.++|+|.+++.+.++++.+... + ..+..+.+.|+.+.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-----------------------r-saGk~~~~~~~~~~v 59 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-----------------------R-SAGKKVTFEGRDYTV 59 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-----------------------C-CCCCeeeecCceeEE
Confidence 44668999999 9999999999999865455776555321 0 233444445544444
Q ss_pred EecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCCC------CC
Q 013492 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD------EP 213 (442)
Q Consensus 144 ~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~~------~~ 213 (442)
. .-++.. | .++|+||.|+|...+++.+++..++|+ +||+.++ ++++|.+++|+|.+.++.. .+
T Consensus 60 ~-~~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 E-ELTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred E-eCCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 3 223322 3 379999999999999999998888888 6899987 3578999999999987653 24
Q ss_pred eEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchh
Q 013492 214 IISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR 293 (442)
Q Consensus 214 IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~ 293 (442)
||+||+|+|++++..|++|+++|+ |++..++|++++||..+
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~~---------------------------------------i~~vvv~t~~~vSGAG~ 173 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHAK---------------------------------------VKRMVVSTYQAASGAGA 173 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcCC---------------------------------------eeEEEEEeeecccccCH
Confidence 999999999999999999999999 99999999999999954
Q ss_pred -hhccchh------------hhhhhhccccceecCC-----CchhHHHHH-------hc--cccCCceeEEEEeeCcCcc
Q 013492 294 -LLDASHR------------DLRRARAAALNIVPTS-----TGAAKAVAL-------VL--PALKGKLNGIALRVPTPNV 346 (442)
Q Consensus 294 -~lD~~h~------------d~rr~raaa~NIIPts-----tGaakav~k-------Vl--PeL~gkl~g~avRVPt~~v 346 (442)
.++..|+ --+.....++|++|+. +|.++.+.+ ++ |.+ +++.+++|||+.+|
T Consensus 174 ~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~--~v~~t~~~vPv~rG 251 (344)
T PLN02383 174 AAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDV--KVTATCIRVPVMRA 251 (344)
T ss_pred HHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCC--eEEEEeEecCcccc
Confidence 3343331 1134567899999995 355544444 43 333 49999999999999
Q ss_pred eeEEEEEEEccCCCHHHHHHHHHhc
Q 013492 347 SVVDLVVQVSKKTFAEEVNAAFRES 371 (442)
Q Consensus 347 s~vdl~v~l~k~~~~eeV~~a~~~a 371 (442)
|...++++++++++.||+.++++++
T Consensus 252 ~~~sv~v~~~~~v~~~~~~~~l~~~ 276 (344)
T PLN02383 252 HAESINLQFEKPLDEATAREILASA 276 (344)
T ss_pred EEEEEEEEECCCCCHHHHHHHHhcC
Confidence 9999999999999999999999984
No 34
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.93 E-value=1.7e-24 Score=218.10 Aligned_cols=234 Identities=20% Similarity=0.249 Sum_probs=181.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||||.| +|.+|+.++|+|.++..+.++++.+... + ..+..|.+.|+...+.. .
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~---~---------------------~aG~~l~~~~~~l~~~~-~ 59 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS---E---------------------SAGHSVPFAGKNLRVRE-V 59 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc---c---------------------cCCCeeccCCcceEEee-C
Confidence 7999999 9999999999999765455776666431 1 12344445554444432 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC---CCCCceeeccCccCCCC--CCCeEecCCchh
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK---GDIPTYVVGVNADAYKP--DEPIISNASCTT 222 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk---~d~pt~V~gVN~~~y~~--~~~IISnaSCTT 222 (442)
++ ..| .++|+||.|+|...+++.++..+++|+ .||+.++. +++|..|+|||.+.++. ..+||+||+|+|
T Consensus 60 ~~--~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~ 133 (336)
T PRK05671 60 DS--FDF--SQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSASA 133 (336)
T ss_pred Ch--HHh--cCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcHH
Confidence 22 235 379999999999999999998889988 57998873 47899999999998764 257999999999
Q ss_pred hhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccchhh-hcc--ch
Q 013492 223 NCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRL-LDA--SH 299 (442)
Q Consensus 223 n~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q~~-lD~--~h 299 (442)
++++..|++|++.|+ +.+..++|++++||..+. .+. .+
T Consensus 134 t~~~laL~PL~~~~~---------------------------------------~~~v~v~t~~~vSGaG~~~~~~L~~~ 174 (336)
T PRK05671 134 VALAVALAPLKGLLD---------------------------------------IQRVQVTACLAVSSLGREGVSELARQ 174 (336)
T ss_pred HHHHHHHHHHHHhcC---------------------------------------CCEEEEEEeecCcccCcccchHHHHH
Confidence 999999999998899 889999999999999542 222 11
Q ss_pred -hhh---------hhhhccccceecCC-----CchhHHHHHhcccc-------CCceeEEEEeeCcCcceeEEEEEEEcc
Q 013492 300 -RDL---------RRARAAALNIVPTS-----TGAAKAVALVLPAL-------KGKLNGIALRVPTPNVSVVDLVVQVSK 357 (442)
Q Consensus 300 -~d~---------rr~raaa~NIIPts-----tGaakav~kVlPeL-------~gkl~g~avRVPt~~vs~vdl~v~l~k 357 (442)
..+ ...+.+++|++|.. +|+.+++.+..||+ +-+++.+++|||+++||...+++++++
T Consensus 175 ~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~ 254 (336)
T PRK05671 175 TAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAA 254 (336)
T ss_pred HHHHhCCCCccccccccccccccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECC
Confidence 100 23567899999985 37766666665553 224889999999999999999999999
Q ss_pred CCCHHHHHHHHHhcc
Q 013492 358 KTFAEEVNAAFRESA 372 (442)
Q Consensus 358 ~~~~eeV~~a~~~aa 372 (442)
+++.+|+++++++++
T Consensus 255 ~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 255 PVDLAAVNAALEAAP 269 (336)
T ss_pred CCCHHHHHHHHhCCC
Confidence 999999999999543
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.88 E-value=5.1e-21 Score=192.42 Aligned_cols=236 Identities=19% Similarity=0.184 Sum_probs=169.5
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
|++||||.| +|.+|+.+++.|.+++ .++++++.+..... ..+ ...|+.+. +.....+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p--~~elv~v~~~~~~g---~~l--~~~~~~~~--------------~~~~~~~~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP--EVEIVAVTSRSSAG---KPL--SDVHPHLR--------------GLVDLVLE 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC--CceEEEEECccccC---cch--HHhCcccc--------------cccCceee
Confidence 458999999 7999999999998764 58999887621110 001 01111110 00000111
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC----C-C------------------CCceeec
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----G-D------------------IPTYVVG 202 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk----~-d------------------~pt~V~g 202 (442)
+-+. ..| .++|+|+.||+.....+.+...+++|+ .||+.++. + + .|..++|
T Consensus 60 ~~~~--~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 PLDP--EIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred cCCH--HHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 1111 123 368999999999999999988888776 78999863 2 3 6899999
Q ss_pred cCccCCCCCCCeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhcccccccccccccccccee--eE
Q 013492 203 VNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGII--KG 280 (442)
Q Consensus 203 VN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~--~g 280 (442)
+|.+.++. .+||+||+|+|++++..|++|++.++ |. +.
T Consensus 134 ~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~---------------------------------------i~~~~i 173 (343)
T PRK00436 134 LNREEIKG-ARLIANPGCYPTASLLALAPLLKAGL---------------------------------------IDPDSI 173 (343)
T ss_pred cCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCC---------------------------------------CCCCCE
Confidence 99998875 58999999999999999999999877 66 78
Q ss_pred EEEEeeccccchh-hhccchhhhhhhhccccceecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCC
Q 013492 281 TMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKT 359 (442)
Q Consensus 281 ~mTTiha~Tg~Q~-~lD~~h~d~rr~raaa~NIIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~ 359 (442)
.++|++++||..+ ..+..+...+...-.++|++|+. ...++.+.+-.+.++++.+++|||+..||+..+++++++++
T Consensus 174 ~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~--h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~ 251 (343)
T PRK00436 174 IIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHR--HTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPV 251 (343)
T ss_pred EEEEEEecccCCCCccccccchhhcCCeeecccCCCC--CHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCC
Confidence 9999999999965 45544322222222366666654 23344444433322699999999999999999999999999
Q ss_pred CHHHHHHHHHhc
Q 013492 360 FAEEVNAAFRES 371 (442)
Q Consensus 360 ~~eeV~~a~~~a 371 (442)
+.||+++++++.
T Consensus 252 ~~~~~~~~~~~~ 263 (343)
T PRK00436 252 TAEDVRAAYEEF 263 (343)
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.84 E-value=9e-20 Score=183.80 Aligned_cols=234 Identities=18% Similarity=0.159 Sum_probs=164.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCE-EEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK-VIQVVSN 146 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk-~I~v~~~ 146 (442)
+||||.| +|.+|+.++|.|.+++ .++++++-+... .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP--~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP--EVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC--CceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 4899999 7999999999999774 589987743211 000000 11111110 10 0111 11
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC----C-------------------CCCceeecc
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----G-------------------DIPTYVVGV 203 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk----~-------------------d~pt~V~gV 203 (442)
.++.+ |.+ ++|+||.|+|...+++.+...+++|+ .||+.++. + +.|..++|+
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12222 222 79999999999999999998888885 67888762 2 478999999
Q ss_pred CccCCCCCCCeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhcccccccccccccccccee--eEE
Q 013492 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGII--KGT 281 (442)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~--~g~ 281 (442)
|.+.++. .+||+||+|.|+++...|+||+++++ |. +..
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~---------------------------------------i~~~~i~ 174 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEGL---------------------------------------IDPTSII 174 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCC---------------------------------------CCCCcEE
Confidence 9988864 67999999999999999999999987 54 578
Q ss_pred EEEeeccccchh-hhccchhhhhhhhccccceecCCCch---hHHHHHhcccc---CCceeEEEEeeCcCcceeEEEEEE
Q 013492 282 MTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTSTGA---AKAVALVLPAL---KGKLNGIALRVPTPNVSVVDLVVQ 354 (442)
Q Consensus 282 mTTiha~Tg~Q~-~lD~~h~d~rr~raaa~NIIPtstGa---akav~kVlPeL---~gkl~g~avRVPt~~vs~vdl~v~ 354 (442)
++|++++||..+ ..+..|...+ ..|+.|..-+. ..++.+.+-.+ +-+++.+++|||+.+||+..+.++
T Consensus 175 v~~~sgvSGaG~~~~~~~~~~~~-----~~~~~~y~~~~h~h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~ 249 (346)
T TIGR01850 175 VDAKSGVSGAGRKASPANHFPEV-----NENLRPYKVTGHRHTPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAK 249 (346)
T ss_pred EEEEEECcccCcCccccccchhh-----cCCeeeeccCCcCcHHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEe
Confidence 999999999976 4444442222 24555553322 22233322211 124889999999999999999999
Q ss_pred EccCCCHHHHHHHHHhccc
Q 013492 355 VSKKTFAEEVNAAFRESAD 373 (442)
Q Consensus 355 l~k~~~~eeV~~a~~~aa~ 373 (442)
++++++.||+.+++++.-+
T Consensus 250 ~~~~~~~~~~~~~~~~~y~ 268 (346)
T TIGR01850 250 LKDGLTEEDLRAAYEEFYA 268 (346)
T ss_pred cCCCCCHHHHHHHHHHHhC
Confidence 9999999999999997543
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.83 E-value=3.1e-19 Score=182.78 Aligned_cols=242 Identities=12% Similarity=0.112 Sum_probs=168.4
Q ss_pred cCceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEE
Q 013492 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 66 ~~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~ 144 (442)
.+++||+|.| +|.+|+.++|.|.+++ .++|+.+... +..-..+ ...+ ..+.+....-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~---~saG~~i--~~~~--------------~~l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD---RKAGQSF--GSVF--------------PHLITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh---hhcCCCc--hhhC--------------ccccCccccce
Confidence 5778999999 9999999999999985 5898877631 1000000 0000 00111111111
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC----CC--------CCceeeccCccC-CC--
Q 013492 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GD--------IPTYVVGVNADA-YK-- 209 (442)
Q Consensus 145 ~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk----~d--------~pt~V~gVN~~~-y~-- 209 (442)
..-++. .| .++|+||.|+|...+++.++. +++|+ +||+.++. ++ .|..++++|.+. |.
T Consensus 95 ~~~~~~--~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 VAVKDA--DF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred ecCCHH--Hh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 111222 24 379999999999888888887 46664 67888773 34 688899999885 43
Q ss_pred -------CCCCeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccce--eeE
Q 013492 210 -------PDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGI--IKG 280 (442)
Q Consensus 210 -------~~~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I--~~g 280 (442)
...+||+||+|.|++++..|++|+++++ | .+.
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~---------------------------------------i~~~~i 208 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGL---------------------------------------IEPDNI 208 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCC---------------------------------------CCCceE
Confidence 2357999999999999999999999998 7 678
Q ss_pred EEEEeeccccchhhh-ccch-hhhh-hhhccccceecCCCchhHHHHHhc-cccCCceeEEEEeeCcCcceeEEEEEEEc
Q 013492 281 TMTTTHSYTGDQRLL-DASH-RDLR-RARAAALNIVPTSTGAAKAVALVL-PALKGKLNGIALRVPTPNVSVVDLVVQVS 356 (442)
Q Consensus 281 ~mTTiha~Tg~Q~~l-D~~h-~d~r-r~raaa~NIIPtstGaakav~kVl-PeL~gkl~g~avRVPt~~vs~vdl~v~l~ 356 (442)
.++|++++||..+.. +..| .+.. .-|+.++|..|+..---..+.+++ +.+ +++.+++|||+.+||+..+.++++
T Consensus 209 iv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~ 286 (381)
T PLN02968 209 IIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYA 286 (381)
T ss_pred EEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeC
Confidence 999999999996543 3322 2211 135667777777522112222332 444 499999999999999999999999
Q ss_pred cCCCHHHHHHHHHhc-ccccC
Q 013492 357 KKTFAEEVNAAFRES-ADNEL 376 (442)
Q Consensus 357 k~~~~eeV~~a~~~a-a~~~l 376 (442)
++++.||+.++|++. +..++
T Consensus 287 ~~~~~~~v~~~~~~~y~~~~f 307 (381)
T PLN02968 287 PGVTAEDLHQHLKERYEGEEF 307 (381)
T ss_pred CCCCHHHHHHHHHHhCCCCCE
Confidence 999999999999995 44343
No 38
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.75 E-value=7.3e-17 Score=161.97 Aligned_cols=216 Identities=14% Similarity=0.097 Sum_probs=157.3
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
||+||||.| +|-+|+.++|.|.+++ .++++++.... +..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~~--------------------------~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEAK--------------------------RKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecCC--------------------------CCcc-----------
Confidence 689999999 9999999999999986 58987775320 0000
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCC--CCCCeEecCC
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--PDEPIISNAS 219 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~--~~~~IISnaS 219 (442)
.+....|. ++|+||.|++...+++.+....++|+ +||+.++ +++.|..++|+|++..+ ...++|+||.
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 01111233 68999999999999999998888888 6899987 35789999999976433 2467999999
Q ss_pred chhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccc---cchh-hh
Q 013492 220 CTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYT---GDQR-LL 295 (442)
Q Consensus 220 CTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~T---g~Q~-~l 295 (442)
|.+++++..|+||+++.. |.+...+++++.| |..+ ..
T Consensus 116 C~~Ta~~laL~PL~~~~l---------------------------------------i~~~~~i~i~a~SG~SGAG~~~~ 156 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGL---------------------------------------LPADYPVSINAVSGYSGGGKAMI 156 (313)
T ss_pred cHHHHHHHHHHHHHHcCC---------------------------------------cccCceEEEEEccccccCCccch
Confidence 999999999999999644 4444467888885 5543 33
Q ss_pred ccch--hhhhhhhccccceecCCCc-h---hHHHHHhcccc-CCceeEEEEeeCcCcceeEEEEEEE---ccCCCHHHHH
Q 013492 296 DASH--RDLRRARAAALNIVPTSTG-A---AKAVALVLPAL-KGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVN 365 (442)
Q Consensus 296 D~~h--~d~rr~raaa~NIIPtstG-a---akav~kVlPeL-~gkl~g~avRVPt~~vs~vdl~v~l---~k~~~~eeV~ 365 (442)
+..| -. -...|++|..-+ . ..++.+.+-.+ +..++- .-+|+.+|++..+.+++ +++++.+|+.
T Consensus 157 ~~~~~~~~-----~~~~n~~~Y~~~~~HrH~pEi~~~l~~~~~~~F~P--hl~p~~rGil~Ti~~~~~~~~~~~~~~~i~ 229 (313)
T PRK11863 157 AAYEAAPD-----GKAPAFRLYGLGLAHKHLPEMQAHAGLARRPIFTP--SVGNFRQGMLVTVPLHLRLLPGGPTAEDLH 229 (313)
T ss_pred HHHhhhhh-----hhccCeeeccCCcCCcchHHHHHHhccccCcEEEe--eEccccCcEEEEEEEEecccCCCCCHHHHH
Confidence 3322 11 146799999866 3 33444444322 122333 34799999999999997 8889999999
Q ss_pred HHHHhccc
Q 013492 366 AAFRESAD 373 (442)
Q Consensus 366 ~a~~~aa~ 373 (442)
+++++.-+
T Consensus 230 ~~~~~~Y~ 237 (313)
T PRK11863 230 AALADHYA 237 (313)
T ss_pred HHHHHHcC
Confidence 99998643
No 39
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.71 E-value=2.2e-17 Score=162.29 Aligned_cols=238 Identities=19% Similarity=0.228 Sum_probs=161.3
Q ss_pred eEE-EEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 70 KVA-ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 70 kVa-InG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
|+| |.| +|.+|++|+-.|.+++ .|++.....+ -+ +.--+|.- -|.|+.+.- .-+ .-..+.| .+-
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgAS--~R--SAGK~ya~-a~~wkqt~~-lp~-----~~~e~~V-~ec 70 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGAS--KR--SAGKRYAF-AGNWKQTDL-LPE-----SAHEYTV-EEC 70 (361)
T ss_pred cccceeeccchhHHHHHHHhccCC--cceeeeeccc--cc--ccCCceEe-cccchhccc-ccc-----hhhhhhH-hhc
Confidence 566 999 9999999999998885 4554333211 00 01111111 133332211 000 0012222 233
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCCC----------C-C
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP----------D-E 212 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~~----------~-~ 212 (442)
++..| .++||||.+.+.-...|.-....++|- +|+|+.. .+++|++|++||+++++. . .
T Consensus 71 ~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G 144 (361)
T KOG4777|consen 71 TADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKG 144 (361)
T ss_pred Chhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCc
Confidence 55554 389999999998888877777777777 8999876 257899999999999762 1 3
Q ss_pred CeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeeccccch
Q 013492 213 PIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ 292 (442)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg~Q 292 (442)
-||.|+||+|..+...+|+||++|| ||.+-.++|||+++|+.
T Consensus 145 ~iI~nsNCSTa~~v~plkpL~~~fg--------------------------------------pi~~~~v~t~QAiSGAG 186 (361)
T KOG4777|consen 145 AIIANSNCSTAICVMPLKPLHHHFG--------------------------------------PIKRMVVSTYQAISGAG 186 (361)
T ss_pred eEEecCCCCeeeEEeechhHHhhcc--------------------------------------chhhhhhhhhhhhccCC
Confidence 4999999999999999999999999 38899999999999985
Q ss_pred hh-hccchhhhhhhhccccceecCCCchh----HHHHHhc-----cccC------CceeEEEEeeCcCcceeEEEEEEEc
Q 013492 293 RL-LDASHRDLRRARAAALNIVPTSTGAA----KAVALVL-----PALK------GKLNGIALRVPTPNVSVVDLVVQVS 356 (442)
Q Consensus 293 ~~-lD~~h~d~rr~raaa~NIIPtstGaa----kav~kVl-----PeL~------gkl~g~avRVPt~~vs~vdl~v~l~ 356 (442)
-. .-+.- | +..||+|...|.- -+..++| |-+. -++...|-|||+.++|+..+.+++.
T Consensus 187 ~apgv~~v-d------ildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~ 259 (361)
T KOG4777|consen 187 AAPGVELV-D------ILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFR 259 (361)
T ss_pred cCCCchHH-H------HHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEee
Confidence 31 11111 1 3458999876542 1123343 1111 2456789999999999999999998
Q ss_pred cC--CCHHHHHHHHHhcc
Q 013492 357 KK--TFAEEVNAAFRESA 372 (442)
Q Consensus 357 k~--~~~eeV~~a~~~aa 372 (442)
-+ .+.+|+.+.+.+..
T Consensus 260 ~~~~pa~~qv~~~l~eyv 277 (361)
T KOG4777|consen 260 VPVMPAHAQVVNLLFEYV 277 (361)
T ss_pred cCCCCcHHHHHHHHHhcc
Confidence 54 36899999998865
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.62 E-value=2.1e-14 Score=144.27 Aligned_cols=217 Identities=13% Similarity=0.086 Sum_probs=156.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
.||+|.| .|-.|..++|.|..++ ++|++.+..... ++ ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--~~el~~l~s~~~---------~~-----------------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--DIELLSIAPDRR---------KD-----------------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--CeEEEEEecccc---------cC-----------------------------cC
Confidence 4899999 9999999999999985 599988864200 00 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC----CCCCCceeeccCccCCC--CCCCeEecCCch
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--PDEPIISNASCT 221 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps----k~d~pt~V~gVN~~~y~--~~~~IISnaSCT 221 (442)
++..+ + .++|+||.|++...+++.++...++|+ +||+.++ +++.|..++|+|.+..+ ...++|+||.|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 268999999999999999988888888 6799886 35789999999876433 246899999999
Q ss_pred hhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeecccc---chh-hhcc
Q 013492 222 TNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHSYTG---DQR-LLDA 297 (442)
Q Consensus 222 Tn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha~Tg---~Q~-~lD~ 297 (442)
+++++..|+||+++.. |.+...+++++.|| ..+ ..+.
T Consensus 117 aTa~~LaL~PL~~~~l---------------------------------------i~~~~~~~~~a~SG~SGAGr~~~~~ 157 (310)
T TIGR01851 117 PTGFIALMRPLVEAGI---------------------------------------LPADFPITINAVSGYSGGGKAMIAD 157 (310)
T ss_pred HHHHHHHHHHHHHcCC---------------------------------------ccccceEEEEeccccCccChhhhHH
Confidence 9999999999999744 55555689999987 433 3333
Q ss_pred chhhhhhhhccccceecCCCc-h---hHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEE---ccCCCHHHHHHHHHh
Q 013492 298 SHRDLRRARAAALNIVPTSTG-A---AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRE 370 (442)
Q Consensus 298 ~h~d~rr~raaa~NIIPtstG-a---akav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l---~k~~~~eeV~~a~~~ 370 (442)
.|+..+.. ....|+-|..-+ . ..++...+-.+ -++.=+..-+|...|=+..+.+++ +++++.+|+.+++++
T Consensus 158 l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~ 235 (310)
T TIGR01851 158 YEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-LPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALAD 235 (310)
T ss_pred hhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-CCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHH
Confidence 33211100 124567777644 2 23444433221 236667778999999999999999 888999999999998
Q ss_pred c
Q 013492 371 S 371 (442)
Q Consensus 371 a 371 (442)
+
T Consensus 236 ~ 236 (310)
T TIGR01851 236 Y 236 (310)
T ss_pred H
Confidence 5
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.39 E-value=1.3e-12 Score=131.05 Aligned_cols=142 Identities=25% Similarity=0.229 Sum_probs=100.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
++||||+|+|.||+.++..+... +.++++++.|. +++.- .+++...+|.-. ..+|-. .++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~--gla~A~~~Gi~~-----------~~~~ie-~LL~-- 64 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESD--GLARARRLGVAT-----------SAEGID-GLLA-- 64 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhH--HHHHHHHcCCCc-----------ccCCHH-HHHh--
Confidence 68999999999999988887764 45999999986 23210 111111123100 001100 0111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCC--CCCeEecCCchhhhh
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~--~~~IISnaSCTTn~L 225 (442)
+| .|. ++|+||++||.....+.+.+.+++|+ .+|+..+.-..|++||+||.+.... ..++|+|++|+|+.+
T Consensus 65 ~~---~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 65 MP---EFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred Cc---CCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 11 233 68999999999999999999999997 6677655446899999999988754 358999999999999
Q ss_pred HHHHHHHHHh
Q 013492 226 APFVKVLDQK 235 (442)
Q Consensus 226 ap~lkvL~~~ 235 (442)
+..++++++.
T Consensus 138 v~Al~~v~~~ 147 (302)
T PRK08300 138 VAAVSRVAPV 147 (302)
T ss_pred HHHhcccCcC
Confidence 9999998744
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.15 E-value=2.6e-10 Score=113.58 Aligned_cols=141 Identities=23% Similarity=0.246 Sum_probs=97.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
|+||||+|.|+||+..+..+... +.+++++|.|. +++... +++...+|. ....+|.. .++.
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~--la~A~~~Gi-----------~~~~~~~e-~ll~-- 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDG--LARARELGV-----------KTSAEGVD-GLLA-- 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHH--HHHHHHCCC-----------CEEECCHH-HHhc--
Confidence 47999999999999987777654 35999999985 222100 000111221 01111110 0111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCC--CCCeEecCCchhhhh
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~--~~~IISnaSCTTn~L 225 (442)
+ .++|+|++||+.....+.+.+.+++|. .||+..+.-..|++|+.||.+.... ..++|++++|.|+.+
T Consensus 62 ~--------~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 62 N--------PDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred C--------CCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 1 268999999999999999999999987 4455443336799999999888653 468999999999999
Q ss_pred HHHHHHHHHhhc
Q 013492 226 APFVKVLDQKFG 237 (442)
Q Consensus 226 ap~lkvL~~~fG 237 (442)
+..++.+++.+.
