Query 013493
Match_columns 442
No_of_seqs 149 out of 185
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.1E-32 2.5E-37 282.9 28.2 248 4-283 24-298 (394)
2 PLN02218 polygalacturonase ADP 100.0 1.2E-30 2.6E-35 270.6 32.7 252 3-283 63-344 (431)
3 PLN02793 Probable polygalactur 100.0 8.2E-31 1.8E-35 272.7 26.6 250 5-283 50-329 (443)
4 PLN03003 Probable polygalactur 100.0 4.6E-31 1E-35 275.0 24.6 306 2-345 18-358 (456)
5 PLN02188 polygalacturonase/gly 100.0 3.8E-30 8.2E-35 265.1 23.7 227 3-260 32-286 (404)
6 PLN03010 polygalacturonase 100.0 5.4E-29 1.2E-33 256.9 27.7 239 4-283 43-309 (409)
7 PF12708 Pectate_lyase_3: Pect 99.8 4.7E-18 1E-22 155.4 19.9 189 7-252 1-202 (225)
8 PF00295 Glyco_hydro_28: Glyco 99.7 2.1E-14 4.5E-19 144.0 23.6 278 51-351 5-310 (326)
9 COG5434 PGU1 Endopygalactoruna 99.5 2.8E-13 6E-18 144.7 17.9 189 3-211 78-321 (542)
10 TIGR03808 RR_plus_rpt_1 twin-a 99.5 5.7E-12 1.2E-16 131.8 21.2 113 208-333 286-427 (455)
11 PF13229 Beta_helix: Right han 98.2 5.4E-06 1.2E-10 71.2 8.8 150 151-319 2-158 (158)
12 TIGR03805 beta_helix_1 paralle 98.2 0.00029 6.3E-09 71.3 21.9 73 148-233 106-179 (314)
13 PF13229 Beta_helix: Right han 97.8 0.00019 4E-09 61.7 9.9 154 173-366 1-156 (158)
14 PF05048 NosD: Periplasmic cop 97.5 0.0036 7.9E-08 59.4 14.8 150 150-322 14-167 (236)
15 TIGR03805 beta_helix_1 paralle 96.9 0.03 6.5E-07 56.9 14.8 226 27-330 1-250 (314)
16 PF05048 NosD: Periplasmic cop 96.4 0.031 6.8E-07 53.1 11.0 85 150-248 58-144 (236)
17 PLN02188 polygalacturonase/gly 96.4 0.11 2.4E-06 54.9 15.4 103 132-249 185-306 (404)
18 PLN02793 Probable polygalactur 96.1 0.22 4.8E-06 53.2 16.2 102 132-248 207-325 (443)
19 PF03718 Glyco_hydro_49: Glyco 95.7 0.21 4.5E-06 54.7 13.9 170 53-249 233-437 (582)
20 PF12218 End_N_terminal: N ter 95.1 0.025 5.3E-07 45.7 3.5 36 15-65 1-36 (67)
21 PLN02218 polygalacturonase ADP 95.0 0.66 1.4E-05 49.5 15.0 131 95-248 193-340 (431)
22 PLN03003 Probable polygalactur 95.0 0.65 1.4E-05 50.0 14.9 167 95-294 139-324 (456)
23 PLN02155 polygalacturonase 95.0 0.23 5E-06 52.4 11.4 103 132-249 175-295 (394)
24 PF07602 DUF1565: Protein of u 94.9 0.47 1E-05 47.3 12.6 43 148-191 113-156 (246)
25 PF14592 Chondroitinas_B: Chon 94.5 1.8 4E-05 46.4 16.6 88 156-249 129-236 (425)
26 PF00295 Glyco_hydro_28: Glyco 92.9 1.6 3.4E-05 44.5 12.4 132 95-249 93-241 (326)
27 PRK10123 wcaM putative colanic 89.7 17 0.00037 37.9 15.8 88 161-252 180-284 (464)
28 PLN03010 polygalacturonase 89.3 3.7 8.1E-05 43.7 11.3 162 97-291 160-338 (409)
29 PF01696 Adeno_E1B_55K: Adenov 87.8 40 0.00086 36.1 17.5 108 135-258 122-232 (386)
30 PLN02480 Probable pectinestera 86.8 23 0.0005 37.1 15.0 50 16-79 53-102 (343)
31 PLN02773 pectinesterase 86.3 44 0.00096 34.7 16.6 56 5-79 4-59 (317)
32 TIGR03808 RR_plus_rpt_1 twin-a 85.5 60 0.0013 35.5 17.6 72 256-332 137-211 (455)
33 PLN02170 probable pectinestera 84.4 51 0.0011 36.6 16.8 50 17-79 231-280 (529)
34 PLN02176 putative pectinestera 79.6 35 0.00076 35.8 12.9 50 16-79 44-93 (340)
35 PF00544 Pec_lyase_C: Pectate 77.5 20 0.00043 34.2 9.7 130 230-366 38-198 (200)
36 PRK10531 acyl-CoA thioesterase 77.4 1.1E+02 0.0023 33.2 16.0 51 16-79 87-137 (422)
37 PLN02432 putative pectinestera 76.5 67 0.0014 33.0 13.6 50 16-79 16-65 (293)
38 PLN02682 pectinesterase family 75.7 95 0.0021 33.0 14.8 47 19-79 78-124 (369)
39 PLN02713 Probable pectinestera 74.7 1E+02 0.0022 34.6 15.4 55 17-82 256-311 (566)
40 PLN02201 probable pectinestera 74.2 96 0.0021 34.4 14.9 49 17-79 212-260 (520)
41 PLN02488 probable pectinestera 73.9 1.5E+02 0.0033 32.9 16.2 48 18-79 204-251 (509)
42 PLN02313 Pectinesterase/pectin 72.6 77 0.0017 35.6 13.9 51 18-82 282-333 (587)
43 PLN02933 Probable pectinestera 71.3 1.7E+02 0.0037 32.6 16.0 49 17-79 224-272 (530)
44 PF01095 Pectinesterase: Pecti 71.0 1.3E+02 0.0028 30.8 15.8 49 17-79 6-54 (298)
45 PF00544 Pec_lyase_C: Pectate 70.1 13 0.00028 35.5 6.4 48 148-195 74-130 (200)
46 PLN02416 probable pectinestera 69.7 1.4E+02 0.0031 33.2 15.1 52 17-82 236-288 (541)
47 PLN02745 Putative pectinestera 69.2 1.1E+02 0.0024 34.5 14.3 48 18-79 292-339 (596)
48 COG3420 NosD Nitrous oxidase a 68.7 1.7E+02 0.0037 31.4 17.3 147 148-322 149-307 (408)
49 PF12708 Pectate_lyase_3: Pect 68.5 79 0.0017 28.8 11.1 99 172-294 112-217 (225)
50 PLN03043 Probable pectinestera 66.9 1.9E+02 0.0041 32.3 15.3 55 17-82 229-284 (538)
51 PLN02916 pectinesterase family 66.9 2.1E+02 0.0046 31.7 16.1 52 17-79 193-244 (502)
52 PLN02634 probable pectinestera 64.2 2E+02 0.0044 30.6 15.4 49 17-79 62-110 (359)
53 PLN02995 Probable pectinestera 63.5 2.4E+02 0.0052 31.5 15.3 54 17-82 229-283 (539)
54 PLN02304 probable pectinestera 62.8 2.2E+02 0.0048 30.5 15.1 50 16-79 80-129 (379)
55 PLN02497 probable pectinestera 62.2 1.6E+02 0.0034 30.9 13.0 50 16-79 37-86 (331)
56 PLN02301 pectinesterase/pectin 62.0 2E+02 0.0043 32.2 14.4 52 17-82 242-294 (548)
57 PLN02708 Probable pectinestera 61.9 2.7E+02 0.0058 31.2 15.3 52 18-82 248-300 (553)
58 PLN02468 putative pectinestera 60.6 2.8E+02 0.0062 31.1 16.0 48 18-79 265-312 (565)
59 PLN02506 putative pectinestera 59.5 2.8E+02 0.0061 31.0 15.0 49 17-79 238-286 (537)
60 PLN02197 pectinesterase 57.0 3.3E+02 0.0072 30.8 15.1 49 17-79 281-329 (588)
61 PLN02217 probable pectinestera 56.7 3.6E+02 0.0078 31.1 15.7 49 17-79 256-304 (670)
62 TIGR03804 para_beta_helix para 54.9 18 0.0004 25.8 3.5 40 151-191 1-40 (44)
63 PLN02990 Probable pectinestera 53.9 3.7E+02 0.008 30.3 15.1 52 17-82 265-317 (572)
64 PLN02484 probable pectinestera 51.9 4E+02 0.0086 30.1 15.5 50 17-79 278-327 (587)
65 COG5434 PGU1 Endopygalactoruna 49.0 55 0.0012 36.5 7.5 84 286-377 297-393 (542)
66 PLN02314 pectinesterase 47.7 4.6E+02 0.0099 29.6 15.5 48 18-79 285-332 (586)
67 PF01696 Adeno_E1B_55K: Adenov 43.9 3.9E+02 0.0085 28.8 12.5 115 160-322 123-240 (386)
68 PF03718 Glyco_hydro_49: Glyco 42.2 1.1E+02 0.0024 34.3 8.4 33 160-194 382-414 (582)
69 PF05223 MecA_N: NTF2-like N-t 41.8 26 0.00057 30.3 3.0 15 369-383 100-114 (118)
70 PF07602 DUF1565: Protein of u 41.5 3.9E+02 0.0084 27.0 11.8 40 141-191 93-132 (246)
71 PHA00672 hypothetical protein 39.2 67 0.0015 29.8 5.2 51 53-103 50-119 (152)
72 COG3866 PelB Pectate lyase [Ca 38.3 2.1E+02 0.0046 30.2 9.3 12 285-296 239-250 (345)
73 PF09251 PhageP22-tail: Salmon 35.0 56 0.0012 35.8 4.7 38 207-244 325-363 (549)
74 COG3866 PelB Pectate lyase [Ca 33.8 1.2E+02 0.0025 32.0 6.6 51 144-194 111-167 (345)
75 smart00656 Amb_all Amb_all dom 28.9 5.1E+02 0.011 24.6 13.9 34 286-321 155-188 (190)
76 TIGR03804 para_beta_helix para 27.2 1E+02 0.0022 22.0 3.6 37 174-223 1-38 (44)
77 PLN02665 pectinesterase family 27.0 1.1E+02 0.0023 32.6 5.2 50 16-79 73-122 (366)
78 KOG3881 Uncharacterized conser 24.3 1.1E+02 0.0025 32.9 4.7 116 175-302 220-347 (412)
79 PF14592 Chondroitinas_B: Chon 22.8 5.6E+02 0.012 28.0 9.6 146 162-333 203-374 (425)
80 PLN02671 pectinesterase 22.1 1.6E+02 0.0034 31.3 5.3 50 16-79 64-113 (359)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.1e-32 Score=282.93 Aligned_cols=248 Identities=19% Similarity=0.240 Sum_probs=184.6
Q ss_pred CCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeC-CCCcceEE-ec
Q 013493 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGNVVV-QG 81 (442)
Q Consensus 4 ~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~-pc~gni~i-~~ 81 (442)
.+++|||+||||++||++|+|+|||+||++||+.. ||++|++|+|+|++ +||.|. |||+++.+ .+
T Consensus 24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~------------gGg~v~vP~G~yl~-g~i~l~gpcksnv~l~l~ 90 (394)
T PLN02155 24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA------------SSATVVVPTGTFLL-KVITFGGPCKSKITFQVA 90 (394)
T ss_pred CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC------------CCeEEEECCCcEEE-EEEEEcccCCCCceEEEe
Confidence 46799999999999999999999999999999643 56789999999997 899999 99999874 67
Q ss_pred ceEEeCCCCCC---CcceEEEecCCCcccccceeeecccceeeecccCcccCccceee--eeeeEEEecceEecceeEec
Q 013493 82 GTLRASDTFPS---DRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDI--TFRDVLFDSGFRGGGIFVID 156 (442)
Q Consensus 82 GTLkAp~df~~---d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~i--T~rnl~~D~n~~~~GIt~~N 156 (442)
|+|+||++|+. ..+||.|...+.+.++| |++||||+.||.+..- ..+|+.. .++ +....++.+.||+++|
T Consensus 91 G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~---~~~~~~~p~~i~-~~~~~nv~i~gitl~n 165 (394)
T PLN02155 91 GTVVAPEDYRTFGNSGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS---GQNCPPGVRSIS-FNSAKDVIISGVKSMN 165 (394)
T ss_pred eEEECccccccccccceeEEEECcCCCEEEc-cEEecCceeEEEcccC---CCCCCCccccee-EEEeeeEEEECeEEEc
Confidence 99999988854 34799999999999998 9999999999964321 2244321 122 4444589999999999
Q ss_pred cccEE--EeeeE---Eeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeEE
Q 013493 157 SARIR--INNCF---FLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDV 222 (442)
Q Consensus 157 Sq~~~--I~Nc~---~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv 222 (442)
|+++| +.+|. +.++ |||||++.+|+.|.|++|+|. .||. .++|.-...+=.|.+.
T Consensus 166 Sp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~-----~gDD------cIaik~gs~nI~I~n~ 234 (394)
T PLN02155 166 SQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQ-----TGDD------CVAIGPGTRNFLITKL 234 (394)
T ss_pred CCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEe-----cCCc------eEEcCCCCceEEEEEE
Confidence 99855 56663 3333 999999999999999999998 4555 5666444444477776
Q ss_pred EEEeeeEeEEEccc-----eeEEEEEEEeccccccceeeEEEee-cccceeeeeeeeecccceeeeC
Q 013493 223 TIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKL-ADAALTRIDNCYLDYTGIVLED 283 (442)
Q Consensus 223 ~i~~a~~Gv~~~gq-----~~~~~gvh~~n~~t~~gg~gi~~~~-~~~~~~ri~ncyld~~~iv~~d 283 (442)
....+ -|+.++.. ...+++|++.|+.-.--=-|+.+|- ++.....+.|-+. ..|.|++
T Consensus 235 ~c~~G-hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f--~ni~m~~ 298 (394)
T PLN02155 235 ACGPG-HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFF--QDLVMKN 298 (394)
T ss_pred EEECC-ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEE--EeEEEcC
Confidence 66543 58888663 4457788887764222224777774 2223355666553 3555554
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.2e-30 Score=270.64 Aligned_cols=252 Identities=17% Similarity=0.219 Sum_probs=182.3
Q ss_pred CCCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCc-eEEEeceEEeC-CCCcceE-E
Q 013493 3 QNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGG-NYKISKPIRFP-PGVGNVV-V 79 (442)
Q Consensus 3 ~~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgG-tYlIs~pI~f~-pc~gni~-i 79 (442)
+.+++|||+||||++||++|+|+|||+||++||+.. ||++|++|+| +|++ +||.|. ||+.++. .
