Query 013495
Match_columns 442
No_of_seqs 381 out of 2082
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 Electron transfer flav 100.0 3E-131 6E-136 969.0 34.0 437 4-442 174-621 (621)
2 COG0644 FixC Dehydrogenases (f 100.0 6E-43 1.3E-47 360.2 28.7 304 7-354 89-395 (396)
3 PRK10015 oxidoreductase; Provi 100.0 8E-43 1.7E-47 362.7 28.6 281 6-311 101-401 (429)
4 PRK10157 putative oxidoreducta 100.0 3.2E-40 6.9E-45 343.2 26.5 280 7-312 102-401 (428)
5 PF05187 ETF_QO: Electron tran 100.0 2.6E-42 5.7E-47 287.4 -0.1 109 289-397 1-109 (110)
6 PLN00093 geranylgeranyl diphos 100.0 6.5E-29 1.4E-33 259.6 28.6 248 9-287 128-385 (450)
7 TIGR02028 ChlP geranylgeranyl 100.0 1.1E-28 2.4E-33 254.4 29.1 248 9-287 89-346 (398)
8 TIGR02023 BchP-ChlP geranylger 100.0 1E-26 2.2E-31 238.8 29.0 244 9-286 88-335 (388)
9 TIGR02032 GG-red-SF geranylger 99.9 5.4E-22 1.2E-26 194.1 25.1 211 6-250 84-295 (295)
10 COG2440 FixX Ferredoxin-like p 99.9 1.2E-24 2.6E-29 174.6 4.4 81 352-440 16-97 (99)
11 PF04820 Trp_halogenase: Trypt 99.9 6.6E-21 1.4E-25 199.6 21.7 218 5-271 146-371 (454)
12 PRK11445 putative oxidoreducta 99.8 1.4E-18 3.1E-23 176.3 25.7 246 8-305 94-341 (351)
13 PRK15449 ferredoxin-like prote 99.8 4.4E-21 9.5E-26 156.2 3.1 80 352-441 14-94 (95)
14 PLN02697 lycopene epsilon cycl 99.8 2.4E-17 5.1E-22 175.0 29.0 241 7-284 185-452 (529)
15 TIGR01790 carotene-cycl lycope 99.8 8.4E-17 1.8E-21 164.9 29.2 231 9-278 81-325 (388)
16 PF01494 FAD_binding_3: FAD bi 99.8 9.2E-18 2E-22 167.8 17.5 235 7-270 105-348 (356)
17 PRK07045 putative monooxygenas 99.8 2.9E-16 6.3E-21 161.1 25.9 248 8-287 101-359 (388)
18 PLN02463 lycopene beta cyclase 99.8 2.7E-16 5.8E-21 164.3 25.5 211 9-256 110-334 (447)
19 PRK06185 hypothetical protein; 99.7 2.4E-16 5.2E-21 162.5 24.7 233 7-270 102-342 (407)
20 PRK09126 hypothetical protein; 99.7 2E-16 4.3E-21 162.3 21.9 244 7-287 104-356 (392)
21 TIGR01988 Ubi-OHases Ubiquinon 99.7 3.7E-16 8E-21 159.2 23.2 243 6-287 99-352 (385)
22 PRK07333 2-octaprenyl-6-methox 99.7 4.1E-16 8.9E-21 160.4 22.4 243 7-287 105-356 (403)
23 PRK06617 2-octaprenyl-6-methox 99.7 1.3E-15 2.8E-20 155.8 25.4 238 7-287 98-339 (374)
24 TIGR01984 UbiH 2-polyprenyl-6- 99.7 6.1E-16 1.3E-20 158.0 22.3 242 7-287 99-349 (382)
25 PRK07538 hypothetical protein; 99.7 5.8E-15 1.2E-19 152.9 27.0 242 7-281 96-361 (413)
26 PRK05732 2-octaprenyl-6-methox 99.7 5.2E-15 1.1E-19 151.7 25.5 242 7-287 106-358 (395)
27 PRK08013 oxidoreductase; Provi 99.7 5.1E-15 1.1E-19 152.8 24.5 244 7-287 105-358 (400)
28 PRK08020 ubiF 2-octaprenyl-3-m 99.7 7.7E-15 1.7E-19 150.5 24.6 227 7-270 106-341 (391)
29 PRK06753 hypothetical protein; 99.7 7.4E-15 1.6E-19 149.6 23.2 244 6-288 91-340 (373)
30 PRK08773 2-octaprenyl-3-methyl 99.7 1.2E-14 2.6E-19 149.4 24.1 227 7-270 107-342 (392)
31 PRK08244 hypothetical protein; 99.7 4.3E-14 9.4E-19 149.8 28.7 229 7-269 94-328 (493)
32 PRK08243 4-hydroxybenzoate 3-m 99.7 2.8E-14 6E-19 146.9 26.3 248 8-287 98-351 (392)
33 PRK07608 ubiquinone biosynthes 99.7 8.2E-15 1.8E-19 150.0 22.1 243 7-287 105-355 (388)
34 PRK07364 2-octaprenyl-6-methox 99.7 2.3E-14 4.9E-19 148.1 25.1 247 7-287 115-370 (415)
35 PRK05714 2-octaprenyl-3-methyl 99.7 2.6E-14 5.6E-19 147.5 24.4 242 7-287 106-361 (405)
36 TIGR01989 COQ6 Ubiquinone bios 99.6 5.7E-14 1.2E-18 146.8 26.7 250 7-287 111-409 (437)
37 PRK07588 hypothetical protein; 99.6 7.4E-14 1.6E-18 143.5 26.3 242 8-287 98-350 (391)
38 PRK07494 2-octaprenyl-6-methox 99.6 2.6E-14 5.7E-19 146.4 22.9 228 7-270 105-337 (388)
39 PRK06996 hypothetical protein; 99.6 1.4E-13 3E-18 142.1 26.1 246 7-287 109-361 (398)
40 PRK08163 salicylate hydroxylas 99.6 1E-13 2.2E-18 142.5 25.0 244 8-287 104-357 (396)
41 COG0654 UbiH 2-polyprenyl-6-me 99.6 2E-13 4.3E-18 140.4 27.1 246 6-286 97-350 (387)
42 PRK08850 2-octaprenyl-6-methox 99.6 6.7E-14 1.5E-18 144.6 23.1 243 7-287 105-358 (405)
43 PRK06183 mhpA 3-(3-hydroxyphen 99.6 5.4E-13 1.2E-17 143.0 25.6 245 8-286 108-358 (538)
44 PLN02985 squalene monooxygenas 99.6 1.1E-12 2.3E-17 139.8 26.7 227 7-270 141-386 (514)
45 PRK05868 hypothetical protein; 99.5 1.9E-12 4E-17 132.6 25.6 225 7-269 99-336 (372)
46 PRK08849 2-octaprenyl-3-methyl 99.5 2.3E-12 5E-17 132.2 25.8 241 7-287 104-350 (384)
47 PRK06847 hypothetical protein; 99.5 2.5E-12 5.5E-17 131.0 25.3 242 6-286 100-351 (375)
48 PRK08132 FAD-dependent oxidore 99.5 4E-12 8.6E-17 136.6 25.9 231 8-270 120-356 (547)
49 TIGR02360 pbenz_hydroxyl 4-hyd 99.5 2.7E-12 5.9E-17 132.2 23.3 245 10-287 100-351 (390)
50 PTZ00367 squalene epoxidase; P 99.5 3.1E-12 6.8E-17 137.3 24.4 222 7-252 125-373 (567)
51 PRK06184 hypothetical protein; 99.5 8.2E-12 1.8E-16 132.8 26.8 230 7-270 103-337 (502)
52 PRK06834 hypothetical protein; 99.5 2.7E-11 5.9E-16 128.4 27.4 222 7-269 94-321 (488)
53 PRK07190 hypothetical protein; 99.5 2.6E-11 5.6E-16 128.5 26.5 221 8-269 104-331 (487)
54 PRK06475 salicylate hydroxylas 99.5 1.8E-11 3.9E-16 126.3 24.7 230 8-270 102-345 (400)
55 PRK06126 hypothetical protein; 99.4 2.7E-11 5.9E-16 130.0 25.1 231 7-269 120-359 (545)
56 TIGR03219 salicylate_mono sali 99.4 2.1E-11 4.5E-16 126.4 20.7 247 8-287 100-374 (414)
57 PRK08294 phenol 2-monooxygenas 99.4 3.2E-10 7E-15 123.8 28.8 252 8-287 136-413 (634)
58 PF05834 Lycopene_cycl: Lycope 99.4 2.6E-10 5.6E-15 116.9 24.9 202 8-252 82-290 (374)
59 PRK07236 hypothetical protein; 99.3 6.5E-10 1.4E-14 114.2 21.4 60 211-270 300-360 (386)
60 PLN02927 antheraxanthin epoxid 99.2 5.1E-09 1.1E-13 113.9 24.7 225 7-270 188-431 (668)
61 TIGR01789 lycopene_cycl lycope 99.1 2.5E-08 5.4E-13 102.2 24.6 195 8-250 84-285 (370)
62 PF08491 SE: Squalene epoxidas 99.0 5.2E-08 1.1E-12 94.7 18.7 155 75-253 2-167 (276)
63 PRK08255 salicylyl-CoA 5-hydro 98.9 3.1E-08 6.6E-13 110.6 18.0 231 9-286 93-339 (765)
64 COG1143 NuoI Formate hydrogenl 98.9 5.9E-10 1.3E-14 101.3 2.4 57 367-429 53-115 (172)
65 COG1142 HycB Fe-S-cluster-cont 98.9 9.1E-10 2E-14 98.9 3.2 54 368-430 50-103 (165)
66 PF14697 Fer4_21: 4Fe-4S diclu 98.8 1.1E-09 2.4E-14 82.3 2.1 56 366-428 3-59 (59)
67 KOG1298 Squalene monooxygenase 98.8 8.9E-08 1.9E-12 95.7 14.7 216 11-268 145-374 (509)
68 PF13247 Fer4_11: 4Fe-4S diclu 98.8 1.5E-09 3.2E-14 90.0 1.8 59 368-433 6-64 (98)
69 COG1146 Ferredoxin [Energy pro 98.6 2.4E-08 5.2E-13 77.2 4.0 60 366-432 5-64 (68)
70 TIGR00292 thiazole biosynthesi 98.6 2.1E-07 4.5E-12 90.6 10.2 90 6-99 93-183 (254)
71 KOG2614 Kynurenine 3-monooxyge 98.6 3.2E-07 6.8E-12 93.0 11.7 53 212-264 284-337 (420)
72 PRK04176 ribulose-1,5-biphosph 98.6 2.6E-07 5.7E-12 90.0 10.5 87 5-95 96-182 (257)
73 TIGR03478 DMSO_red_II_bet DMSO 98.6 5.7E-08 1.2E-12 95.7 5.6 60 366-432 126-185 (321)
74 TIGR01660 narH nitrate reducta 98.5 1.3E-07 2.7E-12 96.9 6.8 62 363-431 175-236 (492)
75 PRK08348 NADH-plastoquinone ox 98.5 5.8E-08 1.3E-12 83.6 3.6 56 366-430 39-94 (120)
76 COG1144 Pyruvate:ferredoxin ox 98.5 6.2E-08 1.3E-12 77.4 3.1 58 365-431 31-88 (91)
77 COG2509 Uncharacterized FAD-de 98.5 9.4E-06 2E-10 83.3 19.4 87 13-121 173-260 (486)
78 COG0437 HybA Fe-S-cluster-cont 98.5 9.3E-08 2E-12 88.9 4.1 58 368-432 66-123 (203)
79 CHL00065 psaC photosystem I su 98.5 4E-08 8.7E-13 78.6 1.2 58 366-429 6-66 (81)
80 PRK09623 vorD 2-ketoisovalerat 98.5 1.6E-07 3.4E-12 79.0 4.5 55 365-429 47-101 (105)
81 PF13237 Fer4_10: 4Fe-4S diclu 98.4 9.6E-08 2.1E-12 69.6 2.4 49 365-422 3-52 (52)
82 TIGR02936 fdxN_nitrog ferredox 98.4 9.3E-08 2E-12 78.0 1.6 61 363-429 15-90 (91)
83 TIGR02060 aprB adenosine phosp 98.4 1.3E-07 2.8E-12 82.6 2.3 55 367-429 6-65 (132)
84 PF13187 Fer4_9: 4Fe-4S diclus 98.4 8.8E-08 1.9E-12 70.6 1.0 51 370-426 1-55 (55)
85 PF12838 Fer4_7: 4Fe-4S diclus 98.4 4.9E-08 1.1E-12 71.3 -0.6 50 370-425 1-52 (52)
86 PRK09626 oorD 2-oxoglutarate-a 98.4 2.6E-07 5.6E-12 77.5 3.7 63 362-430 9-74 (103)
87 TIGR01582 FDH-beta formate deh 98.4 3.2E-07 6.9E-12 90.2 4.8 63 361-431 82-146 (283)
88 TIGR03048 PS_I_psaC photosyste 98.4 1.5E-07 3.1E-12 75.2 1.9 61 365-431 4-67 (80)
89 PRK09624 porD pyuvate ferredox 98.4 2E-07 4.4E-12 78.4 2.6 54 366-429 48-101 (105)
90 PLN00071 photosystem I subunit 98.3 2E-07 4.4E-12 74.5 2.1 61 367-433 7-70 (81)
91 TIGR01944 rnfB electron transp 98.3 3.6E-07 7.9E-12 83.1 3.7 58 362-429 106-163 (165)
92 PF01266 DAO: FAD dependent ox 98.3 2.4E-05 5.3E-10 78.0 16.7 75 5-99 139-213 (358)
93 TIGR02179 PorD_KorD 2-oxoacid: 98.3 6.6E-07 1.4E-11 70.8 4.3 55 365-429 21-75 (78)
94 PRK08222 hydrogenase 4 subunit 98.3 3.1E-07 6.7E-12 84.8 2.7 57 367-429 36-93 (181)
95 TIGR02352 thiamin_ThiO glycine 98.3 3.4E-05 7.4E-10 77.0 17.6 194 7-251 131-334 (337)
96 PRK12387 formate hydrogenlyase 98.3 5E-07 1.1E-11 83.4 3.8 57 367-429 36-93 (180)
97 PRK09625 porD pyruvate flavodo 98.3 2.8E-07 6.1E-12 80.8 2.0 54 366-429 56-109 (133)
98 KOG3256 NADH:ubiquinone oxidor 98.3 2E-07 4.3E-12 82.3 0.8 54 368-427 110-168 (212)
99 PRK06273 ferredoxin; Provision 98.2 3.7E-07 8E-12 82.9 1.7 56 367-428 47-110 (165)
100 TIGR02494 PFLE_PFLC glycyl-rad 98.2 3.4E-07 7.5E-12 90.8 1.3 61 363-429 42-102 (295)
101 COG1245 Predicted ATPase, RNas 98.2 8.2E-07 1.8E-11 90.8 3.8 63 361-431 3-73 (591)
102 PRK02651 photosystem I subunit 98.2 6.2E-07 1.3E-11 71.6 2.3 62 361-429 2-66 (81)
103 PRK05888 NADH dehydrogenase su 98.2 1.3E-06 2.9E-11 79.4 4.4 57 367-429 56-117 (164)
104 TIGR00403 ndhI NADH-plastoquin 98.2 9.7E-07 2.1E-11 81.7 3.0 57 367-429 60-122 (183)
105 TIGR03149 cyt_nit_nrfC cytochr 98.2 1.2E-06 2.7E-11 83.7 3.8 58 366-430 89-146 (225)
106 PRK12771 putative glutamate sy 98.2 1.9E-06 4E-11 93.3 5.2 61 366-429 501-561 (564)
107 TIGR02163 napH_ ferredoxin-typ 98.1 1.2E-06 2.5E-11 85.4 2.9 59 363-429 195-254 (255)
108 PRK05113 electron transport co 98.1 1.1E-06 2.4E-11 81.8 2.5 57 363-429 108-164 (191)
109 PRK14993 tetrathionate reducta 98.1 1.7E-06 3.6E-11 83.7 3.2 57 367-431 96-152 (244)
110 KOG3855 Monooxygenase involved 98.1 3E-05 6.6E-10 78.6 12.1 222 7-256 144-410 (481)
111 COG1145 NapF Ferredoxin [Energ 98.1 1.5E-06 3.2E-11 71.4 2.4 60 365-430 25-84 (99)
112 PRK00711 D-amino acid dehydrog 98.1 0.0003 6.4E-09 72.8 20.0 71 9-99 197-267 (416)
113 PRK06991 ferredoxin; Provision 98.1 1.9E-06 4E-11 84.3 3.4 55 365-429 81-135 (270)
114 PRK07118 ferredoxin; Validated 98.1 2.2E-06 4.8E-11 84.4 3.6 56 367-433 211-266 (280)
115 TIGR01971 NuoI NADH-quinone ox 98.1 2.9E-06 6.3E-11 73.1 3.6 56 368-429 42-102 (122)
116 PRK08764 ferredoxin; Provision 98.1 2.4E-06 5.2E-11 75.2 3.1 58 362-429 78-135 (135)
117 TIGR00402 napF ferredoxin-type 98.1 2.3E-06 5E-11 71.5 2.6 53 367-427 32-84 (101)
118 PRK10330 formate dehydrogenase 98.0 2.6E-06 5.6E-11 78.7 3.0 53 368-429 55-107 (181)
119 PRK10194 ferredoxin-type prote 98.0 3.3E-06 7.2E-11 76.6 3.5 51 381-431 110-160 (163)
120 TIGR03224 benzo_boxA benzoyl-C 98.0 2.5E-06 5.5E-11 88.6 2.7 52 366-428 7-58 (411)
121 TIGR02066 dsrB sulfite reducta 98.0 1.7E-06 3.7E-11 87.5 0.8 47 380-427 186-232 (341)
122 PF01946 Thi4: Thi4 family; PD 98.0 2E-05 4.4E-10 74.1 7.8 92 3-98 86-177 (230)
123 TIGR03315 Se_ygfK putative sel 98.0 1.5E-05 3.2E-10 90.6 8.3 58 367-428 879-940 (1012)
124 PRK09898 hypothetical protein; 98.0 6E-06 1.3E-10 78.0 4.4 56 367-429 119-174 (208)
125 PRK10882 hydrogenase 2 protein 98.0 4.1E-06 9E-11 84.1 3.1 57 367-430 108-164 (328)
126 COG1149 MinD superfamily P-loo 98.0 3.2E-06 6.9E-11 81.5 2.2 56 366-431 66-121 (284)
127 PRK09477 napH quinol dehydroge 98.0 4.1E-06 8.9E-11 82.3 3.1 59 363-429 202-262 (271)
128 PF00037 Fer4: 4Fe-4S binding 98.0 3.8E-06 8.3E-11 51.3 1.8 24 404-427 1-24 (24)
129 TIGR01373 soxB sarcosine oxida 98.0 0.00089 1.9E-08 69.2 20.4 195 9-252 179-384 (407)
130 TIGR03294 FrhG coenzyme F420 h 98.0 1.4E-06 3.1E-11 83.3 -0.6 96 321-427 109-221 (228)
131 TIGR02700 flavo_MJ0208 archaeo 97.9 3.6E-06 7.7E-11 81.0 2.1 50 367-427 146-195 (234)
132 TIGR02951 DMSO_dmsB DMSO reduc 97.9 6.7E-06 1.5E-10 74.4 3.5 58 368-432 61-118 (161)
133 COG2768 Uncharacterized Fe-S c 97.9 3.8E-06 8.3E-11 81.5 1.9 51 367-429 191-243 (354)
134 TIGR02912 sulfite_red_C sulfit 97.9 4.3E-06 9.4E-11 83.9 2.1 50 367-427 167-219 (314)
135 PRK13409 putative ATPase RIL; 97.9 7.6E-06 1.6E-10 88.9 3.5 62 362-431 3-72 (590)
136 PRK09853 putative selenate red 97.8 4.4E-05 9.6E-10 86.6 8.9 56 367-425 884-942 (1019)
137 PF12837 Fer4_6: 4Fe-4S bindin 97.8 2.8E-06 6E-11 51.8 -0.4 23 404-426 2-24 (24)
138 CHL00014 ndhI NADH dehydrogena 97.8 7E-06 1.5E-10 74.8 2.0 57 367-429 57-119 (167)
139 PLN02612 phytoene desaturase 97.8 0.001 2.2E-08 72.2 18.7 57 13-84 308-364 (567)
140 TIGR03377 glycerol3P_GlpA glyc 97.8 0.0021 4.5E-08 68.9 20.9 78 8-99 123-200 (516)
141 PRK12769 putative oxidoreducta 97.8 1.4E-05 3E-10 88.1 4.0 55 367-430 52-106 (654)
142 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.0003 6.5E-09 72.1 13.6 63 7-87 129-191 (381)
143 PRK08318 dihydropyrimidine deh 97.8 1.5E-05 3.4E-10 83.1 4.1 58 366-431 339-400 (420)
144 TIGR02512 Fe_only_hydrog hydro 97.8 5.6E-06 1.2E-10 85.0 0.7 59 365-429 3-70 (374)
145 COG2221 DsrA Dissimilatory sul 97.8 6.6E-06 1.4E-10 80.8 0.9 45 367-422 170-214 (317)
146 PRK14028 pyruvate ferredoxin o 97.8 8.6E-06 1.9E-10 81.6 1.6 59 365-429 243-309 (312)
147 PRK09476 napG quinol dehydroge 97.7 2.3E-05 5.1E-10 76.2 3.7 70 365-440 133-220 (254)
148 TIGR03287 methan_mark_16 putat 97.7 1.8E-05 4E-10 80.5 2.8 52 366-431 299-352 (391)
149 TIGR00397 mauM_napG MauM/NapG 97.7 4E-05 8.7E-10 72.6 4.5 59 366-430 128-198 (213)
150 PRK10194 ferredoxin-type prote 97.7 1.3E-05 2.7E-10 72.9 0.9 57 366-429 63-124 (163)
151 PRK13795 hypothetical protein; 97.7 1.9E-05 4.2E-10 86.4 2.4 55 364-427 576-630 (636)
152 PRK12809 putative oxidoreducta 97.6 2.3E-05 5E-10 86.1 2.1 54 367-429 52-105 (639)
153 PRK13984 putative oxidoreducta 97.6 2.7E-05 5.8E-10 84.9 2.5 58 366-429 42-106 (604)
154 TIGR02176 pyruv_ox_red pyruvat 97.6 3E-05 6.6E-10 89.9 3.0 61 363-429 677-761 (1165)
155 TIGR00397 mauM_napG MauM/NapG 97.6 6.5E-05 1.4E-09 71.2 4.6 61 367-431 89-160 (213)
156 cd07030 RNAP_D D subunit of Ar 97.6 5.2E-05 1.1E-09 74.1 3.9 56 368-433 168-223 (259)
157 PF12797 Fer4_2: 4Fe-4S bindin 97.6 2.1E-05 4.6E-10 46.5 0.7 20 403-422 2-21 (22)
158 PRK09898 hypothetical protein; 97.6 3.5E-05 7.7E-10 72.7 2.6 54 364-430 149-202 (208)
159 PRK12409 D-amino acid dehydrog 97.6 0.0061 1.3E-07 63.0 19.4 66 10-87 194-259 (410)
160 PRK00783 DNA-directed RNA poly 97.6 5.4E-05 1.2E-09 74.1 3.5 57 362-430 164-220 (263)
161 PRK11101 glpA sn-glycerol-3-ph 97.5 0.013 2.8E-07 63.3 21.5 77 9-99 145-221 (546)
162 COG1635 THI4 Ribulose 1,5-bisp 97.5 0.00063 1.4E-08 64.0 9.7 86 3-92 99-184 (262)
163 PRK13369 glycerol-3-phosphate 97.5 0.034 7.3E-07 59.4 23.8 66 9-87 151-216 (502)
164 PRK07233 hypothetical protein; 97.5 0.011 2.4E-07 61.0 19.7 56 13-85 198-253 (434)
165 PLN02464 glycerol-3-phosphate 97.5 0.027 5.9E-07 61.9 23.5 69 9-87 228-297 (627)
166 PRK07569 bidirectional hydroge 97.5 6.4E-05 1.4E-09 72.3 2.5 59 365-429 142-210 (234)
167 PRK07118 ferredoxin; Validated 97.4 5.2E-05 1.1E-09 74.8 1.7 50 369-429 139-188 (280)
168 TIGR03149 cyt_nit_nrfC cytochr 97.4 9.2E-05 2E-09 70.8 3.1 54 365-431 121-184 (225)
169 PF13484 Fer4_16: 4Fe-4S doubl 97.4 2.4E-05 5.3E-10 59.9 -0.8 48 371-424 2-67 (67)
170 PRK01747 mnmC bifunctional tRN 97.4 0.0023 4.9E-08 70.7 14.2 61 9-87 404-464 (662)
171 COG1148 HdrA Heterodisulfide r 97.4 5E-05 1.1E-09 78.4 1.0 51 365-429 557-607 (622)
172 PRK09326 F420H2 dehydrogenase 97.4 6.1E-05 1.3E-09 76.5 1.3 57 364-426 7-70 (341)
173 TIGR02731 phytoene_desat phyto 97.3 0.013 2.8E-07 61.6 17.9 64 13-86 213-276 (453)
174 PF13247 Fer4_11: 4Fe-4S diclu 97.3 9.5E-05 2.1E-09 61.3 1.3 54 363-429 34-96 (98)
175 PRK12769 putative oxidoreducta 97.3 0.0002 4.2E-09 79.0 4.2 61 365-431 81-147 (654)
176 TIGR03478 DMSO_red_II_bet DMSO 97.3 8.1E-05 1.8E-09 73.7 0.8 53 363-428 156-217 (321)
177 PRK10330 formate dehydrogenase 97.3 0.00013 2.8E-09 67.4 2.1 60 366-431 84-157 (181)
178 TIGR01377 soxA_mon sarcosine o 97.2 0.045 9.7E-07 55.7 20.3 63 6-86 138-200 (380)
179 PRK11259 solA N-methyltryptoph 97.2 0.015 3.4E-07 59.0 16.7 61 9-87 145-205 (376)
180 PRK12266 glpD glycerol-3-phosp 97.2 0.071 1.5E-06 57.1 22.3 67 9-87 151-217 (508)
181 PRK14993 tetrathionate reducta 97.2 0.00013 2.9E-09 70.5 1.2 54 363-429 124-186 (244)
182 PRK10882 hydrogenase 2 protein 97.2 0.00013 2.8E-09 73.4 1.0 53 365-428 139-204 (328)
183 COG0665 DadA Glycine/D-amino a 97.2 0.014 2.9E-07 59.5 15.9 201 8-252 151-366 (387)
184 PRK09476 napG quinol dehydroge 97.2 0.0003 6.4E-09 68.5 3.4 59 368-430 96-165 (254)
185 PF12831 FAD_oxidored: FAD dep 97.2 9.9E-05 2.1E-09 77.2 0.0 70 8-91 85-154 (428)
186 COG3383 Uncharacterized anaero 97.1 0.00027 5.8E-09 76.2 2.4 74 357-436 137-219 (978)
187 TIGR02064 dsrA sulfite reducta 97.1 0.00023 4.9E-09 73.6 1.8 42 381-427 248-289 (402)
188 PRK08493 NADH dehydrogenase su 97.1 0.00021 4.6E-09 79.9 1.6 58 363-428 135-223 (819)
189 TIGR02951 DMSO_dmsB DMSO reduc 97.1 0.00028 6.1E-09 63.8 2.2 54 364-430 90-152 (161)
190 PF01593 Amino_oxidase: Flavin 97.1 0.015 3.2E-07 58.9 15.0 64 5-85 201-264 (450)
191 TIGR02732 zeta_caro_desat caro 97.0 0.04 8.7E-07 58.5 18.6 60 14-85 220-283 (474)
192 PF01134 GIDA: Glucose inhibit 97.0 0.003 6.5E-08 65.0 9.0 60 8-84 90-150 (392)
193 TIGR01582 FDH-beta formate deh 96.9 0.00026 5.7E-09 69.8 0.8 54 363-429 118-180 (283)
194 TIGR03336 IOR_alpha indolepyru 96.9 0.00037 8.1E-09 75.9 1.7 50 362-426 544-595 (595)
195 COG2878 Predicted NADH:ubiquin 96.9 0.00016 3.5E-09 65.5 -1.0 69 352-430 98-166 (198)
196 COG0437 HybA Fe-S-cluster-cont 96.9 0.00054 1.2E-08 64.0 2.4 53 363-428 94-155 (203)
197 COG0579 Predicted dehydrogenas 96.9 0.02 4.3E-07 59.8 14.0 78 3-99 143-221 (429)
198 COG0578 GlpA Glycerol-3-phosph 96.9 0.096 2.1E-06 56.0 19.3 77 8-99 159-235 (532)
199 TIGR03467 HpnE squalene-associ 96.9 0.045 9.7E-07 56.1 16.6 56 14-85 198-253 (419)
200 PF00890 FAD_binding_2: FAD bi 96.8 0.0033 7.2E-08 65.1 8.0 66 11-87 139-204 (417)
201 PRK11728 hydroxyglutarate oxid 96.8 0.036 7.9E-07 57.0 15.5 74 5-99 141-214 (393)
202 PLN02487 zeta-carotene desatur 96.8 0.13 2.7E-06 56.0 19.8 59 15-85 297-359 (569)
203 TIGR01813 flavo_cyto_c flavocy 96.8 0.0044 9.5E-08 64.8 8.4 72 13-96 130-201 (439)
204 COG4231 Indolepyruvate ferredo 96.8 0.00051 1.1E-08 73.2 1.3 51 366-427 574-626 (640)
205 TIGR02485 CobZ_N-term precorri 96.7 0.0072 1.6E-07 63.2 9.8 63 14-90 124-187 (432)
206 TIGR02486 RDH reductive dehalo 96.7 0.00083 1.8E-08 67.3 2.5 51 368-424 204-279 (314)
207 PF13738 Pyr_redox_3: Pyridine 96.7 0.0072 1.6E-07 55.7 8.3 62 9-87 78-139 (203)
208 TIGR02745 ccoG_rdxA_fixG cytoc 96.6 0.00088 1.9E-08 69.9 1.9 40 368-423 230-269 (434)
209 PRK12839 hypothetical protein; 96.6 0.0087 1.9E-07 65.0 9.7 68 9-88 210-278 (572)
210 PRK08274 tricarballylate dehyd 96.6 0.01 2.2E-07 62.6 9.8 66 13-90 131-196 (466)
211 PRK07121 hypothetical protein; 96.6 0.0081 1.8E-07 64.0 9.0 63 13-87 177-240 (492)
212 PRK12387 formate hydrogenlyase 96.6 0.0012 2.6E-08 60.9 2.3 49 381-431 12-60 (180)
213 TIGR02163 napH_ ferredoxin-typ 96.6 0.0015 3.3E-08 63.6 3.1 48 381-428 172-220 (255)
214 PRK05675 sdhA succinate dehydr 96.6 0.007 1.5E-07 65.7 8.5 66 13-88 126-191 (570)
215 PF12800 Fer4_4: 4Fe-4S bindin 96.5 0.0013 2.9E-08 36.6 1.4 17 408-424 1-17 (17)
216 PTZ00383 malate:quinone oxidor 96.5 0.013 2.8E-07 62.6 10.1 72 8-99 206-283 (497)
217 PRK08275 putative oxidoreducta 96.5 0.0084 1.8E-07 64.9 8.7 65 14-88 138-202 (554)
218 COG1941 FrhG Coenzyme F420-red 96.5 0.0016 3.4E-08 61.7 2.7 96 320-433 118-214 (247)
219 PTZ00139 Succinate dehydrogena 96.5 0.0078 1.7E-07 66.0 8.2 65 14-88 167-231 (617)
220 PLN02661 Putative thiazole syn 96.5 0.014 3.1E-07 59.3 9.3 84 6-91 163-249 (357)
221 PRK07057 sdhA succinate dehydr 96.5 0.0088 1.9E-07 65.3 8.4 65 14-88 149-213 (591)
222 PRK06134 putative FAD-binding 96.4 0.012 2.6E-07 64.1 9.2 64 12-88 216-280 (581)
223 PRK12809 putative oxidoreducta 96.4 0.0015 3.3E-08 71.8 2.3 52 365-431 81-139 (639)
224 TIGR01320 mal_quin_oxido malat 96.4 0.022 4.9E-07 60.6 10.9 82 4-99 169-250 (483)
225 PRK05035 electron transport co 96.4 0.00092 2E-08 73.7 0.3 52 367-424 368-424 (695)
226 KOG0063 RNAse L inhibitor, ABC 96.4 0.0017 3.6E-08 66.6 2.0 56 361-427 6-68 (592)
227 PRK09477 napH quinol dehydroge 96.3 0.00082 1.8E-08 66.1 -0.3 47 381-427 179-226 (271)
228 PRK08958 sdhA succinate dehydr 96.3 0.012 2.6E-07 64.2 8.5 65 14-88 144-208 (588)
229 COG1148 HdrA Heterodisulfide r 96.3 0.0013 2.9E-08 68.1 1.0 57 366-429 222-291 (622)
230 PRK09078 sdhA succinate dehydr 96.3 0.011 2.5E-07 64.5 8.3 65 14-88 150-214 (598)
231 PLN00128 Succinate dehydrogena 96.3 0.011 2.5E-07 64.9 8.2 66 13-88 187-252 (635)
232 TIGR01812 sdhA_frdA_Gneg succi 96.3 0.013 2.8E-07 63.6 8.5 64 14-88 130-193 (566)
233 TIGR01816 sdhA_forward succina 96.3 0.014 3.1E-07 63.3 8.6 64 14-88 120-183 (565)
234 TIGR01660 narH nitrate reducta 96.3 0.0017 3.6E-08 67.2 1.4 53 363-428 208-269 (492)
235 PRK08205 sdhA succinate dehydr 96.2 0.016 3.6E-07 63.1 8.7 66 13-88 140-208 (583)
236 TIGR03378 glycerol3P_GlpB glyc 96.2 0.017 3.7E-07 60.1 8.4 61 13-87 263-324 (419)
237 PRK12835 3-ketosteroid-delta-1 96.2 0.017 3.6E-07 63.0 8.7 69 15-96 215-284 (584)
238 TIGR02730 carot_isom carotene 96.2 0.012 2.7E-07 62.5 7.3 61 13-89 229-289 (493)
239 PRK07804 L-aspartate oxidase; 96.2 0.018 4E-07 62.1 8.7 67 14-88 145-212 (541)
240 TIGR01973 NuoG NADH-quinone ox 96.1 0.0038 8.3E-08 68.2 3.5 61 360-427 133-200 (603)
241 PRK05257 malate:quinone oxidor 96.1 0.037 8E-07 59.1 10.4 82 4-99 174-256 (494)
242 PLN02676 polyamine oxidase 96.0 0.35 7.6E-06 51.6 17.7 38 216-256 438-475 (487)
243 TIGR03329 Phn_aa_oxid putative 96.0 0.025 5.4E-07 59.7 8.8 64 5-87 175-238 (460)
244 PF03486 HI0933_like: HI0933-l 96.0 0.022 4.8E-07 59.3 8.2 59 13-87 109-167 (409)
245 PRK06452 sdhA succinate dehydr 96.0 0.023 4.9E-07 61.8 8.5 64 14-88 137-200 (566)
246 PF12798 Fer4_3: 4Fe-4S bindin 96.0 0.0019 4.2E-08 34.8 0.1 15 411-425 1-15 (15)
247 TIGR01945 rnfC electron transp 95.9 0.003 6.5E-08 66.3 1.4 53 367-425 361-418 (435)
248 PRK12843 putative FAD-binding 95.9 0.033 7.1E-07 60.7 9.5 70 13-96 221-291 (578)
249 PF14697 Fer4_21: 4Fe-4S diclu 95.9 0.0057 1.2E-07 45.8 2.5 25 405-429 2-26 (59)
250 PRK12845 3-ketosteroid-delta-1 95.9 0.03 6.4E-07 60.8 9.1 69 14-96 218-287 (564)
251 PRK12844 3-ketosteroid-delta-1 95.9 0.026 5.6E-07 61.2 8.5 69 14-96 209-278 (557)
252 PRK06263 sdhA succinate dehydr 95.9 0.023 5E-07 61.3 7.9 65 14-88 135-199 (543)
253 COG1140 NarY Nitrate reductase 95.9 0.0081 1.7E-07 60.3 3.9 59 368-433 180-238 (513)
254 PRK09129 NADH dehydrogenase su 95.8 0.0063 1.4E-07 68.5 3.6 60 362-428 137-203 (776)
255 PRK05192 tRNA uridine 5-carbox 95.8 0.021 4.6E-07 62.1 7.4 61 9-86 96-157 (618)
256 PRK07860 NADH dehydrogenase su 95.8 0.0065 1.4E-07 68.6 3.5 59 362-427 143-208 (797)
257 COG1142 HycB Fe-S-cluster-cont 95.7 0.0047 1E-07 55.9 1.6 62 363-430 76-140 (165)
258 TIGR01811 sdhA_Bsu succinate d 95.7 0.036 7.8E-07 60.7 8.6 65 14-88 130-198 (603)
259 PRK08166 NADH dehydrogenase su 95.7 0.0078 1.7E-07 68.4 3.5 59 362-429 142-209 (847)
260 PRK07573 sdhA succinate dehydr 95.7 0.031 6.8E-07 61.6 8.1 61 17-88 174-234 (640)
261 PRK12842 putative succinate de 95.6 0.046 9.9E-07 59.5 9.1 65 11-88 212-277 (574)
262 TIGR00551 nadB L-aspartate oxi 95.6 0.036 7.8E-07 59.0 7.8 63 13-88 128-191 (488)
263 PRK05945 sdhA succinate dehydr 95.5 0.041 9E-07 59.8 8.3 65 13-88 135-199 (575)
264 PRK12416 protoporphyrinogen ox 95.5 0.83 1.8E-05 48.0 17.9 34 216-255 429-462 (463)
265 PRK06481 fumarate reductase fl 95.5 0.045 9.8E-07 58.6 8.3 63 14-88 191-253 (506)
266 TIGR00562 proto_IX_ox protopor 95.5 0.56 1.2E-05 49.2 16.4 34 215-254 427-460 (462)
267 TIGR00136 gidA glucose-inhibit 95.5 0.038 8.3E-07 60.0 7.6 62 9-86 92-154 (617)
268 PF12837 Fer4_6: 4Fe-4S bindin 95.5 0.0025 5.5E-08 38.8 -0.8 21 366-392 4-24 (24)
269 PRK13339 malate:quinone oxidor 95.4 0.09 1.9E-06 56.2 10.2 80 4-99 175-257 (497)
270 PRK08626 fumarate reductase fl 95.4 0.041 8.9E-07 60.8 7.6 63 15-88 160-222 (657)
271 PRK06854 adenylylsulfate reduc 95.3 0.048 1.1E-06 59.7 8.1 65 12-87 131-196 (608)
272 PRK09626 oorD 2-oxoglutarate-a 95.3 0.0075 1.6E-07 50.4 1.4 28 403-430 10-37 (103)
273 PRK13984 putative oxidoreducta 95.3 0.013 2.8E-07 64.0 3.4 26 365-396 82-107 (604)
274 PF13237 Fer4_10: 4Fe-4S diclu 95.2 0.0095 2.1E-07 43.0 1.4 21 403-423 1-21 (52)
275 PRK08401 L-aspartate oxidase; 95.2 0.068 1.5E-06 56.6 8.5 59 13-89 120-178 (466)
276 PRK08222 hydrogenase 4 subunit 95.2 0.0099 2.1E-07 54.9 1.8 47 381-429 12-58 (181)
277 PF00037 Fer4: 4Fe-4S binding 95.2 0.0078 1.7E-07 36.6 0.7 22 366-393 3-24 (24)
278 TIGR00314 cdhA CO dehydrogenas 95.2 0.0043 9.3E-08 68.4 -0.7 51 367-424 397-452 (784)
279 PRK12814 putative NADPH-depend 95.2 0.0055 1.2E-07 67.6 0.0 39 213-256 464-502 (652)
280 PRK06175 L-aspartate oxidase; 95.2 0.061 1.3E-06 56.4 7.9 62 14-88 129-191 (433)
281 COG2081 Predicted flavoprotein 95.2 0.072 1.6E-06 54.6 8.0 58 13-87 111-168 (408)
282 PRK12837 3-ketosteroid-delta-1 95.1 0.089 1.9E-06 56.4 9.2 69 14-97 175-245 (513)
283 KOG4254 Phytoene desaturase [C 95.1 0.032 6.9E-07 57.8 5.4 61 12-88 263-323 (561)
284 PRK09130 NADH dehydrogenase su 95.1 0.014 3E-07 64.8 2.9 60 362-427 138-203 (687)
285 TIGR00276 iron-sulfur cluster 95.0 0.0067 1.4E-07 60.0 0.1 54 368-427 158-227 (282)
286 PLN02976 amine oxidase 95.0 2.1 4.6E-05 51.1 20.0 53 213-268 1148-1207(1713)
287 TIGR00273 iron-sulfur cluster- 95.0 0.013 2.8E-07 61.3 2.1 54 366-425 290-359 (432)
288 KOG2852 Possible oxidoreductas 95.0 0.35 7.5E-06 47.7 11.6 67 8-87 142-209 (380)
289 PRK09231 fumarate reductase fl 94.9 0.077 1.7E-06 57.9 8.0 64 14-88 134-198 (582)
290 TIGR01176 fum_red_Fp fumarate 94.9 0.089 1.9E-06 57.4 8.4 64 14-88 133-197 (580)
291 PRK08071 L-aspartate oxidase; 94.8 0.068 1.5E-06 57.3 7.1 62 14-88 131-192 (510)
292 PRK09077 L-aspartate oxidase; 94.8 0.083 1.8E-06 57.0 7.8 65 14-88 139-209 (536)
293 PLN03000 amine oxidase 94.8 1.1 2.3E-05 51.0 16.5 38 216-256 588-625 (881)
294 TIGR02936 fdxN_nitrog ferredox 94.7 0.013 2.8E-07 47.5 1.1 27 403-429 15-41 (91)
295 PRK12834 putative FAD-binding 94.7 0.12 2.6E-06 55.9 8.9 79 15-95 150-235 (549)
296 PTZ00305 NADH:ubiquinone oxido 94.7 0.035 7.6E-07 54.6 4.2 56 365-427 208-271 (297)
297 TIGR03364 HpnW_proposed FAD de 94.7 0.11 2.3E-06 52.8 8.0 60 6-87 138-198 (365)
298 TIGR02734 crtI_fam phytoene de 94.7 0.1 2.3E-06 55.5 8.2 60 13-88 219-278 (502)
299 TIGR02179 PorD_KorD 2-oxoacid: 94.6 0.016 3.5E-07 45.5 1.4 27 403-429 19-45 (78)
300 PRK15033 tricarballylate utili 94.6 0.0079 1.7E-07 61.3 -0.6 49 368-423 32-81 (389)
301 COG2221 DsrA Dissimilatory sul 94.6 0.0081 1.8E-07 59.4 -0.6 29 402-430 165-193 (317)
302 COG1600 Uncharacterized Fe-S p 94.5 0.011 2.4E-07 59.5 0.3 57 369-433 185-256 (337)
303 PRK07512 L-aspartate oxidase; 94.5 0.078 1.7E-06 56.9 6.8 62 14-88 137-199 (513)
304 PRK11883 protoporphyrinogen ox 94.5 2.1 4.6E-05 44.4 17.5 61 8-85 213-274 (451)
305 TIGR00275 flavoprotein, HI0933 94.5 0.2 4.4E-06 51.9 9.7 57 12-86 104-160 (400)
306 PRK08641 sdhA succinate dehydr 94.5 0.12 2.6E-06 56.5 8.2 65 14-88 134-202 (589)
307 PRK09623 vorD 2-ketoisovalerat 94.5 0.025 5.3E-07 47.5 2.2 28 402-429 44-71 (105)
308 PRK06069 sdhA succinate dehydr 94.4 0.11 2.3E-06 56.7 7.7 64 14-88 138-202 (577)
309 PTZ00306 NADH-dependent fumara 94.4 0.15 3.2E-06 60.1 9.4 68 14-89 545-623 (1167)
310 TIGR00403 ndhI NADH-plastoquin 94.4 0.024 5.3E-07 52.4 2.3 25 403-427 56-80 (183)
311 KOG2844 Dimethylglycine dehydr 94.4 0.11 2.3E-06 56.3 7.3 64 8-88 182-245 (856)
312 COG1145 NapF Ferredoxin [Energ 94.4 0.016 3.4E-07 47.2 0.9 26 403-428 23-48 (99)
313 PRK00941 acetyl-CoA decarbonyl 94.4 0.0071 1.5E-07 66.8 -1.6 51 367-425 402-458 (781)
314 PRK13030 2-oxoacid ferredoxin 94.3 0.037 8E-07 64.2 3.8 52 362-423 623-677 (1159)
315 PRK09625 porD pyruvate flavodo 94.2 0.019 4.2E-07 50.3 1.2 26 403-428 53-78 (133)
316 PRK08348 NADH-plastoquinone ox 94.2 0.023 4.9E-07 48.8 1.5 27 403-429 36-62 (120)
317 PTZ00363 rab-GDP dissociation 94.2 0.16 3.6E-06 53.4 8.2 58 13-85 232-289 (443)
318 COG1034 NuoG NADH dehydrogenas 94.2 0.025 5.4E-07 62.2 2.2 67 355-427 130-202 (693)
319 COG1233 Phytoene dehydrogenase 94.1 0.12 2.6E-06 55.1 7.2 56 13-84 224-279 (487)
320 COG1144 Pyruvate:ferredoxin ox 94.1 0.035 7.7E-07 44.8 2.3 27 403-429 29-55 (91)
321 PRK07843 3-ketosteroid-delta-1 94.1 0.17 3.8E-06 54.8 8.5 69 14-96 209-278 (557)
322 TIGR03169 Nterm_to_SelD pyridi 94.1 1.1 2.4E-05 45.4 13.9 42 215-256 271-312 (364)
323 PLN02815 L-aspartate oxidase 94.0 0.14 3.1E-06 55.9 7.6 65 14-88 156-224 (594)
324 cd01916 ACS_1 Acetyl-CoA synth 94.0 0.011 2.3E-07 65.3 -1.1 53 367-425 363-419 (731)
325 TIGR02061 aprA adenosine phosp 94.0 0.18 3.9E-06 55.3 8.3 64 14-87 127-192 (614)
326 PRK09193 indolepyruvate ferred 94.0 0.048 1E-06 63.2 3.9 52 362-423 637-691 (1165)
327 TIGR02745 ccoG_rdxA_fixG cytoc 93.9 0.015 3.2E-07 60.8 -0.2 44 381-427 182-248 (434)
328 COG4656 RnfC Predicted NADH:ub 93.9 0.012 2.6E-07 61.7 -1.0 49 370-424 366-419 (529)
329 PRK07395 L-aspartate oxidase; 93.9 0.12 2.5E-06 56.1 6.5 62 14-87 135-198 (553)
330 COG1139 Uncharacterized conser 93.8 0.027 5.9E-07 57.8 1.5 49 370-424 309-373 (459)
331 PF12838 Fer4_7: 4Fe-4S diclus 93.8 0.015 3.2E-07 42.0 -0.3 23 410-432 1-23 (52)
332 PRK13029 2-oxoacid ferredoxin 93.8 0.056 1.2E-06 62.6 4.0 50 365-423 653-705 (1186)
333 PRK07570 succinate dehydrogena 93.7 0.028 6E-07 54.6 1.3 53 367-425 155-228 (250)
334 PRK06273 ferredoxin; Provision 93.7 0.022 4.8E-07 51.8 0.5 27 403-429 43-69 (165)
335 PLN02576 protoporphyrinogen ox 93.6 4.5 9.7E-05 42.9 18.1 33 216-254 455-487 (496)
336 PRK05352 Na(+)-translocating N 93.6 0.021 4.6E-07 60.0 0.3 52 367-424 372-430 (448)
337 PRK07803 sdhA succinate dehydr 93.6 0.22 4.7E-06 54.9 8.0 64 14-88 139-215 (626)
338 TIGR03290 CoB_CoM_SS_C CoB--Co 93.5 0.018 3.8E-07 51.1 -0.6 51 369-425 2-62 (144)
339 TIGR03862 flavo_PP4765 unchara 93.4 0.4 8.7E-06 49.4 9.1 55 14-86 87-141 (376)
340 TIGR00384 dhsB succinate dehyd 93.4 0.02 4.4E-07 54.4 -0.3 52 367-424 136-209 (220)
341 PF13187 Fer4_9: 4Fe-4S diclus 93.3 0.047 1E-06 39.7 1.6 24 410-433 1-24 (55)
342 PTZ00318 NADH dehydrogenase-li 93.3 1.5 3.3E-05 45.7 13.5 42 215-256 308-349 (424)
343 PRK14028 pyruvate ferredoxin o 93.3 0.07 1.5E-06 53.5 3.3 41 387-427 225-265 (312)
344 KOG2820 FAD-dependent oxidored 93.2 0.34 7.3E-06 48.8 7.9 65 5-85 146-211 (399)
345 TIGR02494 PFLE_PFLC glycyl-rad 93.2 0.053 1.2E-06 53.7 2.3 26 403-428 42-67 (295)