T Consensus 132 ~~al~r~~d~~~ 143 (285)
T TIGR03215 132 VAAISRVAPVHY 143 (285)
T ss_pred HHHHHHhhcccc
Confidence 998888887665
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.77 E-value=2.3e-07 Score=94.97 Aligned_cols=241 Identities=17% Similarity=0.170 Sum_probs=148.5
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
|++||+|.| .|-.|-+++|.|.+++ ++|+..+... +. .-.++...|..+.+.+. +. ++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~ss~---~~--~g~~~~~~~p~l~g~~~------l~--------~~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILISSR---ER--AGKPVSDVHPNLRGLVD------LP--------FQ 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEeech---hh--cCCchHHhCcccccccc------cc--------cc
Confidence 568999999 9999999999999986 4896655532 10 00000111111111100 11 12
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCC----------------C----Cceeec---
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD----------------I----PTYVVG--- 202 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d----------------~----pt~V~g--- 202 (442)
..++..+ ...++|+||-|++..++++.+...++.|.+ ||+.+.+-- . .--|||
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 2344444 234689999999999999999999998885 788875310 0 123333
Q ss_pred cCccCCCCCCCeEecCCchhhhhHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEE
Q 013492 203 VNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTM 282 (442)
Q Consensus 203 VN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~m 282 (442)
.|.++++ .-+.|+||-|-.+|..-.++||-+. | |.|.-.+ .++
T Consensus 136 l~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~-~--------------------------------ll~~~~~---~iv 178 (349)
T COG0002 136 LHREKIR-GAKLIANPGCYPTAAILALAPLVKA-G--------------------------------LLDPDSP---PIV 178 (349)
T ss_pred cCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc-C--------------------------------CcCCCCc---eEE
Confidence 3333333 2579999999999999999999765 2 0111110 123
Q ss_pred EEeeccccchhhhc-cchhhhhhhhccccceecCCC---chhHHHHHhccccCC---ceeEEEEeeCcCcceeEEEEEEE
Q 013492 283 TTTHSYTGDQRLLD-ASHRDLRRARAAALNIVPTST---GAAKAVALVLPALKG---KLNGIALRVPTPNVSVVDLVVQV 355 (442)
Q Consensus 283 TTiha~Tg~Q~~lD-~~h~d~rr~raaa~NIIPtst---Gaakav~kVlPeL~g---kl~g~avRVPt~~vs~vdl~v~l 355 (442)
...--+||..+-.- .+|-. ....|+.|..- -+..++..-+..|.+ .+.=+..-+|...|=+..+.+.+
T Consensus 179 dakSG~SGaGrk~s~~~~~~-----e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l 253 (349)
T COG0002 179 DAKSGVSGAGRKASVKNHFP-----EVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKL 253 (349)
T ss_pred EEeEecCcCCCCccccccch-----hhccccccccccccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEec
Confidence 33334566654322 22211 12347777752 223444444554443 24445566899999999999999
Q ss_pred ccCCCHHHHHHHHHhcccc
Q 013492 356 SKKTFAEEVNAAFRESADN 374 (442)
Q Consensus 356 ~k~~~~eeV~~a~~~aa~~ 374 (442)
++.++.+|+.+++++.=++
T Consensus 254 ~~~~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 254 KDLVTLEELHAAYEEFYAG 272 (349)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 9999999999999987543
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.74 E-value=1.2e-08 Score=88.13 Aligned_cols=113 Identities=26% Similarity=0.301 Sum_probs=77.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
||||.| +|.+|+.++|.|.+++ +++++.+-.... +.-.++...++.+. ....+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~~~~~~~----~~g~~~~~~~~~~~-------------~~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP--DFELVALVSSSR----SAGKPLSEVFPHPK-------------GFEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TEEEEEEEESTT----TTTSBHHHTTGGGT-------------TTEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CccEEEeeeecc----ccCCeeehhccccc-------------cccceeEee-cc
Confidence 799999 9999999999999974 599998876422 01111222221110 011222322 23
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCC----CCCCceeeccCccCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAY 208 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk----~d~pt~V~gVN~~~y 208 (442)
+..+ .++|+||.|++...+++.+.+.++.|+ .||+.++. ++.|+.++++|.+.+
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i 118 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQI 118 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHH
Confidence 3333 389999999999999999999999999 67998873 478999999998765
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=98.36 E-value=1.8e-06 Score=80.24 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=68.3
Q ss_pred eeeEEEEEeeccccchhh-hccch------------hhhhhhhccccceecCCCc-------hhHHHHHhc------ccc
Q 013492 277 IIKGTMTTTHSYTGDQRL-LDASH------------RDLRRARAAALNIVPTSTG-------AAKAVALVL------PAL 330 (442)
Q Consensus 277 I~~g~mTTiha~Tg~Q~~-lD~~h------------~d~rr~raaa~NIIPtstG-------aakav~kVl------PeL 330 (442)
+.+..++|++++||+.+- ++... +.--....+++|++|..-+ ..+.+.+.+ ...
T Consensus 11 ~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~~~~~~~~l~~ 90 (184)
T PF02774_consen 11 LERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKMIAETRKILGF 90 (184)
T ss_dssp ECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHHHHHHHHHCTE
T ss_pred CcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHhhccccceeec
Confidence 999999999999999652 22111 0111234689999999754 223332221 122
Q ss_pred CCceeEEEEeeCcCcceeEEEEEEEc-cCCCHHHHHHHHHhc
Q 013492 331 KGKLNGIALRVPTPNVSVVDLVVQVS-KKTFAEEVNAAFRES 371 (442)
Q Consensus 331 ~gkl~g~avRVPt~~vs~vdl~v~l~-k~~~~eeV~~a~~~a 371 (442)
..+++.+|+|||+..||+..++++++ ++.+.+++.++|.+.
T Consensus 91 ~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 91 PPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred cccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 23799999999999999999999995 888899999988876
No 46
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.99 E-value=3.8e-05 Score=78.44 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=61.5
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
++||||.|+|.|||.+++++..++ ++|||+|-|..+++.+.. ..+. ....
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p--d~ELVgV~dr~~~~~~~~------~~~v----------------------~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP--DMELVGVFSRRGAETLDT------ETPV----------------------YAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC--CcEEEEEEcCCcHHHHhh------cCCc----------------------cccC
Confidence 589999999999999999998764 599999988643332110 0110 0001
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
+... +. ..+|+|+-||+.....+.+...+++|.. ||.+
T Consensus 53 d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s 90 (324)
T TIGR01921 53 DDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDS 90 (324)
T ss_pred CHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEEC
Confidence 1111 11 3689999999999999999999999986 5554
No 47
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.92 E-value=2.5e-05 Score=67.06 Aligned_cols=114 Identities=28% Similarity=0.329 Sum_probs=68.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
||||.| .|.+|+.+++.+...+ .++++++.+.. +.....+ ...++ .+ .+ + ++...+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~~--~~~~~~~--~~~~~------------~~--~~--~-~~~~~~ 57 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAASA--RSAGKRV--SEAGP------------HL--KG--E-VVLELE 57 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEech--hhcCcCH--HHHCc------------cc--cc--c-cccccc
Confidence 689999 6999999999988864 48999995421 1100000 00010 00 00 0 011112
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHH-cCCCeEEEeCCCC----CCCCceeeccCccCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGK----GDIPTYVVGVNADAY 208 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~-aGAkkVIIsapsk----~d~pt~V~gVN~~~y 208 (442)
+ ..|.+.++|+||-|++.-...+.....+. +...+++|+..+. ++.|..++++|.+.+
T Consensus 58 ~--~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 58 P--EDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred c--CChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHh
Confidence 2 23444589999999998766664332221 2444588987762 467999999998754
No 48
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.83 E-value=4.8e-05 Score=75.89 Aligned_cols=93 Identities=20% Similarity=0.326 Sum_probs=66.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
|..||||+|||.||+.+++.|.......+++++|++.. ++....+. +. ..+.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~-~~~~~~~~-----------------~~--------~~~~-- 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA-ADLPPALA-----------------GR--------VALL-- 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC-HHHHHHhh-----------------cc--------Cccc--
Confidence 56899999999999999999876544469999999853 21111111 00 1111
Q ss_pred CCCCCC-CCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 147 RNPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 147 ~~p~~l-~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.+.+++ .| ..|+|+||.|.-.-+|++++-|++|..-+++|-
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~Sv 94 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSA 94 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEECh
Confidence 233342 34 589999999999999999999999998666653
No 49
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.55 E-value=0.0001 Score=72.34 Aligned_cols=91 Identities=26% Similarity=0.328 Sum_probs=59.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC-ChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~-~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||||.|+|+||+.+++.+...+ .+++++|-+.. ..+..... .. . | +.++.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~--~~~l~~v~~~~~~~~~~~~~----------------~~-~-----~--~~~~~-- 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDP--DLRVDWVIVPEHSIDAVRRA----------------LG-E-----A--VRVVS-- 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCC--CceEEEEEEcCCCHHHHhhh----------------hc-c-----C--CeeeC--
Confidence 69999999999999999988764 48888887421 11110000 00 0 1 22222
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+...+ +..+|+|+||||.....+.+...+++|.. |++-.|
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 23333 23689999999988778999999999965 555444
No 50
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.47 E-value=0.00043 Score=70.41 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=31.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC-------CCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~-------~~~~evvaInd~ 103 (442)
|.+||||.|||.||+.+++.+.+++ .-+++||+|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 6799999999999999999987652 125999999884
No 51
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.37 E-value=0.00032 Score=69.05 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=60.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||+|+| +|++|+.+++.+.+.+ ++++|++-|..+.... .+|. +.+.+. ... | +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~--~~elvav~d~~~~~~~----~~~~--~~~~~~----~~~-----g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE--GLQLVAAFERHGSSLQ----GTDA--GELAGI----GKV-----G--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCCcccc----CCCH--HHhcCc----CcC-----C--ceee--C
Confidence 7999999 8999999999998764 5999999884222210 1111 110000 000 1 2222 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
+.+.+ ...+|+|||+|......+.+...+++|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 33333 13589999999988888889999999965 555
No 52
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.18 E-value=0.00096 Score=65.84 Aligned_cols=93 Identities=28% Similarity=0.331 Sum_probs=64.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+||||+|+|+||..+++.+.+-. .++|++++-|.. .+..-++.+ + +.+. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~~-~ek~~~~~~--~------------------~~~~--------~ 50 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDRD-EEKAKELEA--S------------------VGRR--------C 50 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecCC-HHHHHHHHh--h------------------cCCC--------c
Confidence 58999999999999999887543 469999999963 333333331 1 1110 0
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+..|+-.-..+|+++||.+.---++.+.+.|++|..-+|+|-.
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred cccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence 1111111137899999999888888999999999886666653
No 53
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.17 E-value=0.00066 Score=59.46 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=30.2
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCcEEEEEecCC
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTG 104 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~~~~~evvaInd~~ 104 (442)
|||+|+|+ ||+||.+++.+.+++ +++|+++-|..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~v~~~ 35 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--GFELVGAVDRK 35 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--TEEEEEEEETT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--CcEEEEEEecC
Confidence 69999998 999999999999875 49999998853
No 54
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.13 E-value=0.0017 Score=64.13 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=56.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
++||||+|+|+||+.+++.+... .+.+++++|.|.. ++....+.+ .||. .+ .+ .
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~-~~~a~~~a~---~~g~----~~---------------~~--~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRD-PQRHADFIW---GLRR----PP---------------PV--V 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCC-HHHHHHHHH---hcCC----Cc---------------cc--C
Confidence 48999999999999999998763 1358999998852 332211110 0110 00 00 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGA 183 (442)
++.++-. .+|+|++||+...-.+.+...+++|.
T Consensus 60 ~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk 92 (271)
T PRK13302 60 PLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK 92 (271)
T ss_pred CHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC
Confidence 2222321 47999999998877888888888875
No 55
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.03 E-value=0.0008 Score=69.30 Aligned_cols=37 Identities=27% Similarity=0.568 Sum_probs=30.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC-------CCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~-------~~~~evvaInd~ 103 (442)
|+++|+|.|||.||+.+++.+.++. .-+++|++|.+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 5689999999999999999987643 125889999764
No 56
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.98 E-value=0.0022 Score=62.97 Aligned_cols=92 Identities=25% Similarity=0.317 Sum_probs=60.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+||||+|+|+||+.+++.+.... ..+++++|-|.. .+....+.+ .+| . .++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~~-~~~a~~~a~---~~~-----------------~---~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDRN-LEKAENLAS---KTG-----------------A---KAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECCC-HHHHHHHHH---hcC-----------------C---eeE--CC
Confidence 69999999999999999987653 158999998862 332222211 010 0 111 12
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
..++. .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 33332 2689999999988778888888888864 555433
No 57
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.95 E-value=0.002 Score=63.00 Aligned_cols=87 Identities=24% Similarity=0.330 Sum_probs=56.5
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||+|+|+ |++|+.+++.+...+ +++++++.|.. .+..... + .+| +.+. .
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~--~~elvav~d~~-~~~~~~~---~-~~~--------------------i~~~--~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAE--DLELVAAVDRP-GSPLVGQ---G-ALG--------------------VAIT--D 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecC-Ccccccc---C-CCC--------------------cccc--C
Confidence 79999996 999999999887764 49999998852 1111000 0 000 1111 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
+...+- .++|+|+|+|......+.+...+++|.. ||+
T Consensus 53 dl~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL---ADADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 222211 1589999999877678888899999975 444
No 58
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.93 E-value=0.0012 Score=67.18 Aligned_cols=37 Identities=38% Similarity=0.619 Sum_probs=30.6
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC-------CCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~-------~~~~evvaInd~ 103 (442)
|++||+|.|||.||+.+++.+.++. .-+++|++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 6799999999999999999987632 124899999884
No 59
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.92 E-value=0.0029 Score=53.18 Aligned_cols=94 Identities=34% Similarity=0.449 Sum_probs=62.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
|||||+|+|.+|+..++.+.... +.+++++|-|.. ++...... ..+|. . .+. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~~-~~~~~~~~---~~~~~-----~---------------~~~--~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDPD-PERAEAFA---EKYGI-----P---------------VYT--D 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECSS-HHHHHHHH---HHTTS-----E---------------EES--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeCC-HHHHHHHH---HHhcc-----c---------------chh--H
Confidence 69999999999999999998873 469999999973 33222111 11110 0 111 1
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
..++ ..+.++|+|+-||+...-.+.+..-+++|. .|++.-|
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP 94 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP 94 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence 1111 112268999999999888888999999998 5766544
No 60
>PRK11579 putative oxidoreductase; Provisional
Probab=96.92 E-value=0.0041 Score=62.56 Aligned_cols=92 Identities=25% Similarity=0.408 Sum_probs=59.7
Q ss_pred ceeEEEEcCChhHHH-HHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 68 ~ikVaInGfGrIGr~-~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
++||||+|+|.||+. .++++...+ .++|+||.|.. .+... -+| +. +.++.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~--~~~l~av~d~~-~~~~~--~~~----~~-------------------~~~~~- 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP--GLELAAVSSSD-ATKVK--ADW----PT-------------------VTVVS- 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC--CCEEEEEECCC-HHHHH--hhC----CC-------------------CceeC-
Confidence 589999999999985 467666543 49999999863 33221 011 00 01111
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+..++ -.+.++|+|+-||+.....+.+...+++|. .|++--|
T Consensus 55 -~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 55 -EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred -CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 11111 012368999999999999999999999984 4766433
No 61
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0027 Score=65.33 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=31.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCC-------CCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~-------~~~evvaInd~ 103 (442)
|++||+|.|||.||+.+++.+.++++ .+++|++|.+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 57999999999999999999987642 36889888874
No 62
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.73 E-value=0.0022 Score=67.22 Aligned_cols=93 Identities=28% Similarity=0.440 Sum_probs=55.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC-------CCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~-------~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~ 140 (442)
++||||.|+|.||+.+++.+.++. ..+++|++|.|.. .+.. .-+. ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~-~~~~-~~~~---------------------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD-LEKD-RGVD---------------------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC-hhhc-cCCC---------------------Ccc--
Confidence 589999999999999999886542 1258999998742 2110 0000 000
Q ss_pred EEEEecCCCCCCCCCCccccEEEcCCCCC-CCHhhHHHHHHcCCCeEEEeC
Q 013492 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVF-VDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 141 I~v~~~~~p~~l~W~~~gvDiVie~TG~f-~~~e~a~~hl~aGAkkVIIsa 190 (442)
..++ .|+.++ ..+..+|+|+||||.. ...+.....+++|. -|+|+
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 0111 122221 1234789999999864 34566667788874 44553
No 63
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.62 E-value=0.0033 Score=64.19 Aligned_cols=35 Identities=31% Similarity=0.693 Sum_probs=29.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-----CCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK-----DSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~-----~~~~evvaInd~ 103 (442)
|||+|.|||.||+.+++.+.++. .-+++||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 48999999999999999998741 235899999884
No 64
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.014 Score=58.61 Aligned_cols=99 Identities=26% Similarity=0.274 Sum_probs=61.4
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEE-ECCEEEEEE
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGIS-VDGKVIQVV 144 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~-v~Gk~I~v~ 144 (442)
|+|||+|+| .||.||.+++++.+.+ ++++++.-|..+.. + .|.- .+.+. ++-..+.+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~~----~------~g~d--------~ge~~g~~~~gv~v~ 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGSL----S------LGSD--------AGELAGLGLLGVPVT 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCC--CceEEEEEecCCcc----c------cccc--------hhhhccccccCceee
Confidence 358999999 6999999999999875 59999887642111 0 1110 00010 000112222
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 145 ~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
. + +.-.....|++||-|-...+.+.++..++.|.+-||=|.
T Consensus 61 ~--~---~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTT 101 (266)
T COG0289 61 D--D---LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTT 101 (266)
T ss_pred c--c---hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECC
Confidence 1 1 111234789999999888888889888899976554343
No 65
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.01 E-value=0.028 Score=59.98 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=62.2
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC---------ChhhhhhhcccCccc-ccCCcceeeecCCcEEEC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTL-GIFEADVKPVGTDGISVD 137 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~---------~~~~la~LlkyDSt~-g~f~~~v~~~~~~~i~v~ 137 (442)
..||+|-|||.||+.+++.|++.. ..||+|.|.. +++ .|++|-... |.... ..+. .
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GLD~~---~L~~~k~~~~~~l~~----~~~~---~- 297 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGIDLE---KLKEIKEVRRGRISE----YAEE---F- 297 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHH---HHHHHHHhcCCchhh----hhhh---c-
Confidence 479999999999999999998864 8999999831 232 223221111 11110 0000 0
Q ss_pred CEEEEEEecCCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 138 Gk~I~v~~~~~p~~l~W~~~gvDiVie~T-G~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
| .+.. ++.. .| ...+|+.|.|+ +.-++.+.+..+++.+|| +|+-+
T Consensus 298 ~--~~~i---~~~~-i~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIvEg 343 (445)
T PRK09414 298 G--AEYL---EGGS-PW-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVAEG 343 (445)
T ss_pred C--Ceec---CCcc-cc-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEEcC
Confidence 1 0111 1222 24 35799999997 577888999999887886 54533
No 66
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.94 E-value=0.002 Score=55.02 Aligned_cols=87 Identities=28% Similarity=0.353 Sum_probs=47.9
Q ss_pred cCChhHHHHHHHHHhCCCC-CcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCCCC-C
Q 013492 75 GFGRIGRNFLRCWHGRKDS-PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVN-L 152 (442)
Q Consensus 75 GfGrIGr~~lr~l~~~~~~-~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p~~-l 152 (442)
|||.||+.+++.+.++... +++|++|-+.. . ++..+.. . ...+..... +..+ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~-----~~~~~~~--------~-~~~~~~~~~----------~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-M-----LISKDWA--------A-SFPDEAFTT----------DLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-E-----EEETTHH--------H-HHTHSCEES----------SHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-c-----hhhhhhh--------h-hcccccccC----------CHHHHh
Confidence 8999999999999887422 59999998753 0 1100100 0 000000010 1111 1
Q ss_pred CCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 153 PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 153 ~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.| ..+|+|||||+.-...+.....+++|. -||++
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 11 158999999998777777778888887 44554
No 67
>PLN02775 Probable dihydrodipicolinate reductase
Probab=95.80 E-value=0.027 Score=57.07 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred cCceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEE
Q 013492 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 66 ~~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~ 144 (442)
.+.+||+||| .|+.||.+.+++.. + +|++|+..|.... -++-.+.+.|..++++
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~--~~~Lv~~~~~~~~----------------------~~~~~~~~~g~~v~~~ 63 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-A--GLQLVPVSFTGPA----------------------GVGVTVEVCGVEVRLV 63 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-C--CCEEEEEeccccc----------------------cccccceeccceeeee
Confidence 3568999999 99999999999988 4 4999987764210 0011123444455555
Q ss_pred ecCCCCC-C-CCCCcccc-EEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeE--ecCC
Q 013492 145 SNRNPVN-L-PWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPII--SNAS 219 (442)
Q Consensus 145 ~~~~p~~-l-~W~~~gvD-iVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~II--SnaS 219 (442)
...|... + .-.+...| ++||-|-.....+..+..++.|..-||=|..-.++ +...-.-...-+++ .|-|
T Consensus 64 ~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e------~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 64 GPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRD------RLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred cCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHH------HHHHHHhcCCccEEEECccc
Confidence 2122211 1 00111468 89998877777778888888898744433321111 11100001123444 4555
Q ss_pred chhhhhHHHHHHHHHhhc
Q 013492 220 CTTNCLAPFVKVLDQKFG 237 (442)
Q Consensus 220 CTTn~Lap~lkvL~~~fG 237 (442)
=-.|-|.-+++.+-+.|+
T Consensus 138 iGv~ll~~l~~~aA~~l~ 155 (286)
T PLN02775 138 KQVVAFQAAMEIMAEQFP 155 (286)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 555666666666555554
No 68
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.78 E-value=0.12 Score=50.26 Aligned_cols=34 Identities=41% Similarity=0.658 Sum_probs=30.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
+.+||+|-|||.||+.+++.|.+.. +.||+|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g---~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG---AKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 4579999999999999999998763 899999995
No 69
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.60 E-value=0.017 Score=60.60 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=64.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhc-ccCccccc-CCcce-eeecCCcEEECCEEEEEE
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL-KYDSTLGI-FEADV-KPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Ll-kyDSt~g~-f~~~v-~~~~~~~i~v~Gk~I~v~ 144 (442)
.||+|.| +|.||++.++++...++ .|+|+|+.--.+++-+..+. +|...|-. .+... +... ..+ .+..+.++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~-~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~-~~l--~~~~~~v~ 77 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPD-RFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELK-EAL--AAAGIEVL 77 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcc-ccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHH-Hhh--ccCCceEE
Confidence 4899999 99999999999877653 69999997322444333332 23332200 00000 0000 011 11113333
Q ss_pred ecCC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 145 SNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 145 ~~~~-p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
...+ ..++ -....+|+|+.+++.+...+..-..+++|. +|.+
T Consensus 78 ~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 78 AGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred EChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 3222 1111 011268999999999999888888899984 3544
No 70
>PRK10206 putative oxidoreductase; Provisional
Probab=95.58 E-value=0.036 Score=56.25 Aligned_cols=94 Identities=24% Similarity=0.303 Sum_probs=58.4
Q ss_pred eeEEEEcCChhHHH-HHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~-~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||||+|+|+|++. .++.+.... +.++|+||.|.. .+.....-+| |. + .++ .
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~~-~~~~~~~~~~----~~----~---------------~~~--~ 54 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRRH-AKPEEQAPIY----SH----I---------------HFT--S 54 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcCC-hhHHHHHHhc----CC----C---------------ccc--C
Confidence 79999999998864 466664432 359999999963 2211111111 10 0 011 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
|..++ ..+.++|+|+-||+...-.+.+.+.+++| |.|++--|
T Consensus 55 ~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 55 DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 11111 11237899999999999999999999999 45776433
No 71
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.12 E-value=0.21 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=30.6
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG 104 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~ 104 (442)
+..||+|-|||.+|+.+++.|.+.. ..+|+|.|..
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~~ 56 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDPD 56 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcCC
Confidence 3479999999999999999999874 7899999963
No 72
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.09 E-value=0.094 Score=51.51 Aligned_cols=97 Identities=29% Similarity=0.325 Sum_probs=60.1
Q ss_pred CceeEEEEcCChhHH-HHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 67 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 67 ~~ikVaInGfGrIGr-~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
+++||||+|.|.|++ ..+..+...++. +++++|.|.. ++.+..+. ..||.- + .+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~~-~~~a~~~a---~~~~~~----~---------------~~~ 57 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDRD-PERAEAFA---EEFGIA----K---------------AYT 57 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecCC-HHHHHHHH---HHcCCC----c---------------ccC
Confidence 568999999997775 577787765422 7999998863 33221111 112210 0 000
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+..++ -.+..+|+|+=||+...-.+.+.+.+++|. .|++--|
T Consensus 58 --~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 58 --DLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred --CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 11100 011248999999999999999999999987 3666433
No 73
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.83 E-value=0.091 Score=51.88 Aligned_cols=137 Identities=27% Similarity=0.346 Sum_probs=83.5
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEE---EEEec-CCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEV---VAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~ev---vaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v 143 (442)
|.||+|+|.|.||.-++--++.+. .++|. |+|.- +.++...+. |.-.+|| ++ +.| +
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraar-lgv~tt~------------eg--v~~----l 63 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAAR-LGVATTH------------EG--VIG----L 63 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHh-cCCcchh------------hH--HHH----H
Confidence 579999999999987765554442 34553 44432 112222222 1122221 11 111 1
Q ss_pred EecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCCCC--CCCeEecCCch
Q 013492 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCT 221 (442)
Q Consensus 144 ~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~--~~~IISnaSCT 221 (442)
+. -| +..++|+|||+|......+.|.++.++|.+- |+-....--|-+|+-||-+.-.+ .-+.| .|-
T Consensus 64 l~--~p-----~~~di~lvfdatsa~~h~~~a~~~ae~gi~~--idltpaaigp~vvp~~n~~eh~~a~nvnmv---tcg 131 (310)
T COG4569 64 LN--MP-----EFADIDLVFDATSAGAHVKNAAALAEAGIRL--IDLTPAAIGPYVVPVVNLEEHVDALNVNMV---TCG 131 (310)
T ss_pred Hh--CC-----CCCCcceEEeccccchhhcchHhHHhcCCce--eecchhccCCeeccccchHHhcCCCCcceE---eec
Confidence 11 12 2237899999999999999999999999963 44322222388999999776432 23445 788
Q ss_pred hhhhHHHHHHHHHhh
Q 013492 222 TNCLAPFVKVLDQKF 236 (442)
Q Consensus 222 Tn~Lap~lkvL~~~f 236 (442)
..+-.|++....+-.
T Consensus 132 gqatipiv~avsrvv 146 (310)
T COG4569 132 GQATIPIVAAVSRVV 146 (310)
T ss_pred Ccccchhhhhhhhhe
Confidence 888888887776543
No 74
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=94.79 E-value=0.33 Score=52.25 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=65.0
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhc-ccCcccc-cCCcceeeecCCcEEECCE--EEE
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL-KYDSTLG-IFEADVKPVGTDGISVDGK--VIQ 142 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Ll-kyDSt~g-~f~~~v~~~~~~~i~v~Gk--~I~ 142 (442)
..||+|.| +|-||.+.++.+..+++ .|+|+++.--.+.+.+.... +|...|- ..+......-...+ .|. .++
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd-~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l--~~~~~~~~ 133 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPD-KFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEAL--ADLDDKPE 133 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCcc-ccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhh--cCCCCCcE
Confidence 35999999 79999999999987753 69999998755565444422 2322220 00000000000001 110 123
Q ss_pred EEecC-CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 143 VVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 143 v~~~~-~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
++... ...++- ....+|+|+.+.+.+.+..-.-..+++| |+|.+-
T Consensus 134 vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALA 179 (454)
T PLN02696 134 IIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 179 (454)
T ss_pred EEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEe
Confidence 33211 111110 1126899999999888877666778888 445443
No 75
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.64 E-value=0.048 Score=50.30 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=28.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG 104 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~ 104 (442)
.+|||.|||+|||.+++.+.... ++|++.+-..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~~ 69 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRSP 69 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT----EEEEEESSC
T ss_pred CEEEEEEEcCCcCeEeeeeecCC---ceeEEecccC
Confidence 58999999999999999998874 8999888754
No 76
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.93 E-value=0.14 Score=50.62 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=59.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC-----CC---CcEEEEEe-cCCChhhhhhhcccCcccccCCcceeeecCCcEEEC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK-----DS---PLEVVAIN-DTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~-----~~---~~evvaIn-d~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~ 137 (442)
.+.||.|+|.|-+|-.++..|.... -+ .++|.-+. |..+...+..-+-+++..|+.+.++-. + .--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~-~-ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLV-N-RLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHH-H-HHHhcc
Confidence 4579999999999999999987531 01 13555454 233444443333344556777665421 1 101122
Q ss_pred CEEEEEEecC-CCCCCCCCCccccEEEcCCCCCCCHhhHHH
Q 013492 138 GKVIQVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177 (442)
Q Consensus 138 Gk~I~v~~~~-~p~~l~W~~~gvDiVie~TG~f~~~e~a~~ 177 (442)
|-.++....+ ++.++ + .+.|+||+|+..+.+|.....
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~ 125 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILR 125 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHH
Confidence 4333333321 22222 1 368999999998888765543
No 77
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.88 E-value=0.26 Score=49.19 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=61.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC---------ChhhhhhhcccCcccccCCcceeeecCCcEEECC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~---------~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~G 138 (442)
..||+|-|||.||+.+++.|.+.. ..||+|.|.. +++.+..|+.++...+.. +.... ..+.|
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~---v~~~~---~~~~~ 108 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGR---VSEYA---KKYGT 108 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCc---HHHHh---hcCCC
Confidence 369999999999999999998864 8999999832 223332333332211100 00000 00111
Q ss_pred EEEEEEecCCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 139 k~I~v~~~~~p~~l~W~~~gvDiVie~T-G~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.+.. ++.++ | ...+||.+=|. +.-++.+.+..-.+.+|| +|+-+
T Consensus 109 --a~~~---~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~Eg 153 (254)
T cd05313 109 --AKYF---EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVAEG 153 (254)
T ss_pred --CEEe---CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCE-EEEeC
Confidence 1111 22222 4 35789888774 677888888876666786 55544
No 78
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=93.80 E-value=1.1 Score=45.51 Aligned_cols=272 Identities=22% Similarity=0.306 Sum_probs=140.4
Q ss_pred cccccCceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC--CChhhhhhhcccCcccccCCcceeeecCCcEEECC
Q 013492 62 KVAAQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (442)
Q Consensus 62 ~~~~~~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~--~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~G 138 (442)
++.++..+|||..| -|--|+++.|.+.+++ .+||..+..- .+-+ ++ + |-+. + .....++..
