Query 013494
Match_columns 442
No_of_seqs 352 out of 1703
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05320 rhodanese superfamily 99.9 5.6E-22 1.2E-26 194.4 8.7 201 47-265 23-231 (257)
2 PRK01415 hypothetical protein; 99.8 7.2E-22 1.6E-26 192.9 6.7 194 47-265 25-229 (247)
3 cd01518 RHOD_YceA Member of th 99.8 6.6E-20 1.4E-24 152.9 8.6 99 138-249 3-101 (101)
4 PLN02160 thiosulfate sulfurtra 99.8 6.1E-19 1.3E-23 157.2 11.0 110 135-258 13-130 (136)
5 cd01533 4RHOD_Repeat_2 Member 99.8 6.1E-19 1.3E-23 149.2 9.3 100 136-251 9-109 (109)
6 PRK00162 glpE thiosulfate sulf 99.8 1.6E-18 3.6E-23 146.4 9.5 104 136-258 4-107 (108)
7 COG1054 Predicted sulfurtransf 99.8 1.4E-19 3.1E-24 179.6 2.9 255 46-334 24-294 (308)
8 KOG1530 Rhodanese-related sulf 99.8 2.6E-18 5.7E-23 153.0 10.1 109 135-255 21-135 (136)
9 cd01522 RHOD_1 Member of the R 99.8 3.8E-18 8.2E-23 147.4 10.4 108 139-255 1-116 (117)
10 cd01523 RHOD_Lact_B Member of 99.8 4.4E-18 9.6E-23 141.4 9.6 96 139-248 1-99 (100)
11 PRK00142 putative rhodanese-re 99.7 5E-18 1.1E-22 170.9 10.1 198 51-269 28-232 (314)
12 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 2E-17 4.4E-22 151.7 11.8 110 135-254 34-162 (162)
13 cd01527 RHOD_YgaP Member of th 99.7 1E-17 2.2E-22 138.7 8.9 98 137-254 2-99 (99)
14 cd01534 4RHOD_Repeat_3 Member 99.7 3.1E-17 6.8E-22 135.6 9.5 94 139-249 1-95 (95)
15 COG0607 PspE Rhodanese-related 99.7 3.2E-17 6.9E-22 136.4 9.1 92 150-257 17-109 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 4.7E-17 1E-21 140.9 8.8 107 136-254 7-118 (122)
17 cd01528 RHOD_2 Member of the R 99.7 8.1E-17 1.8E-21 134.3 8.9 97 138-249 1-98 (101)
18 cd01444 GlpE_ST GlpE sulfurtra 99.7 1E-16 2.2E-21 131.1 8.5 94 139-249 2-96 (96)
19 cd01519 RHOD_HSP67B2 Member of 99.7 1.9E-16 4.2E-21 131.9 9.6 99 140-249 2-106 (106)
20 cd01525 RHOD_Kc Member of the 99.7 9.8E-17 2.1E-21 133.7 7.5 100 139-248 1-104 (105)
21 cd01447 Polysulfide_ST Polysul 99.7 1.4E-16 3.1E-21 131.6 7.7 101 139-251 1-103 (103)
22 cd01530 Cdc25 Cdc25 phosphatas 99.7 2E-16 4.2E-21 138.1 8.9 98 137-248 2-120 (121)
23 cd01521 RHOD_PspE2 Member of t 99.7 5.4E-16 1.2E-20 131.8 10.3 101 136-254 7-110 (110)
24 cd01448 TST_Repeat_1 Thiosulfa 99.7 6.5E-16 1.4E-20 132.5 10.5 101 139-251 2-122 (122)
25 smart00450 RHOD Rhodanese Homo 99.6 6.6E-16 1.4E-20 123.8 9.3 92 151-253 2-100 (100)
26 cd01520 RHOD_YbbB Member of th 99.6 8.6E-16 1.9E-20 134.4 10.3 98 139-249 1-126 (128)
27 cd01449 TST_Repeat_2 Thiosulfa 99.6 4.7E-16 1E-20 132.2 7.8 101 139-249 1-118 (118)
28 cd01535 4RHOD_Repeat_4 Member 99.6 2.2E-15 4.8E-20 135.8 10.3 104 144-265 2-105 (145)
29 cd01531 Acr2p Eukaryotic arsen 99.6 1.5E-15 3.3E-20 129.4 8.7 101 137-250 2-112 (113)
30 PF00581 Rhodanese: Rhodanese- 99.6 2.4E-15 5.2E-20 124.6 9.2 99 140-249 1-112 (113)
31 cd01532 4RHOD_Repeat_1 Member 99.6 2.7E-15 5.9E-20 123.9 8.7 86 147-249 5-92 (92)
32 cd01524 RHOD_Pyr_redox Member 99.6 4E-15 8.8E-20 121.8 9.6 89 139-248 1-89 (90)
33 cd01529 4RHOD_Repeats Member o 99.6 2.3E-15 4.9E-20 124.5 8.1 86 151-249 10-96 (96)
34 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 5E-15 1.1E-19 126.5 8.5 99 137-248 2-112 (113)
35 PRK08762 molybdopterin biosynt 99.6 8.4E-15 1.8E-19 150.0 11.3 105 136-258 2-106 (376)
36 cd00158 RHOD Rhodanese Homolog 99.6 7.7E-15 1.7E-19 116.6 6.8 88 144-248 2-89 (89)
37 PRK07878 molybdopterin biosynt 99.5 3E-14 6.6E-19 147.1 10.2 103 136-254 286-388 (392)
38 TIGR02981 phageshock_pspE phag 99.5 8.1E-14 1.7E-18 118.9 9.6 81 152-249 17-97 (101)
39 PRK07411 hypothetical protein; 99.5 1E-13 2.2E-18 143.2 9.7 106 136-255 281-387 (390)
40 PRK10287 thiosulfate:cyanide s 99.5 1.8E-13 3.9E-18 117.6 8.9 81 152-249 19-99 (104)
41 PRK11493 sseA 3-mercaptopyruva 99.4 4.3E-13 9.3E-18 132.1 10.9 110 138-258 6-137 (281)
42 PRK05600 thiamine biosynthesis 99.4 1.7E-13 3.7E-18 140.9 8.1 95 138-241 272-368 (370)
43 PRK11493 sseA 3-mercaptopyruva 99.4 3.4E-13 7.3E-18 132.9 8.7 109 139-257 155-280 (281)
44 PRK09629 bifunctional thiosulf 99.4 7.4E-13 1.6E-17 144.0 11.4 108 138-257 10-130 (610)
45 PLN02723 3-mercaptopyruvate su 99.4 2.5E-12 5.4E-17 129.5 11.0 109 137-257 22-152 (320)
46 TIGR03167 tRNA_sel_U_synt tRNA 99.4 1.3E-12 2.8E-17 131.9 8.1 93 153-256 2-121 (311)
47 PLN02723 3-mercaptopyruvate su 99.3 2.9E-12 6.2E-17 129.1 9.1 109 139-257 192-318 (320)
48 PRK05597 molybdopterin biosynt 99.3 1.6E-12 3.4E-17 132.9 7.3 94 138-250 262-355 (355)
49 cd01446 DSP_MapKP N-terminal r 99.3 5.9E-12 1.3E-16 110.2 9.7 101 139-249 2-126 (132)
50 PRK11784 tRNA 2-selenouridine 99.3 3E-12 6.6E-17 130.8 8.7 104 140-256 4-135 (345)
51 PRK09629 bifunctional thiosulf 99.3 9.7E-12 2.1E-16 135.4 10.7 114 138-261 148-276 (610)
52 cd01445 TST_Repeats Thiosulfat 99.3 2.6E-11 5.6E-16 108.5 9.8 100 139-248 1-137 (138)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.0 9.4E-10 2E-14 116.8 9.2 82 141-239 397-482 (482)
54 COG2897 SseA Rhodanese-related 99.0 1.4E-09 3.1E-14 108.8 9.1 109 139-257 158-283 (285)
55 KOG2017 Molybdopterin synthase 98.7 9.4E-09 2E-13 104.9 4.7 102 137-250 317-419 (427)
56 COG2897 SseA Rhodanese-related 98.7 1.4E-07 3.1E-12 94.6 11.0 108 138-256 12-138 (285)
57 PLN03209 translocon at the inn 98.3 4.8E-07 1E-11 98.4 5.4 42 401-442 350-391 (576)
58 PLN03209 translocon at the inn 98.3 9.1E-07 2E-11 96.2 6.9 28 415-442 431-458 (576)
59 KOG3772 M-phase inducer phosph 97.9 1.8E-05 3.9E-10 80.7 5.8 104 135-250 154-276 (325)
60 KOG1529 Mercaptopyruvate sulfu 97.6 0.00044 9.5E-09 69.6 10.3 109 138-258 6-138 (286)
61 KOG1529 Mercaptopyruvate sulfu 96.7 0.0035 7.6E-08 63.2 6.4 94 151-249 170-275 (286)
62 TIGR01244 conserved hypothetic 95.9 0.04 8.7E-07 49.3 8.0 88 136-227 12-107 (135)
63 PF04273 DUF442: Putative phos 95.5 0.047 1E-06 47.8 7.1 86 136-225 12-105 (110)
64 COG5105 MIH1 Mitotic inducer, 95.4 0.022 4.7E-07 58.7 4.9 118 134-266 239-374 (427)
65 PF14159 CAAD: CAAD domains of 94.9 0.087 1.9E-06 44.8 6.4 39 302-340 48-86 (90)
66 PLN02777 photosystem I P subun 91.1 0.31 6.7E-06 45.9 4.5 39 303-341 124-162 (167)
67 COG2603 Predicted ATPase [Gene 90.2 0.37 7.9E-06 49.4 4.4 80 152-241 14-123 (334)
68 cd00127 DSPc Dual specificity 88.5 1.5 3.2E-05 37.8 6.5 72 151-231 26-109 (139)
69 smart00195 DSPc Dual specifici 87.5 2.6 5.6E-05 36.7 7.5 73 152-231 26-106 (138)
70 PF13350 Y_phosphatase3: Tyros 83.5 3.3 7.1E-05 37.7 6.3 94 135-232 26-152 (164)
71 PLN02727 NAD kinase 78.3 7.3 0.00016 45.6 8.1 89 136-227 266-364 (986)
72 COG3453 Uncharacterized protei 64.9 20 0.00042 32.8 6.0 82 136-225 13-106 (130)
73 PF09992 DUF2233: Predicted pe 64.5 8 0.00017 35.2 3.7 39 203-241 97-140 (170)
74 KOG1093 Predicted protein kina 63.0 2.5 5.4E-05 47.0 0.1 92 137-241 622-715 (725)
75 PF05706 CDKN3: Cyclin-depende 57.1 26 0.00056 33.4 5.7 78 151-230 70-159 (168)
76 PF01451 LMWPc: Low molecular 55.8 12 0.00026 32.8 3.1 33 209-241 1-38 (138)
77 TIGR02689 ars_reduc_gluta arse 54.2 29 0.00063 30.4 5.3 49 207-255 1-57 (126)
78 PF07462 MSP1_C: Merozoite sur 52.7 25 0.00055 39.0 5.5 17 357-373 255-271 (574)
79 PF00782 DSPc: Dual specificit 52.1 17 0.00037 31.1 3.5 71 154-231 20-101 (133)
80 TIGR00853 pts-lac PTS system, 48.5 22 0.00047 30.2 3.4 35 206-241 3-41 (95)
81 PRK00142 putative rhodanese-re 46.8 3.2 6.9E-05 42.6 -2.2 83 139-235 16-105 (314)
82 PTZ00242 protein tyrosine phos 46.5 1.1E+02 0.0025 28.3 8.2 26 204-229 96-123 (166)
83 PF03853 YjeF_N: YjeF-related 46.1 44 0.00095 30.9 5.4 53 203-256 22-86 (169)
84 PF03162 Y_phosphatase2: Tyros 41.9 37 0.00081 31.6 4.2 27 203-229 88-115 (164)
85 PTZ00393 protein tyrosine phos 41.8 48 0.001 33.3 5.2 69 154-232 118-198 (241)
86 COG2453 CDC14 Predicted protei 41.1 46 0.00099 31.1 4.7 29 204-232 103-134 (180)
87 cd05565 PTS_IIB_lactose PTS_II 39.3 31 0.00068 29.8 3.1 33 208-241 2-38 (99)
88 PF13344 Hydrolase_6: Haloacid 39.0 47 0.001 28.1 4.1 37 191-232 20-57 (101)
89 PRK09590 celB cellobiose phosp 38.6 34 0.00074 29.7 3.2 26 207-232 2-31 (104)
90 smart00226 LMWPc Low molecular 37.4 47 0.001 29.1 4.0 33 209-241 1-34 (140)
91 KOG0333 U5 snRNP-like RNA heli 37.2 48 0.001 37.1 4.7 47 194-241 505-551 (673)
92 cd00927 Cyt_c_Oxidase_VIc Cyto 36.8 1.5E+02 0.0032 24.6 6.4 40 313-356 26-65 (70)
93 PRK10499 PTS system N,N'-diace 36.4 42 0.0009 29.1 3.4 22 207-228 4-25 (106)
94 PRK00575 tatA twin arginine tr 36.1 1.1E+02 0.0025 26.5 5.9 48 309-362 12-60 (92)
95 cd00133 PTS_IIB PTS_IIB: subun 35.7 36 0.00077 26.1 2.7 21 208-228 1-22 (84)
96 PRK12361 hypothetical protein; 35.6 75 0.0016 34.7 6.0 84 139-227 108-198 (547)
97 PF10777 YlaC: Inner membrane 35.6 16 0.00035 34.2 0.7 67 103-174 29-97 (155)
98 PF02302 PTS_IIB: PTS system, 35.2 48 0.001 26.7 3.4 25 208-232 1-30 (90)
99 cd05564 PTS_IIB_chitobiose_lic 34.8 40 0.00087 28.5 3.0 33 208-241 1-37 (96)
100 TIGR03167 tRNA_sel_U_synt tRNA 34.3 91 0.002 32.1 6.0 72 137-220 136-210 (311)
101 PF14606 Lipase_GDSL_3: GDSL-l 33.7 70 0.0015 30.6 4.7 45 192-239 82-144 (178)
102 PRK10126 tyrosine phosphatase; 32.3 61 0.0013 29.2 4.0 34 207-241 3-37 (147)
103 PHA01399 membrane protein P6 31.9 64 0.0014 31.6 4.1 41 74-120 143-183 (242)
104 cd00115 LMWPc Substituted upda 31.3 58 0.0012 28.7 3.6 34 208-241 2-37 (141)
105 KOG1717 Dual specificity phosp 30.8 62 0.0013 33.4 4.0 24 138-162 5-28 (343)
106 PF07462 MSP1_C: Merozoite sur 30.7 1.1E+02 0.0023 34.3 6.0 11 329-339 248-258 (574)
107 COG0062 Uncharacterized conser 30.3 1.1E+02 0.0025 29.8 5.6 35 206-240 49-86 (203)
108 PRK10310 PTS system galactitol 29.7 67 0.0014 27.1 3.5 33 208-241 4-41 (94)
109 PF04722 Ssu72: Ssu72-like pro 29.6 71 0.0015 31.2 4.1 29 208-237 3-32 (195)
110 PRK11391 etp phosphotyrosine-p 29.5 82 0.0018 28.5 4.3 34 207-241 3-37 (144)
111 PF15086 UPF0542: Uncharacteri 28.8 66 0.0014 26.8 3.2 36 93-128 2-37 (74)
112 PLN03050 pyridoxine (pyridoxam 28.3 78 0.0017 31.5 4.2 27 206-232 60-89 (246)
113 cd00079 HELICc Helicase superf 28.2 94 0.002 25.6 4.2 36 205-241 27-62 (131)
114 PRK13530 arsenate reductase; P 28.0 97 0.0021 27.6 4.4 36 207-242 4-40 (133)
115 COG4822 CbiK Cobalamin biosynt 28.0 1.2E+02 0.0026 30.6 5.3 98 136-237 57-173 (265)
116 PF02937 COX6C: Cytochrome c o 27.2 2.7E+02 0.0058 23.0 6.5 32 321-356 36-67 (73)
117 KOG1924 RhoA GTPase effector D 26.5 4.6E+02 0.0099 31.1 10.1 39 74-116 141-179 (1102)
118 PF02590 SPOUT_MTase: Predicte 26.2 89 0.0019 29.0 4.0 42 203-244 64-110 (155)
119 PF04122 CW_binding_2: Putativ 25.5 81 0.0018 25.9 3.2 34 205-241 49-82 (92)
120 PRK04837 ATP-dependent RNA hel 24.8 1.4E+02 0.003 31.2 5.5 38 204-242 253-290 (423)
121 PLN02918 pyridoxine (pyridoxam 23.9 2.1E+02 0.0045 32.1 6.9 49 206-254 135-192 (544)
122 PRK04537 ATP-dependent RNA hel 23.8 1.2E+02 0.0026 33.6 5.1 39 203-242 254-292 (572)
123 PF00156 Pribosyltran: Phospho 23.6 1.5E+02 0.0032 24.9 4.6 33 204-236 86-121 (125)
124 TIGR00640 acid_CoA_mut_C methy 23.2 2E+02 0.0044 25.8 5.6 48 206-253 53-107 (132)
125 PF01488 Shikimate_DH: Shikima 22.5 1.5E+02 0.0032 26.2 4.5 34 204-238 10-43 (135)
126 PRK11192 ATP-dependent RNA hel 22.4 1.8E+02 0.004 30.3 5.9 38 204-242 243-280 (434)
127 COG0514 RecQ Superfamily II DN 22.4 1E+02 0.0022 34.8 4.1 51 204-255 228-284 (590)
128 PF02863 Arg_repressor_C: Argi 22.2 1.2E+02 0.0025 24.4 3.4 26 204-229 45-70 (70)
129 PRK07688 thiamine/molybdopteri 21.9 89 0.0019 32.4 3.4 36 136-172 276-316 (339)
130 cd05566 PTS_IIB_galactitol PTS 21.8 97 0.0021 25.1 3.0 25 207-231 1-30 (89)
131 PRK11267 biopolymer transport 21.7 2.8E+02 0.0061 24.9 6.2 46 193-238 86-134 (141)
132 COG0394 Wzb Protein-tyrosine-p 21.7 1.2E+02 0.0026 27.5 3.8 35 207-241 3-38 (139)
133 PLN03049 pyridoxine (pyridoxam 21.5 1.7E+02 0.0036 31.9 5.5 27 206-232 59-88 (462)
134 COG1440 CelA Phosphotransferas 21.4 96 0.0021 27.4 3.0 23 207-229 2-24 (102)
135 COG2518 Pcm Protein-L-isoaspar 21.3 96 0.0021 30.5 3.3 39 208-249 96-135 (209)
136 cd05567 PTS_IIB_mannitol PTS_I 21.1 1.1E+02 0.0024 25.0 3.2 26 207-232 1-31 (87)
137 PF06679 DUF1180: Protein of u 21.0 81 0.0018 29.9 2.6 54 109-162 96-161 (163)
138 PRK11776 ATP-dependent RNA hel 20.5 1.7E+02 0.0036 30.9 5.2 40 204-244 240-279 (460)
139 PRK14950 DNA polymerase III su 20.4 7.9E+02 0.017 27.4 10.6 18 48-65 27-44 (585)
140 PF01972 SDH_sah: Serine dehyd 20.2 6.8E+02 0.015 26.0 9.1 80 145-237 40-124 (285)
141 COG0513 SrmB Superfamily II DN 20.1 1.8E+02 0.004 31.7 5.5 36 205-241 272-307 (513)
No 1
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.86 E-value=5.6e-22 Score=194.37 Aligned_cols=201 Identities=14% Similarity=0.045 Sum_probs=137.2
Q ss_pred hhHHHHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHH--HH-HH
Q 013494 47 QNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI--LA-VP 123 (442)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~ii~Fi~~npvlva~~v~~--lv-l~ 123 (442)
..+.-|-...+.|||||+.||||++++-+...++++...+.. ++.++.+...+ ++...+|+--+-.-+- ++ +.