346 PLN00071 photosystem I subunit 93.0 0.042 9.1E-07 43.6 1.0 27 403-429 3-29 (81)
347 TIGR02733 desat_CrtD C-3',4' d 92.9 0.32 7E-06 51.6 8.0 69 6-85 223-293 (492)
348 TIGR02910 sulfite_red_A sulfit 92.8 0.069 1.5E-06 53.9 2.5 51 368-424 219-316 (334)
349 PF06039 Mqo: Malate:quinone o 92.7 0.57 1.2E-05 49.2 9.1 81 5-99 173-254 (488)
350 PF13183 Fer4_8: 4Fe-4S diclus 92.5 0.0013 2.9E-08 48.3 -7.8 50 369-424 3-56 (57)
351 CHL00065 psaC photosystem I su 92.5 0.035 7.6E-07 44.1 -0.1 26 404-429 4-29 (81)
352 COG1141 Fer Ferredoxin [Energy 92.5 0.075 1.6E-06 40.9 1.7 55 364-429 3-67 (68)
353 PF13534 Fer4_17: 4Fe-4S diclu 92.5 0.005 1.1E-07 46.0 -4.8 48 371-424 2-59 (61)
354 KOG0042 Glycerol-3-phosphate d 92.4 0.092 2E-06 55.6 2.9 70 12-91 223-292 (680)
355 PLN02268 probable polyamine ox 92.4 3.4 7.4E-05 42.9 14.7 36 216-254 399-434 (435)
356 TIGR03048 PS_I_psaC photosyste 92.4 0.062 1.3E-06 42.5 1.2 28 403-430 2-29 (80)
357 PLN02568 polyamine oxidase 92.4 5.9 0.00013 42.9 16.7 35 217-254 501-535 (539)
358 COG1143 NuoI Formate hydrogenl 92.3 0.069 1.5E-06 48.9 1.5 27 403-429 49-75 (172)
359 COG1149 MinD superfamily P-loo 92.2 0.059 1.3E-06 52.5 1.1 30 403-433 63-92 (284)
360 PF00732 GMC_oxred_N: GMC oxid 92.2 0.23 5.1E-06 48.7 5.4 73 14-98 194-268 (296)
361 PRK05888 NADH dehydrogenase su 92.2 0.11 2.3E-06 47.2 2.7 28 403-430 47-79 (164)
362 PRK05329 anaerobic glycerol-3- 92.2 0.6 1.3E-05 48.9 8.6 59 13-85 259-317 (422)
363 PF13370 Fer4_13: 4Fe-4S singl 92.1 0.037 8E-07 41.2 -0.3 53 367-428 2-58 (58)
364 PRK12576 succinate dehydrogena 91.9 0.042 9.1E-07 54.3 -0.3 54 366-425 149-222 (279)
365 PLN02529 lysine-specific histo 91.9 5 0.00011 45.1 15.8 38 215-255 562-599 (738)
366 TIGR03379 glycerol3P_GlpC glyc 91.9 0.06 1.3E-06 55.7 0.8 52 368-425 4-68 (397)
367 PRK12385 fumarate reductase ir 91.8 0.035 7.7E-07 53.7 -1.0 52 367-424 145-218 (244)
368 PRK12810 gltD glutamate syntha 91.5 0.58 1.3E-05 49.6 7.8 67 19-87 335-401 (471)
369 TIGR01936 nqrA NADH:ubiquinone 91.5 0.052 1.1E-06 57.0 -0.2 52 367-424 371-429 (447)
370 PF13484 Fer4_16: 4Fe-4S doubl 91.4 0.04 8.6E-07 41.9 -0.9 20 410-429 1-20 (67)
371 PRK15055 anaerobic sulfite red 91.3 0.14 3E-06 52.0 2.7 16 409-424 307-322 (344)
372 PRK09624 porD pyuvate ferredox 91.2 0.091 2E-06 44.1 1.1 27 403-429 45-71 (105)
373 TIGR01971 NuoI NADH-quinone ox 91.2 0.12 2.6E-06 44.3 1.8 22 408-429 42-63 (122)
374 COG1146 Ferredoxin [Energy pro 91.2 0.13 2.8E-06 39.4 1.8 30 403-432 2-31 (68)
375 PRK11168 glpC sn-glycerol-3-ph 91.2 0.081 1.7E-06 54.6 0.9 53 367-425 5-70 (396)
376 PRK15317 alkyl hydroperoxide r 91.0 0.9 1.9E-05 48.8 8.6 60 11-87 264-323 (517)
377 COG0445 GidA Flavin-dependent 90.8 0.21 4.5E-06 53.2 3.5 63 7-85 89-157 (621)
378 COG1150 HdrC Heterodisulfide r 90.8 0.027 5.8E-07 52.0 -2.7 51 369-425 39-99 (195)
379 CHL00014 ndhI NADH dehydrogena 90.7 0.16 3.4E-06 46.3 2.2 25 403-427 53-77 (167)
380 PRK13977 myosin-cross-reactive 90.7 0.62 1.3E-05 50.5 6.9 66 14-88 227-295 (576)
381 TIGR02484 CitB CitB domain pro 90.6 0.047 1E-06 55.5 -1.4 51 368-425 13-64 (372)
382 PRK11274 glcF glycolate oxidas 90.6 0.063 1.4E-06 55.7 -0.6 50 368-425 22-89 (407)
383 PF12797 Fer4_2: 4Fe-4S bindin 90.6 0.097 2.1E-06 31.1 0.4 19 365-389 4-22 (22)
384 PF13459 Fer4_15: 4Fe-4S singl 90.5 0.097 2.1E-06 39.7 0.5 52 366-428 3-65 (65)
385 COG0348 NapH Polyferredoxin [E 90.1 0.17 3.7E-06 52.3 2.1 46 381-432 218-268 (386)
386 PRK06991 ferredoxin; Provision 89.9 0.13 2.8E-06 50.6 1.0 26 403-428 79-104 (270)
387 PRK12577 succinate dehydrogena 89.9 0.051 1.1E-06 55.0 -1.9 52 368-425 151-225 (329)
388 PRK07208 hypothetical protein; 89.9 1.1 2.5E-05 47.2 8.2 62 13-85 218-279 (479)
389 PRK02651 photosystem I subunit 89.9 0.14 3E-06 40.5 1.0 25 405-429 5-29 (81)
390 PRK06116 glutathione reductase 89.8 1.4 3.1E-05 46.2 8.9 59 14-88 209-267 (450)
391 TIGR01292 TRX_reduct thioredox 89.8 1.3 2.8E-05 43.1 8.0 58 12-87 56-113 (300)
392 PRK04965 NADH:flavorubredoxin 89.7 1.5 3.2E-05 44.9 8.7 57 14-87 184-240 (377)
393 KOG3256 NADH:ubiquinone oxidor 89.5 0.093 2E-06 47.0 -0.3 28 407-434 109-138 (212)
394 TIGR01944 rnfB electron transp 89.5 0.2 4.3E-06 45.5 1.8 27 403-429 107-133 (165)
395 PRK14989 nitrite reductase sub 89.3 1.7 3.7E-05 49.6 9.5 67 16-99 190-256 (847)
396 PF13434 K_oxygenase: L-lysine 89.1 0.44 9.6E-06 48.4 4.1 69 6-85 88-158 (341)
397 TIGR01810 betA choline dehydro 88.9 0.94 2E-05 48.7 6.8 70 15-99 196-266 (532)
398 PRK12386 fumarate reductase ir 88.8 0.19 4.2E-06 48.8 1.3 53 366-424 139-215 (251)
399 PRK05950 sdhB succinate dehydr 88.8 0.12 2.6E-06 49.6 -0.1 16 409-424 198-213 (232)
400 PRK09564 coenzyme A disulfide 88.8 1.6 3.5E-05 45.6 8.3 57 13-87 191-247 (444)
401 TIGR03140 AhpF alkyl hydropero 88.7 1.7 3.6E-05 46.7 8.5 59 11-86 265-323 (515)
402 PLN02328 lysine-specific histo 88.6 42 0.0009 38.3 19.5 38 216-256 644-681 (808)
403 PRK09754 phenylpropionate diox 88.5 2.4 5.2E-05 43.7 9.3 66 14-99 187-252 (396)
404 PRK05113 electron transport co 88.2 0.24 5.2E-06 46.2 1.4 26 403-428 108-133 (191)
405 TIGR01350 lipoamide_DH dihydro 88.0 1.9 4E-05 45.3 8.2 62 13-89 211-272 (461)
406 PRK06370 mercuric reductase; V 87.9 2.4 5.2E-05 44.7 8.9 61 14-88 213-273 (463)
407 TIGR03294 FrhG coenzyme F420 h 87.6 0.21 4.5E-06 47.9 0.7 27 403-429 168-194 (228)
408 TIGR02700 flavo_MJ0208 archaeo 87.5 0.24 5.2E-06 47.6 1.1 27 403-429 142-168 (234)
409 PRK13800 putative oxidoreducta 87.2 1.6 3.5E-05 50.1 7.7 63 15-88 141-207 (897)
410 PRK05249 soluble pyridine nucl 87.0 2.5 5.4E-05 44.4 8.5 58 14-88 217-274 (461)
411 PRK08640 sdhB succinate dehydr 87.0 0.14 3E-06 49.8 -1.0 52 367-424 150-224 (249)
412 COG1941 FrhG Coenzyme F420-red 86.9 0.21 4.6E-06 47.6 0.3 47 366-425 186-233 (247)
413 COG1141 Fer Ferredoxin [Energy 86.8 0.29 6.3E-06 37.7 0.9 21 403-423 2-22 (68)
414 TIGR01316 gltA glutamate synth 86.7 2.7 5.9E-05 44.3 8.5 70 17-86 313-387 (449)
415 COG0492 TrxB Thioredoxin reduc 86.5 2.6 5.6E-05 42.2 7.8 59 10-87 58-116 (305)
416 PF00070 Pyr_redox: Pyridine n 86.1 2 4.4E-05 33.5 5.5 39 14-54 41-79 (80)
417 KOG1336 Monodehydroascorbate/f 86.1 1.9 4.1E-05 45.3 6.7 57 16-87 258-314 (478)
418 TIGR02912 sulfite_red_C sulfit 85.9 0.2 4.3E-06 50.3 -0.5 27 403-429 163-192 (314)
419 COG1152 CdhA CO dehydrogenase/ 85.9 0.15 3.3E-06 54.1 -1.4 48 369-424 400-453 (772)
420 TIGR02176 pyruv_ox_red pyruvat 85.8 0.29 6.3E-06 57.5 0.7 26 403-428 677-702 (1165)
421 PRK02106 choline dehydrogenase 85.8 1.6 3.4E-05 47.4 6.3 86 16-120 204-290 (560)
422 PRK12831 putative oxidoreducta 85.7 2.2 4.8E-05 45.2 7.2 67 20-86 325-396 (464)
423 TIGR01318 gltD_gamma_fam gluta 85.6 2.6 5.6E-05 44.7 7.7 69 18-86 325-398 (467)
424 KOG0404 Thioredoxin reductase 85.5 1.6 3.5E-05 41.7 5.3 60 11-92 68-127 (322)
425 COG1035 FrhB Coenzyme F420-red 85.4 0.34 7.5E-06 48.8 0.9 47 366-423 2-48 (332)
426 PLN02172 flavin-containing mon 85.4 2.9 6.4E-05 44.3 8.0 64 10-86 108-173 (461)
427 TIGR02374 nitri_red_nirB nitri 85.2 3.5 7.7E-05 46.7 9.0 57 15-88 184-240 (785)
428 PRK05976 dihydrolipoamide dehy 84.6 4.5 9.8E-05 42.7 9.0 62 14-88 222-283 (472)
429 PF13454 NAD_binding_9: FAD-NA 84.5 5.3 0.00012 35.5 8.2 63 5-84 86-155 (156)
430 PRK06259 succinate dehydrogena 84.5 0.27 5.8E-06 52.4 -0.4 53 367-425 131-201 (486)
431 TIGR02053 MerA mercuric reduct 84.4 4.4 9.6E-05 42.6 8.8 60 15-88 209-268 (463)
432 PF13746 Fer4_18: 4Fe-4S diclu 84.1 0.45 9.8E-06 36.7 0.8 20 406-425 47-66 (69)
433 PRK12575 succinate dehydrogena 84.0 0.28 6.2E-06 47.2 -0.4 52 367-424 142-216 (235)
434 TIGR00402 napF ferredoxin-type 84.0 0.38 8.2E-06 39.9 0.4 26 404-429 29-54 (101)
435 PRK00783 DNA-directed RNA poly 83.7 0.52 1.1E-05 46.1 1.3 44 381-429 146-189 (263)
436 PRK06416 dihydrolipoamide dehy 83.5 4.4 9.5E-05 42.6 8.3 61 14-88 214-274 (462)
437 PF13459 Fer4_15: 4Fe-4S singl 83.2 0.47 1E-05 35.9 0.6 19 404-422 1-19 (65)
438 PRK09897 hypothetical protein; 83.1 4.3 9.3E-05 43.9 8.1 51 19-85 113-165 (534)
439 TIGR02462 pyranose_ox pyranose 83.1 2.5 5.3E-05 45.8 6.2 62 15-87 216-280 (544)
440 KOG2404 Fumarate reductase, fl 82.9 3.7 8.1E-05 41.3 6.8 70 17-98 147-218 (477)
441 TIGR01424 gluta_reduc_2 glutat 82.5 5.1 0.00011 42.1 8.3 57 14-87 208-264 (446)
442 PRK06115 dihydrolipoamide dehy 82.3 6.3 0.00014 41.7 9.0 63 14-88 216-278 (466)
443 TIGR01423 trypano_reduc trypan 82.2 5.9 0.00013 42.3 8.7 58 15-88 233-290 (486)
444 PRK13795 hypothetical protein; 82.2 0.65 1.4E-05 51.2 1.4 27 403-429 575-601 (636)
445 TIGR03287 methan_mark_16 putat 82.0 0.72 1.6E-05 47.5 1.6 25 403-427 296-322 (391)
446 COG0029 NadB Aspartate oxidase 81.9 2.5 5.4E-05 44.8 5.5 66 14-90 134-200 (518)
447 TIGR03143 AhpF_homolog putativ 81.7 5.7 0.00012 43.1 8.5 58 11-87 58-115 (555)
448 PLN00129 succinate dehydrogena 81.5 0.33 7.1E-06 47.8 -1.0 17 409-425 244-260 (276)
449 COG2878 Predicted NADH:ubiquin 81.2 0.48 1E-05 43.4 -0.0 25 403-427 109-133 (198)
450 cd07032 RNAP_I_II_AC40 AC40 su 81.2 0.94 2E-05 45.0 2.0 41 381-421 203-243 (291)
451 PLN02507 glutathione reductase 81.0 6.4 0.00014 42.1 8.5 57 15-88 246-302 (499)
452 PRK08318 dihydropyrimidine deh 80.8 0.87 1.9E-05 47.6 1.8 27 403-429 336-365 (420)
453 PRK08764 ferredoxin; Provision 80.7 0.66 1.4E-05 40.7 0.7 23 406-428 82-104 (135)
454 PF13183 Fer4_8: 4Fe-4S diclus 80.6 0.26 5.6E-06 35.9 -1.6 16 408-423 2-17 (57)
455 PF13370 Fer4_13: 4Fe-4S singl 80.4 0.57 1.2E-05 34.8 0.2 18 406-423 1-18 (58)
456 PRK08493 NADH dehydrogenase su 80.0 0.98 2.1E-05 51.1 1.9 44 368-417 203-248 (819)
457 COG1249 Lpd Pyruvate/2-oxoglut 80.0 6.8 0.00015 41.5 8.1 70 15-99 216-285 (454)
458 PF00996 GDI: GDP dissociation 79.9 7.1 0.00015 41.1 8.2 61 5-81 221-284 (438)
459 TIGR01292 TRX_reduct thioredox 79.9 6 0.00013 38.3 7.3 60 16-87 179-239 (300)
460 PRK14694 putative mercuric red 79.8 8.4 0.00018 40.7 8.9 58 13-88 218-275 (468)
461 PRK07845 flavoprotein disulfid 79.8 7.7 0.00017 41.0 8.6 59 14-89 219-277 (466)
462 PRK13552 frdB fumarate reducta 79.8 0.73 1.6E-05 44.5 0.7 17 408-424 205-221 (239)
463 PRK12771 putative glutamate sy 79.5 5 0.00011 43.6 7.2 67 18-85 310-379 (564)
464 PRK14727 putative mercuric red 79.5 7.8 0.00017 41.1 8.5 57 15-89 230-286 (479)
465 PRK07569 bidirectional hydroge 79.3 1.1 2.3E-05 43.1 1.7 28 403-430 140-169 (234)
466 KOG1346 Programmed cell death 79.2 2.3 5E-05 44.1 4.1 55 14-85 394-448 (659)
467 COG1053 SdhA Succinate dehydro 79.1 2.5 5.4E-05 45.9 4.7 65 14-88 139-204 (562)
468 PRK07818 dihydrolipoamide dehy 79.0 9.3 0.0002 40.3 8.9 62 14-88 214-275 (466)
469 TIGR03385 CoA_CoA_reduc CoA-di 78.9 7.6 0.00016 40.3 8.1 55 14-87 180-234 (427)
470 COG0247 GlpC Fe-S oxidoreducta 78.9 0.43 9.4E-06 48.8 -1.2 52 368-425 8-74 (388)
471 PRK08010 pyridine nucleotide-d 78.8 8 0.00017 40.4 8.3 57 14-88 200-256 (441)
472 TIGR01421 gluta_reduc_1 glutat 77.6 11 0.00025 39.6 9.0 58 16-88 210-267 (450)
473 PRK07251 pyridine nucleotide-d 77.1 11 0.00025 39.2 8.8 57 14-88 199-255 (438)
474 COG2768 Uncharacterized Fe-S c 77.0 1.1 2.4E-05 44.4 1.0 27 403-429 187-213 (354)
475 COG1252 Ndh NADH dehydrogenase 76.7 6.8 0.00015 40.8 6.8 54 14-87 206-263 (405)
476 TIGR00276 iron-sulfur cluster 76.7 0.75 1.6E-05 45.5 -0.2 20 408-427 158-177 (282)
477 PTZ00058 glutathione reductase 76.6 12 0.00025 40.9 8.9 59 15-88 280-338 (561)
478 PRK12778 putative bifunctional 75.8 7.9 0.00017 43.6 7.6 65 21-85 616-685 (752)
479 PRK07570 succinate dehydrogena 75.7 1.3 2.7E-05 43.1 1.1 22 405-426 153-174 (250)
480 PRK13748 putative mercuric red 75.3 10 0.00023 40.9 8.1 56 15-88 312-367 (561)
481 PF07992 Pyr_redox_2: Pyridine 75.3 3.4 7.4E-05 37.5 3.8 56 19-87 64-123 (201)
482 PRK06912 acoL dihydrolipoamide 74.9 14 0.0003 38.9 8.8 59 14-88 212-270 (458)
483 COG1150 HdrC Heterodisulfide r 74.8 1.2 2.5E-05 41.4 0.5 19 408-426 38-56 (195)
484 PRK15055 anaerobic sulfite red 74.5 1.5 3.3E-05 44.6 1.3 19 7-25 2-20 (344)
485 COG3075 GlpB Anaerobic glycero 73.4 6.6 0.00014 39.7 5.4 61 14-90 259-319 (421)
486 PRK12775 putative trifunctiona 73.1 10 0.00023 44.2 7.9 69 20-88 616-688 (1006)
487 cd07030 RNAP_D D subunit of Ar 71.5 2.4 5.1E-05 41.4 1.9 41 381-428 146-188 (259)
488 PRK07845 flavoprotein disulfid 71.3 15 0.00032 38.9 7.9 34 213-251 302-335 (466)
489 TIGR02486 RDH reductive dehalo 71.0 1.5 3.2E-05 44.1 0.3 20 408-427 204-223 (314)
490 PRK06327 dihydrolipoamide dehy 70.5 19 0.00041 38.2 8.6 62 14-88 225-286 (475)
491 COG0479 FrdB Succinate dehydro 70.3 1 2.3E-05 43.2 -0.9 52 367-424 140-213 (234)
492 PLN02785 Protein HOTHEAD 70.1 7.1 0.00015 42.8 5.3 74 12-99 220-301 (587)
493 PRK06567 putative bifunctional 70.0 12 0.00025 43.4 7.1 68 17-84 644-726 (1028)
494 PRK04965 NADH:flavorubredoxin 69.9 12 0.00025 38.2 6.6 47 21-87 66-112 (377)
495 PTZ00052 thioredoxin reductase 69.7 19 0.00042 38.4 8.5 56 16-88 225-280 (499)
496 COG3486 IucD Lysine/ornithine 69.6 13 0.00028 38.6 6.7 69 6-90 91-161 (436)
497 TIGR02910 sulfite_red_A sulfit 69.4 1.9 4.1E-05 43.7 0.7 16 408-423 219-234 (334)
498 PRK11749 dihydropyrimidine deh 69.4 14 0.0003 38.9 7.2 69 17-86 315-387 (457)
499 TIGR00273 iron-sulfur cluster- 69.3 1.8 3.9E-05 45.5 0.5 18 407-424 291-308 (432)
500 TIGR03169 Nterm_to_SelD pyridi 69.2 6.7 0.00015 39.6 4.7 50 18-87 59-108 (364)
No 1
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.6e-131 Score=968.98 Aligned_cols=437 Identities=65% Similarity=1.144 Sum_probs=426.3
Q ss_pred ccCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 4 CHNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 4 ~~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
-||||+|++.+|-+||.++||++||||+++++++++++++||.|+||.|+|+||++||.||++|++|++++|+++|+|+|
T Consensus 174 NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 174 NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred cCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEec
Q 013495 84 CRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVAL 163 (442)
Q Consensus 84 ~~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~ 163 (442)
++++|++|++++|+|+ .++++|+|++|+||+|+++++++++|.+.|++||||+.++|||+|+||+.|++|+||+|+.+
T Consensus 254 c~G~Lskqi~kkf~Lr--~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgL 331 (621)
T KOG2415|consen 254 CHGSLSKQIIKKFDLR--ENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGL 331 (621)
T ss_pred ccchhHHHHHHHhCcc--cCCCcceeccccceeEecChhhcCCcceeeeccCcccCCccCceeEEEcCCCeEEEEEEEEe
Confidence 9999999999999999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 164 NYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
||+||+++|+++||++|+||.+++.|++|+++.|+||++++||+|++|++++||.+|||++|||+|...++|.|+||+||
T Consensus 332 dY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSG 411 (621)
T KOG2415|consen 332 DYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSG 411 (621)
T ss_pred cCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCceEeecccccccccccccchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc-C------chHHHHHHHHHHhhhHHHHHHHHchhhhhh--hCChHHHHHHHHHHHHhcCCCCCcccC
Q 013495 244 MLAAEAGFGVLHE-D------SNMEIYWDTLQKSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKH 314 (442)
Q Consensus 244 ~lAAeai~~al~~-~------~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (442)
|+|||+|++++.+ . -.+..|++.++++|+++||+.+||+|+.|+ +|.|+||++++++.++++|+.||||+|
T Consensus 412 mlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~lG~ygGmiySgi~~~~lkG~~PwTLkh 491 (621)
T KOG2415|consen 412 MLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKLGLYGGMIYSGIFSYVLKGKVPWTLKH 491 (621)
T ss_pred hhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccccccccchhhhhhHHHhhcCccceeecc
Confidence 9999999999976 1 236799999999999999999999999997 999999999999999999999999999
Q ss_pred CCCccccchhhhcCCCCCCCCCCCCcCcCcccceeecCccccCCCCCCeEecCCCCCcccCCCCCccccccccccceEEE
Q 013495 315 GKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEY 394 (442)
Q Consensus 315 ~~~d~~~~~~~~~~~~i~y~~pdg~l~fd~~~~~~~~~~~~~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~ 394 (442)
.+.|++.|+|+++++||+||||||+||||.+|||++|||||++|||+||+++|++++...+++.|.+|+.|||||+|||+
T Consensus 492 ~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~~~~ip~~~nf~~y~gpE~rfCPAgVYEy 571 (621)
T KOG2415|consen 492 GKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRDDDIPVKVNFPVYKGPESRFCPAGVYEY 571 (621)
T ss_pred CCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeecCCCcchhcCcccccChhhccCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCc--eeEEEecCCCccCCcccccCCCCCeeEECcCCCCCCcccCC
Q 013495 395 VPDEKNQ--LKLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGGPGYSVM 442 (442)
Q Consensus 395 ~~~~~~~--~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~gg~G~~y~~~ 442 (442)
+++|.+. ++++||+||||||+||+|++|.|+|+|++||||+||.|+.|
T Consensus 572 V~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 572 VPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred cccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 8877543 59999999999999999999999999999999999999988
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=6e-43 Score=360.15 Aligned_cols=304 Identities=33% Similarity=0.508 Sum_probs=247.9
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+|+++|.+||+||+++|+++|++++++++|+++..++++.++++... +.+++||+||+|||++|
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~----------------~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG----------------DDEVRAKVVIDADGVNS 152 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC----------------CEEEEcCEEEECCCcch
Confidence 89999999999999999999999999999999999987776666544 27999999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
.+++++ |+. ...++.++++++|++.+| .++...+++.++......||+|+||++++.++||+++..++
T Consensus 153 ~l~~~l----g~~---~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~- 220 (396)
T COG0644 153 ALARKL----GLK---DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD- 220 (396)
T ss_pred HHHHHh----CCC---CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-
Confidence 999976 665 355778999999999988 34456777767666668899999999999999999998876
Q ss_pred CCCCChH-HHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHHH
Q 013495 167 NPFLNPY-EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGML 245 (442)
Q Consensus 167 ~~~~~~~-~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~l 245 (442)
+..++. +++++|++||.+++.+.+++.+++.++.+|.+++.+.| ++++|+++||||||++||++++||++||.||++
T Consensus 221 -~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~ 298 (396)
T COG0644 221 -PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKL 298 (396)
T ss_pred -cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEeccccCCCCcccCcHHHHHHHHHH
Confidence 444555 89999999999999888899999999999999998877 999999999999999999999999999999999
Q ss_pred HHHHHHhhhcc-CchHHHHHHHHHHhhhHHHHHHHHchhhhhhhCChHHHHHHHHHHHHhcCCCCCcccCCCCccccchh
Q 013495 246 AAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDA 324 (442)
Q Consensus 246 AAeai~~al~~-~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 324 (442)
|||+|.+++.. .+.|+.|++.|++++..++++..++.+..++ .+...+......+.. .|...+..
T Consensus 299 Aa~~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~~ 364 (396)
T COG0644 299 AAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLR--LLDRTLPALIKLLAD------------KDLLGLIK 364 (396)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh--HhhhhHHHHHHHHhc------------cccccccc
Confidence 99999999865 4679999999999987777777777766554 233444444433221 12222333
Q ss_pred hhcCCCCCCCCCCCCcC-cCcccceeecCcc
Q 013495 325 ARLHSPIEYPKPDGVLS-FDVPTSLHRSNTN 354 (442)
Q Consensus 325 ~~~~~~i~y~~pdg~l~-fd~~~~~~~~~~~ 354 (442)
......+.++++.+.++ ++++.++.++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (396)
T COG0644 365 KYLRKLILYPLLKGVLARFDLLKSVKRSLTA 395 (396)
T ss_pred hhhhhhhHHHhhhccccHHHHHHHHHHHHhc
Confidence 34566777887777666 8888887776554
No 3
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=8e-43 Score=362.68 Aligned_cols=281 Identities=29% Similarity=0.461 Sum_probs=242.6
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
++|+++|..||+||+++|++.||+++.+++|+++..++ +.+++|.+. +.+++|++||+|||++
T Consensus 101 ~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~----------------~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 101 ASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAG----------------DDILEANVVILADGVN 163 (429)
T ss_pred CceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeC----------------CeEEECCEEEEccCcc
Confidence 47999999999999999999999999999999998765 667777754 2579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCC--------CCCcEEEEecCCCCCCCCceEEEEEcCCCeEEE
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILHTLGWPLDQKTYGGSFLYHMNDRQIAL 157 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~--------~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsV 157 (442)
|.+++++ ++. ...+++.+.+|+++++.+++... .+|.++++.|.|.. ...|+||+|+.++ .+||
T Consensus 164 s~v~~~l----g~~--~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~-g~~g~G~~~~~~d-~v~v 235 (429)
T PRK10015 164 SMLGRSL----GMV--PASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD-GLMGGGFLYTNKD-SISL 235 (429)
T ss_pred hhhhccc----CCC--cCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCC-CCCCceEEEEcCC-cEEE
Confidence 9999864 775 34567788999999988765432 25778889998864 4778999999854 7999
Q ss_pred EEEEecC-CCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccC--cccc
Q 013495 158 GLVVALN-YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNV--PKIK 234 (442)
Q Consensus 158 Glv~~~~-~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp--~~g~ 234 (442)
|+++.++ +.+...++++.+++|++||.+++++++++.++|+++.+|+||+.++|+++++|+++||||||++|| ++++
T Consensus 236 Gv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~ 315 (429)
T PRK10015 236 GLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVR 315 (429)
T ss_pred EEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCcccc
Confidence 9998764 344567899999999999999999999999999999999999988999999999999999999995 6999
Q ss_pred cHHHHHHHHHHHHHHHHhhhcc----CchHHHHHHHHHHhhhHHHHHHHHchhhhhh----hCChHHHHHHHHHHHHhc-
Q 013495 235 GTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE----YGLLPGLAICGLEHYILR- 305 (442)
Q Consensus 235 GI~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~- 305 (442)
||++||.||++|||+|.+++.. ...|+.|+++|+++|+.+||+.+|+++.+|. +..||.|+...+..++.-
T Consensus 316 Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PRK10015 316 GMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTID 395 (429)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999974 4679999999999999999999999999884 577899999999987765
Q ss_pred CCCCCc
Q 013495 306 GKSPYT 311 (442)
Q Consensus 306 ~~~~~~ 311 (442)
|.+..+
T Consensus 396 ~~~~~~ 401 (429)
T PRK10015 396 GKPNQP 401 (429)
T ss_pred CccchH
Confidence 444443
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=3.2e-40 Score=343.18 Aligned_cols=280 Identities=26% Similarity=0.453 Sum_probs=238.9
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+|.+.|.+||+||+++|++.||+|+.+++|++++.++ +.+++|.+. +.+++|++||+|||++|
T Consensus 102 ~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~----------------g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 102 SYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEAD----------------GDVIEAKTVILADGVNS 164 (428)
T ss_pred ceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcC----------------CcEEECCEEEEEeCCCH
Confidence 6999999999999999999999999999999998775 667676643 35799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCC--------CCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEE
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALG 158 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~--------~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVG 158 (442)
.++++ +|++. ...+..+++++++.+++++... .+|.++++.|.|.. ..+||+|+|+.. +.++||
T Consensus 165 ~l~~~----lgl~~--~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-g~~ggG~~~~~~-~~~svG 236 (428)
T PRK10157 165 ILAEK----LGMAK--RVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTD-GLMGGGFLYTNE-NTLSLG 236 (428)
T ss_pred HHHHH----cCCCC--CCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCC-CCcCceeEEEcC-CeEEEE
Confidence 88885 48762 4566788999999887764321 25678888898854 478899999975 589999
Q ss_pred EEEecCC-CCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccC--ccccc
Q 013495 159 LVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNV--PKIKG 235 (442)
Q Consensus 159 lv~~~~~-~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp--~~g~G 235 (442)
+++.++. .+...++++++++|++||.+++++++++.++|+++.+|.+|+...|+++++|+++|||||||+|| ++++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~G 316 (428)
T PRK10157 237 LVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRG 316 (428)
T ss_pred EEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeee
Confidence 9988764 33446789999999999999999999999999999999999988899999999999999999998 59999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc----CchHHHHHHHHHHhhhHHHHHHHHchhhhhh----hCChHHHHHHHHHHHHhc-C
Q 013495 236 THTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE----YGLLPGLAICGLEHYILR-G 306 (442)
Q Consensus 236 I~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~-~ 306 (442)
|++||.||++|||+|.+++.. ...|+.|+++++++ +.+||+..|++..++. +..||.|+..++..++.. |
T Consensus 317 i~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (428)
T PRK10157 317 MDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDG 395 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHhcCccHHHHHHHHHHHHHHHheeeCC
Confidence 999999999999999999875 35799999999999 5899999999998884 578999999999887764 5
Q ss_pred CCCCcc
Q 013495 307 KSPYTL 312 (442)
Q Consensus 307 ~~~~~~ 312 (442)
.+++++
T Consensus 396 ~~~~~~ 401 (428)
T PRK10157 396 SAPELM 401 (428)
T ss_pred cCchhH
Confidence 665654
No 5
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=100.00 E-value=2.6e-42 Score=287.39 Aligned_cols=109 Identities=61% Similarity=1.059 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHhcCCCCCcccCCCCccccchhhhcCCCCCCCCCCCCcCcCcccceeecCccccCCCCCCeEecCC
Q 013495 289 GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDP 368 (442)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~y~~pdg~l~fd~~~~~~~~~~~~~~d~~~Hl~v~d~ 368 (442)
|+|+||+++++++++++|+.||||+|.++|+++|+|+++++||+||||||+||||++||||+|||+|+||||+||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCccccccccccceEEEecC
Q 013495 369 KIPELVNLPEYAGPESRYCPARVYEYVPD 397 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~ 397 (442)
++|+..|+++|++||+|||||+|||++++
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE~v~~ 109 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYEIVED 109 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EEEE--
T ss_pred ChhhhhhhhhhcChhhhcCcceeEEEecc
Confidence 99999999999999999999999999875
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.97 E-value=6.5e-29 Score=259.58 Aligned_cols=248 Identities=19% Similarity=0.210 Sum_probs=180.3
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCC-CcEEEEEeCCccc-cCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMGI-AKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~-g~v~gV~t~~~g~-~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+++|..||++|+++|++.||+++.+ ++.++..+++ +..+.|++.+... ..+|+ +.+++|++||+|||++|
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGT-------PKTLEVDAVIGADGANS 199 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCC-------ccEEEeCEEEEcCCcch
Confidence 4999999999999999999999876 5777764321 2223444432100 01121 35899999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCC--CCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~--~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
.+++++ ++. ...+.+++++.+.+++.. ..++.+..++|..+. ..+|+|+||+++ .++||++....
T Consensus 200 ~vrr~l----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--p~~Y~WifP~g~-~~~VG~g~~~~ 266 (450)
T PLN00093 200 RVAKDI----DAG------DYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVS--PDFYGWVFPKCD-HVAVGTGTVVN 266 (450)
T ss_pred HHHHHh----CCC------CcceeEEEEEEEeCChhhccccCCeEEEEeCCCCC--CCceEEEEECCC-cEEEEEEEccC
Confidence 999965 654 134678888777766532 234556666665433 246889999985 78999975321
Q ss_pred CCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 165 YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
..++.+.++.+... +...+.+++.+...+..||.+. .++.+.+|++|||||||++||++|+||++||+||+
T Consensus 267 ----~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~ip~~~---~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~ 337 (450)
T PLN00093 267 ----KPAIKKYQRATRNR--AKDKIAGGKIIRVEAHPIPEHP---RPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGR 337 (450)
T ss_pred ----CCChHHHHHHHHHH--hhhhcCCCeEEEEEEEEccccc---ccceeCCCcEEEeccccCCCccccccHHHHHHHHH
Confidence 12334444444321 2234566777887788888742 45778899999999999999999999999999999
Q ss_pred HHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 245 LAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 245 lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
+|||+|.+++.. ...|++|+++|++.| +++++....++.+|.
T Consensus 338 ~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~-g~~~~~~~~l~~~~~ 385 (450)
T PLN00093 338 MCAEAIVEGSENGTRMVDEADLREYLRKWDKKY-WPTYKVLDILQKVFY 385 (450)
T ss_pred HHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999998854 256899999999986 999999999998884
No 7
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=1.1e-28 Score=254.45 Aligned_cols=248 Identities=16% Similarity=0.185 Sum_probs=176.6
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEc-CCCcEEEEEeCCccc-cCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGI-AKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~-~~g~v~gV~t~~~g~-~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+++|..||++|+++|++.||+++.++ +.++... +.+.+++|+...... .+.|+ +.+++|++||+|||++|
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~-------~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT-------RCTLEVDAVIGADGANS 160 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC-------ccEEEeCEEEECCCcch
Confidence 59999999999999999999999885 7676542 123344555321000 00121 35899999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCC--CCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~--~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
.+++++ |+. ...+.+.+++.++++... +.+..+..++|..+. ..||+|+||+++ .++||++....