T Consensus 13 ~~~~~k~~rv~LlGArGYTGknlv~Lin~HP--ylevthvssrel~Gqk-----l~-~--ytk~----e-iqy~~lst~- 76 (340)
T KOG4354|consen 13 SVKPEKDIRVGLLGARGYTGKNLVRLINNHP--YLEVTHVSSRELAGQK-----LE-V--YTKL----E-IQYADLSTV- 76 (340)
T ss_pred ccccCCCceEEEEeccccchhhHHHHhcCCC--ceEEEeeehhhhcCCc-----cc-C--cchh----h-eeecccchh-
Confidence 34666779999999 8999999999998875 5998766531 1110 10 0 1000 0 001111111
Q ss_pred EEEEEEecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCC-CCC--ceeec---cCc-cCCCCC
Q 013492 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIP--TYVVG---VNA-DAYKPD 211 (442)
Q Consensus 139 k~I~v~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~-d~p--t~V~g---VN~-~~y~~~ 211 (442)
|...+. ...-+|..+.+.+.-+-+.+...-..+.-|-++|+-...- -.| -.++| .|+ ++++ .
T Consensus 77 ---------D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-n 145 (340)
T KOG4354|consen 77 ---------DAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-N 145 (340)
T ss_pred ---------hHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-h
Confidence 111110 0123555566666544444444433345566777655421 123 45554 453 2232 3
Q ss_pred CCeEecCCchhhh----hHHHHHHHHHhhccchhhhcccccccchhhhhhhhccccccccccccccccceeeEEEEEeec
Q 013492 212 EPIISNASCTTNC----LAPFVKVLDQKFGKYQKHLQKSSLSLCSDIIQLRKTQKVTQLNDRIFPMCAGIIKGTMTTTHS 287 (442)
Q Consensus 212 ~~IISnaSCTTn~----Lap~lkvL~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~g~mTTiha 287 (442)
.+.|+|+.|-.+. |.|++|.++-+-. +-.+--
T Consensus 146 a~~iaNPGCYaTgsQl~l~Pllk~i~g~p~--------------------------------------------ifgvSG 181 (340)
T KOG4354|consen 146 ARLIANPGCYATGSQLPLVPLLKAILGKPE--------------------------------------------IFGVSG 181 (340)
T ss_pred hhhccCCCcccccCcccchHHHHHhcCCcc--------------------------------------------eeeecc
Confidence 5689999996553 5677766632100 122234
Q ss_pred cccchhhhccchhhhhhhhccccceecCCCc-h--hHHHH-------HhccccCCceeEEEEeeCcCcceeEEEEEEEcc
Q 013492 288 YTGDQRLLDASHRDLRRARAAALNIVPTSTG-A--AKAVA-------LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK 357 (442)
Q Consensus 288 ~Tg~Q~~lD~~h~d~rr~raaa~NIIPtstG-a--akav~-------kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k 357 (442)
|+|+.+--.+ ..|+ .-.+.|+||..-. . -.++. .++|++-.-+.||. ..+.+.++|
T Consensus 182 ySGAGtkpsp-kNd~---~~l~nnlipY~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~----------lTi~vpmkk 247 (340)
T KOG4354|consen 182 YSGAGTKPSP-KNDY---SELANNLIPYGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQ----------LTIYVPMKK 247 (340)
T ss_pred ccCCCCCCCC-ccCH---HHHhcCCccccccccchhHhHHHhhCCceeechhHHHHhhhce----------EEEEEeecC
Confidence 6666432211 1122 2378999998521 1 11111 13455543344443 356677889
Q ss_pred CCCHHHHHHHHHhcccc-cCCCceeeccCCeeeeccCCCCcceEEeCCCCccccCCeEEEEEEecCC
Q 013492 358 KTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 423 (442)
Q Consensus 358 ~~~~eeV~~a~~~aa~~-~lkgil~~~~~~~VS~Df~~~~~S~~~d~~~t~~~~~~~vKv~~WyDNE 423 (442)
.++.||+++.++..-++ +|--++ .|-|+| -|..|+.|-.+ +....-..++-+-+++=-||-
T Consensus 248 sv~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~v~~--ggF~~~~~g~Ravii~tIDNL 309 (340)
T KOG4354|consen 248 SVRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHYVHM--GGFPDRIPGDRAVIISTIDNL 309 (340)
T ss_pred cccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcceeEe--ccccCCCCCceEEEEEehhhh
Confidence 99999999999987654 333332 234555 46666654332 111111223335567777774
No 79
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=93.79 E-value=0.14 Score=51.66 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=56.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+||.||| .|++||.+.+++.. + +|++|+..- |... .+.+...+.|..+++....
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~--~~~Lv~~~~-------------~~~~---------~~~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-A--GLEIVPTSF-------------GGEE---------EAENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-C--CCEEEeeEc-------------cccc---------cccchhhhcccceeeeccc
Confidence 5899999 99999999999877 3 499998621 1100 0111122333345553211
Q ss_pred ----CCCCCCCCCcccc-EEEcCCCCCCCHhhHHHHHHcCCCeEE
Q 013492 148 ----NPVNLPWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVL 187 (442)
Q Consensus 148 ----~p~~l~W~~~gvD-iVie~TG~f~~~e~a~~hl~aGAkkVI 187 (442)
+...+- +...| ++||-|-.....+.+...++.|..-|+
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~Vi 98 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVM 98 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 111111 11267 999988777777888888888886443
No 80
>PLN02700 homoserine dehydrogenase family protein
Probab=93.72 E-value=0.13 Score=54.05 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=29.7
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCC------CCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKD------SPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~------~~~evvaInd~ 103 (442)
++++|+|.|||.||+.+++.+..+.. =++.|++|.|.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 36899999999999999999875431 24788999874
No 81
>PLN02477 glutamate dehydrogenase
Probab=93.57 E-value=0.56 Score=49.78 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
..+|+|-|||.||+.+++.|.+.. ..||||.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 368999999999999999998864 899999995
No 82
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.55 E-value=0.17 Score=48.09 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=59.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+.+|+|.|+|.+|+.+++.+... ...++++|+-|. +++.. |. .+.|..+ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~----------~~-------------~i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI----------GT-------------KIGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc----------CC-------------EeCCeEE--cCHH
Confidence 46899999999999999864322 245999998875 22211 10 0122211 1111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps 192 (442)
+..++ ..+.++|+|+-|++.....+-+..-+++|.+.|+.-.|-
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 11111 123479999999997766666777778998767654443
No 83
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.52 E-value=0.23 Score=52.24 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=30.2
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.++|||++|-|-.|+-++-....-+ .|++|||.|.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~--Gm~vvaisd~ 50 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMP--GMEVVAISDR 50 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcC--CceEEEEecc
Confidence 4599999999999999998777554 4999999995
No 84
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.09 E-value=0.12 Score=59.00 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=30.1
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC------CCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~------~~~~evvaInd~ 103 (442)
+.++|+|.|||.||+.+++.+.++. .-+++|++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 6799999999999999999987542 125889999763
No 85
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.70 E-value=0.13 Score=51.92 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
..+|||+|||+|||.+++.+.... |+|.+.+-
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg---m~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG---AKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC---CEEEEECC
Confidence 358999999999999999987763 89877753
No 86
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.33 E-value=0.089 Score=59.94 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=30.6
Q ss_pred cCceeEEEEcCChhHHHHHHHHHhCC-------CCCcEEEEEecC
Q 013492 66 QAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDT 103 (442)
Q Consensus 66 ~~~ikVaInGfGrIGr~~lr~l~~~~-------~~~~evvaInd~ 103 (442)
.+.++|+|.|||.||+.+++.+.++. .-+++|++|.+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 35699999999999999999987642 125889999763
No 87
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.13 E-value=0.17 Score=51.25 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|||+|||.+++.+.... ++|++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fg---m~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG---MRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC---CEEEEECC
Confidence 48999999999999999987763 89877653
No 88
>PLN00016 RNA-binding protein; Provisional
Probab=91.69 E-value=0.6 Score=47.41 Aligned_cols=38 Identities=29% Similarity=0.188 Sum_probs=30.5
Q ss_pred cccccCceeEEEE----c-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 62 KVAAQAKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 62 ~~~~~~~ikVaIn----G-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.....|+.||.|. | +|.||+.+++.|.++. .+|.++..
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 3344566799999 8 9999999999998864 68887765
No 89
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.67 E-value=0.21 Score=50.68 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|||+|||+|||.+++.+.... ++|++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg---~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALG---MKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC---CEEEEEC
Confidence 58999999999999999987653 8887764
No 90
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.47 E-value=0.86 Score=49.15 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=63.5
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC---------ChhhhhhhcccCccc-ccCCcceeeecCCcEEEC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTL-GIFEADVKPVGTDGISVD 137 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~---------~~~~la~LlkyDSt~-g~f~~~v~~~~~~~i~v~ 137 (442)
..+|+|-|||.+|+..++.|.+.. ..||+|.|.. +++.+.+++++-... |.... ..+. ..
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~----~~~~---~~ 306 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKE----YAKH---SS 306 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHh----hhhc---cC
Confidence 369999999999999999998864 7999999964 233333333221111 11110 0000 00
Q ss_pred CEEEEEEecCCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 138 Gk~I~v~~~~~p~~l~W~~~gvDiVie~-TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
| .+.+. + .=+|. ..+||.+=| ++.-++.+.|..-++.||| +|+-
T Consensus 307 ~--a~~~~---~-~~~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~E 351 (454)
T PTZ00079 307 T--AKYVP---G-KKPWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVAE 351 (454)
T ss_pred C--cEEeC---C-cCccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEEe
Confidence 1 11111 1 22365 589999877 5788899999887788997 4443
No 91
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.34 E-value=0.4 Score=46.37 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=57.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcc--cCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK--YDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Llk--yDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
+++.|+|.|++|+.+++.|.++. .+|+.|.+- .+.+...++ +|. ..+..++....++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d--~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRD--EERVEEFLADELDT--------------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcC--HHHHHHHhhhhcce--------------EEEEecCCCHHHHHh
Confidence 48999999999999999999875 588888753 332222121 221 111112211112211
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCH-hhHHHHHH-cCCCeEEEeCCCC
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDR-EGAGKHIQ-AGAKKVLITAPGK 193 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~-e~a~~hl~-aGAkkVIIsapsk 193 (442)
. +-..+|+++=+||.-... --+..+++ .|.+++|..+.+.
T Consensus 62 -----a--gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 62 -----A--GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -----c--CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 1 123679999999974332 22334444 6888888777653
No 92
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.98 E-value=0.94 Score=42.96 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=26.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.+|+|.|||++|+.+++.|.+.. .+|+ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G---~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG---AKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEE-EEcC
Confidence 58999999999999999998764 6888 5554
No 93
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.90 E-value=0.58 Score=46.17 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 3899999 9999999999999874 68888864
No 94
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.78 E-value=0.9 Score=47.49 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=60.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhc---cc--CcccccCCcceeeecCCcEEECCEEE
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL---KY--DSTLGIFEADVKPVGTDGISVDGKVI 141 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Ll---ky--DSt~g~f~~~v~~~~~~~i~v~Gk~I 141 (442)
+.+|+||.|.|+|+|-|+++++.-+++..+||||.|. +.+...-.. ++ -..||.|+.=.
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syEeLa--------------- 68 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYEELA--------------- 68 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCCCCccccCHHHHh---------------
Confidence 5699999999999999999999877678999999986 333221111 11 11111111110
Q ss_pred EEEecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 142 ~v~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
++..+|+|.-++..-...|.+-.-++.|-. |++
T Consensus 69 -------------kd~~vDvVyi~~~~~qH~evv~l~l~~~K~-VL~ 101 (351)
T KOG2741|consen 69 -------------KDPEVDVVYISTPNPQHYEVVMLALNKGKH-VLC 101 (351)
T ss_pred -------------cCCCcCEEEeCCCCccHHHHHHHHHHcCCc-EEe
Confidence 123688888888877777777666665532 555
No 95
>PLN02928 oxidoreductase family protein
Probab=90.61 E-value=0.3 Score=50.21 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.+|||.|||+||+.+++.+.... ++|++.+..
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG---~~V~~~dr~ 191 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG---VKLLATRRS 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC---CEEEEECCC
Confidence 48999999999999999998764 899887643
No 96
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=90.58 E-value=0.28 Score=50.30 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|+||||+.++|.+.... |+|.+-+-
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fg---m~v~y~~~ 177 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFG---MKVLYYDR 177 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC---CEEEEECC
Confidence 58999999999999999998653 88766554
No 97
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.54 E-value=0.31 Score=49.94 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=26.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||+|||+||+.+++.+.... |+|++.+-
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg---m~v~~~d~ 173 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG---MKVIGYDP 173 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEECC
Confidence 48999999999999999888764 89877764
No 98
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.51 E-value=0.51 Score=47.42 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.2
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.-||+|.|+|++|+.+++.+.... .+|.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 358999999999999999998764 57766654
No 99
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.34 E-value=0.33 Score=49.51 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHH-hCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~-~~~~~~~evvaIn 101 (442)
.+|||+|||+|||.+++.+. ... |+|++.+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fg---m~V~~~~ 176 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFN---MPILYNA 176 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCC---CEEEEEC
Confidence 58999999999999999886 553 7876544
No 100
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.33 E-value=0.45 Score=47.72 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|+|.|+|+||+.+++.+.... ++|...|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999998764 57776664
No 101
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.13 E-value=2 Score=42.81 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=26.5
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|++||+|.|.|.||..++..|.... .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 5579999999999999999998764 46665653
No 102
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.12 E-value=0.35 Score=50.82 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|||+|||.+++.+.... ++|++.+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d~ 182 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG---MRVYFYDI 182 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEECC
Confidence 48999999999999999998764 89887763
No 103
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.91 E-value=0.39 Score=48.69 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|||+||+.+++.+.... ++|++.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG---~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFG---MNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 58999999999999999877653 89888774
No 104
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.78 E-value=1.3 Score=47.59 Aligned_cols=105 Identities=12% Similarity=0.224 Sum_probs=60.5
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC---------ChhhhhhhcccCcccccCCcceeeecCCcEEECC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~---------~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~G 138 (442)
..||+|-|||.+|...++.|++.. -.||+|.|.. +++.+.|+.+|... ..+.+...... . |
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~---~~~~v~~~~~~---~-g 297 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNL---YRGRIREYAEK---Y-G 297 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhh---cCCchhhhHhh---c-C
Confidence 369999999999999999998864 7999999921 33333333222110 00111100000 0 1
Q ss_pred EEEEEEecCCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 139 k~I~v~~~~~p~~l~W~~~gvDiVie~T-G~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.+... + +=+|. ..+|+.+=|. +.-++.+.|.+-...|++ +|+.+
T Consensus 298 --a~~i~---~-d~~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~Eg 342 (444)
T PRK14031 298 --CKYVE---G-ARPWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSEG 342 (444)
T ss_pred --CEEcC---C-ccccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEECC
Confidence 11211 1 12354 4789988775 677888888876655663 54544
No 105
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.75 E-value=0.4 Score=48.95 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||+|||+||+.+++.+.... ++|.+.+-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 58999999999999999998763 78877653
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=89.54 E-value=0.41 Score=50.27 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||+|||+|||.+++.+.... ++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG---~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD---VKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 47999999999999999988753 88877764
No 107
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.48 E-value=0.85 Score=48.65 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|+|.|+|.||+.+++.+.... .+|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 48999999999999999988764 5765543
No 108
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.47 E-value=0.9 Score=36.90 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=30.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhc
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Ll 113 (442)
||||.|+|.+|..+++.|.+....+-+|.-+++. +++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998874234577656443 355544443
No 109
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.46 E-value=0.31 Score=43.77 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=26.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.++||+|+|.|++|..+.++|.... .+|++|-.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~s 41 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG---HEVVGVYS 41 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT---SEEEEESS
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEe
Confidence 3589999999999999999998764 78888864
No 110
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.34 E-value=0.92 Score=48.22 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=23.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
-+|+|.|+|.||+.+++.+.... .+|+++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 48999999999999999888764 466554
No 111
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.29 E-value=0.32 Score=45.50 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=53.7
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCC
Q 013492 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 71 VaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p 149 (442)
|+|.| +|.+|+.++++|.... ++|.++....+ +..+.-|+. .| ++ + +.+ ...|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~-~~~~~~l~~---~g-----~~------v-v~~------d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPS-SDRAQQLQA---LG-----AE------V-VEA------DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSH-HHHHHHHHH---TT-----TE------E-EES-------TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccc-hhhhhhhhc---cc-----ce------E-eec------ccCCH
Confidence 68999 9999999999999843 88888765321 111111211 01 01 1 100 11233
Q ss_pred CCCCCCCccccEEEcCCCCCCCH------hhHHHHHHcCCCeEEEeC
Q 013492 150 VNLPWGDLGIDLVIEGTGVFVDR------EGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 150 ~~l~W~~~gvDiVie~TG~f~~~------e~a~~hl~aGAkkVIIsa 190 (442)
+.|.=.-.|+|.||.+++..... .-+....++|.|++|.+.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 33221223899999999966322 223456678999998754
No 112
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.09 E-value=1 Score=42.68 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=26.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEec
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd 102 (442)
.+||+|.|.|++|+.+++.|......+++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 36899999999999999998765322344 656665
No 113
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.65 E-value=1.1 Score=46.45 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.3
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
...||+|+| +|.+|+.++++|.... .+|.+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 346899999 9999999999998764 5655444
No 114
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.58 E-value=0.58 Score=47.51 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|||.||+.+++.+.... ++|.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG---~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG---FPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999998763 88877763
No 115
>PLN02494 adenosylhomocysteinase
Probab=88.51 E-value=1.4 Score=47.91 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|+|.|||.||+.+++.+.... ++|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G---a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG---ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 48999999999999999998764 6877665
No 116
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.35 E-value=1.8 Score=42.29 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=27.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|||||.| .|++|..++.-+..|. -||+||--
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5899999 9999999999998886 69999974
No 117
>PLN02306 hydroxypyruvate reductase
Probab=88.24 E-value=0.58 Score=49.12 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHH-hCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~-~~~~~~~evvaInd 102 (442)
-+|||.|||+||+.+++.+. ... ++|++.+-
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fG---m~V~~~d~ 197 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDL 197 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC---CEEEEECC
Confidence 58999999999999999874 543 88877653
No 118
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.16 E-value=0.59 Score=49.05 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|||+|+|.||+.+++.+.... ++|++.+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G---~~V~~~d 146 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG---IKTLLCD 146 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC---CEEEEEC
Confidence 58999999999999999998764 8887664
No 119
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.05 E-value=2.4 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
+.||+|.|-|.||..++..+..+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 359999999999999998877654
No 120
>PLN03139 formate dehydrogenase; Provisional
Probab=87.85 E-value=0.59 Score=49.18 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|||+|+|+||+.+++.+.... ++|.+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG---~~V~~~d 229 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFN---CNLLYHD 229 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCC---CEEEEEC
Confidence 48999999999999999998753 7887654
No 121
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.81 E-value=0.69 Score=47.28 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||+|+|+||+.+++.+.... ++|++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d~ 177 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG---ATITAYDA 177 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 48999999999999999998753 78877763
No 122
>PRK14030 glutamate dehydrogenase; Provisional
Probab=87.48 E-value=2.9 Score=45.01 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=63.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC---------ChhhhhhhcccCcccccCCcceeeecCCcEEECC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~---------~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~G 138 (442)
..+|+|=|||.+|+..++.|++.. ..||+|.|.. +++.+.+|++|-..+|...... -+ .+.|
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~----~~--~~~g 298 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPY----AE--KFPG 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHH----Hh--cCCC
Confidence 469999999999999999998864 7999987632 2333444554432222110000 00 1112
Q ss_pred EEEEEEecCCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 139 KVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 139 k~I~v~~~~~p~~l~W~~~gvDiVie~-TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
- +.+. +.+ .|. ..+||.+=| ++.-++.+.|..-.+.+|| +|+=
T Consensus 299 a--~~i~---~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~E 342 (445)
T PRK14030 299 S--TFFA---GKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVAE 342 (445)
T ss_pred C--EEcC---Ccc-cee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEEe
Confidence 1 1111 222 253 578998877 5788899999887777886 4443
No 123
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=87.40 E-value=1 Score=43.88 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=66.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
..+|.|+|.|.+||.++.--+..+ ..|+++++=|+ +++ .-|+.-+++. | ....
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~-~~~~iv~~FDv-~~~----------~VG~~~~~v~--------V-------~~~d 136 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKK-NGMKIVAAFDV-DPD----------KVGTKIGDVP--------V-------YDLD 136 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhh-cCceEEEEecC-CHH----------HhCcccCCee--------e-------echH
Confidence 379999999999999876554432 35999999886 232 1244333222 2 1111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP 197 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~p 197 (442)
+.+.+ -.+.++|++|=|.+.-...+-|..-+++|.|.++==+|..=..|
T Consensus 137 ~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 137 DLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred HHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEecCC
Confidence 11111 12348999999999888888888999999998776666532344
No 124
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=87.20 E-value=2.1 Score=44.31 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=54.3
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
++||||.|. ++|+..++++...+ +.+++|||.|.. .+....+- ..||. + .+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~~-~erA~~~A---~~~gi-~-------------------~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQG-SERSRALA---HRLGV-P-------------------LY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcCC-HHHHHHHH---HHhCC-C-------------------cc--C
Confidence 489999999 67999999987753 259999999963 33222221 11221 0 00 1
Q ss_pred CCCCCCCCCccccEEEc--CCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 148 NPVNLPWGDLGIDLVIE--GTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie--~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
+.+++. .+.++|+|.= ++......+.+...+++|. .|++
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~ 95 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQ 95 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEE
Confidence 111221 1224555544 3345677788889999985 4665
No 125
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.20 E-value=0.83 Score=44.05 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=25.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|++||+|+|+|.||..+++.|........+|..++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 45799999999999999999886532123444443
No 126
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.20 E-value=2.7 Score=41.88 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=75.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhccc-----Cc--ccccCCcceeeecCCcEEECCEEEE
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKY-----DS--TLGIFEADVKPVGTDGISVDGKVIQ 142 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Llky-----DS--t~g~f~~~v~~~~~~~i~v~Gk~I~ 142 (442)
||||+|.|.+|+.++..+.... ++|+..+-. ++.+....++ |. ..|.....-. ...+ ..++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~---~~~~----~~l~ 74 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG---VDVLVFETT--EELATAGRNRIEKSLERAVSRGKLTERER---DAAL----ARLR 74 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEECC--HHHHHHHHHHHHHHHHHHHhcccCChhhH---HHHH----hCeE
Confidence 8999999999999998877653 677665532 3332221100 00 0122211100 0000 1122
Q ss_pred EEecCCCCCCCCCCccccEEEcCCCCCCCHhhH-----HHHH-HcCCCeEEEeCCCCC---------CCCceeec---cC
Q 013492 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGA-----GKHI-QAGAKKVLITAPGKG---------DIPTYVVG---VN 204 (442)
Q Consensus 143 v~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a-----~~hl-~aGAkkVIIsapsk~---------d~pt~V~g---VN 204 (442)
+.. +...+ .++|+||||...-...+.. +++. ..|+ ++.|+.|.- ..|--+.| .|
T Consensus 75 ~~~--~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~ 146 (286)
T PRK07819 75 FTT--DLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFN 146 (286)
T ss_pred eeC--CHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCC
Confidence 222 23222 3899999998755443322 2333 3344 888887631 11222222 22
Q ss_pred ccCCCCCCCeEecCCchhhhhHHHHHHHHHhhc
Q 013492 205 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKFG 237 (442)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG 237 (442)
+-.+.+--.||..+.+....+..+...+.+..|
T Consensus 147 P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 147 PVPVLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 222222235777777777777776666666677
No 127
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.19 E-value=1.4 Score=51.94 Aligned_cols=97 Identities=22% Similarity=0.215 Sum_probs=60.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE------------EEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE------------VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISV 136 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e------------vvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v 136 (442)
.||+|.|.|+||+..++.|...++ .+ +|+|.|. +++....+.+- + +
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~--~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~---~---~------------- 627 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKT--ISYYGDDSEEPTDVHVIVASL-YLKDAKETVEG---I---E------------- 627 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcC--ccccccccccccccEEEEECC-CHHHHHHHHHh---c---C-------------
Confidence 499999999999999999986542 44 6888885 23333222210 0 0
Q ss_pred CCEEEEEEecCCCCCCC-CCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 137 DGKVIQVVSNRNPVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 137 ~Gk~I~v~~~~~p~~l~-W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+-+.+.+ .-.|+.++. +- .++|+||-|++.+...+-+...+++|.. +++..
T Consensus 628 ~~~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH--vv~ek 679 (1042)
T PLN02819 628 NAEAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH--LVTAS 679 (1042)
T ss_pred CCceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC--EEECc
Confidence 0011122 012332221 10 2589999999999999999999999873 45543
No 128
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.75 E-value=1.1 Score=43.99 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=74.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhc-ccCcccccCCcceeeecCCcEEECC-EEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLL-KYDSTLGIFEADVKPVGTDGISVDG-KVIQVV 144 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~Ll-kyDSt~g~f~~~v~~~~~~~i~v~G-k~I~v~ 144 (442)
..||.|.|.|-+|..++..|....-+ ++.-|.+ ..++..+..-+ ...++.|+.+.++- ...-..+|- -.+...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~--~~~l~~inP~~~V~~~ 86 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVM--AERIRDINPECEVDAV 86 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEECchhhcchhCcChhhCCCcHHHHH--HHHHHHHCCCcEEEEe
Confidence 35899999999999999999865422 3333432 22333333222 22355676554321 011011221 112222
Q ss_pred ecC-CCCCCC-CCCccccEEEcCCCCCCCHhhHHHH-HHcCCCeEEEeCCCCCCCCceeeccCccCCCCCCCeEecCCch
Q 013492 145 SNR-NPVNLP-WGDLGIDLVIEGTGVFVDREGAGKH-IQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCT 221 (442)
Q Consensus 145 ~~~-~p~~l~-W~~~gvDiVie~TG~f~~~e~a~~h-l~aGAkkVIIsapsk~d~pt~V~gVN~~~y~~~~~IISnaSCT 221 (442)
... ++++++ +-..+.|+||+|+..+..+...-.+ .+.+. |++..+-....++|..--|+.-+.|
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~i-------------p~I~s~g~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKI-------------PVISSMGAGGKLDPTRIRVADISKT 153 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCC-------------CEEEEeCCcCCCCCCeEEEccEecc
Confidence 110 122211 1123589999999876554332222 22233 3332222333444444345555777
Q ss_pred hhhhHHHHHHHHHhhc
Q 013492 222 TNCLAPFVKVLDQKFG 237 (442)
Q Consensus 222 Tn~Lap~lkvL~~~fG 237 (442)
.+| |+++.+.++.-
T Consensus 154 ~~~--pla~~~R~~Lr 167 (231)
T cd00755 154 SGD--PLARKVRKRLR 167 (231)
T ss_pred ccC--cHHHHHHHHHH
Confidence 776 77777766543
No 129
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=86.62 E-value=0.6 Score=47.63 Aligned_cols=95 Identities=27% Similarity=0.379 Sum_probs=51.9
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCc-EEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCC
Q 013492 71 VAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 71 VaInGfGrIGr~~lr~l~~~~~~~~-evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p 149 (442)
|.|.|.|.||+.+++.|..+. ++ +|+ |-|. +.+.+..+.+. .....+.. ......|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~-va~r-~~~~~~~~~~~-------------~~~~~~~~-----~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVT-VADR-NPEKAERLAEK-------------LLGDRVEA-----VQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEE-EEES-SHHHHHHHHT---------------TTTTEEE-----EE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEE-EEEC-CHHHHHHHHhh-------------ccccceeE-----EEEecCCH
Confidence 689999999999999998874 35 544 4443 24443333311 00111111 11122233
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 150 ~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
..+.=--.+.|+||.|.|.|....-++..+++|+. .++
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~--yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVH--YVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E--EEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCC--eec
Confidence 22210112679999999999887888889999994 455
No 130
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.57 E-value=6.2 Score=39.37 Aligned_cols=139 Identities=22% Similarity=0.209 Sum_probs=67.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC-ChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~-~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+|.|.|.|.||...+..+.... .+|+++.-.. +.+.+..+.+ +|. +. ++-+.-.+..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~~~~~~~~~~~~~~----~Ga----------~~--v~~~~~~~~~--- 232 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG---FEVYVLNRRDPPDPKADIVEE----LGA----------TY--VNSSKTPVAE--- 232 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHH----cCC----------EE--ecCCccchhh---
Confidence 7999999999999988776653 4777775311 2222221111 121 00 1100000000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCC-CCCceeeccCccCCCCCCCeEecCCchhhhhHH
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~-d~pt~V~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (442)
.. .+ .++|+||||+|.-...+.+-..++.|.+-+++..++.+ ..++-...++...+.....|+..-.|+..-+..