T Consensus 23 ~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~---~~~~~dl~~k~-~~~~~~pF~~l~vk~k~eiv~~g 98 (257)
T PRK05320 23 LVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA---DARFADLQVKE-SLSDSQPFRRMLVKLKREIITMK 98 (257)
T ss_pred HHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh---CCCccCceeec-ccccCCCchhccchhhhHHhhcC
Confidence 335567788999999999999999999999999999888766 33333432222 3344455432110000 10 00
Q ss_pred HHHHHhhcCCCCCcccCHHHHHHHhcCC-----CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHh
Q 013494 124 LVLSQVLNKPKSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS 198 (442)
Q Consensus 124 ~~l~~~l~~~~~~g~ISp~EA~elLn~~-----~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~ 198 (442)
+.....+.. ....++++|+.+++++. ++.++||||++.||+. ||++ |++|||++++ .++...+.
T Consensus 99 ~~~~n~~~~--~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi~------GAiniPl~~f--~~~~~~l~ 167 (257)
T PRK05320 99 RPAIRPELG--RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTFD------GALDYRIDKF--TEFPEALA 167 (257)
T ss_pred CcccCcccC--cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-CccC------CCEeCChhHh--hhhHHHHH
Confidence 000001111 24569999999998642 3589999999999997 7765 9999998642 12222232
Q ss_pred hhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCCCcceecc
Q 013494 199 LKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDL 265 (442)
Q Consensus 199 a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~k~~~ldr 265 (442)
......++++||+||++|.||.+|++.|++.||++||+|+||| .+|.+.--.-.-.++.|.||.
T Consensus 168 ~~~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~G~~fVFD~ 231 (257)
T PRK05320 168 AHRADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGI---LKYFEEVGGAHYDGDCFVFDY 231 (257)
T ss_pred hhhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCH---HHHHHhCCCCeeeeeeeeecC
Confidence 2111237899999999999999999999999999999999999 999875322224467888986
No 2
>PRK01415 hypothetical protein; Validated
Probab=99.85 E-value=7.2e-22 Score=192.91 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=135.3
Q ss_pred hhHHHHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHH
Q 013494 47 QNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVL 126 (442)
Q Consensus 47 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~ii~Fi~~npvlva~~v~~lvl~~~l 126 (442)
..+.-|-...+.|||||+.||||++++-+..-++++...+.+ ++.+.++--.+ .....+|+-=+ -..+
T Consensus 25 ~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~---~~~~~~~~~k~-s~~~~~~F~~l--------~vr~ 92 (247)
T PRK01415 25 KLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIK---LTGPKDVNVKI-NYSDVHPFQKL--------KVRL 92 (247)
T ss_pred HHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHh---CcCCCCceeec-ccccCCCCCcc--------EEEe
Confidence 335567788999999999999999999998888888777766 22222221111 12233432100 0000
Q ss_pred HHhh-------cCC--CCCcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHH
Q 013494 127 SQVL-------NKP--KSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKL 197 (442)
Q Consensus 127 ~~~l-------~~~--~~~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL 197 (442)
.+.+ ..+ .....|+|+++.++++ ++++++||||++.||+. ||++ ||+|+|+..+. ++.+.+
T Consensus 93 k~eiV~~g~~~~~~~~~~g~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~-Ghi~------gAinip~~~f~--e~~~~~ 162 (247)
T PRK01415 93 KKEIVAMNVDDLNVDLFKGEYIEPKDWDEFIT-KQDVIVIDTRNDYEVEV-GTFK------SAINPNTKTFK--QFPAWV 162 (247)
T ss_pred eceEEecCCCCCCccccCccccCHHHHHHHHh-CCCcEEEECCCHHHHhc-CCcC------CCCCCChHHHh--hhHHHH
Confidence 1111 000 1245699999999997 78899999999999997 7775 99999975321 111111
Q ss_pred hhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc--cCCCCcceecc
Q 013494 198 SLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDL 265 (442)
Q Consensus 198 ~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPv--v~~~k~~~ldr 265 (442)
......+++++|++||++|.||.+|+..|+++||++||+|+||| .+|.+..-+- .-.++.|.||.
T Consensus 163 ~~~~~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi---~~w~~~~~~~~~~w~G~~fVFD~ 229 (247)
T PRK01415 163 QQNQELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGI---LQYLEDTQNKNNLWQGECFVFDD 229 (247)
T ss_pred hhhhhhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHH---HHHHHhcccCCCeeeeeeeeeCc
Confidence 11112478999999999999999999999999999999999999 9999864432 23467899986
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=6.6e-20 Score=152.90 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=81.5
Q ss_pred ccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCc
Q 013494 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~ 217 (442)
.|++.++.++++ +++.++||||++.||+. ||++ ||+|||+.++ ..+...+....+.+++++|||||++|.
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~-ghi~------gA~~ip~~~~--~~~~~~~~~~~~~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDI-GHFK------GAVNPDVDTF--REFPFWLDENLDLLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhc-CEec------cccCCCcccH--hHhHHHHHhhhhhcCCCEEEEECCCch
Confidence 589999999997 67899999999999997 6664 9999999752 122223322122478899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 218 RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
||..++..|+++||++||+|.||+ .+|.+
T Consensus 73 rs~~a~~~L~~~G~~~v~~l~GG~---~~W~~ 101 (101)
T cd01518 73 RCEKASAYLKERGFKNVYQLKGGI---LKYLE 101 (101)
T ss_pred hHHHHHHHHHHhCCcceeeechhH---HHHhC
Confidence 999999999999999999999999 99973
No 4
>PLN02160 thiosulfate sulfurtransferase
Probab=99.79 E-value=6.1e-19 Score=157.20 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=89.5
Q ss_pred CCcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCc--EEeccCC------CCChhHHHHHhhhcCCCCC
Q 013494 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP--VSIVYKG------DDKPGFLKKLSLKFKEPEN 206 (442)
Q Consensus 135 ~~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgA--inIPl~e------~~~~~fl~eL~a~lk~~Kd 206 (442)
....+++.|+.++++ + +.++||||++.||.. ||++ |+ +|||+.. +..+++..++... .+++
T Consensus 13 ~~~~i~~~e~~~~~~-~-~~~lIDVR~~~E~~~-ghIp------gA~~iniP~~~~~~~~~l~~~~~~~~~~~~--~~~~ 81 (136)
T PLN02160 13 EVVSVDVSQAKTLLQ-S-GHQYLDVRTQDEFRR-GHCE------AAKIVNIPYMLNTPQGRVKNQEFLEQVSSL--LNPA 81 (136)
T ss_pred eeeEeCHHHHHHHHh-C-CCEEEECCCHHHHhc-CCCC------CcceecccchhcCcccccCCHHHHHHHHhc--cCCC
Confidence 467799999999986 3 468999999999997 6664 88 8999732 1123344434321 3678
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013494 207 TTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (442)
Q Consensus 207 kpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (442)
++||+||++|.||..+++.|.+.||++||++.||+ .+|.++|+|+++..
T Consensus 82 ~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 130 (136)
T PLN02160 82 DDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY---LAWVDHSFPINQEE 130 (136)
T ss_pred CcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH---HHHhhCCCCccccc
Confidence 89999999999999999999999999999999999 99999999998743
No 5
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.78 E-value=6.1e-19 Score=149.22 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=82.8
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~s 215 (442)
...++++++.++++++++.++||||++.||.. ||++ |++|||+.+ +...+. .+..+++++||+||++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~-ghIp------gainip~~~-----l~~~~~-~l~~~~~~~ivv~C~~ 75 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGRRFDEYRK-MTIP------GSVSCPGAE-----LVLRVG-ELAPDPRTPIVVNCAG 75 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhc-CcCC------CceeCCHHH-----HHHHHH-hcCCCCCCeEEEECCC
Confidence 45799999999997444689999999999997 5554 999999853 222221 2234678999999999
Q ss_pred CchHHHHHHHHHHcCCCc-EEEcCCCCcChhhHHhCC
Q 013494 216 DGNSELVAELVTINGFKN-AYTIKDGAEGPRGWMNSG 251 (442)
Q Consensus 216 G~RS~~AA~~L~k~GFkn-Vy~L~GGieG~~gW~~aG 251 (442)
|.||..++..|+.+||++ +|+|.||| .+|+.+|
T Consensus 76 G~rs~~a~~~L~~~G~~~~v~~l~gG~---~~W~~~g 109 (109)
T cd01533 76 RTRSIIGAQSLINAGLPNPVAALRNGT---QGWTLAG 109 (109)
T ss_pred CchHHHHHHHHHHCCCCcceeEecCCH---HHHHhcC
Confidence 999999999999999998 99999999 9999876
No 6
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.77 E-value=1.6e-18 Score=146.36 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=88.2
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~s 215 (442)
.+.++++++.++++ +.+.++||||++.||+. ||++ |++|+|+.. +.+.+. . .+++++|+|||.+
T Consensus 4 ~~~is~~el~~~l~-~~~~~ivDvR~~~e~~~-ghi~------gA~~ip~~~-----l~~~~~-~--~~~~~~ivv~c~~ 67 (108)
T PRK00162 4 FECINVEQAHQKLQ-EGGAVLVDIRDPQSFAM-GHAP------GAFHLTNDS-----LGAFMR-Q--ADFDTPVMVMCYH 67 (108)
T ss_pred ccccCHHHHHHHHH-cCCCEEEEcCCHHHHhc-CCCC------CCeECCHHH-----HHHHHH-h--cCCCCCEEEEeCC
Confidence 56799999999996 55789999999999997 5654 999999742 222222 1 3678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013494 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (442)
Q Consensus 216 G~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (442)
|.||..++..|++.||++++++.||+ .+|+..++|+++.+
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~---~~w~~~~~~~~~~~ 107 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGF---EAWRRTFPAEVASG 107 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCH---HHHHhcCCCccCCC
Confidence 99999999999999999999999999 99999999998754
No 7
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.76 E-value=1.4e-19 Score=179.58 Aligned_cols=255 Identities=15% Similarity=0.110 Sum_probs=169.8
Q ss_pred hhhHHHHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHHHHHHHH
Q 013494 46 QQNFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLV 125 (442)
Q Consensus 46 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~ii~Fi~~npvlva~~v~~lvl~~~ 125 (442)
.+.++-|-+..+.||||||.||||+++|.+...+|++...+.+ ++.+++|.-++ .....+|+. -+-..
T Consensus 24 ~~l~~~~~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a---~~~f~~l~~K~-s~~~~~pF~--------r~kVk 91 (308)
T COG1054 24 DPLLALCKALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRA---DPGFADLRFKI-SEADEKPFW--------RLKVK 91 (308)
T ss_pred HHHHHHHHHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHh---Ccccccceeee-ccccCCCcc--------eEEEe
Confidence 3447778899999999999999999999999999999999998 55666654443 223344432 22222
Q ss_pred HHHhh---------cCCCC-CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHH
Q 013494 126 LSQVL---------NKPKS-WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK 195 (442)
Q Consensus 126 l~~~l---------~~~~~-~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~ 195 (442)
+.+.+ ..... ..-|+|+|..+++. +++.++||.|+..||+- ||.. ||++.+...+ .+|.+
T Consensus 92 ~kkEIV~lg~~ddv~p~~~vG~yl~p~~wn~~l~-D~~~vviDtRN~YE~~i-G~F~------gAv~p~~~tF--refP~ 161 (308)
T COG1054 92 LKKEIVALGVEDDVDPLENVGTYLSPKDWNELLS-DPDVVVIDTRNDYEVAI-GHFE------GAVEPDIETF--REFPA 161 (308)
T ss_pred ehhhheecCCCCCcCccccccCccCHHHHHHHhc-CCCeEEEEcCcceeEee-eeec------CccCCChhhh--hhhHH
Confidence 22222 11111 23399999999997 88999999999999995 8985 9999886532 12333
Q ss_pred HHhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcCh-hhHHhCCCCccCCCCcceeccchhhHHHHh
Q 013494 196 KLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP-RGWMNSGLPWIPPKKALGLDLSNLTETISG 274 (442)
Q Consensus 196 eL~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~-~gW~~aGLPvv~~~k~~~ldrq~l~~~i~~ 274 (442)
.+.......++++|++||.+|.|++++..+|+..||++||+|+|||.+| ..-...|.-| -++-|.||. ++...+..
T Consensus 162 ~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~~g~lw--~G~cFVFDe-Rvav~~~l 238 (308)
T COG1054 162 WVEENLDLLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVGTEGSLW--DGKCFVFDE-RVAVPIGL 238 (308)
T ss_pred HHHHHHHhccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcCccCcee--ccceeEecc-eecccCcc
Confidence 3333333457789999999999999999999999999999999999444 1111223212 357788986 44333332
Q ss_pred hhcC-----CchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 013494 275 AIGG-----SEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQ 334 (442)
Q Consensus 275 ~vg~-----s~~~P~~~~laA~vG~Gl~a~s~~~~~lq~~Gt~al~~~l~~kl~~~~~rk~t~~~ 334 (442)
..+. ....|... .+. .+.-+.--++.|.|.--..-.-|+.|.+-+++....
T Consensus 239 ~~~~~~~C~~C~~p~~~--------~~~-~~~~~~~~~~~~~C~~ec~~~~~~r~~e~~r~~~~~ 294 (308)
T COG1054 239 VEGDHTPCDNCRNPLCN--------LLF-ISCEYCEGKYCGCCSDECSEEPRLRYEERQRQRALA 294 (308)
T ss_pred cCCCcchhhhcCCCCCH--------HHh-hcchhhhcccCCCccHHHhhhhhhHHHHHHHHHHHH
Confidence 2211 01113222 122 233444457888888888777777777766655443
No 8
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.6e-18 Score=152.97 Aligned_cols=109 Identities=24% Similarity=0.333 Sum_probs=93.6
Q ss_pred CCcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCC------CCChhHHHHHhhhcCCCCCCe
Q 013494 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKG------DDKPGFLKKLSLKFKEPENTT 208 (442)
Q Consensus 135 ~~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e------~~~~~fl~eL~a~lk~~Kdkp 208 (442)
....++..++.++++ .++.++||||+++||...|+| .+|||||.- +.+++|.+++... +...|+.
T Consensus 21 ~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~-------~siNiPy~~~~~~~~l~~~eF~kqvg~~-kp~~d~e 91 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIP-------ASINIPYMSRPGAGALKNPEFLKQVGSS-KPPHDKE 91 (136)
T ss_pred CcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCc-------ceEeccccccccccccCCHHHHHHhccc-CCCCCCc
Confidence 466799999999997 677999999999999985444 899999952 4567888877532 3456779
Q ss_pred EEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCcc
Q 013494 209 LFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (442)
Q Consensus 209 IVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv 255 (442)
||++|++|.||.+|.+.|..+||+||-++.||+ .+|.+.|+|.+
T Consensus 92 iIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~---~~W~~k~~~~~ 135 (136)
T KOG1530|consen 92 IIFGCASGVRSLKATKILVSAGYKNVGNYPGSY---LAWVDKGGPKK 135 (136)
T ss_pred EEEEeccCcchhHHHHHHHHcCcccccccCccH---HHHHHccCCCC
Confidence 999999999999999999999999999999999 99999998864
No 9
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.76 E-value=3.8e-18 Score=147.36 Aligned_cols=108 Identities=27% Similarity=0.426 Sum_probs=86.8
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhh-hcCCCCCCCCCCCcEEeccCCCCC----hhHHHHHhhhcCCCCCCeEEEEe
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDDK----PGFLKKLSLKFKEPENTTLFILD 213 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~-~~Ghp~L~~~~kgAinIPl~e~~~----~~fl~eL~a~lk~~KdkpIVV~C 213 (442)
||++|+.++++++++.++||||++.||+ . ||++ |++|+|+.++.. ..+...+... .+++++||+||
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~l~~~--~~~~~~ivv~C 71 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFV-GGVP------DAVHVAWQVYPDMEINPNFLAELEEK--VGKDRPVLLLC 71 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcc-cCCC------CceecchhhccccccCHHHHHHHHhh--CCCCCeEEEEc
Confidence 6899999999855689999999999999 7 5554 999999865221 2344444322 26789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCcCh---hhHHhCCCCcc
Q 013494 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLPWI 255 (442)
Q Consensus 214 ~sG~RS~~AA~~L~k~GFknVy~L~GGieG~---~gW~~aGLPvv 255 (442)
++|.||..+++.|+++||++++++.|||++. +||+...+||.
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 9999999999999999999999999999777 66666666664
No 10
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.75 E-value=4.4e-18 Score=141.43 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=77.8
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHH---HHHhhhcCCCCCCeEEEEeCC
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL---KKLSLKFKEPENTTLFILDKF 215 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl---~eL~a~lk~~KdkpIVV~C~s 215 (442)
|+++|+.++++++++.++||||++.||+. ||++ |++|||+.+.. ..+. ++.... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~-ghi~------ga~~ip~~~~~-~~~~~~~~~~~~~--~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYER-WKID------GENNTPYFDPY-FDFLEIEEDILDQ--LPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhh-cccC------CCcccccccch-HHHHHhhHHHHhh--CCCCCeEEEEcCC
Confidence 68899999997556789999999999997 5654 99999987521 1121 111112 3678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013494 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 216 G~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~ 248 (442)
|.||..+++.|+++||+ +|+|+||| .+|+
T Consensus 71 G~rs~~aa~~L~~~G~~-~~~l~GG~---~~W~ 99 (100)
T cd01523 71 EGSSQFVAELLAERGYD-VDYLAGGM---KAWS 99 (100)
T ss_pred CCcHHHHHHHHHHcCce-eEEeCCcH---Hhhc
Confidence 99999999999999998 99999999 9996
No 11
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.74 E-value=5e-18 Score=170.85 Aligned_cols=198 Identities=11% Similarity=0.106 Sum_probs=128.6
Q ss_pred HHHhhhhccceeeeehhhhhhhhhhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHH----HHHH-HHHHHHHHHH
Q 013494 51 ECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPL----AIAG-GVTILAVPLV 125 (442)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~m~~ii~Fi~~npv----lva~-~v~~lvl~~~ 125 (442)
.|..-.+.|+++++.+|||++++.+...+++....+-.. +....+. -+.+....+++ .=+- -+..+.+---
T Consensus 28 ~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~---~~~~~i~-l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~ 103 (314)
T PRK00142 28 LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKAD---PRFADIR-FKISEDDGHAFPRLSVKVRKEIVALGLDDD 103 (314)
T ss_pred HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhC---cCCCCce-EEeccccCCCcccceeeeeeeeeecCCCCC
Confidence 344667889999999999999999876666655555441 1111110 00011111222 0000 0000000000
Q ss_pred HHHhhcCCCCCcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCC
Q 013494 126 LSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPE 205 (442)
Q Consensus 126 l~~~l~~~~~~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~K 205 (442)
+.... .....++++++.++++ +++.++||||++.||+. ||++ ||+|+|+..+ .++.+.+...+...+
T Consensus 104 v~~~~---~~~~~is~~el~~~l~-~~~~vlIDVR~~~E~~~-GhI~------GAi~ip~~~~--~~~~~~l~~~~~~~k 170 (314)
T PRK00142 104 IDPLE---NVGTYLKPKEVNELLD-DPDVVFIDMRNDYEYEI-GHFE------NAIEPDIETF--REFPPWVEENLDPLK 170 (314)
T ss_pred CCccc---cCCcccCHHHHHHHhc-CCCeEEEECCCHHHHhc-CcCC------CCEeCCHHHh--hhhHHHHHHhcCCCC
Confidence 00001 1245699999999997 67899999999999996 6765 9999998652 233334433334568
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc--cCCCCcceeccchhh
Q 013494 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNLT 269 (442)
Q Consensus 206 dkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPv--v~~~k~~~ldrq~l~ 269 (442)
+++||+||++|.||..++.+|+++||++||+|.||| .+|...=-+- .-.++.|.||. ++.