T Consensus 161 ~v~~~~----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--p~gY~WifP~~~-~~~VG~g~~~~ 227 (398)
T TIGR02028 161 RVAKEI----DAG------DYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVS--PDFYGWVFPKCD-HVAVGTGTVAA 227 (398)
T ss_pred HHHHHh----CCC------CcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCC--CCceEEEEECCC-eEEEEEEeCCC
Confidence 999965 664 124566777666666442 234445556664433 245899999985 67899975321
Q ss_pred CCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 165 YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
. ...+.|+.+.... ....+.+++.++..+..+|.+. .++++.+|++|||||||++||++|+||++||+||.
T Consensus 228 --~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~~---~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~ 298 (398)
T TIGR02028 228 --K---PEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEHP---RPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGR 298 (398)
T ss_pred --C---ccHHHHHHhhhhh-hhhccCCCcEEEEEEEeccccc---cccEECCCEEEEEcCCCCCCcccccchHHHHHHHH
Confidence 1 1223333332221 2233445677777778888853 35788999999999999999999999999999999
Q ss_pred HHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 245 LAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 245 lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
+||++|.+++.. ...|++|+++|++.| +++++....++.+|.
T Consensus 299 ~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~-~~~~~~~~~~~~~~~ 346 (398)
T TIGR02028 299 MCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEY-RPTYRVLDLLQRVFY 346 (398)
T ss_pred HHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999998854 255999999999985 999999999999885
No 8
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.96 E-value=1e-26 Score=238.79 Aligned_cols=244 Identities=17% Similarity=0.216 Sum_probs=175.1
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+++|..||++|+++|.+.||+++.+ +|+++..++++ +.|.+.+ |.++++. ...+++|++||+|||++|.+
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~-~~~~~~~------~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRT-PKKGAGG------EKGSVEADVVIGADGANSPV 157 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEe-ccccCCC------cceEEEeCEEEECCCCCcHH
Confidence 5999999999999999999999876 69998877643 3454432 1000110 12579999999999999999
Q ss_pred cHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCC--CCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 89 SEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 89 ar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~--~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
++++ ++.. +..+.+++++.+.++... ..++.+..+++.++.+ .+|+|+||.++ .++||++....
T Consensus 158 ~r~l----g~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~y~wv~P~~~-~~~vg~~~~~~-- 223 (388)
T TIGR02023 158 AKEL----GLPK-----NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSP--DFYGWVFPKGD-HIAVGTGTGTH-- 223 (388)
T ss_pred HHHc----CCCC-----CCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCC--CceEEEeeCCC-eeEEeEEECCC--
Confidence 8864 6641 234566777766555422 2344555555654432 36889999974 78999875421
Q ss_pred CCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHHHH
Q 013495 167 NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLA 246 (442)
Q Consensus 167 ~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lA 246 (442)
..++.+.++.|.+... +..++.+...+..+|.+ ..++.+.+++++||||||+++|++|+||++||.||.+|
T Consensus 224 --~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~~---~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~a 294 (388)
T TIGR02023 224 --GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPMK---PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMA 294 (388)
T ss_pred --CCCHHHHHHHHHHhhC----CCCceEeeeeeEecccc---ccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHH
Confidence 1245555566654321 33455555555667764 24567889999999999999999999999999999999
Q ss_pred HHHHHhhhcc--CchHHHHHHHHHHhhhHHHHHHHHchhhhh
Q 013495 247 AEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 286 (442)
Q Consensus 247 Aeai~~al~~--~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~ 286 (442)
|++|.+++.. ...|++|++.|++.| ++++...+.++.++
T Consensus 295 a~~i~~~l~~~~~~~L~~Y~~~~~~~~-~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 295 AQAIAEYLQNGDATDLRHYERKFMKLY-GTTFRVLRVLQMVY 335 (388)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999865 356999999999986 88887776666655
No 9
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.90 E-value=5.4e-22 Score=194.14 Aligned_cols=211 Identities=18% Similarity=0.181 Sum_probs=153.9
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
..+.++|.+|+++|.+++++.|++++.+++|+++..++++ + .|.+.+ .+.+++|++||+|+|.+
T Consensus 84 ~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~--------------~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 84 LAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRG--------------GEGTVTAKIVIGADGSR 147 (295)
T ss_pred cEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcC--------------ccEEEEeCEEEECCCcc
Confidence 3578999999999999999999999999999999887643 2 333321 13689999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+++++ ++. ..+..+..+++..+..+.....+....++.++... ..++.|++|++++.++||++...+.
T Consensus 148 s~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~v~~~~~~~~ 217 (295)
T TIGR02032 148 SIVAKKL----GLR----KEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS--PGGYGWVFPKGDGTANVGVGSRSAE 217 (295)
T ss_pred hHHHHhc----CCC----CCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC--CCceEEEEeCCCCeEEEeeeeccCC
Confidence 9987754 665 12344556666555555433334444455554332 2477899999988999999876432
Q ss_pred CCCCCChHHHHHHHH-hCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 166 HNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
+..++.+.++.|. .+|. +++.+.++.....+|... ..++.+.+|++++||||+++||++++|++.||.||.
T Consensus 218 --~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~ 289 (295)
T TIGR02032 218 --EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGD 289 (295)
T ss_pred --CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHH
Confidence 3346777777775 4454 444555554444566543 245788999999999999999999999999999999
Q ss_pred HHHHHH
Q 013495 245 LAAEAG 250 (442)
Q Consensus 245 lAAeai 250 (442)
+|||+|
T Consensus 290 ~aa~~~ 295 (295)
T TIGR02032 290 VAAEVI 295 (295)
T ss_pred HHHhhC
Confidence 999975
No 10
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.90 E-value=1.2e-24 Score=174.56 Aligned_cols=81 Identities=30% Similarity=0.647 Sum_probs=74.0
Q ss_pred CccccCCCCCCeEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCC-CCeeEEC
Q 013495 352 NTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTV 430 (442)
Q Consensus 352 ~~~~~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~-~~I~w~~ 430 (442)
|..+.+.+.+||+|+|++.|..|+ +.+|+.+|||++|++.++ | ++.|++++|+|||||++.||. ..|+|+|
T Consensus 16 n~~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~~~~~--g--~l~~~yegClECGTCRvlc~~~~~i~W~Y 87 (99)
T COG2440 16 NRYNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYKLIDD--G--KLRFDYEGCLECGTCRVLCPHSGLIQWRY 87 (99)
T ss_pred heeeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHeeECCC--C--cEEEeecCeeeccceeEecCCCcceEEec
Confidence 346667778999999999999997 589999999999999874 4 899999999999999999999 8899999
Q ss_pred cCCCCCCccc
Q 013495 431 PEGGGGPGYS 440 (442)
Q Consensus 431 p~gg~G~~y~ 440 (442)
|+||+||.||
T Consensus 88 Prgg~GI~yr 97 (99)
T COG2440 88 PRGGFGITYR 97 (99)
T ss_pred CCCCcCEEEe
Confidence 9999999997
No 11
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.87 E-value=6.6e-21 Score=199.56 Aligned_cols=218 Identities=19% Similarity=0.270 Sum_probs=135.7
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
+-+|+++|++||++|.+.|++.||+++.+ +|.++..+++|.|++|++.+ |.+|+||++|||+|.
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGR 209 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGG
T ss_pred CeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCc
Confidence 34799999999999999999999999998 48888888889999999875 579999999999999
Q ss_pred CCcccHHHHHhcCCcccccCCCce---EEEEEEEEEeeCCCC-CCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEE
Q 013495 85 RGSLSEKLIKNFKLREKSHAQHQT---YALGIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLV 160 (442)
Q Consensus 85 ~s~lar~l~~~~gl~~~~~~~~~~---~~~g~ke~~~~~~~~-~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv 160 (442)
+|.|+++++ +.+.+ ...... .++.+ .++... ..+-...+.. ..|+.|.+|+.++..+ |++
T Consensus 210 ~s~L~~~~L-~~~~~---~~~~~L~~d~av~~----~~~~~~~~~~~T~~~a~-------~~GW~W~IPL~~~~~~-G~V 273 (454)
T PF04820_consen 210 RSLLARKAL-KVGFR---DWSDWLPNDRAVAV----QVPNEDPPEPYTRSTAF-------EAGWIWYIPLQNRRGS-GYV 273 (454)
T ss_dssp G-CCCCCCT--EEEE---EETTTCEEEEEEEE----EEE-SSCTTSSEEEEEE-------SSEEEEEEEESSEEEE-EEE
T ss_pred cchhhHhhh-cCCCc---cccccccccEEEEE----ecCcCCCCCCceeEEec-------CCceEEEccCCCcceE-EEE
Confidence 999998621 11111 111211 23322 222221 2233333322 3476788888775555 998
Q ss_pred EecCCCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 161 VALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
...++. ++.+.++.|.++-........ ..+... .|. ..+..++|+++|||||||+||+.+.||++||
T Consensus 274 ~s~~~~----s~~~A~~~l~~~l~~~~~~~~-~~i~~~-----~g~---~~~~~~~n~vavGdAAgFiDPL~StGI~la~ 340 (454)
T PF04820_consen 274 YSSDFI----SDDEAEAELLAYLGGSPEAEP-RHIRFR-----SGR---RKQFWGKNCVAVGDAAGFIDPLESTGIHLAL 340 (454)
T ss_dssp EETTTS----HHHHHHHHHHHHHTCHCTTSC-EEEE-S------EE---ESSSEETTEEE-CCCTEE--GGGSHHHHHHH
T ss_pred eccccC----CHHHHHHHHHHhcchhhhcch-hhhccc-----ccc---hhhcccCCEEEEcchhhccCccccccHHHHH
Confidence 765543 344445555421111111111 222211 111 3578999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc----CchHHHHHHHHHHhh
Q 013495 241 KSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSW 271 (442)
Q Consensus 241 ~SG~lAAeai~~al~~----~~~l~~Y~~~~~~~~ 271 (442)
. |++++.+.|.. +..+..|++.+++.|
T Consensus 341 ~----aa~~l~~~l~~~~~~~~~~~~Yn~~~~~~~ 371 (454)
T PF04820_consen 341 S----AAEALAEALPDDDFSPAALDRYNRRMRREY 371 (454)
T ss_dssp H----HHHHHHHTHHCTTCCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 9 55555555543 345788888887654
No 12
>PRK11445 putative oxidoreductase; Provisional
Probab=99.83 E-value=1.4e-18 Score=176.28 Aligned_cols=246 Identities=18% Similarity=0.176 Sum_probs=145.1
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.++|.+||++|.+. .+.||+++.++.|.++..++++ +.|++.+ +|+ ..+++|++||+|||++|.
T Consensus 94 ~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~-----~g~-------~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 94 INIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG--YHVIFRA-----DGW-------EQHITARYLVGADGANSM 158 (351)
T ss_pred ccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE--EEEEEec-----CCc-------EEEEEeCEEEECCCCCcH
Confidence 469999999999985 5789999999999999887654 3354321 221 247999999999999999
Q ss_pred ccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCCC
Q 013495 88 LSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHN 167 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~~ 167 (442)
+++++ +.. ...++ ..++.+.+..+ .. .+... ..++. ....++.|++|.++ .+++|.+...
T Consensus 159 vr~~l----~~~---~~~~~--~~~~~~~~~~~-~~-~~~~~-~~f~~---~~~~~~~W~~p~~~-~~~~g~~~~~---- 218 (351)
T PRK11445 159 VRRHL----YPD---HQIRK--YVAIQQWFAEK-HP-VPFYS-CIFDN---EITDCYSWSISKDG-YFIFGGAYPM---- 218 (351)
T ss_pred HhHHh----cCC---Cchhh--EEEEEEEecCC-CC-CCCcc-eEEec---cCCCceEEEeCCCC-cEEecccccc----
Confidence 98865 332 11122 23444333221 11 12211 11111 11357889999855 5666643211
Q ss_pred CCCChHHHHHHHHhCCCccc-ccCCCeEEeecceeeccC-CCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHHH
Q 013495 168 PFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEG-GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGML 245 (442)
Q Consensus 168 ~~~~~~~~~~~~~~~P~i~~-~l~~~~~~~~ga~~i~~g-g~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~l 245 (442)
.++.+.++.+++. +.+ .+.-++.+......++.. .+. ......+|++|||||||+++|++|+||++||+||.+
T Consensus 219 --~~~~~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~ 293 (351)
T PRK11445 219 --KDGRERFETLKEK--LSAFGFQFGKPVKTEACTVLRPSRWQ-DFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARI 293 (351)
T ss_pred --cchHHHHHHHHHH--HHhcccccccccccccccccCccccc-ccccCCCCEEEEEcccCccCCccCccHHHHHHhHHH
Confidence 1122222222110 000 001112221111111111 111 112345899999999999999999999999999999
Q ss_pred HHHHHHhhhccCchHHHHHHHHHHhhhHHHHHHHHchhhhhhhCChHHHHHHHHHHHHhc
Q 013495 246 AAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYILR 305 (442)
Q Consensus 246 AAeai~~al~~~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (442)
||++|.+.. ...|+.|++.++.- .-+| +-+.++ .|-|-+..+..++.+
T Consensus 294 la~~l~~~~--~~~~~~y~~~~~~~--~~~~-----~~~~~~---~~~~~~~~~~~~~~~ 341 (351)
T PRK11445 294 LSEVLNKQP--EKLNTAYWRKTRKL--RLKL-----FGKILK---SPFMYNPALRKLIMR 341 (351)
T ss_pred HHHHHHhcc--cchHHHHHHHHHHH--HHHH-----HHHHhc---ChhhhhHHHHHHHHH
Confidence 999998765 45689999999872 2222 222222 466667777766654
No 13
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.82 E-value=4.4e-21 Score=156.23 Aligned_cols=80 Identities=20% Similarity=0.444 Sum_probs=66.9
Q ss_pred CccccCCCCCCeEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCC-eeEEC
Q 013495 352 NTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN-IKWTV 430 (442)
Q Consensus 352 ~~~~~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~-I~w~~ 430 (442)
++++.+++.+||+|++.. .+|. .++|+.+||++||+..++ | .+.+|+++|++||+|+++||..+ |+|+|
T Consensus 14 ~~y~vd~~~~HI~i~~~~--~~~~----~k~C~~aCPagA~~~~e~--G--~V~vd~e~CigCg~C~~~C~~~~~~~W~y 83 (95)
T PRK15449 14 NKFNVDEEHPHIVVKADA--DKQA----LELLVKACPAGLYKKQDD--G--SVRFDYAGCLECGTCRILGLGSALEQWEY 83 (95)
T ss_pred ceeECCCCCCcEEEcCCC--Cchh----hhHHHHHCCHhhcEeCCC--C--CEEEcCCCCCcchhhhhhcCCCCccCccC
Confidence 455556778999998754 3354 489999999999987543 5 79999999999999999999886 69999
Q ss_pred cCCCCCCcccC
Q 013495 431 PEGGGGPGYSV 441 (442)
Q Consensus 431 p~gg~G~~y~~ 441 (442)
|+||+||.||-
T Consensus 84 Prgg~GV~yr~ 94 (95)
T PRK15449 84 PRGTFGVEFRY 94 (95)
T ss_pred CCCCcCEEEec
Confidence 99999999983
No 14
>PLN02697 lycopene epsilon cyclase
Probab=99.80 E-value=2.4e-17 Score=175.03 Aligned_cols=241 Identities=13% Similarity=0.075 Sum_probs=154.7
Q ss_pred CE-EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GN-RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y-~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.| .|+|..|+++|++++++.|+++ .+++|.++..++++ +..|.+.+ +.+++|++||+|||++
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~d---------------G~~i~A~lVI~AdG~~ 247 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACED---------------GRVIPCRLATVASGAA 247 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcC---------------CcEEECCEEEECCCcC
Confidence 35 4999999999999999999998 56799998876544 33233332 4689999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCC---------CCCCCCceEEEEEcCCCeEE
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP---------LDQKTYGGSFLYHMNDRQIA 156 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~p---------l~~~~~Gggwiy~~~~~~vs 156 (442)
|. +.+ +........+.+.+.|+. ++++...++++..+ +++|- .....+++.|++|++++.+.
T Consensus 248 S~--rl~----~~~~~~~~~~~Q~a~Gi~--ve~~~~~~d~~~~v-lMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~ 318 (529)
T PLN02697 248 SG--RLL----QYEVGGPRVCVQTAYGVE--VEVENNPYDPSLMV-FMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVF 318 (529)
T ss_pred hh--hhh----ccccCCCCcccEEEEEEE--EEecCCCCCcchhe-eeccccccccccccccCCCceEEEEeecCCCeEE
Confidence 83 211 221000111234556653 34443234444322 22211 11123566788899999999
Q ss_pred E-EEEEecCCCCCCCC---hHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcc
Q 013495 157 L-GLVVALNYHNPFLN---PYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPK 232 (442)
Q Consensus 157 V-Glv~~~~~~~~~~~---~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~ 232 (442)
| +..... .+.++ ..+.++++..+.- +...+.++.....||.++. +|.. .+++++||||||+++|.|
T Consensus 319 VE~T~l~~---~~~l~~~~l~~~L~~~l~~~G----i~~~~i~~~E~g~iPm~g~--~~~~-~~~vl~vG~AAG~vhPsT 388 (529)
T PLN02697 319 FEETCLAS---KDAMPFDLLKKRLMSRLETMG----IRILKTYEEEWSYIPVGGS--LPNT-EQKNLAFGAAASMVHPAT 388 (529)
T ss_pred EEEeeecc---CCCCCHHHHHHHHHHHHHhCC----CCcceEEEEEeeeecCCCC--Cccc-CCCeeEeehhhcCCCCch
Confidence 8 764321 12222 2334444433322 2234555555667899873 4554 789999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHhhhccC-------------chHHHHHHHHHHhhhHHHHHHHHchhh
Q 013495 233 IKGTHTAMKSGMLAAEAGFGVLHED-------------SNMEIYWDTLQKSWVWQELQRARNYRP 284 (442)
Q Consensus 233 g~GI~~Am~SG~lAAeai~~al~~~-------------~~l~~Y~~~~~~~~~~~el~~~r~~~~ 284 (442)
|.||.++|.+|..||++|++++... ..++.|+++|...+ ++++......+.
T Consensus 389 Gy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~-~r~~~~~~~g~~ 452 (529)
T PLN02697 389 GYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQER-KRQRAFFLFGLA 452 (529)
T ss_pred hhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999642 23677888887763 555544433333
No 15
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.79 E-value=8.4e-17 Score=164.88 Aligned_cols=231 Identities=15% Similarity=0.080 Sum_probs=146.3
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.++|..|++.|.++|++.|++++. .+|.++..++ +..+.|++.+ +.+++|++||+|+|.+|.+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~-~~~~~v~~~~---------------g~~~~a~~VI~A~G~~s~~ 143 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADG-VALSTVYCAG---------------GQRIQARLVIDARGFGPLV 143 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecC-CceeEEEeCC---------------CCEEEeCEEEECCCCchhc
Confidence 599999999999999999999975 4788887663 3345666653 4589999999999999855
Q ss_pred cHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCC--------CCCceEEEEEcCCCeEEEEEE
Q 013495 89 SEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ--------KTYGGSFLYHMNDRQIALGLV 160 (442)
Q Consensus 89 ar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~--------~~~Gggwiy~~~~~~vsVGlv 160 (442)
.+. ..+.. . ..+...|+. ++++...+.+...+ ++.+.... ..+++.|++|.+++.+.|+..
T Consensus 144 ~~~---~~~~~----~-~~q~~~G~~--~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~ 212 (388)
T TIGR01790 144 QYV---RFPLN----V-GFQVAYGVE--ARLSRPPHGPSSMV-IMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEET 212 (388)
T ss_pred ccc---cCCCC----c-eEEEEEEEE--EEEcCCCCCCCceE-EEeccccccccccccCCCCceEEEeecCCCeEEEEec
Confidence 321 11111 1 123345553 34443333333222 12221111 012367889998888888754
Q ss_pred EecCCCCCCCChH---HHHHHHH-hCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccH
Q 013495 161 VALNYHNPFLNPY---EEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGT 236 (442)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~~~~-~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI 236 (442)
...+ .+.++.. +.++++. ... +...+.+......+|.++.. +. +.+++++||||||+++|++|+||
T Consensus 213 ~~~~--~~~~~~~~~~~~l~~~~~~~g-----~~~~~i~~~~~~~iP~~~~~--~~-~~~rv~liGdAAg~~~P~tG~Gi 282 (388)
T TIGR01790 213 SLAD--RPALPRDRLRQRILARLNAQG-----WQIKTIEEEEWGALPVGLPG--PF-LPQRVAAFGAAAGMVHPTTGYSV 282 (388)
T ss_pred cccC--CCCCCHHHHHHHHHHHHHHcC-----CeeeEEEeeeeEEEecccCC--Cc-cCCCeeeeechhcCcCCcccccH
Confidence 3211 1222222 2333332 221 11233344344567776543 23 78899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHHhhhHHHHHH
Q 013495 237 HTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQR 278 (442)
Q Consensus 237 ~~Am~SG~lAAeai~~al~~--~~~l~~Y~~~~~~~~~~~el~~ 278 (442)
++||.+|..+|+++.+++.. ...++.|++.++..+ .+++..
T Consensus 283 ~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 325 (388)
T TIGR01790 283 ARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTER-RRQRYF 325 (388)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHH-HHHHHH
Confidence 99999999999999998864 456788887776654 444433
No 16
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.77 E-value=9.2e-18 Score=167.77 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=137.4
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.++++|..|+++|.+.|++.|++|+.++++.++..++++..+.+... .+|+ ..+++||+||+|||++|
T Consensus 105 ~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~-----~~g~-------~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 105 GHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG-----EDGE-------EETIEADLVVGADGAHS 172 (356)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET-----CTCE-------EEEEEESEEEE-SGTT-
T ss_pred chhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc-----cCCc-------eeEEEEeeeecccCccc
Confidence 47899999999999999999999999999999988875422222222 2331 35899999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEE-eeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCC-CeEEEEEEEecC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMND-RQIALGLVVALN 164 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~-~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~-~~vsVGlv~~~~ 164 (442)
.+++++ +... ......+..+...+. +.+....... ..+++.+ ..++.|++|..+ +..++-+....+
T Consensus 173 ~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~ 240 (356)
T PF01494_consen 173 KVRKQL----GIDR--PGPDTVYRWGWFGIVFDSDLSDPWED--HCFIYSP----PSGGFAIIPLENGDRSRFVWFLPFD 240 (356)
T ss_dssp HHHHHT----TGGE--EEEEEEEEEEEEEEEEECHSHTTTSC--EEEEEEE----TTEEEEEEEETTTTEEEEEEEEETT
T ss_pred chhhhc----cccc--cCcccccccccccccccccccccccc--ccccccc----cccceeEeeccCCccceEEEeeecc
Confidence 998865 5431 111111222221111 1111111112 2222221 234447899876 444444444443
Q ss_pred CCCCCC----ChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 165 YHNPFL----NPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 165 ~~~~~~----~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
...... .+.+.++.+...... .... .+...... .+... ...++.+.++++||||||+.++|+.|+|++.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~--~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai 315 (356)
T PF01494_consen 241 ESKEERPEEFSPEELFANLPEIFGP-DLLE-TEIDEISA--WPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAI 315 (356)
T ss_dssp TTTCCSTHCHHHHHHHHHHHHHHHT-CHHH-HEEEEEEE--EEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHH
T ss_pred ccccccccccccccccccccccccc-cccc-cccccccc--ccccc-ccccccccceeEEeccceeeecccccCCCCccc
Confidence 221111 122333333221100 0111 12222111 11111 113466778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc---CchHHHHHHHHHHh
Q 013495 241 KSGMLAAEAGFGVLHE---DSNMEIYWDTLQKS 270 (442)
Q Consensus 241 ~SG~lAAeai~~al~~---~~~l~~Y~~~~~~~ 270 (442)
.++..+|+.+...+.+ ++.|+.|++..+..
T Consensus 316 ~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~ 348 (356)
T PF01494_consen 316 EDAAALAELLAAALKGEASEEALKAYEQERRPR 348 (356)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999988764 45689999888764
No 17
>PRK07045 putative monooxygenase; Reviewed
Probab=99.75 E-value=2.9e-16 Score=161.10 Aligned_cols=248 Identities=12% Similarity=0.098 Sum_probs=152.0
Q ss_pred EEEehHHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+.++|..|+++|.+++.+ .|++++.+++|+++..++++.++.|++.+ |.+++|++||+|||.+|
T Consensus 101 ~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------------g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 101 ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD---------------GERVAPTVLVGADGARS 165 (388)
T ss_pred EEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC---------------CCEEECCEEEECCCCCh
Confidence 357999999999999864 68999999999999988767666777653 46899999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
.+++++ +++........+....+. +..++.. +.....+++. ..|..|+||.+++..++.+....+..
T Consensus 166 ~vR~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~~ 232 (388)
T PRK07045 166 MIRDDV---LRMPAERVPYATPMAFGT---IALTDSV--RECNRLYVDS-----NQGLAYFYPIGDQATRLVVSFPADEM 232 (388)
T ss_pred HHHHHh---hCCCcccCCCCcceeEEE---EeccCCc--cccceEEEcC-----CCceEEEEEcCCCcEEEEEEeccccc
Confidence 998864 244310011122223332 2222211 1111222221 23556889998777888776543321
Q ss_pred CCC---CChHHHHHHHHhC--CCcccccCCC-eEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 167 NPF---LNPYEEFQKFKHH--PAIKPLLEGG-TVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 167 ~~~---~~~~~~~~~~~~~--P~i~~~l~~~-~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
... ....+..+++... |.+...++.- ....+. ..+.... .+++++.++++||||||+.++|+.|+|++.||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 309 (388)
T PRK07045 233 QGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLGRM-NLDRYHKRNVVLLGDAAHSIHPITGQGMNLAI 309 (388)
T ss_pred hhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecCcc-ccccccCCCEEEEEccccccCCCccccHHHHH
Confidence 111 1122222333321 2222222110 001111 1122221 24577889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc----CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 241 KSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 241 ~SG~lAAeai~~al~~----~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
.++..+|+++..++.+ .+.|+.|++..+.. ...=....+.+...|+
T Consensus 310 ~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 359 (388)
T PRK07045 310 EDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTYH 359 (388)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhcc
Confidence 9999999999877643 35788999877653 1222333444555553
No 18
>PLN02463 lycopene beta cyclase
Probab=99.75 E-value=2.7e-16 Score=164.30 Aligned_cols=211 Identities=18% Similarity=0.144 Sum_probs=136.6
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.|+|.+|+++|.+++++.||+++. .+|.++..++++ +.|++.+ |.+++|++||+|+|.+|.+
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~--~~V~~~d---------------G~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESK--SLVVCDD---------------GVKIQASLVLDATGFSRCL 171 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCe--EEEEECC---------------CCEEEcCEEEECcCCCcCc
Confidence 589999999999999999999974 689999876533 4677654 4689999999999999887
Q ss_pred cHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEE-------EEecCC----CCCCCCceEEEEEcCCCeEEE
Q 013495 89 SEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEIL-------HTLGWP----LDQKTYGGSFLYHMNDRQIAL 157 (442)
Q Consensus 89 ar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~-------~~~G~p----l~~~~~Gggwiy~~~~~~vsV 157 (442)
.+. .-. .....+.+.|+. .+++...++++..+ |..+.| .....+++.|++|++++.+.|
T Consensus 172 ~~~-----~~~---~~~g~Q~a~Gi~--~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~v 241 (447)
T PLN02463 172 VQY-----DKP---FNPGYQVAYGIL--AEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFL 241 (447)
T ss_pred cCC-----CCC---CCccceeeeeEE--eecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEE
Confidence 541 111 111123344543 33332222222111 111100 011125677999999999888
Q ss_pred EEEEecCCCCCCCC---hHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccc
Q 013495 158 GLVVALNYHNPFLN---PYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIK 234 (442)
Q Consensus 158 Glv~~~~~~~~~~~---~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~ 234 (442)
+...-.. .+.++ ..+.+.++..+.-+ +..+..+.....||.|+.. | ...+++++||||||+++|.+|+
T Consensus 242 EeT~l~s--~~~~~~~~lk~~L~~~l~~~Gi----~~~~i~~~E~~~IPmg~~~--~-~~~~~~~~~G~aag~v~p~tG~ 312 (447)
T PLN02463 242 EETSLVA--RPGLPMDDIQERMVARLRHLGI----KVKSVEEDEKCVIPMGGPL--P-VIPQRVLGIGGTAGMVHPSTGY 312 (447)
T ss_pred Eeeeeec--CCCCCHHHHHHHHHHHHHHCCC----CcceeeeeeeeEeeCCCCC--C-CCCCCEEEecchhcCcCCCccc
Confidence 8753221 12222 22233333222111 2234444445578998753 3 3467999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhhcc
Q 013495 235 GTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 235 GI~~Am~SG~lAAeai~~al~~ 256 (442)
||.+||.+|.+||++|.+++..
T Consensus 313 ~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 313 MVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999974
No 19
>PRK06185 hypothetical protein; Provisional
Probab=99.75 E-value=2.4e-16 Score=162.51 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=148.6
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.+++.+..|.++|.+++++. |++++.+++|.++..++ +.+++|.+.. .+| ..+++|++||+|||.+
T Consensus 102 ~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~----~~g--------~~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 102 IAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRART----PDG--------PGEIRADLVVGADGRH 168 (407)
T ss_pred EEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEc----CCC--------cEEEEeCEEEECCCCc
Confidence 46899999999999999875 89999999999998876 5677776542 122 1479999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+.+++ |+.. .........+ ...++.....++..++.++ ..|..+++|.+ +.++|+...+.+.
T Consensus 169 S~vr~~~----gi~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~g~~~llP~~-~~~~i~~~~~~~~ 232 (407)
T PRK06185 169 SRVRALA----GLEV-REFGAPMDVL----WFRLPREPDDPESLMGRFG------PGQGLIMIDRG-DYWQCGYVIPKGG 232 (407)
T ss_pred hHHHHHc----CCCc-cccCCCceeE----EEecCCCCCCCcccceEec------CCcEEEEEcCC-CeEEEEEEecCCC
Confidence 9987754 6652 1111111111 1223322111222222221 12445677876 6889988876542
Q ss_pred CCCC--CChHHHHHHHH-hCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHH
Q 013495 166 HNPF--LNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKS 242 (442)
Q Consensus 166 ~~~~--~~~~~~~~~~~-~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~S 242 (442)
.... .+..++.+.+. ..|.+.+.+...+... .....|.. ....++.+.+|++|+||||+.++|+.|+|++.||.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~D 310 (407)
T PRK06185 233 YAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDVR-VDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQD 310 (407)
T ss_pred chhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEEe-ccccccccCCCeEEEeccccccCcccccchhHHHHH
Confidence 2111 12223334443 3455544443211111 01112221 122457888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc----CchHHHHHHHHHHh
Q 013495 243 GMLAAEAGFGVLHE----DSNMEIYWDTLQKS 270 (442)
Q Consensus 243 G~lAAeai~~al~~----~~~l~~Y~~~~~~~ 270 (442)
+..+|+.+.+++.. ...|+.|++..+..
T Consensus 311 a~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~ 342 (407)
T PRK06185 311 AVAAANILAEPLRRGRVSDRDLAAVQRRREFP 342 (407)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHhhhH
Confidence 99999999987754 25688999876653
No 20
>PRK09126 hypothetical protein; Provisional
Probab=99.74 E-value=2e-16 Score=162.27 Aligned_cols=244 Identities=15% Similarity=0.071 Sum_probs=149.8
Q ss_pred CEEEehHHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|.++|..+++.|.+++.+ .|++|+.+++|+++..++++ +.|.+.+ |.+++|++||+|||.+
T Consensus 104 g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~---------------g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 104 GYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLAN---------------GRRLTARLLVAADSRF 166 (392)
T ss_pred eEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcC---------------CCEEEeCEEEEeCCCC
Confidence 5889999999999998754 79999999999999876533 4566543 4589999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+.+.+ ++........+...++ .+..+. .......++++. .+..|+||.+++.+++++....+.
T Consensus 167 S~vr~~~----g~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~------~~~~~~~P~~~~~~~~~~~~~~~~ 231 (392)
T PRK09126 167 SATRRQL----GIGADMHDFGRTMLVC---RMRHEL--PHHHTAWEWFGY------GQTLALLPLNGHLSSLVLTLPPDQ 231 (392)
T ss_pred chhhHhc----CCCccccccCCeEEEE---EEeccC--CCCCEEEEEecC------CCCeEEeECCCCCEEEEEECCHHH
Confidence 9998864 6542001111111111 112111 112333444331 234588999888888888654321
Q ss_pred C-C-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 166 H-N-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 166 ~-~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
. . ...++.+..+.+.. .+...+...+... .....|... ...++++.++++|+||||++++|++|+|++.||.+|
T Consensus 232 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da 307 (392)
T PRK09126 232 IEALLALDPEAFAAEVTA--RFKGRLGAMRLVS-SRHAYPLVA-VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQ 307 (392)
T ss_pred HHHHHcCCHHHHHHHHHH--HHhhhccCeEEcC-CCcEeechH-HHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHH
Confidence 0 0 01222222222211 0011111111110 001111111 113567889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 244 MLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 244 ~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
..+|+++.+++.. .+.|+.|++.++... .+=+...+.+..+|.
T Consensus 308 ~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~-~~~~~~~~~~~~~~~ 356 (392)
T PRK09126 308 DILARLILAAARRGQDIGAASLLERYERKHRLAT-RPLYHATNAIAALYT 356 (392)
T ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 9999999887732 346899999988753 443444555555554
No 21
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.74 E-value=3.7e-16 Score=159.24 Aligned_cols=243 Identities=14% Similarity=0.082 Sum_probs=154.5
Q ss_pred CCEEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.+|.++|.+|++.|.+++++.| ++|+.+++|+++..+++ . +.|.+.+ |.+++|++||+|||.
T Consensus 99 ~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~~~---------------g~~~~~~~vi~adG~ 161 (385)
T TIGR01988 99 LGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTLDD---------------GQQLRARLLVGADGA 161 (385)
T ss_pred cEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEECC---------------CCEEEeeEEEEeCCC
Confidence 3589999999999999999999 99999999999987763 3 3465543 357999999999999
Q ss_pred CCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 85 RGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 85 ~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
+|.+.+++ +++. ....... .++...+..+.. .+......++ ..|..|+||.+++.+++++.+...
T Consensus 162 ~S~vr~~l----~~~~-~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~------~~g~~~~~p~~~~~~~~~~~~~~~ 226 (385)
T TIGR01988 162 NSKVRQLA----GIPT-TGWDYGQ--SAVVANVKHERP--HQGTAWERFT------PTGPLALLPLPDNRSSLVWTLPPE 226 (385)
T ss_pred CCHHHHHc----CCCc-cccccCC--eEEEEEEEecCC--CCCEEEEEec------CCCCEEEeECCCCCeEEEEECCHH
Confidence 99988864 5542 1111111 122212222211 1222222221 125567899988888888875432
Q ss_pred C-CC-CCCChHHHHHHHHhC--CCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 165 Y-HN-PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 165 ~-~~-~~~~~~~~~~~~~~~--P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
. .. ...++.+..+.+.+. +...... . .......|... ...++.+.++++|+||||+.++|+.|+|+..||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai 300 (385)
T TIGR01988 227 EAERLLALSDEEFLAELQRAFGSRLGAIT----L-VGERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGL 300 (385)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCceE----e-ccCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhH
Confidence 1 10 112333333333221 1111110 0 00111222211 124567889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 241 KSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 241 ~SG~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
.++..+|+.+.+++.. ...|+.|++..+.. ...-+..++.+...|.
T Consensus 301 ~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 301 RDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLFS 352 (385)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999887642 36789999988875 3444555666666664
No 22
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.73 E-value=4.1e-16 Score=160.40 Aligned_cols=243 Identities=16% Similarity=0.110 Sum_probs=144.8
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+|+++|..|++.|.+++++.|++++.+++|+++..++++ +.|.+.+ +.+++|++||+|||.+|
T Consensus 105 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~---------------g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 105 AHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSD---------------GSVLEARLLVAADGARS 167 (403)
T ss_pred EEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECC---------------CCEEEeCEEEEcCCCCh
Confidence 368999999999999999999999999999999876633 4466543 35799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
.+.+++ |++. ........ ++......+. ...+.....+. ..|..|++|.+++.+++.+....+..
T Consensus 168 ~vr~~~----g~~~-~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~------~~g~~~~~Pl~~~~~~~~~~~~~~~~ 232 (403)
T PRK07333 168 KLRELA----GIKT-VGWDYGQS--GIVCTVEHER--PHGGRAEEHFL------PAGPFAILPLKGNRSSLVWTERTADA 232 (403)
T ss_pred HHHHHc----CCCc-ccccCCCE--EEEEEEEcCC--CCCCEEEEEeC------CCCceEEeECCCCCeEEEEECCHHHH
Confidence 987754 6652 11111111 1111112221 11222222221 23566889998888887654332110
Q ss_pred CC--CCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 167 NP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 167 ~~--~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
.. ........+.+.+. +...+..-+... .....+. ....+++++.++++||||||+.++|+.|+|+..||.++.
T Consensus 233 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~ 308 (403)
T PRK07333 233 ERLVALDDLVFEAELEQR--FGHRLGELKVLG-KRRAFPL-GLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVA 308 (403)
T ss_pred HHHHCCCHHHHHHHHHHH--hhhhcCceEecc-CccEeec-hhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHH
Confidence 00 01111112222110 001111001110 0011222 112345778899999999999999999999999999999
Q ss_pred HHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHH-HHHchhhhhh
Q 013495 245 LAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQ-RARNYRPAFE 287 (442)
Q Consensus 245 lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~-~~r~~~~~~~ 287 (442)
.+|+.+...+.. ...|+.|++..+. ....+. ..+.+..+|+
T Consensus 309 ~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~--~~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 309 ALAEVVVEAARLGLDIGSLDVLERYQRWRRF--DTVRMGVTTDVLNRLFS 356 (403)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHc
Confidence 999999877631 4678999974432 223232 3344554553
No 23
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.72 E-value=1.3e-15 Score=155.81 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=144.3
Q ss_pred CEEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|++.|.+|++.|.+++++.+ ++++.+++++++..++++ +.|.+.+ + +++|++||+|||.+
T Consensus 98 g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~---------------~-~~~adlvIgADG~~ 159 (374)
T PRK06617 98 GYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDD---------------K-QIKCNLLIICDGAN 159 (374)
T ss_pred EEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcC---------------C-EEeeCEEEEeCCCC
Confidence 599999999999999999986 999999999999887643 3455542 3 89999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCc-EEEEecCCCCCCCCceEEEEEcCCCe-EEEEEEEec
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGE-ILHTLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVAL 163 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~-~~~~~G~pl~~~~~Gggwiy~~~~~~-vsVGlv~~~ 163 (442)
|.+.+.+ +... ...+ |..++. +.++.+....+. ..++. ..|..+++|+.++. .++...+..
T Consensus 160 S~vR~~l----~~~~--~~~~--y~~~~~--~~v~~~~~~~~~~~~~~~-------~~g~~~~lPl~~~~~~~~vw~~~~ 222 (374)
T PRK06617 160 SKVRSHY----FANE--IEKP--YQTALT--FNIKHEKPHENCAMEHFL-------PLGPFALLPLKDQYASSVIWSTSS 222 (374)
T ss_pred chhHHhc----CCCc--cccc--CCeEEE--EEEeccCCCCCEEEEEec-------CCCCEEEeECCCCCeEEEEEeCCH
Confidence 9998864 5441 1111 222222 333322222232 22331 12445888998765 344333321
Q ss_pred CCCCCC-CChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHH
Q 013495 164 NYHNPF-LNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKS 242 (442)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~S 242 (442)
+..... ..+.+++..+.+. .+...+..-. ........|.... ..++++.++++|+||||+.+.|+.|+|++.||..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~D 299 (374)
T PRK06617 223 DQAALIVNLPVEEVRFLTQR-NAGNSLGKIT-IDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKD 299 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHH-hhchhcCcee-eccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHH
Confidence 100000 1122333322221 1112221100 0100111222211 2457888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 243 GMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 243 G~lAAeai~~al~~~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
+...|+.+. ....|++|++..+.. ...=+...+.+..+|+
T Consensus 300 a~~La~~L~----~~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 300 IEILSMIVS----NNGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred HHHHHHHHc----CcchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 999998873 235799999887664 2333445555666664
No 24
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.72 E-value=6.1e-16 Score=157.99 Aligned_cols=242 Identities=16% Similarity=0.165 Sum_probs=147.6
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|.++|..|++.|.+++++. |++++.+++|+++..++++ +.|.+.+ +.+++|++||+|||.+
T Consensus 99 ~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 99 GYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDN---------------GQQLRAKLLIAADGAN 161 (382)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECC---------------CCEEEeeEEEEecCCC
Confidence 58999999999999999984 9999999999999877644 3455542 3579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCC-eEEEEEEEecC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR-QIALGLVVALN 164 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~-~vsVGlv~~~~ 164 (442)
|.+++++ ++.. ....... ..+...+..+.. ........++ ..|..+++|.+++ ..++.+....+
T Consensus 162 S~vr~~l----~~~~-~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~------~~g~~~~~p~~~~~~~~~~~~~~~~ 226 (382)
T TIGR01984 162 SKVRELL----SIPT-EEHDYNQ--TALIANIRHEQP--HQGCAFERFT------PHGPLALLPLKDNYRSSLVWCLPSK 226 (382)
T ss_pred hHHHHHc----CCCC-cccccCC--EEEEEEEEecCC--CCCEEEEeeC------CCCCeEECcCCCCCCEEEEEECCHH
Confidence 9988754 5542 1111111 222222222211 1222222222 1233466787776 66665544322
Q ss_pred CCC--CCCChHHHHHHHHhC--CCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 165 YHN--PFLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 165 ~~~--~~~~~~~~~~~~~~~--P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
... ...+..+..+.+... +.+.....-.....+ +... ...++...++++||||||+.++|+.|+|+..||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al 300 (382)
T TIGR01984 227 QADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTY-----PLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGL 300 (382)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEe-----ecch-hhhhheecCCEEEEeecccccCCccccchhhhH
Confidence 100 011222223333221 111111111111111 1111 124567789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc---CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 241 KSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 241 ~SG~lAAeai~~al~~---~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
.++..+|+++..++.. ...|..|++..+... ..=+..++.+..+|.