T Consensus 233 -~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 308 (355)
T cd08230 233 -VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ 308 (355)
T ss_pred -hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH
Confidence 00 11 27899999999644445556677766653444333321 111100011112222334566655555445555
Q ss_pred HHHHHHH
Q 013492 228 FVKVLDQ 234 (442)
Q Consensus 228 ~lkvL~~ 234 (442)
+++.|.+
T Consensus 309 ~~~~l~~ 315 (355)
T cd08230 309 AVEDLAQ 315 (355)
T ss_pred HHHHHHh
Confidence 5555544
No 131
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.25 E-value=1.1 Score=40.49 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=23.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.|||++|+|+.|+.+++.|.... ++|.+-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeec
Confidence 59999999999999999998764 7876655
No 132
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=85.80 E-value=1.6 Score=39.53 Aligned_cols=115 Identities=19% Similarity=0.325 Sum_probs=57.5
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhc-ccCccccc-CCcce-eeecCCcEEECCEEEEEEec
Q 013492 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL-KYDSTLGI-FEADV-KPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 71 VaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Ll-kyDSt~g~-f~~~v-~~~~~~~i~v~Gk~I~v~~~ 146 (442)
|+|.| +|-||++.++.+...+ +.|+|+++.--.+.+.+.... +|...|-. ++.+. +... +.+.-.+..++++..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~-~~~~~~~~~~~v~~G 78 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELK-KALPSKGPGIEVLSG 78 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHH-HHHHHTTSSSEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHH-HHhhhcCCCCEEEeC
Confidence 68999 9999999999999886 479999998754555444333 22221100 00000 0000 000001111222221
Q ss_pred CCC-CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 147 RNP-VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 147 ~~p-~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
.+- .++- ....+|+|+.+.-.|...+-.-..+++|. ++.+-
T Consensus 79 ~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk-~iaLA 120 (129)
T PF02670_consen 79 PEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAGK-DIALA 120 (129)
T ss_dssp HHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTTS-EEEE-
T ss_pred hHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCCC-eEEEe
Confidence 110 0000 11267888888777777766667777773 45443
No 133
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=85.55 E-value=1.1 Score=44.05 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.0
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|.+||||.|+|.+|+.+++.+.... ++|.+.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 4569999999999999999998653 6776554
No 134
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.22 E-value=1.4 Score=38.83 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=50.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhccc-CcccccCCcceeeecCCcEEEC-CEEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVVSN 146 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~Llky-DSt~g~f~~~v~~~~~~~i~v~-Gk~I~v~~~ 146 (442)
||.|.|.|.+|..+++.|....-+ ++.-+.+ ..+++.+..-+-| .+..|+.+.+.- ...--.++ +-.+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~--~~~l~~~~p~v~i~~~~~ 76 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVA--ARRLNELNPGVNVTAVPE 76 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHH--HHHHHHHCCCcEEEEEee
Confidence 689999999999999999865422 3333432 3345555444434 233454433221 00000011 112222221
Q ss_pred C-CCCCCCCCCccccEEEcCCCCCCCHh
Q 013492 147 R-NPVNLPWGDLGIDLVIEGTGVFVDRE 173 (442)
Q Consensus 147 ~-~p~~l~W~~~gvDiVie~TG~f~~~e 173 (442)
. ++.+....-.+.|+||+|+..+..+.
T Consensus 77 ~~~~~~~~~~~~~~diVi~~~d~~~~~~ 104 (143)
T cd01483 77 GISEDNLDDFLDGVDLVIDAIDNIAVRR 104 (143)
T ss_pred ecChhhHHHHhcCCCEEEECCCCHHHHH
Confidence 1 11111111137899999999865544
No 135
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=85.05 E-value=1 Score=48.74 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|||+||+.+++.+.... ++|++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG---MKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 48999999999999999987763 89888764
No 136
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=84.99 E-value=1.5 Score=46.10 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-+|+|.|+|.||+.+++.|.... -.+|+.+|-.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G--~~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG--VGKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence 48999999999999999998753 2466666653
No 137
>PLN02712 arogenate dehydrogenase
Probab=84.63 E-value=1.4 Score=49.47 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=28.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
+++||||+|+|.||+.+++.|.... .+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 4579999999999999999998753 688877754
No 138
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.59 E-value=4.1 Score=41.05 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||+|.|+|.||+.+++.+.... .-+|..+|
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g--~~~V~v~~ 209 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG--VAEITIAN 209 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC--CCEEEEEe
Confidence 68999999999999999987642 13444454
No 139
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=84.56 E-value=2.7 Score=40.42 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=24.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|.| +|.||+.+++.|.++. .+|.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 578999 9999999999998764 67777654
No 140
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.45 E-value=2.7 Score=44.15 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaInd 102 (442)
.+|+|.|.|.||+.+++.|.... . +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 58999999999999999998653 3 5555654
No 141
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.33 E-value=1.2 Score=46.69 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|||+|+|.||+.+++.+.... ++|++.+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 58999999999999999998764 8887664
No 142
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.20 E-value=1.2 Score=48.33 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=26.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||.|||+||+.+++.+.... ++|++.+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 171 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG---MKVIAYDP 171 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 58999999999999999988763 89988875
No 143
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=84.05 E-value=3.2 Score=36.22 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=52.5
Q ss_pred eEEEEc----CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEe
Q 013492 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (442)
Q Consensus 70 kVaInG----fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~ 145 (442)
+|||+| -+..|+.+++.+.++. ++|..||-. ++. |.|.. .+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~y~ 47 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGE------------------ILGIK--CYP 47 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSE------------------ETTEE---BS
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceE------------------ECcEE--eec
Confidence 689999 5999999999998853 799999842 122 22211 111
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 146 ~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+..++| ..+|+++-+++.-...+..+.-.+.|++.|++...
T Consensus 48 --sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 48 --SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp --SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred --cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 111111 26899999998777777777777889999988764
No 144
>PRK08605 D-lactate dehydrogenase; Validated
Probab=84.04 E-value=1.3 Score=45.20 Aligned_cols=30 Identities=43% Similarity=0.610 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHH-hCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~-~~~~~~~evvaIn 101 (442)
.+|||+|+|+||+.+++.+. .. .++|.+.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~---g~~V~~~d 177 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGY---GSDVVAYD 177 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CCEEEEEC
Confidence 58999999999999999883 33 37876654
No 145
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.62 E-value=2.3 Score=43.43 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
+|+|.|.|.||-..+.++... +.-+|+++ |.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~-d~ 201 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL--GASVVIVV-DR 201 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCceEEEe-CC
Confidence 899999999998876555444 23466666 54
No 146
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.04 E-value=2.8 Score=42.29 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.2
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
+..+|+|.|+|.||+.++|.+.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 4579999999999999999998874
No 147
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=82.94 E-value=1.5 Score=45.61 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-+|||+|+|+||+.+++.|.... ++|++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G---~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG---VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc---CEEEEEECc
Confidence 47999999999999999998753 898777653
No 148
>PLN02256 arogenate dehydrogenase
Probab=82.72 E-value=1.9 Score=43.72 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=27.9
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.++||+|+|+|.+|..+++.|.... .+|++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 4579999999999999999997653 688877754
No 149
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.54 E-value=6.1 Score=38.94 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=22.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|+|.|.||...+..+.... ..+|.+-|
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G---~~~v~~~~ 176 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG---GSPPAVWE 176 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC---CceEEEeC
Confidence 6999999999999888776653 45444434
No 150
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=82.54 E-value=1.5 Score=36.61 Aligned_cols=93 Identities=27% Similarity=0.335 Sum_probs=56.1
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
+.||+|.|.|+.|+.++...+.. ..++++++-|.. ++. .| -.++| +.++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv~-~~~----------~G-------------~~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDVD-PEK----------IG-------------KEIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEEC-TTT----------TT-------------SEETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEcC-CCc----------cC-------------cEECC--EEeec--
Confidence 46899999999999887444433 237888887641 110 01 11333 34441
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+..++.= ..++|+.+=|.+.....+-+...+++|.|.+++=+|
T Consensus 53 ~~~~l~~-~~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 53 SMDELEE-FIEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp SHHHHHH-HCTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred cHHHhhh-hhCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1111110 013799999998777777888889999998876554
No 151
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.16 E-value=1.7 Score=42.68 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||+|+|.|.||..+++.|.... .+|.+++-
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEEC
Confidence 37999999999999999998763 67777753
No 152
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.96 E-value=2.5 Score=43.15 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.||+|.|.|.+|..++..+..+.- .+ +.+-|.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl--~~-i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNL--GD-VVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--Ce-EEEEeC
Confidence 489999999999999887776531 35 444453
No 153
>PRK06223 malate dehydrogenase; Reviewed
Probab=81.93 E-value=6.7 Score=38.96 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=23.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|.|.|.+|..++..+..+.- . ||+-+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-~-ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-G-DVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-e-EEEEEE
Confidence 599999999999999988876531 1 665553
No 154
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.33 E-value=2.3 Score=45.05 Aligned_cols=93 Identities=24% Similarity=0.257 Sum_probs=56.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+||-|.|.|.||+.+++-+..+.+ .+|.. -|. +++.+..+. +++.++ + +.+.+|- .|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~i-AdR-s~~~~~~i~--~~~~~~----v-----~~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTI-ADR-SKEKCARIA--ELIGGK----V-----EALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEE-EeC-CHHHHHHHH--hhcccc----c-----eeEEecc--------cC
Confidence 589999999999999998887754 56543 332 244444433 221111 1 1122221 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAk 184 (442)
+..+.=--.+.|+||.|.+.|.+..-.+..+++|..
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVD 94 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCC
Confidence 111000001449999999999999888899999996
No 155
>PRK08818 prephenate dehydrogenase; Provisional
Probab=80.65 E-value=4.1 Score=42.74 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=24.9
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 68 ~ikVaInGf-GrIGr~~lr~l~~~~~~~~evvaI 100 (442)
+.||+|+|. |.||+.+.+++.++. ..+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 468999998 999999999998652 3676554
No 156
>PLN02712 arogenate dehydrogenase
Probab=80.50 E-value=2.1 Score=48.04 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.5
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
++||||+|+|+||+.+++.|.... ++|++++..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 468999999999999999998763 688887653
No 157
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=79.97 E-value=4.8 Score=35.61 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-||.|.|.|-+||.++..|....- =+|.-+|-.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA--KEITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS--SEEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC--CEEEEEECC
Confidence 489999999999999999998742 246667753
No 158
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=79.60 E-value=4.6 Score=39.67 Aligned_cols=92 Identities=21% Similarity=0.099 Sum_probs=53.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
++++|.|+|.||.-+.+.|.... .||+-.|- .+++....+.+|=. -. |+..++.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag---~eV~igs~-r~~~~~~a~a~~l~--------------~~-------i~~~~~~d 56 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG---HEVIIGSS-RGPKALAAAAAALG--------------PL-------ITGGSNED 56 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC---CeEEEecC-CChhHHHHHHHhhc--------------cc-------cccCChHH
Confidence 58999999999999999998764 67765543 23444333332210 00 11112222
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
.. ...|+||-+.+-.--.+-...+.+.=..|+||+..
T Consensus 57 A~------~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 57 AA------ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HH------hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 21 25799998888554444444454422267999863
No 159
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=79.42 E-value=23 Score=34.40 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=51.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p 149 (442)
+|.|.|.|.+|+.+++.+.... .+|+++.+.. +....+.+ +|. + ..++- +++
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~--~~~~~~~~----~g~---~--------~~~~~--------~~~ 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG---AEVFAFTRSG--EHQELARE----LGA---D--------WAGDS--------DDL 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEcCCh--HHHHHHHH----hCC---c--------EEecc--------Ccc
Confidence 7899999999999888776653 6887776542 21111111 121 0 00110 000
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeE
Q 013492 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186 (442)
Q Consensus 150 ~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkV 186 (442)
.+.++|++++++|.....+.+..++..|..-+
T Consensus 222 -----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 222 -----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred -----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 12378999999887766777888988877533
No 160
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=79.04 E-value=4.2 Score=36.51 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCC
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~ 91 (442)
+||+|.|. |.||..++-.+..+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~ 24 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG 24 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 58999998 999999998888764
No 161
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=79.04 E-value=1.1 Score=34.19 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=18.4
Q ss_pred CcccccccccccCCCCcccCCC
Q 013492 18 KGFSEFSGLRNSASLPFGRKSS 39 (442)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~~ 39 (442)
.-.+-|+|||+.+.+|..||..
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK~~ 43 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRKSN 43 (45)
T ss_pred ceeeccccccccccCccccccC
Confidence 5678999999999998877654
No 162
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.68 E-value=2.4 Score=42.70 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..+|.|.|.|-+|-.++..|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 163
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=78.57 E-value=3.3 Score=43.96 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=32.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhh
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~ 111 (442)
.||+|.| +|-||++.++.+...++ .|+|+++.--.+.+.+..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~-~f~v~~Laa~~n~~~L~~ 44 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPD-HFQVVALSAGKNVALMVE 44 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCcc-ccEEEEEEcCCCHHHHHH
Confidence 3899999 99999999999877653 699999976445554433
No 164
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.05 E-value=8.2 Score=41.32 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=49.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
-||.|.|+|++|+..++.|..+. .+|++ .|.. ......+.+ +| +. + +.| ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~~-~~~~~~l~~----~g-----~~------~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPTV-CDDD-PDALRPHAE----RG-----VA------T-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcCC-HHHHHHHHh----CC-----CE------E-EcC-------cch
Confidence 38999999999999999888764 56554 6632 222222111 11 01 1 111 111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAk 184 (442)
+..+. +.|+||.+.|+-.+.+......+.|.+
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi~ 96 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGVP 96 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 22232 569999999987766655555666764
No 165
>PRK06545 prephenate dehydrogenase; Validated
Probab=77.83 E-value=6.8 Score=40.26 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=23.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||+|+|+|.||..+++.|.... .++.+.+.+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~~~~ 32 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFIIGYD 32 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 6999999999999999998763 234544443
No 166
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.79 E-value=12 Score=39.36 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-||.|.|.|.+|..+++.|..+. .+|+.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 38999999999999999998764 6766554
No 167
>PLN00106 malate dehydrogenase
Probab=77.43 E-value=16 Score=37.69 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.8
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCC
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~ 91 (442)
.||+|.|. |+||..++..+..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999997 999999999887553
No 168
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.00 E-value=14 Score=38.61 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=58.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
-+|+|.|+|-.|...+..+.... .+|+|+.-..+-..++.-| +....++.+ |
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEcC--------C
Confidence 48999999999988887776553 7999997543322222211 111223221 1
Q ss_pred CCCCC-CCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCC
Q 013492 149 PVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (442)
Q Consensus 149 p~~l~-W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsap 191 (442)
+..++ ..+ -+|++|++.| ..+-+.+-.-++.|-+-|++-.|
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 21111 111 1899999999 88888888888887766666555
No 169
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=76.53 E-value=13 Score=41.56 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-.|.|-| .|.||+.+++.|..+. .+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G---~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG---FRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 3688999 8999999999998764 67776643
No 170
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.61 E-value=11 Score=37.50 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
+|.|+|.|.||...+..+.... . .|+++.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~ 201 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG---AAEIVCAD 201 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEe
Confidence 7999999999999988877663 4 455443
No 171
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.12 E-value=3.9 Score=42.16 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
.||.|+|.|.+|..+++.|....
T Consensus 25 ~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999988654
No 172
>PRK08507 prephenate dehydrogenase; Validated
Probab=74.78 E-value=4.5 Score=39.62 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|+|+|.+|..+++.|.... ...+|.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d 32 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-LISKVYGYD 32 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 38999999999999999998653 124666654
No 173
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=74.71 E-value=4.1 Score=40.04 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=62.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCcceeeecCCcE-EEC-CEEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGI-SVD-GKVIQVVS 145 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~~~~~~i-~v~-Gk~I~v~~ 145 (442)
||.|.|.|-+|..+++.|....-+.+.| |.+ ..+...+..-+-|. +..|+.++++-. +.+ .++ +-.|....
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~i--vD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~---~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHV--IDMDTIDVSNLNRQFLFRPKDIGRPKSEVAA---EAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCEEcchhhccccCCChhhCChHHHHHHH---HHHHHHCCCCEEEEEe
Confidence 6899999999999999997654333433 332 33444443333233 234666554310 000 011 11112211
Q ss_pred cC-CC-CCCC-CCCccccEEEcCCCCCCCHhhHHH-HHHcCCCeEEEeCCCC---CCCCceeecc
Q 013492 146 NR-NP-VNLP-WGDLGIDLVIEGTGVFVDREGAGK-HIQAGAKKVLITAPGK---GDIPTYVVGV 203 (442)
Q Consensus 146 ~~-~p-~~l~-W~~~gvDiVie~TG~f~~~e~a~~-hl~aGAkkVIIsapsk---~d~pt~V~gV 203 (442)
.+ ++ ..++ ---.+.|+||+|+..+..+..... -.+.+. -+|.+... +..-.++++.
T Consensus 76 ~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g~~G~~G~v~vi~p~~ 138 (234)
T cd01484 76 NKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIV--PLIESGTEGFKGNAQVILPGM 138 (234)
T ss_pred ccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcccCCceEEEEEcCCC
Confidence 11 11 1111 001378999999998776654432 233443 34555432 3334455553
No 174
>PLN02688 pyrroline-5-carboxylate reductase
Probab=74.43 E-value=4.6 Score=38.93 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~-~~~evvaInd~ 103 (442)
+||+|+|+|.+|..+++.|..... .+.+|+..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999987531 12377766443
No 175
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=74.17 E-value=4.2 Score=44.22 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|+|.|||+|||.+++.+.... ++|++++
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 48999999999999999998774 6776554
No 176
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.15 E-value=4.8 Score=40.05 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=24.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
..||+|+|+|.||+.+++.+..... ..+|.+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~d 38 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGAD 38 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 3589999999999999999876531 13555554
No 177
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=73.87 E-value=4.6 Score=39.86 Aligned_cols=104 Identities=24% Similarity=0.423 Sum_probs=60.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC---------ChhhhhhhcccCccccc-CCcceeeecCCcEEEC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGI-FEADVKPVGTDGISVD 137 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~---------~~~~la~LlkyDSt~g~-f~~~v~~~~~~~i~v~ 137 (442)
..+|+|=|||.+|+.+++.|.+.. ..||+|.|.. +++.+..+. +. +|. +..-.. ...++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~~~~~-~~~~~---- 100 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELG---AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVDDYPL-ESPDG---- 100 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHSTTGTH-TCSST----
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccccccc-ccccc----
Confidence 368999999999999999999874 7999996632 233322221 11 111 111000 00000
Q ss_pred CEEEEEEecCCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 138 Gk~I~v~~~~~p~~l~W~~~gvDiVie~T-G~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.+.+.+. .++ | +..+||.+=|. +.-++.+.+...+++||| +|+-+
T Consensus 101 ---~~~~~~~--~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIveg 146 (244)
T PF00208_consen 101 ---AEYIPND--DEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEG 146 (244)
T ss_dssp ---SEEECHH--CHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEES
T ss_pred ---eeEeccc--ccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeC
Confidence 0111110 011 3 35899999886 677888888877888897 55544
No 178
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.74 E-value=4.5 Score=40.26 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||||+|+|.+|+.+++.|.+.. .+|+..|-
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 38999999999999999998763 67766654
No 179
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=73.14 E-value=2.6 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=20.9
Q ss_pred cCceeEEEEcCChhHHHHHHHHHhC
Q 013492 66 QAKLKVAINGFGRIGRNFLRCWHGR 90 (442)
Q Consensus 66 ~~~ikVaInGfGrIGr~~lr~l~~~ 90 (442)
.+.-+|+|.|+||||+.+++-|...
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhc
Confidence 3445899999999999999988764
No 180
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.03 E-value=4.5 Score=41.78 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|||.|.|+|++|+.+++.|..+. .+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 48999999999999999998764 68887854
No 181
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.95 E-value=5 Score=38.83 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
+||||+|+|++|+.+++.|....
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g 23 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSP 23 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC
Confidence 37999999999999999998653
No 182
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=72.93 E-value=4.1 Score=40.04 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||||+|+|.+|+.+++.|.... ++|...|-
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEcC
Confidence 6999999999999999998764 68776653
No 183
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.57 E-value=6.1 Score=35.15 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=26.3
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 71 VaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
|.|.| +|.||+.+++.|..++ .+|.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecC
Confidence 68999 8999999999999885 799888753
No 184
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=72.51 E-value=7.4 Score=38.24 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=52.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
-+|.|+|.|.||...+..+.... .. |+++... .+....+.+ +|. + ..++-+.-. ..
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~~--~~~~~~~~~----~ga---~--------~~i~~~~~~-~~-- 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDPS--PERLELAKA----LGA---D--------FVINSGQDD-VQ-- 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECCC--HHHHHHHHH----hCC---C--------EEEcCCcch-HH--
Confidence 47999999999999888776653 45 7766432 222222211 221 0 111110000 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
...++. ...++|+||||+|.....+.+-..++.|.+-+++..
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 000000 112789999999976554556677877775444443
No 185
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=72.50 E-value=16 Score=34.51 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=21.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-++.|.|||.+||-+++.+.... .. |.|.|.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G---a~-V~V~e~ 54 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG---AR-VTVTEI 54 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT----E-EEEE-S
T ss_pred CEEEEeCCCcccHHHHHHHhhCC---CE-EEEEEC
Confidence 37999999999999999998874 23 345554
No 186
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=72.48 E-value=4.6 Score=42.69 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=25.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.+||.||||||+++++++.... |.+++-.+.
T Consensus 148 TLgvlG~GrIGseVA~r~k~~g---m~vI~~dpi 178 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMG---MHVIGYDPI 178 (406)
T ss_pred EEEEeecccchHHHHHHHHhcC---ceEEeecCC
Confidence 6899999999999999988753 777665543
No 187
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.43 E-value=5.1 Score=39.91 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||||+|+|.+|+.+++.|.... ++|+..|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG---HEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 7999999999999999998763 67776653
No 188
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=72.32 E-value=2.4 Score=44.89 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=59.6
Q ss_pred EEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhc-ccCcccccCCcceeeec-CCcEEECCEEEEEEecCCC
Q 013492 73 ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL-KYDSTLGIFEADVKPVG-TDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 73 InG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Ll-kyDSt~g~f~~~v~~~~-~~~i~v~Gk~I~v~~~~~p 149 (442)
|.| +|-||++.++.+...++ +|+|+++.--.+.+.+.... +|...|-.........+ ...+ .|..++++...+-
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d-~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l--~~~~~~v~~G~~~ 77 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPE-HFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRL--SANTSKITYGTDG 77 (383)
T ss_pred CCccccHHHHHHHHHHHhCcc-ccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhc--cCCCcEEEECHHH
Confidence 568 99999999999887653 69999998754555444333 22222100000000000 0011 2212344432221
Q ss_pred -CC-CCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 150 -VN-LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 150 -~~-l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.+ ..+ ..+|+|+-+.-.+...+-.-..+++| |++.+.+
T Consensus 78 l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 78 LIAVATH--PGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred HHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 01 111 25899999877776666666678888 4465543
No 189
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.14 E-value=5.7 Score=39.69 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||+|.|.|.+|+.+.+.|.... .+|...|.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r 35 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG---HRVRVWSR 35 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998764 57665553
No 190
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.02 E-value=22 Score=34.41 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=50.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
-+|.|+|.|.+|+.+++.+.... .+++++... .+....+.+ +|. +.. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~---~~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGRH--SEKLALARR----LGV---ETV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC---cEE--------eCc--------cc
Confidence 47899999999999998887764 677666532 343333332 221 000 000 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAk 184 (442)
+ .++ .++|+++||+|.-...+.+..+++.+.+
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0 122 3799999999864444556677777664
No 191
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.66 E-value=7.3 Score=32.51 Aligned_cols=29 Identities=38% Similarity=0.656 Sum_probs=23.5
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 71 VaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|-|.|+|++|+.+++.|..+. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 568999999999999999853 68887875
No 192
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=71.61 E-value=9.8 Score=39.36 Aligned_cols=138 Identities=26% Similarity=0.286 Sum_probs=71.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCC-CcEEEEEec---CCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDS-PLEVVAIND---TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~-~~evvaInd---~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~ 144 (442)
+||+|.|.|.||..++-.+..+.-+ ++-++-|+. .+..- |-.|+.+ +.+....+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~~~-------------~~~~~~~i~ 59 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHAAA-------------PLGSDVKIT 59 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhcch-------------hccCceEEe
Confidence 4899999999999999988766433 455555552 11111 2212211 111112222
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCC----CHh------------hHHHHHHcC--CCeEEEeCCCCCCCCceeeccCcc
Q 013492 145 SNRNPVNLPWGDLGIDLVIEGTGVFV----DRE------------GAGKHIQAG--AKKVLITAPGKGDIPTYVVGVNAD 206 (442)
Q Consensus 145 ~~~~p~~l~W~~~gvDiVie~TG~f~----~~e------------~a~~hl~aG--AkkVIIsapsk~d~pt~V~gVN~~ 206 (442)
...+-..+ .|+|+||-+.|.-. +|. .+..-.+.+ +.-+|+|+|. |+-++++--+..