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~------------Ggg~v~vP~G~tyl~-~~i~l~gp~ks~~~l~ 129 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSN------------GAVNLLVPKGNTYLL-KSIQLTGPCKSIRTVQ 129 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcC------------CCcEEEECCCCeEEE-eeeEecCccCCceEEE
Confidence 467899999999999999999999999999999643 4578999999 6998 899999 9998866 4
Q ss_pred ecceEEeCCC---CCCCcceEEEecCCCcccccc--eeeecccceeeecccCccc-Cccceeeeeee--EEEecceEecc
Q 013493 80 QGGTLRASDT---FPSDRHLIELWAPNSQKLKRT--DAIKIDRNYVFNDVKDQTA-RTYYEDITFRD--VLFDSGFRGGG 151 (442)
Q Consensus 80 ~~GTLkAp~d---f~~d~~wI~f~~~n~l~v~G~--GtfDgqG~~~W~~~~c~~~-~~~c~~iT~rn--l~~D~n~~~~G 151 (442)
.+|+|+||++ |+....||.|...+.++++|+ |++||+|+.||.+. |+.. .+.|... ++- |....+..++|
T Consensus 130 l~g~L~~s~d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~-~~~~~~~~~~~r-P~~i~f~~~~nv~I~g 207 (431)
T PLN02218 130 IFGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNS-CKRNKAKPCTKA-PTALTFYNSKSLIVKN 207 (431)
T ss_pred EEEEEEeCCChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcc-cccCCcCccCcC-CEEEEEEccccEEEeC
Confidence 7999999874 444457999999999999997 99999999999753 4321 2345432 222 33445999999
Q ss_pred eeEeccccEE--Eeee---EEeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCc
Q 013493 152 IFVIDSARIR--INNC---FFLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN 217 (442)
Q Consensus 152 It~~NSq~~~--I~Nc---~~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~ 217 (442)
|+++||+++| +.+| .+.++ ||||||+.+|+.|.|++|+|. .||. .++|.-...+=
T Consensus 208 itl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~-----tGDD------cIaIksgs~nI 276 (431)
T PLN02218 208 LRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIG-----TGDD------CISIESGSQNV 276 (431)
T ss_pred eEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEe-----cCCc------eEEecCCCceE
Confidence 9999999955 5666 33333 999999999999999999999 4555 45554333333
Q ss_pred eeeEEEEEeeeEeEEEccc-----eeEEEEEEEeccccccceeeEEEeecccceeeeeeeeecccceeeeC
Q 013493 218 AITDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLED 283 (442)
Q Consensus 218 ~itDv~i~~a~~Gv~~~gq-----~~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~iv~~d 283 (442)
.|.|...- ..-|+.++.. ...+++|++.|+.------|+.+|--.-.-..+.|=+. ..|.|++
T Consensus 277 ~I~n~~c~-~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f--~ni~m~~ 344 (431)
T PLN02218 277 QINDITCG-PGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIF--QNIQMEN 344 (431)
T ss_pred EEEeEEEE-CCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEE--EeEEEEc
Confidence 77777664 3457777542 23577777777642222246666643223345555443 3444443
No 3
>PLN02793 Probable polygalacturonase
Probab=99.98 E-value=8.2e-31 Score=272.71 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=180.7
Q ss_pred CeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCc-eEEEeceEEeC-CCCcceEE-ec
Q 013493 5 GRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGG-NYKISKPIRFP-PGVGNVVV-QG 81 (442)
Q Consensus 5 ~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgG-tYlIs~pI~f~-pc~gni~i-~~ 81 (442)
+|+|||+||||++||++|+|+|||+||++||+.. ||++|++|+| +|++ +||.|. ||+.++++ .+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~------------ggg~v~vP~G~~fl~-~~i~l~gpcks~vtL~l~ 116 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK------------VKTRIVIPAGYTFLV-RPIDLGGPCKAKLTLQIS 116 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC------------CCCEEEECCCceEEE-EEEEECCccCCCeEEEEE
Confidence 4799999999999999999999999999999743 4578999999 5886 899999 99999874 78
Q ss_pred ceEEeCCCC---CC--CcceEEEecCCCcccccceeeecccceeeecccCccc-Cccceeeeeee--EEEecceEeccee
Q 013493 82 GTLRASDTF---PS--DRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTA-RTYYEDITFRD--VLFDSGFRGGGIF 153 (442)
Q Consensus 82 GTLkAp~df---~~--d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~-~~~c~~iT~rn--l~~D~n~~~~GIt 153 (442)
|+|+||++. +. ...||.+...+.++++|+|++||+|+.||.+ .|+.. ...|... ++- +.-..+..+.||+
T Consensus 117 g~l~~~~d~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~-~~~~~~~~~~~~r-P~~i~f~~~~nv~v~git 194 (443)
T PLN02793 117 GTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQ-SCKINHTNPCRHA-PTAITFHKCKDLRVENLN 194 (443)
T ss_pred EEEEccCChHHccCCCCceEEEEecCceEEEEeceEEECCCcccccc-cccccCCCCccCC-ceEEEEEeeccEEEECeE
Confidence 999999744 33 2369999999999999999999999999964 34321 1223322 222 3334599999999
Q ss_pred EeccccEE--Eeee---EEeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCcee
Q 013493 154 VIDSARIR--INNC---FFLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAI 219 (442)
Q Consensus 154 ~~NSq~~~--I~Nc---~~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~i 219 (442)
++||+++| +.+| .+.++ ||||||+.+|+.|.|+||+|. .||. .+.|.-.+.+=.|
T Consensus 195 l~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~-----~gDD------cIaik~~s~nI~I 263 (443)
T PLN02793 195 VIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVR-----TGDD------CISIVGNSSRIKI 263 (443)
T ss_pred EEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEe-----CCCC------eEEecCCcCCEEE
Confidence 99999866 5666 44444 999999999999999999999 4555 4555433332366
Q ss_pred eEEEEEeeeEeEEEccc-----eeEEEEEEEeccccccceeeEEEeecccceeeeeeeeecccceeeeC
Q 013493 220 TDVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLED 283 (442)
Q Consensus 220 tDv~i~~a~~Gv~~~gq-----~~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~iv~~d 283 (442)
.|+... ..-||.++.. ..-+++|++.|+.-.----|+.+|--.-....+.|-+.. .|.|++
T Consensus 264 ~n~~c~-~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~--ni~m~n 329 (443)
T PLN02793 264 RNIACG-PGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQ--NIFMEN 329 (443)
T ss_pred EEeEEe-CCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEE--eEEEec
Confidence 776654 3357777652 234777777776433333577777532234556665433 355554
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.98 E-value=4.6e-31 Score=275.04 Aligned_cols=306 Identities=18% Similarity=0.220 Sum_probs=202.0
Q ss_pred CCCCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCce-EEEeceEEeC-CCCcc-eE
Q 013493 2 LQNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGN-YKISKPIRFP-PGVGN-VV 78 (442)
Q Consensus 2 ~~~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGt-YlIs~pI~f~-pc~gn-i~ 78 (442)
..++++|||++|||++||++|+|+||++||++||+.. ||++|++|+|+ |++ +||.|+ ||++. +.
T Consensus 18 ~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~------------ggg~v~VP~G~~yl~-~pl~l~gpck~~~~~ 84 (456)
T PLN03003 18 FTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGT------------GDGQFVVPAGMTFML-QPLKFQGSCKSTPVF 84 (456)
T ss_pred eeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhcc------------CCCEEEECCCceEEe-eeeEeCCCccCccee
Confidence 3567899999999999999999999999999999643 45679999995 877 899999 99875 44
Q ss_pred E-ecceEEeCCC--CCC-CcceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecceEecceeE
Q 013493 79 V-QGGTLRASDT--FPS-DRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFV 154 (442)
Q Consensus 79 i-~~GTLkAp~d--f~~-d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n~~~~GIt~ 154 (442)
+ .+|+|+||.. +++ ...||.|.+.+++.++|+|++||+|+.||.+.. ..+..++ +....+..+.||++
T Consensus 85 ~~i~G~i~ap~~~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~-------~rP~~l~-f~~~~nv~I~gitl 156 (456)
T PLN03003 85 VQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHKG-------SRPTALK-FRSCNNLRLSGLTH 156 (456)
T ss_pred eccCceEecCccccccCCCcceEEEEcccceEEeccceEeCCchhhhhccc-------CCceEEE-EEecCCcEEeCeEE
Confidence 3 8999999874 222 236999999999999999999999999996421 1121122 44445899999999
Q ss_pred eccccEE--Eeee---EEeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceee
Q 013493 155 IDSARIR--INNC---FFLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAIT 220 (442)
Q Consensus 155 ~NSq~~~--I~Nc---~~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~it 220 (442)
+||+++| +.+| .+.++ ||||||+.+|++|.|+||+|. .||. .++|.-...+=.|.
T Consensus 157 ~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~-----tGDD------CIaiksgs~NI~I~ 225 (456)
T PLN03003 157 LDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIA-----TGDD------CIAINSGTSNIHIS 225 (456)
T ss_pred ecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEe-----cCCC------eEEeCCCCccEEEE
Confidence 9999966 5666 44443 999999999999999999999 4555 44444332233677
Q ss_pred EEEEEeeeEeEEEccc-----eeEEEEEEEeccccccceeeEEEeecccceeeeeeeeecccceeeeCCeE-EEEEceEE
Q 013493 221 DVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQ-VHVTNGFF 294 (442)
Q Consensus 221 Dv~i~~a~~Gv~~~gq-----~~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~iv~~dp~~-~~i~~~~f 294 (442)
++.... .=||.++.. ...+++|++.|+.-.=---|+.+|--.-....+.|- -|..|.|++-.. +.|...|.
T Consensus 226 n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nI--tf~nI~m~nV~~pI~Idq~Y~ 302 (456)
T PLN03003 226 GIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMI--TFNGITLDNVENPIIIDQFYN 302 (456)
T ss_pred eeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEE--EEEeEEecCccceEEEEcccC
Confidence 776653 347766443 235788888888522112367777422233456663 344555554222 23443332
Q ss_pred eecceeEe--eeccceeeeeEEeeeeccCCCCCCccEEEecC----Cccee--eEEEEe
Q 013493 295 LGDANIVL--KSIKGRISGLTIVENMFNGSPARNVPIIKLDG----EFSNI--DQVVIE 345 (442)
Q Consensus 295 lgd~~i~l--~~~~~~~~g~~i~~n~f~g~~~~~~~iv~l~g----~f~~i--~~v~v~ 345 (442)
-++..=.- ++-.-+++++.+- -|.|.-. .-+-++|++ +++.| ++|.+.
T Consensus 303 ~~~~~~~~~~~~s~v~IsnI~f~--NI~GTs~-~~~ai~l~Cs~~~PC~nI~l~ni~l~ 358 (456)
T PLN03003 303 GGDSDNAKDRKSSAVEVSKVVFS--NFIGTSK-SEYGVDFRCSERVPCTEIFLRDMKIE 358 (456)
T ss_pred CCCCCCcccCCCCCcEEEeEEEE--eEEEEeC-ccceEEEEeCCCCCeeeEEEEEEEEE
Confidence 12211000 1112366666663 3445312 223456662 45655 555554
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.97 E-value=3.8e-30 Score=265.10 Aligned_cols=227 Identities=22% Similarity=0.250 Sum_probs=165.3
Q ss_pred CCCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeC-CCCcc--eEE
Q 013493 3 QNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGN--VVV 79 (442)
Q Consensus 3 ~~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~-pc~gn--i~i 79 (442)
+..++|||+||||++||++|+|+|||+||++||+.. ||++|++|+|+|++ +||.|+ ||+.. +.+
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~------------Ggg~V~vP~G~yl~-g~i~lkgpc~~~s~v~l 98 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAST------------GAVTLLIPPGTYYI-GPVQFHGPCTNVSSLTF 98 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccC------------CCeEEEECCCeEEE-EeEEeCCCcCcceeEEE
Confidence 345799999999999999999999999999999643 46789999999998 899999 99643 433
Q ss_pred ecceEEeCCCC---CCCcceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeee--EEEecceEecceeE
Q 013493 80 QGGTLRASDTF---PSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRD--VLFDSGFRGGGIFV 154 (442)
Q Consensus 80 ~~GTLkAp~df---~~d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rn--l~~D~n~~~~GIt~ 154 (442)
+|+|++++ +....||.|...+.++++|+|++||+|+.||.+..|.. ...|... ++- |.-..+..+.||++
T Consensus 99 ---~L~~s~d~~~y~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~-~~~~~~r-P~~i~f~~~~nv~i~gitl 173 (404)
T PLN02188 99 ---TLKAATDLSRYGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPI-RKDCKLL-PTSVKFVNMNNTVVRGITS 173 (404)
T ss_pred ---EEEcCCCHHHCCCccceEEEeceeeEEEEeeEEEeCCCccccccccccc-CCCCCcC-ceEEEEEeeeeEEEeCeEE
Confidence 99999865 33346999999999999999999999999998766643 2345432 332 33345899999999
Q ss_pred eccccEE--Eeee---EEeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCc-ee
Q 013493 155 IDSARIR--INNC---FFLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN-AI 219 (442)
Q Consensus 155 ~NSq~~~--I~Nc---~~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~-~i 219 (442)
+||++++ +..| .+.++ |||||++.+|+.|.|++|+|. .||. ..+|.- +++| .|
T Consensus 174 ~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~-----~GDD------cIaiks-g~~nI~I 241 (404)
T PLN02188 174 VNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIG-----TGDD------CISIGQ-GNSQVTI 241 (404)
T ss_pred EcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEe-----CCCc------EEEEcc-CCccEEE
Confidence 9999855 5555 34443 999999999999999999999 4544 444433 3334 55
Q ss_pred eEEEEEeeeEeEEEcc----c-eeEEEEEEEeccccccceeeEEEe
Q 013493 220 TDVTIFSAAIGVLLRG----Q-ANIVTRVHCYNKATAFGGIGILVK 260 (442)
Q Consensus 220 tDv~i~~a~~Gv~~~g----q-~~~~~gvh~~n~~t~~gg~gi~~~ 260 (442)
.++.. +..-||.++. . ..-+++|++-|+.-.---.|+.+|
T Consensus 242 ~n~~c-~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriK 286 (404)
T PLN02188 242 TRIRC-GPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIK 286 (404)
T ss_pred EEEEE-cCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEE
Confidence 55544 3445777644 1 122555555555422223466666
No 6
>PLN03010 polygalacturonase
Probab=99.97 E-value=5.4e-29 Score=256.92 Aligned_cols=239 Identities=21% Similarity=0.269 Sum_probs=172.8
Q ss_pred CCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCc-eEEEeceEEeC-CCCc-ceEE-
Q 013493 4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGG-NYKISKPIRFP-PGVG-NVVV- 79 (442)
Q Consensus 4 ~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgG-tYlIs~pI~f~-pc~g-ni~i- 79 (442)
.+++|||+||||++||++|+|+|||+||++||+..+ |+++|++|+| +|++ +||.|+ ||++ ++.+
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g-----------~~g~v~vP~G~~yl~-~~i~l~~pc~~~~v~l~ 110 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEG-----------NINTLLIPSGKTYLL-QPIEFKGPCKSTSIKVQ 110 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCC-----------CceEEEECCCCeEEE-EeEEecCCCCCCcEEEE
Confidence 467999999999999999999999999999985321 1368999999 7998 799999 9975 4653
Q ss_pred ecceEEeCCCC---CC--CcceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecceEecceeE
Q 013493 80 QGGTLRASDTF---PS--DRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFV 154 (442)
Q Consensus 80 ~~GTLkAp~df---~~--d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n~~~~GIt~ 154 (442)
.+|+|+||+++ +. ...||.|...+.+.++|+|++||+|+.||. . ++ +.-..+..+.||++
T Consensus 111 l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~------------~--l~-~~~~~nv~v~gitl 175 (409)
T PLN03010 111 LDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE------------A--LH-ISKCDNLTINGITS 175 (409)
T ss_pred EccEEEccCChhhccCCCCcceEEEecccccEEeeceEEeCCCccccc------------e--EE-EEeecCeEEeeeEE
Confidence 78999999865 22 236999999999999999999999999984 1 22 33446899999999
Q ss_pred eccccEE--Eeee---EEeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceee
Q 013493 155 IDSARIR--INNC---FFLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAIT 220 (442)
Q Consensus 155 ~NSq~~~--I~Nc---~~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~it 220 (442)
+||+++| +.+| .+.++ ||||||+.+|+.|.|++|+|. .||. .++|.-.+..=.|.
T Consensus 176 ~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~-----~gDD------cIaiksgs~ni~I~ 244 (409)
T PLN03010 176 IDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQ-----TGDD------CIAINSGSSNINIT 244 (409)
T ss_pred EcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEe-----cCCC------eEEecCCCCcEEEE
Confidence 9999855 5666 33333 999999999999999999999 4555 45555433223555
Q ss_pred EEEEEeeeEeEEEccc-----eeEEEEEEEeccccccceeeEEEeecccceeeeeeeeecccceeeeC
Q 013493 221 DVTIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLED 283 (442)
Q Consensus 221 Dv~i~~a~~Gv~~~gq-----~~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~iv~~d 283 (442)
++... ..-|+.++.. ...+++|++.|+.-.----|+.+|.-.-....+.|-. |..|.|++
T Consensus 245 ~~~C~-~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nIt--f~nI~m~~ 309 (409)
T PLN03010 245 QINCG-PGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNIS--FENITLIN 309 (409)
T ss_pred EEEeE-CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeE--EEeEEEec
Confidence 55554 3346666442 2457888887776333334777775322334455533 33444443
No 7
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.80 E-value=4.7e-18 Score=155.39 Aligned_cols=189 Identities=20% Similarity=0.257 Sum_probs=111.3
Q ss_pred eeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc---
Q 013493 7 VFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG--- 82 (442)
Q Consensus 7 vfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G--- 82 (442)
.+||++|||+|||++|+|+|||+|++++-. .+|.+||||+|+|++++||.+++. +.+ .+|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~-------------~~g~~v~~P~G~Y~i~~~l~~~s~---v~l~G~g~~~ 64 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA-------------AGGGVVYFPPGTYRISGTLIIPSN---VTLRGAGGNS 64 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS-------------TTSEEEEE-SEEEEESS-EEE-TT---EEEEESSTTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc-------------CCCeEEEEcCcEEEEeCCeEcCCC---eEEEccCCCe
Confidence 479999999999999999999999944321 246889999999999998998865 322 222
Q ss_pred -eEEeCCCCCCCcceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecceE-----ecceeEec
Q 013493 83 -TLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFR-----GGGIFVID 156 (442)
Q Consensus 83 -TLkAp~df~~d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n~~-----~~GIt~~N 156 (442)
+|+.....+... . ..+...++. +. ....++++++.+|.... ..++++..