T Consensus 171 dk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~w~G~~fVFD~-R~~ 232 (314)
T PRK00142 171 DKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGI---ITYGEDPETQGLLWDGKLYVFDE-RMA 232 (314)
T ss_pred cCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchH---HHHHHhhccccceeecCCccccC-ccc
Confidence 899999999999999999999999999999999999 9998742211 23467899986 443
No 12
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=2e-17 Score=151.71 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=85.9
Q ss_pred CCcccCHHHHHHHhcCCCCceEEecCChh----hhhhc--------CCCCCCCCCCCcEEeccCC---CCC---hhHHHH
Q 013494 135 SWGVESARNAYAKLGDDASAQLLDIRAPV----EFRQV--------GSPDVRGLGKRPVSIVYKG---DDK---PGFLKK 196 (442)
Q Consensus 135 ~~g~ISp~EA~elLn~~~~avLIDVRt~~----Ef~~~--------Ghp~L~~~~kgAinIPl~e---~~~---~~fl~e 196 (442)
+...|+++++.++++ +++.+|||||++. ||..+ +|++ ||+|||+.. +.. +.|.+.
T Consensus 34 ~~~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIP------GAv~ip~~~~~~l~~~~~~~~~~~ 106 (162)
T TIGR03865 34 GARVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIP------GSLWLPNTGYGNLAPAWQAYFRRG 106 (162)
T ss_pred CccccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCC------CcEEecccCCCCCCCchhHHHHHH
Confidence 567899999999997 6678999999976 56542 2554 999999632 111 123344
Q ss_pred HhhhcCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013494 197 LSLKFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (442)
Q Consensus 197 L~a~lk~~KdkpIVV~C~sG~-RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (442)
+......++|++||+||++|. ||..++..|+++||++||+|.||| .+|+.+|+|+
T Consensus 107 l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~---~aW~~aG~Pv 162 (162)
T TIGR03865 107 LERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT---DGWQAAGLPL 162 (162)
T ss_pred HHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH---HHHHHcCCCC
Confidence 432112368999999999997 899999999999999999999999 9999999995
No 13
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.73 E-value=1e-17 Score=138.72 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=82.8
Q ss_pred cccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCC
Q 013494 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (442)
Q Consensus 137 g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG 216 (442)
..++++|+.++++ + +.++||||+++||.. ||++ |++|||+.++. ... ...+++++||+||++|
T Consensus 2 ~~i~~~el~~~~~-~-~~~liDvR~~~e~~~-~hi~------ga~~ip~~~~~-----~~~---~~~~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACELLA-Q-GAVLVDIREPDEYLR-ERIP------GARLVPLSQLE-----SEG---LPLVGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHHHH-C-CCEEEECCCHHHHHh-CcCC------CCEECChhHhc-----ccc---cCCCCCCcEEEEeCCC
Confidence 3689999999986 3 389999999999997 6664 99999986421 111 1246789999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013494 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (442)
Q Consensus 217 ~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (442)
.||..++..|.++||.++|++.||+ .+|+..|+|+
T Consensus 65 ~~s~~~~~~L~~~g~~~v~~l~gG~---~~W~~~~~~~ 99 (99)
T cd01527 65 MRTQQNAERLAAISAGEAYVLEGGL---DAWKAAGLPV 99 (99)
T ss_pred chHHHHHHHHHHcCCccEEEeeCCH---HHHHHCcCCC
Confidence 9999999999999999999999999 9999999985
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.71 E-value=3.1e-17 Score=135.58 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=75.7
Q ss_pred cCHHHHHHHhcCC-CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCc
Q 013494 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (442)
Q Consensus 139 ISp~EA~elLn~~-~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~ 217 (442)
|++.|+.++++++ ++.++||||++.||+. ||++ |++|||+.+ +..... .+...++++||+||++|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghip------ga~~ip~~~-----l~~~~~-~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEA-GHLP------GFRHTPGGQ-----LVQETD-HFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHh-CCCC------CcEeCCHHH-----HHHHHH-HhcccCCCeEEEECCCCC
Confidence 6889999999744 3678999999999997 5554 999999843 222221 122345789999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 218 RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
||..++..|+.+||+ |++|.||+ .+|+.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~---~~W~~ 95 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGL---AAALA 95 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcH---HHhcC
Confidence 999999999999998 99999999 99963
No 15
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.2e-17 Score=136.40 Aligned_cols=92 Identities=24% Similarity=0.434 Sum_probs=76.9
Q ss_pred CCCCceEEecCChhhhhhcCCCCCCCCCCC-cEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCchHHHHHHHHHH
Q 013494 150 DDASAQLLDIRAPVEFRQVGSPDVRGLGKR-PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTI 228 (442)
Q Consensus 150 ~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kg-AinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k 228 (442)
..++.++||||++.||+..|+| + ++|||++++. .+...+. .+++++|||||++|.||..|++.|++
T Consensus 17 ~~~~~~liDvR~~~e~~~~~i~-------~~~~~ip~~~~~--~~~~~~~----~~~~~~ivv~C~~G~rS~~aa~~L~~ 83 (110)
T COG0607 17 AGEDAVLLDVREPEEYERGHIP-------GAAINIPLSELK--AAENLLE----LPDDDPIVVYCASGVRSAAAAAALKL 83 (110)
T ss_pred ccCCCEEEeccChhHhhhcCCC-------cceeeeecccch--hhhcccc----cCCCCeEEEEeCCCCChHHHHHHHHH
Confidence 3678999999999999986666 7 9999997521 1111110 36799999999999999999999999
Q ss_pred cCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013494 229 NGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (442)
Q Consensus 229 ~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (442)
+||++++++.||| .+|...++|+...
T Consensus 84 ~G~~~~~~l~gG~---~~w~~~~~~~~~~ 109 (110)
T COG0607 84 AGFTNVYNLDGGI---DAWKGAGLPLVRG 109 (110)
T ss_pred cCCccccccCCcH---HHHHhcCCCcccC
Confidence 9999999999999 9999999998764
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.70 E-value=4.7e-17 Score=140.91 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=85.2
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhh----hcCCCCCCeEEE
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL----KFKEPENTTLFI 211 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a----~lk~~KdkpIVV 211 (442)
...|+++++.+++++++++++||||+++||.. ||++ |++|||+.+.. +...++.. ....+++++||+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hIp------gai~ip~~~~~--~~~~~~~~~~~~~~~~~~~~~ivv 77 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRLP------EAINIPLSELL--SKAAELKSLQELPLDNDKDSPIYV 77 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccCC------CCeEccHHHHh--hhhhhhhhhhhcccccCCCCcEEE
Confidence 45799999999997547889999999999997 5554 99999986421 11112210 112367899999
Q ss_pred EeCCCchHHHHHHHHHHcCC-CcEEEcCCCCcChhhHHhCCCCc
Q 013494 212 LDKFDGNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNSGLPW 254 (442)
Q Consensus 212 ~C~sG~RS~~AA~~L~k~GF-knVy~L~GGieG~~gW~~aGLPv 254 (442)
||++|.||..+++.|++.|| ++++++.||| .+|.....+.
T Consensus 78 ~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~---~~W~~~~~~~ 118 (122)
T cd01526 78 VCRRGNDSQTAVRKLKELGLERFVRDIIGGL---KAWADKVDPT 118 (122)
T ss_pred ECCCCCcHHHHHHHHHHcCCccceeeecchH---HHHHHHhCcc
Confidence 99999999999999999999 7999999999 9999886665
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.69 E-value=8.1e-17 Score=134.28 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=78.9
Q ss_pred ccCHHHHHHHhcCC-CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCC
Q 013494 138 VESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (442)
Q Consensus 138 ~ISp~EA~elLn~~-~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG 216 (442)
.|++.++.++++.. ++.++||||++.||.. +|++ |++|+|+.++ .++.+.+.. .+++++||+||++|
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~-~hI~------ga~~ip~~~~--~~~~~~~~~---~~~~~~vv~~c~~g 68 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEI-AFLP------GFLHLPMSEI--PERSKELDS---DNPDKDIVVLCHHG 68 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhc-CcCC------CCEecCHHHH--HHHHHHhcc---cCCCCeEEEEeCCC
Confidence 37899999999743 3689999999999997 4554 9999998531 223333321 14689999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 217 ~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
.||..++..|.+.||+++++|.||+ .+|.+
T Consensus 69 ~rs~~~~~~l~~~G~~~v~~l~GG~---~~w~~ 98 (101)
T cd01528 69 GRSMQVAQWLLRQGFENVYNLQGGI---DAWSL 98 (101)
T ss_pred chHHHHHHHHHHcCCccEEEecCCH---HHHhh
Confidence 9999999999999999999999999 99975
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.68 E-value=1e-16 Score=131.14 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=77.7
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhc-CCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCc
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQV-GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~-Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~ 217 (442)
|++.++.++++++.+.++||||++.||+.. ||++ |++|+|+.+ +.+.+. . .+++++|||||++|.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~------ga~~ip~~~-----~~~~~~-~--~~~~~~ivv~c~~g~ 67 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIP------GAIHLDEDS-----LDDWLG-D--LDRDRPVVVYCYHGN 67 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCC------CCeeCCHHH-----HHHHHh-h--cCCCCCEEEEeCCCC
Confidence 788999999874467999999999999861 5554 999999853 222221 1 367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 218 RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
||..++..|++.||+++++|+||+ .+|+.
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~gG~---~~w~~ 96 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAGGF---EAWRR 96 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCCCH---HHhcC
Confidence 999999999999999999999999 99963
No 19
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.68 E-value=1.9e-16 Score=131.90 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=77.7
Q ss_pred CHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCC------hhHHHHHhhhcCCCCCCeEEEEe
Q 013494 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK------PGFLKKLSLKFKEPENTTLFILD 213 (442)
Q Consensus 140 Sp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~------~~fl~eL~a~lk~~KdkpIVV~C 213 (442)
|++++.++++.+++.++||||++.||.. ||++ ||+|+|+.+... ++|.+.+. ....+++++||+||
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~c 73 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKT-GKIP------GAINIPLSSLPDALALSEEEFEKKYG-FPKPSKDKELIFYC 73 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhc-CcCC------CcEEechHHhhhhhCCCHHHHHHHhc-ccCCCCCCeEEEEC
Confidence 5778888875246799999999999997 6664 999999865211 12222221 12346789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 214 ~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
++|.||..++..|..+||++|+++.||+ .+|.+
T Consensus 74 ~~g~~s~~~~~~l~~~G~~~v~~~~Gg~---~~W~~ 106 (106)
T cd01519 74 KAGVRSKAAAELARSLGYENVGNYPGSW---LDWAA 106 (106)
T ss_pred CCcHHHHHHHHHHHHcCCccceecCCcH---HHHcC
Confidence 9999999999999999999999999999 99963
No 20
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.67 E-value=9.8e-17 Score=133.73 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=76.7
Q ss_pred cCHHHHHHHhcCC-CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-hhHHHHHh--hhcCCCCCCeEEEEeC
Q 013494 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-PGFLKKLS--LKFKEPENTTLFILDK 214 (442)
Q Consensus 139 ISp~EA~elLn~~-~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~-~~fl~eL~--a~lk~~KdkpIVV~C~ 214 (442)
||++++.+++.++ ++.++||||++.||.. ||++ |++|||+.+... ......+. ..+...++++||+||.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~ 73 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRR-GHIE------GSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSH 73 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhC-CccC------CCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeC
Confidence 6889999999642 4689999999999997 5654 999999864210 01111111 1112235889999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013494 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 215 sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~ 248 (442)
+|.||..++..|+..||++||+|.||+ .+|+
T Consensus 74 ~g~~s~~~a~~L~~~G~~~v~~l~GG~---~a~~ 104 (105)
T cd01525 74 SHKHAALFAAFLVKCGVPRVCILDGGI---NALK 104 (105)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEeCcH---HHhc
Confidence 999999999999999999999999999 9996
No 21
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.67 E-value=1.4e-16 Score=131.56 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=78.9
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHh--hhcCCCCCCeEEEEeCCC
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDKFD 216 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~--a~lk~~KdkpIVV~C~sG 216 (442)
|+++++.++++ +++.++||||++.||...||++ |++|+|+..+. .+..... .....+++++|||||.+|
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIp------ga~~ip~~~~~--~~~~~~~~~~~~~~~~~~~ivv~c~~g 71 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIP------GAFHAPRGMLE--FWADPDSPYHKPAFAEDKPFVFYCASG 71 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCC------CcEEcccchhh--hhcCccccccccCCCCCCeEEEEcCCC
Confidence 57899999986 5678999999999995446665 99999985421 1111000 000246789999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCC
Q 013494 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (442)
Q Consensus 217 ~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aG 251 (442)
.||..++..|..+||++|+.+.||+ .+|..+|
T Consensus 72 ~~s~~~~~~l~~~G~~~v~~l~Gg~---~~w~~~g 103 (103)
T cd01447 72 WRSALAGKTLQDMGLKPVYNIEGGF---KDWKEAG 103 (103)
T ss_pred CcHHHHHHHHHHcChHHhEeecCcH---HHHhhcC
Confidence 9999999999999999999999999 9998765
No 22
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.67 E-value=2e-16 Score=138.11 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=78.4
Q ss_pred cccCHHHHHHHhcCC-----CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhh---hcCCCCCCe
Q 013494 137 GVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KFKEPENTT 208 (442)
Q Consensus 137 g~ISp~EA~elLn~~-----~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a---~lk~~Kdkp 208 (442)
..|+++|+.++++++ +++++||||++.||+. ||++ ||+|||+.+ .+.+.+.. .+..+++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghI~------gA~~ip~~~----~l~~~~~~~~~~~~~~~~~~ 70 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNG-GHIK------GAVNLSTKD----ELEEFFLDKPGVASKKKRRV 70 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhC-CcCC------CCEeCCcHH----HHHHHHHHhhcccccCCCCE
Confidence 358999999999743 4789999999999997 6664 999999842 12222211 122578999
Q ss_pred EEEEeC-CCchHHHHHHHHHHc------------CCCcEEEcCCCCcChhhHH
Q 013494 209 LFILDK-FDGNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 209 IVV~C~-sG~RS~~AA~~L~k~------------GFknVy~L~GGieG~~gW~ 248 (442)
||+||. +|.||..++..|+++ ||.+||+|+||| .+|.
T Consensus 71 vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~---~~f~ 120 (121)
T cd01530 71 LIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGY---KNFF 120 (121)
T ss_pred EEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChh---Hhhc
Confidence 999997 999999999999985 999999999999 8884
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.66 E-value=5.4e-16 Score=131.84 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=82.7
Q ss_pred CcccCHHHHHHHhcCC-CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeC
Q 013494 136 WGVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~-~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~ 214 (442)
...++++++.+++.++ ++.++||||++.||.. ||++ |++|||+..+. . ..+. ..+++++||+||+
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~l~-~---~~~~---~i~~~~~vvvyc~ 72 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYAR-GHVP------GAINLPHREIC-E---NATA---KLDKEKLFVVYCD 72 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhc-CCCC------CCEeCCHHHhh-h---Hhhh---cCCCCCeEEEEEC
Confidence 4579999999999644 5689999999999997 5654 99999985421 0 1111 2467899999999
Q ss_pred CCc--hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013494 215 FDG--NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (442)
Q Consensus 215 sG~--RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (442)
+|. +|..++..|+++||+ +++|.||+ .+|+.+|+|+
T Consensus 73 ~g~~~~s~~~a~~l~~~G~~-v~~l~GG~---~~W~~~g~~~ 110 (110)
T cd01521 73 GPGCNGATKAALKLAELGFP-VKEMIGGL---DWWKREGYAT 110 (110)
T ss_pred CCCCchHHHHHHHHHHcCCe-EEEecCCH---HHHHHCCCCC
Confidence 984 899999999999995 99999999 9999999985
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.65 E-value=6.5e-16 Score=132.52 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=81.0
Q ss_pred cCHHHHHHHhcCCCCceEEecCCh-------hhhhhcCCCCCCCCCCCcEEeccCCCCC------------hhHHHHHhh
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAP-------VEFRQVGSPDVRGLGKRPVSIVYKGDDK------------PGFLKKLSL 199 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~-------~Ef~~~Ghp~L~~~~kgAinIPl~e~~~------------~~fl~eL~a 199 (442)
++++++.++++ +++.++||||++ .||+. ||++ |++|||+.+... .++.+.+ .
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~-ghI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLE-GHIP------GAVFFDLDEDLDDKSPGPHMLPSPEEFAELL-G 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhh-CCCC------CCEEcChhhccccCCCCCCCCCCHHHHHHHH-H
Confidence 68999999996 567899999999 99987 6664 999999864211 1122222 2
Q ss_pred hcCCCCCCeEEEEeCC-CchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCC
Q 013494 200 KFKEPENTTLFILDKF-DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (442)
Q Consensus 200 ~lk~~KdkpIVV~C~s-G~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aG 251 (442)
.+..+++++||+||++ |.++..++..|+.+||++||++.||+ .+|..+|
T Consensus 73 ~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g 122 (122)
T cd01448 73 SLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGL---QAWKAEG 122 (122)
T ss_pred HcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH---HHHHhCc
Confidence 2345789999999999 59999999999999999999999999 9999875
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.65 E-value=6.6e-16 Score=123.80 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=73.3
Q ss_pred CCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChh-------HHHHHhhhcCCCCCCeEEEEeCCCchHHHHH
Q 013494 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPG-------FLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (442)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~-------fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA 223 (442)
+++.++||||++.||.. ||++ |++|+|+....... +...+ ......++++||+||.+|.|+..++
T Consensus 2 ~~~~~ivDvR~~~e~~~-~hi~------ga~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv~~c~~g~~a~~~~ 73 (100)
T smart00450 2 DEKVVLLDVRSPEEYEG-GHIP------GAVNIPLSELLDRRGELDILEFEELL-KRLGLDKDKPVVVYCRSGNRSAKAA 73 (100)
T ss_pred CCCEEEEECCCHHHhcc-CCCC------CceeCCHHHhccCCCCcCHHHHHHHH-HHcCCCCCCeEEEEeCCCcHHHHHH
Confidence 46789999999999997 5554 99999986421110 11111 1223578899999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCcChhhHHhCCCC
Q 013494 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (442)
Q Consensus 224 ~~L~k~GFknVy~L~GGieG~~gW~~aGLP 253 (442)
..|+++||++||+|.||+ .+|...|+|
T Consensus 74 ~~l~~~G~~~v~~l~GG~---~~w~~~~~~ 100 (100)
T smart00450 74 WLLRELGFKNVYLLDGGY---KEWSAAGPP 100 (100)
T ss_pred HHHHHcCCCceEEecCCH---HHHHhcCCC
Confidence 999999999999999999 999998875
No 26
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.64 E-value=8.6e-16 Score=134.44 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=75.9
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhH------------------------H
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGF------------------------L 194 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~f------------------------l 194 (442)
||++++.++++ ++.++||||++.||.. ||++ ||+|||+.......+ +
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~-ghIp------gAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFE-GHLP------GAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhcc-CcCC------CcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 68899999985 5789999999999997 5654 999999953111000 0
Q ss_pred HHHhhh---cCCCCCCeEEEEeC-CCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 195 KKLSLK---FKEPENTTLFILDK-FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 195 ~eL~a~---lk~~KdkpIVV~C~-sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
+++..+ ...+++++|||||+ +|.||..++..|+.+|| +|++|.||+ .+|+.