T Consensus 60 ~~~~y~~~----~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--D~~ty~~~k~sg 133 (313)
T COG0039 60 GDGDYEDL----KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--DILTYIAMKFSG 133 (313)
T ss_pred cCCChhhh----cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--HHHHHHHHHhcC
Confidence 21112222 38899988887433 221 111222222 3334567765 233333322211
Q ss_pred CCCCCCCeEecCCchhhhhHHHHHHHHHhhc
Q 013492 207 AYKPDEPIISNASCTTNCLAPFVKVLDQKFG 237 (442)
Q Consensus 207 ~y~~~~~IISnaSCTTn~Lap~lkvL~~~fG 237 (442)
. |.+++|. +-|+-=-+++-..|-++||
T Consensus 134 ~--p~~rvig--~gt~LDsaR~~~~lae~~~ 160 (313)
T COG0039 134 F--PKNRVIG--SGTVLDSARFRTFLAEKLG 160 (313)
T ss_pred C--Cccceec--ccchHHHHHHHHHHHHHhC
Confidence 1 4567663 4566666788888888888
No 193
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.56 E-value=3 Score=40.06 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..||.|.|.|.+|..++..|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999997654
No 194
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=71.54 E-value=5.4 Score=39.79 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||||+|+|++|..+++.|.... .+|++.|-
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEEC
Confidence 37999999999999999988753 68776653
No 195
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=71.49 E-value=19 Score=34.42 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.9
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|-|-| .|-||+.+++.|.++. .+|+++.-
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 489999 8999999999999874 68888875
No 196
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=71.13 E-value=20 Score=38.82 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=55.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC-CChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~-~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
..||+|.|+|+-|+.++|.|.++. .+|. ++|. ..+... .. . . ....++ .+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~-v~D~~~~~~~~--~~-----------~-~-~~~~~i-------~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVT-VSDDRPAPEGL--AA-----------Q-P-LLLEGI-------EVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEE-EEcCCCCccch--hh-----------h-h-hhccCc-------eeecC
Confidence 358999999999999999999874 5644 4552 111100 00 0 0 001111 12222
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAk 184 (442)
+.+. ..|. ..|+||-+=|...+.+...+..++|++
T Consensus 61 ~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 61 SHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 2222 3343 789999999999998888888889986
No 197
>PLN02214 cinnamoyl-CoA reductase
Probab=70.59 E-value=19 Score=36.21 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=25.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG---YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC
Confidence 4799999 8999999999998874 57777653
No 198
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.41 E-value=6.2 Score=43.55 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=30.5
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhh
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~ 111 (442)
+-+|-|.||||+||.+.|.+..++ .++++|.. |++.+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK---MRITVLER--DISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC---CCEEEEEC--CHHHHHH
Confidence 458999999999999999998764 78888864 3554433
No 199
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=69.67 E-value=3.6 Score=39.47 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..||+|.|.|-+|-.++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999987654
No 200
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=69.33 E-value=6.6 Score=36.96 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=22.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|||+|.|.|.+|-.++-++.+.. ++|+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 58999999999999988888764 7988875
No 201
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=69.29 E-value=23 Score=38.05 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=29.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG 104 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~ 104 (442)
.||+|=|||.+|+..++.+++.. -+||++.|..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~G---Akvva~sds~ 240 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELG---AKVVAVSDSK 240 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcC---CEEEEEEcCC
Confidence 58999999999999999998764 6999999853
No 202
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=69.26 E-value=4.3 Score=37.68 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~ 91 (442)
||+|.|.|-+|..++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999887654
No 203
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.96 E-value=11 Score=38.37 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
.||+|.|.|.||..++-.+..++- .-|++-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~-~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGL-ADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CCEEEEE
Confidence 599999999999999987776532 2355444
No 204
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.88 E-value=7.5 Score=38.62 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=26.2
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCC-CCcEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIN 101 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~-~~~evvaIn 101 (442)
|.+||+|+|.|.+|..+++.|...+. ...+|.+.+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 45689999999999999999987531 123565554
No 205
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.83 E-value=36 Score=32.96 Aligned_cols=137 Identities=19% Similarity=0.229 Sum_probs=67.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+|.|.|.|.||...+..+.... .. |+++ +. +.+.+..+.+ +|. + ..++.+.. . ..
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~-~~-~~~r~~~a~~----~Ga---~--------~~i~~~~~---~-~~ 178 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG---AARVVAA-DP-SPDRRELALS----FGA---T--------ALAEPEVL---A-ER 178 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEE-CC-CHHHHHHHHH----cCC---c--------EecCchhh---H-HH
Confidence 7999999999999888776653 44 6666 32 2222211111 221 0 01111000 0 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCC-CCCCCeEecCCchhhhhHH
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCLAP 227 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y-~~~~~IISnaSCTTn~Lap 227 (442)
-.++. ...++|+||||+|.-...+.+-..++.|.+-+++.....+ .+ ..++...+ .....|+..-..+...+..
T Consensus 179 ~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~ 253 (280)
T TIGR03366 179 QGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG-GP---VALDPEQVVRRWLTIRGVHNYEPRHLDQ 253 (280)
T ss_pred HHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC-Cc---eeeCHHHHHhCCcEEEecCCCCHHHHHH
Confidence 00011 1137999999999755555666777777654444433211 11 12232222 2234455544444445556
Q ss_pred HHHHHHHh
Q 013492 228 FVKVLDQK 235 (442)
Q Consensus 228 ~lkvL~~~ 235 (442)
++..|.+.
T Consensus 254 ~~~~l~~~ 261 (280)
T TIGR03366 254 AVRFLAAN 261 (280)
T ss_pred HHHHHHhh
Confidence 66666553
No 206
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=68.69 E-value=23 Score=35.77 Aligned_cols=95 Identities=23% Similarity=0.233 Sum_probs=49.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~-evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+|.|+|-|.||...+..+.... . +|+++.. +.+.+..+.+ +|. + -.++...-.... .
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~~~~~--~ 251 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA---T--------ATVNAGDPNAVE--Q 251 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC---c--------eEeCCCchhHHH--H
Confidence 7999999999998888776653 4 4655532 2333322221 221 0 011110000000 0
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
-.++. ..++|+||||+|.-...+.+-..++.|.+-|++
T Consensus 252 i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 252 VRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 00111 127899999999654555566677766643433
No 207
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=68.63 E-value=6.7 Score=43.54 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=29.2
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhh
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQA 109 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~l 109 (442)
.-+|-|.||||+||.++|.|.++. +++++|.. |++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v 436 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDH--DPDHI 436 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEEC--CHHHH
Confidence 358999999999999999998864 78888853 34444
No 208
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=68.37 E-value=7.9 Score=36.11 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=22.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||||+|.|.+|+.++..+.... ++|+-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEE
Confidence 7999999999999998888764 6765554
No 209
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.34 E-value=25 Score=35.23 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
-+|.|.|.|.||...+..+.... .+ |+++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999888776653 43 66664
No 210
>PLN00203 glutamyl-tRNA reductase
Probab=66.93 E-value=14 Score=40.48 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=26.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.||+|+|.|.+|+.+++.|..++ .-+|..+|-.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G--~~~V~V~nRs 299 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKG--CTKMVVVNRS 299 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCC--CCeEEEEeCC
Confidence 58999999999999999998764 1256666653
No 211
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=66.50 E-value=4.5 Score=38.54 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
+.||+|.|.|.+|..++..|....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999887653
No 212
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=65.82 E-value=7.9 Score=41.26 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|+|.|||.||+.+++.+.... .+|+++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 48999999999999999888764 6776654
No 213
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=65.23 E-value=15 Score=37.23 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.5
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|.|. |.+|..++..+..++- ..+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEE
Confidence 58999995 9999999999887642 23666654
No 214
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=65.22 E-value=25 Score=38.84 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=27.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||.|-| +|.||+.+++.|..+. ...+|+++..
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 5899999 9999999999998763 2378888753
No 215
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=65.18 E-value=9.6 Score=37.47 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|.|.|.+|..++..|.... .+|..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 58999999999999999998753 5665554
No 216
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=65.13 E-value=8 Score=40.14 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||+|+|.+|+.+++.|.... ++|+..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG---~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG---VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC---CEEEEEEC
Confidence 47999999999999999997653 68765544
No 217
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.84 E-value=24 Score=35.74 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|.|.|.||...+..+.... .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 7999999999999888776653 56766644
No 218
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.72 E-value=8.2 Score=40.18 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||+|.|.|.+|..++.+|.+.. .+|++++-
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEEC
Confidence 38999999999999999998764 67877753
No 219
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=64.58 E-value=5.1 Score=37.95 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=53.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCcceeeecCCcE-EEC-CEEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGI-SVD-GKVIQVV 144 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~~~~~~i-~v~-Gk~I~v~ 144 (442)
-||.|.|.|.+|..+++.|....-+ ++..+.+ ..+.+.+..-+-|+ +..|+.+.+.- .+.| .+| .-.+...
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~---~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA---AQRLRELNSDIQVTAL 96 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCCEEcccchhhhhccChhhCCChHHHHH---HHHHHHhCCCCEEEEe
Confidence 5899999999999999998876422 3433443 22333333222122 12344333211 0011 011 1122222
Q ss_pred ecC-CCCCCCCCCccccEEEcCCCCCCCHhhHHH-HHHcCC
Q 013492 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGA 183 (442)
Q Consensus 145 ~~~-~p~~l~W~~~gvDiVie~TG~f~~~e~a~~-hl~aGA 183 (442)
... ++.+++---.+.|+||+|+..+..+..... ..+.+.
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 111 122222112378999999998766654432 233444
No 220
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.05 E-value=10 Score=41.07 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred cCceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 66 ~~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+++=+|-|.|+|++||.+++.+.+++ .+++.|..
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 44568999999999999999998774 68888864
No 221
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=63.95 E-value=12 Score=39.77 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=33.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhh
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS 110 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la 110 (442)
.|+.|.| +|-||.+.|+.+...++ .|+|+|+.--..++.+.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~-~f~vval~ag~n~~~l~ 43 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPD-KFEVVALAAGKNVELLA 43 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCC-cEEEEEEecCCcHHHHH
Confidence 4899999 99999999999988764 69999998754555443
No 222
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=63.81 E-value=10 Score=37.46 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||||+|.|.+|..+++.+.... ++|+..+-
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~ 35 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAG---MDVWLLDS 35 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcC---CeEEEEeC
Confidence 7999999999999999988763 68776653
No 223
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.48 E-value=69 Score=30.56 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-||-|+|.|.+|...++.|.+.. -+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999888764 46666664
No 224
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=62.65 E-value=61 Score=35.72 Aligned_cols=30 Identities=23% Similarity=0.103 Sum_probs=23.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
.-||.|.|.|.||...++++.... -+|+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~ 194 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG---AIVRAF 194 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEE
Confidence 359999999999999999888764 255544
No 225
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=62.41 E-value=10 Score=37.92 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||||+|.|++|..+++.|.... ++|...|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 7999999999999999998764 5665444
No 226
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=62.32 E-value=35 Score=35.68 Aligned_cols=47 Identities=28% Similarity=0.355 Sum_probs=36.0
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEE-ecCCChhhhhhhcccC
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI-NDTGGVKQASHLLKYD 116 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaI-nd~~~~~~la~LlkyD 116 (442)
+..+|-|-| .|-||.-+++.|+.|. -.|.|- .|..+.+...||.+.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhcc
Confidence 446899999 9999999999999985 566654 4566666666777655
No 227
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=61.59 E-value=13 Score=36.84 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~-~~~evvaInd 102 (442)
.||+|.|+|.+|..+++.|..... .+.+|++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 589999999999999999886531 1246777765
No 228
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=61.22 E-value=22 Score=35.80 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+|.|.||...++.+.... ..++++.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~ 212 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISS 212 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeC
Confidence 47899999999999988777653 56666654
No 229
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=61.06 E-value=11 Score=38.61 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||||+|+|.+|+.+++.|.... ++++..++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999998753 56655444
No 230
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=61.02 E-value=12 Score=38.93 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=30.5
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG 104 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~ 104 (442)
|.++|-|-|||.+|+..+|.+...+ .+|+|+.-+..
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akp--e~elvgawv~s 36 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKP--ELELVGAWVHS 36 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCC--CCceEEEEecC
Confidence 6689999999999999999998763 59999987643
No 231
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=60.93 E-value=6.2 Score=38.69 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=49.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCccee---e-ecCCcEEECCEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVK---P-VGTDGISVDGKVIQ 142 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~---~-~~~~~i~v~Gk~I~ 142 (442)
-||.|.|.|-+|..+++.|..-.-+.+. -|.+ ..+.+.+..-+-|+ ...|+.+.++- . .-+..+. |.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~--lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~-----i~ 105 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLT--LVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIA-----IE 105 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCE-----EE
Confidence 5899999999999999998765422233 2332 22343333322222 22355443221 0 0011222 22
Q ss_pred EEecC-CCCCCC--CCCccccEEEcCCCCCCCHhh
Q 013492 143 VVSNR-NPVNLP--WGDLGIDLVIEGTGVFVDREG 174 (442)
Q Consensus 143 v~~~~-~p~~l~--W~~~gvDiVie~TG~f~~~e~ 174 (442)
....+ ++.+++ |. +.|+||+|+..+..+..
T Consensus 106 ~~~~~i~~~~~~~~~~--~~DiVi~~~D~~~~r~~ 138 (245)
T PRK05690 106 TINARLDDDELAALIA--GHDLVLDCTDNVATRNQ 138 (245)
T ss_pred EEeccCCHHHHHHHHh--cCCEEEecCCCHHHHHH
Confidence 22211 122221 32 78999999998766543
No 232
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.75 E-value=13 Score=36.59 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~-~~~~evvaInd 102 (442)
+||+|+|.|.+|+.+++.|.... ..+.+|+..|.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 48999999999999999998753 11245655553
No 233
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=60.70 E-value=22 Score=39.78 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||+|.|+|.+|+.+++.|..... ..+|++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 589999999999999999986531 236666653
No 234
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=60.56 E-value=14 Score=35.15 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|||+|.| .|.+|..+++.|.... .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4799997 9999999999998763 4655443
No 235
>PLN02740 Alcohol dehydrogenase-like
Probab=59.89 E-value=17 Score=37.03 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
-+|.|+|.|.||...++.+.... . +|+++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 37999999999999988877653 4 466664
No 236
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=59.56 E-value=13 Score=36.61 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=24.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||+|+|.|.+|+.++..+.... ++|+.++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G---~~V~l~d 33 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG---YDVTIVD 33 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcC---CeEEEEe
Confidence 7999999999999999988764 6776665
No 237
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.50 E-value=14 Score=36.90 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
++||+|.|.|.||..+...|....
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g 28 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG 28 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 468999999999999998887653
No 238
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=59.30 E-value=15 Score=37.51 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~ 91 (442)
||+|+|.|.||..++-.+..++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988777653
No 239
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=58.85 E-value=13 Score=39.12 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=26.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||+|.|.|.+|..++.+|..+. .+|++++-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeC
Confidence 58999999999999999998764 78888863
No 240
>PLN02602 lactate dehydrogenase
Probab=58.74 E-value=17 Score=37.80 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
.||+|.|.|.||..++-.+..++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~ 60 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD 60 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 59999999999999998777653
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=58.59 E-value=14 Score=37.07 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||+|.|.|.+|..++..|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 48999999999999999988753 57766664
No 242
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.53 E-value=13 Score=36.59 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||+|+|.|.+|+.++..+.... .+|+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 7999999999999999988763 5666554
No 243
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.51 E-value=15 Score=35.75 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|.|.|.+|..++..|.... .+|..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 47999999999999998887653 4665554
No 244
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=58.19 E-value=62 Score=31.93 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=47.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
-+|.|.|.|.+|+.+++.+.... .+++++... .+...++.+ +|. +. .++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~----~g~----------~~-vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFSRS--PSKKEDALK----LGA----------DE-FIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC----------cE-EecCcchhh-----
Confidence 36888899999998887766543 566666432 222222211 220 00 011100000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAk 184 (442)
...+ ..++|+|+||+|.-...+.+..++..+.+
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~ 258 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGGT 258 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCCE
Confidence 0011 24799999999976445666677766553
No 245
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=57.67 E-value=21 Score=36.61 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.5
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHhC
Q 013492 68 KLKVAINGF-GRIGRNFLRCWHGR 90 (442)
Q Consensus 68 ~ikVaInGf-GrIGr~~lr~l~~~ 90 (442)
+.||+|.|. |.||..++-.+..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 369999997 99999999877754
No 246
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.56 E-value=14 Score=36.89 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||+|+|.|.+|..++..+..+. .+|+.++-
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 38999999999999999888764 67776654
No 247
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.44 E-value=14 Score=36.20 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||+|+|.|.+|..++..+.... .+|+.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 7999999999999999988764 5776664
No 248
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=57.36 E-value=25 Score=34.10 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=25.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999 9999999999999874 5777664
No 249
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=57.05 E-value=17 Score=39.22 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=78.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCC---CCcEEEEEec-CCChhhhhhhcccC-cccccCCcceeeecCCcE-EEC-CEEEE
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKD---SPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGI-SVD-GKVIQ 142 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~---~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~~~~~~i-~v~-Gk~I~ 142 (442)
||.|+|.|.||..+++.|....- ++=+|.-+.+ ..+...+..-+-|. ...|+.++.+-. +.+ .+| +-.|.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa---~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAA---AAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHH---HHHHHHCCCCEEE
Confidence 68999999999999999876531 0013332332 33444443322222 223655433210 000 011 11122
Q ss_pred EEecC-CCCC---CC---CCCccccEEEcCCCCCCCHhhHH-HHHHcCCCeEEEeCCC---CCCCCceeeccCccCCCC-
Q 013492 143 VVSNR-NPVN---LP---WGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPG---KGDIPTYVVGVNADAYKP- 210 (442)
Q Consensus 143 v~~~~-~p~~---l~---W~~~gvDiVie~TG~f~~~e~a~-~hl~aGAkkVIIsaps---k~d~pt~V~gVN~~~y~~- 210 (442)
....+ ++.+ ++ |. +.|+|++|...+-++.... .....+. -+|.+.. ++.+-++++++. +.|..
T Consensus 78 a~~~~v~~~~~~~~~~~f~~--~~DvVi~alDn~~aR~~vn~~C~~~~i--Pli~~gt~G~~G~v~v~iP~~t-e~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWE--KLDGVANALDNVDARMYVDRRCVYYRK--PLLESGTLGTKGNTQVVIPHLT-ESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhc--CCCEEEECCCCHHHHHHHHHHHHHhCC--CEEEEecccceeEEEEEeCCCC-CCccCC
Confidence 22211 1111 11 33 7899999998876654433 2333444 3444433 345566777653 23331
Q ss_pred -CCCeEecCCchh--------hhhHHHHHHHHHhhccc
Q 013492 211 -DEPIISNASCTT--------NCLAPFVKVLDQKFGKY 239 (442)
Q Consensus 211 -~~~IISnaSCTT--------n~Lap~lkvL~~~fG~~ 239 (442)
+..--+.++||- .|+.=.-...++.|++.
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~ 190 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQP 190 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccc
Confidence 111124556664 56655555556666633
No 250
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=56.80 E-value=6.6 Score=40.58 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~ 91 (442)
||.|.|.|-+|-.+++.|..-.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998654
No 251
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=56.19 E-value=15 Score=36.62 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=24.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||+|+|.|.+|..+++.|.... .+|...|-
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 8999999999999999998764 57766654
No 252
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=56.08 E-value=14 Score=35.31 Aligned_cols=31 Identities=35% Similarity=0.395 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd 102 (442)
-+|.|+|.|.+|+.+++.+.... ++ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC
Confidence 37899999999999998887764 56 666654
No 253
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=55.85 E-value=49 Score=33.04 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|.|.|.|.||...+..+.... ..|+++.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 37999999999999988877663 4676664
No 254
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.72 E-value=17 Score=36.01 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||+|+|.|.+|..++..+.... .+|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 37999999999999999887653 6776665
No 255
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=55.46 E-value=56 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=23.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaInd 102 (442)
-+|.|+|.|.+|+.+++.+.... . .|+++..
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~~ 210 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAG---ARRVIVIDG 210 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEcC
Confidence 37899999999999988777653 5 6666643
No 256
>PRK07680 late competence protein ComER; Validated
Probab=55.35 E-value=18 Score=35.34 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGR 90 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~ 90 (442)
+||+|+|.|.+|+.+++.|...
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 3799999999999999998765
No 257
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=55.25 E-value=35 Score=34.72 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=53.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
-||-|.| +|++|..+++-+..-.. + .+.+||--. .|+. +.|. +.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~-~-~v~~V~p~~---------~~~~------------------v~G~--~~y--~ 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGT-N-IVGGVTPGK---------GGTT------------------VLGL--PVF--D 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCC-C-EEEEECCCC---------Ccce------------------ecCe--ecc--C
Confidence 4899999 99999999888876542 2 666677310 0111 1121 111 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
.-.++|..- ++|+++=+.+...-.+-.+...+.|+|.+||
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 223344221 3799999988776666677777889988755
No 258
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=55.22 E-value=11 Score=38.63 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=28.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCC------CCcEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKD------SPLEVVAINDT 103 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~------~~~evvaInd~ 103 (442)
++.|+|+|.|.|||.++..+...+. -.+.||+|.|.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 5789999999999999987764321 14789999884
No 259
>PRK08618 ornithine cyclodeaminase; Validated
Probab=54.96 E-value=23 Score=35.95 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-+|+|.|.|.+||..++++.... .++-|.|-+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC--CccEEEEECC
Confidence 48999999999999998876432 2566666654
No 260
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=54.70 E-value=17 Score=35.90 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=26.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|||-|.| .|.||+.+.+.+..+. +++++++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATS 31 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeC
Confidence 6999999 9999999999998753 8998885
No 261
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=54.38 E-value=48 Score=37.87 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHH-HHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~-lr~l~~~~~~~~evvaInd~ 103 (442)
+|.|.|.|..|+.. ++.|..+. .+|. +.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V~-~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSVS-GSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeEE-EECC
Confidence 59999999999998 88888764 5654 5664
No 262
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=54.24 E-value=9.7 Score=37.33 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCcceee----ecCCcEEECCEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKVIQ 142 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~----~~~~~i~v~Gk~I~ 142 (442)
.||.|.|.|-+|..++..|....-+ +++-|.+ ..+...+..-+-|+ +.-|+.+.++-. .-+..+.| .
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i-----~ 97 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI-----N 97 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEE-----E
Confidence 5899999999999999999865422 3332332 22333332222222 234554433210 01122222 2
Q ss_pred EEecC-CCCCCCCCCccccEEEcCCCCCCCHhhH
Q 013492 143 VVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGA 175 (442)
Q Consensus 143 v~~~~-~p~~l~W~~~gvDiVie~TG~f~~~e~a 175 (442)
....+ ++.+++=--.+.|+||+|+..+.++...
T Consensus 98 ~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~l 131 (240)
T TIGR02355 98 PINAKLDDAELAALIAEHDIVVDCTDNVEVRNQL 131 (240)
T ss_pred EEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHH
Confidence 22211 1111110013789999999988766443
No 263
>PRK06444 prephenate dehydrogenase; Provisional
Probab=54.16 E-value=15 Score=35.29 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGR 90 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~ 90 (442)
+||+|+| .|+.||.+.+.+...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 4899999 799999999988654
No 264
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=54.00 E-value=19 Score=36.16 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=20.1
Q ss_pred CceeEEEEcCChhHHHHHHHHHhC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGR 90 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~ 90 (442)
|++||+|.|.|.||..+.-.|...
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~ 24 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARA 24 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhC
Confidence 457999999999999888777654
No 265
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=53.95 E-value=24 Score=32.25 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.||.|.|.|++|+..++.+...+ .+++.+.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCC---CEEEeccCC
Confidence 79999999999999999998875 787777653
No 266
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=53.67 E-value=25 Score=35.28 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaInd 102 (442)
-+|.|.|.|.||...++.+.... . .|+++..
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~~ 220 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG---ASRIIGVDL 220 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEcC
Confidence 47999999999999988877653 4 5766643
No 267
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=53.65 E-value=18 Score=38.89 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||||+|.|.+|..++..+.... ++|...+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G---~~V~v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG---IDVAVFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 48999999999999999888764 6766554
No 268
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=53.51 E-value=12 Score=36.47 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGR 90 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~ 90 (442)
+||+|.|+|.+|..+++.|.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 5899999999999999999865
No 269
>PRK08655 prephenate dehydrogenase; Provisional
Probab=53.10 E-value=18 Score=38.43 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|+| +|.+|+.+++.+.... .+|.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4899998 9999999999998764 5666554
No 270
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.01 E-value=74 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|.|+|+.|+.+++.|..+. .+|.+ .|
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G---~~v~~-~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG---ARLRV-AD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC---CEEEE-Ec
Confidence 7999999999999999998874 57654 44
No 271
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=52.85 E-value=27 Score=36.27 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=26.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||.|.| .|.||+.+++.|.++. .+|+++.-
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R 92 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRG---YNVVAVAR 92 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEe
Confidence 5899999 9999999999998874 68877753
No 272
>PLN02778 3,5-epimerase/4-reductase
Probab=52.03 E-value=23 Score=35.15 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=25.9
Q ss_pred ccCceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEE
Q 013492 65 AQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVA 99 (442)
Q Consensus 65 ~~~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evva 99 (442)
..+++||-|-| .|.||+.+++.|..+. .+|+.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g---~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQG---IDFHY 38 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC---CEEEE
Confidence 34567999999 9999999999998874 46643
No 273
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.91 E-value=78 Score=33.14 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-|+|.|.|.+|+.++|.|..+. .+| .+.|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v-~~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPF-AVMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeE-EEEeC
Confidence 5899999999999999998874 564 45663
No 274
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=51.50 E-value=8.9 Score=36.78 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCccccccccc-ccccCCCcccccccccccCCCCcccCCCCcc
Q 013492 1 MASATLSVAKS-ALQGNGKGFSEFSGLRNSASLPFGRKSSDDF 42 (442)
Q Consensus 1 ~a~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 42 (442)
||+.+++.+.+ +..+...-.+-|+|||+.+..|..++...++
T Consensus 1 Mas~~~~s~~~~~~~~qas~vapf~gLKs~~~fp~~~k~~~~~ 43 (176)
T PLN02289 1 MASSMLSSAAVATSPAQATMVAPFTGLKSSAAFPVTRKANNDI 43 (176)
T ss_pred CcchhhhcccccccccccccccccccccccccCcceeeccccc
Confidence 67765544332 1111124678999999998888777654333
No 275
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=51.46 E-value=14 Score=36.53 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
+|.|+|.|.+|+..++.+.... . .|+++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 7899999999999988887763 5 555554
No 276
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=51.31 E-value=16 Score=35.65 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaI 100 (442)
-+|.|+|.|.+|+.+++.+..+. + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 37899999999999998887764 4 67777
No 277
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.22 E-value=22 Score=35.00 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||+|+|.|.+|..++..+.... ++|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 47999999999999999888764 6766554
No 278
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.18 E-value=50 Score=34.92 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=24.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
||+|.|+|+.|+.+++.|..+. .+|. +.|.
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~ 45 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLG---AKVT-AFDK 45 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCC---CEEE-EECC
Confidence 8999999999999999988774 5644 4553
No 279
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.98 E-value=47 Score=33.22 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=20.6
Q ss_pred eEEEEcCChhHHHHHHHHHh-CCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHG-RKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~-~~~~~~evvaIn 101 (442)
+|.|.|.|.||...+..+.. .. ...|+++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYP--ESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 79999999999987766543 21 13555553
No 280
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.90 E-value=78 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
-+|.|+|.|.+|+.+++.+.... .. |+++.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~ 129 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVD 129 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEC
Confidence 36899999999999888776653 45 66664
No 281
>PRK07877 hypothetical protein; Provisional
Probab=50.90 E-value=12 Score=42.81 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=57.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCC-CCcEEEEEec-CCChhhhhhhcccCcccccCCcceeeecCCcEEECC-EEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVV 144 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~-~~~evvaInd-~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~G-k~I~v~ 144 (442)
+-||+|.|.| +|-.++..|....- +.+-| |.. ..++.++-..+-..+..|+.+..+- ...--.+|- -.|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~l--vD~D~ve~sNLnRq~~~~~diG~~Kv~~a--~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRL--ADFDTLELSNLNRVPAGVFDLGVNKAVVA--ARRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEE--EcCCEEcccccccccCChhhcccHHHHHH--HHHHHHHCCCCEEEEE
Confidence 4689999999 89999988876531 22332 221 2233333232211223465544321 111111221 123333
Q ss_pred ecC-CCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCCeEEEeCC
Q 013492 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAP 191 (442)
Q Consensus 145 ~~~-~p~~l~W~~~gvDiVie~TG~f~~~e~a~-~hl~aGAkkVIIsap 191 (442)
.+. ++++++=--.++|+||||+..|-++-... ...+.|.. +|++.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP--~i~~~ 228 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIP--VLMAT 228 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC--EEEEc
Confidence 322 33333211137999999999987664433 23344553 34444
No 282
>PRK06153 hypothetical protein; Provisional
Probab=50.89 E-value=12 Score=40.02 Aligned_cols=102 Identities=15% Similarity=-0.008 Sum_probs=51.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhc-ccC-cccccCCcceeeecCCcE-EECCEEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLL-KYD-STLGIFEADVKPVGTDGI-SVDGKVIQVV 144 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~Ll-kyD-St~g~f~~~v~~~~~~~i-~v~Gk~I~v~ 144 (442)
.||+|+|.|-+|-.++..|..-.- -+|+-|.+ ..+...+-..+ .|. ...|+-...++... +.+ .++- .|...