T Consensus 65 ~~~~~~~~~~~~~-~----------~~~~~~~~~----------~~----~~~~~~i~nl~i~~~~~~~~~~~~~i~~~~ 119 (225)
T PF12708_consen 65 TILFLSGSGDSFS-V----------VPGIGVFDS----------GN----SNIGIQIRNLTIDGNGIDPNNNNNGIRFNS 119 (225)
T ss_dssp EEEEECTTTSTSC-C----------EEEEEECCS----------CS----CCEEEEEEEEEEEETCGCE-SCEEEEEETT
T ss_pred eEEEecCcccccc-c----------ccceeeeec----------CC----CCceEEEEeeEEEcccccCCCCceEEEEEe
Confidence 122111111100 0 000001000 00 01113478888888441 46888888
Q ss_pred cccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecC-CCcee-eEEEEEeeeEeEEEc
Q 013493 157 SARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS-NDNAI-TDVTIFSAAIGVLLR 234 (442)
Q Consensus 157 Sq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~g-nd~~i-tDv~i~~a~~Gv~~~ 234 (442)
++..+|.||++.+.+.+||.+.......+.++... .++.++. .++.+ .|+.+.++..|+.++
T Consensus 120 ~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 183 (225)
T PF12708_consen 120 SQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHV----------------SGIFIDNGSNNVIVNNCIFNGGDNGIILG 183 (225)
T ss_dssp EEEEEEEEEEEES-SS-SEEEECCEECEEECCEEE----------------EEEEEESCEEEEEEECEEEESSSCSEECE
T ss_pred CCeEEEEeEEEEccCccEEEEEccccCcEeecccc----------------eeeeeccceeEEEECCccccCCCceeEee
Confidence 99999999999999999999985444444333222 1445542 23444 778888888886666
Q ss_pred cceeEEEEEEEec-ccccc
Q 013493 235 GQANIVTRVHCYN-KATAF 252 (442)
Q Consensus 235 gq~~~~~gvh~~n-~~t~~ 252 (442)
.|..+++++++.+ +.+++
T Consensus 184 ~~~~~i~n~~~~~~~~~gi 202 (225)
T PF12708_consen 184 NNNITISNNTFEGNCGNGI 202 (225)
T ss_dssp EEEEEEECEEEESSSSESE
T ss_pred cceEEEEeEEECCccceeE
Confidence 6777777777665 44333
No 8
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.66 E-value=2.1e-14 Score=144.04 Aligned_cols=278 Identities=20% Similarity=0.234 Sum_probs=159.2
Q ss_pred CceEEEecCceEEEeceEEeC-CCCcceE-EecceEEeCC---CCCCCcceEEEecCCCcccccceeeecccceeeeccc
Q 013493 51 GGVIIDFQGGNYKISKPIRFP-PGVGNVV-VQGGTLRASD---TFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVK 125 (442)
Q Consensus 51 Gga~V~lPgGtYlIs~pI~f~-pc~gni~-i~~GTLkAp~---df~~d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~ 125 (442)
|+.+|++|+|+|++ +|+.|+ |+..+.. ..+|+++++. .++. ..||.+.+.+.+.++|+|++||+|+.||...
T Consensus 5 ~~~~v~vP~g~~~~-~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~- 81 (326)
T PF00295_consen 5 GGGTVVVPAGTYLL-GPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWDGS- 81 (326)
T ss_dssp EEESEEESTSTEEE-EETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCSSC-
T ss_pred cCCEEEECCCCeEE-ceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhccc-
Confidence 45679999999998 899998 6644444 4799999984 2232 6799999988999999999999999999743
Q ss_pred Ccc-cCccceeeeeeeEEEecceEecceeEecccc--EEEeeeE---Eeee---------ccccEEEeeeeeEEEeeeee
Q 013493 126 DQT-ARTYYEDITFRDVLFDSGFRGGGIFVIDSAR--IRINNCF---FLHF---------TTQGILVQRGHETFISSCFL 190 (442)
Q Consensus 126 c~~-~~~~c~~iT~rnl~~D~n~~~~GIt~~NSq~--~~I~Nc~---~~~f---------NTDGIhI~~S~~V~I~nS~I 190 (442)
+.. ......+.-++ +....+.++.|++++||++ +++.+|. +.++ |||||++.+++.|+|+||+|
T Consensus 82 ~~~~~~~~~rp~~i~-~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i 160 (326)
T PF00295_consen 82 GDANNNGQRRPRLIR-FNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFI 160 (326)
T ss_dssp TTHCCSSSSSSESEE-EEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEE
T ss_pred cccccccccccceee-eeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeec
Confidence 221 01112221122 3333489999999999998 5566663 3333 99999999999999999999
Q ss_pred eeccccCCCCCCcCcceEEEEecCCCceeeEEEEEeeeEeEEEc----c-ceeEEEEEEEeccccccceeeEEEeecccc
Q 013493 191 GQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLR----G-QANIVTRVHCYNKATAFGGIGILVKLADAA 265 (442)
Q Consensus 191 gq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv~i~~a~~Gv~~~----g-q~~~~~gvh~~n~~t~~gg~gi~~~~~~~~ 265 (442)
. .||. ..+|.-...+=.|.|..+.+ .-|+.++ + .+..+++|++.|+.---.--|+.+|..-..
T Consensus 161 ~-----~gDD------~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~ 228 (326)
T PF00295_consen 161 D-----NGDD------CIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGG 228 (326)
T ss_dssp E-----SSSE------SEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTT
T ss_pred c-----cccC------cccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEeccc
Confidence 7 3333 23332222222667777653 3334442 2 224678888888765444567788852223
Q ss_pred eeeeeeeeecccceeeeCCeE-EEEEceEEeecceeEeee-ccceeeeeEEeeeeccCCCCCCccEEEecCCcce-eeEE
Q 013493 266 LTRIDNCYLDYTGIVLEDPVQ-VHVTNGFFLGDANIVLKS-IKGRISGLTIVENMFNGSPARNVPIIKLDGEFSN-IDQV 342 (442)
Q Consensus 266 ~~ri~ncyld~~~iv~~dp~~-~~i~~~~flgd~~i~l~~-~~~~~~g~~i~~n~f~g~~~~~~~iv~l~g~f~~-i~~v 342 (442)
-..+.|=. |..|.||+-.. +.|+- .+.+..---++ -...++.+.+-|= +|.... ...+.|+|.-.. +.++
T Consensus 229 ~G~v~nI~--f~ni~~~~v~~pi~i~~--~y~~~~~~~~~~~~~~i~nI~~~ni--tg~~~~-~~~i~i~~~~~~~~~ni 301 (326)
T PF00295_consen 229 GGYVSNIT--FENITMENVKYPIFIDQ--DYRDGGPCGKPPSGVSISNITFRNI--TGTSAG-SSAISIDCSPGSPCSNI 301 (326)
T ss_dssp SEEEEEEE--EEEEEEEEESEEEEEEE--EECTTEESSCSSSSSEEEEEEEEEE--EEEEST-SEEEEEE-BTTSSEEEE
T ss_pred ceEEeceE--EEEEEecCCceEEEEEe--ccccccccCcccCCceEEEEEEEee--EEEecc-ceEEEEEECCcCcEEeE
Confidence 35555533 34455543221 12221 22221111111 1235666655442 333222 234556655443 6666
Q ss_pred EEecccccc
Q 013493 343 VIERNNVNG 351 (442)
Q Consensus 343 ~v~~n~~~g 351 (442)
..++-...+
T Consensus 302 ~f~nv~i~~ 310 (326)
T PF00295_consen 302 TFENVNITG 310 (326)
T ss_dssp EEEEEEEES
T ss_pred EEEeEEEEc
Confidence 666554433
No 9
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=2.8e-13 Score=144.66 Aligned_cols=189 Identities=22% Similarity=0.276 Sum_probs=121.0
Q ss_pred CCCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEEecc
Q 013493 3 QNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGG 82 (442)
Q Consensus 3 ~~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i~~G 82 (442)
+..++|+|.+|||++||.+|+|+|||+||++ |.. .||.+|+||+|+| +++||.+++.. .+.+.+|
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~------------a~Gg~V~lPaGty-lsg~l~LKS~~-~L~l~eg 142 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CAS------------AGGGTVLLPAGTY-LSGPLFLKSNV-TLHLAEG 142 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHHHh-hhh------------hcCceEEECCcee-EeeeEEEeccc-EEEecCC
Confidence 3456999999999999999999999999965 542 2578899999999 57999998753 3445677
Q ss_pred -eEEeCC---CCCC---------C---------cceE-------------EEe-cCCCcccccceeeeccc----ceeee
Q 013493 83 -TLRASD---TFPS---------D---------RHLI-------------ELW-APNSQKLKRTDAIKIDR----NYVFN 122 (442)
Q Consensus 83 -TLkAp~---df~~---------d---------~~wI-------------~f~-~~n~l~v~G~GtfDgqG----~~~W~ 122 (442)
||++++ +|+. . .+.| ... .++...+.|.++++|++ ..+|.
T Consensus 143 atl~~~~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~ 222 (542)
T COG5434 143 ATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFS 222 (542)
T ss_pred ceeeCCCChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhh
Confidence 998876 4441 0 0011 001 11123356667777743 22443
Q ss_pred cccCcccCccceeeeee--eEEEecceEecceeEecccc--EEEeeeEEeee-----------ccccEEEeeeeeEEEee
Q 013493 123 DVKDQTARTYYEDITFR--DVLFDSGFRGGGIFVIDSAR--IRINNCFFLHF-----------TTQGILVQRGHETFISS 187 (442)
Q Consensus 123 ~~~c~~~~~~c~~iT~r--nl~~D~n~~~~GIt~~NSq~--~~I~Nc~~~~f-----------NTDGIhI~~S~~V~I~n 187 (442)
+-........-+.+-++ .+.-..|+.+.|+++.+|.. +|...|...+| |||||...+++.|.|.+
T Consensus 223 ~~g~~~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~ 302 (542)
T COG5434 223 GLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEG 302 (542)
T ss_pred cccchhhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEec
Confidence 22100000000001111 24444599999999999844 77777744444 99999999999999999
Q ss_pred eeeeeccccCCCCCCcCcceEEEE
Q 013493 188 CFLGQRSTVGGDPGEKGFSGTAID 211 (442)
Q Consensus 188 S~Igq~~t~gg~~~e~~~~gtgI~ 211 (442)
|+|-- ||....-++|.+.+
T Consensus 303 ~~fdt-----gDD~I~iksg~~~~ 321 (542)
T COG5434 303 CRFDT-----GDDCIAIKSGAGLD 321 (542)
T ss_pred cEEec-----CCceEEeecccCCc
Confidence 99983 55534333443333
No 10
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.46 E-value=5.7e-12 Score=131.83 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=73.4
Q ss_pred EEEEec-CCC-ceeeEEEEEeeeEeEEEcc----------ceeEEEEEEEecc----ccccceeeEEEeecccceeeeee
Q 013493 208 TAIDLA-SND-NAITDVTIFSAAIGVLLRG----------QANIVTRVHCYNK----ATAFGGIGILVKLADAALTRIDN 271 (442)
Q Consensus 208 tgI~l~-gnd-~~itDv~i~~a~~Gv~~~g----------q~~~~~gvh~~n~----~t~~gg~gi~~~~~~~~~~ri~n 271 (442)
+||..| +.+ +.+.+=++.+++.|+.+-+ |-|++|++.---- .---.|+|||++- -|-+
T Consensus 286 ~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ea----d~~~-- 359 (455)
T TIGR03808 286 VALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYVEA----DTAV-- 359 (455)
T ss_pred eEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEEEe----ccee--
Confidence 588888 777 8999999999999999865 7899999876541 1224689999993 2221
Q ss_pred eeecccceeeeCCeEEEEEceE--Eee----cceeEeeeccce----eee---eEEeeeeccCCCCCCccEEEec
Q 013493 272 CYLDYTGIVLEDPVQVHVTNGF--FLG----DANIVLKSIKGR----ISG---LTIVENMFNGSPARNVPIIKLD 333 (442)
Q Consensus 272 cyld~~~iv~~dp~~~~i~~~~--flg----d~~i~l~~~~~~----~~g---~~i~~n~f~g~~~~~~~iv~l~ 333 (442)
|+=|+|+.-..-|.-+| +|= -+|++=|+--|. +.| -.|.+|++++.|. + .|+.+|
T Consensus 360 -----~~n~~e~ap~~g~~~gwg~y~r~~~~~~n~~r~~~~g~~vs~~~~~g~~~~~~n~~~~~~~-g-a~~g~~ 427 (455)
T TIGR03808 360 -----TGNVVENAPSFGIVAGWGKYLRDVAISGNVIRNAFVGIGVSVVDGAGTALVNNNVISETPR-G-AVVGLD 427 (455)
T ss_pred -----ccceecCCcceeEEecchHhhhhhhhccceeeccCccEEEEEecCccceEEeCccccCCCC-c-cEeecc
Confidence 34456665444333322 222 246666665442 222 2589999999954 3 566666
No 11
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.24 E-value=5.4e-06 Score=71.17 Aligned_cols=150 Identities=22% Similarity=0.333 Sum_probs=98.7
Q ss_pred ceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecC-CCceeeEEEEEeeeE
Q 013493 151 GIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS-NDNAITDVTIFSAAI 229 (442)
Q Consensus 151 GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~g-nd~~itDv~i~~a~~ 229 (442)
||.+-++..+.|.+|.+.+...+||++..+..+.|++|.|.+ .+.||.+.+ ....|.|..|.....
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-------------~~~gi~~~~~~~~~i~~~~~~~~~~ 68 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-------------GGYGIYVSGGSNVTISNNTISDNGS 68 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-------------STTSEEEECCES-EEES-EEES-SE
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-------------CCcEEEEecCCCeEEECeEEEEccc
Confidence 666667777889999999999999999999999999999994 156788884 566889999987778
Q ss_pred eEEEc-cceeEEEEEEEeccccccceeeEEEeecccceeeeeeeeecccc---eeeeCCe--EEEEEceEEeecceeEee
Q 013493 230 GVLLR-GQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTG---IVLEDPV--QVHVTNGFFLGDANIVLK 303 (442)
Q Consensus 230 Gv~~~-gq~~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~---iv~~dp~--~~~i~~~~flgd~~i~l~ 303 (442)
|+.+. .....+++.++++. ++.||+++- ......|.+|.+..+. |.+++.- .+.|+++-|.+...-=+.
T Consensus 69 ~i~~~~~~~~~i~~~~i~~~----~~~gi~~~~-~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 69 GIYVSGSSNITIENNRIENN----GDYGIYISN-SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp EEECCS-CS-EEES-EEECS----SS-SCE-TC-EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE
T ss_pred eEEEEecCCceecCcEEEcC----CCccEEEec-cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEE
Confidence 88885 45568999999988 444888762 1467889999999865 8888877 777888888876522221
Q ss_pred eccceeeeeEEeeeec
Q 013493 304 SIKGRISGLTIVENMF 319 (442)
Q Consensus 304 ~~~~~~~g~~i~~n~f 319 (442)
... .-.++.|.+|-|
T Consensus 144 ~~~-~~~~~~v~~n~~ 158 (158)
T PF13229_consen 144 LIS-GSSNCTVTNNTF 158 (158)
T ss_dssp -TT--SS--EEES-E-
T ss_pred EEC-CCCeEEEECCCC
Confidence 111 112566776655
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.21 E-value=0.00029 Score=71.25 Aligned_cols=73 Identities=14% Similarity=0.307 Sum_probs=51.9
Q ss_pred EecceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEEEEe
Q 013493 148 RGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFS 226 (442)
Q Consensus 148 ~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~i~~ 226 (442)
..-||....|+...|.+|++.+-..+||.+..|+.+.|+++.+.. ...||.++ +.++.|.|=.+..
T Consensus 106 ~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-------------n~~GI~i~~S~~~~v~~N~~~~ 172 (314)
T TIGR03805 106 GAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-------------NVAGIEIENSQNADVYNNIATN 172 (314)
T ss_pred CcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc-------------CcceEEEEecCCcEEECCEEec
Confidence 355777777888888888887776668888888888888888751 13577777 6666666666665
Q ss_pred eeEeEEE
Q 013493 227 AAIGVLL 233 (442)
Q Consensus 227 a~~Gv~~ 233 (442)
-..|+++
T Consensus 173 N~~Gi~v 179 (314)
T TIGR03805 173 NTGGILV 179 (314)
T ss_pred cceeEEE
Confidence 5667766
No 13
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.79 E-value=0.00019 Score=61.66 Aligned_cols=154 Identities=22% Similarity=0.359 Sum_probs=86.8
Q ss_pred ccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCc-eeeEEEEEeeeEeEEEcc-ceeEEEEEEEecccc
Q 013493 173 QGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDN-AITDVTIFSAAIGVLLRG-QANIVTRVHCYNKAT 250 (442)
Q Consensus 173 DGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~-~itDv~i~~a~~Gv~~~g-q~~~~~gvh~~n~~t 250 (442)
|||++..+..+.|++|.|.+. .+.||.+.+... .|.|..|.....|+.+.+ ....+++..+.+..