T Consensus 301 ~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~-~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 301 RDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQ-FITIGLTDGLNRLFS 349 (382)
T ss_pred HHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 9999999999876522 367999999887653 333455566666664
No 25
>PRK07538 hypothetical protein; Provisional
Probab=99.70 E-value=5.8e-15 Score=152.95 Aligned_cols=242 Identities=16% Similarity=0.176 Sum_probs=142.9
Q ss_pred CEEEehHHHHHHHHHHHHH-CCc-EEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 7 GNRKSLSQLVRWLGGKAEE-LGV-EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~-~Gv-ei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.+.++|.+|++.|+++|.+ .|+ +|+.+++|+++..++++.++.+... .+| .+.+++||+||+|||.
T Consensus 96 ~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~-----~~g-------~~~~~~adlvIgADG~ 163 (413)
T PRK07538 96 QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDR-----AGG-------DLVSVRGDVLIGADGI 163 (413)
T ss_pred eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEecc-----CCC-------ccceEEeeEEEECCCC
Confidence 4679999999999999876 585 6999999999988776644444322 122 1368999999999999
Q ss_pred CCcccHHHHHhcCCcccccCCCceEEEEEEEEEe--eCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCC-----eEEE
Q 013495 85 RGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWE--IDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR-----QIAL 157 (442)
Q Consensus 85 ~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~--~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~-----~vsV 157 (442)
+|.+.+++ +.. ...+. | .|+- .|. ++......+....+.|.. .+..++||..++ ...+
T Consensus 164 ~S~vR~~l----~~~---~~~~~-~-~g~~-~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~p~~~~~~~~g~~~~ 228 (413)
T PRK07538 164 HSAVRAQL----YPD---EGPPR-W-NGVM-MWRGVTEAPPFLTGRSMVMAGHL-----DGKLVVYPISEPVDADGRQLI 228 (413)
T ss_pred CHHHhhhh----cCC---CCCCc-c-cceE-EEEEeecCccccCCCcEEEEcCC-----CCEEEEEECCCCcccCCceEE
Confidence 99998865 222 11121 1 1111 111 111112223223333321 123456665432 1233
Q ss_pred EEEEecCC-----CC-----CCCChHHHHHHHHhC-C---CcccccCC-CeEEeecceeeccCCCccCCccccCCEEEEc
Q 013495 158 GLVVALNY-----HN-----PFLNPYEEFQKFKHH-P---AIKPLLEG-GTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 222 (442)
Q Consensus 158 Glv~~~~~-----~~-----~~~~~~~~~~~~~~~-P---~i~~~l~~-~~~~~~ga~~i~~gg~~~~~~~~~~g~llvG 222 (442)
.+++.... .+ ......+.++.|... + .+..++.. .....| |......+++.+.++++|||
T Consensus 229 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----p~~~~~~~~~w~~grv~LvG 303 (413)
T PRK07538 229 NWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEY-----PMVDRDPLPRWTRGRVTLLG 303 (413)
T ss_pred EEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeec-----cccccCCCCcccCCcEEEEe
Confidence 34332211 01 111223333444321 1 12233332 222222 22222235677889999999
Q ss_pred cCCCcccCcccccHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHhhhHHHHHHHHc
Q 013495 223 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARN 281 (442)
Q Consensus 223 DAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~~~~~~el~~~r~ 281 (442)
|||+.+.|+.|+|+..||.++..+|+.+.+.-.....|+.|++.++.. ..+.+...|.
T Consensus 304 DAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~~~~~aL~~Ye~~R~~~-~~~~~~~s~~ 361 (413)
T PRK07538 304 DAAHPMYPVGSNGASQAILDARALADALAAHGDPEAALAAYEAERRPA-TAQIVLANRL 361 (413)
T ss_pred eccCcCCCCCcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhHH-HHHHHHHhhh
Confidence 999999999999999999999999999976311146799999988875 4565655555
No 26
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.70 E-value=5.2e-15 Score=151.67 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=150.6
Q ss_pred CEEEehHHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|.++|..|++.|.+.+++ .|++++.+++|+++..++++ +.|++.+ +.+++|++||+|||.+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 106 GYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDD---------------GETLTGRLLVAADGSH 168 (395)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECC---------------CCEEEeCEEEEecCCC
Confidence 5789999999999999877 48999999999999876533 3466653 3579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+.+.+ ++.. ...+.. .+.+...+.... ...+...+.+. ..|..+++|.+++.+++.+....+-
T Consensus 169 S~vr~~~----~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~------~~g~~~~~p~~~g~~~~~~~~~~~~ 233 (395)
T PRK05732 169 SALREAL----GIDW--QQHPYE-QVAVIANVTTSE--AHQGRAFERFT------EHGPLALLPMSDGRCSLVWCHPLED 233 (395)
T ss_pred hhhHHhh----CCCc--cceecC-CEEEEEEEEecC--CCCCEEEEeec------CCCCEEEeECCCCCeEEEEECCHHH
Confidence 9988754 5541 111111 111221222211 11222222221 1244578899888877766543321
Q ss_pred CC--CCCChHHHHHHHHhC-C-CcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHH
Q 013495 166 HN--PFLNPYEEFQKFKHH-P-AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMK 241 (442)
Q Consensus 166 ~~--~~~~~~~~~~~~~~~-P-~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~ 241 (442)
.. ...+..+.++.+... + .+..+....+...| .+.. ...++++.++++|+||||+.++|+.|+|+..||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~---~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~ 307 (395)
T PRK05732 234 AEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAY---PLAL---VTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLR 307 (395)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcceeecCCccee---cccc---cchhhhccCcEEEEeecccccCCccccccchHHH
Confidence 00 112223333333321 1 01111111111111 1111 1234567899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 242 SGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 242 SG~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
++..+|+.+...+.. ...|+.|++.++... ...+..++.+..+|.
T Consensus 308 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~-~~~~~~~~~~~~~~~ 358 (395)
T PRK05732 308 DVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDR-EATIGFTDGLVRLFA 358 (395)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999999876643 146999999888753 555667777777775
No 27
>PRK08013 oxidoreductase; Provisional
Probab=99.69 E-value=5.1e-15 Score=152.77 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=145.4
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|++.|..|++.|.+++++. |++++.+++|.++..++++ +.|...+ |.+++||+||+|||++
T Consensus 105 ~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~---------------g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 105 GHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKD---------------GSMLTARLVVGADGAN 167 (400)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcC---------------CCEEEeeEEEEeCCCC
Confidence 58999999999999999986 8999999999999877644 3454442 4689999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCC-eEEEEEEEecC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR-QIALGLVVALN 164 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~-~vsVGlv~~~~ 164 (442)
|.+.+++ +++. ........++ . ..++.+....+.....+. ..|..+++|..++ ..++.+....+
T Consensus 168 S~vR~~~----~~~~-~~~~~~~~~~--~--~~v~~~~~~~~~~~~~~~------~~g~~~~~p~~~~~~~~~~~~~~~~ 232 (400)
T PRK08013 168 SWLRNKA----DIPL-TFWDYQHHAL--V--ATIRTEEPHDAVARQVFH------GDGILAFLPLSDPHLCSIVWSLSPE 232 (400)
T ss_pred cHHHHHc----CCCc-cccccCcEEE--E--EEEeccCCCCCEEEEEEc------CCCCEEEEECCCCCeEEEEEEcCHH
Confidence 9998865 6652 1111122222 1 122222212232222221 1244467788654 45666655432
Q ss_pred C-CC-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHH
Q 013495 165 Y-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKS 242 (442)
Q Consensus 165 ~-~~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~S 242 (442)
. .. ...+..++.+.+... +...+...+.... ....|... ...++++.++++|+||||+.++|+.|+|++.||.+
T Consensus 233 ~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~-~~~~~l~~-~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~D 308 (400)
T PRK08013 233 EAQRMQQAPEEEFNRALAIA--FDNRLGLCELESE-RQVFPLTG-RYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMD 308 (400)
T ss_pred HHHHHHcCCHHHHHHHHHHH--HhHhhCceEecCC-ccEEecce-eecccccCCcEEEEechhhcCCccccCchhhhHHH
Confidence 1 10 011222222333211 0111111111110 00111111 12467888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc----C--chHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 243 GMLAAEAGFGVLHE----D--SNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 243 G~lAAeai~~al~~----~--~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
+...|+.+...+.. . ..|++|++..+.. ...-+...+.+..+|.
T Consensus 309 a~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 309 AAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLFA 358 (400)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999998866532 1 2589999876543 3332333455555553
No 28
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.68 E-value=7.7e-15 Score=150.53 Aligned_cols=227 Identities=14% Similarity=0.057 Sum_probs=139.7
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|+++|..|++.|.+++++. |++++.+++|.++..++++ +.|.+.+ +.+++|++||+|||.+
T Consensus 106 g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~a~~vI~AdG~~ 168 (391)
T PRK08020 106 GYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLAD---------------GEEIQAKLVIGADGAN 168 (391)
T ss_pred EEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECC---------------CCEEEeCEEEEeCCCC
Confidence 58999999999999999887 9999999999999876543 4455543 3589999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+++.+ ++.. ........++-+ ....+. ...+..++.+.. .|...++|..++..+++.......
T Consensus 169 S~vR~~~----~~~~-~~~~y~~~~~~~--~~~~~~--~~~~~~~~~~~~------~g~~~~~p~~~~~~~~v~~~~~~~ 233 (391)
T PRK08020 169 SQVRQMA----GIGV-HGWQYRQSCMLI--SVKCEN--PPGDSTWQQFTP------SGPRAFLPLFDNWASLVWYDSPAR 233 (391)
T ss_pred chhHHHc----CCCc-cccCCCceEEEE--EEEecC--CCCCEEEEEEcC------CCCEEEeECCCCcEEEEEECCHHH
Confidence 9988854 5541 111111122211 122221 112333333321 133466788777777766433211
Q ss_pred CC--CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 166 HN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 166 ~~--~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
.. ...+..++.+.+.+. +...+. +.........|... ...++.+.+|++|+||||+.++|+.|+|++.||.++
T Consensus 234 ~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~pl~~-~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da 308 (391)
T PRK08020 234 IRQLQAMSMAQLQQEIAAH--FPARLG--AVTPVAAGAFPLTR-RHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDV 308 (391)
T ss_pred HHHHHCCCHHHHHHHHHHH--hhhhcc--ceEeccccEeecce-eehhhhccCcEEEEechhhccCCcccchhHHHHHHH
Confidence 00 011222222222211 011111 11111112223221 124577889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc------CchHHHHHHHHHHh
Q 013495 244 MLAAEAGFGVLHE------DSNMEIYWDTLQKS 270 (442)
Q Consensus 244 ~lAAeai~~al~~------~~~l~~Y~~~~~~~ 270 (442)
..+|+.+.++... ...|+.|++..+..
T Consensus 309 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 341 (391)
T PRK08020 309 DALLDVLVNARSYGEAWASEAVLKRYQRRRMAD 341 (391)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 9999999876532 25688998877653
No 29
>PRK06753 hypothetical protein; Provisional
Probab=99.67 E-value=7.4e-15 Score=149.64 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=151.0
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.++.++|..|++.|.+.++ .++|+.+++|+++..++ +. +.|.+.+ |.++++++||+|||.+
T Consensus 91 ~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~-v~v~~~~---------------g~~~~~~~vigadG~~ 151 (373)
T PRK06753 91 LNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET-DK-VTIHFAD---------------GESEAFDLCIGADGIH 151 (373)
T ss_pred ccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC-Cc-EEEEECC---------------CCEEecCEEEECCCcc
Confidence 3578999999999998875 36899999999998765 33 4565543 4678999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEE-EEEEEEEeeCCCCC-CCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEec
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKH-NPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVAL 163 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~-~g~ke~~~~~~~~~-~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~ 163 (442)
|.+++++ +... .+...+ ..+... ++.... .+....++++ ..|..|++|..++.+...+.+..
T Consensus 152 S~vR~~~----~~~~----~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~------~~g~~~~~p~~~~~~~~~~~~~~ 215 (373)
T PRK06753 152 SKVRQSV----NADS----KVRYQGYTCFRGL--IDDIDLKLPDCAKEYWG------TKGRFGIVPLLNNQAYWFITINA 215 (373)
T ss_pred hHHHHHh----CCCC----CceEcceEEEEEE--eccccccCccceEEEEc------CCCEEEEEEcCCCeEEEEEEecc
Confidence 9998865 3321 111111 112111 221111 1122333332 13566889998887777665543
Q ss_pred CCCCCC---CChHHHHHHHHh-CCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHH
Q 013495 164 NYHNPF---LNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTA 239 (442)
Q Consensus 164 ~~~~~~---~~~~~~~~~~~~-~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~A 239 (442)
+-..+. .+..+..+.|+. +|.++.+++...... ....+......+++.+.++++||||||+.+.|+.|+|++.|
T Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~a 293 (373)
T PRK06753 216 KERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETG--ILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQA 293 (373)
T ss_pred ccCCcccccccHHHHHHHHhcCChHHHHHHHhCCccc--ceeeccccccccccccCCCEEEEecccccCCCCcCccHHHH
Confidence 211111 122222233332 233333332211100 00011111122356678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCchHHHHHHHHHHhhhHHHHHHHHchhhhhhh
Q 013495 240 MKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 288 (442)
Q Consensus 240 m~SG~lAAeai~~al~~~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~~ 288 (442)
|.++..+++.+... ...+.|+.|++.++.. ..+-++.++.+..+++.
T Consensus 294 i~Da~~L~~~L~~~-~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~ 340 (373)
T PRK06753 294 MEDAIVLANCLNAY-DFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQI 340 (373)
T ss_pred HHHHHHHHHHhhhc-cHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHhc
Confidence 99999999988431 1156799999999886 47778888888777753
No 30
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.67 E-value=1.2e-14 Score=149.38 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=140.6
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+|+++|..|++.|.+++++.|++++.+++|+++..++++ +.|++.+ +.+++|++||+|||.+|
T Consensus 107 ~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~---------------g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 107 GWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDD---------------GRRLEAALAIAADGAAS 169 (392)
T ss_pred EEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECC---------------CCEEEeCEEEEecCCCc
Confidence 589999999999999999999999999999999877633 3466543 35799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceE-EEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC-
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN- 164 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~-~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~- 164 (442)
.+++.+ |+.. .. ..| ..++...++.+. ..++..+..++ ..|...++|.+++..++.+.+..+
T Consensus 170 ~vr~~~----g~~~--~~--~~~~~~~~~~~v~~~~--~~~~~~~~~~~------~~g~~~~lP~~~~~~~~~w~~~~~~ 233 (392)
T PRK08773 170 TLRELA----GLPV--SR--HDYAQRGVVAFVDTEH--PHQATAWQRFL------PTGPLALLPFADGRSSIVWTLPDAE 233 (392)
T ss_pred hHHHhh----cCCc--eE--EEeccEEEEEEEEccC--CCCCEEEEEeC------CCCcEEEEECCCCceEEEEECCHHH
Confidence 887754 6552 11 111 123222222211 12233332221 123346788887777777665432
Q ss_pred CCC-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 165 YHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
... ...+..+..+.+... +...+..-+..... ...|.. ....++++.++++|+||||+.+.|+.|+|++.||..+
T Consensus 234 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~l~-~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da 309 (392)
T PRK08773 234 AERVLALDEAAFSRELTQA--FAARLGEVRVASPR-TAFPLR-RQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDV 309 (392)
T ss_pred HHHHHcCCHHHHHHHHHHH--HhhhhcCeEecCCc-cEeech-hhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHH
Confidence 110 011222222222110 11111110111000 011211 1124577889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc------CchHHHHHHHHHHh
Q 013495 244 MLAAEAGFGVLHE------DSNMEIYWDTLQKS 270 (442)
Q Consensus 244 ~lAAeai~~al~~------~~~l~~Y~~~~~~~ 270 (442)
..+|+.+.+++.. ...|.+|++..+..
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 310 AALQQLVRQAHARRADWAAPHRLQRWARTRRSD 342 (392)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 9999999887643 25689999877654
No 31
>PRK08244 hypothetical protein; Provisional
Probab=99.67 E-value=4.3e-14 Score=149.79 Aligned_cols=229 Identities=13% Similarity=0.067 Sum_probs=141.4
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.+.+.|..|++.|.+.+++.|++|+.+++++++..++++ +.|.+.+ .+| ..+++|++||+|||++|
T Consensus 94 ~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~----~~g--------~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 94 TLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--VEVVVRG----PDG--------LRTLTSSYVVGADGAGS 159 (493)
T ss_pred EEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--EEEEEEe----CCc--------cEEEEeCEEEECCCCCh
Confidence 367999999999999999999999999999999887654 2343331 122 25799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
.+.+++ |+.- ....... .++.....++.. .+.....+++ ..|..|++|.+++..++.+.......
T Consensus 160 ~vR~~l----gi~~-~g~~~~~--~~~~~~~~~~~~--~~~~~~~~~~------~~g~~~~~P~~~~~~~~~~~~~~~~~ 224 (493)
T PRK08244 160 IVRKQA----GIAF-PGTDATF--TAMLGDVVLKDP--PPSSVLSLCT------REGGVMIVPLSGGIYRVLIIDPERPQ 224 (493)
T ss_pred HHHHhc----CCCc-cCCCcce--EEEEEEEEecCC--CCcceeEEEe------CCceEEEEECCCCeEEEEEEcCCccc
Confidence 988754 6541 1111111 122111222211 1222232322 23566899998888887654322111
Q ss_pred ---CCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 167 ---NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 167 ---~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
....+..+..+.+.... ...+...+.. +-.. .+.. ....+++..++++|+||||+.++|+.|+|+++||.++
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~-~~~~-~~~~-~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA 299 (493)
T PRK08244 225 VPKDEPVTLEELKTSLIRIC--GTDFGLNDPV-WMSR-FGNA-TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDA 299 (493)
T ss_pred ccCCCCCCHHHHHHHHHHhh--CCCCCcCCee-EEEe-cccc-eeeHhhhccCcEEEeecceeccCCccccccccchhhH
Confidence 11123344444443211 0111100111 1000 0100 0113456678999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc---CchHHHHHHHHHH
Q 013495 244 MLAAEAGFGVLHE---DSNMEIYWDTLQK 269 (442)
Q Consensus 244 ~lAAeai~~al~~---~~~l~~Y~~~~~~ 269 (442)
..+|..+...+++ ...|+.|++..+.
T Consensus 300 ~~La~~La~~l~g~~~~~lL~~Ye~eR~~ 328 (493)
T PRK08244 300 MNLGWKLAAAIKGWAPDWLLDSYHAERHP 328 (493)
T ss_pred HHHHHHHHHHHcCCCCchhhhhhHHHHHH
Confidence 9999999888765 4668999986654
No 32
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.66 E-value=2.8e-14 Score=146.86 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=142.1
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+++.|..+.+.|+++|++.|++++.+++|+++...+ +..+.|+.. .+|+ ..+++||+||+|||++|.
T Consensus 98 ~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~-~~~~~V~~~-----~~G~-------~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 98 TVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFD-SDRPYVTYE-----KDGE-------EHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred EEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecC-CCceEEEEE-----cCCe-------EEEEEeCEEEECCCCCCc
Confidence 456789999999999999999999999999987622 223445542 1232 257999999999999999
Q ss_pred ccHHHHHhcCCcccccCCC-ceEEEEEEEEE-eeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 88 LSEKLIKNFKLREKSHAQH-QTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~-~~~~~g~ke~~-~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
+.+++ +... .... ..+..+..... +.++. ..... +... ..+..|+++.+++...+.+.+...-
T Consensus 165 vR~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (392)
T PRK08243 165 SRASI----PAGA--LRTFERVYPFGWLGILAEAPPV---SDELI-YANH-----ERGFALCSMRSPTRSRYYLQCPLDD 229 (392)
T ss_pred hhhhc----Ccch--hhceecccCceEEEEeCCCCCC---CCceE-EeeC-----CCceEEEecCCCCcEEEEEEecCCC
Confidence 98865 4331 1111 11112211111 12211 11121 1111 1244455555555455554443221
Q ss_pred CCCCCChHHHHHHHHh-CCC-cccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 166 HNPFLNPYEEFQKFKH-HPA-IKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~P~-i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
..+..+..+..+.+.. .+. ....+..+...... ..+...+ ..++++.++++||||||+.++|+.|+|++.||.++
T Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da 306 (392)
T PRK08243 230 KVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKS--IAPLRSF-VAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDV 306 (392)
T ss_pred CcccCChhHHHHHHHHhcCcccccccccCcccccc--ceeeeec-eeccceeCCEEEEecccccCCCCcCcchhHHHHHH
Confidence 1111122222233321 111 11111111111111 1111111 12456678999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc--CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 244 MLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 244 ~lAAeai~~al~~--~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
..+|+.+.+.++. ...|..|++..+.. ..+-.+.++.+...++
T Consensus 307 ~~La~~L~~~~~~~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 307 RYLARALVEFYREGDTALLDAYSATALRR-VWKAERFSWWMTSMLH 351 (392)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 9999999887654 46799999998865 3454555555555554
No 33
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.66 E-value=8.2e-15 Score=149.99 Aligned_cols=243 Identities=14% Similarity=0.075 Sum_probs=149.2
Q ss_pred CEEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.|.++|..|++.|.++|++.| ++++ +++|+++..++++ +.|.+.+ +.+++|++||+|||.+
T Consensus 105 ~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~---------------g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 105 AWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLAD---------------GQVLRADLVVGADGAH 166 (388)
T ss_pred EEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECC---------------CCEEEeeEEEEeCCCC
Confidence 578999999999999999998 9999 9999999876543 4566653 3579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+.+.+ ++.. ...+. ...++...++.+.. .....+++++ ..|..|++|.+++.+.+.+....+.
T Consensus 167 S~vr~~~----~~~~--~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~ 231 (388)
T PRK07608 167 SWVRSQA----GIKA--ERRPY-RQTGVVANFKAERP--HRGTAYQWFR------DDGILALLPLPDGHVSMVWSARTAH 231 (388)
T ss_pred chHHHhc----CCCc--ccccc-CCEEEEEEEEecCC--CCCEEEEEec------CCCCEEEeECCCCCeEEEEECCHHH
Confidence 9987754 6542 11111 11233222333221 1222333332 2355678899888887766543211
Q ss_pred C-C-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 166 H-N-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 166 ~-~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
. . ...++.++.+.+... +...+..-+.+.. ...+|..- ..+++.+.++++||||||+.++|+.|+|++.||.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da 307 (388)
T PRK07608 232 ADELLALSPEALAARVERA--SGGRLGRLECVTP-AAGFPLRL-QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDV 307 (388)
T ss_pred HHHHHCCCHHHHHHHHHHH--HHHhcCCceecCC-cceeecch-hhhhhhhcCceEEEeccccccCCccccccchhHHHH
Confidence 1 1 012333333333211 0001111111100 01122211 224577889999999999999999999999999999
Q ss_pred HHHHHHHHhhhc--c---CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 244 MLAAEAGFGVLH--E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 244 ~lAAeai~~al~--~---~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
..+|+.+..... . ...|++|++..+... ..=.+.++.+..+|.
T Consensus 308 ~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~-~~~~~~~~~~~~~~~ 355 (388)
T PRK07608 308 AALADVLAGREPFRDLGDLRLLRRYERARREDI-LALQVATDGLQRLFA 355 (388)
T ss_pred HHHHHHHHHhhccCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999976542 1 256899999887642 222344555555553
No 34
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.66 E-value=2.3e-14 Score=148.13 Aligned_cols=247 Identities=11% Similarity=0.065 Sum_probs=143.2
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|++.+..|.+.|.+++++. |++++.+++|+++..++++ +.|.+.+ ++ ...+++||+||+|||.+
T Consensus 115 ~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~-----~~-------~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 115 GYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEI-----EG-------KQQTLQSKLVVAADGAR 180 (415)
T ss_pred EEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEcc-----CC-------cceEEeeeEEEEeCCCC
Confidence 46677778999999998886 7999999999999877644 3354432 11 12579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+.+++ ++.. ...... ...+......+ ........+.+ |+ .|..|+||.+++.+++.+....+.
T Consensus 181 S~vR~~~----~~~~-~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~-~~-----~g~~~~~p~~~~~~~~~~~~~~~~ 245 (415)
T PRK07364 181 SPIRQAA----GIKT-KGWKYW--QSCVTATVKHE--APHNDIAYERF-WP-----SGPFAILPLPGNRCQIVWTAPHAQ 245 (415)
T ss_pred chhHHHh----CCCc-eeecCC--CEEEEEEEEcc--CCCCCEEEEEe-cC-----CCCeEEeECCCCCEEEEEECCHHH
Confidence 9998754 5541 011111 11122122221 11122222221 21 245688999888888765432210
Q ss_pred -CC-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 166 -HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 166 -~~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
.. ...+..+..+.+.+. +...+..-+.++. ....|.-. ...++++.++++||||||+.++|+.|+|+..||.++
T Consensus 246 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA 321 (415)
T PRK07364 246 AKALLALPEAEFLAELQQR--YGDQLGKLELLGD-RFLFPVQL-MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDA 321 (415)
T ss_pred HHHHHCCCHHHHHHHHHHH--hhhhhcCceecCC-Cceecchh-hhhhhhcCCcEEEEecccccCCCcccccHhHHHHHH
Confidence 00 011222222333211 0111111011110 01112111 123567889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 244 MLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 244 ~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
..+|+.+...+.. ...|+.|++..+.. ...=++..+.+..+|.
T Consensus 322 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 322 AALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTDLLDRLFS 370 (415)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999876531 25799999966543 2222344455555554
No 35
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.65 E-value=2.6e-14 Score=147.51 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=145.1
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+|+++|..|.+.|.+++++.|++|+.+++|.++..++++ +.|.+.+ |.+++|++||+|||.+|
T Consensus 106 g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~---------------g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 106 GHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLAD---------------GRQLRAPLVVAADGANS 168 (405)
T ss_pred EEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECC---------------CCEEEeCEEEEecCCCc
Confidence 589999999999999999999999999999999877644 3455543 45799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCC----eEEEEEEEe
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR----QIALGLVVA 162 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~----~vsVGlv~~ 162 (442)
.+.+++ +... .........+ +. ....+. ......+..++ ..|..++||.+++ ..++.....
T Consensus 169 ~vR~~l----g~~~-~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~------~~g~~~~~P~~~~~~~~~~~~~~~~~ 233 (405)
T PRK05714 169 AVRRLA----GCAT-REWDYLHHAI-VT-SVRCSE--PHRATAWQRFT------DDGPLAFLPLERDGDEHWCSIVWSTT 233 (405)
T ss_pred hhHHhc----CCCc-ccccCCceEE-EE-EEEcCC--CCCCEEEEEcC------CCCCeEEeeCCCCCCCCeEEEEEECC
Confidence 988754 5542 1111111111 11 122221 11222222221 1244467787532 244444433
Q ss_pred cCCCCC--CCChHHHHHHHHhC--CCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHH
Q 013495 163 LNYHNP--FLNPYEEFQKFKHH--PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHT 238 (442)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~~~~--P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~ 238 (442)
.+.... ..+..++.+.+.+. +.+.+++.......| |... ...++++.++++|+||||+.+.|+.|+|++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~l~~-~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~ 307 (405)
T PRK05714 234 PEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCV-----PLRQ-RHAKRYVEPGLALIGDAAHTIHPLAGQGVNL 307 (405)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEE-----ecce-eehhhhccCCEEEEEeccccCCCcccccccH
Confidence 211100 11222222222110 112222221121112 2111 1245778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 239 AMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 239 Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
||.++..+|+.+.+++.. ...|..|++..+.. ..+=....+.+..+|+
T Consensus 308 al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 361 (405)
T PRK05714 308 GFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAMEGFERLFQ 361 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 999999999999765521 25789999887664 3443445555666664
No 36
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.65 E-value=5.7e-14 Score=146.76 Aligned_cols=250 Identities=16% Similarity=0.110 Sum_probs=150.0
Q ss_pred CEEEehHHHHHHHHHHHHHCC---cEEecCCeEeEEEEc-----CCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEE
Q 013495 7 GNRKSLSQLVRWLGGKAEELG---VEIYPGFAASEILYD-----ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRIT 78 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~G---vei~~g~~v~~i~~~-----~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~v 78 (442)
+|+++|..|.+.|.+++++.+ ++++.+++|.++..+ +++..+.|++.+ |.+++|++|
T Consensus 111 ~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~---------------g~~i~a~ll 175 (437)
T TIGR01989 111 ACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSD---------------GQVLYTKLL 175 (437)
T ss_pred EEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcC---------------CCEEEeeEE
Confidence 589999999999999999876 999999999999763 223335566543 468999999
Q ss_pred EeccCCCCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEE
Q 013495 79 LLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALG 158 (442)
Q Consensus 79 I~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVG 158 (442)
|+|||++|.+.+++ |++. ......+.++ -..+..+... .++..+..+. + .|--.++|.+++..++.
T Consensus 176 VgADG~~S~vR~~~----gi~~-~g~~y~q~~~--v~~v~~~~~~-~~~~~~~~f~-~-----~g~~~~lPl~~~~~~~~ 241 (437)
T TIGR01989 176 IGADGSNSNVRKAA----NIDT-TGWNYNQHAV--VATLKLEEAT-ENDVAWQRFL-P-----TGPIALLPLPDNNSTLV 241 (437)
T ss_pred EEecCCCChhHHHc----CCCc-cceeeccEEE--EEEEEcccCC-CCCeEEEEEC-C-----CCCEEEeECCCCCEEEE
Confidence 99999999998854 6652 1111112222 1112222111 2233333331 1 23345678888888877
Q ss_pred EEEecCCCC--CCCChHHHHHHHHh--------CCC-------cccccC--C----C------------eEEeecceeec
Q 013495 159 LVVALNYHN--PFLNPYEEFQKFKH--------HPA-------IKPLLE--G----G------------TVVQYGARTLN 203 (442)
Q Consensus 159 lv~~~~~~~--~~~~~~~~~~~~~~--------~P~-------i~~~l~--~----~------------~~~~~ga~~i~ 203 (442)
+........ ..+++.++.+.+.. .|. ++++++ + + +.........|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (437)
T TIGR01989 242 WSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFP 321 (437)
T ss_pred EeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhheeecccceeEE
Confidence 665432110 11233332232210 011 000000 0 0 00000001122
Q ss_pred cCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHH
Q 013495 204 EGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQ 277 (442)
Q Consensus 204 ~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~ 277 (442)
. .....++++.++++|+||||+.++|+.|+|++.||..+..+|+.+.+++.. ...|+.|++..+.. ...=+.
T Consensus 322 ~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~ 399 (437)
T TIGR01989 322 L-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLG 399 (437)
T ss_pred e-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHH
Confidence 2 222345778899999999999999999999999999999999999887653 24689999887654 233244
Q ss_pred HHHchhhhhh
Q 013495 278 RARNYRPAFE 287 (442)
Q Consensus 278 ~~r~~~~~~~ 287 (442)
..+.+..+|.
T Consensus 400 ~t~~l~~l~~ 409 (437)
T TIGR01989 400 LVDKLHKLYA 409 (437)
T ss_pred HHHHHHHHHc
Confidence 4555555554
No 37
>PRK07588 hypothetical protein; Provisional
Probab=99.64 E-value=7.4e-14 Score=143.46 Aligned_cols=242 Identities=14% Similarity=0.071 Sum_probs=141.1
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+.|..|++.|.+++ ..|++|+.+++|+++..++++ +.|++.+ |.+++|++||+|||.+|.
T Consensus 98 ~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~---------------g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 98 TSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFER---------------GTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECC---------------CCEEEeCEEEECCCCCcc
Confidence 6899999999998865 458999999999999887643 3466553 457899999999999999
Q ss_pred ccHHHHHhcCCcccccCCCceEEEEEEE-EEeeCCCCCCCCcEE-EEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 88 LSEKLIKNFKLREKSHAQHQTYALGIKE-VWEIDEGKHNPGEIL-HTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~~~~~g~ke-~~~~~~~~~~~g~~~-~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
+.+.+ ++.. ..... ..+... ...++.....+.... ++.+ ..++..+||..++...+.+....+.
T Consensus 160 vR~~~---~~~~----~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~p~~~~~~~~~~~~~~~~ 225 (391)
T PRK07588 160 VRRLV---FGPE----RDFEH-YLGCKVAACVVDGYRPRDERTYVLYNE------VGRQVARVALRGDRTLFLFIFRAEH 225 (391)
T ss_pred chhhc---cCCc----cceEE-EcCcEEEEEEcCCCCCCCCceEEEEeC------CCCEEEEEecCCCCeEEEEEEEcCC
Confidence 97753 2222 11111 112110 111211111112222 2211 1123456787766665555554332
Q ss_pred CCCCCChHHHHH----HHHhC-CCccccc---CCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHH
Q 013495 166 HNPFLNPYEEFQ----KFKHH-PAIKPLL---EGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTH 237 (442)
Q Consensus 166 ~~~~~~~~~~~~----~~~~~-P~i~~~l---~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~ 237 (442)
..+..+.....+ .|... +....++ .....+.+. .+. ...+++.+.++++|+||||+.++|+.|+|+.
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n 300 (391)
T PRK07588 226 DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFD--VVS---QIRMDRWSRGRVALVGDAAACPSLLGGEGSG 300 (391)
T ss_pred ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhee--eee---eeccCccccCCEEEEEccccCCCCccCCcHH
Confidence 222222222222 22221 1111121 111111100 000 0123566789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 238 TAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 238 ~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
.||.++...|+.+...... ...|+.|++..+.. ...=....+.+...|+
T Consensus 301 ~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 301 LAITEAYVLAGELARAGGDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFA 350 (391)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHhhccccccccc
Confidence 9999999999988754322 46789999988775 3443445565666664
No 38
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.64 E-value=2.6e-14 Score=146.45 Aligned_cols=228 Identities=15% Similarity=0.065 Sum_probs=139.3
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+|.++|..|++.|.+++++.|...+.+++|.++..++++ +.|.+.+ +.+++||+||+|||.+|
T Consensus 105 g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 105 GYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDE--VTVTLAD---------------GTTLSARLVVGADGRNS 167 (388)
T ss_pred EEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe--EEEEECC---------------CCEEEEeEEEEecCCCc
Confidence 689999999999999999876444789999999877644 2355543 45899999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
.+.+++ ++.. ........++- ..++...........++. ..|..++||.+++..++.+....+..
T Consensus 168 ~vr~~~----g~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~------~~g~~~~~Pl~~~~~~~v~~~~~~~~ 232 (388)
T PRK07494 168 PVREAA----GIGV-RTWSYPQKALV----LNFTHSRPHQNVSTEFHT------EGGPFTQVPLPGRRSSLVWVVRPAEA 232 (388)
T ss_pred hhHHhc----CCCc-eecCCCCEEEE----EEEeccCCCCCEEEEEeC------CCCcEEEEECCCCcEEEEEECCHHHH
Confidence 987754 5542 11111222221 112111111222222221 12445778988777776655433210
Q ss_pred -C-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 167 -N-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 167 -~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
. ...++.+..+.+.. .+.+++...+... .....|..... .++++.++++|+||||+.++|+.|+|+..||.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~-~~~~~~l~~~~-~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~ 308 (388)
T PRK07494 233 ERLLALSDAALSAAIEE--RMQSMLGKLTLEP-GRQAWPLSGQV-AHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVA 308 (388)
T ss_pred HHHHcCCHHHHHHHHHH--HHhhhcCCeEEcc-CCcEeechHHH-HHhhccCceEEEEhhhhcCCchhhcccchhHHHHH
Confidence 0 11233333333322 1222222111111 01112221111 24677899999999999999999999999999999
Q ss_pred HHHHHHHhhhcc---CchHHHHHHHHHHh
Q 013495 245 LAAEAGFGVLHE---DSNMEIYWDTLQKS 270 (442)
Q Consensus 245 lAAeai~~al~~---~~~l~~Y~~~~~~~ 270 (442)
.+|+.+.+.... ...|+.|++..+..
T Consensus 309 ~La~~L~~~~~~~~~~~~L~~Y~~~R~~~ 337 (388)
T PRK07494 309 TLVEIVEDRPEDPGSAAVLAAYDRARRPD 337 (388)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 999999764332 36799999988764
No 39
>PRK06996 hypothetical protein; Provisional
Probab=99.62 E-value=1.4e-13 Score=142.05 Aligned_cols=246 Identities=16% Similarity=0.083 Sum_probs=138.7
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC-
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR- 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~- 85 (442)
+|+++|..|++.|.+++++.|++++.++++.++..++++ +.|...+ .+| +.+++|++||+|||.+
T Consensus 109 g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~----~~g--------~~~i~a~lvIgADG~~~ 174 (398)
T PRK06996 109 GYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGT----PQG--------ARTLRARIAVQAEGGLF 174 (398)
T ss_pred EEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECC----CCc--------ceEEeeeEEEECCCCCc
Confidence 689999999999999999999999999999999776544 3344332 112 2589999999999985
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCe---EEEEEEEe
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ---IALGLVVA 162 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~---vsVGlv~~ 162 (442)
|++.+. ++... ........+ +...+..+ ...++..+..+. + .|-.-++|.+++. .++.....
T Consensus 175 s~~r~~----~~~~~-~~~~~~~~~--~~~~v~~~--~~~~~~~~~~~~-~-----~G~~~~lp~~~~~~~~~~~v~~~~ 239 (398)
T PRK06996 175 HDQKAD----AGDSA-RRRDYGQTA--IVGTVTVS--APRPGWAWERFT-H-----EGPLALLPLGGPRQADYALVWCCA 239 (398)
T ss_pred hHHHHH----cCCCc-eeeecCCeE--EEEEEEcc--CCCCCEEEEEec-C-----CCCeEEeECCCCCCCcEEEEEECC
Confidence 444443 34431 111111111 11122222 112232222221 1 1222345665443 45444333
Q ss_pred cCCCC--CCCChHHHHHHHHhCCCcccccCCCeEEeecce-eeccCCCccCCccccCCEEEEccCCCcccCcccccHHHH
Q 013495 163 LNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGAR-TLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTA 239 (442)
Q Consensus 163 ~~~~~--~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~-~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~A 239 (442)
.+... ...+..+..+.+.+. +...+. ........ ..+.. ....++++.++++|+||||..++|+.|+|+..|
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~~~l~-~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~a 314 (398)
T PRK06996 240 PDEAARRAALPDDAFLAELGAA--FGTRMG--RFTRIAGRHAFPLG-LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLG 314 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH--hccccC--ceEEecceEEEeee-cccccceecCCEEEEEhhhccCCcccchhHHHH
Confidence 22110 112233333333321 111111 11111101 12222 222456788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 240 MKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 240 m~SG~lAAeai~~al~~~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
|.++..+|+.+...-.....|..|++..+.. ...=+...+.+.++|+
T Consensus 315 i~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~l~~~~~ 361 (398)
T PRK06996 315 LRDAHTLADALSDHGATPLALATFAARRALD-RRVTIGATDLLPRLFT 361 (398)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999865211146699999887543 2222344555555554
No 40
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.62 E-value=1e-13 Score=142.46 Aligned_cols=244 Identities=13% Similarity=0.081 Sum_probs=146.2
Q ss_pred EEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+++.|..|++.|.+++++.| ++++.+++|.++..++++ +.|.+.+ |.+++|++||+|||.+|
T Consensus 104 ~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~---------------g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 104 AVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQ---------------GNRWTGDALIGCDGVKS 166 (396)
T ss_pred EEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcC---------------CCEEecCEEEECCCcCh
Confidence 57999999999999998875 999999999999876533 3355543 45799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCC--CCCCCCcEEEEecCCCCCCCCceEEEEEcCCCe-EEEEEEEec
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE--GKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVAL 163 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~--~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~-vsVGlv~~~ 163 (442)
.+.+++ ++.. .....+ ..+...+..+. +.........+.| ..+..|+||..++. +++.+....
T Consensus 167 ~~r~~~---~g~~--~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~p~~~g~~~~~~~~~~~ 232 (396)
T PRK08163 167 VVRQSL---VGDA--PRVTGH---VVYRAVIDVDDMPEDLRINAPVLWAG------PHCHLVHYPLRGGEQYNLVVTFHS 232 (396)
T ss_pred HHHhhc---cCCC--CCcccc---EEEEEEEeHHHCcchhccCccEEEEc------CCceEEEEEecCCeEEEEEEEECC
Confidence 997754 2322 111111 11221222111 1111111222222 12455778886543 444433322
Q ss_pred CCC----CCCCChHHHHHHHH-hCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHH
Q 013495 164 NYH----NPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHT 238 (442)
Q Consensus 164 ~~~----~~~~~~~~~~~~~~-~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~ 238 (442)
+.. ....+..+..+.|. -+|.+..+++....... ..+. ....+++.+.++++||||||+.+.|+.|+|+..
T Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 308 (396)
T PRK08163 233 REQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WATA--DREPVAKWSTGRVTLLGDAAHPMTQYMAQGACM 308 (396)
T ss_pred CCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--cccc--CCCcccccccCcEEEEecccccCCcchhccHHH
Confidence 211 11123344455554 24655555543222111 0111 111234667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 239 AMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 239 Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
||.++..+|+++...-.. ...|..|++..+.. ..+=...++.+...++
T Consensus 309 ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 309 ALEDAVTLGKALEGCDGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 999999999988643212 46789999888764 2333444555555554
No 41
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.62 E-value=2e-13 Score=140.43 Aligned_cols=246 Identities=17% Similarity=0.078 Sum_probs=152.2
Q ss_pred CCEEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.++++.|.+|-+.|.+++++.+ ++++.++.|..+..+++ .|. |+... | |.+++|++||+|||.
T Consensus 97 ~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~-----d---------G~~~~a~llVgADG~ 160 (387)
T COG0654 97 LGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSF-----D---------GETLDADLLVGADGA 160 (387)
T ss_pred ceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcC-----C---------CcEEecCEEEECCCC
Confidence 4689999999999999999987 99999999999998873 444 66551 2 458999999999999
Q ss_pred CCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 85 RGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 85 ~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
+|.+.+++ +.............+.+ .... +...++..+..+. + .|.-=++|.+++..++-+.....
