BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013493
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
Length = 481
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/433 (51%), Positives = 291/433 (67%), Gaps = 34/433 (7%)
Query: 6 RVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKIS 65
RV+ I YGADPTG +S+DAIL+A+ +AF+ + L+ G+ DLGG ID QGG+Y IS
Sbjct: 74 RVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLIS 133
Query: 66 KPIRFP-PGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDV 124
+P+RFP G GN+++ GGTLRAS+ FP DR+LIEL
Sbjct: 134 RPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIEL------------------------- 168
Query: 125 KDQTARTYY--EDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHF-TTQGILVQRGH 181
KD++++ Y E IT RD+L D +RGG I VI+S R I+NC+ F T GILV+ GH
Sbjct: 169 KDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGH 228
Query: 182 ETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVT 241
ET+I + FLGQ T GGD GE+ FSGTAI+L NDNA+TD IFSA IGV++ GQAN+++
Sbjct: 229 ETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLLS 288
Query: 242 RVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIV 301
VHCYNKAT FGG GI ++L RI N YLDYTGIV EDPVQ+ ++ FFLGDA I+
Sbjct: 289 GVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFIL 348
Query: 302 LKSIKGRISGLTIVENMFNGSPARNVPIIKLDGE---FSNIDQVVIERNNVNGMSLKSTA 358
LKSI G I G++IV+NMF+GS V I++LD F ++ QVV++RN+VNGM KST
Sbjct: 349 LKSIAGYIRGVSIVDNMFSGS-GHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTV 407
Query: 359 GKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESD 418
+ SV GNGT W DF+P+L+FP+ I+H QY++ V +F + + NVSDN VVVE++
Sbjct: 408 ARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTL-VASEAGVFPLHALRNVSDNRVVVETN 466
Query: 419 RAVTAVVSVAVDQ 431
VT V V V+Q
Sbjct: 467 APVTGTVYVTVNQ 479
>sp|A9L2F4|MAO1_SHEB9 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS195)
GN=maeA PE=3 SV=1
Length = 562
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 ----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|A6WSH0|MAO1_SHEB8 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS185)
GN=maeA PE=3 SV=1
Length = 562
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 ----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|B8E835|MAO1_SHEB2 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS223)
GN=maeA PE=3 SV=1
Length = 562
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 ----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|A3D0E1|MAO1_SHEB5 NAD-dependent malic enzyme OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=maeA PE=3 SV=1
Length = 562
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V V QG TL SD W+P ++ KRT
Sbjct: 513 ----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWSPEYRRYKRT 560
>sp|Q0HYM7|MAO1_SHESR NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-7) GN=maeA
PE=3 SV=1
Length = 562
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 ----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|Q0HFA9|MAO1_SHESM NAD-dependent malic enzyme OS=Shewanella sp. (strain MR-4) GN=maeA
PE=3 SV=1
Length = 562
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 ----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|A0KT69|MAO1_SHESA NAD-dependent malic enzyme OS=Shewanella sp. (strain ANA-3) GN=maeA
PE=3 SV=1
Length = 562
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 ----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|Q8EAP2|MAO1_SHEON NAD-dependent malic enzyme OS=Shewanella oneidensis (strain MR-1)
GN=maeA PE=3 SV=1
Length = 562
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAINGSGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V + QG +L ASD W P ++ KRT
Sbjct: 513 ----HSVSKHIAF--AVGKVAIEQGLSLPASDELLMQSIEDNFWKPEYRRYKRT 560
>sp|A1RNF8|MAO1_SHESW NAD-dependent malic enzyme OS=Shewanella sp. (strain W3-18-1)
GN=maeA PE=3 SV=1
Length = 562
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGTGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V V QG TL SD W P ++ KRT
Sbjct: 513 ----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWKPEYRRYKRT 560
>sp|A4Y3I1|MAO1_SHEPC NAD-dependent malic enzyme OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=maeA PE=3 SV=1
Length = 562
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G +GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGTGPLLPKLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+ +SK I F VG V V QG TL SD W P ++ KRT
Sbjct: 513 ----HAVSKHIAF--AVGKVAVEQGLTLPMSDEILQQSIEGNFWKPEYRRYKRT 560
>sp|B8FA39|TRPF_DESAA N-(5'-phosphoribosyl)anthranilate isomerase OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=trpF PE=3 SV=1
Length = 218
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 6 RVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGV 53
R+ + G DP S AIL A+ DA +V SG+E PGVKD+ V
Sbjct: 153 RMPLALAGGLDPENV---SQAILDAMPDALDVSSGVEASPGVKDMDKV 197
>sp|B8CQT6|MAO1_SHEPW NAD-dependent malic enzyme OS=Shewanella piezotolerans (strain WP3
/ JCM 13877) GN=maeA PE=3 SV=1
Length = 562
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGL------ELLPGVKDLGGVIIDF 57
N +F IG G GA SDA+L A + A S L LLP ++D+
Sbjct: 460 NSYIFPGIGLGVLAAGAERVSDAMLMASSRALAECSPLSINGEGSLLPQLEDI------- 512
Query: 58 QGGNYKISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+K+SK I F V V + +G L SD S W ++ KRT
Sbjct: 513 ----HKVSKHIAF--AVAKVAIEEGHALPTSDELLSQAIEDNFWTAEYRRYKRT 560
>sp|A1S8W7|MAO1_SHEAM NAD-dependent malic enzyme OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=maeA PE=3 SV=1
Length = 562
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYK 63
N +F IG G GAN S+ +L A + A E P KD G ++ +
Sbjct: 460 NSYIFPGIGLGVLACGANRVSNEMLMASSRAL-----AECSPLAKDGSGPLLPPLEEIHD 514
Query: 64 ISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+SK I F V V + QG L +D W P ++ KRT
Sbjct: 515 VSKHIAF--AVAKVAIEQGHALDTTDELLMQSIEANFWYPEYRRYKRT 560
>sp|A3QH80|MAO1_SHELP NAD-dependent malic enzyme OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=maeA PE=3 SV=1
Length = 562
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYK 63
N +F IG G +GA S+ +L A + A E P KD G ++ +
Sbjct: 460 NSYIFPGIGLGVLASGAKRVSNEMLMASSRAL-----AECSPLAKDGEGSLLPALEDIHS 514
Query: 64 ISKPIRFPPGVGNVVV-QGGTLRASDTFPSDRHLIELWAPNSQKLKRT 110
+SK I F VG V + QG L ASD W ++ KRT
Sbjct: 515 VSKHIAF--AVGKVAIEQGHALPASDELLMQAIEDNFWTAEYRRYKRT 560
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,086,112
Number of Sequences: 539616
Number of extensions: 7234039
Number of successful extensions: 15593
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 15575
Number of HSP's gapped (non-prelim): 19
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)