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~~~~~i~~~~~~~~~- 67 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNN------------GGDGIHVSGSSNITIENCTISNGGYGIYVSGGSNVTISNNTISDNG- 67 (158)
T ss_dssp -CEEETTCEC-EEESEEEESS------------SSECEEE-SSCESEEES-EEESSTTSEEEECCES-EEES-EEES-S-
T ss_pred CEEEEECCcCeEEeeeEEEeC------------CCeEEEEEcCCCeEEECeEEECCCcEEEEecCCCeEEECeEEEEcc-
Confidence 799999999999999999933 267888886666 777777777777888766 45677777777765
Q ss_pred ccceeeEEEeecccceeeeeeeeecccceeeeCCeEEEEEceEEeecceeEeeeccceeeeeEEeeeeccCCCCCCccEE
Q 013493 251 AFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPII 330 (442)
Q Consensus 251 ~~gg~gi~~~~~~~~~~ri~ncyld~~~iv~~dp~~~~i~~~~flgd~~i~l~~~~~~~~g~~i~~n~f~g~~~~~~~iv 330 (442)
.||.+. +..-..|.+|-+.... +.-|.|+. .-+.+.|.+|-|...+..++-+.
T Consensus 68 ----~~i~~~--~~~~~~i~~~~i~~~~------------------~~gi~~~~---~~~~~~i~~n~~~~~~~~gi~~~ 120 (158)
T PF13229_consen 68 ----SGIYVS--GSSNITIENNRIENNG------------------DYGIYISN---SSSNVTIENNTIHNNGGSGIYLE 120 (158)
T ss_dssp ----EEEECC--S-CS-EEES-EEECSS------------------S-SCE-TC---EECS-EEES-EEECCTTSSCEEE
T ss_pred ----ceEEEE--ecCCceecCcEEEcCC------------------CccEEEec---cCCCEEEEeEEEEeCcceeEEEE
Confidence 455544 3355555555554441 11233332 34456777777776644453333
Q ss_pred EecCCcceeeEEEEecccccceeeeeeeeeeeeccC
Q 013493 331 KLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGN 366 (442)
Q Consensus 331 ~l~g~f~~i~~v~v~~n~~~gm~~~~t~~~~~~~~~ 366 (442)
.-.+.--.|..-.+.+|...|+.+.......++.+|
T Consensus 121 ~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n 156 (158)
T PF13229_consen 121 GGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNN 156 (158)
T ss_dssp ECC--S-EEECEEEECESSEEEE-TT-SS--EEES-
T ss_pred CCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECC
Confidence 333334555777777777888887777666666655
No 14
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.49 E-value=0.0036 Score=59.43 Aligned_cols=150 Identities=24% Similarity=0.317 Sum_probs=106.8
Q ss_pred cceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEEEEeee
Q 013493 150 GGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFSAA 228 (442)
Q Consensus 150 ~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~i~~a~ 228 (442)
.||.+.++....|.++.+ ....|||.+..+..+.|+++.|.. +..||.++ +.+..|.+-.|....
T Consensus 14 ~Gi~l~~~~~~~i~~n~i-~~~~~gi~~~~s~~~~I~~n~i~~-------------~~~GI~~~~s~~~~i~~n~i~~n~ 79 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTI-SNSRDGIYVENSDNNTISNNTISN-------------NRYGIHLMGSSNNTIENNTISNNG 79 (236)
T ss_pred CcEEEEeCCCCEEEcCEE-EeCCCEEEEEEcCCeEEEeeEEEC-------------CCeEEEEEccCCCEEEeEEEEccC
Confidence 777777777777776655 236788888889999999988871 15788888 445688888888777
Q ss_pred EeEEEccce-eEEEEEEEeccccccceeeEEEeecccceeeeeeeee--cccceeeeCCeEEEEEceEEeecceeEeeec
Q 013493 229 IGVLLRGQA-NIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYL--DYTGIVLEDPVQVHVTNGFFLGDANIVLKSI 305 (442)
Q Consensus 229 ~Gv~~~gq~-~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyl--d~~~iv~~dp~~~~i~~~~flgd~~i~l~~~ 305 (442)
.|+.+.... ++|++-++.+... ||+|+- ..-.+|.++-+ ...+|.+++.-..+|++.-|.+....=|.-.
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~-----GI~l~~--s~~~~I~~N~i~~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGY-----GIYLYG--SSNNTISNNTISNNGYGIYLSSSSNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCc-----eEEEee--CCceEEECcEEeCCCEEEEEEeCCCCEEECeEEeCCCccceEEe
Confidence 888887776 7888888877754 787663 34456777766 5668888888888888888887733322211
Q ss_pred cceeeeeEEeeeeccCC
Q 013493 306 KGRISGLTIVENMFNGS 322 (442)
Q Consensus 306 ~~~~~g~~i~~n~f~g~ 322 (442)
..-.+-.|.+|.| ..
T Consensus 153 -~~s~~n~I~~N~f-~N 167 (236)
T PF05048_consen 153 -SGSSGNTIYNNNF-NN 167 (236)
T ss_pred -ccCCCCEEECCCc-cC
Confidence 1124477888888 44
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.86 E-value=0.03 Score=56.86 Aligned_cols=226 Identities=19% Similarity=0.268 Sum_probs=135.4
Q ss_pred HHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEEecceEEeCCCCCCCcceEEEecCCCcc
Q 013493 27 ILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQK 106 (442)
Q Consensus 27 fqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i~~GTLkAp~df~~d~~wI~f~~~n~l~ 106 (442)
||+|+.+|-. |-+|+||+|+|.++++|.+.. .++++ +.. ..+...|.+.....
T Consensus 1 iQ~Ai~~A~~---------------GDtI~l~~G~Y~~~~~l~I~~--~~Iti-----~G~---g~~~tvid~~~~~~-- 53 (314)
T TIGR03805 1 LQEALIAAQP---------------GDTIVLPEGVFQFDRTLSLDA--DGVTI-----RGA---GMDETILDFSGQVG-- 53 (314)
T ss_pred CHhHHhhCCC---------------CCEEEECCCEEEcceeEEEeC--CCeEE-----Eec---CCCccEEecccCCC--
Confidence 5778776532 357999999999877787751 12433 110 11112444433210
Q ss_pred cccceeeecccceeeecccCcccCccceeeeeeeEEEecceEecceeEeccccEEEeeeEEeee-------ccccEEEee
Q 013493 107 LKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHF-------TTQGILVQR 179 (442)
Q Consensus 107 v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n~~~~GIt~~NSq~~~I~Nc~~~~f-------NTDGIhI~~ 179 (442)
++..+ ...+..++++++.+. +....||.+..+..+.|.+|.+..- .-+||....
T Consensus 54 --~~~~i----------------~v~a~~VtI~~ltI~-~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~ 114 (314)
T TIGR03805 54 --GAEGL----------------LVTSDDVTLSDLAVE-NTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVE 114 (314)
T ss_pred --CCceE----------------EEEeCCeEEEeeEEE-cCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEec
Confidence 00000 012455667776653 3345688888888888999877522 458999999
Q ss_pred eeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEEEEeeeEeEEEc-cceeEEEEEEEeccccccceeeE
Q 013493 180 GHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFSAAIGVLLR-GQANIVTRVHCYNKATAFGGIGI 257 (442)
Q Consensus 180 S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~i~~a~~Gv~~~-gq~~~~~gvh~~n~~t~~gg~gi 257 (442)
|+.+.|+++.+. |.. ..||.+. +++..|.+=.+.....||.+- .+.+.+.+=++++.. .||
T Consensus 115 s~~v~I~~n~i~------g~~------d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~S~~~~v~~N~~~~N~-----~Gi 177 (314)
T TIGR03805 115 STNVLVEDSYVR------GAS------DAGIYVGQSQNIVVRNNVAEENVAGIEIENSQNADVYNNIATNNT-----GGI 177 (314)
T ss_pred cCCEEEECCEEE------CCC------cccEEECCCCCeEEECCEEccCcceEEEEecCCcEEECCEEeccc-----eeE
Confidence 999999999996 211 3588888 667788888888888898884 333344444444442 367
Q ss_pred EE-eecccceeeeeeeeecccceeeeCCeEEEEEceEEeec--------ceeEee--ecccee----eeeEEeeeeccCC
Q 013493 258 LV-KLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGD--------ANIVLK--SIKGRI----SGLTIVENMFNGS 322 (442)
Q Consensus 258 ~~-~~~~~~~~ri~ncyld~~~iv~~dp~~~~i~~~~flgd--------~~i~l~--~~~~~~----~g~~i~~n~f~g~ 322 (442)
++ .+|++.+-.- ..+.|.++.|.+. ++.+.. +-+|.+ ..+.|.+|.|.+.
T Consensus 178 ~v~~~p~~~~~~s---------------~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n 242 (314)
T TIGR03805 178 LVFDLPGLPQPGG---------------SNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNN 242 (314)
T ss_pred EEeecCCCCcCCc---------------cceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCC
Confidence 65 4566422111 2445555555544 233311 223444 7788999999988
Q ss_pred CCCCccEE
Q 013493 323 PARNVPII 330 (442)
Q Consensus 323 ~~~~~~iv 330 (442)
...++-++
T Consensus 243 ~~~~i~~~ 250 (314)
T TIGR03805 243 DTANVLIS 250 (314)
T ss_pred cceeEEEE
Confidence 66665554
No 16
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.44 E-value=0.031 Score=53.08 Aligned_cols=85 Identities=26% Similarity=0.292 Sum_probs=44.4
Q ss_pred cceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEEEEeee
Q 013493 150 GGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFSAA 228 (442)
Q Consensus 150 ~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~i~~a~ 228 (442)
.||.+..|....|.+|.+.+.. +||.+..+....|+++.|. + . ..||.|. ++++.|.+-.|....
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~------~-n------~~GI~l~~s~~~~I~~N~i~~~~ 123 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTIS------N-N------GYGIYLYGSSNNTISNNTISNNG 123 (236)
T ss_pred eEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEec------C-C------CceEEEeeCCceEEECcEEeCCC
Confidence 3455555555555555443333 6666666665566655555 1 0 1255555 333456655555666
Q ss_pred EeEEEcc-ceeEEEEEEEecc
Q 013493 229 IGVLLRG-QANIVTRVHCYNK 248 (442)
Q Consensus 229 ~Gv~~~g-q~~~~~gvh~~n~ 248 (442)
.||.+.. ..+++++=++.+.
T Consensus 124 ~GI~l~~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 124 YGIYLSSSSNNTITGNTISNN 144 (236)
T ss_pred EEEEEEeCCCCEEECeEEeCC
Confidence 6666644 3555555555544
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.36 E-value=0.11 Score=54.91 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=71.9
Q ss_pred cceeeeeeeEEEecc---eEecceeEeccccEEEeeeEEeeeccccEEEee-eeeEEEeeeeeeeccccCCCCCCcCcce
Q 013493 132 YYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFTTQGILVQR-GHETFISSCFLGQRSTVGGDPGEKGFSG 207 (442)
Q Consensus 132 ~c~~iT~rnl~~D~n---~~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~-S~~V~I~nS~Igq~~t~gg~~~e~~~~g 207 (442)
.|+.++++++.++.. -.-.||.+-+|+.++|.+|++ .-.+|.|.+.+ ++.+.|+++..+ + |
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I-~~GDDcIaiksg~~nI~I~n~~c~--------~------g 249 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRI-GTGDDCISIGQGNSQVTITRIRCG--------P------G 249 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEE-eCCCcEEEEccCCccEEEEEEEEc--------C------C
Confidence 577788888877762 245788888899999999966 55899999974 569999999886 2 3
Q ss_pred EEEEecC------CCc----eeeEEEEEeeeEeEEEc-----cceeEEEEEEEeccc
Q 013493 208 TAIDLAS------NDN----AITDVTIFSAAIGVLLR-----GQANIVTRVHCYNKA 249 (442)
Q Consensus 208 tgI~l~g------nd~----~itDv~i~~a~~Gv~~~-----gq~~~~~gvh~~n~~ 249 (442)
-||.+.+ .++ .|.|..|.....|+.+- +..-.+++|++-|..
T Consensus 250 hGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~ 306 (404)
T PLN02188 250 HGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIV 306 (404)
T ss_pred CcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEE
Confidence 4677653 111 46666677777777772 122356777766653
No 18
>PLN02793 Probable polygalacturonase
Probab=96.10 E-value=0.22 Score=53.19 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred cceeeeeeeEEEecc---eEecceeEeccccEEEeeeEEeeeccccEEEe-eeeeEEEeeeeeeeccccCCCCCCcCcce
Q 013493 132 YYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFTTQGILVQ-RGHETFISSCFLGQRSTVGGDPGEKGFSG 207 (442)
Q Consensus 132 ~c~~iT~rnl~~D~n---~~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~-~S~~V~I~nS~Igq~~t~gg~~~e~~~~g 207 (442)
.|+.++++++.++.. ..-+||.+-+|+.++|.||++ .-.+|.|.+. .++.|.|+|+..+ + |
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I-~~gDDcIaik~~s~nI~I~n~~c~--------~------G 271 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIV-RTGDDCISIVGNSSRIKIRNIACG--------P------G 271 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEE-eCCCCeEEecCCcCCEEEEEeEEe--------C------C
Confidence 577777888877762 355788888888899999866 4589999996 6899999999987 2 3
Q ss_pred EEEEecC--C---Cc-----eeeEEEEEeeeEeEEEc---cceeEEEEEEEecc
Q 013493 208 TAIDLAS--N---DN-----AITDVTIFSAAIGVLLR---GQANIVTRVHCYNK 248 (442)
Q Consensus 208 tgI~l~g--n---d~-----~itDv~i~~a~~Gv~~~---gq~~~~~gvh~~n~ 248 (442)
-||.+.+ . .. .|.|..|.....|+.+- |..-.+++|++-|.
T Consensus 272 hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 272 HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeE
Confidence 4566653 1 12 34444444555566552 22235777777664
No 19
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=95.69 E-value=0.21 Score=54.72 Aligned_cols=170 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred eEEEecCceEEEece--EEeCCCCcceEEecceE-EeCCCCCCCcceEEEecCCCcccccceeeecccceeee-------
Q 013493 53 VIIDFQGGNYKISKP--IRFPPGVGNVVVQGGTL-RASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFN------- 122 (442)
Q Consensus 53 a~V~lPgGtYlIs~p--I~f~pc~gni~i~~GTL-kAp~df~~d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~------- 122 (442)
-++|+++|.|-|..- +++++..=-+-+.+|.. |..-.|. ..-....+.|.|.|.|.- ..|.
T Consensus 233 ~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGAf~~~--------~~~~nv~i~G~GVLSGe~-Yvy~A~~~e~y 303 (582)
T PF03718_consen 233 DTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGAFEYT--------DTQQNVKITGRGVLSGEQ-YVYEADTEESY 303 (582)
T ss_dssp SEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-EEE-----------SSEEEEESSSEEE-TT-S-TTBBCCCTT
T ss_pred ceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEEEEEc--------cCCceEEEEeeEEEcCcc-eeEeccCCCCc
Confidence 478999999988321 55554321122344432 2211111 233356667778887732 2221
Q ss_pred -----cccCcccCccceee-eeeeEEEecceEecceeEecccc--EEE------------eeeEEee---eccccEEEee
Q 013493 123 -----DVKDQTARTYYEDI-TFRDVLFDSGFRGGGIFVIDSAR--IRI------------NNCFFLH---FTTQGILVQR 179 (442)
Q Consensus 123 -----~~~c~~~~~~c~~i-T~rnl~~D~n~~~~GIt~~NSq~--~~I------------~Nc~~~~---fNTDGIhI~~ 179 (442)
..+|+. .|-.. .+.+..-..+..+.|+++.++.. +.| .|-+..+ +|||||.+-.
T Consensus 304 ~~~s~A~~~~~---~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~ 380 (582)
T PF03718_consen 304 LHLSGAVKCHR---ESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP 380 (582)
T ss_dssp SB-SSC---TT---TB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B--T
T ss_pred cccccccccch---hhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCccccC
Confidence 112332 22222 11111111256778888877765 333 2222222 2999999986
Q ss_pred eeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeEEEEEeeeEe--EEEccceeEEEEEEEeccc
Q 013493 180 GHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIG--VLLRGQANIVTRVHCYNKA 249 (442)
Q Consensus 180 S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv~i~~a~~G--v~~~gq~~~~~gvh~~n~~ 249 (442)
++- |+||||.- . | -+|.|--++-.|.|++++-..-| +.++=-.--+++|++.|..