T Consensus 72 ~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~---~aw~~ 126 (128)
T cd01520 72 KRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGY---KAYRK 126 (128)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcH---HHHHh
Confidence 111111 13578999999997 68999999999999999 699999999 99975
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.64 E-value=4.7e-16 Score=132.19 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=79.0
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhh----------cCCCCCCCCCCCcEEeccCCCC-------ChhHHHHHhhhc
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ----------VGSPDVRGLGKRPVSIVYKGDD-------KPGFLKKLSLKF 201 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~----------~Ghp~L~~~~kgAinIPl~e~~-------~~~fl~eL~a~l 201 (442)
++++++.++++ +++.++||||+..||.. .||++ |++|+|+.+.. +++..+++...+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp------gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 73 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIP------GAVNIPWTSLLDEDGTFKSPEELRALFAAL 73 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC------CCcccChHHhcCCCCCcCCHHHHHHHHHHc
Confidence 57889999986 56789999999999974 15664 99999986421 111222222233
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 202 k~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
..+++++||+||++|.||..++..|+.+||++++++.||+ .+|++
T Consensus 74 ~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~---~~W~~ 118 (118)
T cd01449 74 GITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW---SEWGS 118 (118)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH---HHhcC
Confidence 4568899999999999999999999999999999999999 99974
No 28
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.62 E-value=2.2e-15 Score=135.82 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=83.3
Q ss_pred HHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCchHHHHH
Q 013494 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (442)
Q Consensus 144 A~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA 223 (442)
+.+++..+.+.++||||++.||+. ||++ |++++|.. .+.+.+. . ..++++|||||.+|.+|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~-gHIp------gAi~~~~~-----~l~~~l~-~--l~~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVK-RHIP------GAWWVLRA-----QLAQALE-K--LPAAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHc-CCCC------CceeCCHH-----HHHHHHH-h--cCCCCCEEEEeCCChHHHHHH
Confidence 345565455689999999999997 5554 99999853 2333332 2 245789999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCCCcceecc
Q 013494 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDL 265 (442)
Q Consensus 224 ~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~k~~~ldr 265 (442)
..|+..||++|++|.||+ .+|+.+|+|+..+.+...-++
T Consensus 67 ~~L~~~G~~~v~~L~GG~---~aW~~~g~pl~~~~~~~~~~~ 105 (145)
T cd01535 67 ADLAALTVKPVFVLEGGT---AAWIAAGLPVESGETRLASPR 105 (145)
T ss_pred HHHHHcCCcCeEEecCcH---HHHHHCCCCcccCCCCCCCCc
Confidence 999999999999999999 999999999998766555443
No 29
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.61 E-value=1.5e-15 Score=129.43 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=77.8
Q ss_pred cccCHHHHHHHhcCC-CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeC-
Q 013494 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK- 214 (442)
Q Consensus 137 g~ISp~EA~elLn~~-~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~- 214 (442)
..|+++++.++++++ ++.++||||++ ||.. ||++ |++|+|+.++. ....++......+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~-~hi~------gA~~ip~~~l~--~~~~~~~~~~~~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAG-GHIK------GSWHYPSTRFK--AQLNQLVQLLSGSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCC-CcCC------CCEecCHHHHh--hCHHHHHHHHhcCCCCeEEEEeec
Confidence 358999999999743 56789999999 9997 6664 99999986421 12233322222356789999998
Q ss_pred CCchHHHHHHHHHH--------cCCCcEEEcCCCCcChhhHHhC
Q 013494 215 FDGNSELVAELVTI--------NGFKNAYTIKDGAEGPRGWMNS 250 (442)
Q Consensus 215 sG~RS~~AA~~L~k--------~GFknVy~L~GGieG~~gW~~a 250 (442)
+|.|+..+++.|.+ .||++||+|.||+ .+|++.
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~---~~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGF---NAWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChH---HHHHhh
Confidence 77899999998865 4999999999999 999864
No 30
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.61 E-value=2.4e-15 Score=124.57 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=76.8
Q ss_pred CHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCC---CChhHHHH----Hhh-hcCCCCCCeEEE
Q 013494 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD---DKPGFLKK----LSL-KFKEPENTTLFI 211 (442)
Q Consensus 140 Sp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~---~~~~fl~e----L~a-~lk~~KdkpIVV 211 (442)
||+|+.+++ .+++.+|||||++.||.. ||++ |++|||+... ....+... +.. ....+++++||+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~-~hI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYER-GHIP------GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHH-SBET------TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHc-CCCC------CCcccccccccccccccccccccccccccccccccccccee
Confidence 689999999 588999999999999998 5654 9999998321 00111111 111 113477889999
Q ss_pred EeCCCchHHHHHHH-----HHHcCCCcEEEcCCCCcChhhHHh
Q 013494 212 LDKFDGNSELVAEL-----VTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 212 ~C~sG~RS~~AA~~-----L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
||.+|.++..++.. |.++||++|++|.||+ .+|.+
T Consensus 73 yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~---~~w~~ 112 (113)
T PF00581_consen 73 YCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGF---EAWKA 112 (113)
T ss_dssp EESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHH---HHHHH
T ss_pred eeecccccchhHHHHHHHHHHHcCCCCEEEecChH---HHHhc
Confidence 99999999998888 9999999999999999 99986
No 31
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.60 E-value=2.7e-15 Score=123.89 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=67.7
Q ss_pred HhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCch--HHHHHH
Q 013494 147 KLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN--SELVAE 224 (442)
Q Consensus 147 lLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~R--S~~AA~ 224 (442)
+++ ++++++||||++.||.. +|++ |++|||+.+ +.......+ .+++++|||||++|.| |..+++
T Consensus 5 ~~~-~~~~~liDvR~~~e~~~-~hi~------ga~~ip~~~-----~~~~~~~~~-~~~~~~ivl~c~~G~~~~s~~aa~ 70 (92)
T cd01532 5 LLA-REEIALIDVREEDPFAQ-SHPL------WAANLPLSR-----LELDAWVRI-PRRDTPIVVYGEGGGEDLAPRAAR 70 (92)
T ss_pred hhc-CCCeEEEECCCHHHHhh-CCcc------cCeeCCHHH-----HHhhhHhhC-CCCCCeEEEEeCCCCchHHHHHHH
Confidence 443 67899999999999998 5654 999999742 111111111 2468899999999988 689999
Q ss_pred HHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 225 LVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 225 ~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
.|+++||++|++|+||+ .+|++
T Consensus 71 ~L~~~G~~~v~~l~GG~---~~W~~ 92 (92)
T cd01532 71 RLSELGYTDVALLEGGL---QGWRA 92 (92)
T ss_pred HHHHcCccCEEEccCCH---HHHcC
Confidence 99999999999999999 99974
No 32
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.60 E-value=4e-15 Score=121.82 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=73.8
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCch
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN 218 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~R 218 (442)
++++++.+++ +++.++||+|+++||.. ||++ ||+|+|+.+ +...+. . .+++++||+||++|.+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~-~hip------gA~~ip~~~-----~~~~~~-~--~~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEK-GHIK------GAINIPLDE-----LRDRLN-E--LPKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhc-CCCC------CCEeCCHHH-----HHHHHH-h--cCCCCcEEEEcCCChh
Confidence 4688888888 35789999999999997 5664 999999742 322222 1 3567899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013494 219 SELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 219 S~~AA~~L~k~GFknVy~L~GGieG~~gW~ 248 (442)
+..+++.|++.|| ++++|.||+ .+|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~---~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGY---KTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCH---HHhc
Confidence 9999999999999 999999999 9996
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.60 E-value=2.3e-15 Score=124.49 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCC-ChhHHHHHhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHc
Q 013494 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTIN 229 (442)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~-~~~fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~ 229 (442)
+++.++||||++.||+. ||++ ||+|+|+.++. .....+.+. ..+++++||+||.+|.||..++..|++.
T Consensus 10 ~~~~~iiDvR~~~~~~~-~hIp------gA~~ip~~~~~~~~~~~~~~~---~~~~~~~ivv~c~~g~~s~~~~~~l~~~ 79 (96)
T cd01529 10 EPGTALLDVRAEDEYAA-GHLP------GKRSIPGAALVLRSQELQALE---APGRATRYVLTCDGSLLARFAAQELLAL 79 (96)
T ss_pred CCCeEEEeCCCHHHHcC-CCCC------CcEeCCHHHhcCCHHHHHHhh---cCCCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 56789999999999998 5554 99999975421 111111111 2367899999999999999999999999
Q ss_pred CCCcEEEcCCCCcChhhHHh
Q 013494 230 GFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 230 GFknVy~L~GGieG~~gW~~ 249 (442)
||++|++|.||| .+|++
T Consensus 80 G~~~v~~l~GG~---~~W~~ 96 (96)
T cd01529 80 GGKPVALLDGGT---SAWVA 96 (96)
T ss_pred CCCCEEEeCCCH---HHhcC
Confidence 999999999999 99963
No 34
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.58 E-value=5e-15 Score=126.47 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=74.2
Q ss_pred cccCHHHHHHHhcCC-----CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEE
Q 013494 137 GVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFI 211 (442)
Q Consensus 137 g~ISp~EA~elLn~~-----~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV 211 (442)
..|+++++.++++++ ++.++||||++ ||.. ||++ |++|||+..+ .....++...+...++++||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~-ghip------gAi~ip~~~~--~~~~~~~~~~~~~~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEG-GHIK------GSINLPAQSC--YQTLPQVYALFSLAGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCC-Cccc------CceecchhHH--HHHHHHHHHHhhhcCCCEEEE
Confidence 358999999999744 46899999999 9997 6664 9999998642 122222222222356689999
Q ss_pred EeCC-CchHHHHHHHHHH----cCC--CcEEEcCCCCcChhhHH
Q 013494 212 LDKF-DGNSELVAELVTI----NGF--KNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 212 ~C~s-G~RS~~AA~~L~k----~GF--knVy~L~GGieG~~gW~ 248 (442)
||.+ |.||..+++.|.+ .|| .++|+|.||+ .+|.
T Consensus 72 ~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~---~~w~ 112 (113)
T cd01443 72 YCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGI---KAWY 112 (113)
T ss_pred ECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChh---hhhc
Confidence 9997 6899888877654 465 7999999999 9995
No 35
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.58 E-value=8.4e-15 Score=150.03 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=87.4
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~s 215 (442)
+..|+++++.++++ ++.++||||+++||+. ||++ |++|+|+.+ +.+.+. .+..+++++||+||++
T Consensus 2 v~~is~~el~~~l~--~~~~ivDvR~~~e~~~-ghIp------gAi~ip~~~-----l~~~~~-~~~~~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARARAA--QGAVLIDVREAHERAS-GQAE------GALRIPRGF-----LELRIE-THLPDRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHHHh--CCCEEEECCCHHHHhC-CcCC------CCEECCHHH-----HHHHHh-hhcCCCCCeEEEEcCC
Confidence 45799999999995 3589999999999997 5654 999999843 222222 1123678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013494 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (442)
Q Consensus 216 G~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (442)
|.||..+++.|+++||++||++.||+ .+|++.|+|+..+.
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 106 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGF---SAWKDAGLPLERPR 106 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcH---HHHHhcCCcccccc
Confidence 99999999999999999999999999 99999999998763
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.55 E-value=7.7e-15 Score=116.63 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=70.9
Q ss_pred HHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCchHHHHH
Q 013494 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (442)
Q Consensus 144 A~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA 223 (442)
+.++++ +++.++||+|++.||+. +|+. |++|+|+.... ... .....+++++||+||..|.++..++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~-~~i~------ga~~~~~~~~~-----~~~-~~~~~~~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAA-GHIP------GAINIPLSELE-----ERA-ALLELDKDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhc-cccC------CCEecchHHHh-----hHH-HhhccCCCCeEEEEeCCCchHHHHH
Confidence 445665 67899999999999997 5553 99999985311 110 0113578899999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCcChhhHH
Q 013494 224 ELVTINGFKNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 224 ~~L~k~GFknVy~L~GGieG~~gW~ 248 (442)
..|++.||+++|++.||+ .+|.
T Consensus 68 ~~l~~~G~~~v~~l~gG~---~~w~ 89 (89)
T cd00158 68 KLLRKAGGTNVYNLEGGM---LAWK 89 (89)
T ss_pred HHHHHhCcccEEEecCCh---hhcC
Confidence 999999999999999999 8884
No 37
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.52 E-value=3e-14 Score=147.08 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=84.9
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~s 215 (442)
...|+++|+.++++++++.++||||+++||+. ||++ |++|||+.++... ..+. +.+++++||+||++
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~-ghIp------GAinip~~~l~~~---~~~~---~l~~d~~iVvyC~~ 352 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDI-VHIP------GAQLIPKSEILSG---EALA---KLPQDRTIVLYCKT 352 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhc-CCCC------CCEEcChHHhcch---hHHh---hCCCCCcEEEEcCC
Confidence 45699999999997555789999999999997 5654 9999998642211 1221 13678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCc
Q 013494 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (442)
Q Consensus 216 G~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPv 254 (442)
|.||..++..|++.||++||+|+||+ .+|++.+.+-
T Consensus 353 G~rS~~aa~~L~~~G~~~V~~L~GG~---~~W~~~~~~~ 388 (392)
T PRK07878 353 GVRSAEALAALKKAGFSDAVHLQGGV---VAWAKQVDPS 388 (392)
T ss_pred ChHHHHHHHHHHHcCCCcEEEecCcH---HHHHHhcCCC
Confidence 99999999999999999999999999 9999887663
No 38
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.50 E-value=8.1e-14 Score=118.94 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCC
Q 013494 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGF 231 (442)
Q Consensus 152 ~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~GF 231 (442)
.+..+||||+++||.. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|+++||
T Consensus 17 ~~~~lIDvR~~~ef~~-ghIp------gAinip~~~-----l~~~l~-~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQ-EHIQ------GAINIPLKE-----IKEHIA-TAVPDKNDTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred cCCEEEECCCHHHHhc-CCCC------CCEECCHHH-----HHHHHH-HhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 4567999999999997 5554 999999853 222232 12246788999999999999999999999999
Q ss_pred CcEEEcCCCCcChhhHHh
Q 013494 232 KNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 232 knVy~L~GGieG~~gW~~ 249 (442)
++++++ ||+ .+|..
T Consensus 84 ~~v~~~-GG~---~~~~~ 97 (101)
T TIGR02981 84 THAENA-GGI---KDIAM 97 (101)
T ss_pred CeEEec-CCH---HHhhh
Confidence 999986 999 99974
No 39
>PRK07411 hypothetical protein; Validated
Probab=99.48 E-value=1e-13 Score=143.24 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=83.9
Q ss_pred CcccCHHHHHHHhcCCC-CceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeC
Q 013494 136 WGVESARNAYAKLGDDA-SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~-~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~ 214 (442)
...|+++|+.++++++. +.++||||++.||+. ||++ |++|||+.++......+++.. ..++++||+||+
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~-ghIp------GAiniP~~~l~~~~~~~~l~~---l~~d~~IVvyC~ 350 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEI-ARIP------GSVLVPLPDIENGPGVEKVKE---LLNGHRLIAHCK 350 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECCCHHHhcc-CcCC------CCEEccHHHhhcccchHHHhh---cCCCCeEEEECC
Confidence 46799999999997443 689999999999997 5554 999999864221111223321 357899999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCcc
Q 013494 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (442)
Q Consensus 215 sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv 255 (442)
+|.||..++..|+++||++ +++.||+ .+|.....|..
T Consensus 351 ~G~RS~~aa~~L~~~G~~~-~~l~GG~---~~W~~~~~p~~ 387 (390)
T PRK07411 351 MGGRSAKALGILKEAGIEG-TNVKGGI---TAWSREVDPSV 387 (390)
T ss_pred CCHHHHHHHHHHHHcCCCe-EEecchH---HHHHHhcCCCC
Confidence 9999999999999999985 6899999 99999877654
No 40
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.47 E-value=1.8e-13 Score=117.59 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=65.4
Q ss_pred CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCC
Q 013494 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGF 231 (442)
Q Consensus 152 ~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~GF 231 (442)
.+-++||||+++||+. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|.++||
T Consensus 19 ~~~~lIDvR~~~ef~~-ghIp------GAiniP~~~-----l~~~l~-~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~ 85 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQ-EHVQ------GAINIPLKE-----VKERIA-TAVPDKNDTVKLYCNAGRQSGQAKEILSEMGY 85 (104)
T ss_pred CCCEEEECCCHHHHhc-CCCC------ccEECCHHH-----HHHHHH-hcCCCCCCeEEEEeCCChHHHHHHHHHHHcCC
Confidence 4457999999999997 5554 999999853 333332 22345678999999999999999999999999
Q ss_pred CcEEEcCCCCcChhhHHh
Q 013494 232 KNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 232 knVy~L~GGieG~~gW~~ 249 (442)
+++++ .||+ .+|..
T Consensus 86 ~~v~~-~GG~---~~~~~ 99 (104)
T PRK10287 86 THAEN-AGGL---KDIAM 99 (104)
T ss_pred CeEEe-cCCH---HHHhh
Confidence 99988 6999 99974
No 41
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.44 E-value=4.3e-13 Score=132.11 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=86.1
Q ss_pred ccCHHHHHHHhcCCCCceEEecCC----------hhhhhhcCCCCCCCCCCCcEEeccCCCC-----------ChhHHHH
Q 013494 138 VESARNAYAKLGDDASAQLLDIRA----------PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------KPGFLKK 196 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt----------~~Ef~~~Ghp~L~~~~kgAinIPl~e~~-----------~~~fl~e 196 (442)
-++++++.++++ +++.++||+|+ +.||.. ||++ ||+|+|+.... .++..++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~-GHIp------GA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRA-GHIP------GAVFFDIEALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHh-CcCC------CCEEcCHHHhcCCCCCCCCCCCCHHHHHH
Confidence 489999999996 77899999997 788987 5654 99999874311 1111222
Q ss_pred HhhhcCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013494 197 LSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (442)
Q Consensus 197 L~a~lk~~KdkpIVV~C~sG~R-S~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (442)
+-..+..+++++||+||.+|.+ +..++..|...||++|+++.||+ .+|+++|+|+....
T Consensus 78 ~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 137 (281)
T PRK11493 78 AMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGL---AGWQRDDLLLEEGA 137 (281)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCH---HHHHHcCCCccCCC
Confidence 2234456889999999998875 56778899999999999999999 99999999988653
No 42
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.44 E-value=1.7e-13 Score=140.90 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=72.2
Q ss_pred ccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCCh-hHHHHHhhhcCCCCCCeEEEEeCCC
Q 013494 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP-GFLKKLSLKFKEPENTTLFILDKFD 216 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~-~fl~eL~a~lk~~KdkpIVV~C~sG 216 (442)
.++++|+.++++ ++++++||||+++||+. ||++- ..+++|||+.++... ++.+++. ..++ .+|||||++|
T Consensus 272 ~~~~~el~~~l~-~~~~~lIDVR~~~E~~~-ghI~~---~~gAinIPl~~l~~~~~~~~~l~---~~~~-~~Ivv~C~sG 342 (370)
T PRK05600 272 RTDTTSLIDATL-NGSATLLDVREPHEVLL-KDLPE---GGASLKLPLSAITDDADILHALS---PIDG-DNVVVYCASG 342 (370)
T ss_pred ccCHHHHHHHHh-cCCeEEEECCCHHHhhh-ccCCC---CCccEeCcHHHhhcchhhhhhcc---ccCC-CcEEEECCCC
Confidence 478999999997 55689999999999998 55520 015999998653211 1222221 1233 4999999999
Q ss_pred chHHHHHHHHHHcCCCc-EEEcCCCC
Q 013494 217 GNSELVAELVTINGFKN-AYTIKDGA 241 (442)
Q Consensus 217 ~RS~~AA~~L~k~GFkn-Vy~L~GGi 241 (442)
.||..|++.|+++||++ ||+|+|||
T Consensus 343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~ 368 (370)
T PRK05600 343 IRSADFIEKYSHLGHELTLHNLPGGV 368 (370)
T ss_pred hhHHHHHHHHHHcCCCCceEEecccc
Confidence 99999999999999996 99999999
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.42 E-value=3.4e-13 Score=132.86 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=83.2
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCh-hH--HHHHhhhc---C
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP-GF--LKKLSLKF---K 202 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~----------~~Ghp~L~~~~kgAinIPl~e~~~~-~f--l~eL~a~l---k 202 (442)
.+.++....++ +++.+|||+|+++||. ..||++ ||+|+|+.++.++ .+ .++|++.+ .