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa-~rl~~in~-~I~~~ 252 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPV--REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFK-SRYSNMRR-GIVPH 252 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCC--CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHH-HHHHHhCC-eEEEE
Confidence 589999999999999999987642 35554543 22333332222 111 22344111121111 111 0221 12222
Q ss_pred ec-CCCCCCCCCCccccEEEcCCCCCCCHhhH
Q 013492 145 SN-RNPVNLPWGDLGIDLVIEGTGVFVDREGA 175 (442)
Q Consensus 145 ~~-~~p~~l~W~~~gvDiVie~TG~f~~~e~a 175 (442)
.+ -++.+++. -.++|+||+|+..+.+|...
T Consensus 253 ~~~I~~~n~~~-L~~~DiV~dcvDn~~aR~~l 283 (393)
T PRK06153 253 PEYIDEDNVDE-LDGFTFVFVCVDKGSSRKLI 283 (393)
T ss_pred eecCCHHHHHH-hcCCCEEEEcCCCHHHHHHH
Confidence 11 13343331 24799999999988776544
No 283
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=50.68 E-value=21 Score=36.84 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+.+|-|.|+|++|+.+++.|..+. .+++.|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 468999999999999999998764 67777753
No 284
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=50.63 E-value=21 Score=36.76 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=49.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec--CCChhhhhhhcccC-cccccCCcceee----ecCCcEEECCEEEE
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND--TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKVIQ 142 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd--~~~~~~la~LlkyD-St~g~f~~~v~~----~~~~~i~v~Gk~I~ 142 (442)
||.|+|.|-+|-.+++.|....-+.+. |-| ..+...+..-+-|. ...|+.++++-. .-+..+.| .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~It---IvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V-----~ 72 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIH---IIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKI-----V 72 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEE---EEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeE-----E
Confidence 689999999999999988765322233 344 33444444333222 123555443210 00122222 2
Q ss_pred EEecC-CCCC--CCCCCccccEEEcCCCCCCCHhhHH
Q 013492 143 VVSNR-NPVN--LPWGDLGIDLVIEGTGVFVDREGAG 176 (442)
Q Consensus 143 v~~~~-~p~~--l~W~~~gvDiVie~TG~f~~~e~a~ 176 (442)
....+ .... ..|- .+.|+||.|...+..+....
T Consensus 73 ~~~~~i~~~~~~~~f~-~~~DvVv~a~Dn~~ar~~in 108 (312)
T cd01489 73 AYHANIKDPDFNVEFF-KQFDLVFNALDNLAARRHVN 108 (312)
T ss_pred EEeccCCCccchHHHH-hcCCEEEECCCCHHHHHHHH
Confidence 22111 0101 1111 37899999998766554433
No 285
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.56 E-value=13 Score=38.47 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=53.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCcceee----ecCCcEEECCEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKVI 141 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~----~~~~~i~v~Gk~I 141 (442)
..||.|.|.|-+|..++..|....-+.+.+ |.+ ..+...+..-+-|+ ...|+.+.+.-. .-+..+.|
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~l--vD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v----- 100 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITI--IDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKV----- 100 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEE-----
Confidence 468999999999999999987654232332 332 22333332222222 123443322110 01122222
Q ss_pred EEEecC-CCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCC
Q 013492 142 QVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAK 184 (442)
Q Consensus 142 ~v~~~~-~p~~l~W~~~gvDiVie~TG~f~~~e~a~-~hl~aGAk 184 (442)
.....+ ++++..=--.+.|+||+|+..+.++.... ...+.|..
T Consensus 101 ~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 101 TVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred EEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 222111 12111000137899999999887775433 23444553
No 286
>PLN02427 UDP-apiose/xylose synthase
Probab=50.41 E-value=27 Score=35.42 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.3
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+||.|-| .|.||+.+++.|..+. ..+|+++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 35899999 9999999999998763 268888864
No 287
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=50.29 E-value=19 Score=37.75 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=28.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcc
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK 114 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Llk 114 (442)
|||+|.|.|.+|..++.++. .. ++|++++- +.+.+..+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G---~~VigvD~--d~~kv~~l~~ 40 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QN---HEVVALDI--LPSRVAMLND 40 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hC---CcEEEEEC--CHHHHHHHHc
Confidence 38999999999999997665 32 78888874 3444444444
No 288
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=50.29 E-value=72 Score=33.13 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=24.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
||.|.|.|.+|+.++|.|..+. .+| .++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V-~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEV-TVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEE-EEEeC
Confidence 5899999999999999998875 564 45663
No 289
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=50.11 E-value=53 Score=33.70 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|.|.|.||...+..+.... .+++++..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~~ 210 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVISR 210 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEeC
Confidence 37899999999999988777664 56766643
No 290
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=50.05 E-value=23 Score=35.77 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=26.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~-~~~evvaInd~ 103 (442)
+|||+.|+|.+|+.+++-|...+. ...+|...|..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC
Confidence 589999999999999999998752 23566555543
No 291
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=50.03 E-value=22 Score=34.72 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||+|.|.|.||..+...|.... .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g---~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG---RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC---CceEEEe
Confidence 48999999999999999888653 3554444
No 292
>PRK07201 short chain dehydrogenase; Provisional
Probab=50.00 E-value=1.1e+02 Score=33.33 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|||-|-| .|.||+.+++.|...+ ...+|.++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 3799999 9999999999998522 1367877765
No 293
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.64 E-value=1e+02 Score=32.14 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=49.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCC-hhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~-~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
||.|.|+|..|+..++.|..+. .+|.+ .|... +..... .+. ++. +. ....+
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G---~~v~~-~D~~~~~~~~~~-----------------l~~-g~~-----~~-~~~~~ 59 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARG---VTPRV-IDTRITPPGLDK-----------------LPE-NVE-----RH-TGSLN 59 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CeEEE-EcCCCCchhHHH-----------------Hhc-CCE-----EE-eCCCC
Confidence 7999999999999999777663 56554 44211 100000 110 111 11 11112
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
+..+. +.|+||-+.|.-.+.+......+.|+. |++
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 22221 468999998887776666667778875 454
No 294
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=49.35 E-value=71 Score=33.69 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHH-HHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~-~lr~l~~~~~~~~evvaInd~ 103 (442)
.||.|.|.|..|+. ++|.|..+. .+|. ++|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V~-~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKVS-GSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeEE-EECC
Confidence 37999999999999 799988875 5654 5664
No 295
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.23 E-value=57 Score=33.94 Aligned_cols=88 Identities=25% Similarity=0.304 Sum_probs=50.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
.+|.|.|-|++|+.+++.|.++. .+|.++ |....+.+...++. ....+ +.++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~~-------------l~~~~-------~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALEE-------------LGELG-------IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHHH-------------HHhcC-------CEEEeCCc
Confidence 47999999999999999999875 566544 43221111111100 00001 11222122
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGA 183 (442)
+.++ ..+.|+||-++|...+.+......+.|.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2111 1268999999998777766666666665
No 296
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=49.16 E-value=1.1e+02 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=22.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
-+|.|+|-|.+|+.+++.+.... .+ ++++.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~g---~~~v~~~~ 197 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKASG---ARKVIVSD 197 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37899999999999988766653 55 55553
No 297
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=48.93 E-value=61 Score=31.92 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=50.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p 149 (442)
+|.|.|.|.+|+.+++++.... .+++++... .+....+.+ +|. + -.++.+...+.. ..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~----------~-~~i~~~~~~~~~--~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARK----LGA----------H-HYIDTSKEDVAE--AL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHH----cCC----------c-EEecCCCccHHH--HH
Confidence 7899999999999988887764 577777543 222222221 221 0 112211100000 00
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 150 ~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
..| .++|+++|++|.-...+.+..++..+..-|.+
T Consensus 224 --~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 224 --QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred --Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEE
Confidence 112 26899999987544555566677666643434
No 298
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=48.70 E-value=24 Score=32.93 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=27.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
++|.|.| +|.||+.+++.|..+. -+|++++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEeC
Confidence 3789999 9999999999999884 688877753
No 299
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=48.48 E-value=32 Score=37.00 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=25.0
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
...|.|.| +|++||++.+.|.++. +.+-+.
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg---f~vra~ 109 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG---FSVRAL 109 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC---Ceeeee
Confidence 46899999 9999999999999985 565444
No 300
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=48.46 E-value=19 Score=40.75 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=23.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-||+|+|.|.+|+.++..+..+. .++|+-+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d 340 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKA--GLPVRIKD 340 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHc--CCeEEEEe
Confidence 47999999999999998776232 26765543
No 301
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=48.14 E-value=22 Score=36.97 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|||.+.|.|.|||-++..++.+. ..+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEE
Confidence 48999999999998876666553 37887776
No 302
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=48.00 E-value=74 Score=32.05 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
-+|.|.|.|.||..+++.+.... . .|+++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999888776653 5 566654
No 303
>PRK06988 putative formyltransferase; Provisional
Probab=47.74 E-value=24 Score=35.96 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=26.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|++||.+.|++.+|...|+.|.++. ++|++|-
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~Vv 32 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALVV 32 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEEE
Confidence 4579999999999999999998763 6776663
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=47.64 E-value=1.3e+02 Score=29.00 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=50.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p 149 (442)
+|.|+|.|.+|+..++.+.... ..|+++... .+....+-+ +|. +.+ ++.+... ..+. -
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s--~~~~~~~~~----~g~----------~~~-~~~~~~~-~~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIK--EEKLELAKE----LGA----------DEV-LNSLDDS-PKDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CEEEEEcCC--HHHHHHHHH----hCC----------CEE-EcCCCcC-HHHH-H
Confidence 7888999999999988777664 667666542 333222221 121 000 1000000 0000 0
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 150 ~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
...+ ..++|+|+||.|.-...+.+..+++.|.+-+.+
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0011 237899999998544445566788777753333
No 305
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=47.55 E-value=26 Score=36.49 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-||.|.|+|++|+..++.+.... .+|++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999998764 57666653
No 306
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.37 E-value=82 Score=32.96 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
.+|.|.|.|.+|+..+|.|..+. .+|++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~ 34 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAY 34 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 37999999999999999998874 576544
No 307
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=47.16 E-value=83 Score=30.37 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| .|.+|+..++.+.... .+++++..
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~ 176 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAG 176 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3789999 8999999988877653 67776654
No 308
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.85 E-value=29 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||+|.|.|.+|..++..+.... .+|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 38999999999999999887653 5655554
No 309
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=46.84 E-value=37 Score=32.66 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=25.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-+|.|+| .|.||+.+++++.... .+++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 4799998 6999999988877764 677777664
No 310
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.83 E-value=28 Score=35.88 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=23.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||||+|.|.+|+.++..+.... ++|+..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG---~~V~l~D 37 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG---LDVVAWD 37 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999998887653 7876544
No 311
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.74 E-value=1e+02 Score=32.98 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|.|+|..|+.+++.+..+. .+|.+ .|
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G---~~V~~-~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG---CDVVV-AD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEE-EC
Confidence 7999999999999999998764 45544 44
No 312
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.42 E-value=25 Score=36.57 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=24.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|.|+|.+|+.+++.+..+. .+|.+..+
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~ 34 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKG---VYVIGVDK 34 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCC---CEEEEEeC
Confidence 7999999999999999998774 56665543
No 313
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=46.15 E-value=87 Score=30.41 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-+|.|.|-|.+|+.+++.+.... .+|+++...
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~~ 195 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITRS 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 37899999889999888777653 677766643
No 314
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=45.79 E-value=18 Score=40.94 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=21.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVA 99 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evva 99 (442)
-||+|+|.|.+|+.++..+..+. .++|+-
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l 333 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKA--GIPVRI 333 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHc--CCeEEE
Confidence 37999999999999997665321 166543
No 315
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.21 E-value=53 Score=35.02 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-||+|.|+|+-|+..+|.|..+. .+++ +.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v~-~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQA-LTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEEE-EEcC
Confidence 38999999999999999999875 5543 4653
No 316
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=45.03 E-value=25 Score=38.11 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|||+|.|+.|..+++.|.++. ++|.+.|-
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 48999999999999999998774 67766664
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=44.82 E-value=1.3e+02 Score=27.62 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+|.|.+|+.+++.+.... .+|+++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC
Confidence 37999997779999988877653 57766643
No 318
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.64 E-value=84 Score=32.66 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=23.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|.|.|++|+..++.|..+. .+|++ .|
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G---~~V~~-~d 35 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG---ANVTV-ND 35 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CEEEE-Ec
Confidence 6899999999999999998774 56544 45
No 319
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=44.06 E-value=39 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.6
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+||-|.| .|.||+.+++.|..+. .+|+++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 35899999 9999999999998864 68887654
No 320
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=44.05 E-value=34 Score=32.48 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||.|.| .|.||+.+++.|..+. .+|+++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG---FAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC---CEEEEEec
Confidence 4899999 8999999999998764 67776653
No 321
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=43.31 E-value=35 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|||.|.| .|-||+.+++.|.++. .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEec
Confidence 4799999 8999999999998764 68887753
No 322
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=43.10 E-value=34 Score=34.98 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=26.6
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
++||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEE
Confidence 46899999 8999999999998864 6888775
No 323
>PLN02572 UDP-sulfoquinovose synthase
Probab=42.65 E-value=49 Score=35.02 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=25.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.||-|-| .|.||+.+++.|.++. .+|+++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 5799999 9999999999999874 6887765
No 324
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=42.47 E-value=32 Score=34.04 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=22.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
-+|.|.|-|.+|...++.+.... .+ |+++.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G---~~~v~~~~ 192 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALG---AKSVTAID 192 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 37999999999999988777653 55 44553
No 325
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=42.36 E-value=1.5e+02 Score=28.93 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=22.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
-+|.|+|.|.+|+.+++.+.... . .++++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G---~~~v~~~~ 197 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAG---AAEIVATD 197 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37899999999999988776653 4 555553
No 326
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=42.33 E-value=44 Score=29.10 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|+|.|.|.+|+.+++.+.... .-+|..++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG--AAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CCEEEEEc
Confidence 48999999999999999998753 13444444
No 327
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=41.89 E-value=26 Score=33.26 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..||.|.|.|-+|..+++.|....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G 42 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG 42 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987653
No 328
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=41.88 E-value=37 Score=37.49 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.0
Q ss_pred cCceeEEEEc-CChhHHHHHHHHHhCCCCCcEE-EEEecCCChhh
Q 013492 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEV-VAINDTGGVKQ 108 (442)
Q Consensus 66 ~~~ikVaInG-fGrIGr~~lr~l~~~~~~~~ev-vaInd~~~~~~ 108 (442)
++++||-|-| .|.||+.+.+.|..+. .++ ++..|+.+.+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~~~~~l~d~~~ 419 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEYGKGRLEDRSS 419 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC---CeEEeeccccccHHH
Confidence 3457999999 9999999999988763 566 44445444443
No 329
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=41.67 E-value=28 Score=37.68 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=25.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|||+|+|++|+.+++.|.... ++|.+.|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4899999999999999998764 68777765
No 330
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=41.50 E-value=36 Score=36.13 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=27.4
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+||.|-| .|-||+.+++.|.++. .+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 36899999 9999999999999874 68888853
No 331
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=41.41 E-value=40 Score=33.54 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=26.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||.|-| .|.||+.+++.|.++. ..+|++++-
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeC
Confidence 4899999 8999999999998652 268888863
No 332
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=41.18 E-value=50 Score=26.50 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=38.6
Q ss_pred EEEEEEEccCCCHHHHHHHHHhcccc--cCCCceeeccCC--eeeeccCCCCcc
Q 013492 349 VDLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP--LVSVDFRCSDVS 398 (442)
Q Consensus 349 vdl~v~l~k~~~~eeV~~a~~~aa~~--~lkgil~~~~~~--~VS~Df~~~~~S 398 (442)
..++++...+.+.+++.+.+++-+.+ .+||++...+++ .+..++.++.++
T Consensus 2 ~s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 2 SSFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 35677888999999999999887644 579999998775 466677776544
No 333
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=40.78 E-value=1.8e+02 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|+|-|.+|..-++.|.+.. -.|+.|..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~g---a~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAG---AQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 8999999999999999888764 34444543
No 334
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=40.67 E-value=16 Score=41.45 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=59.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe-cCCChhhhhh--hcccCcc--cccCCcceee----ecCCcEEECC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN-DTGGVKQASH--LLKYDST--LGIFEADVKP----VGTDGISVDG 138 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn-d~~~~~~la~--LlkyDSt--~g~f~~~v~~----~~~~~i~v~G 138 (442)
..||.|.|.|-+|-.+++.|..-.-+.+. -|. |..+...+.. |+.++.. .|+.++.+-. .-.-.+.+.|
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~It--lVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~ 415 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHIT--FVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG 415 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEE--EEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence 46899999999999999999876422233 232 2222222222 2222221 1555443210 0122334434
Q ss_pred EEEEE------Eec-------CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 139 KVIQV------VSN-------RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 139 k~I~v------~~~-------~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
....| +.+ .+..++.=--.+.|+||+||..+-+| +....+-.-.+|.+|++
T Consensus 416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR-~L~n~~c~~~~kplI~a 479 (664)
T TIGR01381 416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR-WLPTVLCSRHKKIAISA 479 (664)
T ss_pred eeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH-HHHHHHHHHhCCCEEEE
Confidence 33222 111 11112210013679999999988776 33333333345577776
No 335
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=40.61 E-value=1.7e+02 Score=28.53 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=22.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
=+|.|+|.|.+|..+++.+.... .+++.+.+
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~G---~~~v~~~~ 193 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKARG---VGPIVASD 193 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37899999999999888776653 45444444
No 336
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=40.40 E-value=33 Score=36.48 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=25.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||||.|.|.+|.-++.++.. + ++|++++-
T Consensus 7 mkI~vIGlGyvGlpmA~~la~---~-~~V~g~D~ 36 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK---S-RQVVGFDV 36 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc---C-CEEEEEeC
Confidence 589999999999999988654 2 79888874
No 337
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=40.17 E-value=39 Score=34.44 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=62.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec--CCC-hhhhhhhcccCcccccCCcceeeecCCcEEECCE-EEEE-
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND--TGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK-VIQV- 143 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd--~~~-~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk-~I~v- 143 (442)
-+|.|.|-|-+|--.+.+|....-+.+-++=-.| ..+ -+|+-.++ +++|+-+-++- .+.-..||=. .+..
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~---~~iGk~Kv~vm--~eri~~InP~c~V~~~ 105 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL---GDIGKPKVEVM--KERIKQINPECEVTAI 105 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh---hhcccHHHHHH--HHHHHhhCCCceEeeh
Confidence 4799999999999999999876544455533333 112 34443333 34566543321 1111112210 0111
Q ss_pred ---EecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCC-CCCce
Q 013492 144 ---VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTY 199 (442)
Q Consensus 144 ---~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~-d~pt~ 199 (442)
+.+.+-.++- ..+.||||||.-....+-..-.+...-..+||-+..+.+ -+||-
T Consensus 106 ~~f~t~en~~~~~--~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTr 163 (263)
T COG1179 106 NDFITEENLEDLL--SKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTR 163 (263)
T ss_pred HhhhCHhHHHHHh--cCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCce
Confidence 1122222222 237899999998777664443433333334544443322 34643
No 338
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=40.17 E-value=75 Score=32.00 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=48.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
-+|.|+|-|.+|..++..+.... . .++++... .+....+-+ +|. + ..++.+...+. +
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G---~~~v~~~~~~--~~k~~~~~~----~g~----------~-~~i~~~~~~~~--~ 245 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG---CTTIIAVDIV--DSRLELAKE----LGA----------T-HVINPKEEDLV--A 245 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEeCC--HHHHHHHHH----cCC----------c-EEecCCCcCHH--H
Confidence 37999999999999888777653 4 35555432 222211111 221 0 01111000000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeE
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkV 186 (442)
...++. ..++|+|+||+|.-...+.+..++..+.+-+
T Consensus 246 ~v~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 246 AIREIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLA 282 (365)
T ss_pred HHHHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEE
Confidence 000111 2479999999986444456677777776433
No 339
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=40.10 E-value=1.6e+02 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd 102 (442)
+|.|+|.|.+|+.+++.+.... .. ++++..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG---ASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CCeEEEEeC
Confidence 6899999999999988887653 55 655543
No 340
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=39.97 E-value=18 Score=37.81 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=56.0
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCcceee----ecCCcEEECCEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKVI 141 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~----~~~~~i~v~Gk~I 141 (442)
..||.|.|.|-+|..++..|....-+ ++.-+.+ ..++..+..-+-|+ +..|+.+...-. .-+..+.|....-
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 45899999999999999998865422 3333443 22444433322222 223544332210 0012222211111
Q ss_pred EEEecCCCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCC
Q 013492 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAK 184 (442)
Q Consensus 142 ~v~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~-~hl~aGAk 184 (442)
.+ ++.++..--.++|+||+|+..+.++.... ...+.|..
T Consensus 119 ~i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 119 RL----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred ec----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 11 22222111237899999999988775433 23445553
No 341
>PRK05442 malate dehydrogenase; Provisional
Probab=39.87 E-value=47 Score=34.21 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.5
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHh
Q 013492 68 KLKVAINGF-GRIGRNFLRCWHG 89 (442)
Q Consensus 68 ~ikVaInGf-GrIGr~~lr~l~~ 89 (442)
+.||+|.|. |.||..++-.+..
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHh
Confidence 469999996 9999999876654
No 342
>PRK08223 hypothetical protein; Validated
Probab=39.65 E-value=26 Score=35.86 Aligned_cols=98 Identities=19% Similarity=0.141 Sum_probs=49.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccC-cccccCCcceeeecCCcEEECC-EEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVDG-KVIQVV 144 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyD-St~g~f~~~v~~~~~~~i~v~G-k~I~v~ 144 (442)
.-||.|.|.|-+|-.++..|..-.-+.+. -|.+ ..+...+-.-+-|+ +..|+.+.++- ...-..+|- -.|..+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~--lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a--~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFT--IADFDVFELRNFNRQAGAMMSTLGRPKAEVL--AEMVRDINPELEIRAF 102 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEE--EEeCCCcchhccccccCcChhHCCCcHHHHH--HHHHHHHCCCCEEEEE
Confidence 35899999999999999988765322233 2332 33444443323222 23466544321 111111221 122333
Q ss_pred ecC-CCCCCCCCCccccEEEcCCCCC
Q 013492 145 SNR-NPVNLPWGDLGIDLVIEGTGVF 169 (442)
Q Consensus 145 ~~~-~p~~l~W~~~gvDiVie~TG~f 169 (442)
.++ +++++..--.+.|+||||+..|
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCC
Confidence 211 2333221123789999999876
No 343
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=39.46 E-value=29 Score=35.55 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=31.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD 116 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyD 116 (442)
+++|.+|.||.|.++.+.+.++. -++|+-.- +++....+.+|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD~--n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYDV--NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEcC--CHHHHHHHHhcC
Confidence 47899999999999999988775 68776542 345555555543
No 344
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=39.41 E-value=52 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGR 90 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~ 90 (442)
.|++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999988775
No 345
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.34 E-value=63 Score=25.55 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||.|+|-|.||-.++..+.... .+|.-|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g---~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG---KEVTLIE 29 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---SEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC---cEEEEEe
Confidence 6899999999999999998874 4544443
No 346
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=39.19 E-value=46 Score=33.38 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=23.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||+|.|.|.+|+.++..+..+.- .-+|+-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 89999999999999998887641 12555554
No 347
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.13 E-value=36 Score=33.66 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=22.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
-+|.|+|.|.||..++..+.... .+ ++++.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G---~~~v~~~~ 198 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG---AGRIIAVG 198 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 37999999999999988776553 43 55443
No 348
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.97 E-value=1.6e+02 Score=22.77 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=41.0
Q ss_pred eecCCCchhHHHHHhccccCCceeEEEEeeCcCcceeEEEEEEEccCCCHHHHHHHHHh
Q 013492 312 IVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 370 (442)
Q Consensus 312 IIPtstGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~~~~eeV~~a~~~ 370 (442)
.||-..|+-+.+..+|-+ ...|+-...|-...+...+.+.+++..+-..+++.+.|++
T Consensus 4 ~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 4 TFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred ECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 367777876666667766 6678887887766666667788888766666777777665
No 349
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.95 E-value=45 Score=33.69 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
|||+|+|.|.+|..++..+..+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999887763
No 350
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.71 E-value=3.2e+02 Score=25.98 Aligned_cols=87 Identities=24% Similarity=0.300 Sum_probs=49.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
-.|.|.| .|.+|+.++..+.... ..+.++... .+....+.+ +|. + ...+..+
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~-------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVGS--PARAEGLRE----LGA---A-------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC---c-------EEEeccc--------
Confidence 4789999 5999999988777653 566666432 232222221 221 0 0101100
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
+ +...++|+++||+|.- ..+.+-.++..+.+-|.+
T Consensus 187 ---~--~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 187 ---E--LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred ---c--ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 0 1123799999999964 445566788777654444
No 351
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=38.36 E-value=67 Score=32.50 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
-+|.|.|.|.||...+.++.... . +|+++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK---ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 37999999999999888776653 4 566664
No 352
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=38.30 E-value=1.5e+02 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
-+|.|+|-|.||...+..+.... . .|+++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG---ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999888776653 4 566654
No 353
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=38.26 E-value=16 Score=38.42 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=32.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD 116 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyD 116 (442)
-||.|.|.|.+|-+-+|.+..-. .++.|..+|.. .++++-+++.++
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~-rl~~ldd~f~~r 214 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNID-RLRQLDDLFGGR 214 (371)
T ss_pred ccEEEECCccccchHHHHHhccC-CeeEEEecCHH-HHhhhhHhhCce
Confidence 48999999999999999988764 45776666631 345554555433
No 354
>PRK14851 hypothetical protein; Provisional
Probab=38.26 E-value=16 Score=41.47 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=51.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe-cCCChhhhhhhccc-CcccccCCcceeeecCCcEEEC-CEEEEEE
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN-DTGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVV 144 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn-d~~~~~~la~Llky-DSt~g~f~~~v~~~~~~~i~v~-Gk~I~v~ 144 (442)
..||+|.|.|-+|-.++..|....-+.+.| |. |..++..+-.-+-| .+..|+.+.++- ...-..+| +-.|..+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~L--vD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~--~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHI--ADFDQFEPVNVNRQFGARVPSFGRPKLAVM--KEQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEE--EcCCEecccccccCcCcChhhCCCHHHHHH--HHHHHHhCCCCeEEEE
Confidence 358999999999999999887654333333 32 22233333332222 233466544331 11111233 2234444
Q ss_pred ecC-CCCCCCCCCccccEEEcCCCCCC
Q 013492 145 SNR-NPVNLPWGDLGIDLVIEGTGVFV 170 (442)
Q Consensus 145 ~~~-~p~~l~W~~~gvDiVie~TG~f~ 170 (442)
.+. ++.++..--.++|+||||+..|.
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCc
Confidence 322 33343211238999999998653
No 355
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.19 E-value=1.4e+02 Score=21.86 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=36.3
Q ss_pred ecCCCchhHHHHHhccccCCceeEEEEeeCc----CcceeEEEEEEEccCCCHHHHHHHHHh
Q 013492 313 VPTSTGAAKAVALVLPALKGKLNGIALRVPT----PNVSVVDLVVQVSKKTFAEEVNAAFRE 370 (442)
Q Consensus 313 IPtstGaakav~kVlPeL~gkl~g~avRVPt----~~vs~vdl~v~l~k~~~~eeV~~a~~~ 370 (442)
+|...|.-..+..++-+.+..+..+..+-+- .....+.+++++......+++.+.+++
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4555677777888888888888877766442 344556667766432334455555554
No 356
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=38.17 E-value=35 Score=37.36 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=79.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcc-cCccccc----CCcceee-ec---CCcEEECCE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGI----FEADVKP-VG---TDGISVDGK 139 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~Llk-yDSt~g~----f~~~v~~-~~---~~~i~v~Gk 139 (442)
.+||++|+|..|+.+++-|..+. ++|..-|-. ++....+.+ ... .|. ...+++. .+ .-.++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt--~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~~l~~~dvI---- 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT--TSKVDETVERAKK-EGNLPLYGFKDPEDFVLSIQKPRSV---- 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC--HHHHHHHHHhhhh-cCCcccccCCCHHHHHhcCCCCCEE----
Confidence 48999999999999999998764 787766643 222222221 000 010 0011110 11 11111
Q ss_pred EEEEEecCCCC------CCCCCCccccEEEcCCCCC--CCHhhHHHHHHcCCCeEEEeCCCC------CCCCceeeccCc
Q 013492 140 VIQVVSNRNPV------NLPWGDLGIDLVIEGTGVF--VDREGAGKHIQAGAKKVLITAPGK------GDIPTYVVGVNA 205 (442)
Q Consensus 140 ~I~v~~~~~p~------~l~W~~~gvDiVie~TG~f--~~~e~a~~hl~aGAkkVIIsapsk------~d~pt~V~gVN~ 205 (442)
|..+...++. -++--+ .=|++||++-.. .+++.+....+.|+ -.+.+|-. ..-|++++|=+.