T Consensus 161 ~S~vR~~~----~~~~~~~~~y~~~~l~~--~~~~--~~~~~~~~~~~~~-~-----~~~~~~~p~~~~~~~~~~~~~~~ 226 (387)
T COG0654 161 NSAVRRAA----GIAEFSGRDYGQTALVA--NVEP--EEPHEGRAGERFT-H-----AGPFALLPLPDNRSSVVWSLPPG 226 (387)
T ss_pred chHHHHhc----CCCCccCCCCCceEEEE--Eeec--CCCCCCeEEEEec-C-----CCceEEEecCCCceeEEEECChh
Confidence 99998865 52210111122222221 1222 1112333333321 1 12223678876666666655443
Q ss_pred CC--CCCCChHHHHHHHH-hCCCcccccCCCeEEeec-ceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 165 YH--NPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYG-ARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 165 ~~--~~~~~~~~~~~~~~-~~P~i~~~l~~~~~~~~g-a~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
.. ....+..++++.+. ..|.... + +.....+ ....|..... ..++..++++|+||||..+.|+.|+|++.||
T Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~pl~~~~-a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl 302 (387)
T COG0654 227 PAEDLQGLSDEEFLRELQRRLGERDP-L--GRVTLVSSRSAFPLSLRV-AERYRRGRVVLIGDAAHAMHPLAGQGANLAL 302 (387)
T ss_pred hHHHHhcCCHHHHHHHHHHhcCcccc-c--ceEEEccccccccccchh-hhheecCcEEEEeeccccCCCccccchhhhh
Confidence 11 12233443333332 2222211 1 1111111 1122332222 3467779999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc---CchHHHHHHHHHHhhhHHHHHHHHchhhhh
Q 013495 241 KSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 286 (442)
Q Consensus 241 ~SG~lAAeai~~al~~---~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~ 286 (442)
..+...|+.+.++... ...|..|+++.+.. ..+=...++.+...|
T Consensus 303 ~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~ 350 (387)
T COG0654 303 EDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLF 350 (387)
T ss_pred hhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhh
Confidence 9999999999998874 46789999888654 333334444444444
No 42
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.62 E-value=6.7e-14 Score=144.57 Aligned_cols=243 Identities=11% Similarity=0.055 Sum_probs=145.1
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|++.+..|++.|.+++++. |++++.+++|+++..++++ +.|.+.+ |.+++|++||+|||.+
T Consensus 105 g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 105 GHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDN---------------GQALTAKLVVGADGAN 167 (405)
T ss_pred EEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECC---------------CCEEEeCEEEEeCCCC
Confidence 68899999999999999875 7999999999999877643 4566543 4589999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceE-EEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCC-CeEEEEEEEec
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMND-RQIALGLVVAL 163 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~-~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~-~~vsVGlv~~~ 163 (442)
|.+++++ ++.. . ...| ..++...+..+. ...+....+++. .|...++|..+ +..++......
T Consensus 168 S~vR~~~----~~~~--~--~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~------~g~~~~lp~~~~~~~~~~w~~~~ 231 (405)
T PRK08850 168 SWLRRQM----DIPL--T--HWDYGHSALVANVRTVD--PHNSVARQIFTP------QGPLAFLPMSEPNMSSIVWSTEP 231 (405)
T ss_pred ChhHHHc----CCCe--e--EEeeccEEEEEEEEccC--CCCCEEEEEEcC------CCceEEEECCCCCeEEEEEECCH
Confidence 9998865 6542 1 1111 122222222221 122333334321 13235678764 45677665533
Q ss_pred CCCC--CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHH
Q 013495 164 NYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMK 241 (442)
Q Consensus 164 ~~~~--~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~ 241 (442)
+... ...+..++.+.+.+. +...+..-+..+. ....|.. ....++++.++++|+||||+.+.|+.|+|+..||.
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~-~~~~pl~-~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~ 307 (405)
T PRK08850 232 LRAEALLAMSDEQFNKALTAE--FDNRLGLCEVVGE-RQAFPLK-MRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLL 307 (405)
T ss_pred HHHHHHHcCCHHHHHHHHHHH--HhhhhCcEEEccc-ccEEecc-eeeccccccCcEEEEEhhhhcCCccccccHHHHHH
Confidence 2111 111222222222211 0000100011110 0011111 11235778899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc------CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 242 SGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 242 SG~lAAeai~~al~~------~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
++...|+.+...+.. ...|+.|++..+.. ..+=+...+.+.++|.
T Consensus 308 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~~ 358 (405)
T PRK08850 308 DAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLFS 358 (405)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHC
Confidence 999999999876632 25689999766543 2333344455555554
No 43
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.57 E-value=5.4e-13 Score=143.02 Aligned_cols=245 Identities=12% Similarity=0.081 Sum_probs=143.7
Q ss_pred EEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+.+.|..+.+.|.+.+++. |++|+.+++|+++..++++ +.|++.+ .+|+ ..+++|++||+|||++|
T Consensus 108 ~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~----~~G~-------~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 108 NAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTD----ADGQ-------RETVRARYVVGCDGANS 174 (538)
T ss_pred ccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEc----CCCC-------EEEEEEEEEEecCCCch
Confidence 5688999999999999885 9999999999999988755 3344432 2332 25899999999999999
Q ss_pred cccHHHHHhcCCcccccCC-CceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 87 SLSEKLIKNFKLREKSHAQ-HQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~-~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
.+.+++ |+.. .... .+.+ +.+. ..+............++ .| .+...+++.+++...+.+.+..+-
T Consensus 175 ~vR~~l----g~~~-~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-~~-----~~~~~~~p~~~~~~r~~~~~~~~~ 240 (538)
T PRK06183 175 FVRRTL----GVPF-EDLTFPERW-LVVD--VLIANDPLGGPHTYQYC-DP-----ARPYTSVRLPHGRRRWEFMLLPGE 240 (538)
T ss_pred hHHHHc----CCee-eCCCccceE-EEEE--EecccCccCCCceEEEE-CC-----CCCEEEEEcCCCeEEEEEEeCCCC
Confidence 998865 5541 1111 1121 1111 11111111111122222 11 122345677666555544432221
Q ss_pred CCCCC-ChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 166 HNPFL-NPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 166 ~~~~~-~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
..... ++....+.+..... . ....+.+......+. ....+++..++++|+||||+.+.|+.|+|++.||..+.
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~~~~~~~~---~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~ 314 (538)
T PRK06183 241 TEEQLASPENVWRLLAPWGP-T--PDDAELIRHAVYTFH---ARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAA 314 (538)
T ss_pred ChhhcCCHHHHHHHHHhhCC-C--CcceEEEEEEeeeEc---cEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHH
Confidence 11111 22222222222110 0 011111111100110 01134667789999999999999999999999999999
Q ss_pred HHHHHHHhhhcc---CchHHHHHHHHHHhhhHHHHHHHHchhhhh
Q 013495 245 LAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 286 (442)
Q Consensus 245 lAAeai~~al~~---~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~ 286 (442)
.+|+.+...+.+ ...|..|++..+.. ..+-++.++.+..++
T Consensus 315 ~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~ 358 (538)
T PRK06183 315 NLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVI 358 (538)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhc
Confidence 999988766654 46799999998875 355566666665555
No 44
>PLN02985 squalene monooxygenase
Probab=99.57 E-value=1.1e-12 Score=139.83 Aligned_cols=227 Identities=15% Similarity=0.235 Sum_probs=136.0
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
++++.|.+|.+.|.++|++. ||+++.+ +|++++.++ +.++||+..+ .+|+ ..+++|++||+|||.+
T Consensus 141 g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~----~dG~-------~~~~~AdLVVgADG~~ 207 (514)
T PLN02985 141 ARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN----SAGE-------ETTALAPLTVVCDGCY 207 (514)
T ss_pred eeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc----CCCC-------EEEEECCEEEECCCCc
Confidence 47899999999999999886 6999876 677877665 6777887643 2342 2468899999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
|.+.+++ +... .....+..+.. . .+.....++....++|. .+...+|+.+++.+.+-+.+..+.
T Consensus 208 S~vR~~l----~~~~---~~~~s~~~~~~--~-~~~~~~~~~~~~~~~~~------~~~~l~ypi~~~~~~~~~~~~~~~ 271 (514)
T PLN02985 208 SNLRRSL----NDNN---AEVLSYQVGYI--S-KNCRLEEPEKLHLIMSK------PSFTMLYQISSTDVRCVFEVLPDN 271 (514)
T ss_pred hHHHHHh----ccCC---CcceeEeEEEE--E-ccccCCCCCcceEEcCC------CceEEEEEeCCCeEEEEEEEeCCC
Confidence 9998865 3331 11223444432 1 11111123322222332 244578888877776655554321
Q ss_pred CCCCCChHHHHHHH-Hh--CCC----ccccc----CCC-eEEeecceeeccCCCccCCccccCCEEEEccCCCcccCccc
Q 013495 166 HNPFLNPYEEFQKF-KH--HPA----IKPLL----EGG-TVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKI 233 (442)
Q Consensus 166 ~~~~~~~~~~~~~~-~~--~P~----i~~~l----~~~-~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g 233 (442)
.|..+.. .+..| ++ .|. +++.+ +.. +... .|..... ......+|++|+||||....|++|
T Consensus 272 -~~~~~~~-~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~-----~p~~~l~-~~~~~~~~vvLiGDAaH~~~P~~G 343 (514)
T PLN02985 272 -IPSIANG-EMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKV-----VPTKRMS-ATLSDKKGVIVLGDAFNMRHPAIA 343 (514)
T ss_pred -CCCcChh-hHHHHHHhccccccCHHHHHHHHhhcccccceee-----cCccccc-ccccCCCCEEEEecccccCCCCcc
Confidence 1211111 22222 11 121 22211 111 1111 1111110 113345799999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhh--hcc----CchHHHHHHHHHHh
Q 013495 234 KGTHTAMKSGMLAAEAGFGV--LHE----DSNMEIYWDTLQKS 270 (442)
Q Consensus 234 ~GI~~Am~SG~lAAeai~~a--l~~----~~~l~~Y~~~~~~~ 270 (442)
+|+..|+..+...|+.+.+. +.. .+.|++|++..+..
T Consensus 344 QGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r 386 (514)
T PLN02985 344 SGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM 386 (514)
T ss_pred ccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc
Confidence 99999999999999998642 111 35688898877653
No 45
>PRK05868 hypothetical protein; Validated
Probab=99.55 E-value=1.9e-12 Score=132.63 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=130.9
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.+.+.|..|.+.|.+ |...|++++.+++|+++..+++ .+.|...+ +.+++|++||+|||.+|
T Consensus 99 ~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~d---------------g~~~~adlvIgADG~~S 160 (372)
T PRK05868 99 DIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDDGD--SVRVTFER---------------AAAREFDLVIGADGLHS 160 (372)
T ss_pred eEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEecCC--eEEEEECC---------------CCeEEeCEEEECCCCCc
Confidence 467889999997754 5567999999999999976643 24566553 45799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEE-EEEEeeCCCCCCCCcEEE-EecCCCCCCCCceEEEEEcCCC-eEEEEEEEec
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGI-KEVWEIDEGKHNPGEILH-TLGWPLDQKTYGGSFLYHMNDR-QIALGLVVAL 163 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~-ke~~~~~~~~~~~g~~~~-~~G~pl~~~~~Gggwiy~~~~~-~vsVGlv~~~ 163 (442)
.+.+.+ ++-. . .....+|. ..++.++... ....... +.|. .....+|+..++ ..+..+....
T Consensus 161 ~vR~~~---~~~~---~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
T PRK05868 161 NVRRLV---FGPE---E--QFVKRLGTHAAIFTVPNFL-ELDYWQTWHYGD------STMAGVYSARNNTEARAALAFMD 225 (372)
T ss_pred hHHHHh---cCCc---c--cceeecceEEEEEEcCCCC-CCCcceEEEecC------CcEEEEEecCCCCceEEEEEEec
Confidence 998865 2322 1 11111221 1223333321 1121222 1221 112246776543 4444444332
Q ss_pred C-CCCC--CC-ChHHHH-HHHHhC----CCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccc
Q 013495 164 N-YHNP--FL-NPYEEF-QKFKHH----PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIK 234 (442)
Q Consensus 164 ~-~~~~--~~-~~~~~~-~~~~~~----P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~ 234 (442)
. ...+ .. ...+++ +.|... |.+.+.+......-+. .-.-..+++.+.++++|+||||+.+.|+.|+
T Consensus 226 ~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~-----~~~~~~~~~w~~grv~LvGDAAH~~~P~~Gq 300 (372)
T PRK05868 226 TELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFD-----EMSQILMDRWSRGRVALVGDAGYCCSPLSGQ 300 (372)
T ss_pred CCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeec-----cceEEecCCCCCCCeeeeecccccCCCccCc
Confidence 1 1000 00 112223 333321 2222222211111111 0000124577889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHH
Q 013495 235 GTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQK 269 (442)
Q Consensus 235 GI~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~ 269 (442)
|...||..+...|+.+...-.. ..+|+.|++.++.
T Consensus 301 Ga~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~ 336 (372)
T PRK05868 301 GTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHG 336 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhH
Confidence 9999999999999998653222 5679999999876
No 46
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.54 E-value=2.3e-12 Score=132.24 Aligned_cols=241 Identities=11% Similarity=0.066 Sum_probs=140.2
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+|++.+..|.+.|.+++++. |++++.+++|+++..++++ +.|.+.+ |.+++|++||+|||.+
T Consensus 104 g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~---------------g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 104 GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLES---------------GAEIEAKWVIGADGAN 166 (384)
T ss_pred EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECC---------------CCEEEeeEEEEecCCC
Confidence 58999999999999998764 7999999999999887654 3355543 4689999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC-
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN- 164 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~- 164 (442)
|.+.+++ ++.. ......++++-+ .+..+...++..+..+ +| .|-..++|+.++..++-+.....
T Consensus 167 S~vR~~~----gi~~-~~~~~~~~~~v~----~~~~~~~~~~~~~~~~-~~-----~g~~~~~pl~~~~~~~~~~~~~~~ 231 (384)
T PRK08849 167 SQVRQLA----GIGI-TAWDYRQHCMLI----NVETEQPQQDITWQQF-TP-----SGPRSFLPLCGNQGSLVWYDSPKR 231 (384)
T ss_pred chhHHhc----CCCc-eeccCCCeEEEE----EEEcCCCCCCEEEEEe-CC-----CCCEEEeEcCCCceEEEEECCHHH
Confidence 9998865 5541 112222222211 1111111222222222 11 12223467655544432322111
Q ss_pred CCC-CCCChHHHHHHHHh-CC-CcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHH
Q 013495 165 YHN-PFLNPYEEFQKFKH-HP-AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMK 241 (442)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~-~P-~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~ 241 (442)
..+ ...++.+..+.+.+ .| .+.++ +...+ ...|... ...++++.++++|+||||+.+.|+.|+|+..||.
T Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--~~~~l~~-~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~ 304 (384)
T PRK08849 232 IKQLSAMNPEQLRSEILRHFPAELGEI----KVLQH--GSFPLTR-RHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFK 304 (384)
T ss_pred HHHHHcCCHHHHHHHHHHHhhhhhCcE----Eeccc--eEeeccc-cccchhccCCEEEEEcccccCCCCccchHhHHHH
Confidence 000 11234444444432 12 11111 11111 1112211 1245778899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc-CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 242 SGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 242 SG~lAAeai~~al~~-~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
.+...++.+...-.. ...|..|++..+.. ...-....+.+..+|+
T Consensus 305 Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 350 (384)
T PRK08849 305 DVDVLLAETEKQGVLNDASFARYERRRRPD-NLLMQTGMDLFYKTFS 350 (384)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 999998887532111 46799999887653 2332333344445554
No 47
>PRK06847 hypothetical protein; Provisional
Probab=99.53 E-value=2.5e-12 Score=131.00 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=139.4
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
+.+.++|..|.+.|.+.+++.|++|+.+++|+++..++++ +.|.+.+ |.+++|++||+|||.+
T Consensus 100 ~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 100 GGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSD---------------GTTGRYDLVVGADGLY 162 (375)
T ss_pred CcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcC---------------CCEEEcCEEEECcCCC
Confidence 3467899999999999999999999999999999876533 4565543 4579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEE-EEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGI-KEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~-ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
|.+.+++ ++.. ..+...+... .. .++....... ...+.|. .+...+||..++.+.+-+ ....
T Consensus 163 s~~r~~l---~~~~----~~~~~~g~~~~~~--~~~~~~~~~~-~~~~~~~------~~~~~~~p~~~~~~~~~~-~~~~ 225 (375)
T PRK06847 163 SKVRSLV---FPDE----PEPEYTGQGVWRA--VLPRPAEVDR-SLMYLGP------TTKAGVVPLSEDLMYLFV-TEPR 225 (375)
T ss_pred cchhhHh---cCCC----CCceeccceEEEE--EecCCCCccc-eEEEeCC------CcEEEEEcCCCCeEEEEE-eccC
Confidence 9998764 2322 1122212211 11 1222111111 1222221 122345666655443322 2211
Q ss_pred CCCCCCChH---HHHHH-HHhC-C-Ccccc---cCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCccccc
Q 013495 165 YHNPFLNPY---EEFQK-FKHH-P-AIKPL---LEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKG 235 (442)
Q Consensus 165 ~~~~~~~~~---~~~~~-~~~~-P-~i~~~---l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~G 235 (442)
-..+..+.. +.++. +... + .+..+ +.....+.+ .+.......++.+.++++||||||+.+.|..|+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG 301 (375)
T PRK06847 226 PDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQG 301 (375)
T ss_pred cccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhccCCCCccCCeEEEEechhccCCCCcccc
Confidence 111122222 22222 2222 1 22222 111111111 1111111123466789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHhhhHHHHHHHHchhhhh
Q 013495 236 THTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAF 286 (442)
Q Consensus 236 I~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~ 286 (442)
++.||.++...|+.+.+.-.-.+.|+.|++..+.. ...-...++.+...+
T Consensus 302 ~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 302 AGMAIEDAIVLAEELARHDSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred HHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 99999999999998865321146789999888765 244345555555543
No 48
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.51 E-value=4e-12 Score=136.59 Aligned_cols=231 Identities=13% Similarity=0.091 Sum_probs=134.7
Q ss_pred EEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+.+.+..|+++|.+.+++. |++|+.+++|+++..++++..+.++.. +| ..+++|++||+|||.+|
T Consensus 120 ~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~------~g--------~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 120 INLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP------DG--------PYTLEADWVIACDGARS 185 (547)
T ss_pred EecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC------CC--------cEEEEeCEEEECCCCCc
Confidence 3478889999999999886 799999999999988765432223221 22 24799999999999999
Q ss_pred cccHHHHHhcCCcccccCC-CceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 87 SLSEKLIKNFKLREKSHAQ-HQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~-~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
.+.+.+ |+.. .... .+.+.+. . ..++.. . +.....+++.+.. ...+.|+++.+++...+.+....+.
T Consensus 186 ~vR~~l----g~~~-~g~~~~~~~~~~-d--~~~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (547)
T PRK08132 186 PLREML----GLEF-EGRTFEDRFLIA-D--VKMKAD-F-PTERWFWFDPPFH--PGQSVLLHRQPDNVWRIDFQLGWDA 253 (547)
T ss_pred HHHHHc----CCCC-CCccccceEEEE-E--EEecCC-C-CCeeeEEEeccCC--CCcEEEEEeCCCCeEEEEEecCCCC
Confidence 987754 6642 1111 1112111 1 112211 1 2222333332221 1234456666666666555332211
Q ss_pred -CCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 166 -HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 166 -~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
......+.+..+.+.+ .+... ..-+ +.+... .+. .....+++..++++|+||||+.+.|+.|+|++.||..+.
T Consensus 254 ~~~~~~~~~~~~~~l~~--~~~~~-~~~~-~~~~~~-~~~-~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~ 327 (547)
T PRK08132 254 DPEAEKKPENVIPRVRA--LLGED-VPFE-LEWVSV-YTF-QCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDAD 327 (547)
T ss_pred CchhhcCHHHHHHHHHH--HcCCC-CCee-EEEEEe-eee-eeeeecccccccEEEEecccccCCCcccccccchHHHHH
Confidence 1111222232222221 01100 0001 111100 000 011234667799999999999999999999999999999
Q ss_pred HHHHHHHhhhcc---CchHHHHHHHHHHh
Q 013495 245 LAAEAGFGVLHE---DSNMEIYWDTLQKS 270 (442)
Q Consensus 245 lAAeai~~al~~---~~~l~~Y~~~~~~~ 270 (442)
..|..+...+++ ...|+.|++..+..
T Consensus 328 ~LawkLa~vl~g~~~~~lL~~Ye~eR~p~ 356 (547)
T PRK08132 328 NLAWKLALVLRGRAPDSLLDSYASEREFA 356 (547)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 999888877765 46789999888763
No 49
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.51 E-value=2.7e-12 Score=132.18 Aligned_cols=245 Identities=14% Similarity=0.065 Sum_probs=133.0
Q ss_pred EehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 10 KSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 10 v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
..+..+.+.|.+++++.|++++.+.++..+...+ +..++|... .+|+ ..+++|++||+|||.+|.+.
T Consensus 100 ~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~-~~~~~V~~~-----~~g~-------~~~i~adlvIGADG~~S~VR 166 (390)
T TIGR02360 100 YGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLA-GDRPYVTFE-----RDGE-------RHRLDCDFIAGCDGFHGVSR 166 (390)
T ss_pred eCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecC-CCccEEEEE-----ECCe-------EEEEEeCEEEECCCCchhhH
Confidence 4578899999999999999999998887775422 222355543 1231 24799999999999999998
Q ss_pred HHHHHhcCCcccccCC-CceEEEEEEEEE-eeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEE-EEEEEecCCC
Q 013495 90 EKLIKNFKLREKSHAQ-HQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIA-LGLVVALNYH 166 (442)
Q Consensus 90 r~l~~~~gl~~~~~~~-~~~~~~g~ke~~-~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vs-VGlv~~~~~~ 166 (442)
+++ +... ... ...+..+...+. ..++ ..... ++.+. ..+. .+++..++..+ .-+....+-.
T Consensus 167 ~~l----~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~~~-~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~ 230 (390)
T TIGR02360 167 ASI----PAEV--LKEFERVYPFGWLGILSETPP---VSHEL-IYSNH-----ERGF-ALCSMRSATRSRYYVQVPLTDK 230 (390)
T ss_pred Hhc----Cccc--ceeeeccCCcceEEEecCCCC---CCCce-EEEeC-----CCce-EEEeccCCCcceEEEEcCCCCC
Confidence 864 3221 110 011112211111 1111 11111 22221 0111 23343221111 1111111100
Q ss_pred CCCCChHHHHHHHHh--CCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHH
Q 013495 167 NPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGM 244 (442)
Q Consensus 167 ~~~~~~~~~~~~~~~--~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~ 244 (442)
.+........+.++. .|.+.+.+..+..... ...|...+. .++++.++++||||||+.+.|+.|+|+..||.++.
T Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~-~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~ 307 (390)
T TIGR02360 231 VEDWSDDRFWAELKRRLPSEAAERLVTGPSIEK--SIAPLRSFV-CEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVH 307 (390)
T ss_pred hhhCChhHHHHHHHHhcCchhhhhhccCCccce--eeeeHHhhc-cccCccCCEEEEEccccCCCCCcCCchhHHHHHHH
Confidence 011111111222221 1222222221211110 111221121 34567899999999999999999999999999999
Q ss_pred HHHHHHHhhhcc--CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 245 LAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 245 lAAeai~~al~~--~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
.+|+.+.++... ..+|..|++..+.. +.+-.+.+|.+.++++
T Consensus 308 ~La~~L~~~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 308 YLYEALLEHYQEGSSAGIEGYSARALAR-VWKAERFSWWMTSLLH 351 (390)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999776543 46799999988765 3555666777766654
No 50
>PTZ00367 squalene epoxidase; Provisional
Probab=99.51 E-value=3.1e-12 Score=137.34 Aligned_cols=222 Identities=12% Similarity=0.137 Sum_probs=127.1
Q ss_pred CEEEehHHHHHHHHHHH---HHCCcEEecCCeEeEEEEcCCC---cEEEEEeCCcc----------ccCCCCCccCCCCc
Q 013495 7 GNRKSLSQLVRWLGGKA---EELGVEIYPGFAASEILYDADN---KVIGIGTNDMG----------IAKDGSKKENFQRG 70 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~A---e~~Gvei~~g~~v~~i~~~~~g---~v~gV~t~~~g----------~~~~G~~~~~~~~g 70 (442)
++.+.|..|++.|.+.| ...+|+++.+ +|++++.++++ ++.||+....+ .+.+.+.......+
T Consensus 125 g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g 203 (567)
T PTZ00367 125 GVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVR 203 (567)
T ss_pred eeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccc
Confidence 46678999999999987 4568999865 78888766532 47788764311 00000001111235
Q ss_pred eEEEEcEEEeccCCCCcccHHHHHhcCCcccccCCCceEEEEEEE-EEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEE
Q 013495 71 VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKE-VWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYH 149 (442)
Q Consensus 71 ~~i~Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke-~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~ 149 (442)
.+++|++||+|||.+|.+++++ +... ...+.+....|+.. ..+++. ++....++| ..|..|+||
T Consensus 204 ~~~~AdLvVgADG~~S~vR~~l----~~~~-~~~~~~s~~~g~~~~~~~lp~----~~~~~v~~g------~~gpi~~yP 268 (567)
T PTZ00367 204 KVATAPLVVMCDGGMSKFKSRY----QHYT-PASENHSHFVGLVLKNVRLPK----EQHGTVFLG------KTGPILSYR 268 (567)
T ss_pred eEEEeCEEEECCCcchHHHHHc----cCCC-CCcCcceEEEEEEEecccCCC----CCeeEEEEc------CCceEEEEE
Confidence 7899999999999999998875 4321 11222233334311 012221 222222233 125568999
Q ss_pred cCCCeEEEEEEEecCCCCCCC-ChHHHHHHHHhCCC----ccccc----CC-CeEEeecceeeccCCCccCCccccCCEE
Q 013495 150 MNDRQIALGLVVALNYHNPFL-NPYEEFQKFKHHPA----IKPLL----EG-GTVVQYGARTLNEGGLQSIPYPVFPGGA 219 (442)
Q Consensus 150 ~~~~~vsVGlv~~~~~~~~~~-~~~~~~~~~~~~P~----i~~~l----~~-~~~~~~ga~~i~~gg~~~~~~~~~~g~l 219 (442)
.+++.+.+.+.+... ..|.. ...+++... ..|. +++.+ .. +.... .|...+. ....+.+|++
T Consensus 269 l~~~~~r~lv~~~~~-~~p~~~~~~~~l~~~-~~p~l~~~l~~~f~~~l~~~~~l~~-----~p~~~~p-~~~~~~~gvv 340 (567)
T PTZ00367 269 LDDNELRVLVDYNKP-TLPSLEEQSEWLIED-VAPHLPENMRESFIRASKDTKRIRS-----MPNARYP-PAFPSIKGYV 340 (567)
T ss_pred cCCCeEEEEEEecCC-cCCChHHHHHHHHHh-hcccCcHHHHHHHHHhhcccCCeEE-----eeHhhCC-CccCCCCCEE
Confidence 998888877765322 11111 111222111 0111 11111 11 11111 1221111 1245678999
Q ss_pred EEccCCCcccCcccccHHHHHHHHHHHHHHHHh
Q 013495 220 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 252 (442)
Q Consensus 220 lvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~ 252 (442)
|+||||..+.|++|+|+..||..+...|+.+..
T Consensus 341 LIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 341 GIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred EEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999875
No 51
>PRK06184 hypothetical protein; Provisional
Probab=99.50 E-value=8.2e-12 Score=132.76 Aligned_cols=230 Identities=13% Similarity=0.055 Sum_probs=133.4
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.+++++..|++.|.+.+++.|++|+.+++|+++..++++ | .|.+.+ .+ .+.+++|++||+|||++|
T Consensus 103 ~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~----~~--------~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 103 PLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAG----PA--------GEETVRARYLVGADGGRS 168 (502)
T ss_pred ceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEe----CC--------CeEEEEeCEEEECCCCch
Confidence 478899999999999999999999999999999887754 3 233321 01 146899999999999999
Q ss_pred cccHHHHHhcCCcccccCC-Cc-eEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCC-eEEEEEEEec
Q 013495 87 SLSEKLIKNFKLREKSHAQ-HQ-TYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR-QIALGLVVAL 163 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~-~~-~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~-~vsVGlv~~~ 163 (442)
.+.+++ |+.- .... .+ .+.+. . ..++. ..+. ..+.+ ... ..+...++|..++ ...+.+....
T Consensus 169 ~vR~~l----gi~~-~g~~~~~~~~~~~-~--~~~~~--~~~~-~~~~~--~~~--~~~~~~~~p~~~~~~~~~~~~~~~ 233 (502)
T PRK06184 169 FVRKAL----GIGF-PGETLGIDRMLVA-D--VSLTG--LDRD-AWHQW--PDG--DMGMIALCPLPGTDLFQIQAPLPP 233 (502)
T ss_pred HHHHhC----CCCc-ccCcCCCceEEEE-E--EEeec--CCCc-ceEEc--cCC--CCcEEEEEEccCCCeEEEEEEcCC
Confidence 997765 5542 1111 11 21111 1 12221 1111 22222 101 1122235666533 4444433222
Q ss_pred CCCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 164 NYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
+ ..+..++.+..+.+........ +. -+.+.+... .+. .....+++..++++|+||||..+.|+.|+|++.||.++
T Consensus 234 ~-~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~~-~~~-~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA 308 (502)
T PRK06184 234 G-GEPDLSADGLTALLAERTGRTD-IR-LHSVTWASA-FRM-NARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDA 308 (502)
T ss_pred C-ccCCCCHHHHHHHHHHhcCCCC-cc-eeeeeeeec-ccc-ceeEhhhhcCCcEEEeccccccCCCcccccccchHHHH
Confidence 1 1122233333333332110011 10 011111100 000 01112456779999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc--CchHHHHHHHHHHh
Q 013495 244 MLAAEAGFGVLHE--DSNMEIYWDTLQKS 270 (442)
Q Consensus 244 ~lAAeai~~al~~--~~~l~~Y~~~~~~~ 270 (442)
...|..+...+++ ...|..|++..+..
T Consensus 309 ~~LawkLa~vl~g~~~~lL~~Ye~eR~p~ 337 (502)
T PRK06184 309 YNLGWKLAAVLAGAPEALLDTYEEERRPV 337 (502)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999888776654 45689999988764
No 52
>PRK06834 hypothetical protein; Provisional
Probab=99.47 E-value=2.7e-11 Score=128.37 Aligned_cols=222 Identities=15% Similarity=0.077 Sum_probs=131.7
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
++.+.+..|.+.|.+.+++.|++|+.+++|+++..++++ +.|++.+ +.+++|++||+|||++|
T Consensus 94 ~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~---------------g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 94 GLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSD---------------GRTLRAQYLVGCDGGRS 156 (488)
T ss_pred cccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECC---------------CCEEEeCEEEEecCCCC
Confidence 577889999999999999999999999999999987644 3455432 35799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcC-CCeEEEEEEEecCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMN-DRQIALGLVVALNY 165 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~-~~~vsVGlv~~~~~ 165 (442)
.+.+++ |+.- .........+ +- ...++.. ...+ .+. . ..|...+.+.. ++..++.+.....-
T Consensus 157 ~vR~~l----gi~~-~g~~~~~~~~-~~-dv~~~~~-~~~~--~~~--~-----~~g~~~~~~~~~~~~~~~~~~~~~~~ 219 (488)
T PRK06834 157 LVRKAA----GIDF-PGWDPTTSYL-IA-EVEMTEE-PEWG--VHR--D-----ALGIHAFGRLEDEGPVRVMVTEKQVG 219 (488)
T ss_pred CcHhhc----CCCC-CCCCcceEEE-EE-EEEecCC-CCcc--eee--C-----CCceEEEeccCCCCeEEEEEecCCCC
Confidence 987754 6542 1222222111 11 1122211 0000 110 0 12212233443 45555544322111
Q ss_pred CCCCCChHHHHHHHHh-CC-CcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 166 HNPFLNPYEEFQKFKH-HP-AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~P-~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
.....+..+..+.+.. .+ .+. .........|. .. ....+++..++++|+||||..+.|+.|+|++.+|..+
T Consensus 220 ~~~~~~~~~~~~~l~~~~g~~~~-~~~~~~~~~~~-----~~-~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA 292 (488)
T PRK06834 220 ATGEPTLDDLREALIAVYGTDYG-IHSPTWISRFT-----DM-ARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDA 292 (488)
T ss_pred CCCCCCHHHHHHHHHHhhCCCCc-cccceeEEecc-----cc-ceecccccCCcEEEEeeccccCCccccccccccHHHH
Confidence 1111233222233321 11 111 00000111111 10 1124577789999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc---CchHHHHHHHHHH
Q 013495 244 MLAAEAGFGVLHE---DSNMEIYWDTLQK 269 (442)
Q Consensus 244 ~lAAeai~~al~~---~~~l~~Y~~~~~~ 269 (442)
.-.|..+...+.+ ...|..|++..+.
T Consensus 293 ~nLawkLa~vl~g~~~~~lLd~Ye~eRrp 321 (488)
T PRK06834 293 VNLGWKLAQVVKGTSPESLLDTYHAERHP 321 (488)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9888777776654 4678999988875
No 53
>PRK07190 hypothetical protein; Provisional
Probab=99.46 E-value=2.6e-11 Score=128.52 Aligned_cols=221 Identities=14% Similarity=0.066 Sum_probs=134.4
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+.+..+++.|.+++++.|++|+.+++|+++..++++ | .|.+.+ +.+++|++||+|||.+|.
T Consensus 104 ~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~---------------g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 104 LMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSN---------------GERIQSRYVIGADGSRSF 166 (487)
T ss_pred EecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECC---------------CcEEEeCEEEECCCCCHH
Confidence 56889999999999999999999999999999988755 2 233332 358999999999999999
Q ss_pred ccHHHHHhcCCcccccCCCc-eEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCC
Q 013495 88 LSEKLIKNFKLREKSHAQHQ-TYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 166 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~-~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~ 166 (442)
+.+++ |+.- ....++ .+.+. ....+.+... .+.... +. . ..|..+++|.+++...+-+ ..+
T Consensus 167 vR~~l----gi~f-~g~~~~~~~~~~-d~~~~~~~~~-~~~~~~-~~-~-----~~g~~~~~p~~~~~~r~~~--~~~-- 228 (487)
T PRK07190 167 VRNHF----NVPF-EIIRPQIIWAVI-DGVIDTDFPK-VPEIIV-FQ-A-----ETSDVAWIPREGEIDRFYV--RMD-- 228 (487)
T ss_pred HHHHc----CCCc-cccccceeEEEE-EEEEccCCCC-CcceEE-EE-c-----CCCCEEEEECCCCEEEEEE--EcC--
Confidence 98865 6652 112222 22221 1111111010 011111 11 1 1244566787665433211 111
Q ss_pred CCCCChHHHHHHHHh--CCCcccccCCCeEEeecceeeccCCCccCCccc-cCCEEEEccCCCcccCcccccHHHHHHHH
Q 013495 167 NPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV-FPGGAIIGCAAGFLNVPKIKGTHTAMKSG 243 (442)
Q Consensus 167 ~~~~~~~~~~~~~~~--~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~-~~g~llvGDAAg~vdp~~g~GI~~Am~SG 243 (442)
.+..+..+..+.+.. .|.- +. -..+.+-.. .+... +..+++. .++++|+||||....|+.|+|++.+|..+
T Consensus 229 ~~~~t~~~~~~~l~~~~~~~~---~~-~~~~~w~s~-~~~~~-r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA 302 (487)
T PRK07190 229 TKDFTLEQAIAKINHAMQPHR---LG-FKEIVWFSQ-FSVKE-SVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADA 302 (487)
T ss_pred CCCCCHHHHHHHHHHhcCCCC---Cc-eEEEEEEEE-eeeCc-EehhhcCcCCcEEEEecccccCCCccccchhhhHHHH
Confidence 122333333333432 1210 11 111122111 11111 1234554 68999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc---CchHHHHHHHHHH
Q 013495 244 MLAAEAGFGVLHE---DSNMEIYWDTLQK 269 (442)
Q Consensus 244 ~lAAeai~~al~~---~~~l~~Y~~~~~~ 269 (442)
.-.|..+...+++ ...|..|++..+.
T Consensus 303 ~nL~wkLa~v~~g~a~~~lLdtY~~eR~p 331 (487)
T PRK07190 303 FNLIWKLNMVIHHGASPELLQSYEAERKP 331 (487)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999998877765 4668999988765
No 54
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.46 E-value=1.8e-11 Score=126.34 Aligned_cols=230 Identities=9% Similarity=0.005 Sum_probs=129.3
Q ss_pred EEEehHHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+.+.|.+|.+.|.+++++ .|++++.+++|+++..++++ +.|++.+ .+ .+.+++|++||+|||.+|
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~----~~--------~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIR----TN--------SVETVSAAYLIACDGVWS 167 (400)
T ss_pred eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEe----CC--------CCcEEecCEEEECCCccH
Confidence 368999999999999977 48999999999999876533 3344321 01 135799999999999999
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEe---eCCCC----CCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEE
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWE---IDEGK----HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGL 159 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~---~~~~~----~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGl 159 (442)
.+.+++ +... ...... ..+...+. ++... .+.+....++|. .+...+||..++....-+
T Consensus 168 ~vR~~~----~~~~--~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~p~~~~~~~~~~ 233 (400)
T PRK06475 168 MLRAKA----GFSK--ARFSGH--IAWRTTLAADALPASFLSAMPEHKAVSAWLGN------KAHFIAYPVKGGKFFNFV 233 (400)
T ss_pred hHHhhc----CCCC--CCcCCc--eEEEEEeehhhcchhhhhhcccCCceEEEEcC------CCEEEEEEccCCcEEEEE
Confidence 997764 3331 111111 11221221 11100 012222333331 244467888755332112
Q ss_pred EEecC-C-CCCC---CChHHHHHHHHh-CCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCccc
Q 013495 160 VVALN-Y-HNPF---LNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKI 233 (442)
Q Consensus 160 v~~~~-~-~~~~---~~~~~~~~~~~~-~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g 233 (442)
....+ . ...+ .+..+..+.|.. .|.+..+++...... ..|.......+..+.++++||||||+.+.|..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~G 309 (400)
T PRK06475 234 AITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFEMADAQFVGPDRTIFLGDASHAVTPFAA 309 (400)
T ss_pred EEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCcccCCCcceecCCEEEEecccccCCchhh
Confidence 11111 0 0001 112222233332 233344443221111 112211111122345899999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHh
Q 013495 234 KGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKS 270 (442)
Q Consensus 234 ~GI~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~~~ 270 (442)
+|...||..+...|+.+... .-..+|+.|++..+..
T Consensus 310 qG~n~aieDa~~La~~L~~~-~~~~aL~~Ye~~R~~r 345 (400)
T PRK06475 310 QGAAMAIEDAAALAEALDSD-DQSAGLKRFDSVRKER 345 (400)
T ss_pred hhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 99999999999999988421 0136789999887664
No 55
>PRK06126 hypothetical protein; Provisional
Probab=99.43 E-value=2.7e-11 Score=130.00 Aligned_cols=231 Identities=15% Similarity=0.088 Sum_probs=133.9
Q ss_pred CEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.+.++|..|++.|.+.|++. |++|+.+++|+++..++++ |. |.+.+. .+|+ ..+++|++||+|||++
T Consensus 120 ~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~~~~---~~g~-------~~~i~ad~vVgADG~~ 187 (545)
T PRK06126 120 PHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATVEDL---DGGE-------SLTIRADYLVGCDGAR 187 (545)
T ss_pred cccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEEEEC---CCCc-------EEEEEEEEEEecCCcc
Confidence 46789999999999999875 8999999999999887644 33 333220 1231 2579999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCC--CCC--CCCcEEEEecCCCCCCCCceEEEEEcCC-CeEEEEEE
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE--GKH--NPGEILHTLGWPLDQKTYGGSFLYHMND-RQIALGLV 160 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~--~~~--~~g~~~~~~G~pl~~~~~Gggwiy~~~~-~~vsVGlv 160 (442)
|.+.+++ |+.. .......+.+.+ .++.+. ... .+. ..+++-+| . ..+++++..+ +...+. .
T Consensus 188 S~VR~~l----gi~~-~g~~~~~~~~~~--~~~~~~l~~~~~~~~~-~~~~~~~p---~--~~~~~~~~~~~~~~~~~-~ 253 (545)
T PRK06126 188 SAVRRSL----GISY-EGTSGLQRDLSI--YIRAPGLAALVGHDPA-WMYWLFNP---D--RRGVLVAIDGRDEWLFH-Q 253 (545)
T ss_pred hHHHHhc----CCcc-ccCCCcceEEEE--EEEcCchHHHhcCCCc-eEEEEECC---C--ccEEEEEECCCCeEEEE-E
Confidence 9998765 5542 111111222222 223221 111 122 22332122 1 2235556543 233332 1
Q ss_pred EecCCCCCCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 161 VALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
...+......++.+..+.+.+. +..-+ .-+.+... ... ......+++..++++|+||||..+.|+.|+|++.||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~~~~--~w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gi 327 (545)
T PRK06126 254 LRGGEDEFTIDDVDARAFVRRG--VGEDI-DYEVLSVV--PWT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGI 327 (545)
T ss_pred ecCCCCCCCCCHHHHHHHHHHh--cCCCC-CeEEEeec--ccc-hhheehhhhccCCEEEechhhccCCCCcCcccchhH
Confidence 1111111122333333333221 00000 00111111 001 111124567789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc---CchHHHHHHHHHH
Q 013495 241 KSGMLAAEAGFGVLHE---DSNMEIYWDTLQK 269 (442)
Q Consensus 241 ~SG~lAAeai~~al~~---~~~l~~Y~~~~~~ 269 (442)
..+...|..+...+++ ...|..|++..+.
T Consensus 328 eDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p 359 (545)
T PRK06126 328 GDAVNLAWKLAAVLNGWAGPALLDSYEAERRP 359 (545)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhH
Confidence 9999999999877654 4678999988776
No 56
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.40 E-value=2.1e-11 Score=126.39 Aligned_cols=247 Identities=16% Similarity=0.111 Sum_probs=140.7
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
..+.|..|.+.|.+.+.. +.++.+++|+++..++++ +.|.+.+ +.+++|++||+|||.+|.
T Consensus 100 ~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~--~~v~~~~---------------g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 100 SSVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEE--VQVLFTD---------------GTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCc--EEEEEcC---------------CCEEEeeEEEECCCccHH
Confidence 368899999999987643 568889999999877644 3565543 457999999999999999
Q ss_pred ccHHHHHhcCCcccccCCCceE-EEEEEEEEeeCC---C----CCCC---CcEEEEecCCCCCCCCceEEEEEcCCCeE-
Q 013495 88 LSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDE---G----KHNP---GEILHTLGWPLDQKTYGGSFLYHMNDRQI- 155 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~~~-~~g~ke~~~~~~---~----~~~~---g~~~~~~G~pl~~~~~Gggwiy~~~~~~v- 155 (442)
+.+.+....+.. ...+... ...+..+...+. . ...+ .....++| ..+..++||..++..