T Consensus 381 nS~--i~dcF~h~----n-D--------D~iKlYhS~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~ 437 (582)
T PF03718_consen 381 NST--IRDCFIHV----N-D--------DAIKLYHSNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENID 437 (582)
T ss_dssp T-E--EEEEEEEE----S-S---------SEE--STTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEE
T ss_pred CCe--eeeeEEEe----c-C--------chhheeecCcceeeeEEEecCCCCeEEeeccccccCceEEeeeE
Confidence 664 58999981 1 1 24666667778999999973333 3333333347888888875
No 20
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=95.10 E-value=0.025 Score=45.69 Aligned_cols=36 Identities=36% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEe
Q 013493 15 ADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKIS 65 (442)
Q Consensus 15 AdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs 65 (442)
|++||++|+|+||.+|++++- +|-.|..-|=||++|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~---------------~g~~IDg~GlTykVs 36 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASP---------------VGRKIDGAGLTYKVS 36 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----------------TTS-EE-TT-EEEES
T ss_pred CCCccccCcHHHHHHHHhccC---------------CCeEEecCCceEEEe
Confidence 789999999999999998742 245688888899995
No 21
>PLN02218 polygalacturonase ADPG
Probab=95.01 E-value=0.66 Score=49.55 Aligned_cols=131 Identities=17% Similarity=0.309 Sum_probs=78.0
Q ss_pred ceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecc---eEecceeEeccccEEEeeeEEeeec
Q 013493 95 HLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFT 171 (442)
Q Consensus 95 ~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n---~~~~GIt~~NSq~~~I~Nc~~~~fN 171 (442)
+.|.|.....+.+++ +-.+-+..|.-. -..|..++++++.++.. -.-.||.+-+|+.++|.+|++ .-.
T Consensus 193 ~~i~f~~~~nv~I~g---itl~nSp~w~i~-----~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I-~tG 263 (431)
T PLN02218 193 TALTFYNSKSLIVKN---LRVRNAQQIQIS-----IEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSII-GTG 263 (431)
T ss_pred EEEEEEccccEEEeC---eEEEcCCCEEEE-----EEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEE-ecC
Confidence 456666655555543 222223334211 13577777777777652 245778888888888888877 447
Q ss_pred cccEEEeee-eeEEEeeeeeeeccccCCCCCCcCcceEEEEecC--C---CceeeEEE-----EEeeeEeEEEc---cce
Q 013493 172 TQGILVQRG-HETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS--N---DNAITDVT-----IFSAAIGVLLR---GQA 237 (442)
Q Consensus 172 TDGIhI~~S-~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~g--n---d~~itDv~-----i~~a~~Gv~~~---gq~ 237 (442)
+|.|.|.++ +.|.|+|++++ + |-||.+.+ . ...|.|+. |....-|+.+- |..
T Consensus 264 DDcIaIksgs~nI~I~n~~c~--------~------GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~ 329 (431)
T PLN02218 264 DDCISIESGSQNVQINDITCG--------P------GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGS 329 (431)
T ss_pred CceEEecCCCceEEEEeEEEE--------C------CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCC
Confidence 999999985 58999999997 2 33566552 2 12444444 44445555442 222
Q ss_pred eEEEEEEEecc
Q 013493 238 NIVTRVHCYNK 248 (442)
Q Consensus 238 ~~~~gvh~~n~ 248 (442)
-.+++|++-|.
T Consensus 330 G~v~nI~f~ni 340 (431)
T PLN02218 330 GTASNIIFQNI 340 (431)
T ss_pred eEEEEEEEEeE
Confidence 35666666654
No 22
>PLN03003 Probable polygalacturonase At3g15720
Probab=95.00 E-value=0.65 Score=50.05 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=97.0
Q ss_pred ceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEec---ceEecceeEeccccEEEeeeEEeeec
Q 013493 95 HLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDS---GFRGGGIFVIDSARIRINNCFFLHFT 171 (442)
Q Consensus 95 ~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~---n~~~~GIt~~NSq~~~I~Nc~~~~fN 171 (442)
.+|.|.....+.+++= -..-+..|.-. -..|..++++++.++. .-.-+||.+-.|+.++|.||++ .-.
T Consensus 139 ~~l~f~~~~nv~I~gi---tl~NSp~w~i~-----i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I-~tG 209 (456)
T PLN03003 139 TALKFRSCNNLRLSGL---THLDSPMAHIH-----ISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCII-ATG 209 (456)
T ss_pred eEEEEEecCCcEEeCe---EEecCCcEEEE-----EeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEE-ecC
Confidence 5677777666655541 11122223211 1367778888888876 2345788888899999999866 558
Q ss_pred cccEEEeee-eeEEEeeeeeeeccccCCCCCCcCcceEEEEec--CCC---ceee-----EEEEEeeeEeEEEc---cce
Q 013493 172 TQGILVQRG-HETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA--SND---NAIT-----DVTIFSAAIGVLLR---GQA 237 (442)
Q Consensus 172 TDGIhI~~S-~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~--gnd---~~it-----Dv~i~~a~~Gv~~~---gq~ 237 (442)
+|.|.+.++ +.+.|+++..+ + |-||.+. |.+ ..|. |..|....-|+.+- |..
T Consensus 210 DDCIaiksgs~NI~I~n~~c~--------~------GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~ 275 (456)
T PLN03003 210 DDCIAINSGTSNIHISGIDCG--------P------GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGS 275 (456)
T ss_pred CCeEEeCCCCccEEEEeeEEE--------C------CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCC
Confidence 999999975 59999999987 2 3356665 322 2244 44444444566552 222
Q ss_pred eEEEEEEEeccccccceeeEEEeecccceeeeeeeeecccce--eeeCCeEEEEEceEE
Q 013493 238 NIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGI--VLEDPVQVHVTNGFF 294 (442)
Q Consensus 238 ~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~i--v~~dp~~~~i~~~~f 294 (442)
-.+++|++-|.. ++=... -=.|+-||-+...- -.++|..++|++=-|
T Consensus 276 G~v~nItf~nI~---------m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f 324 (456)
T PLN03003 276 GYARMITFNGIT---------LDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEVSKVVF 324 (456)
T ss_pred eEEEEEEEEeEE---------ecCccc-eEEEEcccCCCCCCCcccCCCCCcEEEeEEE
Confidence 347777777653 111111 11455677654321 123454566665444
No 23
>PLN02155 polygalacturonase
Probab=94.99 E-value=0.23 Score=52.40 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=67.6
Q ss_pred cceeeeeeeEEEecce---EecceeEeccccEEEeeeEEeeeccccEEEee-eeeEEEeeeeeeeccccCCCCCCcCcce
Q 013493 132 YYEDITFRDVLFDSGF---RGGGIFVIDSARIRINNCFFLHFTTQGILVQR-GHETFISSCFLGQRSTVGGDPGEKGFSG 207 (442)
Q Consensus 132 ~c~~iT~rnl~~D~n~---~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~-S~~V~I~nS~Igq~~t~gg~~~e~~~~g 207 (442)
.|+.++++++.++... .-.||.+..|+.++|.+|++ .-.+|.|.+.. ++.+.|+++..+ + |
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I-~~gDDcIaik~gs~nI~I~n~~c~--------~------G 239 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTV-QTGDDCVAIGPGTRNFLITKLACG--------P------G 239 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEE-ecCCceEEcCCCCceEEEEEEEEE--------C------C
Confidence 5666677777666522 34677777788888888865 55899999997 579999999887 2 3
Q ss_pred EEEEecC-----CCceeeE-----EEEEeeeEeEEE----ccceeEEEEEEEeccc
Q 013493 208 TAIDLAS-----NDNAITD-----VTIFSAAIGVLL----RGQANIVTRVHCYNKA 249 (442)
Q Consensus 208 tgI~l~g-----nd~~itD-----v~i~~a~~Gv~~----~gq~~~~~gvh~~n~~ 249 (442)
-||.+.+ ...-|.| ..|.+...|+.+ ++..-.+++|++-|..
T Consensus 240 hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~ 295 (394)
T PLN02155 240 HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLV 295 (394)
T ss_pred ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEE
Confidence 4566653 2233444 444665556666 2223457777777653
No 24
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=94.88 E-value=0.47 Score=47.31 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=26.8
Q ss_pred EecceeEeccccEEEeeeEEeeeccccEEEeeee-eEEEeeeeee
Q 013493 148 RGGGIFVIDSARIRINNCFFLHFTTQGILVQRGH-ETFISSCFLG 191 (442)
Q Consensus 148 ~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~-~V~I~nS~Ig 191 (442)
++.||.+..+ ...|.||+|.+...+||.+.... .-.|.+-.|.
T Consensus 113 ~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 113 RGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 4444433333 45578999988888998887664 4445554444
No 25
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.49 E-value=1.8 Score=46.36 Aligned_cols=88 Identities=16% Similarity=0.298 Sum_probs=35.1
Q ss_pred ccccEEEeeeEEeeeccccEEEee----------eeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeE--EE
Q 013493 156 DSARIRINNCFFLHFTTQGILVQR----------GHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITD--VT 223 (442)
Q Consensus 156 NSq~~~I~Nc~~~~fNTDGIhI~~----------S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itD--v~ 223 (442)
.++.-.|++|+|.+-.+.|-.+.- ..+-.|.+.+++.++..|+- .|-+|.+.-+...++| ++
T Consensus 129 ~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~N------ggEtIRiG~S~~S~~~s~t~ 202 (425)
T PF14592_consen 129 YGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGN------GGETIRIGTSHSSMSDSNTT 202 (425)
T ss_dssp ---S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---------SEEE-SSTT-B-----E
T ss_pred eccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCC------CceeEEEeccccccccccee
Confidence 556667999999888666644441 22446999999998887763 3556777644333322 11
Q ss_pred E-----E---eeeEeEEEccceeEEEEEEEeccc
Q 013493 224 I-----F---SAAIGVLLRGQANIVTRVHCYNKA 249 (442)
Q Consensus 224 i-----~---~a~~Gv~~~gq~~~~~gvh~~n~~ 249 (442)
| - |-.==|.+-...|++++=+||+|+
T Consensus 203 Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~ 236 (425)
T PF14592_consen 203 VENNLFERCDGEVEIISVKSSDNTIRNNTFRESQ 236 (425)
T ss_dssp EES-EEEEE-SSSEEEEEESBT-EEES-EEES-S
T ss_pred eecchhhhcCCceeEEEeecCCceEeccEEEecc
Confidence 1 0 111123445556666666666665
No 26
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=92.90 E-value=1.6 Score=44.53 Aligned_cols=132 Identities=17% Similarity=0.330 Sum_probs=84.1
Q ss_pred ceEEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecc---eEecceeEeccccEEEeeeEEeeec
Q 013493 95 HLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFT 171 (442)
Q Consensus 95 ~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n---~~~~GIt~~NSq~~~I~Nc~~~~fN 171 (442)
.++.|...+.+.+++ +-..-+..|... -..|..++++++.++.. ..-.||.+..|+.+.|.||++ .-.
T Consensus 93 ~~i~~~~~~~~~i~~---i~~~nsp~w~~~-----~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i-~~g 163 (326)
T PF00295_consen 93 RLIRFNNCKNVTIEG---ITIRNSPFWHIH-----INDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFI-DNG 163 (326)
T ss_dssp ESEEEEEEEEEEEES---EEEES-SSESEE-----EESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEE-ESS
T ss_pred ceeeeeeecceEEEe---eEecCCCeeEEE-----EEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeec-ccc
Confidence 567776655544443 112222334211 13577788888877763 346789999999999999977 457
Q ss_pred cccEEEeeee-eEEEeeeeeeeccccCCCCCCcCcceEEEEec--CCC--------ceeeEEEEEeeeEeEEEc---cce
Q 013493 172 TQGILVQRGH-ETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA--SND--------NAITDVTIFSAAIGVLLR---GQA 237 (442)
Q Consensus 172 TDGIhI~~S~-~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~--gnd--------~~itDv~i~~a~~Gv~~~---gq~ 237 (442)
.|.|.+.++. .+.|+||.+. . |-||.+. +.. -.+.|..|.....|+.+- +..
T Consensus 164 DD~Iaiks~~~ni~v~n~~~~--------~------ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~ 229 (326)
T PF00295_consen 164 DDCIAIKSGSGNILVENCTCS--------G------GHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGG 229 (326)
T ss_dssp SESEEESSEECEEEEESEEEE--------S------SSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTS
T ss_pred cCcccccccccceEEEeEEEe--------c------cccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccc
Confidence 9999999988 9999999997 1 1224433 322 255666677777787663 334
Q ss_pred eEEEEEEEeccc
Q 013493 238 NIVTRVHCYNKA 249 (442)
Q Consensus 238 ~~~~gvh~~n~~ 249 (442)
-.+++|+|-|..
T Consensus 230 G~v~nI~f~ni~ 241 (326)
T PF00295_consen 230 GYVSNITFENIT 241 (326)
T ss_dssp EEEEEEEEEEEE
T ss_pred eEEeceEEEEEE
Confidence 568888887764
No 27
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=89.74 E-value=17 Score=37.93 Aligned_cols=88 Identities=22% Similarity=0.324 Sum_probs=56.9
Q ss_pred EEeeeEEeeeccccEEEee---eeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCC--Cc------eeeEEEEE---e
Q 013493 161 RINNCFFLHFTTQGILVQR---GHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN--DN------AITDVTIF---S 226 (442)
Q Consensus 161 ~I~Nc~~~~fNTDGIhI~~---S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gn--d~------~itDv~i~---~ 226 (442)
.|.||.|.++--|.|.-.- -.++.|++-.|.+-.-..| +-+-|.||-|.|+ || +|.+.++. |
T Consensus 180 ritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctng----kinwgigiglagstydn~ype~q~vknfvvanitg 255 (464)
T PRK10123 180 NITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNG----KINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITG 255 (464)
T ss_pred eeeccccccccCceEEEEEEecccceeeehheheeecccCC----cccceeeeeeccccccCCCchhhhhhhEEEEeccC
Confidence 3788888888777776543 3567777777776554444 2346899999965 55 55555543 1
Q ss_pred ---eeEeEEEccceeEEEEEEEecccccc
Q 013493 227 ---AAIGVLLRGQANIVTRVHCYNKATAF 252 (442)
Q Consensus 227 ---a~~Gv~~~gq~~~~~gvh~~n~~t~~ 252 (442)
...=-+-+|.-+++++|+.-|..--|
T Consensus 256 s~crqlvhvengkhfvirnvkaknitpdf 284 (464)
T PRK10123 256 SDCRQLIHVENGKHFVIRNIKAKNITPDF 284 (464)
T ss_pred cChhheEEecCCcEEEEEeeeccccCCCc
Confidence 11112237888999999998876544
No 28
>PLN03010 polygalacturonase
Probab=89.28 E-value=3.7 Score=43.74 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=92.4
Q ss_pred EEEecCCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecc---eEecceeEeccccEEEeeeEEeeeccc
Q 013493 97 IELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSG---FRGGGIFVIDSARIRINNCFFLHFTTQ 173 (442)
Q Consensus 97 I~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n---~~~~GIt~~NSq~~~I~Nc~~~~fNTD 173 (442)
+.|.....+.+++ +...-...|.-. -..|..++++++.++.. ..-.||.+-.|+.++|.+|.+ .-.+|
T Consensus 160 l~~~~~~nv~v~g---itl~nsp~~~i~-----i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I-~~gDD 230 (409)
T PLN03010 160 LHISKCDNLTING---ITSIDSPKNHIS-----IKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTI-QTGDD 230 (409)
T ss_pred EEEEeecCeEEee---eEEEcCCceEEE-----EeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEE-ecCCC
Confidence 6666666655543 111222233211 13577788888888762 345788888999999999966 44799
Q ss_pred cEEEeee-eeEEEeeeeeeeccccCCCCCCcCcceEEEEec--CCC---ceeeEEEE-----EeeeEeEEE---ccceeE
Q 013493 174 GILVQRG-HETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA--SND---NAITDVTI-----FSAAIGVLL---RGQANI 239 (442)
Q Consensus 174 GIhI~~S-~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~--gnd---~~itDv~i-----~~a~~Gv~~---~gq~~~ 239 (442)
.|.+..+ +.+.|++...+ + |-||.+. |.. ..|.|+.| ....-|+.+ .|..-.