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIp------gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g 227 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIP------GALNVPWTELVREGELKTTDELDAIFFGRG 227 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCC------CcCCCCHHHhcCCCCcCCHHHHHHHHHhcC
Confidence 34455555554 5678999999999995 136665 9999998653211 11 23443322 3
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHh-CCCCccCC
Q 013494 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN-SGLPWIPP 257 (442)
Q Consensus 203 ~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~-aGLPvv~~ 257 (442)
.+++++||+||++|.||..++..|+.+||++|+++.||+ ..|.. .++|++++
T Consensus 228 ~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~---~eW~~~~~~P~~~~ 280 (281)
T PRK11493 228 VSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW---SEWGARADLPVEPA 280 (281)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH---HHHccCCCCCcCCC
Confidence 567899999999999999999999999999999999999 99998 79999865
No 44
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.41 E-value=7.4e-13 Score=144.03 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=88.1
Q ss_pred ccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCC-----------CC-hhHHHHHhhhcCCCC
Q 013494 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD-----------DK-PGFLKKLSLKFKEPE 205 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~-----------~~-~~fl~eL~a~lk~~K 205 (442)
.|+++++.++++ +++.++||||++.||.. ||++ ||+|++++.. .. +++.+.+ .++..++
T Consensus 10 lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~-GHIP------GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l-~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLD-APELILVDLTSSARYEA-GHIR------GARFVDPKRTQLGKPPAPGLLPDTADLEQLF-GELGHNP 80 (610)
T ss_pred eecHHHHHHHhc-CCCEEEEECCChHHHHh-CCCC------CcEEcChhHhhccCCCCCCCCCCHHHHHHHH-HHcCCCC
Confidence 499999999997 67899999999999997 5554 9999987421 11 1232323 3446788
Q ss_pred CCeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013494 206 NTTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (442)
Q Consensus 206 dkpIVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (442)
+++|||||++| .++..++-.|+.+||++|++|.||+ .+|+.+|+|+...
T Consensus 81 d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~---~aW~~ag~p~~~~ 130 (610)
T PRK09629 81 DAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGV---LAWEAQALPLSTD 130 (610)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCH---HHHHHcCCccccC
Confidence 99999999988 4788999999999999999999999 9999999998654
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.37 E-value=2.5e-12 Score=129.48 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=84.9
Q ss_pred cccCHHHHHHHhcCCCCceEEecC--------C-hhhhhhcCCCCCCCCCCCcEEeccCCCC-----------C-hhHHH
Q 013494 137 GVESARNAYAKLGDDASAQLLDIR--------A-PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLK 195 (442)
Q Consensus 137 g~ISp~EA~elLn~~~~avLIDVR--------t-~~Ef~~~Ghp~L~~~~kgAinIPl~e~~-----------~-~~fl~ 195 (442)
.-|+++++.++++ +++.+|||+| + ..||.+ ||++ ||+|++++++. . ..|.+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~-gHIP------gAi~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQV-AHIP------GALFFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHh-ccCC------CCeecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 3699999999996 6789999996 3 378997 5554 99999874311 1 12222
Q ss_pred HHhhhcCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCC
Q 013494 196 KLSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (442)
Q Consensus 196 eL~a~lk~~KdkpIVV~C~sG~R-S~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~ 257 (442)
.+ ..+...++++|||||++|.+ +..++..|+.+||++|++|.||+ .+|+.+|+|+.+.
T Consensus 94 ~l-~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~---~~W~~~G~pv~~~ 152 (320)
T PLN02723 94 AV-SALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGL---PKWRASGYDVESS 152 (320)
T ss_pred HH-HHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCH---HHHHHcCCCcccC
Confidence 22 33456788999999999875 46777889999999999999999 9999999999864
No 46
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.36 E-value=1.3e-12 Score=131.87 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=68.6
Q ss_pred CceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-------------------------hhHHHHHhhhcC-CCCC
Q 013494 153 SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFLKKLSLKFK-EPEN 206 (442)
Q Consensus 153 ~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~-------------------------~~fl~eL~a~lk-~~Kd 206 (442)
+.++||||++.||.+ ||++ ||+|||+...+. ..+.+.+.+... .+++
T Consensus 2 ~~~liDVRsp~Ef~~-ghip------gAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~ 74 (311)
T TIGR03167 2 FDPLIDVRSPAEFAE-GHLP------GAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGP 74 (311)
T ss_pred CCEEEECCCHHHHhc-CCCc------CCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCC
Confidence 468999999999998 5654 999999953100 001111111001 2345
Q ss_pred CeEEEEe-CCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccC
Q 013494 207 TTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (442)
Q Consensus 207 kpIVV~C-~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~ 256 (442)
++||||| ++|.||..++.+|+.+|| ++++|.||+ .+|+..+++...
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~---~aw~~~~~~~~~ 121 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGY---KAYRRFVIDQLE 121 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChH---HHHHHhhhhhhh
Confidence 5699999 589999999999999999 699999999 999999887655
No 47
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.34 E-value=2.9e-12 Score=129.06 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=84.1
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCh--hH--HHHHhhhc---
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP--GF--LKKLSLKF--- 201 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~----------~~Ghp~L~~~~kgAinIPl~e~~~~--~f--l~eL~a~l--- 201 (442)
++.+++.+.++ +++.+|||+|++.||. ..||++ ||+|||+....+. .| .++|++.+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIP------gAvnip~~~~~~~~~~~~~~~el~~~~~~~ 264 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIP------GSKCVPFPQMLDSSQTLLPAEELKKRFEQE 264 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCC------CCcccCHHHhcCCCCCCCCHHHHHHHHHhc
Confidence 57788888886 5678999999999993 236665 9999998531111 01 12333222
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC-CCCccCC
Q 013494 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (442)
Q Consensus 202 k~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~a-GLPvv~~ 257 (442)
..+++++||+||.+|.||..+.-.|+.+||++|+++.||+ ..|... ++|+..+
T Consensus 265 gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~---~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 265 GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW---TEWGALPDTPVATS 318 (320)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH---HHHhcCCCCCccCC
Confidence 4578899999999999999999999999999999999999 999876 6888764
No 48
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.33 E-value=1.6e-12 Score=132.87 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=73.5
Q ss_pred ccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCCc
Q 013494 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG~ 217 (442)
.++++++.++ .++.++||||+++||+. ||++ |++|||+.++ ..... ....+++++||+||++|.
T Consensus 262 ~i~~~~~~~~---~~~~~IIDVR~~~ef~~-ghIp------gAinip~~~l-----~~~~~-~~~~~~~~~IvvyC~~G~ 325 (355)
T PRK05597 262 VLDVPRVSAL---PDGVTLIDVREPSEFAA-YSIP------GAHNVPLSAI-----REGAN-PPSVSAGDEVVVYCAAGV 325 (355)
T ss_pred ccCHHHHHhc---cCCCEEEECCCHHHHcc-CcCC------CCEEeCHHHh-----hhccc-cccCCCCCeEEEEcCCCH
Confidence 3666666643 24679999999999997 5554 9999998531 11111 011367889999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC
Q 013494 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNS 250 (442)
Q Consensus 218 RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~a 250 (442)
||..++..|++.||++||+++||+ .+|..+
T Consensus 326 rS~~Aa~~L~~~G~~nV~~L~GGi---~~W~~~ 355 (355)
T PRK05597 326 RSAQAVAILERAGYTGMSSLDGGI---EGWLDS 355 (355)
T ss_pred HHHHHHHHHHHcCCCCEEEecCcH---HHHhhC
Confidence 999999999999999999999999 999763
No 49
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.33 E-value=5.9e-12 Score=110.15 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred cCHHHHHHHhcCC-CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCC----hhHH--------HHHhhhcCCCC
Q 013494 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK----PGFL--------KKLSLKFKEPE 205 (442)
Q Consensus 139 ISp~EA~elLn~~-~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~----~~fl--------~eL~a~lk~~K 205 (442)
|+++++.++++.+ ++.++||||++.||+. ||++ ||+|+|+..... .... ++...++...+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~-~hI~------~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSS-SHIR------GAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGE 74 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhh-Cccc------CcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCC
Confidence 7899999999743 5799999999999997 5554 999999863100 0000 01112222236
Q ss_pred CCeEEEEeCCCch---------HHHHHHHHHH--cCCCcEEEcCCCCcChhhHHh
Q 013494 206 NTTLFILDKFDGN---------SELVAELVTI--NGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 206 dkpIVV~C~sG~R---------S~~AA~~L~k--~GFknVy~L~GGieG~~gW~~ 249 (442)
+++|||||.+|.+ +..+++.|.+ .|+.+|+.|+||+ .+|++
T Consensus 75 ~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~---~~w~~ 126 (132)
T cd01446 75 SLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF---EQFSS 126 (132)
T ss_pred CCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH---HHHHh
Confidence 7899999999986 7888888988 5888999999999 99976
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.33 E-value=3e-12 Score=130.81 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=75.9
Q ss_pred CHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCC-------------------------hhHH
Q 013494 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFL 194 (442)
Q Consensus 140 Sp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~-------------------------~~fl 194 (442)
...+..+++ .++.++||||++.||.. ||++ ||+|+|+..... +.+.
T Consensus 4 ~~~~~~~~~--~~~~~lIDVRsp~Ef~~-ghIp------gAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~ 74 (345)
T PRK11784 4 DAQDFRALF--LNDTPLIDVRSPIEFAE-GHIP------GAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIA 74 (345)
T ss_pred cHHHHHHHH--hCCCEEEECCCHHHHhc-CCCC------CeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHH
Confidence 355555555 35789999999999998 5554 999999953100 0111
Q ss_pred HHHhhhcCC--CCCCeEEEEe-CCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccC
Q 013494 195 KKLSLKFKE--PENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (442)
Q Consensus 195 ~eL~a~lk~--~KdkpIVV~C-~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~ 256 (442)
+.+...+.. .++++||||| ++|.||..++.+|..+|| ++++|.||+ .+|+..+++...
T Consensus 75 ~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~---~awr~~~~~~~~ 135 (345)
T PRK11784 75 AHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGY---KAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCH---HHHHHhhHHHHh
Confidence 111111111 3788999999 689999999999999999 699999999 999998876544
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.29 E-value=9.7e-12 Score=135.39 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=89.2
Q ss_pred ccCHHHHHHHhcCCCCceEEecCChhhhh-------hcCCCCCCCCCCCcEEeccCCC-------CChhHHHHHhhhcCC
Q 013494 138 VESARNAYAKLGDDASAQLLDIRAPVEFR-------QVGSPDVRGLGKRPVSIVYKGD-------DKPGFLKKLSLKFKE 203 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt~~Ef~-------~~Ghp~L~~~~kgAinIPl~e~-------~~~~fl~eL~a~lk~ 203 (442)
.++.+++.+.++ +++.++||+|+++||. ..||++ ||+|||+... ..++-++++-..+..
T Consensus 148 ~v~~e~v~~~l~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIP------GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 148 TATREYLQSRLG-AADLAIWDARAPTEYSGEKVVAAKGGHIP------GAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred cccHHHHHHhhC-CCCcEEEECCCccccCCcccccccCCCCC------CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 367889888886 6788999999999995 236665 9999998531 111112222223346
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC-CCCccCCCCcc
Q 013494 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPPKKAL 261 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~a-GLPvv~~~k~~ 261 (442)
+++++||+||.+|.||..+.-.|+.+||++|+++.||+ .+|.+. ++|+.+++...
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw---~eW~~~~~lPv~~~~~~~ 276 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW---GEWGNHPDTPVEVPTVAA 276 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH---HHHhCCCCCccccCCCCc
Confidence 78999999999999999999999999999999999999 999885 89999876543
No 52
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.26 E-value=2.6e-11 Score=108.50 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=76.2
Q ss_pred cCHHHHHHHhcC---CCCceEEecCCh--------hhhhhc-----------CCCCCCCCCCCcEEeccCCCC-------
Q 013494 139 ESARNAYAKLGD---DASAQLLDIRAP--------VEFRQV-----------GSPDVRGLGKRPVSIVYKGDD------- 189 (442)
Q Consensus 139 ISp~EA~elLn~---~~~avLIDVRt~--------~Ef~~~-----------Ghp~L~~~~kgAinIPl~e~~------- 189 (442)
+|++++.+.++. +++.++||+|.. .||... ||++ ||+++|+.+..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP------gAv~~~~~~~~~~~~~~~ 74 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP------GASFFDFEECLDEAGFEE 74 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC------CCEeeCHHHhhCcCCCCC
Confidence 578888888863 467999999987 899851 5554 99999975310
Q ss_pred ----Ch-hHHHHHhhhcCCCCCCeEEEEeCC---CchHHHHHHHHHHcCCCcEEEcCCCCcChhhHH
Q 013494 190 ----KP-GFLKKLSLKFKEPENTTLFILDKF---DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (442)
Q Consensus 190 ----~~-~fl~eL~a~lk~~KdkpIVV~C~s---G~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~ 248 (442)
.. +|.+.+ ..+..+.+++||+||.+ |.++..+.=.|+.+|+++|+++.||+ .+|+
T Consensus 75 ~~~p~~~~~~~~~-~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~---~~W~ 137 (138)
T cd01445 75 SMEPSEAEFAAMF-EAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGF---FEWF 137 (138)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCH---HHhh
Confidence 01 222222 33467789999999986 77888888899999999999999999 9995
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.00 E-value=9.4e-10 Score=116.78 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCC----cEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCC
Q 013494 141 ARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR----PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (442)
Q Consensus 141 p~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kg----AinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG 216 (442)
+.+..+.+ .++.++||||+++||+. +|++ | ++|+|+.+ +...+. ..+++++||+||++|
T Consensus 397 ~~~~~~~~--~~~~~lIDVR~~~E~~~-~hI~------g~~~~a~niP~~~-----l~~~~~---~l~~~~~iivyC~~G 459 (482)
T PRK01269 397 EVETVSEL--PPDDVIIDIRSPDEQED-KPLK------LEGVEVKSLPFYK-----LSTQFG---DLDQSKTYLLYCDRG 459 (482)
T ss_pred hhHHHHhc--CCCCEEEECCCHHHHhc-CCCC------CCCceEEECCHHH-----HHHHHh---hcCCCCeEEEECCCC
Confidence 34445554 46789999999999997 5554 8 99999853 222222 136788999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEcCC
Q 013494 217 GNSELVAELVTINGFKNAYTIKD 239 (442)
Q Consensus 217 ~RS~~AA~~L~k~GFknVy~L~G 239 (442)
.||..+++.|+++||+||+++.+
T Consensus 460 ~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 460 VMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHHcCCccEEecCC
Confidence 99999999999999999998753
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.4e-09 Score=108.82 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=83.2
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhh---------cCCCCCCCCCCCcEEeccCCCCC-------hhHHHHHhhhcC
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ---------VGSPDVRGLGKRPVSIVYKGDDK-------PGFLKKLSLKFK 202 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~---------~Ghp~L~~~~kgAinIPl~e~~~-------~~fl~eL~a~lk 202 (442)
.+..+....+. ....++||+|+++||.. .|||+ ||+|||+.+..+ ++.++.+.+...
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP------GAiNipw~~~~~~~~~~~~~~~~~~l~~~~g 230 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIP------GAINIPWTDLVDDGGLFKSPEEIARLYADAG 230 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCC------CCcCcCHHHHhcCCCccCcHHHHHHHHHhcC
Confidence 45566666664 67888999999999995 26665 999999864221 122223322234
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhC-CCCccCC
Q 013494 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (442)
Q Consensus 203 ~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~a-GLPvv~~ 257 (442)
.+.+++||+||.+|.||....-.|+.+|+.++.++.|+. ..|-+. +.|+..+
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSW---sEWg~~~~~PV~~g 283 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSW---SEWGSDPDRPVETG 283 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChH---HHhhcCCCCccccC
Confidence 688999999999999999999999999998888899999 999887 4587764
No 55
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.72 E-value=9.4e-09 Score=104.95 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred cccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCCC
Q 013494 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (442)
Q Consensus 137 g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~sG 216 (442)
..|+..|..+++.+++..++||||++-||+..+.| .++|||+.+.+.... +++... .....++|+|+|+.|
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP-------~avNIPL~~l~~~~~-~~~~~~-~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP-------EAVNIPLKELRSRSG-KKLQGD-LNTESKDIFVICRRG 387 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc-------cccccchhhhhhhhh-hhhccc-ccccCCCEEEEeCCC
Confidence 46899999999987789999999999999988888 799999976321111 122111 134567899999999
Q ss_pred chHHHHHHHHHHcCC-CcEEEcCCCCcChhhHHhC
Q 013494 217 GNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNS 250 (442)
Q Consensus 217 ~RS~~AA~~L~k~GF-knVy~L~GGieG~~gW~~a 250 (442)
+.|..|++.|++.++ .++..+.||+ .+|...
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl---~~w~~~ 419 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGL---KAWAAK 419 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHH---HHHHHh
Confidence 999999999998644 4677888888 999865
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.4e-07 Score=94.58 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=82.8
Q ss_pred ccCHHHHHHHhcCCC-----CceEEecCCh--hhhhhcCCCCCCCCCCCcEEeccCC-----------CCChhHHHHHhh
Q 013494 138 VESARNAYAKLGDDA-----SAQLLDIRAP--VEFRQVGSPDVRGLGKRPVSIVYKG-----------DDKPGFLKKLSL 199 (442)
Q Consensus 138 ~ISp~EA~elLn~~~-----~avLIDVRt~--~Ef~~~Ghp~L~~~~kgAinIPl~e-----------~~~~~fl~eL~a 199 (442)
-|+++-+.+.+. ++ ++.+++++.. .+|.+.||| ||+.++++. +..++...++-.
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~~HIP-------GAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLEGHIP-------GAVFFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHhccCC-------CCEecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 478888888775 33 7778877777 889875555 999998763 112222233334
Q ss_pred hcCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccC
Q 013494 200 KFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (442)
Q Consensus 200 ~lk~~KdkpIVV~C~sG~-RS~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~ 256 (442)
++.+..|.+||+|+..|+ .+..+.=.|+-+|.++|++|.||+ .+|+++|+|+..
T Consensus 84 ~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~---~~W~~~g~p~~~ 138 (285)
T COG2897 84 ELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGL---PAWKAAGLPLET 138 (285)
T ss_pred HcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCH---HHHHHcCCCccC
Confidence 556789999999997665 577888889999999999999999 999999999885
No 57
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=98.33 E-value=4.8e-07 Score=98.36 Aligned_cols=42 Identities=48% Similarity=0.772 Sum_probs=34.0
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013494 401 QVNSVPKTEVKADSLPRFQRSLSPYPAYPDLKPPTSPTPSQP 442 (442)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
+..+.+..+..+......+||||||+.|+||||||||+|++|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (576)
T PLN03209 350 EAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPP 391 (576)
T ss_pred CCCCCcccccCCCCcCCCCCCCCCccccccCCCCCCCCCCCC
Confidence 334555555555667789999999999999999999999986
No 58
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=98.31 E-value=9.1e-07 Score=96.21 Aligned_cols=28 Identities=57% Similarity=1.046 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013494 415 LPRFQRSLSPYPAYPDLKPPTSPTPSQP 442 (442)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
..+..||||||+.||||||||||+|++|
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (576)
T PLN03209 431 EAKKTRPLSPYARYEDLKPPTSPSPTAP 458 (576)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCCCC
Confidence 3558999999999999999999999984
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=1.8e-05 Score=80.66 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=74.7
Q ss_pred CCcccCHHHHHHHhcCC-----CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHH-HHhhhcCCCCCCe
Q 013494 135 SWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK-KLSLKFKEPENTT 208 (442)
Q Consensus 135 ~~g~ISp~EA~elLn~~-----~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~-eL~a~lk~~Kdkp 208 (442)
.++.||++.+..+|... ..+++||+|-+.||.. |||. ||+||+..+...+-|.. .+.. ...+..-
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~G-GHIk------gavnl~~~~~~~~~f~~~~~~~--~~~~~~i 224 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEG-GHIK------GAVNLYSKELLQDFFLLKDGVP--SGSKRVI 224 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccC-cccc------cceecccHhhhhhhhccccccc--cccCcee
Confidence 57789999999999641 2367899999999995 7874 99999975411111111 0100 1134567
Q ss_pred EEEEeCCC-chHHHHHHHHHH------------cCCCcEEEcCCCCcChhhHHhC
Q 013494 209 LFILDKFD-GNSELVAELVTI------------NGFKNAYTIKDGAEGPRGWMNS 250 (442)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~k------------~GFknVy~L~GGieG~~gW~~a 250 (442)
+|++|-.. .|.-++|+.|+. .-|..+|+|.||+ ..|-..
