BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013494
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M158|STR4_ARATH Rhodanese-like domain-containing protein 4, chloroplastic
OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2
Length = 466
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/471 (59%), Positives = 328/471 (69%), Gaps = 54/471 (11%)
Query: 1 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGG 60
MEAL A P+SVL ++RSEPRK SLP L S + Q E F K +GG
Sbjct: 1 MEALKTATFSPMSVLSEKRSEPRK-----PFSLPNLFPPKSQRPISQ---ESFLKRFNGG 52
Query: 61 LVLLSSVL--GTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVT 118
L LL+SVL T A++LTYEEALQQS +S+S D+ G I+ + +F T+NPL IAGGV
Sbjct: 53 LALLTSVLSSATAPAKSLTYEEALQQSMTTSSS-FDSDGLIEGISNFVTDNPLVIAGGVA 111
Query: 119 ILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLG 177
LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA +FRQVGSP+++GLG
Sbjct: 112 ALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLG 171
Query: 178 KRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTI 237
K+ VS VY G+DKPGFLKKLSLKFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY I
Sbjct: 172 KKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAI 231
Query: 238 KDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIG-GSEGFSVTLAIAAAAGLGV 296
KDGAEGPRGW+NS LPWI PKK L LDLS+LT++ISG G S+G SV L +AAAAGL V
Sbjct: 232 KDGAEGPRGWLNSSLPWIEPKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSV 291
Query: 297 LAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 356
AF+EIETILQ+LGSAALVQ A KKLLFAEDRKQTL+QVDEFLNTKVAPKEL D++K+IG
Sbjct: 292 FAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAPKELVDELKEIG 351
Query: 357 KTLLPSPANGKALPA--------STDSKVQKADDSPEAVPQPK----------------- 391
K LLP + KALPA + + D P VP+P+
Sbjct: 352 KALLPQSTSNKALPAPATVTAEAESATATTTTVDKP--VPEPETVAATTTTVDKPVPEPE 409
Query: 392 ----------VEAAADPPPQVNSVPKTEVKADSLPRFQRSLSPYPAYPDLK 432
+EAA QV + P TE +A P R LSPY +YPDLK
Sbjct: 410 PVPEPVPVPAIEAAV--AAQVITEP-TETEAKPKPH-SRPLSPYASYPDLK 456
>sp|Q56XR7|STR4A_ARATH Rhodanese-like domain-containing protein 4A, chloroplastic
OS=Arabidopsis thaliana GN=STR4A PE=2 SV=1
Length = 264
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 2/173 (1%)
Query: 85 SAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNA 144
S+ S+ +D + ++ +F + P +AG V V V+ + + SA NA
Sbjct: 69 SSDPSSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLV--VYPAVMFYLRKYKPISAMNA 126
Query: 145 YAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEP 204
+ KL +++ +QLLDIR + SP+++ LGK V + + +D+ GFL K+ F +
Sbjct: 127 FRKLKNESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDA 186
Query: 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257
ENT + +LD FDGNS VAEL+ NGFK AY I+ GA G GW+ +PP
Sbjct: 187 ENTVVCVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWLAIQEELLPP 239
>sp|Q9AKI4|Y600_RICRI Uncharacterized protein RP600 homolog OS=Rickettsia rickettsii PE=4
SV=1
Length = 123
Score = 50.4 bits (119), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKMLFLSWQLNKDFEDNFLSIINDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|Q9ZCV8|Y600_RICPR Uncharacterized protein RP600 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP600 PE=4 SV=1
Length = 123
Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S+ + + FL ++ K
Sbjct: 11 AYNMLILNNNAFLVDVRTQEEWKQVGIPHLDNKNKVIFLSLQLNKNFEDNFLSIINEKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+T +F L + S + A + G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---DTAIFFLCRSGYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|P0A3K3|YDNAA_RICMO Uncharacterized protein in dnaA 5'region OS=Rickettsia montana PE=4
SV=1
Length = 123
Score = 49.7 bits (117), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|P0A3K2|Y915_RICCN Uncharacterized protein RC0915 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC0915 PE=4 SV=1
Length = 123
Score = 49.7 bits (117), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana
GN=CAS PE=1 SV=1
Length = 387
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 190 KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249