T Consensus 231 cIaiksgs~ni~I~~~~C~--------~------gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~ 296 (409)
T PLN03010 231 CIAINSGSSNINITQINCG--------P------GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGY 296 (409)
T ss_pred eEEecCCCCcEEEEEEEeE--------C------cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEE
Confidence 9999886 47888877765 1 2255555 222 23555544 555555554 133345
Q ss_pred EEEEEEeccccccceeeEEEeecccceeeeeeeeecccceeeeCCeEEEEEc
Q 013493 240 VTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTN 291 (442)
Q Consensus 240 ~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~~~iv~~dp~~~~i~~ 291 (442)
+++|++-|..--==... =.|+-||.+-..--.++|..+.|++
T Consensus 297 v~nItf~nI~m~~v~~p----------I~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 297 ARNISFENITLINTKNP----------IIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred EEEeEEEeEEEecCCcc----------EEEEeeccCCCCCCCCCCCceEEEe
Confidence 66666666531110111 2345567664433345566666664
No 29
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=87.85 E-value=40 Score=36.07 Aligned_cols=108 Identities=14% Similarity=0.204 Sum_probs=65.9
Q ss_pred eeeeeeEEEecceEecceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecC
Q 013493 135 DITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLAS 214 (442)
Q Consensus 135 ~iT~rnl~~D~n~~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~g 214 (442)
.+||.|+.|+..-.-+|+-+...-.+-|.+|.|.+|+-.=+.. .-...|+.|.+- .|-.||.-.|
T Consensus 122 ~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~--~~~~~VrGC~F~-------------~C~~gi~~~~ 186 (386)
T PF01696_consen 122 GVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLES--WAGGEVRGCTFY-------------GCWKGIVSRG 186 (386)
T ss_pred eeEEEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEE--cCCcEEeeeEEE-------------EEEEEeecCC
Confidence 3578888888876677777777777889999999985444333 344555666553 1344554443
Q ss_pred C-CceeeEEEEEeeeEeEEEccceeEEEEEEEeccc--cccceeeEE
Q 013493 215 N-DNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKA--TAFGGIGIL 258 (442)
Q Consensus 215 n-d~~itDv~i~~a~~Gv~~~gq~~~~~gvh~~n~~--t~~gg~gi~ 258 (442)
. +-.|.-=+|-==.+||+..|.+. +++--+.|+. --++|.|.+
T Consensus 187 ~~~lsVk~C~FekC~igi~s~G~~~-i~hn~~~ec~Cf~l~~g~g~i 232 (386)
T PF01696_consen 187 KSKLSVKKCVFEKCVIGIVSEGPAR-IRHNCASECGCFVLMKGTGSI 232 (386)
T ss_pred cceEEeeheeeeheEEEEEecCCeE-EecceecccceEEEEcccEEE
Confidence 2 33566666666788997766554 5544444442 223555543
No 30
>PLN02480 Probable pectinesterase
Probab=86.79 E-value=23 Score=37.07 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=33.6
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
++||..| =.-+|+|+++|-..... ..+|+|.+|+|. .+|..+..+.++++
T Consensus 53 a~~G~g~-f~TIQ~AIdaap~~~~~-----------~~~I~Ik~GvY~--E~V~I~~~kp~ItL 102 (343)
T PLN02480 53 DINGKGD-FTSVQSAIDAVPVGNSE-----------WIIVHLRKGVYR--EKVHIPENKPFIFM 102 (343)
T ss_pred CCCCCCC-cccHHHHHhhCccCCCc-----------eEEEEEcCcEEE--EEEEECCCCceEEE
Confidence 3456655 67899999887533211 257999999996 57887744555654
No 31
>PLN02773 pectinesterase
Probab=86.26 E-value=44 Score=34.68 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=37.8
Q ss_pred CeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 5 GRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 5 ~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.+++-| ++||..| =.-+|+|++++-..... ..+|+|.+|+|. ..|.++..+.+|++
T Consensus 4 ~~~i~V-----a~dGsGd-f~TIq~Aida~P~~~~~-----------~~~I~Ik~G~Y~--E~V~I~~~k~~itl 59 (317)
T PLN02773 4 RRVLRV-----AQDGSGD-YCTVQDAIDAVPLCNRC-----------RTVIRVAPGVYR--QPVYVPKTKNLITL 59 (317)
T ss_pred ceEEEE-----CCCCCCC-ccCHHHHHhhchhcCCc-----------eEEEEEeCceEE--EEEEECcCCccEEE
Confidence 445666 3466666 56799999887543221 267999999996 56888754566764
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=85.54 E-value=60 Score=35.49 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=57.3
Q ss_pred eEEEeecccceeeeeeeeeccc---ceeeeCCeEEEEEceEEeecceeEeeeccceeeeeEEeeeeccCCCCCCccEEEe
Q 013493 256 GILVKLADAALTRIDNCYLDYT---GIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKL 332 (442)
Q Consensus 256 gi~~~~~~~~~~ri~ncyld~~---~iv~~dp~~~~i~~~~flgd~~i~l~~~~~~~~g~~i~~n~f~g~~~~~~~iv~l 332 (442)
+|++ .+...-+|.+|-|... +|-+|-.- ..|.++...|++-.=+++. ...++.|.+|...+..++++.|++.
T Consensus 137 gI~v--~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~~~~I~lw--~S~g~~V~~N~I~g~RD~gi~i~r~ 211 (455)
T TIGR03808 137 LIHC--QGGRDVRITDCEITGSGGNGIWLETVS-GDISGNTITQIAVTAIVSF--DALGLIVARNTIIGANDNGIEILRS 211 (455)
T ss_pred EEEE--ccCCceEEEeeEEEcCCcceEEEEcCc-ceEecceEeccccceEEEe--ccCCCEEECCEEEccCCCCeEEEEe
Confidence 5565 5778889999999766 48888775 8888888888866654443 3568899999999999999999977
No 33
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=84.39 E-value=51 Score=36.59 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
+||..| -.-||+|+++|....+ . ...+|+|.+|+|. ..|..+..+.++++
T Consensus 231 ~dGsG~-f~TIq~AI~a~~~~~~-~---------~r~vI~Ik~GvY~--E~V~I~~~k~nItl 280 (529)
T PLN02170 231 ADGSGT-HKTIGEALLSTSLESG-G---------GRTVIYLKAGTYH--ENLNIPTKQKNVML 280 (529)
T ss_pred CCCCCc-hhhHHHHHHhcccccC-C---------ceEEEEEeCCeeE--EEEecCCCCceEEE
Confidence 466666 5679999986432111 1 1368999999996 46887755667764
No 34
>PLN02176 putative pectinesterase
Probab=79.57 E-value=35 Score=35.77 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=35.3
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
++||..| =.-||+|++++-..... ..+|+|.+|+|. ..|..+..+.++++
T Consensus 44 a~dGsGd-f~TIq~AIdavP~~~~~-----------~~~I~Ik~GvY~--EkV~Ip~~k~~vtl 93 (340)
T PLN02176 44 NPNDARY-FKTVQSAIDSIPLQNQN-----------WIRILIQNGIYR--EKVTIPKEKGYIYM 93 (340)
T ss_pred CCCCCCC-ccCHHHHHhhchhcCCc-----------eEEEEECCcEEE--EEEEECCCCccEEE
Confidence 4566666 67899999876443211 257999999996 46888755677764
No 35
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=77.47 E-value=20 Score=34.22 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=76.4
Q ss_pred eEEEc-ccee-EEEEEEEecc-----------ccccceeeEEEeecccceeeeeeeeeccc----------ce--eeeCC
Q 013493 230 GVLLR-GQAN-IVTRVHCYNK-----------ATAFGGIGILVKLADAALTRIDNCYLDYT----------GI--VLEDP 284 (442)
Q Consensus 230 Gv~~~-gq~~-~~~gvh~~n~-----------~t~~gg~gi~~~~~~~~~~ri~ncyld~~----------~i--v~~dp 284 (442)
|+.+. ++.| +++++++.+. ...-++-+|-+. +.+-=|||.|-+-.. ++ +-+++
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~--~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s 115 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID--NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGS 115 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE--STEEEEEES-EEEETTS-GGGSSSSSSEEEESST
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE--ecccEEEeccEEeccccccccccCCceEEEEeCC
Confidence 44443 4444 6788888882 222355555555 567788898888766 22 23578
Q ss_pred eEEEEEceEEeecceeEeeec------cceeeeeEEeeeeccCCCCCCccEEEecCCcceeeEEEEecccccceeeeeee
Q 013493 285 VQVHVTNGFFLGDANIVLKSI------KGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTA 358 (442)
Q Consensus 285 ~~~~i~~~~flgd~~i~l~~~------~~~~~g~~i~~n~f~g~~~~~~~iv~l~g~f~~i~~v~v~~n~~~gm~~~~t~ 358 (442)
-.++||++.|-+--.-.|.-- ... .-+++.+|.|...-.+ .|.++- |.++-+...+.+ ..-++|..+. -
T Consensus 116 ~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~~~R-~P~~r~-G~~Hv~NN~~~~-~~~y~i~~~~-~ 190 (200)
T PF00544_consen 116 DNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANTNSR-NPRVRF-GYVHVYNNYYYN-WSGYAIGARS-G 190 (200)
T ss_dssp EEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEEEE--TTEECS-CEEEEES-EEEE-ECSESEEEET-T
T ss_pred ceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECchhhC-CCcccc-cEEEEEEeeeEC-CCCEEEEccC-C
Confidence 899999999987533333221 112 5789999999876344 485542 777777777644 4566777654 5
Q ss_pred eeeeeccC
Q 013493 359 GKLSVAGN 366 (442)
Q Consensus 359 ~~~~~~~~ 366 (442)
|+..+++|
T Consensus 191 a~v~~E~N 198 (200)
T PF00544_consen 191 AQVLVENN 198 (200)
T ss_dssp EEEEEES-
T ss_pred eEEEEECc
Confidence 56666665
No 36
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=77.36 E-value=1.1e+02 Score=33.24 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=33.8
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.+||..| =.-||+|+++|....... -.+|+|-+|+|. ..|..+..+.+|++
T Consensus 87 a~dGsGd-f~TIQaAIdAa~~~~~~~----------r~~I~Ik~GvY~--EkV~Ip~~kp~ItL 137 (422)
T PRK10531 87 AGTQGVT-HTTVQAAVDAAIAKRTNK----------RQYIAVMPGTYQ--GTVYVPAAAPPITL 137 (422)
T ss_pred CCCCCCC-ccCHHHHHhhccccCCCc----------eEEEEEeCceeE--EEEEeCCCCceEEE
Confidence 4566655 567999998765321111 267999999996 46877755666764
No 37
>PLN02432 putative pectinesterase
Probab=76.50 E-value=67 Score=33.03 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.+||..| =.-||+|++++-..... ..+|+|.+|+|. ..|.+|..+.+|++
T Consensus 16 a~~Gsg~-f~TIq~Aida~p~~~~~-----------~~~I~I~~G~Y~--E~V~ip~~k~~itl 65 (293)
T PLN02432 16 DQSGKGD-FRKIQDAIDAVPSNNSQ-----------LVFIWVKPGIYR--EKVVVPADKPFITL 65 (293)
T ss_pred CCCCCCC-ccCHHHHHhhccccCCc-----------eEEEEEeCceeE--EEEEEeccCceEEE
Confidence 3455555 56799999876543211 268999999995 57888755666654
No 38
>PLN02682 pectinesterase family protein
Probab=75.71 E-value=95 Score=33.04 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 19 GANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 19 G~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
|..| =.-+|+|++++-.... ...+|+|-+|+|. ..|..+..+.++++
T Consensus 78 gsGd-f~TIQ~AIdavP~~~~-----------~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl 124 (369)
T PLN02682 78 AAGD-FTTIQAAIDSLPVINL-----------VRVVIKVNAGTYR--EKVNIPPLKAYITL 124 (369)
T ss_pred CCCC-ccCHHHHHhhccccCC-----------ceEEEEEeCceee--EEEEEeccCceEEE
Confidence 4444 5679999987643221 1268999999996 56888756667764
No 39
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=74.66 E-value=1e+02 Score=34.59 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
+||..| =.-||+|++++-.....+ .+..+|||.+|+|. ..|..+..+.++++ .+|
T Consensus 256 ~dGsG~-f~TIq~Av~a~p~~~~~~--------~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g 311 (566)
T PLN02713 256 QNGTGN-FTTINDAVAAAPNNTDGS--------NGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDG 311 (566)
T ss_pred CCCCCC-CCCHHHHHHhhhcccCCC--------CceEEEEEcCcEEE--EEEEecCCCceEEEEecC
Confidence 455555 567899998764431111 12368999999996 46888755667764 444
No 40
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=74.17 E-value=96 Score=34.44 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.||..| =.-||+|++++-.... ...+|+|.+|+|. ..|..+..+.+|++
T Consensus 212 ~dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~~i~l 260 (520)
T PLN02201 212 ADGTGN-FTTIMDAVLAAPDYST-----------KRYVIYIKKGVYL--ENVEIKKKKWNIMM 260 (520)
T ss_pred CCCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEeCceeE--EEEEecCCCceEEE
Confidence 355555 5689999987654321 1368999999996 46888855667764
No 41
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=73.86 E-value=1.5e+02 Score=32.92 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 18 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 18 dG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
||..| =.-||+|+++|-..... ..+|+|.+|+|. ..|..+..+.++++
T Consensus 204 dGsG~-f~TIq~AI~a~P~~~~~-----------r~vI~Ik~GvY~--E~V~I~~~k~nItl 251 (509)
T PLN02488 204 DGSGK-YNTVNAAIAAAPEHSRK-----------RFVIYIKTGVYD--EIVRIGSTKPNLTL 251 (509)
T ss_pred CCCCC-ccCHHHHHHhchhcCCC-----------cEEEEEeCCeeE--EEEEecCCCccEEE
Confidence 45444 45789999877543211 268999999996 46887755677764
No 42
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=72.58 E-value=77 Score=35.60 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=33.8
Q ss_pred CCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 18 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 18 dG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
||..| =+-||+|+++|-.... +..+|||.+|+|. ..|..+..+.++++ .+|
T Consensus 282 dGsG~-f~TI~~Av~a~p~~~~-----------~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg 333 (587)
T PLN02313 282 DGSGD-FTTVAAAVAAAPEKSN-----------KRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDG 333 (587)
T ss_pred CCCCC-CccHHHHHHhccccCC-----------ceEEEEEeCceeE--EEEEeCCCCCeEEEEecC
Confidence 45444 5678999987654321 1368999999996 46777755667764 444
No 43
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=71.28 E-value=1.7e+02 Score=32.60 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
+||..| =.-||+|++++-.... ...+|+|-+|+|. ..|..+..+.++++
T Consensus 224 ~dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~~itl 272 (530)
T PLN02933 224 IDGTGN-FTTINEAVSAAPNSSE-----------TRFIIYIKGGEYF--ENVELPKKKTMIMF 272 (530)
T ss_pred CCCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEcCceEE--EEEEecCCCceEEE
Confidence 455555 5679999987654321 1268999999997 46888855667764
No 44
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=71.01 E-value=1.3e+02 Score=30.81 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=29.4
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.||..| =.-||+|++++-..... ..+|+|.+|+|. ..|..+..+.++.+
T Consensus 6 ~dG~gd-f~TIq~Aida~p~~~~~-----------~~~I~I~~G~Y~--E~V~i~~~k~~v~l 54 (298)
T PF01095_consen 6 QDGSGD-FTTIQAAIDAAPDNNTS-----------RYTIFIKPGTYR--EKVTIPRSKPNVTL 54 (298)
T ss_dssp TTSTSS-BSSHHHHHHHS-SSSSS------------EEEEE-SEEEE----EEE-STSTTEEE
T ss_pred CCCCCC-ccCHHHHHHhchhcCCc-----------eEEEEEeCeeEc--cccEeccccceEEE
Confidence 345544 46789999886543221 257999999996 46888855667754
No 45
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=70.09 E-value=13 Score=35.54 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=35.7
Q ss_pred EecceeEeccccEEEeeeEEeee-------cccc-EEEee-eeeEEEeeeeeeeccc
Q 013493 148 RGGGIFVIDSARIRINNCFFLHF-------TTQG-ILVQR-GHETFISSCFLGQRST 195 (442)
Q Consensus 148 ~~~GIt~~NSq~~~I~Nc~~~~f-------NTDG-IhI~~-S~~V~I~nS~Igq~~t 195 (442)
...+|.+.++..+.||.|.|..- ..|| +.+.. ++.|+|++|.|.+|..
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k 130 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNK 130 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEE
T ss_pred CCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhcccccc
Confidence 45678888999999999998777 2455 67764 8999999999998864
No 46
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=69.66 E-value=1.4e+02 Score=33.21 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
.||..| =+-||+|++++-..... ..+|+|.+|+|. ..|..+..+.++++ .+|
T Consensus 236 ~dGsG~-f~TIq~Ai~a~p~~~~~-----------r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g 288 (541)
T PLN02416 236 ADGTGN-FSTITDAINFAPNNSND-----------RIIIYVREGVYE--ENVEIPIYKTNIVLIGDG 288 (541)
T ss_pred CCCCCC-ccCHHHHHHhhhhcCCc-----------eEEEEEeCceeE--EEEecCCCCccEEEEecC
Confidence 345555 56788899876543211 268999999996 46887755667764 444
No 47
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=69.25 E-value=1.1e+02 Score=34.46 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 18 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 18 dG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
||..| =.-||+|++++-.... ...+|+|.+|+|. ..|..+..+.++++
T Consensus 292 dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~~i~l 339 (596)
T PLN02745 292 DGSGN-FTTISDALAAMPAKYE-----------GRYVIYVKQGIYD--ETVTVDKKMVNVTM 339 (596)
T ss_pred CCCCC-cccHHHHHHhccccCC-----------ceEEEEEeCCeeE--EEEEEcCCCceEEE
Confidence 45444 5678999987644321 1368999999997 45877755667764
No 48
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=68.70 E-value=1.7e+02 Score=31.35 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=84.8
Q ss_pred EecceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEEEEe
Q 013493 148 RGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFS 226 (442)
Q Consensus 148 ~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~i~~ 226 (442)
++.||.+-|++...|-...+ .+..|||-+..|+.-.|++..+. .+-.|...+ .+|+.++|=....