T Consensus 77 -i~~v~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 77 -IILVKAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred -EEECCCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 2222211110 012111 238999997654 34444555666787 36788742 123688999898
Q ss_pred cCCCCCCCeEecC-------Cch----hhhhHHHHHHHHHh
Q 013492 206 DAYKPDEPIISNA-------SCT----TNCLAPFVKVLDQK 235 (442)
Q Consensus 206 ~~y~~~~~IISna-------SCT----Tn~Lap~lkvL~~~ 235 (442)
+.|+.-.++...- .|. ...-+-.+|.+|+-
T Consensus 153 ~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~ 193 (493)
T PLN02350 153 EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNG 193 (493)
T ss_pred HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHH
Confidence 8876433322111 232 34556677777753
No 357
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=37.97 E-value=77 Score=35.02 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
-||.|.|+|++|+..++.+....
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG 187 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG 187 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC
Confidence 59999999999999999888764
No 358
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.90 E-value=47 Score=35.11 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=55.3
Q ss_pred ccccccCceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChh-hhhhhcccCcccccCCcceeeecCCcEEECCE
Q 013492 61 RKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVK-QASHLLKYDSTLGIFEADVKPVGTDGISVDGK 139 (442)
Q Consensus 61 ~~~~~~~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~-~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk 139 (442)
.++...+--||.|.|.|.||-..+.++-...- -+|| |.|....+ .++.-|..+-+. . ...+. +.
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA--~~VV-i~d~~~~Rle~Ak~~Ga~~~~-------~-~~~~~-~~--- 227 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA--SDVV-ITDLVANRLELAKKFGATVTD-------P-SSHKS-SP--- 227 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCC--CcEE-EeecCHHHHHHHHHhCCeEEe-------e-ccccc-cH---
Confidence 33444455699999999999877776655432 2433 44543222 122223222110 0 00000 00
Q ss_pred EEEEEecCCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 140 VIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 140 ~I~v~~~~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
+.+. .-.+=--++...|++|||||.-.+.+.|-..++.|-. +++-+
T Consensus 228 --~~~~--~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg 273 (354)
T KOG0024|consen 228 --QELA--ELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVG 273 (354)
T ss_pred --HHHH--HHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCE-EEEec
Confidence 0000 0000001223489999999999988877766665543 44433
No 359
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=37.67 E-value=85 Score=30.62 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=25.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
+|.|+| .|.+|+.+++.+.... .+++++.+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~ 180 (341)
T cd08290 149 WVIQNGANSAVGQAVIQLAKLLG---IKTINVVRD 180 (341)
T ss_pred EEEEccchhHHHHHHHHHHHHcC---CeEEEEEcC
Confidence 789998 6999999988887764 678777764
No 360
>PLN02206 UDP-glucuronate decarboxylase
Probab=37.61 E-value=42 Score=35.71 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.2
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+||-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~ 151 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDN 151 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeC
Confidence 36899999 9999999999999874 58887753
No 361
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=37.54 E-value=55 Score=33.38 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
.||+|.|.|.||..++-.+..++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~ 29 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQG 29 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 59999999999999998887664
No 362
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=37.49 E-value=37 Score=29.62 Aligned_cols=102 Identities=14% Similarity=0.222 Sum_probs=50.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec-CCChhhhhhhcccCc-ccccCCcceeeecCCcEE-EC-CEEEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDS-TLGIFEADVKPVGTDGIS-VD-GKVIQVV 144 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd-~~~~~~la~LlkyDS-t~g~f~~~v~~~~~~~i~-v~-Gk~I~v~ 144 (442)
.||.|.|.|.+|-.+++.|....-+ ++.-+.+ ..+++.+..-+-|.+ ..|..+.+.- .+.|. ++ +-.++.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~---~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAA---KERLQEINPDVEVEAI 77 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHH---HHHHHHHSTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeecccccccccccccchhHHHHHH---HHHHHHhcCceeeeee
Confidence 5899999999999999998765322 3333443 335555544332332 2355443221 01111 11 2223333
Q ss_pred ecC-CCCCCCCCC-ccccEEEcCCCCCCCHhhHH
Q 013492 145 SNR-NPVNLPWGD-LGIDLVIEGTGVFVDREGAG 176 (442)
Q Consensus 145 ~~~-~p~~l~W~~-~gvDiVie~TG~f~~~e~a~ 176 (442)
... ++.++ +.. .+.|+||+|+..+..+....
T Consensus 78 ~~~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~ 110 (135)
T PF00899_consen 78 PEKIDEENI-EELLKDYDIVIDCVDSLAARLLLN 110 (135)
T ss_dssp ESHCSHHHH-HHHHHTSSEEEEESSSHHHHHHHH
T ss_pred ecccccccc-cccccCCCEEEEecCCHHHHHHHH
Confidence 211 11111 111 27899999998765554443
No 363
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.41 E-value=56 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=22.5
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 71 VaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|+|.|.|.||..++-.|.... .+|..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g---~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG---HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC---CceEEEEc
Confidence 789999999999998887753 46655553
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=37.40 E-value=1.4e+02 Score=29.49 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=23.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|+| .|.+|+.+++.+..+. .+++++..
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG---CYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 799999 5999999988777663 67766553
No 365
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=37.39 E-value=11 Score=31.75 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=27.0
Q ss_pred ccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCC
Q 013492 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (442)
Q Consensus 157 ~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsaps 192 (442)
.++|+||||+|.-...+.+-..++.|.+-|++..++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 489999999996656666777777777666666554
No 366
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=37.35 E-value=45 Score=31.78 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||.|.| .|.||+.+++.|..+. .+|+++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeC
Confidence 588999 8999999999998764 5777664
No 367
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=37.22 E-value=1.7e+02 Score=30.29 Aligned_cols=34 Identities=18% Similarity=-0.016 Sum_probs=23.4
Q ss_pred ccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeC
Q 013492 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (442)
Q Consensus 157 ~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsa 190 (442)
.++|+|||++|.-...+.+-.++..+.+.+++.+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4799999999865555666677765655555544
No 368
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=37.20 E-value=54 Score=32.29 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-EEEEE
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~-evvaI 100 (442)
+|.|+|.|.+|+..++.+.... . .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG---ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 7899999999999988777653 4 46666
No 369
>PRK07411 hypothetical protein; Validated
Probab=36.95 E-value=25 Score=36.90 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..||.|+|.|-+|-.++..|..-.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G 61 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG 61 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999887653
No 370
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=36.90 E-value=3.2e+02 Score=26.66 Aligned_cols=138 Identities=18% Similarity=0.226 Sum_probs=68.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p 149 (442)
.|.|+|.|.+|+.+++.+.... ..|+++....+.+....+.+ +|. . . + +.+.-.+. +..
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~----~g~-~---~------~--~~~~~~~~--~~l 225 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKE----LGA-D---A------V--NGGEEDLA--ELV 225 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHH----hCC-c---c------c--CCCcCCHH--HHH
Confidence 6888999999999988887664 67766532112222222221 221 0 0 0 00000000 000
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCcc-CCCCCCCeEecCCchhhhhHHH
Q 013492 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKPDEPIISNASCTTNCLAPF 228 (442)
Q Consensus 150 ~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~-~y~~~~~IISnaSCTTn~Lap~ 228 (442)
..+ ....++|++|||.|.-...+.+..+++.+.+-+.+...+ + .+ +.+|.. .+.....|..+-.++...+.-+
T Consensus 226 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~---~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 299 (306)
T cd08258 226 NEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P-LA---ASIDVERIIQKELSVIGSRSSTPASWETA 299 (306)
T ss_pred HHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C-CC---cccCHHHHhhcCcEEEEEecCchHhHHHH
Confidence 000 122378999999874333344556777666544454433 1 11 112211 1223345666666777777777
Q ss_pred HHHHHH
Q 013492 229 VKVLDQ 234 (442)
Q Consensus 229 lkvL~~ 234 (442)
++.+++
T Consensus 300 ~~~~~~ 305 (306)
T cd08258 300 LRLLAS 305 (306)
T ss_pred HHHHhc
Confidence 776654
No 371
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.73 E-value=2.1e+02 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
.||.|.|.|..|+..++.|..+. +..+|. +.|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeC
Confidence 37999999999999999998763 225654 4653
No 372
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=36.64 E-value=1.3e+02 Score=29.10 Aligned_cols=93 Identities=18% Similarity=0.128 Sum_probs=50.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInGf-GrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+|.|+|- |.+|..+++.+.... .+++++... .+....+.+ +|. + -.++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~-~----------~v~~~~~~~---~~~ 205 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG---YEVVASTGK--ADAADYLKK----LGA-K----------EVIPREELQ---EES 205 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC---CeEEEEecC--HHHHHHHHH----cCC-C----------EEEcchhHH---HHH
Confidence 7899995 999999988887764 677777543 222222221 121 0 011111000 000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEE
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVII 188 (442)
-.. +...++|+|+||+|. ...+.+-.++..+..-+.+
T Consensus 206 ~~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 206 IKP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred HHh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 000 122468999999997 3445566777666643433
No 373
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.62 E-value=80 Score=31.01 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|+|.|.+|+.++..+.... ++++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG---ARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 7999999999999988777653 67777754
No 374
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=36.54 E-value=47 Score=31.52 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..||.|.|.|-+|..+++.|....
T Consensus 21 ~s~VlIiG~gglG~evak~La~~G 44 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSG 44 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 375
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=36.47 E-value=1.4e+02 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=23.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| .|.+|+.+++.+.... .+++++..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~~ 178 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIAG 178 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC---CEEEEEeC
Confidence 3789999 7999999988877653 57766653
No 376
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=36.47 E-value=58 Score=34.63 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGf-GrIGr~~lr~l~~~~ 91 (442)
++||+|.|. |+||-.++-.+..+.
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 589999997 999999998887653
No 377
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=36.42 E-value=48 Score=31.90 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|.| .|.||+.+++.|..+. .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 789999 8999999999998764 57777764
No 378
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=36.39 E-value=52 Score=33.04 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=26.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4899999 9999999999999874 68888853
No 379
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.12 E-value=1.2e+02 Score=30.83 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.8
Q ss_pred eeEEEEcCCh-hHHHHHHHHHhCC
Q 013492 69 LKVAINGFGR-IGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGr-IGr~~lr~l~~~~ 91 (442)
-+|.|.|.|. +||-++..|..+.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 3899999886 9999988887653
No 380
>PLN02240 UDP-glucose 4-epimerase
Probab=36.11 E-value=53 Score=32.37 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=26.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||.|.| +|.||+.+++.|..+. .+|+++..
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~ 37 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDN 37 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 9999999999998764 68888753
No 381
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=35.89 E-value=76 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=24.6
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 71 VaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
|-|.| +|-||+.+++.|..+. .+|+++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 57899 9999999999999875 567666654
No 382
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=35.73 E-value=1.6e+02 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=22.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|+| .|.+|..++..+.... .+|+++..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~ 179 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALTG 179 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 699999 5999999988776653 56655543
No 383
>PRK09291 short chain dehydrogenase; Provisional
Probab=35.61 E-value=61 Score=30.15 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|-|.| .|.||+.+++.+..+. .+|+++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3689999 9999999999998764 67776654
No 384
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=35.43 E-value=1.4e+02 Score=30.12 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=23.3
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|.|+|- |.||...+..+.... .+++++.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 37999995 999999888776653 5776664
No 385
>PLN02827 Alcohol dehydrogenase-like
Probab=35.41 E-value=1.7e+02 Score=30.00 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=22.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-EEEEE
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~-evvaI 100 (442)
-+|.|.|.|.||..++..+.... . .++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G---~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG---ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEE
Confidence 37899999999999988776653 4 35554
No 386
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=35.05 E-value=1.4e+02 Score=29.28 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|.|.|.+||.+++.+.... .+|...|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37999999999999999998763 46665654
No 387
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=35.05 E-value=82 Score=31.28 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEc-CChhHHHHHHHHHhCCCCCcEEE
Q 013492 73 ING-FGRIGRNFLRCWHGRKDSPLEVV 98 (442)
Q Consensus 73 InG-fGrIGr~~lr~l~~~~~~~~evv 98 (442)
|-| .|.+|+.+++.|.++.+ ..+|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~-~~~Vr 27 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY-IYEVR 27 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC-ceEEE
Confidence 456 99999999999998752 24444
No 388
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=34.82 E-value=56 Score=31.99 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd 102 (442)
-+|.|+|.|.+|+.+++.+.... .+ ++++..
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~ 192 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILG---AKRVIAVDI 192 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 37999999999999988776653 45 666654
No 389
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.81 E-value=81 Score=32.97 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||.|.|.|..|+..++.|..+. .+|. +.|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~-~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVV-VSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEE-EEC
Confidence 7999999999999999888764 5654 455
No 390
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.63 E-value=47 Score=32.57 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=21.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
.|.|+|-|.+|+.+++.+.... .+ ++++.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G---~~~v~~~~ 200 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG---AERIIAMS 200 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 6889999999999888776653 44 55554
No 391
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=34.41 E-value=61 Score=31.87 Aligned_cols=29 Identities=17% Similarity=0.451 Sum_probs=23.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||-|-| .|-||+.+.+.|.++. +|+++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEec
Confidence 3799999 8999999999988763 455554
No 392
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=34.19 E-value=42 Score=32.56 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=23.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|.| .|.+|+.+++.+.... .+++++..
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~G---~~v~~~~~ 173 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKALG---AKLIGTVG 173 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3789997 8999999888776654 67777654
No 393
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=34.18 E-value=54 Score=31.22 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=24.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||.|-| +|-||+.+++.|..+. ...+|++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 578999 9999999999987753 236887775
No 394
>PRK10083 putative oxidoreductase; Provisional
Probab=34.04 E-value=1.2e+02 Score=29.54 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.2
Q ss_pred eEEEEcCChhHHHHHHHHHh
Q 013492 70 KVAINGFGRIGRNFLRCWHG 89 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~ 89 (442)
+|.|+|-|.+|+.++..+..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~ 182 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKG 182 (339)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 79999999999998877653
No 395
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=34.01 E-value=30 Score=36.28 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.9
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
..||.|.|.|-+|-.++..|....
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G 65 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG 65 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999987654
No 396
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=33.99 E-value=54 Score=39.05 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=77.6
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCC---CCcEEEEEec-CCChhhhhhhcccCc-ccccCCcceee----ecCCcEEECC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKD---SPLEVVAIND-TGGVKQASHLLKYDS-TLGIFEADVKP----VGTDGISVDG 138 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~---~~~evvaInd-~~~~~~la~LlkyDS-t~g~f~~~v~~----~~~~~i~v~G 138 (442)
..||.|+|.|.+|..+++.|....- +.=.+.-+.+ ..+...+..-+-|.. .-|+.++.+-. .-+-.+.
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~--- 495 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIK--- 495 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCE---
Confidence 4689999999999999998875431 0013333332 334444333222222 23655443210 0112222
Q ss_pred EEEEEEecC-CCC--CC-C---CCCccccEEEcCCCCCCCHhhHH-HHHHcCCCeEEEeCCC---CCCCCceeeccCccC
Q 013492 139 KVIQVVSNR-NPV--NL-P---WGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPG---KGDIPTYVVGVNADA 207 (442)
Q Consensus 139 k~I~v~~~~-~p~--~l-~---W~~~gvDiVie~TG~f~~~e~a~-~hl~aGAkkVIIsaps---k~d~pt~V~gVN~~~ 207 (442)
|....++ ++. ++ + |. +.|+||+|+..+-++.... .....+. -+|.+.. ++.+-++++++- +.
T Consensus 496 --I~~~~~~v~~~~e~i~~~~f~~--~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~t-e~ 568 (1008)
T TIGR01408 496 --IDAHQNRVGPETETIFNDEFYE--KLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHLT-ES 568 (1008)
T ss_pred --EEEEEeecChhhhhhhhHHHhh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCCc-CC
Confidence 2222211 111 11 1 43 7899999998876654433 2334444 4555544 345556777653 22
Q ss_pred CC--CCCCeEecCCch--------hhhhHHHHHHHHHhhc
Q 013492 208 YK--PDEPIISNASCT--------TNCLAPFVKVLDQKFG 237 (442)
Q Consensus 208 y~--~~~~IISnaSCT--------Tn~Lap~lkvL~~~fG 237 (442)
|. ++.+-.+.|.|| -.|+.=.-...+..|+
T Consensus 569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~ 608 (1008)
T TIGR01408 569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFS 608 (1008)
T ss_pred CCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHH
Confidence 32 111223456666 3565544444444444
No 397
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=33.96 E-value=55 Score=31.93 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=23.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|.|-|.+|+.+++.+.... ...|+++..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g--~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALT--PATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC--CCcEEEEeC
Confidence 36999998889999988877653 256776654
No 398
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=33.83 E-value=93 Score=33.17 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=47.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEE-EEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVI-QVVSNR 147 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I-~v~~~~ 147 (442)
-.|+|.|.|-||-..+..+..-. .=.|+||.-. ++-+.. ...+|- + =.||.+.. .+.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD~~--~~Kl~~----A~~fGA---T--------~~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVDIN--PEKLEL----AKKFGA---T--------HFVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcC--CceEEEEeCC--HHHHHH----HHhcCC---c--------eeecchhhhhHHH--
Confidence 36999999999988876665432 2467777532 221111 122221 1 11333222 1111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHc
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA 181 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~a 181 (442)
.-.++ | +.|+|++|||+|..-..+.|-.....
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~ 277 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEATHR 277 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhc
Confidence 00111 1 23999999999987666555443333
No 399
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=33.71 E-value=3.2e+02 Score=30.04 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=69.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecC--CcEEECCEEEEEE
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGT--DGISVDGKVIQVV 144 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~--~~i~v~Gk~I~v~ 144 (442)
|+..||++|.|..|++++.-...+. +.|..-|-+.+ +. -.+++-....+.+..... .++ ..|.--.+.+-.+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G---~~VavyNRt~~-kt-d~f~~~~~~~k~i~~~~s-ieefV~~Le~PRkI~lMV 75 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHG---YTVAVYNRTTE-KT-DEFLAERAKGKNIVPAYS-IEEFVASLEKPRKILLMV 75 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcC---ceEEEEeCCHH-HH-HHHHHhCccCCCccccCc-HHHHHHHhcCCceEEEEE
Confidence 4567999999999999988877764 88888887532 11 123322121222221111 000 1111111222222
Q ss_pred ecCCCCC------CCCCCccccEEEcCCC-CCCCHhhHHHHHH-cCCCeEE---EeCCCCC--CCCceeeccCccCCC
Q 013492 145 SNRNPVN------LPWGDLGIDLVIEGTG-VFVDREGAGKHIQ-AGAKKVL---ITAPGKG--DIPTYVVGVNADAYK 209 (442)
Q Consensus 145 ~~~~p~~------l~W~~~gvDiVie~TG-~f~~~e~a~~hl~-aGAkkVI---Isapsk~--d~pt~V~gVN~~~y~ 209 (442)
+.-.|.+ +|.-+ .-||+||+-- .|.+.....+.|. .|.. .| ||+...+ .-|.++||=+.+.|.
T Consensus 76 kAG~~VD~~I~~L~p~Le-~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~-FvG~GVSGGEeGA~~GPSiMpGG~~eay~ 151 (473)
T COG0362 76 KAGTPVDAVIEQLLPLLE-KGDIIIDGGNSHYKDTIRRNKELSEKGIL-FVGMGVSGGEEGARHGPSIMPGGQKEAYE 151 (473)
T ss_pred ecCCcHHHHHHHHHhhcC-CCCEEEeCCCcCCchHHHHHHHHHhcCCe-EEeccccccccccccCCCcCCCCCHHHHH
Confidence 2223221 33333 3399999754 4555544434333 3432 22 2333333 239999999999985
No 400
>PRK08017 oxidoreductase; Provisional
Probab=32.97 E-value=73 Score=29.63 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=24.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|.| .|.||+.+++.|..+. .+|+++..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 689999 6999999999998764 57766643
No 401
>PRK07326 short chain dehydrogenase; Provisional
Probab=32.94 E-value=68 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|-|.| .|.||+.+++.+.++. .+|+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEee
Confidence 4789999 8999999999998763 5777765
No 402
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.90 E-value=67 Score=32.95 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.0
Q ss_pred ceeEEEEcC-ChhHHHHHHHHHhCCC----CCcEEEEEe
Q 013492 68 KLKVAINGF-GRIGRNFLRCWHGRKD----SPLEVVAIN 101 (442)
Q Consensus 68 ~ikVaInGf-GrIGr~~lr~l~~~~~----~~~evvaIn 101 (442)
++||+|.|. |.||..++..|..++- ...||+.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 479999996 9999999998876531 113666653
No 403
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=32.86 E-value=2e+02 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=22.9
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
+|.|.|.|.||...+.++.... ..++.+.|.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 7889999999999988777653 454445443
No 404
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=32.84 E-value=22 Score=38.63 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|+|+|.|.+|-..+..|.... .+|+.+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G---~~V~v~e 167 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMG---HAVTIFE 167 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 48999999999998888877653 5666554
No 405
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=32.71 E-value=1.5e+02 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=23.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| -|.||+..++.+.... .+++++..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3799999 7999999988776653 57776654
No 406
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=32.70 E-value=91 Score=30.56 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=23.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCc-EEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~-evvaInd 102 (442)
-+|.|+| .|.+|...++.+.... . +|+++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG---CSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 3799999 5999999888776653 5 6777754
No 407
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=32.60 E-value=1.1e+02 Score=29.76 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=22.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd 102 (442)
+|.|+|.|.+|+.+++.+.... .. ++++..
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~~ 192 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG---ASRVTVAEP 192 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEECC
Confidence 7899999999999988777653 45 554543
No 408
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=32.39 E-value=61 Score=30.92 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=22.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|+|.|||.-|+..+..|.+. .++|+.-..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS---GVNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhC---CCCEEEEec
Confidence 3899999999999998888765 378764443
No 409
>PRK06046 alanine dehydrogenase; Validated
Probab=32.36 E-value=65 Score=32.79 Aligned_cols=34 Identities=29% Similarity=0.228 Sum_probs=28.4
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
..+|||.|.|.+|+..++++.... +++.+.|-|.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVF--DLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC--CceEEEEECC
Confidence 358999999999999999887542 4888888875
No 410
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=32.12 E-value=66 Score=32.20 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~e-vvaInd 102 (442)
+|.|+|.|.+|+.+++.+.... .. |+++..
T Consensus 185 ~vLI~g~g~vG~a~i~lak~~G---~~~Vi~~~~ 215 (363)
T cd08279 185 TVAVIGCGGVGLNAIQGARIAG---ASRIIAVDP 215 (363)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC
Confidence 7899999999999988877653 54 666643
No 411
>PLN02702 L-idonate 5-dehydrogenase
Probab=31.94 E-value=87 Score=31.31 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
-+|.|+|-|.+|...+..+....
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G 205 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFG 205 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 37899999999999888777653
No 412
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=31.86 E-value=61 Score=35.38 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||||+|.|..|+.++..+.... ++|+..+-
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG---HQVLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 37999999999999999887653 78776653
No 413
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=31.78 E-value=1.4e+02 Score=30.55 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=55.1
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEec
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~ 146 (442)
+-||-|.| +|.+|+++++.+...+ .. ++..||-... |+. +.|. +.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~-~v~pVnp~~~---------~~~------------------v~G~--~~y-- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TN-IVGGVTPGKG---------GTT------------------VLGL--PVF-- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CC-EEEEECCCCC---------CCe------------------EeCe--ecc--
Confidence 46899999 9999999999998754 23 5557773200 111 1121 111
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCeEEEe
Q 013492 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (442)
Q Consensus 147 ~~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~aGAkkVIIs 189 (442)
++-.++|=.- ++|++|-+++...-.+-.+.-.+.|+|.+||-
T Consensus 55 ~sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~ 96 (291)
T PRK05678 55 NTVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVCI 96 (291)
T ss_pred CCHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEE
Confidence 1223333110 28999999997776677777788899986553
No 414
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=31.73 E-value=1.1e+02 Score=31.14 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=27.4
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|+.+|.|+|-|.-|-.+++.+..+ +++.+|.-|+.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~-~~~~~Itvi~~ 35 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ-DAHIPITLITA 35 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh-CcCCCEEEEeC
Confidence 445899999999999999988765 34577777764
No 415
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.41 E-value=69 Score=32.02 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
|||+|.|.|.+|..+...|....
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g 23 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK 23 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC
Confidence 37999999999999999887653
No 416
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=31.34 E-value=63 Score=35.21 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
||||+|.|.+|+.++..+.... ++|+..+-
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~ 38 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAG---HTVLLYDA 38 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 7999999999999999887653 78776553
No 417
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=31.07 E-value=71 Score=34.69 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|||+|.|.|.+|-.++-++.+.. ..++|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 58999999999999888887652 237888874
No 418
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=30.86 E-value=71 Score=32.38 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=70.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+||+|.|.|.+|..++-++..+.. .+|+.+.-..+... ...+ |--+ .... .. ..+ .|... .+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvDi~~~l~~-g~a~--d~~~----~~~~--~~----~~~-~i~~t--~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLDVVEGIPQ-GKAL--DMYE----ASPV--GG----FDT-KVTGT--NN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEeCCCChhH-HHHH--hhhh----hhhc--cC----CCc-EEEec--CC
Confidence 489999999999999998887642 26544443222222 1111 2111 0000 00 011 12221 22
Q ss_pred CCCCCCCCccccEEEcCCCCCC----CH-----hhH---HH----HHHc--CCCeEEEeCCCCCCCCceeeccCccCCCC
Q 013492 149 PVNLPWGDLGIDLVIEGTGVFV----DR-----EGA---GK----HIQA--GAKKVLITAPGKGDIPTYVVGVNADAYKP 210 (442)
Q Consensus 149 p~~l~W~~~gvDiVie~TG~f~----~~-----e~a---~~----hl~a--GAkkVIIsapsk~d~pt~V~gVN~~~y~~ 210 (442)
...+ .++|+||-|.|.-. +| .++ .. -.+. .++-+++|+|. |+-+++.- +...+ |
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~--di~t~~~~-~~sg~-~ 135 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL--DAMTYVAW-QKSGF-P 135 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH--HHHHHHHH-HHHCc-C
Confidence 2223 37899999998432 11 111 11 1112 23334556664 22222220 11112 3
Q ss_pred CCCeEecCCchhhhhHHHHHHHHHhhc
Q 013492 211 DEPIISNASCTTNCLAPFVKVLDQKFG 237 (442)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~fG 237 (442)
.+++| +.||..--+++-+.|-+++|
T Consensus 136 ~~rvi--G~g~~lds~R~~~~la~~l~ 160 (305)
T TIGR01763 136 KERVI--GQAGVLDSARFRTFIAMELG 160 (305)
T ss_pred HHHEE--EeccchHHHHHHHHHHHHhC
Confidence 45677 46667777788889999988
No 419
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.46 E-value=49 Score=35.82 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.1
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCC
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
|+.+|+|+|.|..|-..+|++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g 29 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG 29 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC
Confidence 4679999999999999999998763
No 420
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=30.42 E-value=66 Score=26.02 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=34.6
Q ss_pred EEEEEEEccCCCHHHHHHHHHhcccc--cCCCceeeccCC-eeeeccCCCCcc
Q 013492 349 VDLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP-LVSVDFRCSDVS 398 (442)
Q Consensus 349 vdl~v~l~k~~~~eeV~~a~~~aa~~--~lkgil~~~~~~-~VS~Df~~~~~S 398 (442)
..++++.+++.+.+.+.+.+.+.+.+ ..||++.+.++| ..-.+..++.++
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 35788999999999999999996554 479999998873 455555555444
No 421
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=30.11 E-value=84 Score=28.13 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
++.|.|.|.-|+.+++.+..+ .+++++.=|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEcC
Confidence 478999999999999998754 4899888763
No 422
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=30.10 E-value=1.2e+02 Score=32.41 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.9
Q ss_pred eeEEEEcC----ChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGf----GrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|+|+|. |.+|+.+++.+...... =+|..||-
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp 44 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNP 44 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECC
Confidence 37999995 88999999999875411 16777884
No 423
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.97 E-value=63 Score=33.99 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||.|.|+|+.|+.++|.|. +. .+|. +.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G---~~V~-~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF---GGVD-IFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC---CeEE-EEc
Confidence 47999999999999999998 64 4654 455
No 424
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.63 E-value=77 Score=31.33 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=25.3
Q ss_pred ceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 68 ~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+.+|.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEEE
Confidence 35899999 9999999999998874 5776553
No 425
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=29.53 E-value=84 Score=31.95 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCc-EEEEEe
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~-evvaIn 101 (442)
+|.|+|-|.+|..+++.+.... . .|+++.