T Consensus 161 vR~~l~~~~~~~---~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~g~~~ 231 (414)
T TIGR03219 161 LRDYVLQGQGQA---PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLG------LDGHILTFPVRQGRLI 231 (414)
T ss_pred HHHHhcCccCCC---CCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEc------CCCeEEEEECCCCcEE
Confidence 988763211111 1222211 122222221110 0 0000 11112222 124445778765543
Q ss_pred EEEEEEecC-C-----CC--C---CCChHHHHHHHHh-CCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEcc
Q 013495 156 ALGLVVALN-Y-----HN--P---FLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC 223 (442)
Q Consensus 156 sVGlv~~~~-~-----~~--~---~~~~~~~~~~~~~-~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGD 223 (442)
+........ . .. + .....+.++.|.. +|.+.++++...... ..+......+++.+.++++|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~w~~grv~LiGD 307 (414)
T TIGR03219 232 NVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPT----LWALHDLAELPGYVHGRVALIGD 307 (414)
T ss_pred EEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCC----ceeeeecccccceeeCcEEEEEc
Confidence 333222110 0 00 0 1122333444432 233444433211110 00111112245677899999999
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHHHHhhhcc----CchHHHHHHHHHHhhhHHHHHHHHchhhhhh
Q 013495 224 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 287 (442)
Q Consensus 224 AAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~----~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~~ 287 (442)
||..+.|..|+|...||..+...|+.+.....+ +.+|+.|++..+.. ..+=.+.++.+...++
T Consensus 308 AAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r-~~~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 308 AAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR-ACRVQRTSREAGELYE 374 (414)
T ss_pred ccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988765322 46789999988774 3443455665555543
No 57
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.37 E-value=3.2e-10 Score=123.77 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=142.6
Q ss_pred EEEehHHHHHHHHHHHHHCCc--EEecCCeEeEEEEcCCC-cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 8 NRKSLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADN-KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gv--ei~~g~~v~~i~~~~~g-~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.++++..+.+.|.+.+++.|+ ++..+++++++..++++ ..+.|.+.+..-+.+|+ ..+++||+||+|||+
T Consensus 136 ~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~-------~~tv~A~~lVGaDGa 208 (634)
T PRK08294 136 VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGE-------EETVRAKYVVGCDGA 208 (634)
T ss_pred EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCc-------eEEEEeCEEEECCCC
Confidence 578899999999999998875 78899999999876532 33445544210001221 268999999999999
Q ss_pred CCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCC-CCCCCCcEEEEecCCCCCCCCceEEEEEcCCC-eEEEEEEEe
Q 013495 85 RGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE-GKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR-QIALGLVVA 162 (442)
Q Consensus 85 ~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~-~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~-~vsVGlv~~ 162 (442)
+|.+.+++ |+.- .........++-.+..... ........++. ...|...++|.+++ .+++-+...
T Consensus 209 ~S~VR~~l----gi~~--~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~-------~~~g~~~~~P~~~g~~~r~~~~~~ 275 (634)
T PRK08294 209 RSRVRKAI----GREL--RGDSANHAWGVMDVLAVTDFPDIRLKCAIQS-------ASEGSILLIPREGGYLVRLYVDLG 275 (634)
T ss_pred chHHHHhc----CCCc--cCCcccceEEEEEEEEccCCCCcceEEEEec-------CCCceEEEEECCCCeEEEEEEecC
Confidence 99998865 5541 1111111223322211111 00001111221 02344456788766 355433221
Q ss_pred c-CC-C---CCCCChHHHHHHHHh--CCCcccccCCCeEEeecceeeccCCCccCCcc----------ccCCEEEEccCC
Q 013495 163 L-NY-H---NPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP----------VFPGGAIIGCAA 225 (442)
Q Consensus 163 ~-~~-~---~~~~~~~~~~~~~~~--~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~----------~~~g~llvGDAA 225 (442)
. +. . ....++.+..+.+.. .|..-.. +.+.+-. ..+.+. +..+++ ..++++|+||||
T Consensus 276 ~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~----~~v~w~s-~y~i~~-r~a~~f~~~~~~~~~~r~gRVfLaGDAA 349 (634)
T PRK08294 276 EVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV----KEVAWWS-VYEVGQ-RLTDRFDDVPAEEAGTRLPRVFIAGDAC 349 (634)
T ss_pred cCCCccccccccCCHHHHHHHHHHhcCCCCCce----eEEeEEe-cccccc-eehhhcccccccccccccCCEEEEecCc
Confidence 1 10 1 122344555555542 2321111 1122110 001100 001111 247999999999
Q ss_pred CcccCcccccHHHHHHHHHHHHHHHHhhhcc---CchHHHHHHHHHHhhhHHH-HHHHHchhhhhh
Q 013495 226 GFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQE-LQRARNYRPAFE 287 (442)
Q Consensus 226 g~vdp~~g~GI~~Am~SG~lAAeai~~al~~---~~~l~~Y~~~~~~~~~~~e-l~~~r~~~~~~~ 287 (442)
....|..|+|++.+|..+.-.|..+...+.+ ...|..|++..+.. .++ +...+.+...|.
T Consensus 350 H~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~--a~~li~~~~~~~~l~~ 413 (634)
T PRK08294 350 HTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI--AQELIDFDREWSTMMA 413 (634)
T ss_pred cCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 9999999999999999999888888777655 46799999888763 444 344455555553
No 58
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.35 E-value=2.6e-10 Score=116.95 Aligned_cols=202 Identities=15% Similarity=0.125 Sum_probs=125.3
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
..|+|.+|+++|.++++ .+.+++.+.+|.+|..+++ .+.|++.+ |.+++|++||+|+|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~~~v~~~~---------------g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD--GVLVVLAD---------------GRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc--eEEEEECC---------------CCEEEeeEEEECCCcccc
Confidence 48999999999999999 4456677889999987764 34566654 469999999999998766
Q ss_pred ccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCC--CCceEEEEEcCCCeEEEEEEEecCC
Q 013495 88 LSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK--TYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~--~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
.++.. + .+...|+. ++++...+++..... +-|-.+.. .+...|+.|++++.+-|....-.+
T Consensus 144 ~~~~~----~---------~Q~f~G~~--v~~~~~~f~~~~~~l-MD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~- 206 (374)
T PF05834_consen 144 KARPL----G---------LQHFYGWE--VETDEPVFDPDTATL-MDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP- 206 (374)
T ss_pred ccccc----c---------cceeEEEE--EeccCCCCCCCceEE-EEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC-
Confidence 43311 1 23456653 455544455554332 22222221 233334457778888887655332
Q ss_pred CCCCCChHH---HHHHHHhCCCcccccCCCeEEeecceeecc--CCCccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 166 HNPFLNPYE---EFQKFKHHPAIKPLLEGGTVVQYGARTLNE--GGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 166 ~~~~~~~~~---~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~--gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
++.++... .++++.++- -+...+.++.-...||. ++. ++...++++.+|+|||+++|.||.++..++
T Consensus 207 -~~~~~~~~~~~~l~~~l~~~----g~~~~~i~~~E~G~IPm~~~~~---~~~~~~~v~~iG~agG~v~PsTGYs~~~~~ 278 (374)
T PF05834_consen 207 -RPALPEEELKARLRRYLERL----GIDDYEILEEERGVIPMTTGGF---PPRFGQRVIRIGTAGGMVKPSTGYSFARIQ 278 (374)
T ss_pred -CCCCCHHHHHHHHHHHHHHc----CCCceeEEEeecceeecccCCC---ccccCCCeeeEEccccCCCCcccHHHHHHH
Confidence 22233222 233332221 12233444333345777 432 355677899999999999999998888888
Q ss_pred HHHHHHHHHHHh
Q 013495 241 KSGMLAAEAGFG 252 (442)
Q Consensus 241 ~SG~lAAeai~~ 252 (442)
+.+...|+++.+
T Consensus 279 ~~a~~ia~~l~~ 290 (374)
T PF05834_consen 279 RQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHhh
Confidence 777666666654
No 59
>PRK07236 hypothetical protein; Provisional
Probab=99.25 E-value=6.5e-10 Score=114.15 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=50.9
Q ss_pred CccccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHh
Q 013495 211 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKS 270 (442)
Q Consensus 211 ~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~~ 270 (442)
++...++++|+||||..+.|..|+|...||..+...|+.+...... ..+|+.|++..+..
T Consensus 300 ~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~~R~~r 360 (386)
T PRK07236 300 PRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEAERLAV 360 (386)
T ss_pred cccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhHH
Confidence 5667899999999999999999999999999999999998764322 46788898888764
No 60
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.18 E-value=5.1e-09 Score=113.88 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=123.6
Q ss_pred CEEEehHHHHHHHHHHHHHCCcE-EecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVE-IYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gve-i~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.++|+|..|++.|++. .|++ ++.+++|+++..++ +.| .|.+.+ +.+++|++||+|||.+
T Consensus 188 ~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~-d~V-tV~~~d---------------G~ti~aDlVVGADG~~ 247 (668)
T PLN02927 188 TRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG-DKV-TVVLEN---------------GQRYEGDLLVGADGIW 247 (668)
T ss_pred EEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC-CEE-EEEECC---------------CCEEEcCEEEECCCCC
Confidence 4689999999999654 4554 67889999998765 333 366553 4578999999999999
Q ss_pred CcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCC-CCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 86 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHN-PGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 86 s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~-~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
|.+.+.+ ++..+ .....+ ..+..+....+.... .+ ...+.|. ..+...++..++.+.+-......
T Consensus 248 S~vR~~l---~g~~~---~~~sG~-~~~rgi~~~~p~~~~~~~-~~~~~G~------~~~~v~~~v~~g~~~~~~f~~~p 313 (668)
T PLN02927 248 SKVRNNL---FGRSE---ATYSGY-TCYTGIADFIPADIESVG-YRVFLGH------KQYFVSSDVGGGKMQWYAFHEEP 313 (668)
T ss_pred cHHHHHh---cCCCC---Ccccce-EEEEEEcCCCcccccccc-eEEEEcC------CeEEEEEcCCCCeEEEEEEEECC
Confidence 9998865 44431 111111 111112222221111 11 1112221 11112234444433321111111
Q ss_pred CC--C-CCCChHHHHHHHHh-CCCcccccCCC---eEEeecceeeccCCCccCCccccCCEEEEccCCCcccCcccccHH
Q 013495 165 YH--N-PFLNPYEEFQKFKH-HPAIKPLLEGG---TVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTH 237 (442)
Q Consensus 165 ~~--~-~~~~~~~~~~~~~~-~P~i~~~l~~~---~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~ 237 (442)
.. . +.....+..+.|.. .|.+.++++.. ....+.... ....++.+.++++|+||||..+-|..|+|..
T Consensus 314 ~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd-----~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n 388 (668)
T PLN02927 314 AGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYD-----RSPGFTWGKGRVTLLGDSIHAMQPNMGQGGC 388 (668)
T ss_pred ccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEe-----ccCCCccccCcEEEEcCccCCCCCccccchH
Confidence 00 0 00111122233321 23333343311 111111111 1112356678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc----------CchHHHHHHHHHHh
Q 013495 238 TAMKSGMLAAEAGFGVLHE----------DSNMEIYWDTLQKS 270 (442)
Q Consensus 238 ~Am~SG~lAAeai~~al~~----------~~~l~~Y~~~~~~~ 270 (442)
.||..+...|+.+.+++.. ..+|+.|++..+..
T Consensus 389 ~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~r 431 (668)
T PLN02927 389 MAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLR 431 (668)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999998776421 25788999877654
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.11 E-value=2.5e-08 Score=102.22 Aligned_cols=195 Identities=18% Similarity=0.146 Sum_probs=114.8
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
..|.|.+|.+.|.++..+ + |+.+.+|.++ ++++ |++.+ |.+++|++||+|+|.+|.
T Consensus 84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~----v~l~d---------------g~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADG----VDLAP---------------GTRINARSVIDCRGFKPS 139 (370)
T ss_pred eEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCE----EEECC---------------CCEEEeeEEEECCCCCCC
Confidence 579999999999865532 3 7778899988 3323 33333 468999999999999865
Q ss_pred ccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEE-EecCCCCCCCCceEEEEE--cCCCeEEEEEEEecC
Q 013495 88 LSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILH-TLGWPLDQKTYGGSFLYH--MNDRQIALGLVVALN 164 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~-~~G~pl~~~~~Gggwiy~--~~~~~vsVGlv~~~~ 164 (442)
-... .-.+..+|+. |+.... ++++.... .+-++ ...|+.|+|. ++++.+=|....
T Consensus 140 ~~~~-------------~~~Q~f~G~~--~r~~~p-~~~~~~~lMD~~~~---q~~g~~F~Y~lP~~~~~~lvE~T~--- 197 (370)
T TIGR01789 140 AHLK-------------GGFQVFLGRE--MRLQEP-HGLENPIIMDATVD---QLAGYRFVYVLPLGSHDLLIEDTY--- 197 (370)
T ss_pred cccc-------------ceeeEEEEEE--EEEcCC-CCCCccEEEeeecc---CCCCceEEEECcCCCCeEEEEEEe---
Confidence 3221 1224456654 555544 66654332 12222 1346778884 557777664322
Q ss_pred CCC-CCCChHHHHHHHHhCCCcccccCCCeEEeecceeeccCC---CccCCccccCCEEEEccCCCcccCcccccHHHHH
Q 013495 165 YHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGG---LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAM 240 (442)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~~P~i~~~l~~~~~~~~ga~~i~~gg---~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am 240 (442)
+.. +.++...+-++++.... +.-+...+.+......+|... +.. +....++++++|||||++.|.+|+|+..|+
T Consensus 198 ~s~~~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~-~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~ 275 (370)
T TIGR01789 198 YADDPLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSA-YQDEVRIVAIAGLRAGLTHPTTGYSLPVAV 275 (370)
T ss_pred ccCCCCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCccc-ccccCCceeeeecccccccccccccHHHHH
Confidence 233 44554444333321100 011122333332223566521 211 112367799999999999999999999999
Q ss_pred HHHHHHHHHH
Q 013495 241 KSGMLAAEAG 250 (442)
Q Consensus 241 ~SG~lAAeai 250 (442)
+.+...|+.+
T Consensus 276 ~~a~~la~~~ 285 (370)
T TIGR01789 276 ENADALAAQP 285 (370)
T ss_pred HHHHHHHhcc
Confidence 8766666555
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=98.96 E-value=5.2e-08 Score=94.72 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=95.5
Q ss_pred EcEEEeccCCCCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCe
Q 013495 75 GRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ 154 (442)
Q Consensus 75 Ak~vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~ 154 (442)
|+.||.|||..|.+.|++ . . .......+.+|+.- .. .....++.-..++|.+ +--.+|+.+.+.
T Consensus 2 A~LtivaDG~~S~fRk~l----~-~--~~~~v~S~fvGl~l-~~--~~lp~~~~ghvil~~~------~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKEL----S-D--NKPQVRSYFVGLIL-KD--APLPKPNHGHVILGKP------GPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhh----c-C--CCCceeeeEEEEEE-cC--CCCCCCCceEEEEcCC------CcEEEEEcCCCc
Confidence 789999999999999876 3 2 12334456677631 11 1122244434444543 334899998888
Q ss_pred EEEEEEEecCCCCCCCC---hHHHHHHHHhCCCc--------ccccCCCeEEeecceeeccCCCccCCccccCCEEEEcc
Q 013495 155 IALGLVVALNYHNPFLN---PYEEFQKFKHHPAI--------KPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC 223 (442)
Q Consensus 155 vsVGlv~~~~~~~~~~~---~~~~~~~~~~~P~i--------~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGD 223 (442)
+.|-+-+..+ +-|..+ ..++++... .|.+ .+-++++ ..+..|..-+.. .....+|++++||
T Consensus 66 tR~Lvdvp~~-k~P~~~~g~l~~yl~~~v-~P~LP~~lr~~f~~al~~~-----rirsMPn~~lp~-~~~~~~G~vllGD 137 (276)
T PF08491_consen 66 TRVLVDVPGP-KLPSVSNGELKEYLREVV-APQLPEELRPSFEKALEDG-----RIRSMPNSFLPA-SPNWKPGVVLLGD 137 (276)
T ss_pred eEEEEEeCCC-ccCCccchHHHHHHHHHH-HhhchHHHHHHHHHHhccC-----CcceecccccCC-CCCCCCCEEEEeh
Confidence 8887766543 123222 222332211 1222 1223333 223445433322 2455699999999
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHHHHhh
Q 013495 224 AAGFLNVPKIKGTHTAMKSGMLAAEAGFGV 253 (442)
Q Consensus 224 AAg~vdp~~g~GI~~Am~SG~lAAeai~~a 253 (442)
|+++.+|++|+||..|+.+..+.++.+.+.
T Consensus 138 A~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 138 AANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred hhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 999999999999999999999999988765
No 63
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.93 E-value=3.1e-08 Score=110.65 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=122.7
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.|..|++.|.++|++.||+|+.+++|.++. + .++++++||+|||.+|.+
T Consensus 93 ~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~----------------~~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 93 GIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A----------------LAADADLVIASDGLNSRI 143 (765)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h----------------hhcCCCEEEEcCCCCHHH
Confidence 58999999999999999999999998776531 0 124689999999999999
Q ss_pred cHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCce--EEEEEcCCCeEEEEEEEecC-C
Q 013495 89 SEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGG--SFLYHMNDRQIALGLVVALN-Y 165 (442)
Q Consensus 89 ar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gg--gwiy~~~~~~vsVGlv~~~~-~ 165 (442)
.+++...++-.. ......| .|- ............+. +. ..|. .+.|+..++....-+.+..+ +
T Consensus 144 R~~~~~~~~~~~--~~~~~~~------~w~-g~~~~~~~~~~~~~--~~---~~g~~~~~~y~~~~~~~~~~~~~~~~~~ 209 (765)
T PRK08255 144 RTRYADTFQPDI--DTRRCRF------VWL-GTHKVFDAFTFAFE--ET---EHGWFQAHAYRFDDDTSTFIVETPEEVW 209 (765)
T ss_pred HHHHHhhcCCce--ecCCCce------EEe-cCCCcccceeEEEE--ec---CCceEEEEEeeeCCCCcEEEEEcCHHHH
Confidence 876644343221 1111111 121 11100011000000 11 1121 12356554433222222211 1
Q ss_pred CC---CCCChHHHHHH----HHhCCCcccccCCCeEEeecc-eeeccCCCccCCccccCC----EEEEccCCCcccCccc
Q 013495 166 HN---PFLNPYEEFQK----FKHHPAIKPLLEGGTVVQYGA-RTLNEGGLQSIPYPVFPG----GAIIGCAAGFLNVPKI 233 (442)
Q Consensus 166 ~~---~~~~~~~~~~~----~~~~P~i~~~l~~~~~~~~ga-~~i~~gg~~~~~~~~~~g----~llvGDAAg~vdp~~g 233 (442)
.. +..+..+..+. |.......+++.......... ...+. ...++.+.++ ++|+||||..+.|..|
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~~~---~~~~~w~~gr~~~~v~liGDAAH~~~P~~G 286 (765)
T PRK08255 210 RAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFPR---VVCERWVHWNRRVPVVLMGDAAHTAHFSIG 286 (765)
T ss_pred HhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeecce---eccCCCccCCCcccEEEEEcCcccCCCCcc
Confidence 11 11222222222 221111112222111100000 00010 1134566666 9999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHhhhHHHHHHHHchhhhh
Q 013495 234 KGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAF 286 (442)
Q Consensus 234 ~GI~~Am~SG~lAAeai~~al~~-~~~l~~Y~~~~~~~~~~~el~~~r~~~~~~ 286 (442)
+|...||.++...|+.+...... ...|+.|++..+.. ..+=.+.++.....|
T Consensus 287 qG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~ 339 (765)
T PRK08255 287 SGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVE-VLRIQNAARNSTEWF 339 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH-HHHHHHHHHHhCcee
Confidence 99999999999999999764322 56799999888764 222233444444434
No 64
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.89 E-value=5.9e-10 Score=101.31 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=48.0
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCC---CCc---eeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE---KNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~---~~~---~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.+.|++| +.|+++||++|+++...+ +|. +.+.||+.+||.||.|..+||++||..+
T Consensus 53 ~~~~CIgC------~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t 115 (172)
T COG1143 53 DRDKCIGC------GLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLT 115 (172)
T ss_pred cccCCcch------hHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCC
Confidence 56779999 689999999999987643 222 4788999999999999999999999643
No 65
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.88 E-value=9.1e-10 Score=98.90 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=48.7
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
+-.|.+|+ +.||.++||++||+.+++ .+++|+|+|+.||+|..+||+++|+...
T Consensus 50 pv~C~qCe----daPC~~vCP~~AI~~~~~-----~v~V~~ekCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 50 PVVCHHCE----DAPCAEVCPVGAITRDDG-----AVQVDEEKCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred CCcCCCCC----CcchhhhCchhheeecCC-----ceEEchhhccCcchhhhcCCcceEEEEe
Confidence 55788887 799999999999998855 7999999999999999999999998763
No 66
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=98.85 E-value=1.1e-09 Score=82.25 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=35.8
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCC-CCeeE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKW 428 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~-~~I~w 428 (442)
.|+++|++| +.|..+||.++++..+.+++ +++.++.+.|++||.|..+||+ +||+.
T Consensus 3 Id~~~Ci~C------g~C~~~Cp~~~~~~i~~~~~-~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 3 IDEDKCIGC------GKCVRACPDGAIDAIEVDEG-KKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp E-TTT----------SCCCHHCCCCS-S-ECCTTT-TSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred ECcccccCh------hhHHhHcCccceeeEEecCC-eeEEeccccCcCcCcccccCCCccCCCC
Confidence 489999999 78999999877766543222 2567889999999999999996 99974
No 67
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.81 E-value=8.9e-08 Score=95.74 Aligned_cols=216 Identities=19% Similarity=0.267 Sum_probs=132.6
Q ss_pred ehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 11 SLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
.-.+|-+-|.++|... .|.+-+| +|.+++.|+ |.|+||++++ ++|+ +.+..|..+|.|||+.|.+.
T Consensus 145 hnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~-gvvkGV~yk~----k~ge-------e~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 145 HNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEE-GVVKGVTYKN----KEGE-------EVEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred eccHHHHHHHHHHhcCCCeEEeee-eHHHHHhcc-CeEEeEEEec----CCCc-------eEEEecceEEEecchhHHHH
Confidence 3458999999998764 7888877 688998876 7899999986 5553 47899999999999999999
Q ss_pred HHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCCCCCC
Q 013495 90 EKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPF 169 (442)
Q Consensus 90 r~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~~~~~ 169 (442)
|.|.+ + +..+...+.+|+- .+- .....|...+..++.|.+ --+|+.....+.+.+-+..+ +-|.
T Consensus 212 rsL~~----~--~v~~V~S~fVG~v--l~N-~~l~~p~hghvIL~~psp------il~Y~ISStEvRcl~~v~g~-~~Ps 275 (509)
T KOG1298|consen 212 RSLCD----P--KVEEVPSYFVGLV--LKN-CRLPAPNHGHVILSKPSP------ILVYQISSTEVRCLVDVPGQ-KLPS 275 (509)
T ss_pred HHhcC----C--cccccchheeeee--ecC-CCCCCCCcceEEecCCCc------EEEEEecchheEEEEecCcc-cCCc
Confidence 97622 1 1111334566652 111 112234444445566632 26899887778877655432 1122
Q ss_pred CChHHHHHHH-Hh--CCCc----cccc----CCCeEEeecceeeccCCCccCC--ccccCCEEEEccCCCcccCcccccH
Q 013495 170 LNPYEEFQKF-KH--HPAI----KPLL----EGGTVVQYGARTLNEGGLQSIP--YPVFPGGAIIGCAAGFLNVPKIKGT 236 (442)
Q Consensus 170 ~~~~~~~~~~-~~--~P~i----~~~l----~~~~~~~~ga~~i~~gg~~~~~--~~~~~g~llvGDAAg~vdp~~g~GI 236 (442)
.. .-++..| ++ .|.+ ++.+ +.|.. +..|.- ++| ....+|++++|||--+=.|++|.|+
T Consensus 276 i~-~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~i-----rsmpn~---~mpa~~~~~~G~illGDAfNMRHPltggGM 346 (509)
T KOG1298|consen 276 IA-NGEMATYMKESVAPQIPEKLRESFLEAVDEGNI-----RSMPNS---SMPATLNDKKGVILLGDAFNMRHPLTGGGM 346 (509)
T ss_pred cc-chhHHHHHHHhhCcCCCHHHHHHHHHHhhccch-----hcCccc---cCCCCcCCCCceEEEcccccccCCccCCce
Confidence 21 2223333 21 1322 2111 22222 222221 122 3456999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 013495 237 HTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQ 268 (442)
Q Consensus 237 ~~Am~SG~lAAeai~~al~~~~~l~~Y~~~~~ 268 (442)
.-|+..-.+.-+.+.. + ..|..+++..+
T Consensus 347 tV~l~Di~lLr~ll~p-l---~dL~d~ekv~~ 374 (509)
T KOG1298|consen 347 TVALSDIVLLRRLLKP-L---PDLSDAEKVSD 374 (509)
T ss_pred EeehhHHHHHHHHhcc-c---cccccHHHHHH
Confidence 9999887776665533 1 23455554443
No 68
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.81 E-value=1.5e-09 Score=89.96 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=44.7
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
+..|.+|. +.||.++||+++|..+++ +| .+.||.+.|++|+.|..+||+++|+|....+
T Consensus 6 ~~~C~hC~----~ppC~~~CP~~Ai~~~~~-~G--~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCE----DPPCVEACPTGAIYKDPE-DG--IVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BS----S-HHHHHCTTTSEEEETT-TS---EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcC----CCchhhhCCccceEEEcC-CC--eEEechhhccCchhhhhhhccCcceeecccc
Confidence 57899997 689999999999998763 35 7999999999999999999999999987654
No 69
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.65 E-value=2.4e-08 Score=77.19 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=50.3
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
.|++.|.+| +.|..+||.+++.+.+++ +...+.+|.+.|+.||.|...||.+||......
T Consensus 5 Id~~~C~~c------~~C~~~CP~~~~~~~~~~-~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 5 IDYDKCIGC------GICVEVCPAGVFDLGEDE-GGKPVVARPEECIDCGLCELACPVGAIKVDILR 64 (68)
T ss_pred ECchhcCCC------ChheeccChhhEEecccc-CcceeEeccccCccchhhhhhCCcceEEEeccc
Confidence 478899997 789999999999987643 234699999999999999999999999865433
No 70
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.61 E-value=2.1e-07 Score=90.57 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCC-cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN-KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g-~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
|-++.+|.+|.++|.++|+++||+++.++.|.+++.++++ +|.||.+....+..+|... ...+++|++||+|+|.
T Consensus 93 g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~----d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 93 GYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHV----DPLTQRSRVVVDATGH 168 (254)
T ss_pred ceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCC----CCEEEEcCEEEEeecC
Confidence 3467799999999999999999999999999999987643 6899988654333333211 1368999999999999
Q ss_pred CCcccHHHHHhcCCc
Q 013495 85 RGSLSEKLIKNFKLR 99 (442)
Q Consensus 85 ~s~lar~l~~~~gl~ 99 (442)
.|.+++.+.+++++.
T Consensus 169 ~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 169 DAEIVAVCAKKIVLE 183 (254)
T ss_pred CchHHHHHHHHcCcc
Confidence 999999998888776
No 71
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.61 E-value=3.2e-07 Score=92.99 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=43.9
Q ss_pred ccccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc-CchHHHHH
Q 013495 212 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYW 264 (442)
Q Consensus 212 ~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~-~~~l~~Y~ 264 (442)
+....++.|+||||.-+=|+.|+|...||..+...|+.+.++... ...+..|+
T Consensus 284 ~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s 337 (420)
T KOG2614|consen 284 KCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYS 337 (420)
T ss_pred ccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhcccccee
Confidence 455569999999999999999999999999999999999988864 22334444
No 72
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.59 E-value=2.6e-07 Score=90.03 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=69.7
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.|.|++++..|+..|+++|++.|++|+.+++|.++..+++++|.||.+....+..+|..+ ...+++||+||+|+|.
T Consensus 96 ~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~----~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 96 DGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV----DPLTIEAKAVVDATGH 171 (257)
T ss_pred CcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCC----CcEEEEcCEEEEEeCC
Confidence 566889999999999999999999999999999999877568999987643222223111 1368999999999999
Q ss_pred CCcccHHHHHh
Q 013495 85 RGSLSEKLIKN 95 (442)
Q Consensus 85 ~s~lar~l~~~ 95 (442)
+|.+.+.+.++
T Consensus 172 ~a~v~~~l~~~ 182 (257)
T PRK04176 172 DAEVVSVLARK 182 (257)
T ss_pred CcHHHHHHHHH
Confidence 99999977443
No 73
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.59 E-value=5.7e-08 Score=95.69 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=49.6
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
-.+..|..|. +-+|+.+||++++...++ +| .+.||.++|+.|+.|+.+||++||.+....
T Consensus 126 y~p~~C~hC~----nP~Cv~aCPtgAI~k~ee-dG--iV~ID~ekCiGCg~Cv~ACPygAi~~n~~~ 185 (321)
T TIGR03478 126 YLPRICNHCT----NPACLAACPTGAIYKREE-DG--IVLVDQERCKGYRYCVEACPYKKVYFNPQS 185 (321)
T ss_pred EecccCCCCC----CccchhhCCcCcEEEecC-CC--eEEECHHHCcchHHHHHhCCCCCcEecCCC
Confidence 4589999995 347999999999875442 34 688999999999999999999999876543
No 74
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.54 E-value=1.3e-07 Score=96.86 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=50.8
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
....++..|.+|. +.+|+.+||.+++...++ +| .+.||.+.|+.|+.|+.+||+++|.+..-
T Consensus 175 ~m~y~p~~C~HC~----nP~CV~ACPtGAI~k~ee-dG--iV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 175 FMMYLPRLCEHCL----NPACVASCPSGAIYKREE-DG--IVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred eEEECCCcCcCCC----cccchhhCccCCeEEecC-CC--eEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 3344688999995 358999999999976542 24 67899999999999999999999987743
No 75
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.53 E-value=5.8e-08 Score=83.63 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=48.0
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.|.+.|+.| +.|+.+||.+++++.++ . .++.++...|+.||.|..+||++||+++.
T Consensus 39 i~~~~Ci~C------~~C~~~CP~~ai~~~~~--~-~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 39 YDVDKCVGC------RMCVTVCPAGVFVYLPE--I-RKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred ECcccCcCc------ccHHHHCCccceEcccc--c-cceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 478999998 68999999999987653 1 25789999999999999999999998763
No 76
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=98.52 E-value=6.2e-08 Score=77.42 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=48.5
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
+.|.++|+.| +.|.-|||-+++...++ +. ...|||+.|-+||-|.-+||..||+...-
T Consensus 31 v~d~~kCi~C------~~C~~yCPe~~i~~~~~--~~-~~~idYdyCKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 31 VVDEDKCINC------KLCWLYCPEPAILEEEG--GY-KVRIDYDYCKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred EEcccccccC------ceeEEECCchheeeccC--Cc-cceeEcccccCceechhhCChhheEeEee
Confidence 4588999999 78999999999887765 21 11299999999999999999999987643
No 77
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.51 E-value=9.4e-06 Score=83.30 Aligned_cols=87 Identities=24% Similarity=0.389 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc-ccHH
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS-LSEK 91 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~-lar~ 91 (442)
...-+-+.+.-+++|++|++.|+|.+++.++ +.+.+|.+.+ |.+|.|+.||+|-|..|. .-..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~~~ 236 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWFEM 236 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC---------------CcEEecCEEEEccCcchHHHHHH
Confidence 4566778899999999999999999999987 5678888774 679999999999999876 2345
Q ss_pred HHHhcCCcccccCCCceEEEEEEEEEeeCC
Q 013495 92 LIKNFKLREKSHAQHQTYALGIKEVWEIDE 121 (442)
Q Consensus 92 l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~ 121 (442)
|.+|+|+. ..+..+.+|++ +++|.
T Consensus 237 l~~K~Gv~----~~~~p~dIGVR--vE~p~ 260 (486)
T COG2509 237 LHKKLGVK----MRAKPFDIGVR--VEHPQ 260 (486)
T ss_pred HHHhcCcc----cccCCeeEEEE--Eecch
Confidence 66778886 44557889986 45543
No 78
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.49 E-value=9.3e-08 Score=88.90 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
+..|.+|. +.||+.+||+++....+. +| -+.+|.+.||+||.|+.+||++|.......
T Consensus 66 ~~~C~HC~----~ppCv~vCPtgA~~k~~~-dG--iV~vd~d~CIGC~yCi~ACPyga~~~~~~~ 123 (203)
T COG0437 66 SISCMHCE----DPPCVKVCPTGALFKREE-DG--IVLVDKDLCIGCGYCIAACPYGAPQFNPDK 123 (203)
T ss_pred cccccCCC----CCcccccCCCcceEEecC-CC--EEEecCCcccCchHHHhhCCCCCceeCccc
Confidence 57899998 689999999999877642 36 799999999999999999999998776633
No 79
>CHL00065 psaC photosystem I subunit VII
Probab=98.48 E-value=4e-08 Score=78.63 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=46.2
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCC---CCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDE---KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~---~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++.+.|+.| +.|+.+||.+++++.+.+ .+.....++.+.|+.|+.|..+||.+||+|+
T Consensus 6 ~~~~~Ci~C------g~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 66 (81)
T CHL00065 6 KIYDTCIGC------TQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred CccccCCCh------hHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEE
Confidence 467899998 689999999998876431 1111235677899999999999999999997
No 80
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.47 E-value=1.6e-07 Score=79.04 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=48.1
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..|.+.|+.| +.|+.+||.+++.+.++ + .+.+|.+.|..|+.|...||.+||++.
T Consensus 47 ~i~~~~Ci~C------~~C~~~CP~~ai~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 47 VVDESKCVKC------YICWKFCPEPAIYIKED--G--YVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred EECcccCccc------cchhhhCCHhheEecCC--C--cEEeCchhCcCcchhhhhcCcCcEEec
Confidence 4488999998 68999999999887644 3 578999999999999999999999886
No 81
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.45 E-value=9.6e-08 Score=69.64 Aligned_cols=49 Identities=24% Similarity=0.417 Sum_probs=25.2
Q ss_pred ecCCCCCcccCCCCCcccccccccc-ceEEEecCCCCceeEEEecCCCccCCcccccCC
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDP 422 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa-~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp 422 (442)
+.|.+.|+.| +.|+++||+ ........ ...+.++.++|++||.|..+||
T Consensus 3 ~id~~~C~~C------~~C~~~CP~~~~~~~~~~---~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIGC------GRCVKVCPADNAIAIDDG---EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------------TTGGG-TT-----EEE----SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcCC------cChHHHccchhHHHhhcc---CCCeEeCcccccccChhhhhCc
Confidence 3489999999 799999999 33333332 1268889999999999999998
No 82
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.41 E-value=9.3e-08 Score=78.03 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=47.5
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecC-----------CCCc----eeEEEecCCCccCCcccccCCCCCee
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPD-----------EKNQ----LKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~-----------~~~~----~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
+...|.+.|+.| +.|+.+||.+++++... .++. ....+|.+.|+.||.|..+||++||+
T Consensus 15 ~~~i~~~~Ci~C------~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~ 88 (91)
T TIGR02936 15 VTSIDQEKCIGC------GRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQT 88 (91)
T ss_pred eEEECHhHCCCc------chHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEe
Confidence 344589999998 78999999999987631 0011 12468999999999999999999997
Q ss_pred EE
Q 013495 428 WT 429 (442)
Q Consensus 428 w~ 429 (442)
..
T Consensus 89 ~~ 90 (91)
T TIGR02936 89 HA 90 (91)
T ss_pred cC
Confidence 54
No 83
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.40 E-value=1.3e-07 Score=82.64 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=46.8
Q ss_pred CCCCCcccCCCCCcc-----ccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAG-----PESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~-----~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
|++.|++| + .|+++||.+++.+.++ +.....++.+.|+.|+.|...||++||++.
T Consensus 6 ~~~~C~gC------~~~~~~~Cv~~CP~~ai~~~~~--~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 6 YPTKCDGC------KAGEKTACVYICPNDLMHLDTE--IMKAYNIEPDMCWECYSCVKACPQGAIDVR 65 (132)
T ss_pred ccccccCc------cCCchhcCHhhcCccceEecCC--CceeeecCchhCccHHHHHHhCCcCceEEE
Confidence 78999998 6 8999999999987653 212456899999999999999999999865
No 84
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.39 E-value=8.8e-08 Score=70.57 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=32.8
Q ss_pred CCcccCCCCCccccccccccceEEEecCCCCce----eEEEecCCCccCCcccccCCCCCe
Q 013495 370 IPELVNLPEYAGPESRYCPARVYEYVPDEKNQL----KLQINAQNCLHCKACDIKDPKQNI 426 (442)
Q Consensus 370 ~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~----~~~i~~~~Ci~Cg~C~~~cp~~~I 426 (442)
+|++| +.|+++||++++++........ ....+.+.|++||.|..+||++||
T Consensus 1 kCi~C------g~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGC------GRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TT------THHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCc------chHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 47787 7899999999999977632110 001134589999999999999998
No 85
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.38 E-value=4.9e-08 Score=71.27 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCcccCCCCCccccccccccceEEEecCC--CCceeEEEecCCCccCCcccccCCCCC
Q 013495 370 IPELVNLPEYAGPESRYCPARVYEYVPDE--KNQLKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 370 ~c~~~~~~~~~~~c~~~CPa~~y~~~~~~--~~~~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
.|++| +.|+.+||.+++++.+.. .+...+.+|.+.|++||.|..+||++|
T Consensus 1 ~C~~C------~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGC------GACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--------HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCc------CchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 37777 789999999999987642 234578999999999999999999986
No 86
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.38 E-value=2.6e-07 Score=77.45 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=49.9
Q ss_pred CeEecCCCCCcccCCCCCccccccccccceEEEecCCC---CceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~---~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
+....|.+.|++| +.|+.+||.+++++.+... +.....+|...|+.|+.|...||++||++.-
T Consensus 9 ~~v~id~~~Ci~C------~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 9 TPVWVDESRCKAC------DICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred CCeEECcccccCC------cchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEec
Confidence 4445589999998 6899999999998765321 1123568899999999999999999998753
No 87
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.38 E-value=3.2e-07 Score=90.25 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCeEe-cCCCCCcccCCCCCcccccccccc-ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 361 AHLRL-RDPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 361 ~Hl~v-~d~~~c~~~~~~~~~~~c~~~CPa-~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
.|+.+ ..++.|.+|. ..+|+.+||+ ++|...++ | .+.+|.+.|++|+.|..+||+++|+|...
T Consensus 82 ~~~~~~~~~~~C~hC~----~p~Cv~aCP~~gA~~~~~~--G--~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 82 DGLEWLIRKDGCMHCR----EPGCLKACPAPGAIIQYQN--G--IVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCceEEECCccCCCCC----CccccCCCCcCCeEEEcCC--C--cEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 45442 2567899996 3579999998 78876543 4 68999999999999999999999998653
No 88
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.37 E-value=1.5e-07 Score=75.18 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=47.4
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCC---CceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~---~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
+++.+.|+.| +.|+.+||.+++++.+.++ +...+.++.+.|+.||.|...||+++|++++-
T Consensus 4 ~~~~~~Ci~C------~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T TIGR03048 4 VKIYDTCIGC------TQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVY 67 (80)
T ss_pred eecCCcCcCc------chHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEe
Confidence 3467999998 6899999999988764211 11124567789999999999999999999843
No 89
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.36 E-value=2e-07 Score=78.37 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=47.3
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.|.+.|+.| +.|+.+||.+++.+.++ + ...++.+.|+.|+.|..+||++||++.
T Consensus 48 ~d~~~Ci~C------~~C~~~CP~~ai~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 48 FNRDKCVRC------YLCYIYCPEPAIYLDEE--G--YPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EChhHCcCh------hhHHhhCCHhhEEecCC--C--cEEECchhCCCcCchhhhcCcCcEEEe
Confidence 478999998 68999999999887654 2 578899999999999999999999876
No 90
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.34 E-value=2e-07 Score=74.49 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=46.9
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCc---eeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ---LKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~---~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
+.+.|+.| +.|+.+||.+++++.+..+.. ....++.++|+.|+.|..+||.+||+++.-.|
T Consensus 7 ~~~~C~~C------~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~ 70 (81)
T PLN00071 7 IYDTCIGC------TQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLG 70 (81)
T ss_pred cCCcCcCh------hHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeeeec
Confidence 57899998 689999999999876421111 11235778999999999999999999874433
No 91
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=98.33 E-value=3.6e-07 Score=83.12 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=49.3
Q ss_pred CeEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.....|++.|+.| +.|+++||.+++...++ + ...++.+.|+.||.|..+||+++|++.
T Consensus 106 ~~~~id~~~Ci~C------g~C~~aCp~~ai~~~~~--~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 106 MVALIDEDNCIGC------TKCIQACPVDAIVGAAK--A--MHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ceEEEECCcCCCh------hHHHHhCCccceEecCC--C--ceEeecccccChhHHHHhcCcCceEee
Confidence 3455689999998 68999999999887543 2 467899999999999999999999886
No 92
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.31 E-value=2.4e-05 Score=78.01 Aligned_cols=75 Identities=31% Similarity=0.463 Sum_probs=60.4
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
..+..++-.+|.++|++.+++.|++|+++++|+++..++ +.|.||++.+ | +++|+.||.|.|.
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~---------------g-~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSD---------------G-EIRADRVVLAAGA 201 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETT---------------E-EEEECEEEE--GG
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhcc-cccccccccc---------------c-ccccceeEecccc
Confidence 445678999999999999999999999999999999987 6788899985 4 5999999999999
Q ss_pred CCcccHHHHHhcCCc
Q 013495 85 RGSLSEKLIKNFKLR 99 (442)
Q Consensus 85 ~s~lar~l~~~~gl~ 99 (442)
++ .+|++..+.+
T Consensus 202 ~s---~~l~~~~~~~ 213 (358)
T PF01266_consen 202 WS---PQLLPLLGLD 213 (358)
T ss_dssp GH---HHHHHTTTTS
T ss_pred cc---eeeeeccccc
Confidence 74 5555555553
No 93
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.31 E-value=6.6e-07 Score=70.83 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=47.1
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.+.+.|+.| +.|+.+||.+++.+.++ + ...++...|..|+.|..+||+++|+..
T Consensus 21 ~i~~~~C~~C------~~C~~~Cp~~ai~~~~~--~--~~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 21 VVDKEKCIKC------KNCWLYCPEGAIQEDEG--G--FVGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred EEcCCcCcCh------hHHHhhcCccceEecCC--C--cEEecCccCcCccchhhhCCccccEec
Confidence 3478999998 68999999999887543 2 578899999999999999999998765
No 94
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.31 E-value=3.1e-07 Score=84.80 Aligned_cols=57 Identities=25% Similarity=0.431 Sum_probs=48.8
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCC-CCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
|.+.|+.| +.|+.+||.+++.+..+. .+...+.++...|+.||.|..+||++||++.