T Consensus 149 rGnGI~vyNa~~a~V~~ndi-sy~rDgIy~~~S~~~~~~gnr~~-------------~~RygvHyM~t~~s~i~dn~s~~ 214 (408)
T COG3420 149 RGNGIYVYNAPGALVVGNDI-SYGRDGIYSDTSQHNVFKGNRFR-------------DLRYGVHYMYTNDSRISDNSSRD 214 (408)
T ss_pred ccCceEEEcCCCcEEEcCcc-ccccceEEEcccccceecccchh-------------heeeeEEEEeccCcEeecccccC
Confidence 67788888887766544332 34689999988887777666554 123455555 7888888888887
Q ss_pred eeEeEEE--ccceeEEEEEEEeccccccceeeEEEeeccc---ceeeeee-----eeecccceeeeCCeEEEEEceEEee
Q 013493 227 AAIGVLL--RGQANIVTRVHCYNKATAFGGIGILVKLADA---ALTRIDN-----CYLDYTGIVLEDPVQVHVTNGFFLG 296 (442)
Q Consensus 227 a~~Gv~~--~gq~~~~~gvh~~n~~t~~gg~gi~~~~~~~---~~~ri~n-----cyld~~~iv~~dp~~~~i~~~~flg 296 (442)
-..|..+ +... ++++ |+..+----||++....+ +-.|+.+ |-+=|+ .--..|+++-|-|
T Consensus 215 N~vG~ALMys~~l-~V~~----nrS~Gnrd~Gillnya~~s~i~~N~v~g~~~Gk~vfiyn------~~~~ki~~n~feg 283 (408)
T COG3420 215 NRVGYALMYSDRL-KVSD----NRSSGNRDHGILLNYANYSRIVGNRVAGNVSGKCVFIYN------ANYNKIRGNSFEG 283 (408)
T ss_pred CcceEEEEEeccE-EEEc----CcccCccccceeeeeeeccceeccEEEecccceEEEEec------cchhhhccceeec
Confidence 7777665 3332 2333 444444456776665221 1122222 333332 2244566666665
Q ss_pred cce-eEeeeccceeeeeEEeeeeccCC
Q 013493 297 DAN-IVLKSIKGRISGLTIVENMFNGS 322 (442)
Q Consensus 297 d~~-i~l~~~~~~~~g~~i~~n~f~g~ 322 (442)
.+- |-|.+ -..|..|.+|-|-|+
T Consensus 284 ~~iGIhlta---gsegn~~~gNsFigN 307 (408)
T COG3420 284 CAIGIHLTA---GSEGNEIIGNSFIGN 307 (408)
T ss_pred ceEEEEEec---cccCcEEeccccccc
Confidence 542 22222 266777777777776
No 49
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=68.51 E-value=79 Score=28.85 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=52.7
Q ss_pred cccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeEEEEE-eeeE-eEEEcc--ceeEEEEEEEec
Q 013493 172 TQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIF-SAAI-GVLLRG--QANIVTRVHCYN 247 (442)
Q Consensus 172 TDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv~i~-~a~~-Gv~~~g--q~~~~~gvh~~n 247 (442)
-+||+...++.+.|+++.+.... ..||.+... ++.-+. +... ++.+.+ ...+..++++..
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~------------~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSG------------GDGIYFNTG----TDYRIIGSTHVSGIFIDNGSNNVIVNNCIFNG 175 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-S------------S-SEEEECC----EECEEECCEEEEEEEEESCEEEEEEECEEEES
T ss_pred ceEEEEEeCCeEEEEeEEEEccC------------ccEEEEEcc----ccCcEeecccceeeeeccceeEEEECCccccC
Confidence 37899999999999999997321 334444411 111111 2233 566655 223335666655
Q ss_pred cccccceeeEEEeecccceeeeeeeeecc---cceeeeCCeEEEEEceEE
Q 013493 248 KATAFGGIGILVKLADAALTRIDNCYLDY---TGIVLEDPVQVHVTNGFF 294 (442)
Q Consensus 248 ~~t~~gg~gi~~~~~~~~~~ri~ncyld~---~~iv~~dp~~~~i~~~~f 294 (442)
...+ +.+. ...-.|.||+.+. ++|.+++-..++|++.-|
T Consensus 176 ~~~g-----~~~~---~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i 217 (225)
T PF12708_consen 176 GDNG-----IILG---NNNITISNNTFEGNCGNGINIEGGSNIIISNNTI 217 (225)
T ss_dssp SSCS-----EECE---EEEEEEECEEEESSSSESEEEEECSEEEEEEEEE
T ss_pred CCce-----eEee---cceEEEEeEEECCccceeEEEECCeEEEEEeEEE
Confidence 5443 3322 1344567777654 566666555555555433
No 50
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=66.92 E-value=1.9e+02 Score=32.25 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=35.1
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
+||..| =.-||+|++++-....+. .+-.+|||.+|+|. ..|..+..+.++++ .+|
T Consensus 229 ~dGsG~-f~TI~~Av~a~p~~~~~~--------~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g 284 (538)
T PLN03043 229 PYGTDN-FTTITDAIAAAPNNSKPE--------DGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDG 284 (538)
T ss_pred CCCCCC-CcCHHHHHHhccccCCCC--------cceEEEEEcCeeeE--EEEEeCCCCCcEEEEecC
Confidence 355555 567899997764322110 12368999999996 46887756677865 444
No 51
>PLN02916 pectinesterase family protein
Probab=66.90 E-value=2.1e+02 Score=31.74 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=33.6
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
+||..| =+-||+|++++-...... ....+|+|.+|+|. ..|..+..+.++++
T Consensus 193 ~dGsG~-f~TIq~AI~a~P~~~~~~--------~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l 244 (502)
T PLN02916 193 RDGSGT-HRTINQALAALSRMGKSR--------TNRVIIYVKAGVYN--EKVEIDRHMKNVMF 244 (502)
T ss_pred CCCCCC-ccCHHHHHHhcccccCCC--------CceEEEEEeCceee--EEEEecCCCceEEE
Confidence 455555 557999998765421111 12368999999996 46877755667764
No 52
>PLN02634 probable pectinesterase
Probab=64.18 E-value=2e+02 Score=30.55 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
+||..| =.-+|+|++++-.... ...+|+|-+|+|. ..|..+..+.++++
T Consensus 62 ~dGsGd-f~TIQaAIda~P~~~~-----------~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL 110 (359)
T PLN02634 62 ANGHGD-FRSVQDAVDSVPKNNT-----------MSVTIKINAGFYR--EKVVVPATKPYITF 110 (359)
T ss_pred CCCCCC-ccCHHHHHhhCcccCC-----------ccEEEEEeCceEE--EEEEEcCCCCeEEE
Confidence 456666 5679999987643221 1368999999996 46888755667754
No 53
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=63.48 E-value=2.4e+02 Score=31.50 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=34.9
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
.||..| =.-+|+|+++|-...... +..+|+|-+|+|. ..|..|..+.++++ .+|
T Consensus 229 ~dGsG~-f~TIq~Ai~a~p~~~~~~---------~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g 283 (539)
T PLN02995 229 KDGSGH-FNTVQAAIDVAGRRKVTS---------GRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDG 283 (539)
T ss_pred CCCCCC-ccCHHHHHHhcccccCCC---------ceEEEEEeCCEeE--EEEEecCCCCcEEEEEcC
Confidence 355544 567899998764311111 2368999999996 46888766777864 444
No 54
>PLN02304 probable pectinesterase
Probab=62.81 E-value=2.2e+02 Score=30.52 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=34.1
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
++||..| =.-+|+|++++-..... ..+|+|-+|+|. ..|..+..+.++++
T Consensus 80 a~dGsGd-f~TIQ~AIdavP~~~~~-----------r~vI~Ik~GvY~--EkV~Ip~~K~~Itl 129 (379)
T PLN02304 80 DPNGCCN-FTTVQSAVDAVGNFSQK-----------RNVIWINSGIYY--EKVTVPKTKPNITF 129 (379)
T ss_pred CCCCCCC-ccCHHHHHhhCcccCCC-----------cEEEEEeCeEeE--EEEEECCCCCcEEE
Confidence 4566666 56799999876443211 257999999996 46777755667764
No 55
>PLN02497 probable pectinesterase
Probab=62.16 E-value=1.6e+02 Score=30.91 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
++||..| =.-+|+|++++-..... ..+|+|-+|+|. ..|..+..+.++++
T Consensus 37 a~dGsGd-f~TIq~AIdavP~~~~~-----------~~~I~Ik~G~Y~--EkV~Ip~~k~~itl 86 (331)
T PLN02497 37 DQSGHGN-FTTIQSAIDSVPSNNKH-----------WFCINVKAGLYR--EKVKIPYDKPFIVL 86 (331)
T ss_pred CCCCCCC-ccCHHHHHhhccccCCc-----------eEEEEEeCcEEE--EEEEecCCCCcEEE
Confidence 4466666 66899999876543211 257999999996 46887755666754
No 56
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=62.02 E-value=2e+02 Score=32.20 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=34.8
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
.||..| =+-||+|++++-..... ..+|+|-+|+|. ..|..+..+.++++ .+|
T Consensus 242 ~dGsG~-f~TIq~Ai~a~P~~~~~-----------r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g 294 (548)
T PLN02301 242 KDGSGK-YKTVKEAVASAPDNSKT-----------RYVIYVKKGTYK--ENVEIGKKKKNLMLVGDG 294 (548)
T ss_pred CCCCCC-cccHHHHHHhhhhcCCc-----------eEEEEEeCceee--EEEEecCCCceEEEEecC
Confidence 355555 56799999877543211 258999999996 46888755667764 444
No 57
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=61.91 E-value=2.7e+02 Score=31.23 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=34.4
Q ss_pred CCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 18 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 18 dG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
||..| =+-||+|++++-...+. +-.+|+|.+|+|. ..|..+..+.++++ .+|
T Consensus 248 dGsg~-f~TIq~Av~a~p~~~~~----------~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g 300 (553)
T PLN02708 248 DGNCC-YKTVQEAVNAAPDNNGD----------RKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDG 300 (553)
T ss_pred CCCCC-ccCHHHHHHhhhhccCC----------ccEEEEEeCceEE--eeeeecCCCccEEEEecC
Confidence 45555 56789999887542111 1268999999997 46887755677764 444
No 58
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=60.64 E-value=2.8e+02 Score=31.09 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 18 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 18 dG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
||..| =+-||+|++++-.... ...+|+|.+|+|. ..|..+..+.++++
T Consensus 265 dGsg~-f~tI~~Av~a~p~~~~-----------~~~vI~ik~GvY~--E~V~i~~~k~~i~~ 312 (565)
T PLN02468 265 DGSGK-YKTISEALKDVPEKSE-----------KRTIIYVKKGVYF--ENVRVEKKKWNVVM 312 (565)
T ss_pred CCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEeCCceE--EEEEecCCCCeEEE
Confidence 45555 3678889887654321 2368999999996 46887744567764
No 59
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=59.54 E-value=2.8e+02 Score=30.96 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.||..| =.-||+|++++-.... +..+|+|.+|+|. ..|..+..+.++++
T Consensus 238 ~dGsG~-f~TIq~Av~a~p~~~~-----------~r~vI~Vk~GvY~--E~V~I~~~k~~i~l 286 (537)
T PLN02506 238 LDGSGH-YRTITEAINEAPNHSN-----------RRYIIYVKKGVYK--ENIDMKKKKTNIML 286 (537)
T ss_pred CCCCCC-ccCHHHHHHhchhcCC-----------CcEEEEEeCCeee--EEEeccCCCceEEE
Confidence 355555 5578999987654321 2368999999996 45777755667764
No 60
>PLN02197 pectinesterase
Probab=56.98 E-value=3.3e+02 Score=30.82 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=33.4
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.||..| =.-||+|++++-.... ...+|+|-+|+|. ..|..+..+.++++
T Consensus 281 ~dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~ni~l 329 (588)
T PLN02197 281 KDGSGQ-FKTISQAVMACPDKNP-----------GRCIIHIKAGIYN--EQVTIPKKKNNIFM 329 (588)
T ss_pred CCCCCC-cCCHHHHHHhccccCC-----------ceEEEEEeCceEE--EEEEccCCCceEEE
Confidence 345555 5679999987654321 1257999999996 46887755667764
No 61
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=56.73 E-value=3.6e+02 Score=31.06 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=32.9
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.||..| =.-||+|++++-.... ...+|+|-+|+|. ..|..+..+.++++
T Consensus 256 ~dGsG~-f~TIq~Av~a~P~~~~-----------~r~vI~Ik~GvY~--E~V~I~~~k~~i~l 304 (670)
T PLN02217 256 QDGSGQ-YKTINEALNFVPKKKN-----------TTFVVHIKAGIYK--EYVQVNRSMTHLVF 304 (670)
T ss_pred CCCCCC-ccCHHHHHHhccccCC-----------ceEEEEEeCCceE--EEEEEcCCCCcEEE
Confidence 345555 5679999987654321 1368999999996 46888744667754
No 62
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=54.93 E-value=18 Score=25.83 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=28.1
Q ss_pred ceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeee
Q 013493 151 GIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLG 191 (442)
Q Consensus 151 GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Ig 191 (442)
||.+-+|..-.|.++.+. -+.|||++..|+.-.|.+..+.
T Consensus 1 GI~l~~s~~~~i~~N~i~-~~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTAS-NNSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEe-CCCCEEEEEeCCCCEeECCEEE
Confidence 566666766667766653 3666888888888888777665
No 63
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=53.90 E-value=3.7e+02 Score=30.30 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE-ecc
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV-QGG 82 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i-~~G 82 (442)
+||..| =.-||+|++++-.... ...+|+|.+|+|. ..|..+..+.++++ .+|
T Consensus 265 ~dGsG~-f~TIq~Av~a~p~~~~-----------~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g 317 (572)
T PLN02990 265 QDGSGQ-YKTINEALNAVPKANQ-----------KPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDG 317 (572)
T ss_pred CCCCCC-CcCHHHHHhhCcccCC-----------ceEEEEEeCceeE--EEEEecCCCCcEEEEecC
Confidence 355555 5569999987743221 1268999999997 46888755667764 444
No 64
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=51.95 E-value=4e+02 Score=30.13 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=33.6
Q ss_pred CCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 17 PTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 17 pdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
.||..| =+-||+|++++-.... ...+|+|.+|+|.= +.|..+..+.++++
T Consensus 278 ~dGsG~-f~TIq~Ai~a~P~~~~-----------~r~vI~Ik~G~Y~E-~~v~i~~~k~ni~l 327 (587)
T PLN02484 278 KDGNGT-FKTISEAIKKAPEHSS-----------RRTIIYVKAGRYEE-NNLKVGRKKTNLMF 327 (587)
T ss_pred CCCCCC-cccHHHHHHhccccCC-----------CcEEEEEeCCEEEE-EEEEECCCCceEEE
Confidence 455555 5679999987654321 23689999999963 23777755667764
No 65
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=49.02 E-value=55 Score=36.46 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=56.0
Q ss_pred EEEEEceEE-eecceeEeeecccee--------eeeEEeeeeccCCCCCCccEE--EecCCccee--eEEEEecccccce
Q 013493 286 QVHVTNGFF-LGDANIVLKSIKGRI--------SGLTIVENMFNGSPARNVPII--KLDGEFSNI--DQVVIERNNVNGM 352 (442)
Q Consensus 286 ~~~i~~~~f-lgd~~i~l~~~~~~~--------~g~~i~~n~f~g~~~~~~~iv--~l~g~f~~i--~~v~v~~n~~~gm 352 (442)
-+-|.+++| -||-.|-+||=.+.. +.+.|-+|.|+.. .+.-.+ +-.|-|++| +..++++ .-+|+
T Consensus 297 NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g--hG~~v~Gse~~ggv~ni~ved~~~~~-~d~GL 373 (542)
T COG5434 297 NVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG--HGGLVLGSEMGGGVQNITVEDCVMDN-TDRGL 373 (542)
T ss_pred eEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc--ccceEeeeecCCceeEEEEEeeeecc-Cccee
Confidence 334444433 299999999966555 8899999999933 333333 455889887 6666666 56889
Q ss_pred eeeeeeeeeeeccCCeEEEEecccc
Q 013493 353 SLKSTAGKLSVAGNGTKWVADFSPI 377 (442)
Q Consensus 353 ~~~~t~~~~~~~~~gt~w~~df~~~ 377 (442)
.+|+.-+|. |+.=.+=|..+
T Consensus 374 Rikt~~~~g-----G~v~nI~~~~~ 393 (542)
T COG5434 374 RIKTNDGRG-----GGVRNIVFEDN 393 (542)
T ss_pred eeeeecccc-----eeEEEEEEecc
Confidence 998887765 55555555443
No 66
>PLN02314 pectinesterase
Probab=47.73 E-value=4.6e+02 Score=29.61 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 18 TGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 18 dG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
||..| =+-||+|++++-.... ...+|+|-+|+|. ..|..+-.+.++++
T Consensus 285 dGsg~-f~TI~~Av~a~p~~~~-----------~r~vI~ik~G~Y~--E~V~i~~~k~~i~l 332 (586)
T PLN02314 285 DGSGD-VKTINEAVASIPKKSK-----------SRFVIYVKEGTYV--ENVLLDKSKWNVMI 332 (586)
T ss_pred CCCCC-ccCHHHHHhhccccCC-----------ceEEEEEcCceEE--EEEEecCCCceEEE
Confidence 44444 4568999987644321 1268999999996 46887745567764
No 67
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=43.92 E-value=3.9e+02 Score=28.83 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=75.5
Q ss_pred EEEeeeEEeeec-cccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeEEEEEeeeEeEEEcccee
Q 013493 160 IRINNCFFLHFT-TQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQAN 238 (442)
Q Consensus 160 ~~I~Nc~~~~fN-TDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv~i~~a~~Gv~~~gq~~ 238 (442)
+.|.||.|..-. --|+-+.....+.+.+|.+- | |.|+.+++.+ +-
T Consensus 123 VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~------g------f~g~cl~~~~----------------------~~ 168 (386)
T PF01696_consen 123 VTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFF------G------FHGTCLESWA----------------------GG 168 (386)
T ss_pred eEEEEEEEecCCccceeEEEecceEEEEeeEEe------c------CcceeEEEcC----------------------Cc
Confidence 456677665554 66888888889999999887 2 5566665542 23
Q ss_pred EEEEEEEeccccccceeeEEEeecccceeeeeeeeecc--cceeeeCCeEEEEEceEEeecceeEeeeccceeeeeEEee
Q 013493 239 IVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDY--TGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVE 316 (442)
Q Consensus 239 ~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncyld~--~~iv~~dp~~~~i~~~~flgd~~i~l~~~~~~~~g~~i~~ 316 (442)
.++|+|||.+-.++= .+|..+-++.+|..|- -+|+.|-|.. |+.+.|+--.=-+|=.-.|+ |.+
T Consensus 169 ~VrGC~F~~C~~gi~-------~~~~~~lsVk~C~FekC~igi~s~G~~~--i~hn~~~ec~Cf~l~~g~g~-----i~~ 234 (386)
T PF01696_consen 169 EVRGCTFYGCWKGIV-------SRGKSKLSVKKCVFEKCVIGIVSEGPAR--IRHNCASECGCFVLMKGTGS-----IKH 234 (386)
T ss_pred EEeeeEEEEEEEEee-------cCCcceEEeeheeeeheEEEEEecCCeE--EecceecccceEEEEcccEE-----Eec
Confidence 488999998875543 3455666777777763 4778888764 55776665544444333444 556
Q ss_pred eeccCC
Q 013493 317 NMFNGS 322 (442)
Q Consensus 317 n~f~g~ 322 (442)
|||-+.