K +LKK++ + + + ILD + ++++VA+ + + G+KN Y + DG G RGW+
Sbjct: 292 KISYLKKIN------KGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSGGRGWLQ 345
Query: 250 SGL 252
S L
Sbjct: 346 SRL 348
>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
Length = 534
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 402 VNSVPKTEVKADSLPRFQRSLSPYPAYPDLKPPTSPTPS 440
V PK E + P+ R LSPY Y DLKPP SP+PS
Sbjct: 493 VEDTPKNEEQHLHEPK-SRPLSPYAMYEDLKPPASPSPS 530
>sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana GN=TIC62 PE=1
SV=1
Length = 641
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 370 PASTDSKVQKADDSPEAVPQPKVEAAADPPPQVNSVPKTEV------KADSLPRFQRSLS 423
P TDS K+ + V + V + SVP+T V A R LS
Sbjct: 475 PGPTDSDTDKSSTVAKTVTETAVATSVTETSVATSVPETAVATSVTETAAPATSKMRPLS 534
Query: 424 PYPAYPDLKPPTSPTPS 440
PY Y DLKPPTSPTP+
Sbjct: 535 PYAIYADLKPPTSPTPA 551
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 420 RSLSPYPAYPDLKPPTSPTPS 440
R LSPY +Y DLKPPTSP P+
Sbjct: 375 RPLSPYASYEDLKPPTSPIPN 395
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 420 RSLSPYPAYPDLKPPTSPTPS 440
R LSPY Y D+KPPTSP PS
Sbjct: 616 RPLSPYTMYADMKPPTSPLPS 636
>sp|Q87QP4|FTSK_VIBPA DNA translocase FtsK OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ftsK PE=3 SV=1
Length = 1028
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 29/140 (20%)
Query: 285 TLAIAAAAGLGVLAFSEIE--TILQILGSAALVQFASKKLLFAEDRKQTLQ-QVDEFLNT 341
TL + G G F+ I I++ LG +L A+ F ++TL+ Q+DEF+
Sbjct: 172 TLVLLFLWGAGFTLFTGISWLNIVEWLGDRSLAVLAAIANKFRGSEQETLEPQLDEFVED 231
Query: 342 KVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQK------ADDSPEAVPQPKVEAA 395
KV+ K + DD + + + LP T +V++ + P +PQ K E +
Sbjct: 232 KVSTKHVEDDQQ-----------DDETLPHLTAYEVEEPKEKAAVHEYPIYMPQAKSETS 280
Query: 396 A-----DPPPQ----VNSVP 406
A +P PQ VN+ P
Sbjct: 281 AVKPTPEPQPQRVAAVNATP 300
>sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis
thaliana GN=At5g19370 PE=2 SV=1
Length = 299
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 124 LVLSQVLNKPKSWGVESARNAYAKLGDDA---SAQLLDIRAPVEFRQVGSPDVRGLGKRP 180
L L QVL++ + ++K+ D AQL+D+R P E P + R
Sbjct: 176 LHLLQVLSEREPVKDIQVEELHSKMQDPVFMDEAQLIDVREPNEIEIASLPGFKVFPLRQ 235
Query: 181 VSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDG 240
G P KL+ PE T F+L K G S VA + GFK+ Y I G
Sbjct: 236 F-----GTWAPDITSKLN-----PEKDT-FVLCKVGGRSMQVANWLQSQGFKSVYNITGG 284
Query: 241 AEG 243
+
Sbjct: 285 IQA 287
>sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=2 SV=4
Length = 3926
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 292 AGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADD 351
A LG + EI Q + + Q +S+ L FAED+K+ Q FLN + A D
Sbjct: 1250 ASLGAAVYEEILQTSQSI--VRMRQASSRDLAFAEDKKKEKQ----FLNAESA---YMDP 1300
Query: 352 IKQIGKTLLP 361
+KQ G L P
Sbjct: 1301 MKQNGGPLTP 1310
>sp|O93794|TOP2_CANGA DNA topoisomerase 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TOP2 PE=3 SV=2
Length = 1406
Score = 32.7 bits (73), Expect = 5.6, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 330 QTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQKADDSPEAVPQ 389
+ Q++D FL PK K+ G +GK PA K++K DD + +
Sbjct: 1167 EDFQKMDLFLRNSAVPKTKGGKRKRKGGDDDDYDPSGKKKPARRIKKIKKEDDFDRILIK 1226
Query: 390 PKVEAAADPPPQVNSVPKTEVKADSLPRFQRSLSPYPAYPDLKPPTS 436
P+ + A P +V P + A S P + L + P++
Sbjct: 1227 PQAKIKAKRPVKVKVEPPSS--AASTPSVKEELGVSDVTSNASTPST 1271
>sp|Q2W2H8|RL1_MAGSA 50S ribosomal protein L1 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplA PE=3 SV=1
Length = 230
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 243 GPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGGSEGFSVTLAIAAAAGLGVLAFSE 301
GPRG M P LG +N+TE + A G F V A AG+G +FSE
Sbjct: 132 GPRGLM--------PNPKLGTVTANVTEAVRAAKAGQVQFRVEKAGIVHAGIGKASFSE 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,918,414
Number of Sequences: 539616
Number of extensions: 7130156
Number of successful extensions: 24475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 22997
Number of HSP's gapped (non-prelim): 1309
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)