T Consensus 36 d~~~Ci~C------g~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~ 93 (181)
T PRK08222 36 MPSQCIAC------GACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred ChhhCcch------hHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEec
Confidence 78999998 789999999999886542 2334578999999999999999999999875
No 95
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.30 E-value=3.4e-05 Score=77.00 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=110.4
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
+-.++-.+|.+.|++.|++.|++++.+++|+++..++ +.+++|.+.+ | +++|+.||.|+|+.+
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS---------------G-DVQADQVVLAAGAWA 193 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence 3466888999999999999999999999999998765 6678888763 3 799999999999985
Q ss_pred cccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCc-EEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecCC
Q 013495 87 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGE-ILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY 165 (442)
Q Consensus 87 ~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~-~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~~ 165 (442)
. .|.. ..+. .. . .+.+- .+.+... ..+. ..... .....++.|..++.+.+|-....+.
T Consensus 194 ~---~l~~-~~~~---~~-~-g~~~~----~~~~~~~-~~~~~~~~~~-------~~~~~y~~p~~~g~~~iG~~~~~~~ 252 (337)
T TIGR02352 194 G---ELLP-LPLR---PV-R-GQPLR----LEAPAVP-LLNRPLRAVV-------YGRRVYIVPRRDGRLVVGATMEESG 252 (337)
T ss_pred h---hccc-CCcc---cc-C-ceEEE----eeccccc-cCCcccceEE-------EcCCEEEEEcCCCeEEEEEeccccC
Confidence 4 2321 1222 11 1 11121 1222110 0111 10010 0122366777777888885433221
Q ss_pred CCCCCChH--HH-HHHHH-hCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCC---Cc--ccCcccccH
Q 013495 166 HNPFLNPY--EE-FQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAA---GF--LNVPKIKGT 236 (442)
Q Consensus 166 ~~~~~~~~--~~-~~~~~-~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAA---g~--vdp~~g~GI 236 (442)
.+...++. +. .+.+. ..|.+ .+.+... ...|+. ..+.++..+||... ++ ...+.+.|+
T Consensus 253 ~~~~~~~~~~~~l~~~~~~~~P~l----~~~~~~~------~~~g~r---~~t~D~~piig~~~~~~~~~~~~g~~g~G~ 319 (337)
T TIGR02352 253 FDTTPTLGGIKELLRDAYTILPAL----KEARLLE------TWAGLR---PGTPDNLPYIGEHPEDRRLLIATGHYRNGI 319 (337)
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCc----ccCcHHH------heecCC---CCCCCCCCEeCccCCCCCEEEEcccccCce
Confidence 12112221 11 12222 22432 2211111 111222 34557777888533 33 345788899
Q ss_pred HHHHHHHHHHHHHHH
Q 013495 237 HTAMKSGMLAAEAGF 251 (442)
Q Consensus 237 ~~Am~SG~lAAeai~ 251 (442)
..|...|++.|+.|.
T Consensus 320 ~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 320 LLAPATAEVIADLIL 334 (337)
T ss_pred ehhhHHHHHHHHHHh
Confidence 999999999998876
No 96
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.29 E-value=5e-07 Score=83.37 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=48.5
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCC-CCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
|.+.|+.| +.|+.+||.+++.+..+. .+...+.+|.+.|+.||.|..+||++||+++
T Consensus 36 d~~~C~~C------~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 36 NPQQCIGC------AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred ChhhCcCh------hHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEcc
Confidence 78999998 689999999999886542 2323568999999999999999999999875
No 97
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.29 E-value=2.8e-07 Score=80.84 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=45.7
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.|.+.|+.| +.|+.+||.+++...++ + .+.|+...|+.||.|+.+||+++|.+.
T Consensus 56 ~d~~~Ci~C------~~C~~~CP~~ai~~~~~--~--~~~i~~~~C~~Cg~Cv~vCP~~a~~l~ 109 (133)
T PRK09625 56 HNNEICINC------FNCWVYCPDAAILSRDK--K--LKGVDYSHCKGCGVCVEVCPTNPKSLL 109 (133)
T ss_pred EehhHCcCh------hhHHHhCCHhheEecCC--c--eEEeCcCcCcChhHHHHHCCcCceEEE
Confidence 478999998 68999999999876443 2 467899999999999999999997655
No 98
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=98.28 E-value=2e-07 Score=82.33 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCCcccCCCCCccccccccccceEEEecC--CCCce---eEEEecCCCccCCcccccCCCCCee
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPD--EKNQL---KLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~--~~~~~---~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.+.|+.| +.|.++||+.++.++.+ .+|.+ +..||...||-||.|..+||.++|.
T Consensus 110 eerCIAC------klCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 110 EERCIAC------KLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred chhhhhH------HHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 6899999 68999999998877543 24543 5679999999999999999999985
No 99
>PRK06273 ferredoxin; Provisional
Probab=98.25 E-value=3.7e-07 Score=82.86 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=46.1
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCC-----C---ceeEEEecCCCccCCcccccCCCCCeeE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-----N---QLKLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~-----~---~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
+.+.|.+| +.|+.+||.+++.+...+. + ...+.+|.+.|+.|+.|..+||++||..
T Consensus 47 d~~~CigC------g~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 47 FEELCIGC------GGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CchhCcCh------hHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 78899998 6899999999998874311 0 1247899999999999999999999854
No 100
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.23 E-value=3.4e-07 Score=90.79 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=49.2
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..+.|.+.|+.| +.|+.+||.+++.+.....+...+.++..+|+.||.|..+||++||.+.
T Consensus 42 ~~~~~~~~C~~C------~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 42 ELLFKENRCLGC------GKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred eEEEccccCCCC------chhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhh
Confidence 445689999999 7899999999987432111223689999999999999999999999774
No 101
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.22 E-value=8.2e-07 Score=90.79 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=50.7
Q ss_pred CCeEecCCCCCc--ccCCCCCcccccccccc-----ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE-Cc
Q 013495 361 AHLRLRDPKIPE--LVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT-VP 431 (442)
Q Consensus 361 ~Hl~v~d~~~c~--~~~~~~~~~~c~~~CPa-----~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~-~p 431 (442)
.|+-|.|.+.|. +|+ --|.++||. .+++++++ +| +..|..+-|+.||.|+.+||++||+-. .|
T Consensus 3 ~riAvvd~D~C~PkkC~-----~eC~~yCP~vrtg~~~I~i~~~-~g--kpvIsE~lCiGCGICvkkCPF~AI~IvnLP 73 (591)
T COG1245 3 MRIAVVDYDRCQPKKCG-----YECIKYCPVVRTGKETIEIDED-TG--KPVISEELCIGCGICVKKCPFDAISIVNLP 73 (591)
T ss_pred ceEEEeehhccCccccc-----hhhhhcCCCccCCCeeEEecCC-CC--CceeEhhhhccchhhhccCCcceEEEecCc
Confidence 467788888776 464 579999995 48888765 45 689999999999999999999999743 44
No 102
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.22 E-value=6.2e-07 Score=71.60 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=47.3
Q ss_pred CCeEecCCCCCcccCCCCCccccccccccceEEEecCCC---CceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 361 AHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 361 ~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~---~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+|... ..+.|+.| +.|+.+||.+++...+.+. +.....++.+.|+.|+.|...||+++|.++
T Consensus 2 ~~~~~-~~~~Ci~C------~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 2 SHAVK-IYDTCIGC------TQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred Ccccc-ccccCCCc------chHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEE
Confidence 45443 47999998 6899999999988754211 111235678999999999999999999976
No 103
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.20 E-value=1.3e-06 Score=79.36 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=45.1
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCC--CCc---eeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~--~~~---~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.+.|+.| +.|+++||.+++.+...+ ++. ....+|...|+.||.|..+||+++|+..
T Consensus 56 ~~~~Ci~C------~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 117 (164)
T PRK05888 56 GEERCIAC------KLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVET 117 (164)
T ss_pred CCccCCcc------cChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceec
Confidence 34699998 689999999998765421 121 1366899999999999999999999753
No 104
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.18 E-value=9.7e-07 Score=81.65 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=44.6
Q ss_pred CCCCCcccCCCCCccccccccccceEEEec--C----CCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVP--D----EKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~--~----~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.+.|+.| +.|+++||.+++.+.. + ......+.+|...|+.||.|..+||++||+++
T Consensus 60 ~~~kCi~C------g~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 60 EFDKCIAC------EVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred CcccCcCc------CChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecc
Confidence 67899999 6899999999764321 1 00112577999999999999999999999875
No 105
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.18 E-value=1.2e-06 Score=83.66 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=48.2
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.+++.|.+|. ..+|+.+||++++...++ +| .+.+|.+.|++|+.|..+||+++|.+..
T Consensus 89 ~~~~~C~~C~----~~~Cv~~CP~gAi~~~~~-~g--~v~id~~~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 89 FFRKSCQHCD----NAPCVAVCPTGASFKDEE-TG--IVDVHKDLCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred ECchhccCCc----CcChHhhCCCCcEEEeCC-CC--eEEechhhCCcchHHHHhCCCCCcEecC
Confidence 3678999995 247999999999877542 34 6889999999999999999999987753
No 106
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.16 E-value=1.9e-06 Score=93.25 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=46.8
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.+.+.|..|..-.-.+.|..+||.+++...++ + ..+.+|.++|+.|+.|..+||++||++.
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~--~-~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP--G-RRYHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecC--C-ceEEEecccCcChhHHHhhcCcCceEec
Confidence 35677777721111368999999999887643 2 1488999999999999999999999875
No 107
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.14 E-value=1.2e-06 Score=85.41 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=46.2
Q ss_pred eEecCCCCCcccCCCCCccccccccccce-EEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARV-YEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~-y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+...|++.|++| +.|.++||.++ ++....++ .+..+|...|+.||.|..+||.+||+++
T Consensus 195 i~~~~~~~C~~C------~~C~~vCP~~~vl~~~~~~~--~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 195 IAASDREKCTNC------MDCFNVCPEPQVLRMPLKKG--GSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EEeeccccCeEc------CCccCcCCCCceeeccccCC--CceEeccccccchhHHHHhCCccccccc
Confidence 444468999998 68999999985 44332211 2567899999999999999999999875
No 108
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.14 E-value=1.1e-06 Score=81.77 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=48.2
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..+.|.+.|+.| +.|+++||.+++....+ + ...++.+.|+.||.|..+||+++|++.
T Consensus 108 ~~~id~~~Ci~C------g~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 108 VAFIDEDNCIGC------TKCIQACPVDAIVGATK--A--MHTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeEEeCCcCCCC------ChhhhhCCHhhhecccC--C--ceeecCCcCCchHHHHHHcCcCceEEe
Confidence 455589999998 68999999999876533 2 457889999999999999999999986
No 109
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.11 E-value=1.7e-06 Score=83.66 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=48.2
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
.+..|.+|. ..+|+.+||++++...++ | .+.+|.+.|++|+.|..+||+++|.+...
T Consensus 96 ~~~~C~~C~----~p~Cv~~CP~~Ai~~~~~--G--~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 96 LPRLCNHCD----NPPCVPVCPVQATFQRED--G--IVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred cchhcCCcC----CccCccccCCCCEEECCC--C--CEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 478999996 247999999999876543 4 68999999999999999999999998743
No 110
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.10 E-value=3e-05 Score=78.60 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=124.7
Q ss_pred CEEEehHHHHHHHHH---HHHHCCcEEecCCeEeEEEE------cCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcE
Q 013495 7 GNRKSLSQLVRWLGG---KAEELGVEIYPGFAASEILY------DADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRI 77 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~---~Ae~~Gvei~~g~~v~~i~~------~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~ 77 (442)
++++.-..+-..|.. .++..-++|.....+.++.. ++++...-+.+.+ |..+..|+
T Consensus 144 a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~d---------------g~~~~~~L 208 (481)
T KOG3855|consen 144 AFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTD---------------GINFATDL 208 (481)
T ss_pred eeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEecc---------------Cceeeece
Confidence 466666666666653 33446799999999887654 3456667777765 57899999
Q ss_pred EEeccCCCCcccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEE
Q 013495 78 TLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIAL 157 (442)
Q Consensus 78 vI~AdG~~s~lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsV 157 (442)
+|+|||.+|.+.+. .+++- ......+ .|+.....+..+...++..++-| ++ .|.-=+-|+.|+..++
T Consensus 209 LigAdg~Ns~vR~~----snid~-~~~ny~~--havVAtl~l~~~~~~~~~AwQRF---lP---~GpiAllpl~d~~s~L 275 (481)
T KOG3855|consen 209 LIGADGFNSVVRKA----SNIDV-ASWNYDQ--HAVVATLKLEEEAILNGVAWQRF---LP---TGPIALLPLSDTLSSL 275 (481)
T ss_pred eeccccccchhhhh----cCCCc-ccccccc--eeeeEEEEecccccccchhHHhc---CC---CCceeecccccccccc
Confidence 99999999998764 35552 1222222 23333345555433445444433 11 1211234556665555
Q ss_pred EEEEecCCCC--CCCChH---HHHH-HH-HhCCCcc-----------------cccCC----C------eEEe--eccee
Q 013495 158 GLVVALNYHN--PFLNPY---EEFQ-KF-KHHPAIK-----------------PLLEG----G------TVVQ--YGART 201 (442)
Q Consensus 158 Glv~~~~~~~--~~~~~~---~~~~-~~-~~~P~i~-----------------~~l~~----~------~~~~--~ga~~ 201 (442)
-..+...... ..+.+. +++. .| .+.|.+. .++.. + .+.+ -+.|+
T Consensus 276 vWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa 355 (481)
T KOG3855|consen 276 VWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRA 355 (481)
T ss_pred eeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEeccccee
Confidence 5544321000 000010 0000 00 0111000 00000 0 0111 11222
Q ss_pred eccCCCccCCccccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 202 LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 202 i~~gg~~~~~~~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
.-.-|+.-....+.+|..||||||.-+.|+.|+|+......-....+++.+++..
T Consensus 356 ~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~ 410 (481)
T KOG3855|consen 356 QFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVS 410 (481)
T ss_pred ecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHh
Confidence 2223444455788999999999999999999999999999999999888887765
No 111
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.10 E-value=1.5e-06 Score=71.42 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=48.6
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
..+.+.|+.| +.|..+||.+++++..+......+.++...|+.|+.|..+||.+||++..
T Consensus 25 ~~~~~~Ci~C------g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~ 84 (99)
T COG1145 25 VIDAEKCIGC------GLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAE 84 (99)
T ss_pred EeCccccCCC------CCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhh
Confidence 3478889998 89999999999988432100237999999999999999999999987653
No 112
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.10 E-value=0.0003 Score=72.78 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=55.8
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.++=..+.+.|++.|++.|++|+++++|+++..++ +.+++|++.+ .+++|+.||.|.|..+
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~----------------~~~~a~~VV~a~G~~~-- 257 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGG----------------GVITADAYVVALGSYS-- 257 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCC----------------cEEeCCEEEECCCcch--
Confidence 34555888999999999999999999999998776 5566777652 4799999999999985
Q ss_pred cHHHHHhcCCc
Q 013495 89 SEKLIKNFKLR 99 (442)
Q Consensus 89 ar~l~~~~gl~ 99 (442)
+.+++.+|++
T Consensus 258 -~~l~~~~g~~ 267 (416)
T PRK00711 258 -TALLKPLGVD 267 (416)
T ss_pred -HHHHHHhCCC
Confidence 3444445654
No 113
>PRK06991 ferredoxin; Provisional
Probab=98.10 E-value=1.9e-06 Score=84.27 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=47.4
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.|.+.|+.| +.|+.+||.+++.+..+ + ...++...|+.||.|..+||.++|++.
T Consensus 81 ~id~~~CigC------g~Cv~aCP~~AI~~~~~--~--~~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 81 VIDEQLCIGC------TLCMQACPVDAIVGAPK--Q--MHTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred EEccccCCCC------cHHHHhCCHhheecccc--c--ceeeCHhhCCCchHHHhhCCcCCeEee
Confidence 4588999999 78999999999877543 2 467889999999999999999999876
No 114
>PRK07118 ferredoxin; Validated
Probab=98.08 E-value=2.2e-06 Score=84.42 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
+...|+.| +.|+.+||.+++++.++ ...||++.|+.||.|..+||+++|+|...+.
T Consensus 211 ~~~~Ci~C------g~Cv~~CP~~AI~~~~~-----~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 211 CEVGCIGC------GKCVKACPAGAITMENN-----LAVIDQEKCTSCGKCVEKCPTKAIRILNKPP 266 (280)
T ss_pred cccccccc------hHHHhhCCcCcEEEeCC-----cEEEcCCcCCCHHHHHHhCCccccEeecccc
Confidence 36778888 68999999999999765 6889999999999999999999999874433
No 115
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.07 E-value=2.9e-06 Score=73.11 Aligned_cols=56 Identities=27% Similarity=0.381 Sum_probs=44.5
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCC--CCc---eeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~--~~~---~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.+.|+.| +.|+.+||.+++.+.... ++. ..+.++...|+.||.|..+||+++|+++
T Consensus 42 ~~~Ci~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIGC------TLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcCc------chhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccc
Confidence 4899998 689999999988765321 111 2467899999999999999999999754
No 116
>PRK08764 ferredoxin; Provisional
Probab=98.07 E-value=2.4e-06 Score=75.17 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=46.5
Q ss_pred CeEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++.+.+.+.|+.| +.|+++||.++++.... + ...++.+.|+.||.|..+||+++|+++
T Consensus 78 ~~~~~~~~~Ci~C------~~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 78 QVAWIVEADCIGC------TKCIQACPVDAIVGGAK--H--MHTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred eeEEECcccCcCc------chHHHhCChhhcCccCC--C--ceeecCCcCcCccchhhhcCccceEeC
Confidence 3444456899998 68999999999876432 2 456889999999999999999999873
No 117
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.06 E-value=2.3e-06 Score=71.46 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
+.+.|..| +.|+.+||.+++.+... +...+.++...|+.||.|..+||+++|.
T Consensus 32 ~~~~C~~C------~~C~~~CP~~~i~~~~~--g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~ 84 (101)
T TIGR00402 32 FSAVCTRC------GECASACENNILQLGQQ--GQPTVEFDNAECDFCGKCAEACPTNAFH 84 (101)
T ss_pred CcCcCcCh------hHHHHHcCcccceeccC--CceeeEecCccCcCccChhhHCCccccC
Confidence 45789988 68999999999887543 3235789999999999999999999985
No 118
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.05 E-value=2.6e-06 Score=78.68 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=45.9
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
...|.+|. +.+|+.+||++++...++ .+.+|.+.|++|+.|..+||+++|++.
T Consensus 55 ~~~C~~C~----~~~C~~~Cp~~ai~~~~~-----~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCE----DAPCANVCPNGAISRDKG-----FVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcC----CcHHHHHcCcccEEccCC-----eEEeChhhCCCcchhhhhCCccCeEee
Confidence 57898985 458999999999987543 688999999999999999999999875
No 119
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.04 E-value=3.3e-06 Score=76.63 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=41.4
Q ss_pred cccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
+.|+.+||.+++++..+..+...+.||.++|+.||.|..+||++||+.+..
T Consensus 110 ~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~~ 160 (163)
T PRK10194 110 RRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYL 160 (163)
T ss_pred CcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEeccc
Confidence 689999999999986543332246889999999999999999999987643
No 120
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.02 E-value=2.5e-06 Score=88.63 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=45.9
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
.|++.|+.| +.|+.+||.+++...+. ...++.+.|..|+.|...||+++|+.
T Consensus 7 id~~~Ci~C------~~C~~~CP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 7 IDPEICIRC------NTCEETCPIDAITHDDR-----NYVVKADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eCcccCcCc------cchhhhCCcccEeccCC-----ceEeCcccCcCHHHHHhhcCccccee
Confidence 388999999 68999999999877543 57789999999999999999999984
No 121
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=97.99 E-value=1.7e-06 Score=87.52 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=39.7
Q ss_pred ccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 380 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 380 ~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.+.|+..||.+++++.++. ...++.+|.++|++||.|..+||++||+
T Consensus 186 ~~~Cv~~CP~~Ai~~~~~~-~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 186 IPSVVAACPTGALKPRRDG-KNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred CCceEeeCchhhceecccC-CCCceeeccccCCcCCchHHhCchhhcc
Confidence 4799999999999985431 1237999999999999999999999975
No 122
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.99 E-value=2e-05 Score=74.07 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=68.7
Q ss_pred cccCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEecc
Q 013495 3 YCHNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 82 (442)
Q Consensus 3 ~~~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~Ad 82 (442)
+.+|-|+++-.+|...|+.+|.++|++|+..+.|.++...++++|.||.++-.-+...|-+. .-.+|+||+||+|+
T Consensus 86 ~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHv----DPl~i~ak~ViDaT 161 (230)
T PF01946_consen 86 YGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHV----DPLTIRAKVVIDAT 161 (230)
T ss_dssp -SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-----B-EEEEESEEEE--
T ss_pred eCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCC----CcceEEEeEEEeCC
Confidence 34567888999999999999999999999999999998877679999987643333333221 12689999999999
Q ss_pred CCCCcccHHHHHhcCC
Q 013495 83 GCRGSLSEKLIKNFKL 98 (442)
Q Consensus 83 G~~s~lar~l~~~~gl 98 (442)
|-.+.+.+.+.+|..+
T Consensus 162 GHda~v~~~~~kk~~~ 177 (230)
T PF01946_consen 162 GHDAEVVRVLAKKLKL 177 (230)
T ss_dssp -SSSSSTSHHHHHHHH
T ss_pred CCchHHHHHHHHHhhh
Confidence 9999999888776643
No 123
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.99 E-value=1.5e-05 Score=90.63 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=40.7
Q ss_pred CCCCCcccCCCCCccccccccccceE-EEec-C-CCCceeEEEecCC-CccCCcccccCCCCCeeE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVY-EYVP-D-EKNQLKLQINAQN-CLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y-~~~~-~-~~~~~~~~i~~~~-Ci~Cg~C~~~cp~~~I~w 428 (442)
+.+.|.+|.. .++.|+.+||.+++ .+.. + ++. ...|+.+. |++||.|...||+++...
T Consensus 879 ~~~rC~~c~~--~Cg~Cv~vCP~~Aii~i~~~~~~~~--~~~i~~d~~C~~CG~C~~vCP~~a~~~ 940 (1012)
T TIGR03315 879 ESQRCLECSY--VCEKCVDVCPNRANIVIYVPGFRDQ--FQIVHLDGMCNECGNCATFCPYDGAPY 940 (1012)
T ss_pred ccccccCCCC--CCCChhhhCChhhhhccccccccCC--ceeeecCccccccchHHHhCCCCcccc
Confidence 4589998653 56899999999974 3321 1 112 23344445 999999999999998653
No 124
>PRK09898 hypothetical protein; Provisional
Probab=97.99 E-value=6e-06 Score=77.96 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=47.4
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++..|..|. +.+|+.+||.+++...++ .+ .+.+|.++|++|+.|..+||+++|...
T Consensus 119 ~~~~C~~C~----~~~C~~~CP~gAi~~~~~-~g--~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 119 TADTCRQCK----EPQCMNVCPIGAITWQQK-EG--CITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred eCccCCCcc----CcchhhhCCcceEEeecc-CC--eEEeccccCCCcCcccccCCCCCCEec
Confidence 578999995 358999999999887643 23 688999999999999999999998765
No 125
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.97 E-value=4.1e-06 Score=84.05 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.+..|.+|. +.+|+.+||.+++...++ ++ .+.+|.+.|+.|+.|..+||+++|+++.
T Consensus 108 ~~~~C~hC~----~p~Cv~aCP~gAi~k~~~-~g--~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 108 IKKQCMHCV----DPNCVSVCPVSALTKDPK-TG--IVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccCCCcC----chhhHhhCCCCCEEeccc-CC--cccCCHHHcCcccHHHHhCCccceeccc
Confidence 367899995 357999999999987542 23 6789999999999999999999997653
No 126
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.97 E-value=3.2e-06 Score=81.48 Aligned_cols=56 Identities=25% Similarity=0.352 Sum_probs=48.6
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
.|++.|..| |.|.++|+-+|+.+.++ + ++.+|...|-.||+|.+.||..||+.+.-
T Consensus 66 i~~e~C~~C------G~C~~vC~f~Ai~~~~~--~--~~~~~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 66 IDPEKCIRC------GKCAEVCRFGAIVVLPG--G--KPVLNPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred cChhhcccc------CcHHHhCCCCeEEEcCC--C--ceecCcccccCcccceeeCCCcccccccc
Confidence 477889998 89999999999987554 3 79999999999999999999999986543
No 127
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.97 E-value=4.1e-06 Score=82.29 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=44.2
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEE--ecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~--~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++..|++.|.+| +.|.++||.++... ..+++ ....+|...|+.||.|+.+||.+||+++
T Consensus 202 i~~~d~~~C~~C------~~C~~~CP~~~i~~~~~~~~~--~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 202 VKAHDRQKCTRC------MDCFHVCPEPQVLRPPLKGKQ--SPSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred cccCCcccCccc------CCcCCcCCCcceecccccCCC--ccceeCcccCcChhHHHhhcCccceeec
Confidence 443488999998 68999999986422 11111 1235888999999999999999999875
No 128
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.97 E-value=3.8e-06 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEecCCCccCCcccccCCCCCee
Q 013495 404 LQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 404 ~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
+.+|.+.|++||.|..+||++||+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 478999999999999999999985
No 129
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.96 E-value=0.00089 Score=69.16 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=103.8
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC-c
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG-S 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s-~ 87 (442)
.++-..+...|++.|++.|++++.+++|+++..++++.+++|+|.+ + +++|+.||+|.|.++ .
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~~ 242 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSSV 242 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhHH
Confidence 4566678888999999999999999999999865446777888764 3 689997766666554 3
Q ss_pred ccHHHHHhcCCcccccCCCceEEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEec-CCC
Q 013495 88 LSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVAL-NYH 166 (442)
Q Consensus 88 lar~l~~~~gl~~~~~~~~~~~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~-~~~ 166 (442)
+.+ ..+++. ...+....+-+ .++.......+++. ..++.++.|..++.+-+|-.... +-.
T Consensus 243 l~~----~~g~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~--------~~~~~y~~p~~~g~~~ig~~~~~~~~~ 303 (407)
T TIGR01373 243 VAA----MAGFRL--PIESHPLQALV-----SEPLKPIIDTVVMS--------NAVHFYVSQSDKGELVIGGGIDGYNSY 303 (407)
T ss_pred HHH----HcCCCC--CcCcccceEEE-----ecCCCCCcCCeEEe--------CCCceEEEEcCCceEEEecCCCCCCcc
Confidence 433 345542 12222111111 11110001112211 11334566776777777743221 000
Q ss_pred CCCCCh--H-HHHHHHH-hCCCcccccCCCeEE-eecceeeccCCCccCCccccCCEEEEccCC--Ccc--cCcccccHH
Q 013495 167 NPFLNP--Y-EEFQKFK-HHPAIKPLLEGGTVV-QYGARTLNEGGLQSIPYPVFPGGAIIGCAA--GFL--NVPKIKGTH 237 (442)
Q Consensus 167 ~~~~~~--~-~~~~~~~-~~P~i~~~l~~~~~~-~~ga~~i~~gg~~~~~~~~~~g~llvGDAA--g~v--dp~~g~GI~ 237 (442)
....++ . ..++.+. ..|.+ ++.+.. .|. |+ .....++.-+||..- |++ --.++.|+.
T Consensus 304 ~~~~~~~~~~~l~~~~~~~~P~l----~~~~~~~~w~-------G~---~~~t~D~~PiIg~~~~~gl~~a~G~~g~G~~ 369 (407)
T TIGR01373 304 AQRGNLPTLEHVLAAILEMFPIL----SRVRMLRSWG-------GI---VDVTPDGSPIIGKTPLPNLYLNCGWGTGGFK 369 (407)
T ss_pred CcCCCHHHHHHHHHHHHHhCCCc----CCCCeEEEec-------cc---cccCCCCCceeCCCCCCCeEEEeccCCcchh
Confidence 111111 1 2222222 23433 222222 121 11 123445666666542 222 125688999
Q ss_pred HHHHHHHHHHHHHHh
Q 013495 238 TAMKSGMLAAEAGFG 252 (442)
Q Consensus 238 ~Am~SG~lAAeai~~ 252 (442)
.|-..|++.|+.|..
T Consensus 370 ~ap~~G~~la~li~~ 384 (407)
T TIGR01373 370 ATPASGTVFAHTLAR 384 (407)
T ss_pred hchHHHHHHHHHHhC
Confidence 999999999998763
No 130
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=97.95 E-value=1.4e-06 Score=83.35 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=68.4
Q ss_pred cchhhhcCCCCCCCCCCCCcCcCcccceee---cCccccCCC--------------CCCeEecCCCCCcccCCCCCcccc
Q 013495 321 ATDAARLHSPIEYPKPDGVLSFDVPTSLHR---SNTNHEHDQ--------------PAHLRLRDPKIPELVNLPEYAGPE 383 (442)
Q Consensus 321 ~~~~~~~~~~i~y~~pdg~l~fd~~~~~~~---~~~~~~~d~--------------~~Hl~v~d~~~c~~~~~~~~~~~c 383 (442)
..+|..+..+++|--|..+.+.|-+..+.+ .|..-+-.. +....+.|.+.|..| +.|
T Consensus 109 ~~~~~~~~V~vdi~IpGCPp~p~~i~~~l~~ll~g~~~~l~~~~~~~~~~~~~~~~~~~~~~id~~~C~~C------~~C 182 (228)
T TIGR03294 109 SFVPITDVIDVDLAIPGCPPSPEAIRNVCVALLNGDMEYLQPLAALAEEGTEACGCDLMTKVVNQGLCMGC------GTC 182 (228)
T ss_pred CCcCHHHcccCCEEeeCCCCCHHHHHHHHHHHHcCCCcccchHHHhhhhccccccccceeEEEChhhCcCh------hHH
Confidence 356667777888888988888775533221 222211000 011224578999998 689
Q ss_pred ccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 384 SRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 384 ~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
..+||.+++++.++ +..+|.+.|..|+.|..+||++.|.
T Consensus 183 ~~aCP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 183 AAACPTRAIEMEDG-----RPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred HHhCCHhhEEEeCC-----cEEEChhhccCHHHHHHHcCCCCcc
Confidence 99999999988654 5779999999999999999998863
No 131
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=97.95 E-value=3.6e-06 Score=80.98 Aligned_cols=50 Identities=26% Similarity=0.392 Sum_probs=45.1
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
|++.|..| +.|..+||.+++.+.++ +..+|.+.|..||.|...||.++|+
T Consensus 146 d~~~C~~C------~~C~~~CP~~ai~~~~~-----~~~i~~~~C~~Cg~C~~~CP~~AI~ 195 (234)
T TIGR02700 146 DRKRCKGC------GICVDACPRSAIDMVDG-----KAFIRLLKCVGCGKCKEACPYNAIH 195 (234)
T ss_pred ChhHCcCc------chHHHhCCcccEEecCC-----ceEEchhhCCccchHHhhCCCCcee
Confidence 77899998 68999999999988654 5789999999999999999999987
No 132
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.93 E-value=6.7e-06 Score=74.45 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
+..|..|. +.+|+++||++++....+ ++ .+.+|.+.|+.|+.|..+||+++|.|....
T Consensus 61 ~~~C~~C~----~~~C~~~CP~~ai~~~~~-~~--~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~ 118 (161)
T TIGR02951 61 SISCNHCA----DPACVKNCPTGAMYKREE-DG--LVLVDQDKCIGCRYCVWACPYGAPQYDPQQ 118 (161)
T ss_pred CccCCCcC----CcchHHhCCCCCEEeecC-CC--cEEECHHhCCCchHHHhhCCCCCcEEcCCC
Confidence 67899985 358999999999876522 23 689999999999999999999999987543
No 133
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=97.93 E-value=3.8e-06 Score=81.51 Aligned_cols=51 Identities=18% Similarity=0.396 Sum_probs=45.7
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee--EE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK--WT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~--w~ 429 (442)
+.++|..| +.|+..||.++++..+ -++|+++.|+.|+.|..+||+++++ |.
T Consensus 191 ~e~kc~~c------~~cv~~cp~~Ai~~~~------~~~I~~~~ci~c~~c~~ac~~gav~~~W~ 243 (354)
T COG2768 191 VEEKCYDC------GLCVKICPVGAITLTK------VVKIDYEKCIGCGQCMEACPYGAVDQNWE 243 (354)
T ss_pred eeeccccc------chhhhhCCCcceeccc------ceeechhhccchhhhhhhccCcccccchh
Confidence 46899998 7999999999998763 5999999999999999999999975 75
No 134
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.91 E-value=4.3e-06 Score=83.88 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=43.1
Q ss_pred CCCCCcccCCCCCcccccccccc---ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 367 DPKIPELVNLPEYAGPESRYCPA---RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa---~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
|.+.|+.| +.|+++||. +++.+.+. ++.+|.+.|+.||.|+.+||++||+
T Consensus 167 d~~~C~~C------g~C~~~Cp~~a~~ai~~~~~-----~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 167 DADRCIGC------GACVKVCKKKAVGALSFENY-----KVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred eCccCCcc------hHHHHhcChhhcCceeccCC-----eEEeCCCcCcCcchhhhhCCHhhcc
Confidence 67899998 689999996 56666433 7899999999999999999999975
No 135
>PRK13409 putative ATPase RIL; Provisional
Probab=97.88 E-value=7.6e-06 Score=88.88 Aligned_cols=62 Identities=26% Similarity=0.412 Sum_probs=48.3
Q ss_pred CeEecCCCCCc--ccCCCCCcccccccccc-----ceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE-Cc
Q 013495 362 HLRLRDPKIPE--LVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT-VP 431 (442)
Q Consensus 362 Hl~v~d~~~c~--~~~~~~~~~~c~~~CPa-----~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~-~p 431 (442)
+|-|.|.+.|. +|+ --|.++||. .|+++.++ ++ +..|+.+-|+.||-|+.+||++||+-. .|
T Consensus 3 ~~~~~~~~~c~~~~c~-----~~c~~~cp~~~~~~~~~~~~~~-~~--~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p 72 (590)
T PRK13409 3 RIAVVDYDRCQPKKCN-----YECIKYCPVVRTGEETIEIDED-DG--KPVISEELCIGCGICVKKCPFDAISIVNLP 72 (590)
T ss_pred eEEEeeccccCcchhh-----hhHHhhCCCcccCCeEEEEcCC-CC--CceeeHhhccccccccccCCcceEEEeeCc
Confidence 45566767665 464 579999996 47888654 22 899999999999999999999999843 44
No 136
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.85 E-value=4.4e-05 Score=86.61 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=39.4
Q ss_pred CCCCCcccCCCCCccccccccccce-EEEe-cC-CCCceeEEEecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARV-YEYV-PD-EKNQLKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~-y~~~-~~-~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+.+.|.+|.. -++.|+.+||.+| +++. ++ +.....+.++ +.|++||.|...||.++
T Consensus 884 ~~~rC~~C~~--~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~-~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 884 EAARCLECNY--VCEKCVDVCPNRANVSIAVPGFQNRFQIVHLD-AMCNECGNCAQFCPWNG 942 (1019)
T ss_pred cccccCCccc--ccchhhhhCCcccccccccCCcccCCceEEcC-ccCccccchhhhCCCCC
Confidence 5778999842 3589999999999 2222 11 0111245554 99999999999999876
No 137
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.84 E-value=2.8e-06 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=21.5
Q ss_pred EEEecCCCccCCcccccCCCCCe
Q 013495 404 LQINAQNCLHCKACDIKDPKQNI 426 (442)
Q Consensus 404 ~~i~~~~Ci~Cg~C~~~cp~~~I 426 (442)
++||.++|++||.|..+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 68999999999999999999986
No 138
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.84 E-value=7e-06 Score=74.85 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=43.2
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecC--C---CC-ceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPD--E---KN-QLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~--~---~~-~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.+.|+.| +.|+++||.++..+... . .. ...+.+|...|+.||.|..+||++||++.
T Consensus 57 ~~~~Ci~C------g~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 57 EFDKCIAC------EVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred ccccCCCc------CcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecC
Confidence 56889998 78999999987543211 0 00 01467888999999999999999999764
No 139
>PLN02612 phytoene desaturase
Probab=97.83 E-value=0.001 Score=72.23 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
..+.+-|++..++.|++|+++++|.+|..++++.+++|++.+ |.+++|+.||.|...
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 356778888888899999999999999997778788888764 467999999999754
No 140
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.83 E-value=0.0021 Score=68.92 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=60.9
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+++=.++...|++.|++.||+|+.+++|+++..++ +.+++|++.+. .+|+ ..+|+|++||.|.|+++
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa- 190 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWA- 190 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcch-
Confidence 367888999999999999999999999999999875 67888887431 1121 35899999999999994
Q ss_pred ccHHHHHhcCCc
Q 013495 88 LSEKLIKNFKLR 99 (442)
Q Consensus 88 lar~l~~~~gl~ 99 (442)
.++.+..|++
T Consensus 191 --~~l~~~~g~~ 200 (516)
T TIGR03377 191 --GRIAEYAGLD 200 (516)
T ss_pred --HHHHHhcCCC
Confidence 4555555654
No 141
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.81 E-value=1.4e-05 Score=88.09 Aligned_cols=55 Identities=25% Similarity=0.525 Sum_probs=47.3
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.+..|..|. ..+|+.+||.+++...++ .+.+|.++|+.|+.|..+||+++|++..
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 52 SAVTCHHCE----DAPCARSCPNGAISHVDD-----SIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CCccCCCCC----ChhHhhhCCccceeccCC-----eEEEecccccCcChhcccCCccCeeecc
Confidence 478999996 357999999999877544 6889999999999999999999998863
No 142
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.80 E-value=0.0003 Score=72.12 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=52.0
Q ss_pred CEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 7 GNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
...++-..+.+.|++.|++ |++|+.+++|+++..++ +. ++|+|.+ |..++|+.||.|.|..+
T Consensus 129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDAN---------------GEVIAASVVVLANGAQA 190 (381)
T ss_pred CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCC---------------CCEEEcCEEEEcCCccc
Confidence 3456888999999999999 99999999999998765 33 5677753 44689999999999986
Q ss_pred c
Q 013495 87 S 87 (442)
Q Consensus 87 ~ 87 (442)
.
T Consensus 191 ~ 191 (381)
T TIGR03197 191 G 191 (381)
T ss_pred c
Confidence 5
No 143
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.80 E-value=1.5e-05 Score=83.07 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=47.0
Q ss_pred cCCCCCcccCCCCCccccccccccc---eEEEecCCCCceeEEEecCCCccCCcccccCCC-CCeeEECc
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPAR---VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTVP 431 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~---~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~-~~I~w~~p 431 (442)
.|.+.|+.| +.|+.+||.+ ++.+.++ +...+.++.+.|+.|+.|..+||+ +||++...
T Consensus 339 ~~~~~C~~C------~~C~~~Cp~~~~~ai~~~~~--~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 339 IDQDKCIGC------GRCYIACEDTSHQAIEWDED--GTRTPEVIEEECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred ECHHHCCCC------CcccccCCCcchhheeeccC--CCceEEechhhCcccchHHhhCCCCCCEEEecc
Confidence 378999998 7999999975 5665442 223678999999999999999999 99987743
No 144
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.80 E-value=5.6e-06 Score=85.04 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=45.3
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEE--ecCCCCc-------eeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~--~~~~~~~-------~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.|.+.|+.| +.|+++||.+++.. ....++. ....+|.+.|+.||.|+..||++||++.
T Consensus 3 ~id~~kCi~C------g~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 3 VRDMSKCIGC------GRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EechhhCCcC------hHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 3488999998 79999999998762 1111111 1245899999999999999999999765
No 145
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=97.79 E-value=6.6e-06 Score=80.85 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=42.2
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDP 422 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp 422 (442)
|++.|.+| +.|+.+||.+|+++... ++.++.++|+.||.|+.+||
T Consensus 170 ~~E~c~gc------~~cv~~C~~gAI~~~~~-----~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 170 DEELCRGC------GKCVKVCPTGAITWDGK-----KLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred CHHHhchh------HhHHHhCCCCceeeccc-----eEEEehhhccCccHHhhhCC
Confidence 78999998 69999999999999764 89999999999999999999
No 146
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.78 E-value=8.6e-06 Score=81.64 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=44.5
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEe--c--CCCC----ceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYV--P--DEKN----QLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~--~--~~~~----~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+.|.+.|+.| +.|..+||.+++... . +..+ ...+.+|+..|..|+.|..+||++||++.
T Consensus 243 ~id~~~Ci~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 243 VIDHSKCIMC------RKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred EECcccCcCc------ccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEec
Confidence 4488999999 689999999987431 1 1011 01345688899999999999999999875
No 147
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.73 E-value=2.3e-05 Score=76.15 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=52.9
Q ss_pred ecCCCCCc-----ccCCCCCcccccccccc--ceEEEecCCC---Cc---eeEEEecCCCccCCcccccCCCC--CeeEE
Q 013495 365 LRDPKIPE-----LVNLPEYAGPESRYCPA--RVYEYVPDEK---NQ---LKLQINAQNCLHCKACDIKDPKQ--NIKWT 429 (442)
Q Consensus 365 v~d~~~c~-----~~~~~~~~~~c~~~CPa--~~y~~~~~~~---~~---~~~~i~~~~Ci~Cg~C~~~cp~~--~I~w~ 429 (442)
+.|.+.|. .| +.|.++||. +++++....+ +. ..+.||.+.|+.||.|..+||++ +|+-.