T Consensus 235 N~v~~~ 240 (386)
T PF01696_consen 235 NMVCGP 240 (386)
T ss_pred cEEeCC
Confidence 777655
No 68
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=42.16 E-value=1.1e+02 Score=34.30 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=22.9
Q ss_pred EEEeeeEEeeeccccEEEeeeeeEEEeeeeeeecc
Q 013493 160 IRINNCFFLHFTTQGILVQRGHETFISSCFLGQRS 194 (442)
Q Consensus 160 ~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Igq~~ 194 (442)
..|.+|++ |.|+|.|++-+ +++.|++|.|=++.
T Consensus 382 S~i~dcF~-h~nDD~iKlYh-S~v~v~~~ViWk~~ 414 (582)
T PF03718_consen 382 STIRDCFI-HVNDDAIKLYH-SNVSVSNTVIWKNE 414 (582)
T ss_dssp -EEEEEEE-EESS-SEE--S-TTEEEEEEEEEE-S
T ss_pred CeeeeeEE-EecCchhheee-cCcceeeeEEEecC
Confidence 34678865 88999999987 67999999998544
No 69
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=41.78 E-value=26 Score=30.31 Aligned_cols=15 Identities=40% Similarity=1.057 Sum_probs=10.1
Q ss_pred EEEEecccceecccC
Q 013493 369 KWVADFSPILVFPNR 383 (442)
Q Consensus 369 ~w~~df~~~llfp~~ 383 (442)
.|.++.+|.||||++
T Consensus 100 ~W~V~W~ps~I~P~L 114 (118)
T PF05223_consen 100 DWKVDWDPSLIFPGL 114 (118)
T ss_dssp CEEE---GGGTSTT-
T ss_pred cEEEEeCccCCCCCC
Confidence 399999999999975
No 70
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=41.47 E-value=3.9e+02 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=24.2
Q ss_pred EEEecceEecceeEeccccEEEeeeEEeeeccccEEEeeeeeEEEeeeeee
Q 013493 141 VLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLG 191 (442)
Q Consensus 141 l~~D~n~~~~GIt~~NSq~~~I~Nc~~~~fNTDGIhI~~S~~V~I~nS~Ig 191 (442)
|......+++|+++.|... .---||.|+++ ...|.|++|.
T Consensus 93 I~~~~~~~i~GvtItN~n~----------~~g~Gi~Iess-~~tI~Nntf~ 132 (246)
T PF07602_consen 93 IILANNATISGVTITNPNI----------ARGTGIWIESS-SPTIANNTFT 132 (246)
T ss_pred EEecCCCEEEEEEEEcCCC----------CcceEEEEecC-CcEEEeeEEE
Confidence 4455577778877777611 11246777666 6667766666
No 71
>PHA00672 hypothetical protein
Probab=39.22 E-value=67 Score=29.83 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=32.4
Q ss_pred eEEEecCceEEEeceEEeC---CCCcceEE-ecc---------eEEeCCCCC------CCcceEEEecCC
Q 013493 53 VIIDFQGGNYKISKPIRFP---PGVGNVVV-QGG---------TLRASDTFP------SDRHLIELWAPN 103 (442)
Q Consensus 53 a~V~lPgGtYlIs~pI~f~---pc~gni~i-~~G---------TLkAp~df~------~d~~wI~f~~~n 103 (442)
-+|.+|+|+-|..+-++|. ..+|.+.+ .+| ++.+|+.-+ .|..|+.|...+
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~ii~sG~itV~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt~~h~se 119 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTVLIFSGHATVFIGGEAVELRGYHVIPASAGRKQAFVAHADTDLTMLFPSE 119 (152)
T ss_pred EEEeccCceeeeeeeeEeeEEEEecccEEEEeCCcEEEEecceeeecCCCcccceeeeccceEEEEeccc
Confidence 4699999999998777776 24566663 455 233333211 155798887654
No 72
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=38.28 E-value=2.1e+02 Score=30.16 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=9.1
Q ss_pred eEEEEEceEEee
Q 013493 285 VQVHVTNGFFLG 296 (442)
Q Consensus 285 ~~~~i~~~~flg 296 (442)
=++|+=|+||-+
T Consensus 239 G~vHvyNNYy~~ 250 (345)
T COG3866 239 GMVHVYNNYYEG 250 (345)
T ss_pred eEEEEecccccc
Confidence 367888888874
No 73
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=35.02 E-value=56 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.557 Sum_probs=17.1
Q ss_pred eEEEEecCCCceeeEEEEE-eeeEeEEEccceeEEEEEE
Q 013493 207 GTAIDLASNDNAITDVTIF-SAAIGVLLRGQANIVTRVH 244 (442)
Q Consensus 207 gtgI~l~gnd~~itDv~i~-~a~~Gv~~~gq~~~~~gvh 244 (442)
|+|+.|+|..++|.|++.. ++.-|++..+.-+.+++++
T Consensus 325 GVG~~~DG~~~yvsni~~~d~~g~G~~~~~~~~~ftNit 363 (549)
T PF09251_consen 325 GVGIGMDGKGGYVSNITVQDCAGAGIFIRGTNKVFTNIT 363 (549)
T ss_dssp SESCEEECCS-EEEEEEEES-SSESEEEECCS-EEEEEE
T ss_pred eeeeeecCCCceEeeEEeecccCCceEEeecCCceeeeE
Confidence 4455555444555554444 4444454444444444444
No 74
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=33.83 E-value=1.2e+02 Score=32.05 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=40.1
Q ss_pred ecceEecceeEeccccEEEeeeEEeee-----ccccEEE-eeeeeEEEeeeeeeecc
Q 013493 144 DSGFRGGGIFVIDSARIRINNCFFLHF-----TTQGILV-QRGHETFISSCFLGQRS 194 (442)
Q Consensus 144 D~n~~~~GIt~~NSq~~~I~Nc~~~~f-----NTDGIhI-~~S~~V~I~nS~Igq~~ 194 (442)
|....+.|+.+.+++.+-|.|..|.+| +-|.|.| ..+|.+-|.+|++-.++
T Consensus 111 ~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s 167 (345)
T COG3866 111 DATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGS 167 (345)
T ss_pred ccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccc
Confidence 345567788888888888888888888 3588999 88899999998888544
No 75
>smart00656 Amb_all Amb_all domain.
Probab=28.88 E-value=5.1e+02 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=18.3
Q ss_pred EEEEEceEEeecceeEeeeccceeeeeEEeeeeccC
Q 013493 286 QVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNG 321 (442)
Q Consensus 286 ~~~i~~~~flgd~~i~l~~~~~~~~g~~i~~n~f~g 321 (442)
++|+-|++|.+-...-+.+ +.-.-+.+.+|.|..
T Consensus 155 ~~hv~NN~~~n~~~~~~~~--~~~~~v~~E~N~F~~ 188 (190)
T smart00656 155 YVHVYNNYYTGWTSYAIGG--RMGATILSEGNYFEA 188 (190)
T ss_pred EEEEEeeEEeCcccEeEec--CCCcEEEEECeEEEC
Confidence 5788888887655322222 112235566777754
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=27.17 E-value=1e+02 Score=21.96 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=24.5
Q ss_pred cEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEE
Q 013493 174 GILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVT 223 (442)
Q Consensus 174 GIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~ 223 (442)
||++..|++..|++..|. . +..||.++ +.++.+.+=.
T Consensus 1 GI~l~~s~~~~i~~N~i~------~-------~~~GI~~~~s~~n~i~~N~ 38 (44)
T TIGR03804 1 GIYLESSSNNTLENNTAS------N-------NSYGIYLTDSSNNTLSNNT 38 (44)
T ss_pred CEEEEecCCCEEECcEEe------C-------CCCEEEEEeCCCCEeECCE
Confidence 788888888888888877 1 12377777 4455554433
No 77
>PLN02665 pectinesterase family protein
Probab=26.99 E-value=1.1e+02 Score=32.59 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
++||..| =+-+|+|++++-.... ...+|+|.+|+|. ..|..+..+.++++
T Consensus 73 ~~dG~Gd-f~TIq~AIdaiP~~~~-----------~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl 122 (366)
T PLN02665 73 RKDGSGD-FKTITDAIKSIPAGNT-----------QRVIIDIGPGEYN--EKITIDRSKPFVTL 122 (366)
T ss_pred cCCCCCC-ccCHHHHHhhCcccCC-----------ceEEEEEeCcEEE--EEEEecCCCCEEEE
Confidence 3456655 6679999987643221 1268999999996 46887755666754
No 78
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=1.1e+02 Score=32.91 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=77.2
Q ss_pred EEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCC----CceeeEEEEEeeeEe---E-EEccceeEEEEEEEe
Q 013493 175 ILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN----DNAITDVTIFSAAIG---V-LLRGQANIVTRVHCY 246 (442)
Q Consensus 175 IhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gn----d~~itDv~i~~a~~G---v-~~~gq~~~~~gvh~~ 246 (442)
..+.+.|++.+-++-=++.|-.-=|-.|+--+.+|..-.+| .|++.++..|=.+-| . .+.|++=.++.+||-
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEc
Confidence 34567888888888866666444455677778888888777 567778888833333 3 367888899999998
Q ss_pred cccccc--ceeeEEEeecccceee--eeeeeecccceeeeCCeEEEEEceEEeecceeEe
Q 013493 247 NKATAF--GGIGILVKLADAALTR--IDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVL 302 (442)
Q Consensus 247 n~~t~~--gg~gi~~~~~~~~~~r--i~ncyld~~~iv~~dp~~~~i~~~~flgd~~i~l 302 (442)
-..-.+ +|.==||.+.+ .+|| |.+||+- -+++.=.|.++-|+.-
T Consensus 300 p~~~~las~GLDRyvRIhD-~ktrkll~kvYvK-----------s~lt~il~~~~~n~e~ 347 (412)
T KOG3881|consen 300 PTHPVLASCGLDRYVRIHD-IKTRKLLHKVYVK-----------SRLTFILLRDDVNIED 347 (412)
T ss_pred CCCceEEeeccceeEEEee-cccchhhhhhhhh-----------ccccEEEecCCccccc
Confidence 663344 44444888877 4554 6788864 2334444555555555
No 79
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=22.77 E-value=5.6e+02 Score=27.98 Aligned_cols=146 Identities=18% Similarity=0.281 Sum_probs=68.9
Q ss_pred EeeeEEeee--ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEec-CCCceeeEEEEEeee-----EeEEE
Q 013493 162 INNCFFLHF--TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLA-SNDNAITDVTIFSAA-----IGVLL 233 (442)
Q Consensus 162 I~Nc~~~~f--NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~-gnd~~itDv~i~~a~-----~Gv~~ 233 (442)
|.+..|.++ ...=|.+.+|+.++-.|++.. |-=+|.|. ||.+.|.+=+|+|.. =||.+
T Consensus 203 Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~e--------------s~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRI 268 (425)
T PF14592_consen 203 VENNLFERCDGEVEIISVKSSDNTIRNNTFRE--------------SQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRI 268 (425)
T ss_dssp EES-EEEEE-SSSEEEEEESBT-EEES-EEES---------------SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE
T ss_pred eecchhhhcCCceeEEEeecCCceEeccEEEe--------------ccceEEEecCCCceEeccEEecCCCcCCCCceEE
Confidence 556566555 344488888888888888876 23357777 999999988888753 29999
Q ss_pred ccceeEEEEEEEecccc-cc-ceeeEEEeecccceeeeeeeeecccceeeeCCeEEEEEceEEeecc-eeEeee------
Q 013493 234 RGQANIVTRVHCYNKAT-AF-GGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDA-NIVLKS------ 304 (442)
Q Consensus 234 ~gq~~~~~gvh~~n~~t-~~-gg~gi~~~~~~~~~~ri~ncyld~~~iv~~dp~~~~i~~~~flgd~-~i~l~~------ 304 (442)
-|+.-++.+=.++++.+ .| |+..+.=-.|+..++| |= .|.-+.|.+.-|..-. .|-+-+
T Consensus 269 i~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~----y~--------qv~nv~I~~NT~In~~~~i~~g~g~~~~~ 336 (425)
T PF14592_consen 269 IGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNR----YD--------QVKNVLIANNTFINCKSPIHFGAGSDEER 336 (425)
T ss_dssp -SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTST----T-----------BSEEEES-EEES-SEEEESST-THHHH
T ss_pred ecCCcEEEcceeeccccceeecceeeccCCCCCCccc----cc--------ccceeEEecceEEccCCceEEcccccccc
Confidence 99998888888888853 22 3333322234433322 11 1223445555555443 233322
Q ss_pred ---------ccceeeeeEEeeeeccCCCCCCccEEEec
Q 013493 305 ---------IKGRISGLTIVENMFNGSPARNVPIIKLD 333 (442)
Q Consensus 305 ---------~~~~~~g~~i~~n~f~g~~~~~~~iv~l~ 333 (442)
-.-.-.-+.+.+|.+-++-...+|++.-|
T Consensus 337 ~~~~~~~~i~s~~p~~~~~~nN~i~~~~~~~~~~~~~d 374 (425)
T PF14592_consen 337 KDVLPASNIRSARPINSTFANNIIYNDDGDQYPIFNND 374 (425)
T ss_dssp HHHHHHCT---B---SEEEES-EEE--SS----SEE-T
T ss_pred ccccccccccccCCceEEeeCCeEEcCCCCccceEecc
Confidence 00124456677777776644555666554
No 80
>PLN02671 pectinesterase
Probab=22.05 E-value=1.6e+02 Score=31.33 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=35.2
Q ss_pred CCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceEE
Q 013493 16 DPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVV 79 (442)
Q Consensus 16 dpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~i 79 (442)
++||..| =.-+|+|++++-.... ...+|+|-+|+|. ..|..+..+.+|++
T Consensus 64 a~dGsGd-f~TIQ~AIdavP~~~~-----------~~~~I~Ik~GvY~--EkV~I~~~k~~Itl 113 (359)
T PLN02671 64 DKNGGGD-SLTVQGAVDMVPDYNS-----------QRVKIYILPGIYR--EKVLVPKSKPYISF 113 (359)
T ss_pred CCCCCCC-ccCHHHHHHhchhcCC-----------ccEEEEEeCceEE--EEEEECCCCCeEEE
Confidence 4566666 6679999987654321 1268999999996 56888756667764
Done!