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G---~~~vi~~~ 235 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAG---ASKVIAFE 235 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEc
Confidence 7899999999999988877764 4 565553
No 426
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=29.53 E-value=72 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=24.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| -|.+|..+++.+.... .+++++..
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g---~~v~~~~~ 175 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAG---ATVVGAAG 175 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 3699999 8999999988887764 67777654
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=29.13 E-value=71 Score=32.56 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
+||+|.|.|.||-.+.-.|....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 58999999999999988887654
No 428
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=28.78 E-value=40 Score=37.09 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=12.2
Q ss_pred eeEEEEcCChhHH
Q 013492 69 LKVAINGFGRIGR 81 (442)
Q Consensus 69 ikVaInGfGrIGr 81 (442)
.+|+|+|||.||+
T Consensus 37 KtIaIIGyGSqG~ 49 (487)
T PRK05225 37 KKIVIVGCGAQGL 49 (487)
T ss_pred CEEEEEccCHHHH
Confidence 4899999999999
No 429
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=28.44 E-value=91 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
++|.|.| .|.||+.+++.+.++. .+|+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 3688999 8999999999998764 5776654
No 430
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=28.44 E-value=2.5e+02 Score=27.45 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| .|.+|+.+++.+.... .+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG---AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 4789999 7999999988876654 57776664
No 431
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.39 E-value=71 Score=27.92 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=27.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-||-|.|-|.|+.+++|.+.+.. ++.|+||.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~G---i~tv~v~s 33 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELG---IETVAVNS 33 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhC---CcceeccC
Confidence 48999999999999999999885 89999996
No 432
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=28.14 E-value=2.9e+02 Score=30.01 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-||.|+|.|-+|+.+++.|.++.- -.|.-+|-+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGV--KKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence 479999999999999999998742 455556764
No 433
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=28.08 E-value=67 Score=30.35 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.8
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 71 VaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|-|-| .|.||+.+++.|.++. .+|++++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35778 9999999999998764 78888875
No 434
>PRK05086 malate dehydrogenase; Provisional
Probab=28.00 E-value=94 Score=31.67 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.0
Q ss_pred eeEEEEcC-ChhHHHHHHHHHh
Q 013492 69 LKVAINGF-GRIGRNFLRCWHG 89 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~ 89 (442)
+||+|.|. |+||+.++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 48999995 9999999987754
No 435
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=27.85 E-value=82 Score=30.10 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
||-|.| .|-||+.+++.|..+. .+|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 9999999999998764 5776664
No 436
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=27.82 E-value=53 Score=32.07 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEEEcC-ChhHHHHHHHHHhCC
Q 013492 71 VAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 71 VaInGf-GrIGr~~lr~l~~~~ 91 (442)
|+|.|. |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689998 999999998887653
No 437
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.80 E-value=1e+02 Score=28.12 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|.|.| .|.||+.+++.+.++. .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999998874 46666654
No 438
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=27.64 E-value=73 Score=34.28 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.1
Q ss_pred cCceeEEEEcCChhHHHHHHHHHhCC
Q 013492 66 QAKLKVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 66 ~~~ikVaInGfGrIGr~~lr~l~~~~ 91 (442)
....+|||.|||-.|+..+.-+....
T Consensus 50 k~tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 50 KATLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ccceEEEEEecCcHHHHHHHHHHhcC
Confidence 34589999999999999998887764
No 439
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=27.54 E-value=98 Score=28.41 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-||-|+|-|.+|.+.++.|.+.. -+|+.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 48999999999999999998764 4555564
No 440
>PRK12320 hypothetical protein; Provisional
Probab=27.33 E-value=80 Score=36.19 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 3899999 9999999999998864 68877764
No 441
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.08 E-value=97 Score=28.78 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+|-|.| .|.||+.+++.+..+. .+|+.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g---~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG---THVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC---CEEEEEe
Confidence 688999 8999999999998764 5776654
No 442
>PRK10537 voltage-gated potassium channel; Provisional
Probab=27.04 E-value=80 Score=33.51 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=24.8
Q ss_pred ceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 68 ~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+-.|-|.|+|++|+.+++.|.++. .+++.|.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 346999999999999999998764 5666665
No 443
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=27.00 E-value=1.9e+02 Score=29.07 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~ 91 (442)
+|.|+|-|.+|..++..+....
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G 207 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG 207 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 7899999999999988776653
No 444
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.95 E-value=1.9e+02 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=24.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
+|.|+| .|.+|+.+++.+.... .+|+++...
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g---~~v~~~~~~ 176 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALG---ATVTATTRS 176 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcC---CEEEEEeCC
Confidence 789999 6999999988887764 677777543
No 445
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=26.88 E-value=3e+02 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=23.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|.|.| .|.||..++.++.... ++++++.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAG---ANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CeEEEEe
Confidence 3799999 5999999988776653 6766664
No 446
>PRK08267 short chain dehydrogenase; Provisional
Probab=26.72 E-value=1e+02 Score=28.91 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
++-|.| .|.||+.+++.+.++. .+|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 688999 9999999999998864 5776664
No 447
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=26.44 E-value=96 Score=31.92 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|+|.|-|..||.++.++.... ++++.+..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 37999999999999998887764 78877754
No 448
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=26.39 E-value=82 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=24.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|+|.|.+|+.+++.+.... .+++++..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g---~~v~~~~~ 191 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG---ARVIVVDI 191 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEECC
Confidence 7899999999999988887763 67777744
No 449
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=26.08 E-value=2.2e+02 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| .|.+|+.+++.+.... ..++++..
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~~ 195 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALG---ARVIAVTR 195 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 3799999 7999999999887764 56666643
No 450
>PLN02583 cinnamoyl-CoA reductase
Probab=26.03 E-value=98 Score=30.34 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC---CEEEEEEc
Confidence 689999 9999999999998874 68877653
No 451
>PRK07023 short chain dehydrogenase; Provisional
Probab=26.02 E-value=97 Score=28.80 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
++|-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 4899999 9999999999998764 5665553
No 452
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.86 E-value=1.1e+02 Score=28.46 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=24.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|-|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r 34 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG---FDLAINDR 34 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CEEEEEec
Confidence 3577889 9999999999998774 57776653
No 453
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=25.76 E-value=1.1e+02 Score=31.51 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.8
Q ss_pred CceeEEEEcC-ChhHHHHHHHHHhCC
Q 013492 67 AKLKVAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 67 ~~ikVaInGf-GrIGr~~lr~l~~~~ 91 (442)
.++||+|.|. |.||..++-.+..++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence 3589999996 999999988777653
No 454
>PLN02858 fructose-bisphosphate aldolase
Probab=25.71 E-value=83 Score=38.70 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=26.8
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+..|||++|+|.+|..+++.|.... ++|.+.|-
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G---~~V~v~dr 355 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSN---FSVCGYDV 355 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3458999999999999999998764 68776653
No 455
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=25.39 E-value=1e+02 Score=28.81 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=23.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|+| .|.+|+.+++.+.... .+++++..
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g---~~v~~~~~ 169 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALG---ATVIGTVS 169 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcC---CEEEEEcC
Confidence 789999 8999999988777653 67776654
No 456
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=25.15 E-value=93 Score=29.80 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=24.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~ 103 (442)
=+|.|+| -|.||+.++..+.... .+++++.+.
T Consensus 140 ~~vlI~g~~~~vg~~~~~~a~~~g---~~v~~~~~~ 172 (323)
T cd05282 140 DWVIQNAANSAVGRMLIQLAKLLG---FKTINVVRR 172 (323)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 3789998 6999999988887764 677666553
No 457
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=24.86 E-value=93 Score=30.85 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=23.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||-|-| +|-||+.+++.|.++. .+++.+-+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g---~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET---SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC---CCEEEEEe
Confidence 3799999 9999999999999874 34444433
No 458
>PTZ00325 malate dehydrogenase; Provisional
Probab=24.79 E-value=1.2e+02 Score=31.32 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=42.2
Q ss_pred ccccEEEcCCCCCCC----Hh------------hHHHHHHcCCCeEEE--eCCCCCCCCceeeccCccCCC--CCCCeEe
Q 013492 157 LGIDLVIEGTGVFVD----RE------------GAGKHIQAGAKKVLI--TAPGKGDIPTYVVGVNADAYK--PDEPIIS 216 (442)
Q Consensus 157 ~gvDiVie~TG~f~~----~e------------~a~~hl~aGAkkVII--sapsk~d~pt~V~gVN~~~y~--~~~~IIS 216 (442)
.|+|+||-+.|.-.. +. -.+.-.++|.+++|+ |+|- |+-+++..-....+. |.+++|.
T Consensus 75 ~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv--dv~~~~~~~~~~~~sg~p~~~viG 152 (321)
T PTZ00325 75 RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV--NSTVPIAAETLKKAGVYDPRKLFG 152 (321)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH--HHHHHHHHhhhhhccCCChhheee
Confidence 389999999996433 11 112233467777655 3332 222222210001111 3467886
Q ss_pred cCCchhhhhHHHHHHHHHhhc
Q 013492 217 NASCTTNCLAPFVKVLDQKFG 237 (442)
Q Consensus 217 naSCTTn~Lap~lkvL~~~fG 237 (442)
- + +-=-+++-..|-+++|
T Consensus 153 ~--g-~LDs~R~r~~la~~l~ 170 (321)
T PTZ00325 153 V--T-TLDVVRARKFVAEALG 170 (321)
T ss_pred c--h-hHHHHHHHHHHHHHhC
Confidence 5 2 4666888899999998
No 459
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=24.71 E-value=3.6e+02 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=18.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 013492 70 KVAINGFGRIGRNFLRCWHGRK 91 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~ 91 (442)
+|.|+|.|.+|..+++.+....
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G 199 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG 199 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC
Confidence 6899999999999888776653
No 460
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.70 E-value=1.1e+02 Score=31.33 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.8
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCC
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~~ 91 (442)
+||+|.|. |.||..++-.+..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 48999997 999999998887654
No 461
>PRK12827 short chain dehydrogenase; Provisional
Probab=24.54 E-value=1.2e+02 Score=27.90 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=24.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.++.|.| .|.||+.+++.|..+. .+|+.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 4789999 9999999999998874 5776654
No 462
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=24.47 E-value=3.7e+02 Score=27.50 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=22.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|.|+| .|.||..++..+.... ..++.+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G---~~vi~~~ 221 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGG---GNPVAVV 221 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcC---CeEEEEc
Confidence 3799999 5999999887776653 5655553
No 463
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=24.40 E-value=1e+02 Score=30.62 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|-|-| .|-||+.+++.|..+. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688899 9999999999998874 68887754
No 464
>PRK05586 biotin carboxylase; Validated
Probab=24.17 E-value=96 Score=32.71 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=26.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-||+|.|-|.+|+.+++++.+.. +++|++..
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG---~~~v~v~~ 33 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMG---IETVAVYS 33 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC---CcEEEEcC
Confidence 48999999999999999998874 88888843
No 465
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=24.10 E-value=1.1e+02 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=25.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|.|.| .|.||+.+++.+.++. .+|+++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 4789999 9999999999998874 57777653
No 466
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.77 E-value=3e+02 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.114 Sum_probs=22.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcE-EEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~e-vvaIn 101 (442)
-+|.|+|.|.+|..+++.+.... .+ ++++.
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G---~~~v~~~~ 194 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG---ATKVVVTD 194 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37899999999999888776653 45 55553
No 467
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=23.72 E-value=1.1e+02 Score=31.17 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 70 kVaInGfGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
||.|+|-|.+|...+..|.++. .+|+.+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g---~~V~vl 30 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRG---YQVTVF 30 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CeEEEE
Confidence 8999999999999998887753 566555
No 468
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=23.70 E-value=1.2e+02 Score=28.12 Aligned_cols=31 Identities=26% Similarity=0.115 Sum_probs=24.3
Q ss_pred CceeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 67 ~~ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
|+.+|.|.| .|.||+.+++.+..+. .+|+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 445799999 8999999999998764 566543
No 469
>PRK08219 short chain dehydrogenase; Provisional
Probab=23.64 E-value=1.1e+02 Score=27.64 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=23.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.++-|.| .|.||+.+++.|.++ .+|+++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT----HTLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh----CCEEEEeC
Confidence 4789999 999999999998865 35666653
No 470
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=23.51 E-value=1.1e+02 Score=34.18 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+||.|-| .|-||+.+++.|..+. ..+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 5899999 9999999999998752 278988864
No 471
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=23.49 E-value=1.2e+02 Score=29.97 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|.|.|.+||.++++|.... --+|..+|-
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g--~~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLG--VAEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC--CCEEEEEeC
Confidence 47999999999999999998764 135655664
No 472
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.31 E-value=1.2e+02 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
+|.|.| .|.||+.+++.+.++. .+|+++.-
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 789999 9999999999998774 57666643
No 473
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=23.29 E-value=4.3e+02 Score=29.56 Aligned_cols=31 Identities=32% Similarity=0.575 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.||.|=|||-+|....+.+++.. =.+|+|.|
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD 282 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSD 282 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHhcC---CEEEEEEc
Confidence 58999999999999999888654 36788876
No 474
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=23.12 E-value=3.8e+02 Score=25.80 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=23.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-+|.|+| .|.+|...+..+.... ..++++.+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~g---~~v~~~~~ 172 (331)
T cd08273 141 QRVLIHGASGGVGQALLELALLAG---AEVYGTAS 172 (331)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3789999 6999999888776653 56766653
No 475
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.96 E-value=1.8e+02 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.0
Q ss_pred eeEEEEcCChh-HHHHHHHHHhCCCCCcEEEEEecC
Q 013492 69 LKVAINGFGRI-GRNFLRCWHGRKDSPLEVVAINDT 103 (442)
Q Consensus 69 ikVaInGfGrI-Gr~~lr~l~~~~~~~~evvaInd~ 103 (442)
-||.|.|.|.+ |+.+++.|.++. ..|..+|..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 58999999985 998999888764 466666653
No 476
>PLN02650 dihydroflavonol-4-reductase
Probab=22.87 E-value=1.1e+02 Score=30.52 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=24.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
.+|-|-| .|.||+.+++.|..+. .+|+++.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999 9999999999998874 5777653
No 477
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.85 E-value=1.4e+02 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=26.0
Q ss_pred EEEEEccCCCHHHHHH-HHHhcccccCCCceeeccC
Q 013492 351 LVVQVSKKTFAEEVNA-AFRESADNELKGILSVCDE 385 (442)
Q Consensus 351 l~v~l~k~~~~eeV~~-a~~~aa~~~lkgil~~~~~ 385 (442)
+.+++.+.+|..||++ +|++|..-||-+.|.=.++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~ 37 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSS 37 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCc
Confidence 4677888999999998 7888888899888764443
No 478
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.69 E-value=83 Score=31.45 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=22.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+||-|.| +|- ||.+++.|.+++ .+|++--
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~ 30 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTV 30 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEE
Confidence 3688888 898 999999988764 6776544
No 479
>PRK07577 short chain dehydrogenase; Provisional
Probab=22.50 E-value=1.3e+02 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+|-|.| .|.||+.+++.+.++. .+|+.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 688999 9999999999998764 5776664
No 480
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.49 E-value=2.1e+02 Score=32.40 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=63.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCC
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~ 148 (442)
+|-|-| .|-||..+.|.+...+- =+|+-.. ..+.+ .|...-+- -.+|+ . .++. .-+-+-+|
T Consensus 252 ~vLVTGagGSiGsel~~qil~~~p--~~i~l~~-~~E~~--~~~i~~el-~~~~~-~------~~~~-----~~igdVrD 313 (588)
T COG1086 252 TVLVTGGGGSIGSELCRQILKFNP--KEIILFS-RDEYK--LYLIDMEL-REKFP-E------LKLR-----FYIGDVRD 313 (588)
T ss_pred EEEEeCCCCcHHHHHHHHHHhcCC--CEEEEec-CchHH--HHHHHHHH-HhhCC-C------cceE-----EEeccccc
Confidence 789999 99999999998887642 3443332 11122 23331110 01222 0 1111 01112233
Q ss_pred CCCCC--CCCccccEEEcCC------------------CCCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccC
Q 013492 149 PVNLP--WGDLGIDLVIEGT------------------GVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVN 204 (442)
Q Consensus 149 p~~l~--W~~~gvDiVie~T------------------G~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN 204 (442)
...+. ..++.+|+|+.++ -++-+..-++..++.|+|++|.-..-|---|+=|||..
T Consensus 314 ~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaT 389 (588)
T COG1086 314 RDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGAT 389 (588)
T ss_pred HHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHH
Confidence 32221 2334577877763 34445556778889999998765444434488888864
No 481
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.49 E-value=1.8e+02 Score=30.99 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=22.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-.|||.|.|.+|-.++.-...+.- =.|++|.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GA--srIIgvD 224 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGA--SRIIGVD 224 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCc--ccEEEEe
Confidence 369999999999888766655532 3566664
No 482
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.33 E-value=1.2e+02 Score=30.60 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=23.6
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
|+.+|.|+|-|..|-.++.+|.... ++|.-+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g---~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG---IKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC---CcEEEE
Confidence 4579999999999998888876653 565444
No 483
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=22.33 E-value=4.1e+02 Score=26.49 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|.|.|.|.+|...+..+.... ..++++.
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G---~~vi~~~ 196 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQG---ATVHVMT 196 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 37999999999988877666553 5666653
No 484
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=22.25 E-value=1.1e+02 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=23.1
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 71 VaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
|-|.| .|-||+.+++.|.+.. .+++++-|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEec
Confidence 56888 9999999999998764 56666655
No 485
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=22.24 E-value=1.3e+02 Score=30.96 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHhCC
Q 013492 70 KVAINGF-GRIGRNFLRCWHGRK 91 (442)
Q Consensus 70 kVaInGf-GrIGr~~lr~l~~~~ 91 (442)
||+|.|. |.||..++-.+..+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999997 999999998776653
No 486
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=22.13 E-value=97 Score=30.29 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEE--cCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAIN--GFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaIn--GfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
++.|. |.|.+|...+.++.... .+++++..
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G---~~vi~~~~ 176 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADG---IKVINIVR 176 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 45553 69999999888776653 57777654
No 487
>PRK05884 short chain dehydrogenase; Provisional
Probab=22.09 E-value=1.3e+02 Score=28.03 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=23.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
|+-|-| .|.||+.+++.+..+. .+|+.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g---~~v~~~~ 31 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG---HKVTLVG 31 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 789999 8999999999998764 5666554
No 488
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=21.87 E-value=1.5e+02 Score=26.85 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=31.7
Q ss_pred eeEEEEcCChhHHH---HHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCc
Q 013492 69 LKVAINGFGRIGRN---FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDS 117 (442)
Q Consensus 69 ikVaInGfGrIGr~---~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDS 117 (442)
|||--.|.|+++|- ++..+..+...+.-+++||... .+....|-++|.
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~~-~~~~~~L~~qd~ 51 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPRS-VDAIDALNEQDG 51 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHCC-CHHHHHHHCCTC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEecC-chHHHHhhcCCC
Confidence 57889999999999 7777766655578888888642 332334444444
No 489
>PRK07236 hypothetical protein; Provisional
Probab=21.77 E-value=1.3e+02 Score=30.52 Aligned_cols=32 Identities=9% Similarity=-0.083 Sum_probs=24.3
Q ss_pred CceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 67 ~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
++.+|.|+|-|..|-..+..|.... ++|+-+-
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G---~~v~v~E 36 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG---WDVDVFE 36 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC---CCEEEEe
Confidence 4579999999999998888887653 5654443
No 490
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=21.71 E-value=2.6e+02 Score=27.61 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=50.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~ 147 (442)
=+|.|+| .|.+|+.+++.+.... ..++++.+. +...++-+ +|. ...+. .. .. ... +
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~~~~~~----~g~-~~v~~-~~-------~~--~~~--~ 212 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAG---YKVITTASP---KNFDLVKS----LGA-DAVFD-YH-------DP--DVV--E 212 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcC---CeEEEEECc---ccHHHHHh----cCC-CEEEE-CC-------Cc--hHH--H
Confidence 3789999 6999999988887764 577666532 22222211 221 10111 00 00 000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHc--CCCeEEE
Q 013492 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA--GAKKVLI 188 (442)
Q Consensus 148 ~p~~l~W~~~gvDiVie~TG~f~~~e~a~~hl~a--GAkkVII 188 (442)
...++. ..++|+|+|++|.-...+.+..++.. |.+-|.+
T Consensus 213 ~l~~~~--~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~ 253 (339)
T cd08249 213 DIRAAT--GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSL 253 (339)
T ss_pred HHHHhc--CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEe
Confidence 001111 23789999999963455566777877 6654444
No 491
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.35 E-value=1e+02 Score=33.59 Aligned_cols=33 Identities=12% Similarity=0.411 Sum_probs=25.8
Q ss_pred cCceeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 66 ~~~ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
+|..+|||.|.|-||--++-++..+. ++|+++.
T Consensus 7 ~~~~~I~ViGLGYVGLPlA~~fA~~G---~~ViG~D 39 (436)
T COG0677 7 NMSATIGVIGLGYVGLPLAAAFASAG---FKVIGVD 39 (436)
T ss_pred CCceEEEEEccccccHHHHHHHHHcC---CceEeEe
Confidence 34579999999999988877766653 7888873
No 492
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.94 E-value=6.5e+02 Score=23.41 Aligned_cols=106 Identities=25% Similarity=0.385 Sum_probs=61.6
Q ss_pred EEc-CChhHHHHHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCcceeeecCCcEEECCEEEEEEecCCCCC
Q 013492 73 ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVN 151 (442)
Q Consensus 73 InG-fGrIGr~~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~~~~~~~i~v~Gk~I~v~~~~~p~~ 151 (442)
|-| =|.||+.+...+..+-..++||+|+--- ... .+.|||---..| . .+++.+.++=+
T Consensus 5 IDGQGGGiG~~iv~~lr~~~~~~~eI~AlGTN-a~A-T~~MlKaGA~~g----A---TGENaIv~n~~------------ 63 (131)
T PF12953_consen 5 IDGQGGGIGKQIVEKLRKELPEEVEIIALGTN-AIA-TSAMLKAGANEG----A---TGENAIVVNAR------------ 63 (131)
T ss_pred EeCCCChhHHHHHHHHHHhCCCCcEEEEEehh-HHH-HHHHHHcCCCCc----c---cccchheeccC------------
Confidence 456 7999999999998764335999988631 121 234554211111 0 23344444321
Q ss_pred CCCCCccccEEEcCCC--------CCCCHhhHHHHHHcCCCeEEEeCCCCCCCCceeeccCccCC
Q 013492 152 LPWGDLGIDLVIEGTG--------VFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY 208 (442)
Q Consensus 152 l~W~~~gvDiVie~TG--------~f~~~e~a~~hl~aGAkkVIIsapsk~d~pt~V~gVN~~~y 208 (442)
.+|+++=..| ..++..-|+.--+.-|+|++|-- . ....+|+|+...-+
T Consensus 64 ------~aDiIvGpigIv~a~smlGEiTp~mA~AI~~S~A~KiLiPl--~-~~~~~ivG~~~~pl 119 (131)
T PF12953_consen 64 ------KADIIVGPIGIVIANSMLGEITPAMAEAIAQSPAKKILIPL--N-RCNIEIVGVENEPL 119 (131)
T ss_pred ------CCCEEECcHHHhccCcccccccHHHHHHHhcCCCCEEEEee--c-CCCCEEECCCCCCH
Confidence 3455554333 45566778888888999999832 1 12457777765543
No 493
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.60 E-value=1.6e+02 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=23.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEE
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaI 100 (442)
.++-|.| .|.||+.+++.+..+. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 3789999 8999999999987763 577666
No 494
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=20.44 E-value=70 Score=32.71 Aligned_cols=52 Identities=33% Similarity=0.397 Sum_probs=32.5
Q ss_pred ceeEEEEcCChhHHH-HHHHHHhCCCCCcEEEEEecCCChhhhhhhcccCcccccCCccee
Q 013492 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127 (442)
Q Consensus 68 ~ikVaInGfGrIGr~-~lr~l~~~~~~~~evvaInd~~~~~~la~LlkyDSt~g~f~~~v~ 127 (442)
.+.|+++|+||.||. ++|+.+.. ++.-+|..- +.+....| ..+|+--+.++.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~----~~cs~i~sr-S~~~a~~L---aE~~~a~p~d~~ 62 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVV----VACSAISSR-SRDRAQNL---AETYVAPPLDVA 62 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchh----eeehhhhhc-CHHHHhhc---hhccCCCccchh
Confidence 378999999999999 77887654 676666542 33333332 234554444443
No 495
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.34 E-value=3.6e+02 Score=27.73 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=19.0
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 013492 69 LKVAINGF-GRIGRNFLRCWHGR 90 (442)
Q Consensus 69 ikVaInGf-GrIGr~~lr~l~~~ 90 (442)
.+|+|+|- |.+|+-++..|..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~ 181 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK 181 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC
Confidence 48999995 99999999888765
No 496
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=20.27 E-value=1.4e+02 Score=31.90 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=27.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
-||-|.|-|.||.+++|++.+.. ++++++..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~G---i~~v~v~~ 33 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMG---IRSVAIYS 33 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcC---CeEEEEeC
Confidence 38999999999999999999875 89998875
No 497
>PRK07454 short chain dehydrogenase; Provisional
Probab=20.24 E-value=1.8e+02 Score=26.81 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=24.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 70 kVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
++-|.| .|.||+.+++.+.++. .+|+.+.-
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 38 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAG---WDLALVAR 38 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 688899 8999999999998874 46666653
No 498
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.18 E-value=1.6e+02 Score=27.06 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCcEEEEEec
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~~~~~evvaInd 102 (442)
.+|.|.| .|.||+.+++.+..+. .+|+.++-
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 4899999 7999999999888753 36665653
No 499
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=20.08 E-value=1e+02 Score=30.24 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=22.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCcEEEEEe
Q 013492 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (442)
Q Consensus 69 ikVaInGfGrIGr~~lr~l~~~~~~~~evvaIn 101 (442)
-+|.|+|.|.+|+.+++.+.... ...++++.
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G--~~~v~~~~ 198 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYS--PSKIIMVD 198 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCeEEEEc
Confidence 37889999999999887766553 24566543
No 500
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=20.07 E-value=1.4e+02 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCC
Q 013492 69 LKVAING-FGRIGRNFLRCWHGRK 91 (442)
Q Consensus 69 ikVaInG-fGrIGr~~lr~l~~~~ 91 (442)
+||-|-| .|-||+.+++.|.++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g 24 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT 24 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC
Confidence 3789999 8999999999998764
Done!