T Consensus 225 ~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGY---k~ff~~ 276 (325)
T KOG3772|consen 225 LIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGY---KEFFSN 276 (325)
T ss_pred EEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccH---HHHHHh
Confidence 99999877 488899999983 3567899999999 998765
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.58 E-value=0.00044 Score=69.58 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=78.6
Q ss_pred ccCHHHHHHHhcCCCCceEEec---------CChhhhhhcCCCCCCCCCCCcEEeccCCCC-----------C-hhHHHH
Q 013494 138 VESARNAYAKLGDDASAQLLDI---------RAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLKK 196 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDV---------Rt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~-----------~-~~fl~e 196 (442)
.++++-+.+++. +++.++||- -...||...|+| |+.++.++... . +.|.+.
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hip-------ga~~fdld~~~~~s~~~~~~lp~~e~Fa~y 77 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIP-------GASHFDLDIISYPSSPYRHMLPTAEHFAEY 77 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCC-------CceeeeccccccCCCcccccCccHHHHHHH
Confidence 366666677775 577888884 233467765666 89998876411 1 123332
Q ss_pred HhhhcCCCCCCeEEEEeC--CCch-HHHHHHHHHHcCCCcEEEcCCCCcChhhHHhCCCCccCCC
Q 013494 197 LSLKFKEPENTTLFILDK--FDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (442)
Q Consensus 197 L~a~lk~~KdkpIVV~C~--sG~R-S~~AA~~L~k~GFknVy~L~GGieG~~gW~~aGLPvv~~~ 258 (442)
. .++..+.+..+|||++ .|+- |.++.=+++-.|+.+|+.|.||+ ++|+..|+|+....
T Consensus 78 ~-~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~---~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 78 A-SRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGF---RAWKAAGGPVDSSK 138 (286)
T ss_pred H-HhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcH---HHHHHcCCcccccc
Confidence 2 3556788899999999 7764 55666678899999999999999 99999999987654
No 61
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.67 E-value=0.0035 Score=63.19 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=66.4
Q ss_pred CCCceEEecCChhhhhhcCCCC----C-CCCCCCcEEeccCCCC-ChhH---HHHHhhhc---CCCCCCeEEEEeCCCch
Q 013494 151 DASAQLLDIRAPVEFRQVGSPD----V-RGLGKRPVSIVYKGDD-KPGF---LKKLSLKF---KEPENTTLFILDKFDGN 218 (442)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~Ghp~----L-~~~~kgAinIPl~e~~-~~~f---l~eL~a~l---k~~KdkpIVV~C~sG~R 218 (442)
..+...+|-|+..+|.-. -|. + .++.+|++|+|+.+.. .+.+ .+++...+ +...++|+|+-|..|..
T Consensus 170 ~~~~~~~DaRs~grF~Gt-~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gis 248 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGT-EPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGIS 248 (286)
T ss_pred cccceeeecccccccccc-CCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchh
Confidence 456899999999999732 000 0 1223499999987521 1111 12333222 34557999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEcCCCCcChhhHHh
Q 013494 219 SELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (442)
Q Consensus 219 S~~AA~~L~k~GFknVy~L~GGieG~~gW~~ 249 (442)
+...+-.|...| .++-.+.|++ ..|..
T Consensus 249 a~~i~~al~r~g-~~~~lYdGS~---~Ew~~ 275 (286)
T KOG1529|consen 249 ASIIALALERSG-PDAKLYDGSW---TEWAL 275 (286)
T ss_pred HHHHHHHHHhcC-CCcceecccH---HHHhh
Confidence 999999999999 7888899999 88875
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.85 E-value=0.04 Score=49.26 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=52.8
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCC-------CCCCCCcEEeccCCC-CChhHHHHHhhhcCCCCCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV-------RGLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENT 207 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L-------~~~~kgAinIPl~e~-~~~~fl~eL~a~lk~~Kdk 207 (442)
.+.+++++...+-. .+=-.+||.|+..|.. +.|.. ...+-.-++||+... ..+.-+..+...+. ..++
T Consensus 12 s~qlt~~d~~~L~~-~GiktVIdlR~~~E~~--~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~-~~~~ 87 (135)
T TIGR01244 12 SPQLTKADAAQAAQ-LGFKTVINNRPDREEE--SQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG-AAEG 87 (135)
T ss_pred cCCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCC
Confidence 35789999766543 4456799999998854 23320 001224678887531 11222333322232 3468
Q ss_pred eEEEEeCCCchHHHHHHHHH
Q 013494 208 TLFILDKFDGNSELVAELVT 227 (442)
Q Consensus 208 pIVV~C~sG~RS~~AA~~L~ 227 (442)
||+++|++|.|+..++.++.
T Consensus 88 pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred CEEEEcCCChHHHHHHHHHH
Confidence 99999999999888765543
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.54 E-value=0.047 Score=47.82 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=42.1
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCC-------CCCCCCcEEeccCCC-CChhHHHHHhhhcCCCCCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV-------RGLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENT 207 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L-------~~~~kgAinIPl~e~-~~~~fl~eL~a~lk~~Kdk 207 (442)
.+.+++++..++-. .+=-.+|+.|+..|=. +.|.. ..++-.-++||+... ...+-++.+...+. ..++
T Consensus 12 s~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~-~~~~ 87 (110)
T PF04273_consen 12 SGQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE-SLPK 87 (110)
T ss_dssp ECS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH-TTTT
T ss_pred CCCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCC
Confidence 45799999887765 4556799999887632 22210 112224788998641 12222333332222 2357
Q ss_pred eEEEEeCCCchHHHHHHH
Q 013494 208 TLFILDKFDGNSELVAEL 225 (442)
Q Consensus 208 pIVV~C~sG~RS~~AA~~ 225 (442)
||+++|++|.||.....+
T Consensus 88 Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 88 PVLAHCRSGTRASALWAL 105 (110)
T ss_dssp SEEEE-SCSHHHHHHHHH
T ss_pred CEEEECCCChhHHHHHHH
Confidence 999999999999766554
No 64
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.022 Score=58.74 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCCcccCHHHHHHHhcC--C---CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCe
Q 013494 134 KSWGVESARNAYAKLGD--D---ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTT 208 (442)
Q Consensus 134 ~~~g~ISp~EA~elLn~--~---~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~Kdkp 208 (442)
..++.|+++.+..++.. . -+-++||.|=+.||.. |||. +++||--.+ .....+..+ ...-..-
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~G-GHIi------naVNi~s~~----~l~~~F~hk-plThp~a 306 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRG-GHII------NAVNISSTK----KLGLLFRHK-PLTHPRA 306 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecC-ceee------eeeecchHH----HHHHHHHhc-cccCcee
Confidence 35778999999988852 1 2356999999999995 7765 899987432 111111110 0122456
Q ss_pred EEEEeCCC-chHHHHHHHHHHc------------CCCcEEEcCCCCcChhhHHhCCCCccCCCCcceeccc
Q 013494 209 LFILDKFD-GNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLS 266 (442)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~k~------------GFknVy~L~GGieG~~gW~~aGLPvv~~~k~~~ldrq 266 (442)
+|+.|... .|+-..|..|+.+ -|..||+|.||+ ..+-..--.+-.|+.-..|+-|
T Consensus 307 LifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGY---k~fy~n~p~lCdP~~YV~Mn~a 374 (427)
T COG5105 307 LIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGY---KKFYSNYPDLCDPKGYVTMNNA 374 (427)
T ss_pred EEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcH---HHHhhcCccccCcccccccccH
Confidence 89999865 6888888888753 257899999999 7765543334444444445543
No 65
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=94.86 E-value=0.087 Score=44.82 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhh
Q 013494 302 IETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLN 340 (442)
Q Consensus 302 ~~~~lq~~Gt~al~~~l~~kl~~~~~rk~t~~~~~~~~~ 340 (442)
+..++|++|..-.+.|.+|.|+++++|+...++++++-+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k~ 86 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLKK 86 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999998743
No 66
>PLN02777 photosystem I P subunit (PSI-P)
Probab=91.13 E-value=0.31 Score=45.89 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhc
Q 013494 303 ETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNT 341 (442)
Q Consensus 303 ~~~lq~~Gt~al~~~l~~kl~~~~~rk~t~~~~~~~~~~ 341 (442)
-.+||++|..=.++|.+|.|+|.++|+.-+++|+++.++
T Consensus 124 P~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~ 162 (167)
T PLN02777 124 PGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKE 162 (167)
T ss_pred cchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999998543
No 67
>COG2603 Predicted ATPase [General function prediction only]
Probab=90.19 E-value=0.37 Score=49.42 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=49.5
Q ss_pred CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCC------------ChhHH---------HHHh-------hhcCC
Q 013494 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD------------KPGFL---------KKLS-------LKFKE 203 (442)
Q Consensus 152 ~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~------------~~~fl---------~eL~-------a~lk~ 203 (442)
.+..+||||.|.||..++.| +++|.|....+ ..... .++. +++
T Consensus 14 ~~~~lid~rap~ef~~g~~~-------ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f-- 84 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMP-------IAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF-- 84 (334)
T ss_pred cCCceeeccchHHHhcccch-------hhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH--
Confidence 46789999999999984455 78898864200 00000 0111 111
Q ss_pred CCCCeEEEEe-CCCchHHHHHHHH-HHcCCCcEEEcCCCC
Q 013494 204 PENTTLFILD-KFDGNSELVAELV-TINGFKNAYTIKDGA 241 (442)
Q Consensus 204 ~KdkpIVV~C-~sG~RS~~AA~~L-~k~GFknVy~L~GGi 241 (442)
..+.++-++| ++|.||...+.+| ...|++ +--+.||.
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGe 123 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGE 123 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchH
Confidence 1234444445 5556999999999 778885 44567888
No 68
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=88.55 E-value=1.5 Score=37.84 Aligned_cols=72 Identities=7% Similarity=-0.012 Sum_probs=40.4
Q ss_pred CCCceEEecCChhhhhh--cCCCCCCCCCCCcEEeccCCCCChhHH-------HHHhhhcCCCCCCeEEEEeCCCc-hHH
Q 013494 151 DASAQLLDIRAPVEFRQ--VGSPDVRGLGKRPVSIVYKGDDKPGFL-------KKLSLKFKEPENTTLFILDKFDG-NSE 220 (442)
Q Consensus 151 ~~~avLIDVRt~~Ef~~--~Ghp~L~~~~kgAinIPl~e~~~~~fl-------~eL~a~lk~~KdkpIVV~C~sG~-RS~ 220 (442)
.+=..+||+|+..++.. .+.. .-.++|+.+....... +.+... ...+++|+|+|..|. ||.
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDF-------NYLYVPILDLPSQDISKYFDEAVDFIDDA--REKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCc-------eEEEEEceeCCCCChHHHHHHHHHHHHHH--HhcCCcEEEECCCCCchhH
Confidence 44567999999998611 1112 4677887642211111 112111 234679999999996 887
Q ss_pred HH-H-HHHHHcCC
Q 013494 221 LV-A-ELVTINGF 231 (442)
Q Consensus 221 ~A-A-~~L~k~GF 231 (442)
.+ + -.+...|+
T Consensus 97 ~~~~~~l~~~~~~ 109 (139)
T cd00127 97 TLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHcCC
Confidence 44 3 33444443
No 69
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=87.50 E-value=2.6 Score=36.69 Aligned_cols=73 Identities=7% Similarity=0.037 Sum_probs=41.1
Q ss_pred CCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHh---hhc--CCCCCCeEEEEeCCCc-hHHH--HH
Q 013494 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS---LKF--KEPENTTLFILDKFDG-NSEL--VA 223 (442)
Q Consensus 152 ~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~---a~l--k~~KdkpIVV~C~sG~-RS~~--AA 223 (442)
+=..+||++...+....... .-+++|+.+.......+.+. ..+ ....+++|+|+|..|. ||.. ++
T Consensus 26 gi~~Vi~l~~~~~~~~~~~~-------~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~ 98 (138)
T smart00195 26 GITHVINVTNEVPNLNKKGF-------TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIA 98 (138)
T ss_pred CCCEEEEccCCCCCCCCCCC-------EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHH
Confidence 34578999987654221111 46788876521112222111 111 1356789999999995 8774 33
Q ss_pred HHHHHcCC
Q 013494 224 ELVTINGF 231 (442)
Q Consensus 224 ~~L~k~GF 231 (442)
-.+...|+
T Consensus 99 yl~~~~~~ 106 (138)
T smart00195 99 YLMKYRNL 106 (138)
T ss_pred HHHHHhCC
Confidence 44556665
No 70
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=83.47 E-value=3.3 Score=37.74 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCCh----------------hHH----
Q 013494 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP----------------GFL---- 194 (442)
Q Consensus 135 ~~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~----------------~fl---- 194 (442)
....+|.++...+.. -+=-.+||.|++.|......+... ....+++|+...... .++
T Consensus 26 ~l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~--g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 102 (164)
T PF13350_consen 26 NLSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLID--GVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFY 102 (164)
T ss_dssp --TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----T--T-EEEE--SS-S-TTH----------HHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcC--CceeeeecccccccccccccccccccccchhhHHHHHH
Confidence 466799998777663 455689999999999874222111 224566776431100 000
Q ss_pred --------HHHh---hhcCCCCCCeEEEEeCCCc-hHHHHHHHHHH-cCCC
Q 013494 195 --------KKLS---LKFKEPENTTLFILDKFDG-NSELVAELVTI-NGFK 232 (442)
Q Consensus 195 --------~eL~---a~lk~~KdkpIVV~C~sG~-RS~~AA~~L~k-~GFk 232 (442)
+.+. ..+.... .++++.|..|. |...++..|.. +|..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 103 REMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 0111 1122233 69999999996 66666655544 5653
No 71
>PLN02727 NAD kinase
Probab=78.27 E-value=7.3 Score=45.64 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=53.2
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCC------CCCCCCcEEeccCC--CCChhHHHHHhhhcCCCCCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV------RGLGKRPVSIVYKG--DDKPGFLKKLSLKFKEPENT 207 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L------~~~~kgAinIPl~e--~~~~~fl~eL~a~lk~~Kdk 207 (442)
.+.+++++...+.+ .+=-.+|+.|...|-. +.... ..++-..+|||+.. ...++.++++.+.+...-.+
T Consensus 266 sgQpspe~la~LA~-~GfKTIINLRpd~E~~--q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpk 342 (986)
T PLN02727 266 GGQVTEEGLKWLLE-KGFKTIVDLRAEIVKD--NFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKK 342 (986)
T ss_pred eCCCCHHHHHHHHH-CCCeEEEECCCCCcCC--CchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 46799999877664 4445799999988821 11100 01223578999843 11233444443333223468
Q ss_pred eEEEEeCCCchH--HHHHHHHH
Q 013494 208 TLFILDKFDGNS--ELVAELVT 227 (442)
Q Consensus 208 pIVV~C~sG~RS--~~AA~~L~ 227 (442)
||+++|++|.|+ ..+|.+|.
T Consensus 343 PVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 343 PIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CEEEECCCCCchHHHHHHHHHH
Confidence 999999999953 35566665
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.87 E-value=20 Score=32.76 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=50.8
Q ss_pred CcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCC-------CCCCCCcEEeccCC--CC---ChhHHHHHhhhcCC
Q 013494 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV-------RGLGKRPVSIVYKG--DD---KPGFLKKLSLKFKE 203 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L-------~~~~kgAinIPl~e--~~---~~~fl~eL~a~lk~ 203 (442)
.+.+++.++.++-. ..=..+|--|+..|=. +-|.. +.++--..+||... +. -..|.+.+.
T Consensus 13 sgQi~~~D~~~iaa-~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~----- 84 (130)
T COG3453 13 SGQISPADIASIAA-LGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD----- 84 (130)
T ss_pred cCCCCHHHHHHHHH-hccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH-----
Confidence 46799999877654 4445688888877642 44421 11222356788753 11 123444443
Q ss_pred CCCCeEEEEeCCCchHHHHHHH
Q 013494 204 PENTTLFILDKFDGNSELVAEL 225 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~ 225 (442)
.-+.||+-||++|.||...-.+
T Consensus 85 eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 85 EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HhCCCEEeeecCCchHHHHHHH
Confidence 2368999999999999866443
No 73
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=64.48 E-value=8 Score=35.21 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCCCCeEEEEeCC-----CchHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 203 EPENTTLFILDKF-----DGNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 203 ~~KdkpIVV~C~s-----G~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
.+++..++++|-. |..-...++.|+++|..++.+|+||-
T Consensus 97 ~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGg 140 (170)
T PF09992_consen 97 VTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGG 140 (170)
T ss_dssp E-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GG
T ss_pred EeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCc
Confidence 3455566666544 57778899999999999999999997
No 74
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=63.03 E-value=2.5 Score=46.98 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=57.5
Q ss_pred cccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHh--hhcCCCCCCeEEEEeC
Q 013494 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDK 214 (442)
Q Consensus 137 g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~--a~lk~~KdkpIVV~C~ 214 (442)
.++++++...+ ....++|.|...||...|.+ +++|||++- .+.-++.+. ......+++.++++-.
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s-------~s~nip~~~--~ea~l~~~~~l~~~~~~~~~~~v~~~~ 688 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQREHFS-------DSINIPFNN--HEADLDWLRFLPGIVCSEGKKCVVVGK 688 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHHhhcc-------ccccCCccc--hHHHHHHhhcchHhHHhhCCeEEEecc
Confidence 34666665544 45789999999999985555 799999862 111111111 0001234566666666
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 215 FDGNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 215 sG~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
....+..-...+..+-|-+...+.+|+
T Consensus 689 ~~K~~~e~~~~~~~mk~p~~cil~~~~ 715 (725)
T KOG1093|consen 689 NDKHAAERLTELYVMKVPRICILHDGF 715 (725)
T ss_pred chHHHHHHhhHHHHhcccHHHHHHHHH
Confidence 555566666666677777777788888
No 75
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=57.11 E-value=26 Score=33.37 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCCceEEecCChhhhhhcCCCCCC----CCCCCcEEeccCCCCChh------HHHHHhhhcCCCCCCeEEEEeCCC-chH
Q 013494 151 DASAQLLDIRAPVEFRQVGSPDVR----GLGKRPVSIVYKGDDKPG------FLKKLSLKFKEPENTTLFILDKFD-GNS 219 (442)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~Ghp~L~----~~~kgAinIPl~e~~~~~------fl~eL~a~lk~~KdkpIVV~C~sG-~RS 219 (442)
..-..+|=.=+..|....+++.+. ..+-.-+|+|+.+..-++ +.++|...+ ..+++|+|.|+.| +|+
T Consensus 70 ~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~vHC~GGlGRt 147 (168)
T PF05706_consen 70 WGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVLVHCRGGLGRT 147 (168)
T ss_dssp TT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EEEE-SSSSSHH
T ss_pred CCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEECCCCCCHH
Confidence 333345558888888887877641 122235678876422222 223443333 3478999999999 477
Q ss_pred HH-HHHHHHHcC
Q 013494 220 EL-VAELVTING 230 (442)
Q Consensus 220 ~~-AA~~L~k~G 230 (442)
.. ||..|.+.|
T Consensus 148 GlvAAcLLl~L~ 159 (168)
T PF05706_consen 148 GLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHc
Confidence 65 677777765
No 76
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=55.77 E-value=12 Score=32.81 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=28.5
Q ss_pred EEEEeCCC-chHHHHHHHHHHc----CCCcEEEcCCCC
Q 013494 209 LFILDKFD-GNSELVAELVTIN----GFKNAYTIKDGA 241 (442)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~k~----GFknVy~L~GGi 241 (442)
|+++|..+ .||..|..+|++. +-.++.+...|+
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~ 38 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGT 38 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEES
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEee
Confidence 68899875 5999999999988 777889999999
No 77
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=54.25 E-value=29 Score=30.39 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=35.2
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCcCh-------hhHHhCCCCcc
Q 013494 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (442)
Q Consensus 207 kpIVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGieG~-------~gW~~aGLPvv 255 (442)
++|+++|... .||..|..+|++++-.++.+...|+++. ...++.|+++.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 3689999655 6899999999987655677778888542 44555666653
No 78
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=52.73 E-value=25 Score=38.97 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=10.8
Q ss_pred cccccCCCCCCCccCCc
Q 013494 357 KTLLPSPANGKALPAST 373 (442)
Q Consensus 357 ~~ll~~~~~~~~~~~~~ 373 (442)
|-|||..++..+.|+++
T Consensus 255 qELLPKvtTQeAasaAA 271 (574)
T PF07462_consen 255 QELLPKVTTQEAASAAA 271 (574)
T ss_pred HHhCCCCCCCCCCCCCC
Confidence 45789887655555543
No 79
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=52.10 E-value=17 Score=31.14 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=38.4
Q ss_pred ceEEecCChhhh---hhcCCCCCCCCCCCcEEeccCCCCC---hhHHHHHhhhc--CCCCCCeEEEEeCCCc-hHHH-HH
Q 013494 154 AQLLDIRAPVEF---RQVGSPDVRGLGKRPVSIVYKGDDK---PGFLKKLSLKF--KEPENTTLFILDKFDG-NSEL-VA 223 (442)
Q Consensus 154 avLIDVRt~~Ef---~~~Ghp~L~~~~kgAinIPl~e~~~---~~fl~eL~a~l--k~~KdkpIVV~C~sG~-RS~~-AA 223 (442)
..+|+++.+.+. ...... .-+++|+.+... ...++.+..-+ ...++.+|+|.|..|. ||.. ++
T Consensus 20 ~~Vin~~~~~~~~~~~~~~~~-------~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 20 THVINLQEECPNPYFYKPEGI-------EYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp EEEEECSSSSSTSHHHTTTTS-------EEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHH
T ss_pred CEEEEccCCCcCchhcccCCC-------EEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHH
Confidence 468999997664 111222 456788754111 11222221111 1246789999999996 6653 33
Q ss_pred H-HHHHcCC
Q 013494 224 E-LVTINGF 231 (442)
Q Consensus 224 ~-~L~k~GF 231 (442)
. .+...|+
T Consensus 93 ayLm~~~~~ 101 (133)
T PF00782_consen 93 AYLMKKNGM 101 (133)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHcCC
Confidence 3 4555565
No 80
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=48.50 E-value=22 Score=30.24 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCeEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 013494 206 NTTLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (442)
Q Consensus 206 dkpIVV~C~sG~RS~~AA~~L~----k~GFknVy~L~GGi 241 (442)
.++|+++|.+|..|...++.++ +.|++ +-+-..++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~ 41 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSY 41 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecH
Confidence 4689999999998877776655 45763 33333344
No 81
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=46.81 E-value=3.2 Score=42.55 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=53.2
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeEEEEeCC--C
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF--D 216 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpIVV~C~s--G 216 (442)
-+++++.+.+. .....+|||....|...|++ |++++|+.. -..+..-|.. .+..++|++.-.. +
T Consensus 16 ~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIn-------gtis~~~~~--~~~~~~~l~~---~~~~~~i~l~~~~~~~ 81 (314)
T PRK00142 16 EDPEAFRDEHL--ALCKSLGLKGRILVAEEGIN-------GTVSGTIEQ--TEAYMAWLKA---DPRFADIRFKISEDDG 81 (314)
T ss_pred CCHHHHHHHHH--HHHHHcCCeeEEEEcCCCce-------EEEEecHHH--HHHHHHHHhh---CcCCCCceEEeccccC
Confidence 45677777764 35678999999999985655 999999742 2234443321 2235666666444 2
Q ss_pred chH----HHHHHHHHHcCCC-cEE
Q 013494 217 GNS----ELVAELVTINGFK-NAY 235 (442)
Q Consensus 217 ~RS----~~AA~~L~k~GFk-nVy 235 (442)
..- .++.+.|...|+. ++.
T Consensus 82 ~~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 82 HAFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred CCcccceeeeeeeeeecCCCCCCC
Confidence 222 5677778888885 553
No 82
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=46.50 E-value=1.1e+02 Score=28.30 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=18.5
Q ss_pred CCCCeEEEEeCCCc-hHHH-HHHHHHHc
Q 013494 204 PENTTLFILDKFDG-NSEL-VAELVTIN 229 (442)
Q Consensus 204 ~KdkpIVV~C~sG~-RS~~-AA~~L~k~ 229 (442)
.++.+|+|.|..|. ||.. ++..|.+.
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999995 7765 34455443
No 83
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.15 E-value=44 Score=30.90 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCCCCeEEEEeCCCch---HHHHHHHHHHcCCCcEEE--cCCCCcCh-------hhHHhCCCCccC
Q 013494 203 EPENTTLFILDKFDGN---SELVAELVTINGFKNAYT--IKDGAEGP-------RGWMNSGLPWIP 256 (442)
Q Consensus 203 ~~KdkpIVV~C~sG~R---S~~AA~~L~k~GFknVy~--L~GGieG~-------~gW~~aGLPvv~ 256 (442)
..+..+|+|+|-.|+. ...+|+.|.+.||+ |.+ +...-... .-+++.|.++..
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 4678899999999875 67899999999996 444 32211111 455666766654
No 84
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=41.91 E-value=37 Score=31.57 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=19.4
Q ss_pred CCCCCeEEEEeCCCc-hHHHHHHHHHHc
Q 013494 203 EPENTTLFILDKFDG-NSELVAELVTIN 229 (442)
Q Consensus 203 ~~KdkpIVV~C~sG~-RS~~AA~~L~k~ 229 (442)
..++.||+|+|..|. |...+...|++.
T Consensus 88 d~~n~PvLiHC~~G~~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 88 DPRNYPVLIHCNHGKDRTGLVVGCLRKL 115 (164)
T ss_dssp -GGG-SEEEE-SSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcchhhHHHHHHHH
Confidence 345789999999995 788888888874
No 85
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=41.81 E-value=48 Score=33.29 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=38.7
Q ss_pred ceEEecCCh----hhhhhcCCCCCCCCCCCcEEeccCCCCC--h----hHHHHHhhhcCCCCCCeEEEEeCCCc-hHH-H
Q 013494 154 AQLLDIRAP----VEFRQVGSPDVRGLGKRPVSIVYKGDDK--P----GFLKKLSLKFKEPENTTLFILDKFDG-NSE-L 221 (442)
Q Consensus 154 avLIDVRt~----~Ef~~~Ghp~L~~~~kgAinIPl~e~~~--~----~fl~eL~a~lk~~KdkpIVV~C~sG~-RS~-~ 221 (442)
..||++.++ ++|...|+- -.++|+.+... . .|++.+...+ ..+.+|+|.|..|. |+. .
T Consensus 118 ~~lVrlcE~~Yd~~~~~~~GI~--------~~~lpipDg~aPs~~~i~~~l~~i~~~l--~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 118 TDLVRTCERTYNDGEITSAGIN--------VHELIFPDGDAPTVDIVSNWLTIVNNVI--KNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred CEEEECCCCCCCHHHHHHcCCe--------EEEeecCCCCCCCHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH
Confidence 456766442 355554442 45667654221 1 2333332222 35678999999994 665 5
Q ss_pred HHHHHHHcCCC
Q 013494 222 VAELVTINGFK 232 (442)
Q Consensus 222 AA~~L~k~GFk 232 (442)
+|..|.+.|++
T Consensus 188 ~AayLI~~Gms 198 (241)
T PTZ00393 188 ASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHcCCC
Confidence 66677666763
No 86
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=41.09 E-value=46 Score=31.10 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=19.4
Q ss_pred CCCCeEEEEeCCCc-hHHHHHH--HHHHcCCC
Q 013494 204 PENTTLFILDKFDG-NSELVAE--LVTINGFK 232 (442)
Q Consensus 204 ~KdkpIVV~C~sG~-RS~~AA~--~L~k~GFk 232 (442)
.++++|+|.|..|. ||....- .|...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 45679999999994 7764333 55554443
No 87
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.31 E-value=31 Score=29.78 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=23.2
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 013494 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (442)
Q Consensus 208 pIVV~C~sG~RS~~AA~~L~----k~GFknVy~L~GGi 241 (442)
+|+++|.+|..|..+++.++ +.|+. +.....++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~ 38 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAY 38 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeH
Confidence 48999999998888887765 45773 44444444
No 88
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=39.01 E-value=47 Score=28.14 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.7
Q ss_pred hhHHHHHhhhcCCCCCCeEEEEeCCCchH-HHHHHHHHHcCCC
Q 013494 191 PGFLKKLSLKFKEPENTTLFILDKFDGNS-ELVAELVTINGFK 232 (442)
Q Consensus 191 ~~fl~eL~a~lk~~KdkpIVV~C~sG~RS-~~AA~~L~k~GFk 232 (442)
.++++.|.. .+++++++-+++.++ ...++.|+++||.
T Consensus 20 ~e~l~~L~~-----~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRE-----RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHH-----TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHH-----cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 456677753 478999999999988 7889999999995
No 89
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=38.62 E-value=34 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=20.1
Q ss_pred CeEEEEeCCCchHHHHHHHHHH----cCCC
Q 013494 207 TTLFILDKFDGNSELVAELVTI----NGFK 232 (442)
Q Consensus 207 kpIVV~C~sG~RS~~AA~~L~k----~GFk 232 (442)
++|+++|.+|..|..+++.+++ +|+.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 3699999999988887777654 5663
No 90
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=37.44 E-value=47 Score=29.15 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=25.9
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
|+++|... .||..|..+|++..=.++.+..-|+
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~ 34 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGT 34 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcc
Confidence 57889655 5899999999887534577788888
No 91
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=37.23 E-value=48 Score=37.13 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=37.2
Q ss_pred HHHHhhhcCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 194 LKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 194 l~eL~a~lk~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
...|...++..-+.||||+.+.-..+...|+.|.++|| +||.|-||=
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 33443333334578999999999999999999999998 799999986
No 92
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=36.84 E-value=1.5e+02 Score=24.55 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.2
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhhcccCchhhHHHHHhhc
Q 013494 313 ALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 356 (442)
Q Consensus 313 al~~~l~~kl~~~~~rk~t~~~~~~~~~~~ia~~~~~~~~~~~~ 356 (442)
+++..++-|+.+++.||+.+. ||- ..-++.+--|++++-|
T Consensus 26 sl~~~~~~k~~~~~pRK~aYa---dFY-knYD~~kdFerM~~~G 65 (70)
T cd00927 26 SLGAAAAYKFLVNEPRKKAYA---DFY-KTYDAMKDFERMRKAG 65 (70)
T ss_pred HHHHHHHHHHHHhhHHHHHHH---HHH-HccChHHHHHHHHHcC
Confidence 344444448889999999775 342 3344555557777665
No 93
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=36.40 E-value=42 Score=29.10 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=18.4
Q ss_pred CeEEEEeCCCchHHHHHHHHHH
Q 013494 207 TTLFILDKFDGNSELVAELVTI 228 (442)
Q Consensus 207 kpIVV~C~sG~RS~~AA~~L~k 228 (442)
++|+++|..|..|...++.++.
T Consensus 4 kkIllvC~~G~sTSll~~km~~ 25 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRA 25 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 5899999999999888866554
No 94
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=36.11 E-value=1.1e+02 Score=26.47 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhc-chhhHHHHHHHHHHHhhcccCchhhHHHHHhhccccccC
Q 013494 309 LGSAALVQFASKKLL-FAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPS 362 (442)
Q Consensus 309 ~Gt~al~~~l~~kl~-~~~~rk~t~~~~~~~~~~~ia~~~~~~~~~~~~~~ll~~ 362 (442)
|+..++..|=.+||+ ..|+--+++++.|+ +.+|+-||.++-....-|.
T Consensus 12 Ilvi~LllFGpkKLPel~r~lGk~ir~fK~------a~~~~~~e~~~~~~~~~~~ 60 (92)
T PRK00575 12 LAVVVILLFGAKKLPDAARSLGKSLRIFKS------EVKEMQSDNKAEASAAAAQ 60 (92)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHH------HHhhhhhcccccccccccc
Confidence 444455555556665 33444445544444 2344455555444333333
No 95
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=35.73 E-value=36 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=15.4
Q ss_pred eEEEEeCCC-chHHHHHHHHHH
Q 013494 208 TLFILDKFD-GNSELVAELVTI 228 (442)
Q Consensus 208 pIVV~C~sG-~RS~~AA~~L~k 228 (442)
+|+++|.+| ..|..+.+.|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 489999999 566666666654
No 96
>PRK12361 hypothetical protein; Provisional
Probab=35.61 E-value=75 Score=34.72 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=41.1
Q ss_pred cCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCCCCCCCcEEeccCCCCChhHHHHHhh---hc--CCCCCCeEEEEe
Q 013494 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KF--KEPENTTLFILD 213 (442)
Q Consensus 139 ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a---~l--k~~KdkpIVV~C 213 (442)
.++.+...+.+ .+=..+||+|.+.+....... .....-+++|+.+...+. .+++.+ .+ ....+++|+|+|
T Consensus 108 ~~a~d~~~L~~-~gI~~Vldlt~E~~~~~~~~~---~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC 182 (547)
T PRK12361 108 LFPADLEKLKS-NKITAILDVTAEFDGLDWSLT---EEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHC 182 (547)
T ss_pred CCcccHHHHHH-cCCCEEEEccccccccccccc---ccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 45555444432 444678999954332100000 001146788876522221 122221 11 123568999999
Q ss_pred CCCc-hHHH-HHHHHH
Q 013494 214 KFDG-NSEL-VAELVT 227 (442)
Q Consensus 214 ~sG~-RS~~-AA~~L~ 227 (442)
..|. ||.. ++.+|-
T Consensus 183 ~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 183 ALGRGRSVLVLAAYLL 198 (547)
T ss_pred CCCCCcHHHHHHHHHH
Confidence 9995 5553 444444
No 97
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=35.59 E-value=16 Score=34.24 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHhhhhCHHHHHHHHHHHHHH-HHHH-HhhcCCCCCcccCHHHHHHHhcCCCCceEEecCChhhhhhcCCCCCC
Q 013494 103 ISFGTENPLAIAGGVTILAVP-LVLS-QVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR 174 (442)
Q Consensus 103 i~Fi~~npvlva~~v~~lvl~-~~l~-~~l~~~~~~g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~Ghp~L~ 174 (442)
.+|+.+||.+.++..++.+.. .+++ .+..+ ++.+-.-.+.-.+- ....+.||++..-|+..|.-+||
T Consensus 29 ~~Fi~~HP~L~~~M~~~y~~~~~lm~~spy~G---~~s~~~ftv~fv~m--~~~llfDI~P~YrfEDIdvLDLR 97 (155)
T PF10777_consen 29 SSFIRNHPYLCLAMYAAYLAVAALMYYSPYFG---LGSVWGFTVFFVVM--AAFLLFDIKPRYRFEDIDVLDLR 97 (155)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhcchhh---hHHHHHHHHHHHHH--HHHHHhhccceeeecccCeeEEe
Confidence 478999999998866553222 2111 11121 22222222222222 25788999999999977776643
No 98
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.21 E-value=48 Score=26.68 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=17.4
Q ss_pred eEEEEeCCCchHHHHH-HH----HHHcCCC
Q 013494 208 TLFILDKFDGNSELVA-EL----VTINGFK 232 (442)
Q Consensus 208 pIVV~C~sG~RS~~AA-~~----L~k~GFk 232 (442)
+|+++|.+|..+...+ +. +.++|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999997655444 44 5566864
No 99
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.77 E-value=40 Score=28.47 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=22.4
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 013494 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (442)
Q Consensus 208 pIVV~C~sG~RS~~AA~~L~----k~GFknVy~L~GGi 241 (442)
+|+++|.+|..|...++.++ ++|+. +.+-..++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~ 37 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPE 37 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 48999999998877776654 45764 43344444
No 100
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=34.29 E-value=91 Score=32.10 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=45.8
Q ss_pred cccCHHHHHHHhcCCCCceEEecCChhhhhhc--CCCCCCCCCCCcEEeccCCCCChhHHHHHhhhc-CCCCCCeEEEEe
Q 013494 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQV--GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF-KEPENTTLFILD 213 (442)
Q Consensus 137 g~ISp~EA~elLn~~~~avLIDVRt~~Ef~~~--Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~l-k~~KdkpIVV~C 213 (442)
..+...++.+.+. ..+..+||+|+..+|... ||+.+ + .-| + ...|...|...+ +.+.+++|++-|
T Consensus 136 tg~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~~-----~--~qp-s---q~~fe~~L~~~l~~~~~~~~i~~e~ 203 (311)
T TIGR03167 136 TGSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALGL-----G--PQP-S---QKRFENALAEALRRLDPGRPIFVED 203 (311)
T ss_pred CCcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCCC-----C--CCC-c---hHHHHHHHHHHHHhCCCCceEEEEe
Confidence 3477788888886 567899999999999841 33310 1 012 1 234555554333 346678999999
Q ss_pred CCCchHH
Q 013494 214 KFDGNSE 220 (442)
Q Consensus 214 ~sG~RS~ 220 (442)
.+.....
T Consensus 204 es~~ig~ 210 (311)
T TIGR03167 204 ESRRIGR 210 (311)
T ss_pred Cchhhcc
Confidence 9875543
No 101
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=33.71 E-value=70 Score=30.59 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=27.5
Q ss_pred hHHHHHhhhcCCCCCCeEEEEeCCCc------------------hHHHHHHHHHHcCCCcEEEcCC
Q 013494 192 GFLKKLSLKFKEPENTTLFILDKFDG------------------NSELVAELVTINGFKNAYTIKD 239 (442)
Q Consensus 192 ~fl~eL~a~lk~~KdkpIVV~C~sG~------------------RS~~AA~~L~k~GFknVy~L~G 239 (442)
.|++.|++ ..+++|||++-.... --..+.+.|++.|.+|+|.+.|
T Consensus 82 ~fv~~iR~---~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 82 GFVKTIRE---AHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHT---T-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHH---hCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 46666653 567899999883321 1345677788889999999975
No 102
>PRK10126 tyrosine phosphatase; Provisional
Probab=32.33 E-value=61 Score=29.17 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=26.2
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 207 kpIVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
++|+++|... .||..|..+|++.+ .++.+-.-|+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~ 37 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGL 37 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeec
Confidence 5799999755 58999999999876 3455567777
No 103
>PHA01399 membrane protein P6
Probab=31.94 E-value=64 Score=31.63 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=32.8
Q ss_pred hhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHHHHHH
Q 013494 74 QALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTIL 120 (442)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~m~~ii~Fi~~npvlva~~v~~l 120 (442)
.+...-|++|..-|.+++ .+..+-+|+.+||-+++++.+++
T Consensus 143 ~a~a~weaakelgsaagg------v~~g~wdfik~npel~agg~a~~ 183 (242)
T PHA01399 143 AADAAWEAAKELGSAAGG------VIGGIWDFIKDNPELIAGGAAAA 183 (242)
T ss_pred hhhHHHHHHHHhhhhccc------hhhhHHHHhccCHHHHhhhHHHH
Confidence 345568999998887644 48888999999999999987764
No 104
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=31.33 E-value=58 Score=28.75 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=27.0
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCC-cEEEcCCCC
Q 013494 208 TLFILDKFD-GNSELVAELVTINGFK-NAYTIKDGA 241 (442)
Q Consensus 208 pIVV~C~sG-~RS~~AA~~L~k~GFk-nVy~L~GGi 241 (442)
+|+++|... .||..|..+|++..-+ ++.+...|+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~ 37 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGT 37 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCC
Confidence 699999655 5899999999887543 677788888
No 105
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=30.77 E-value=62 Score=33.42 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=18.7
Q ss_pred ccCHHHHHHHhcCCCCceEEecCCh
Q 013494 138 VESARNAYAKLGDDASAQLLDIRAP 162 (442)
Q Consensus 138 ~ISp~EA~elLn~~~~avLIDVRt~ 162 (442)
.+++..+.+.+. .++.+++|-|+.
T Consensus 5 ~~s~~wlnr~l~-~~nllllDCRse 28 (343)
T KOG1717|consen 5 SKSVAWLNRQLE-LGNLLLLDCRSE 28 (343)
T ss_pred HHHHHHHHhhcc-cCceEEEecCCc
Confidence 367777777774 678999999993
No 106
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=30.67 E-value=1.1e+02 Score=34.33 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 013494 329 KQTLQQVDEFL 339 (442)
Q Consensus 329 k~t~~~~~~~~ 339 (442)
+..||+-+|+|
T Consensus 248 k~ALq~YqELL 258 (574)
T PF07462_consen 248 KEALQAYQELL 258 (574)
T ss_pred HHHHHHHHHhC
Confidence 44555555554
No 107
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=1.1e+02 Score=29.79 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCCcEEEcCCC
Q 013494 206 NTTLFILDKFDGN---SELVAELVTINGFKNAYTIKDG 240 (442)
Q Consensus 206 dkpIVV~C~sG~R---S~~AA~~L~k~GFknVy~L~GG 240 (442)
..+|+|+|-.|++ ...+|+.|...|+.-..++.|.
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~ 86 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGD 86 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCC
Confidence 5789999988865 7899999999998533344443
No 108
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=29.70 E-value=67 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=20.6
Q ss_pred eEEEEeCCCch-HHHHHH----HHHHcCCCcEEEcCCCC
Q 013494 208 TLFILDKFDGN-SELVAE----LVTINGFKNAYTIKDGA 241 (442)
Q Consensus 208 pIVV~C~sG~R-S~~AA~----~L~k~GFknVy~L~GGi 241 (442)
+|+++|.+|.. |..++. .|.+.|+. +-+....+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~ 41 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRV 41 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecH
Confidence 69999999985 444344 45667884 33333344
No 109
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=29.63 E-value=71 Score=31.16 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=23.5
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCCcEEEc
Q 013494 208 TLFILDKFD-GNSELVAELVTINGFKNAYTI 237 (442)
Q Consensus 208 pIVV~C~sG-~RS~~AA~~L~k~GFknVy~L 237 (442)
.+-++|.+. +||..|-..|++.|| +|...
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 578899888 489999999999999 56555
No 110
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=29.48 E-value=82 Score=28.46 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.6
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 207 kpIVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
++|+++|... .||..|..+|++.+ .++.+-..|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~ 37 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGV 37 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccc
Confidence 4799999654 68999999998864 2355667787
No 111
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.82 E-value=66 Score=26.81 Aligned_cols=36 Identities=14% Similarity=0.420 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHH
Q 013494 93 VDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQ 128 (442)
Q Consensus 93 ~~~~~~m~~ii~Fi~~npvlva~~v~~lvl~~~l~~ 128 (442)
+|..+-.+.+++|+.+||.=++..+.++..++++..
T Consensus 2 ~D~k~w~~~~v~~vAkdP~~Fl~~vll~LtPlfiis 37 (74)
T PF15086_consen 2 IDVKAWASYIVEWVAKDPYEFLTTVLLILTPLFIIS 37 (74)
T ss_pred cchHHHHHHHHHHHHcChHHHHHHHHHHHhHHHHHH
Confidence 466777888899999999877766555555554443
No 112
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=28.31 E-value=78 Score=31.46 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCC
Q 013494 206 NTTLFILDKFDG---NSELVAELVTINGFK 232 (442)
Q Consensus 206 dkpIVV~C~sG~---RS~~AA~~L~k~GFk 232 (442)
.++|+|+|-.|+ ....+|+.|...||+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe
Confidence 368999998665 578999999999995
No 113
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=28.23 E-value=94 Score=25.56 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 205 KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
.+.+++|+|.+-.......+.|.+.++ +++.+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999999999999999998776 588888887
No 114
>PRK13530 arsenate reductase; Provisional
Probab=28.01 E-value=97 Score=27.60 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=27.1
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCc
Q 013494 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAE 242 (442)
Q Consensus 207 kpIVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGie 242 (442)
++|+++|... .||..|..++++++=.++.....|++
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5799999655 58999999888764345666788873
No 115
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.98 E-value=1.2e+02 Score=30.56 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred CcccCHHHHHHHhcCCCCc-----eEEecCChhhhhhcC------CCCCCCCCCCcEEeccCCC--CChhHHHHHhhhc-
Q 013494 136 WGVESARNAYAKLGDDASA-----QLLDIRAPVEFRQVG------SPDVRGLGKRPVSIVYKGD--DKPGFLKKLSLKF- 201 (442)
Q Consensus 136 ~g~ISp~EA~elLn~~~~a-----vLIDVRt~~Ef~~~G------hp~L~~~~kgAinIPl~e~--~~~~fl~eL~a~l- 201 (442)
.--=||.+|...+.+ +++ +-+-|=+-.||++.- ..++.+ =-+..|+-.. +-..+++.++..+
T Consensus 57 i~~dTP~~aL~klk~-~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~---lkig~PlLy~k~DYe~~v~aik~~~p 132 (265)
T COG4822 57 IDFDTPIQALNKLKD-QGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKR---LKIGRPLLYYKNDYEICVEAIKDQIP 132 (265)
T ss_pred cccCCHHHHHHHHHH-ccchheeeeeeeecCchHHHHHHHHHHHHhhhhhe---eecCCceeechhhHHHHHHHHHHhcC
Confidence 444588888888863 322 225566667776420 011111 1122232111 1123455555444
Q ss_pred CCCCCCeEEEEeCCCchHHHHHH-----HHHHcCCCcEEEc
Q 013494 202 KEPENTTLFILDKFDGNSELVAE-----LVTINGFKNAYTI 237 (442)
Q Consensus 202 k~~KdkpIVV~C~sG~RS~~AA~-----~L~k~GFknVy~L 237 (442)
...++.-+|++|.+......++- .|.+.||.+||+.
T Consensus 133 pl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 133 PLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred CcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 35688899999997765444433 4678899999865
No 116
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=27.22 E-value=2.7e+02 Score=23.04 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=21.0
Q ss_pred hhcchhhHHHHHHHHHHHhhcccCchhhHHHHHhhc
Q 013494 321 KLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 356 (442)
Q Consensus 321 kl~~~~~rk~t~~~~~~~~~~~ia~~~~~~~~~~~~ 356 (442)
|+.+++.||+.+. ||. ..-++.+-.+|+++-|
T Consensus 36 kf~v~~pRKk~Ya---dFY-knYD~~k~fe~M~~~G 67 (73)
T PF02937_consen 36 KFGVAEPRKKAYA---DFY-KNYDPMKDFEEMRKAG 67 (73)
T ss_dssp HHHTHHHHHHHHH---HHH-HT--HHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHH---HHH-HccChHHHHHHHHhcC
Confidence 7779999999875 453 3345556667777655
No 117
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.48 E-value=4.6e+02 Score=31.14 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=21.6
Q ss_pred hhhhHHHHHhhhhcCCCCCCchhHHHHHHHHhhhhCHHHHHHH
Q 013494 74 QALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGG 116 (442)
Q Consensus 74 ~~~~~~e~~~~~~~~~~~~~~~~~~m~~ii~Fi~~npvlva~~ 116 (442)
.+..|++-++.-+++ -.+-++++.+--=+..||+-++.-
T Consensus 141 ~s~eyV~~l~~gl~t----~~l~~CleslRVsL~~npVSwvn~ 179 (1102)
T KOG1924|consen 141 SSPEYVVELRSGLST----KKLLECLESLRVSLTSNPVSWVNK 179 (1102)
T ss_pred CChHHHHHHHccccc----ccHHHHHHHHhhhhcCCccHHHHH
Confidence 344556655555333 345556666655566777766553
No 118
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=26.24 E-value=89 Score=29.03 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCCCCeEEEEeCCCc--hHHHHHHHHHH---cCCCcEEEcCCCCcCh
Q 013494 203 EPENTTLFILDKFDG--NSELVAELVTI---NGFKNAYTIKDGAEGP 244 (442)
Q Consensus 203 ~~KdkpIVV~C~sG~--RS~~AA~~L~k---~GFknVy~L~GGieG~ 244 (442)
.+++..+|++|..|. .|...|++|.+ .|..++..+-||-.|-
T Consensus 64 i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 64 IPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp SHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred ccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 357788999999996 58999999887 5888999999999544
No 119
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.46 E-value=81 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 205 KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
.+.||+++. +.-.....+.|++.+.+++|.+ ||.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 356776666 4455888899999999999988 765
No 120
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.83 E-value=1.4e+02 Score=31.24 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=32.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCc
Q 013494 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAE 242 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGie 242 (442)
.....++|+|++-.++...++.|.+.|+ ++..+.|++.
T Consensus 253 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~ 290 (423)
T PRK04837 253 EWPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVA 290 (423)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCC
Confidence 4457899999999999999999999999 5778888874
No 121
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=23.86 E-value=2.1e+02 Score=32.05 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCCcEEEcCCCCcCh------hhHHhCCCCc
Q 013494 206 NTTLFILDKFDGN---SELVAELVTINGFKNAYTIKDGAEGP------RGWMNSGLPW 254 (442)
Q Consensus 206 dkpIVV~C~sG~R---S~~AA~~L~k~GFknVy~L~GGieG~------~gW~~aGLPv 254 (442)
.++|+|+|-.|+. ...+|+.|...||+-...+.+...+. ..|+..|.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 4689999988865 66899999999996322223332221 3466666554
No 122
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.85 E-value=1.2e+02 Score=33.61 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCc
Q 013494 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAE 242 (442)
Q Consensus 203 ~~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGie 242 (442)
..++.+++|+|++-..+...++.|.+.|| ++..+.|++.
T Consensus 254 ~~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 254 RSEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred cccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 34567899999999999999999999999 5888888873
No 123
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=23.57 E-value=1.5e+02 Score=24.88 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.5
Q ss_pred CCCCeEEEEe---CCCchHHHHHHHHHHcCCCcEEE
Q 013494 204 PENTTLFILD---KFDGNSELVAELVTINGFKNAYT 236 (442)
Q Consensus 204 ~KdkpIVV~C---~sG~RS~~AA~~L~k~GFknVy~ 236 (442)
.++++|+|++ .+|..-..+++.|++.|.+.+..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 3578888865 89999999999999999987653
No 124
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.16 E-value=2e+02 Score=25.78 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=31.3
Q ss_pred CCeEEEEeCCCch----HHHHHHHHHHcCCCcEEEcCCCCcCh---hhHHhCCCC
Q 013494 206 NTTLFILDKFDGN----SELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLP 253 (442)
Q Consensus 206 dkpIVV~C~sG~R----S~~AA~~L~k~GFknVy~L~GGieG~---~gW~~aGLP 253 (442)
+-.+|++|..... -....+.|++.|..++.++-||.... ..|++.|..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 5678888886643 44667778888877777778886333 344455543
No 125
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.48 E-value=1.5e+02 Score=26.20 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcC
Q 013494 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIK 238 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~ 238 (442)
-++++++|+-. |.-+..++..|.+.|+++++.+.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 35677777765 88899999999999999888764
No 126
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=22.37 E-value=1.8e+02 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.0
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCc
Q 013494 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAE 242 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGie 242 (442)
....+++|+|++-.++...++.|.+.|+ ++..+.|++.
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~ 280 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMV 280 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 3567899999999999999999999998 5778889883
No 127
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=22.37 E-value=1e+02 Score=34.81 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=41.5
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcCh------hhHHhCCCCcc
Q 013494 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP------RGWMNSGLPWI 255 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~------~gW~~aGLPvv 255 (442)
..+..-||||.+=..++..+++|.+.|++ +..+-||++-. +.|.....++.
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~~~eR~~~q~~f~~~~~~ii 284 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLSNEERERVQQAFLNDEIKVM 284 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCCHHHHHHHHHHHhcCCCcEE
Confidence 45677899999999999999999999994 66677888554 67887777754
No 128
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=22.23 E-value=1.2e+02 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHc
Q 013494 204 PENTTLFILDKFDGNSELVAELVTIN 229 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~ 229 (442)
..|.+|+++|+++..+....+.|+++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~l 70 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKEL 70 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHTT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 45789999999999999999988763
No 129
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=21.90 E-value=89 Score=32.40 Aligned_cols=36 Identities=17% Similarity=-0.030 Sum_probs=28.2
Q ss_pred CcccCHHHHHHHhc-C----CCCceEEecCChhhhhhcCCCC
Q 013494 136 WGVESARNAYAKLG-D----DASAQLLDIRAPVEFRQVGSPD 172 (442)
Q Consensus 136 ~g~ISp~EA~elLn-~----~~~avLIDVRt~~Ef~~~Ghp~ 172 (442)
...+++++..+++. . +.+.++||||++. |+...+++
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 45699999998883 2 3588999999998 98755665
No 130
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=21.83 E-value=97 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=16.7
Q ss_pred CeEEEEeCCCchHH-HHHHH----HHHcCC
Q 013494 207 TTLFILDKFDGNSE-LVAEL----VTINGF 231 (442)
Q Consensus 207 kpIVV~C~sG~RS~-~AA~~----L~k~GF 231 (442)
.+|+++|.+|..+. ..... +.+.|+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 36999999998644 44444 445566
No 131
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=21.70 E-value=2.8e+02 Score=24.88 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHhhhcCCCCCCeEEEEeCCCchHHH---HHHHHHHcCCCcEEEcC
Q 013494 193 FLKKLSLKFKEPENTTLFILDKFDGNSEL---VAELVTINGFKNAYTIK 238 (442)
Q Consensus 193 fl~eL~a~lk~~KdkpIVV~C~sG~RS~~---AA~~L~k~GFknVy~L~ 238 (442)
+...+......+++.+|++.+..+..-.. +-..++++||+++-...
T Consensus 86 L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 86 MITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33444433334567889999988876554 55567889999886543
No 132
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=21.65 E-value=1.2e+02 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=28.8
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 207 kpIVV~C~sG-~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
.+|+++|... .||..|-.++++..=.++.+...|.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt 38 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGT 38 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCcc
Confidence 5799999866 5899999999987447788888896
No 133
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=21.53 E-value=1.7e+02 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.1
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCC
Q 013494 206 NTTLFILDKFDGN---SELVAELVTINGFK 232 (442)
Q Consensus 206 dkpIVV~C~sG~R---S~~AA~~L~k~GFk 232 (442)
.++|+|+|-.|+. ...+|+.|...||+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~ 88 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK 88 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc
Confidence 3689999988865 67899999999996
No 134
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.41 E-value=96 Score=27.39 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=19.5
Q ss_pred CeEEEEeCCCchHHHHHHHHHHc
Q 013494 207 TTLFILDKFDGNSELVAELVTIN 229 (442)
Q Consensus 207 kpIVV~C~sG~RS~~AA~~L~k~ 229 (442)
++|.++|..|..+...++.+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 57999999999988888877764
No 135
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=96 Score=30.50 Aligned_cols=39 Identities=18% Similarity=0.459 Sum_probs=26.8
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCCcEEEcC-CCCcChhhHHh
Q 013494 208 TLFILDKFDGNSELVAELVTINGFKNAYTIK-DGAEGPRGWMN 249 (442)
Q Consensus 208 pIVV~C~sG~RS~~AA~~L~k~GFknVy~L~-GGieG~~gW~~ 249 (442)
.|+-+-+.+.-...|-+.|..+||.||.+.. +|. .||.+
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---~G~~~ 135 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---KGWPE 135 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---cCCCC
Confidence 4555555555566677789999998876554 455 77866
No 136
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.08 E-value=1.1e+02 Score=25.01 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=16.8
Q ss_pred CeEEEEeCCCchHH-HHHH----HHHHcCCC
Q 013494 207 TTLFILDKFDGNSE-LVAE----LVTINGFK 232 (442)
Q Consensus 207 kpIVV~C~sG~RS~-~AA~----~L~k~GFk 232 (442)
++|+++|.+|.-+. .++. .+.+.|..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 36999999998654 3343 44555653
No 137
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.98 E-value=81 Score=29.88 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh--cC----CCCCcccCHH----HHHHHhc--CCCCceEEecCCh
Q 013494 109 NPLAIAGGVTILAVPLVLSQVL--NK----PKSWGVESAR----NAYAKLG--DDASAQLLDIRAP 162 (442)
Q Consensus 109 npvlva~~v~~lvl~~~l~~~l--~~----~~~~g~ISp~----EA~elLn--~~~~avLIDVRt~ 162 (442)
.-++++.++.++++.|++++.+ ++ ...||.++.. |..-+.. +++|..+.|++.+
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL~~ddedeD~TvFd~~~~ 161 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPLEEDDEDEDSTVFDANHP 161 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceecccCCCccccccceeeeccc
Confidence 3345555555555555545443 11 1246666644 2222222 1344577777654
No 138
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=20.49 E-value=1.7e+02 Score=30.94 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCcCh
Q 013494 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP 244 (442)
Q Consensus 204 ~KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGieG~ 244 (442)
.....++|+|++-..+...++.|.+.|+ ++..+-|++...
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~~~ 279 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLEQR 279 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHH
Confidence 3456899999999999999999999998 577788888433
No 139
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.40 E-value=7.9e+02 Score=27.35 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=8.9
Q ss_pred hHHHHHhhhhccceeeee
Q 013494 48 NFLECFAKSVHGGLVLLS 65 (442)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~ 65 (442)
.|+.++..+-.+..||..
T Consensus 27 ~L~~~i~~~~i~~a~Lf~ 44 (585)
T PRK14950 27 TLRNAIAEGRVAHAYLFT 44 (585)
T ss_pred HHHHHHHhCCCceEEEEE
Confidence 345555544444445554
No 140
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=20.21 E-value=6.8e+02 Score=25.96 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHhcCCCCceEEecCChhhhh-hcCCCCCCCCCCCcEEeccCCCCChhHHHHHhhhcCCCCCCeE-EEEeCCCch---H
Q 013494 145 YAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTL-FILDKFDGN---S 219 (442)
Q Consensus 145 ~elLn~~~~avLIDVRt~~Ef~-~~Ghp~L~~~~kgAinIPl~e~~~~~fl~eL~a~lk~~KdkpI-VV~C~sG~R---S 219 (442)
++.+.+..+..+|..=...|-. ..|+|. ...|..++ ...+.+.++. .+++++| +++...|++ +
T Consensus 40 i~~ie~kr~srvI~~Ihrqe~~~~~giPi-------~~~I~i~d--se~v~raI~~---~~~~~~IdLii~TpGG~v~AA 107 (285)
T PF01972_consen 40 IREIEEKRGSRVITLIHRQERVSFLGIPI-------YRYIDIDD--SEFVLRAIRE---APKDKPIDLIIHTPGGLVDAA 107 (285)
T ss_pred HHHHHHHhCCEEEEEEEeccccceecccc-------ceeEcHhh--HHHHHHHHHh---cCCCCceEEEEECCCCcHHHH
Confidence 3344334456666655544432 235552 22333321 2234444432 2444444 445555654 6
Q ss_pred HHHHHHHHHcCCCcEEEc
Q 013494 220 ELVAELVTINGFKNAYTI 237 (442)
Q Consensus 220 ~~AA~~L~k~GFknVy~L 237 (442)
.+.++.|++.- .++.++
T Consensus 108 ~~I~~~l~~~~-~~v~v~ 124 (285)
T PF01972_consen 108 EQIARALREHP-AKVTVI 124 (285)
T ss_pred HHHHHHHHhCC-CCEEEE
Confidence 67777788753 344433
No 141
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=1.8e+02 Score=31.73 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013494 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (442)
Q Consensus 205 KdkpIVV~C~sG~RS~~AA~~L~k~GFknVy~L~GGi 241 (442)
....+||+|++-.+....+..|...|| ++..|-|++
T Consensus 272 ~~~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l 307 (513)
T COG0513 272 DEGRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDL 307 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCC
Confidence 334699999999999999999999999 588999997
Done!