T Consensus 133 ~id~~~Ci~~~~~~C------~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~ 206 (254)
T PRK09476 133 LVDQENCLNFQGLRC------DVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVL 206 (254)
T ss_pred ecchhhccccCCCch------HHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEe
Confidence 36889998 67 689999996 8998865311 11 24789999999999999999998 88743
Q ss_pred ---CcCCCCCCccc
Q 013495 430 ---VPEGGGGPGYS 440 (442)
Q Consensus 430 ---~p~gg~G~~y~ 440 (442)
+-.|..|-.|+
T Consensus 207 p~~~~~g~~g~~~~ 220 (254)
T PRK09476 207 PRSLAKGKLGHHYR 220 (254)
T ss_pred hhhhhccccccCcc
Confidence 34566666664
No 148
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=97.71 E-value=1.8e-05 Score=80.52 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=43.6
Q ss_pred cCCCCCcccCCCCCccccc--cccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 366 RDPKIPELVNLPEYAGPES--RYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~--~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
.+++.|+.| +.|. .+||.+++.. + ..+|.+.|++|+.|...||++||+++.+
T Consensus 299 id~dkCi~C------g~C~~~~aCPt~AI~~--~------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 299 YNPERCENC------DPCLVEEACPVPAIKK--D------GTLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred EchhhCcCC------CCCcCCcCCCHhhEec--c------ceeChHhCcChHHHHhhCCccceEEeCC
Confidence 478899998 6794 8999999862 2 2588999999999999999999998643
No 149
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.68 E-value=4e-05 Score=72.62 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=45.9
Q ss_pred cCCCCCc-----ccCCCCCcccccccccc--ceEEEecCC--CCc-eeEEEecCCCccCCcccccCCCC--CeeEEC
Q 013495 366 RDPKIPE-----LVNLPEYAGPESRYCPA--RVYEYVPDE--KNQ-LKLQINAQNCLHCKACDIKDPKQ--NIKWTV 430 (442)
Q Consensus 366 ~d~~~c~-----~~~~~~~~~~c~~~CPa--~~y~~~~~~--~~~-~~~~i~~~~Ci~Cg~C~~~cp~~--~I~w~~ 430 (442)
.|.+.|. .| +.|.++||. +++++.... .+. ....||.+.|+.||.|..+||++ ||+-..
T Consensus 128 id~~~C~~~~g~~C------~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~ 198 (213)
T TIGR00397 128 VGHETCLNYKGLNC------SICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLP 198 (213)
T ss_pred ECCCCcccCCCCCc------ccchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEee
Confidence 5788998 77 689999998 788876421 111 25789999999999999999987 676543
No 150
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.68 E-value=1.3e-05 Score=72.85 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=31.9
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCC-----ccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNC-----LHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~C-----i~Cg~C~~~cp~~~I~w~ 429 (442)
.+.+.|..| +.|..+||+++++....... ....++.++| +.|+.|..+||++||++.
T Consensus 63 ~~~~~C~~C------~~C~~~CP~~ai~~~~~~~~-~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~ 124 (163)
T PRK10194 63 FKNNECSFC------YACAQACPESLFSPRHTRAW-DLQFTIGDACLAYQSVECRRCQDSCEPMAIIFR 124 (163)
T ss_pred ecCCCCCCc------hhhHhhCcchheeccccccc-ceeeeecccCCCccCCCcCcchhhCCHhHeEee
Confidence 345566665 46777777776654322100 1233345555 567777777777777665
No 151
>PRK13795 hypothetical protein; Provisional
Probab=97.67 E-value=1.9e-05 Score=86.37 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=47.1
Q ss_pred EecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 364 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 364 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.+.+.+.|..| +.|+.+||.+++.+.++ ...+.+|.+.|++|+.|..+||.++|.
T Consensus 576 ~v~~~~~C~~C------g~C~~~CP~~ai~~~~~---~~~~~id~~~C~~Cg~C~~aCP~~a~~ 630 (636)
T PRK13795 576 LLRRAAECVGC------GVCVGACPTGAIRIEEG---KRKISVDEEKCIHCGKCTEVCPVVKYK 630 (636)
T ss_pred EEEccccCCCH------hHHHHhCCcccEEeecC---CceEEechhhcCChhHHHhhcCCCeeE
Confidence 45678999998 68999999999988654 225889999999999999999999975
No 152
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.62 E-value=2.3e-05 Score=86.06 Aligned_cols=54 Identities=26% Similarity=0.570 Sum_probs=46.8
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++..|..|. ..+|.++||.+++...++ .+.+|.+.|+.|+.|..+||+++|++.
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 52 NPVACHHCN----NAPCVTACPVNALTFQSD-----SVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred cCCCCcCcC----ChhHHhhCCcCceecccc-----ceecChhhCcchhhHhhhcCCCCEEcc
Confidence 578999996 358999999999987544 688999999999999999999999764
No 153
>PRK13984 putative oxidoreductase; Provisional
Probab=97.61 E-value=2.7e-05 Score=84.95 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=47.5
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCC-----CC--ceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDE-----KN--QLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~-----~~--~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.|.+.|+.| +.|+.+||.+++.+.+.. .+ ..+..+|...|..|+.|..+||++||+|+
T Consensus 42 ~d~~~Ci~C------~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 42 NDWEKCIGC------GTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cChhhCcCc------cchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEec
Confidence 489999999 789999999998765421 01 12468899999999999999999999985
No 154
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.61 E-value=3e-05 Score=89.89 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=46.6
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEec---CC------------------CC-ceeEEEecCCCccCCccccc
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVP---DE------------------KN-QLKLQINAQNCLHCKACDIK 420 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~---~~------------------~~-~~~~~i~~~~Ci~Cg~C~~~ 420 (442)
.-+.|++.|+.| +.|+.+||.+++.... .+ .+ ..++.++.+.|+.||.|..+
T Consensus 677 ~p~~~~~~Ci~C------g~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~ 750 (1165)
T TIGR02176 677 VPVWVPDNCIQC------NQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDI 750 (1165)
T ss_pred cceeccccCCCc------cchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhh
Confidence 334578999999 7899999999987530 00 01 12478999999999999999
Q ss_pred CCCC--CeeEE
Q 013495 421 DPKQ--NIKWT 429 (442)
Q Consensus 421 cp~~--~I~w~ 429 (442)
||.+ ||.+.
T Consensus 751 CP~~~~Al~m~ 761 (1165)
T TIGR02176 751 CPAKEKALVMQ 761 (1165)
T ss_pred cCCCCcccccc
Confidence 9995 78765
No 155
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.60 E-value=6.5e-05 Score=71.19 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=46.2
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCC----CCceeEEEecCCCc-----cCCcccccCCC--CCeeEECc
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKACDIKDPK--QNIKWTVP 431 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~----~~~~~~~i~~~~Ci-----~Cg~C~~~cp~--~~I~w~~p 431 (442)
+...|..|. +.+|+.+||.++++....+ +....+.||.++|+ .|+.|..+||+ +||++...
T Consensus 89 ~~~~C~~C~----d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~ 160 (213)
T TIGR00397 89 REVPCRMCK----DIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPI 160 (213)
T ss_pred cCCcCCCCC----CchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEecc
Confidence 456798884 2389999999998753211 11224679999999 99999999999 79988754
No 156
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=97.59 E-value=5.2e-05 Score=74.06 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
.+.|.+| +.|...||.++++++++ ....+|.+.|..|+.|...||+++|+.+..++
T Consensus 168 ~~~C~~C------~~C~~~CP~~vi~~d~~----~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 168 DEDCDGC------GKCVEECPRGVLELEEG----KVVVEDLEDCSLCKLCERACDAGAIRVGWDED 223 (259)
T ss_pred hhhCCCh------HHHHHhCCccceEccCC----eeEEeChhhCcCchHHHHhCCCCcEEEEecCC
Confidence 3788887 68999999999998654 24567899999999999999999998775443
No 157
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.59 E-value=2.1e-05 Score=46.51 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=18.9
Q ss_pred eEEEecCCCccCCcccccCC
Q 013495 403 KLQINAQNCLHCKACDIKDP 422 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp 422 (442)
.+.||.++|++|++|.++||
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACP 21 (22)
T ss_pred ceEEccccccCchhHHHhhC
Confidence 58899999999999999998
No 158
>PRK09898 hypothetical protein; Provisional
Probab=97.59 E-value=3.5e-05 Score=72.75 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=44.8
Q ss_pred EecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 364 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 364 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.+.|.+.|+.| +.|..+||.+++.++.+ . .+...|..||.|..+||++||++..
T Consensus 149 v~vd~~~CigC------~~C~~aCP~~ai~~~~~-----~--~~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 149 ITVDHKRCIGC------SACTTACPWMMATVNTE-----S--KKSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred EEeccccCCCc------CcccccCCCCCCEecCC-----C--CcCCcCcChHHHHHhCCcccEEEec
Confidence 34588999998 68999999999887643 1 1578999999999999999998764
No 159
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.58 E-value=0.0061 Score=63.01 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=48.7
Q ss_pred EehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 10 KSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 10 v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
++-..+.+.|++.|++.|++|+++++|+++..++ +. +.|.+.+ .++. ++.+++|+.||.|.|+++.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~-~~v~~~~----~~~~------~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GG-VVLTVQP----SAEH------PSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CE-EEEEEEc----CCCC------ccceEecCEEEECCCcChH
Confidence 4556888899999999999999999999998765 33 3344332 0110 0247999999999999964
No 160
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=97.56 E-value=5.4e-05 Score=74.07 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=46.3
Q ss_pred CeEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
++.+ .+.|..| +.|...||.+++.++++ .....+...|..|+.|...||.+||+++.
T Consensus 164 ~I~i--~~~C~~C------~~C~~~CP~~vi~~~~~----~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~ 220 (263)
T PRK00783 164 RIEV--SEDCDEC------EKCVEACPRGVLELKEG----KLVVTDLLNCSLCKLCERACPGKAIRVSD 220 (263)
T ss_pred cccc--cccCCch------HHHHHhCCccccEecCC----eEEEeChhhCCCchHHHHhCCCCceEEEE
Confidence 3444 5788888 68999999999998654 13445888999999999999999998764
No 161
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.52 E-value=0.013 Score=63.33 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=59.7
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.++=.++...|++.|++.||+|+++++|+++..++ ++|++|++.+. .+| .+.+|+|+.||.|.|+++
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~---~~g-------~~~~i~A~~VVnAaG~wa-- 211 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDH---LTG-------ETQEIHAPVVVNAAGIWG-- 211 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEc---CCC-------cEEEEECCEEEECCChhH--
Confidence 57778899999999999999999999999998875 67888887431 112 135899999999999984
Q ss_pred cHHHHHhcCCc
Q 013495 89 SEKLIKNFKLR 99 (442)
Q Consensus 89 ar~l~~~~gl~ 99 (442)
.+|.+..+++
T Consensus 212 -~~l~~~~g~~ 221 (546)
T PRK11101 212 -QHIAEYADLR 221 (546)
T ss_pred -HHHHHhcCCC
Confidence 4454445544
No 162
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.00063 Score=64.04 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=67.8
Q ss_pred cccCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEecc
Q 013495 3 YCHNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 82 (442)
Q Consensus 3 ~~~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~Ad 82 (442)
+.+|-|+.+-..|..-|+.+|-++||+|+.++.|.+++..++.+|.||.++=.-+...|-. -.-..|+|++||+|+
T Consensus 99 ~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh----vDPl~i~a~~VvDaT 174 (262)
T COG1635 99 EEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH----VDPLTIRAKAVVDAT 174 (262)
T ss_pred cCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc----cCcceeeEEEEEeCC
Confidence 3567788999999999999999999999999999999988754899997753222222211 112589999999999
Q ss_pred CCCCcccHHH
Q 013495 83 GCRGSLSEKL 92 (442)
Q Consensus 83 G~~s~lar~l 92 (442)
|-.+.+.+.+
T Consensus 175 GHda~v~~~~ 184 (262)
T COG1635 175 GHDAEVVSFL 184 (262)
T ss_pred CCchHHHHHH
Confidence 9999987765
No 163
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.034 Score=59.44 Aligned_cols=66 Identities=21% Similarity=0.158 Sum_probs=52.7
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+++-.+|..+|++.|++.|++++..++|+++..++ + .++|++.+ ..|+ ..+++|++||.|+|+++.
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~----~~g~-------~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG-G-LWRVETRD----ADGE-------TRTVRARALVNAAGPWVT 216 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-C-EEEEEEEe----CCCC-------EEEEEecEEEECCCccHH
Confidence 46778999999999999999999999999998764 3 45676654 1121 357999999999999853
No 164
>PRK07233 hypothetical protein; Provisional
Probab=97.47 E-value=0.011 Score=61.04 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
..+-+.|++.+++.|++|+.+++|++|..++ +.++++... +.+++|+.||.|....
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~~~----------------~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVEVD----------------GEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEEeC----------------CceEECCEEEECCCHH
Confidence 3577888999999999999999999999876 455555432 3579999999999864
No 165
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.47 E-value=0.027 Score=61.88 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=55.2
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcC-CCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~-~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+++=..+...|++.|++.|++|+.++.|.++..++ +|.+++|++.+. .+| ...+++|+.||.|+|+++.
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg-------~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTG-------KEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCC-------cEEEEEeCEEEECCCHhHH
Confidence 45778999999999999999999999999998874 477888876431 112 1237899999999999954
No 166
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.45 E-value=6.4e-05 Score=72.29 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=41.1
Q ss_pred ecCCCCCcccCCCCCcccccccccc--ceEEEecCCCC-ceeEE-------EecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPA--RVYEYVPDEKN-QLKLQ-------INAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa--~~y~~~~~~~~-~~~~~-------i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..|++.|+.| +.|+++||. +...+.....+ ..++. ++...|++||.|..+||++||.+.
T Consensus 142 ~~d~~kCi~C------g~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 142 GIDHNRCVLC------TRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred EeehhhCcCc------cHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEec
Confidence 3489999999 799999994 33333221111 11222 245689999999999999999865
No 167
>PRK07118 ferredoxin; Validated
Probab=97.44 E-value=5.2e-05 Score=74.75 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=44.4
Q ss_pred CCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 369 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..|++| +.|..+||.+++.+.++ .+.+|.++|+.|+.|..+||.++|++.
T Consensus 139 ~~CigC------g~C~~aCp~~AI~~~~g-----~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 139 YGCLGL------GSCVAACPFDAIHIENG-----LPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred CCCcCh------hHHHHhCCccCeEccCC-----eEEEChhhCcChhHHHHhcCccceeee
Confidence 357777 78999999999988654 789999999999999999999999876
No 168
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.42 E-value=9.2e-05 Score=70.79 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=44.6
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC----------cccccCCCCCeeEECc
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK----------ACDIKDPKQNIKWTVP 431 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg----------~C~~~cp~~~I~w~~p 431 (442)
..|.+.|+.| +.|+.+||.+++.+.+. ..+.++|..|+ .|+.+||++||++...
T Consensus 121 ~id~~~C~~C------~~C~~aCP~~A~~~~~~-------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~ 184 (225)
T TIGR03149 121 DVHKDLCVGC------QYCIAACPYRVRFIHPV-------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDL 184 (225)
T ss_pred EechhhCCcc------hHHHHhCCCCCcEecCC-------CCccccCCCCCcchhhCCCCCcccccCccCCEEEecc
Confidence 3588999998 78999999999876543 12568999999 8999999999998643
No 169
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.41 E-value=2.4e-05 Score=59.91 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=38.0
Q ss_pred CcccCCCCCccccccccccceEEEecCC------------CCceeEEEecCCCc------cCCcccccCCCC
Q 013495 371 PELVNLPEYAGPESRYCPARVYEYVPDE------------KNQLKLQINAQNCL------HCKACDIKDPKQ 424 (442)
Q Consensus 371 c~~~~~~~~~~~c~~~CPa~~y~~~~~~------------~~~~~~~i~~~~Ci------~Cg~C~~~cp~~ 424 (442)
|..| +.|+.+||++||+...+. .+.+.+.++.++|. .||.|..+||+.
T Consensus 2 C~~C------~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 2 CITC------GKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred Ccch------hHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 6777 789999999999876210 13346788889998 999999999973
No 170
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.40 E-value=0.0023 Score=70.74 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=50.2
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.++-..|.+.|++.+++ |++++.++.|+++..++ +.+ .|.+.+ +..++|+.||.|+|+.+.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECC---------------CcEEECCEEEECCCCCcc
Confidence 46788999999999999 99999999999998776 433 366653 456789999999999864
No 171
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.39 E-value=5e-05 Score=78.40 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=45.6
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..|.++|.+| +.|.. ||-++++++ +..+|.-.|-.||+|..+||.+||+..
T Consensus 557 ~vde~~C~gC------~~C~~-Cpf~ais~~-------ka~v~~~~C~gCG~C~~aCp~gai~~~ 607 (622)
T COG1148 557 TVDEDKCTGC------GICAE-CPFGAISVD-------KAEVNPLRCKGCGICSAACPSGAIDLA 607 (622)
T ss_pred ccchhhhcCC------cceee-CCCCceecc-------ccccChhhhCcccchhhhCCcccchhc
Confidence 3589999999 79999 999999875 378899999999999999999999865
No 172
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=97.37 E-value=6.1e-05 Score=76.45 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=43.5
Q ss_pred EecCCCCCcccCCCCCccccccccccceEEEecCCCCc-------eeEEEecCCCccCCcccccCCCCCe
Q 013495 364 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNI 426 (442)
Q Consensus 364 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~-------~~~~i~~~~Ci~Cg~C~~~cp~~~I 426 (442)
.+.|.+.|+.| +.|..+||.+++.+.++.... ....+|...|+.||.|..+||..++
T Consensus 7 ~vi~~~~C~gC------g~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 7 EVIEYDVCTAC------GACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cEECcccCcCh------HHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 35688999998 789999999999986542110 0113577899999999999998654
No 173
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.31 E-value=0.013 Score=61.58 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
..|-+.|.+..++.|++|+++++|++|..+++|.|++|++.+ .+|+ ...++.|+.||.|...+.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~------~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQ------RRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCC------ceeEEECCEEEEcCCHHH
Confidence 456788888888999999999999999877668888998853 1110 012789999999997753
No 174
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=97.29 E-value=9.5e-05 Score=61.32 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=37.1
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccC---------CcccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~C---------g~C~~~cp~~~I~w~ 429 (442)
+++.|+++|++| +.|+.+||-+++.++++.. -..+|-.| ..|+.+||++||++.
T Consensus 34 ~V~id~~~CigC------~~C~~aCP~~ai~~~~~~~-------~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g 96 (98)
T PF13247_consen 34 IVVIDEDKCIGC------GYCVEACPYGAIRFDPDTG-------KARKCDLCIDRIEEGEEPACVEACPTGALTFG 96 (98)
T ss_dssp -EEE-TTTCCTH------HHHHHH-TTS-EEEETTTT-------CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEE
T ss_pred eEEechhhccCc------hhhhhhhccCcceeecccc-------cCCcCceehhhhhcCCCChhHHhccccceEEe
Confidence 456699999999 7999999999999987621 24568888 799999999999874
No 175
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.29 E-value=0.0002 Score=79.01 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=49.4
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC------cccccCCCCCeeEECc
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK------ACDIKDPKQNIKWTVP 431 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg------~C~~~cp~~~I~w~~p 431 (442)
+.|.+.|+.| +.|+.+||.+++++.........+.++..+|..|+ .|+..||++||++..+
T Consensus 81 ~id~~~C~~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~ 147 (654)
T PRK12769 81 QVNQQKCIGC------KSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTE 147 (654)
T ss_pred EEecccccCc------ChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecH
Confidence 3478999998 68999999999998754222224577889999999 9999999999988643
No 176
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.27 E-value=8.1e-05 Score=73.68 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=45.4
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccC---------CcccccCCCCCeeE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KACDIKDPKQNIKW 428 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~C---------g~C~~~cp~~~I~w 428 (442)
+.+.|.+.|+.| +.|+.+||.+++.+... ..+.++|..| ..|+.+||++|+.+
T Consensus 156 iV~ID~ekCiGC------g~Cv~ACPygAi~~n~~-------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~f 217 (321)
T TIGR03478 156 IVLVDQERCKGY------RYCVEACPYKKVYFNPQ-------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFV 217 (321)
T ss_pred eEEECHHHCcch------HHHHHhCCCCCcEecCC-------CCchhhCCCchhhhccCCCCHHHhhcCcccEEE
Confidence 455689999998 78999999999998654 1367899999 89999999999876
No 177
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.27 E-value=0.00013 Score=67.35 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=46.3
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCC----Cc----eeEEEecCCCccCC------cccccCCCCCeeEECc
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK----NQ----LKLQINAQNCLHCK------ACDIKDPKQNIKWTVP 431 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~----~~----~~~~i~~~~Ci~Cg------~C~~~cp~~~I~w~~p 431 (442)
.|.+.|+.| +.|..+||.+++++..... +. ....++.+.|..|+ +|+.+||++||++..+
T Consensus 84 i~~~~C~~C------~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~ 157 (181)
T PRK10330 84 VMQERCIGC------KTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred eChhhCCCc------chhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCH
Confidence 478999998 6899999999998864210 00 01246778999999 9999999999987643
No 178
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.21 E-value=0.045 Score=55.70 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
++..++-.++.+.|.+.|++.|++++.+++|+++..++ +. +.|++.+ .+++|+.||+|.|..
T Consensus 138 ~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~-~~v~~~~----------------~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 138 NGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE-LL-VTVKTTK----------------GSYQANKLVVTAGAW 199 (380)
T ss_pred CCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-Ce-EEEEeCC----------------CEEEeCEEEEecCcc
Confidence 44567888999999999999999999999999998765 33 4576652 379999999999987
Q ss_pred C
Q 013495 86 G 86 (442)
Q Consensus 86 s 86 (442)
+
T Consensus 200 ~ 200 (380)
T TIGR01377 200 T 200 (380)
T ss_pred h
Confidence 4
No 179
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.20 E-value=0.015 Score=59.00 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=49.3
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.++-.++...|.+++++.|++++.+++|+++..++ + .+.|++.+ + +++|+.||.|+|..+.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~-~~~v~~~~---------------g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADG-D-GVTVTTAD---------------G-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-C-eEEEEeCC---------------C-EEEeeEEEEecCcchh
Confidence 35667788888899999999999999999998865 3 34577653 3 7999999999999743
No 180
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.19 E-value=0.071 Score=57.12 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=51.4
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+++-.+|...|++.|++.|++++.+++|+++..++ + .++|++.+. .+|+ ..+++|+.||.|+|+++.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARREN-G-LWHVTLEDT---ATGK-------RYTVRARALVNAAGPWVK 217 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-EEEEEEEEc---CCCC-------EEEEEcCEEEECCCccHH
Confidence 36677888899999999999999999999998764 3 356665430 1121 257999999999999853
No 181
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.18 E-value=0.00013 Score=70.54 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=45.0
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg---------~C~~~cp~~~I~w~ 429 (442)
+.+.|.+.|+.| +.|+.+||.+++.+.++ . .+.++|..|+ .|+.+||++||.+.
T Consensus 124 ~v~id~~~CigC------~~Cv~aCP~~Ai~~~~~-----~--~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g 186 (244)
T PRK14993 124 IVVVDNKRCVGC------AYCVQACPYDARFINHE-----T--QTADKCTFCVHRLEAGLLPACVESCVGGARIIG 186 (244)
T ss_pred CEEEcHHHCCCH------HHHHHhcCCCCCEEeCC-----C--CCcccCcCCcchhhCCCCcccchhcccCCEEEc
Confidence 445588999998 68999999999998764 1 2568999998 89999999999753
No 182
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.17 E-value=0.00013 Score=73.42 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=43.8
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCc-------------ccccCCCCCeeE
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKA-------------CDIKDPKQNIKW 428 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~-------------C~~~cp~~~I~w 428 (442)
+.|.+.|+.| +.|+.+||.+++.+..+ .......+|..|+. |+.+||++||.+
T Consensus 139 ~id~dkCigC------g~Cv~aCP~gai~~~~~-----~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~f 204 (328)
T PRK10882 139 HYDKDVCTGC------RYCMVACPFNVPKYDYN-----NPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIF 204 (328)
T ss_pred cCCHHHcCcc------cHHHHhCCccceecccc-----ccccceeecccccccchhhhhcCCCChhhhhccccceEe
Confidence 4588999998 68999999999987654 12234579999999 999999999976
No 183
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.16 E-value=0.014 Score=59.53 Aligned_cols=201 Identities=23% Similarity=0.214 Sum_probs=108.8
Q ss_pred EEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
-.++=..+.+.|++.++++| +.+...+.+..+..+ . .+++|.|.+ | +++|+.||.|.|..+
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~G~~~ 212 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAAGAWA 212 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcCchHH
Confidence 34566788999999999999 566668888888775 2 578888874 3 599999999999985
Q ss_pred cccHHHHHhcC-CcccccCCCce-EEEEEEEEEeeCCCCCCCCcEEEEecCCCCCCCCceEEEEEcCCCeEEEEEEEecC
Q 013495 87 SLSEKLIKNFK-LREKSHAQHQT-YALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 164 (442)
Q Consensus 87 ~lar~l~~~~g-l~~~~~~~~~~-~~~g~ke~~~~~~~~~~~g~~~~~~G~pl~~~~~Gggwiy~~~~~~vsVGlv~~~~ 164 (442)
. .+...++ +.. ...|.. +.+ ..+.++........... ......++|+.+..++.+.+|-.....
T Consensus 213 ~---~l~~~~~~~~~--~~~p~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~~~~g~~~~g~~~~~~ 278 (387)
T COG0665 213 G---ELAATLGELPL--PLRPVRGQAL----TTEPPEGLLADGLAPVV-----LVVDDGGGYIRPRGDGRLRVGGTDEEG 278 (387)
T ss_pred H---HHHHhcCCCcC--ccccccceEE----EecCCCccccccccceE-----EEecCCceEEEEcCCCcEEEeeccccc
Confidence 4 3322345 221 112211 111 11111111111100000 011335568888778888888876553
Q ss_pred C-CCCCCChH-----HHHHHHH-hCCCcccccCCCeEEeecceeeccCCCccCCccccCCEEEEccCCC-----cccCcc
Q 013495 165 Y-HNPFLNPY-----EEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAG-----FLNVPK 232 (442)
Q Consensus 165 ~-~~~~~~~~-----~~~~~~~-~~P~i~~~l~~~~~~~~ga~~i~~gg~~~~~~~~~~g~llvGDAAg-----~vdp~~ 232 (442)
. ......+. +.++... ..|.+....... .|. |+. +....++.-+||-+.. +..-..
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~---~w~-------g~~--~~t~pd~~P~iG~~~~~~~l~~a~G~~ 346 (387)
T COG0665 279 GDDPSDPEREDLVIAELLRVARALLPGLADAGIEA---AWA-------GLR--PPTTPDGLPVIGRAAPLPNLYVATGHG 346 (387)
T ss_pred CCCCccccCcchhHHHHHHHHHHhCccccccccce---eee-------ccc--cCCCCCCCceeCCCCCCCCEEEEecCC
Confidence 1 11111111 2333332 335443221111 111 111 1111455666663221 112366
Q ss_pred cccHHHHHHHHHHHHHHHHh
Q 013495 233 IKGTHTAMKSGMLAAEAGFG 252 (442)
Q Consensus 233 g~GI~~Am~SG~lAAeai~~ 252 (442)
+.|+.+|-..|+++|+.|..
T Consensus 347 ~~G~~~~p~~g~~lA~li~g 366 (387)
T COG0665 347 GHGFTLAPALGRLLADLILG 366 (387)
T ss_pred CcChhhccHHHHHHHHHHcC
Confidence 77999999999999998875
No 184
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.16 E-value=0.0003 Score=68.48 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=45.1
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCC----CCceeEEEecCCCc-----cCCcccccCCC--CCeeEEC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKACDIKDPK--QNIKWTV 430 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~----~~~~~~~i~~~~Ci-----~Cg~C~~~cp~--~~I~w~~ 430 (442)
...|..|. +.+|+.+||.+++++...+ .....+.||.++|+ .|+.|..+||+ +||++..
T Consensus 96 ~~~C~~C~----~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 96 DIPCEMCE----DIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred CCcCcCCC----CCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 35688884 2389999999999875421 11224559999999 89999999997 8999874
No 185
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.15 E-value=9.9e-05 Score=77.22 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+++..+..+|.+.+++.|++|+.++.|.+++.++ ++|++|++.+ +.| ..+|+||++|||+|- +.
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~----~~g--------~~~i~A~~~IDaTG~-g~ 150 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET----KSG--------RKEIRAKVFIDATGD-GD 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccc----ccc--------ccccccccccccccc-cc
Confidence 578889999999999999999999999999999986 7899999875 334 368999999999994 66
Q ss_pred ccHH
Q 013495 88 LSEK 91 (442)
Q Consensus 88 lar~ 91 (442)
|+..
T Consensus 151 l~~~ 154 (428)
T PF12831_consen 151 LAAL 154 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 6663
No 186
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.08 E-value=0.00027 Score=76.24 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=50.4
Q ss_pred CCCCCCeEecCCCCCcccCCCCCccccccccc----cceEEEecC-CCC----ceeEEEecCCCccCCcccccCCCCCee
Q 013495 357 HDQPAHLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPD-EKN----QLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 357 ~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~-~~~----~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.|+-..+.+-|++.|+-| +.|+++|- +.++.++.. ++. ..-.-||.+-|+.||.|+.+||..|+.
T Consensus 137 ~Des~Pfy~ydp~qCIlC------gRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 137 KDESNPFYIYDPNQCILC------GRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred cccCCCeEEecchheeeh------hHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 344444667799999999 79999996 334444432 111 012447889999999999999999975
Q ss_pred EECcCCCCC
Q 013495 428 WTVPEGGGG 436 (442)
Q Consensus 428 w~~p~gg~G 436 (442)
=..-.|.-|
T Consensus 211 ek~m~g~ag 219 (978)
T COG3383 211 EKSMLGEAG 219 (978)
T ss_pred hhhhhcccc
Confidence 444455444
No 187
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.07 E-value=0.00023 Score=73.57 Aligned_cols=42 Identities=24% Similarity=0.567 Sum_probs=36.6
Q ss_pred cccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
+.|+..||++|++++++ +++.||.++|+.|+.|+-+||. |++
T Consensus 248 ~~~v~~Cp~~ai~~~~~----~~~~id~~~C~~Cm~Ci~~~p~-a~~ 289 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGS----KELSIDNRECVRCMHCINKMPK-ALH 289 (402)
T ss_pred hhHhhcCCccccccCCC----ceEEEcchhcCcCccccccCcc-ccc
Confidence 56899999999999653 2799999999999999999997 754
No 188
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.07 E-value=0.00021 Score=79.88 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=39.9
Q ss_pred eEecCCCCCcccCCCCCcccccccccc----ceEEEecCCCCce----------------------eEEE-----ecCCC
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPA----RVYEYVPDEKNQL----------------------KLQI-----NAQNC 411 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa----~~y~~~~~~~~~~----------------------~~~i-----~~~~C 411 (442)
.+..|++.|+.| +.|+|+||. +++.+... |.. +..| +...|
T Consensus 135 ~I~~D~~rCI~C------~RCVr~C~ev~g~~al~~~~R--G~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C 206 (819)
T PRK08493 135 KINYDPSLCIVC------ERCVTVCKDKIGESALKTVPR--GLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDC 206 (819)
T ss_pred cEEechhhcccc------cHHHhhCcccccchhhhhccC--CcccccccccccccccchhhhhhcccceecccCCCcccc
Confidence 345699999999 689999994 33333211 100 0111 24789
Q ss_pred ccCCcccccCCCCCeeE
Q 013495 412 LHCKACDIKDPKQNIKW 428 (442)
Q Consensus 412 i~Cg~C~~~cp~~~I~w 428 (442)
+.||.|+.+||++||.-
T Consensus 207 ~~CG~Cv~VCPvGAL~~ 223 (819)
T PRK08493 207 SFCGECIAVCPVGALSS 223 (819)
T ss_pred cccCcHHHhCCCCcccc
Confidence 99999999999999854
No 189
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.07 E-value=0.00028 Score=63.81 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=44.6
Q ss_pred EecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeEEC
Q 013495 364 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWTV 430 (442)
Q Consensus 364 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg---------~C~~~cp~~~I~w~~ 430 (442)
...|.+.|..| +.|..+||.+++.+... .+ ..++|..|+ .|+.+||++||+|..
T Consensus 90 ~~i~~~~C~~C------~~C~~aCP~~ai~~~~~-~~------~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~ 152 (161)
T TIGR02951 90 VLVDQDKCIGC------RYCVWACPYGAPQYDPQ-QG------VMGKCDGCYDRVEKGLRPACVDACPMRALDFGP 152 (161)
T ss_pred EEECHHhCCCc------hHHHhhCCCCCcEEcCC-CC------ccccCCCCHHHHHCCCCCcchhhccccceEEec
Confidence 34478999998 68999999999988654 11 357999998 999999999999874
No 190
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.06 E-value=0.015 Score=58.95 Aligned_cols=64 Identities=25% Similarity=0.207 Sum_probs=48.9
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.+++.+....+...+...++..|.+|+.+++|++|..++ +.| .|.+.+ +.+++||.||.|...
T Consensus 201 ~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~---------------g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 201 FGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTTED---------------GETIEADAVISAVPP 263 (450)
T ss_dssp SSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETT---------------SSEEEESEEEE-S-H
T ss_pred ccceeecccchhHHHHHHHhhcCceeecCCcceeccccc-ccc-cccccc---------------ceEEecceeeecCch
Confidence 345666677777888888888899999999999999987 444 566654 358999999998876
Q ss_pred C
Q 013495 85 R 85 (442)
Q Consensus 85 ~ 85 (442)
.
T Consensus 264 ~ 264 (450)
T PF01593_consen 264 S 264 (450)
T ss_dssp H
T ss_pred h
Confidence 4
No 191
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.05 E-value=0.04 Score=58.48 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcC--CC--cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~--~g--~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.|.+-|.+..++.|++|+.+++|++|..++ ++ .|++|++.+ |+ .+.++.||.||.|....
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~------g~------~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK------PE------GKKVIKADAYVAACDVP 283 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec------CC------cceEEECCEEEECCChH
Confidence 366777888888999999999999999864 23 377777742 10 12468999999999976
No 192
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.99 E-value=0.003 Score=65.02 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=51.4
Q ss_pred EEEehHHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 8 NRKSLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
++++|..|.+++.+.+++ .+++|+. ..|++|+.++ ++|+||++.+ |.++.|+.||+|+|.
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~-~~v~GV~~~~---------------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVEN-GKVKGVVTKD---------------GEEIEADAVVLATGT 150 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECT-TEEEEEEETT---------------SEEEEECEEEE-TTT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecC-CeEEEEEeCC---------------CCEEecCEEEEeccc
Confidence 589999999999999998 6789875 5899999887 8999999975 679999999999999
No 193
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.94 E-value=0.00026 Score=69.81 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=43.5
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeEE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWT 429 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg---------~C~~~cp~~~I~w~ 429 (442)
+.+.|.+.|+.| +.|+.+||.+++++.+. ++ ....|..|. +|+.+||++||+|.
T Consensus 118 ~V~id~dkCigC------~~Cv~aCP~~a~~~~~~-~~------~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg 180 (283)
T TIGR01582 118 IVDFDHSKCIGC------GYCIVGCPFNIPRYDKV-DN------RPYKCTLCIDRVSVGQEPACVKTCPTNAISFG 180 (283)
T ss_pred cEEEeHHHCCcc------hHHHhhCCCCCcEEcCC-CC------ChhhhcccccccccCCCChHhCcccHhhEEEC
Confidence 344588999999 68999999999998654 11 245888884 99999999999874
No 194
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.91 E-value=0.00037 Score=75.95 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=40.3
Q ss_pred CeEecCCCCCcccCCCCCcccccc--ccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCe
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNI 426 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I 426 (442)
.+.+ |++.|+.| +.|.. .||+.. ..++ +..+|. .|+.||.|..+||.+||
T Consensus 544 ~~~i-d~~~C~~C------~~C~~~~~CP~~~--~~~~-----~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 544 PYKV-DQDKCIGC------KKCIKELGCPAIE--PEDK-----EAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred eEEE-cCCcCCCc------cccccccCCCCcc--ccCC-----cceeCC-CCcCHHHHHhhCccccC
Confidence 4544 78999999 68999 999754 2222 688888 79999999999999886
No 195
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=96.90 E-value=0.00016 Score=65.49 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=56.1
Q ss_pred CccccCCCCCCeEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 352 NTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 352 ~~~~~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
...|.+.|+.-+-+.|.+.|++| ..|..+||+.++--..+ . -..+..+-|..|+.|+..||++.|+...
T Consensus 98 ~~~~~~~~~~~va~i~e~~ciGC------tkCiqaCpvdAivg~~~--~--mhtv~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 98 GSEHGEEQARMVALIDEANCIGC------TKCIQACPVDAIVGATK--A--MHTVIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred hhhhhccccceeeEecchhcccc------HHHHHhCChhhhhccch--h--HHHHHHHHhcCCCcccCCCCCCceeeee
Confidence 34566778888888999999999 46999999999765433 1 3456788999999999999999998653
No 196
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.90 E-value=0.00054 Score=63.98 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=45.5
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccC------C---cccccCCCCCeeE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC------K---ACDIKDPKQNIKW 428 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~C------g---~C~~~cp~~~I~w 428 (442)
|++.|.++|++| +-|..+||-+|-.++++ ++ . .++|..| | .|+..||++|+.|
T Consensus 94 iV~vd~d~CIGC------~yCi~ACPyga~~~~~~-~~---~---~~KCt~C~~ri~~g~~PaCV~~CP~~A~~f 155 (203)
T COG0437 94 IVLVDKDLCIGC------GYCIAACPYGAPQFNPD-KG---V---VDKCTFCVDRVAVGKLPACVEACPTGALIF 155 (203)
T ss_pred EEEecCCcccCc------hHHHhhCCCCCceeCcc-cC---c---ccccCcchhhHhcCCCCcccccCCcccccc
Confidence 666799999999 78999999999998875 12 1 7799999 8 9999999999874
No 197
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.88 E-value=0.02 Score=59.76 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=63.6
Q ss_pred cccCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceE-EEEcEEEec
Q 013495 3 YCHNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVE-LRGRITLLA 81 (442)
Q Consensus 3 ~~~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~-i~Ak~vI~A 81 (442)
+.+.+.+|+=..+.+.|++.|++.|++|+.++.|+++..++|| +.-+.+.+ |.+ ++||+||.|
T Consensus 143 ~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~ 206 (429)
T COG0579 143 LVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINA 206 (429)
T ss_pred EcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEEC
Confidence 4567789999999999999999999999999999999998876 44455543 233 999999999
Q ss_pred cCCCCcccHHHHHhcCCc
Q 013495 82 EGCRGSLSEKLIKNFKLR 99 (442)
Q Consensus 82 dG~~s~lar~l~~~~gl~ 99 (442)
.|-.| -.|.++.|+.
T Consensus 207 AGl~A---d~la~~~g~~ 221 (429)
T COG0579 207 AGLYA---DPLAQMAGIP 221 (429)
T ss_pred CchhH---HHHHHHhCCC
Confidence 99884 4555567876
No 198
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.87 E-value=0.096 Score=56.01 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=61.2
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.++=.+|.-.++..|.+.|++++..++|+++++++ | |+||++.|. ..|+ ..+|+|+.||-|+|++
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~---~tg~-------~~~ira~~VVNAaGpW-- 224 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDR---ETGE-------TYEIRARAVVNAAGPW-- 224 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEec---CCCc-------EEEEEcCEEEECCCcc--
Confidence 356667788889999999999999999999999987 5 999998861 2232 4789999999999999
Q ss_pred ccHHHHHhcCCc
Q 013495 88 LSEKLIKNFKLR 99 (442)
Q Consensus 88 lar~l~~~~gl~ 99 (442)
+.++++..++.
T Consensus 225 -~d~i~~~~~~~ 235 (532)
T COG0578 225 -VDEILEMAGLE 235 (532)
T ss_pred -HHHHHHhhccc
Confidence 45555445444
No 199
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.86 E-value=0.045 Score=56.14 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.+.+.|++..++.|++|+.+++|++|..++++ |..+.+.+ +.++.||.||.|.-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~---------------g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSG---------------GETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecC---------------CccccCCEEEEcCCHH
Confidence 34555777888899999999999999988744 32222221 3468899999986543
No 200
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.82 E-value=0.0033 Score=65.06 Aligned_cols=66 Identities=26% Similarity=0.400 Sum_probs=51.6
Q ss_pred ehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 11 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.-..+-+.|.+.++++|++|+.+++|++++.++ ++|+||...+. .+|+ ..+|+|+.||+|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~~---~~g~-------~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-GRVTGVVAENP---ADGE-------FVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TEEEEEEEEET---TTCE-------EEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-CceeEEEEEEC---CCCe-------EEEEeeeEEEeccCcccc
Confidence 345788899999999999999999999999986 79999998731 2342 358999999999999986
No 201
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.82 E-value=0.036 Score=57.03 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=57.6
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.+.-+++-..+.+.|.+.+++.|++++.+++|.++..++ +. +.|++.+ + +++|+.||.|+|.
T Consensus 141 p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~-~~V~~~~---------------g-~i~ad~vV~A~G~ 202 (393)
T PRK11728 141 PSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NG-VVVRTTQ---------------G-EYEARTLINCAGL 202 (393)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-Ce-EEEEECC---------------C-EEEeCEEEECCCc
Confidence 344577889999999999999999999999999998765 33 3576653 3 7999999999999
Q ss_pred CCcccHHHHHhcCCc
Q 013495 85 RGSLSEKLIKNFKLR 99 (442)
Q Consensus 85 ~s~lar~l~~~~gl~ 99 (442)
++. .+.+.+|+.
T Consensus 203 ~s~---~l~~~~g~~ 214 (393)
T PRK11728 203 MSD---RLAKMAGLE 214 (393)
T ss_pred chH---HHHHHhCCC
Confidence 863 233345654
No 202
>PLN02487 zeta-carotene desaturase
Probab=96.78 E-value=0.13 Score=56.01 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcC--CC--cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~--~g--~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
|-.-+++..++.|++|+.+++|.+|..+. +| +|+||++.+ ++ .+.++.||.||.|.+..
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~-------~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----AT-------EKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CC-------CceEEECCEEEECCCHH
Confidence 44556677789999999999999999874 33 478888731 11 13578999999999987
No 203
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.78 E-value=0.0044 Score=64.84 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHH
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 92 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l 92 (442)
..|.+.|.+++++.|++|+.+++|++++.+++|+|+||++.+ .+|+ ...+.||.||+|+|..+.- +.+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~----~~g~-------~~~~~a~~VVlAtGg~~~n-~~m 197 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG----KGKG-------IYIKAAKAVVLATGGFGSN-KEM 197 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe----CCCe-------EEEEecceEEEecCCCCCC-HHH
Confidence 468889999999999999999999999997668899988753 2221 1358899999999998873 444
Q ss_pred HHhc
Q 013495 93 IKNF 96 (442)
Q Consensus 93 ~~~~ 96 (442)
++++
T Consensus 198 ~~~~ 201 (439)
T TIGR01813 198 IAKY 201 (439)
T ss_pred HHHh
Confidence 4433
No 204
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.77 E-value=0.00051 Score=73.19 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=41.8
Q ss_pred cCCCCCcccCCCCCccccc--cccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 366 RDPKIPELVNLPEYAGPES--RYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~--~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.|+++|+.| +.|. .-||+ +++.++ .++..||..-|+.||.|...||+.+|.
T Consensus 574 Vd~~~CtGC------~~C~~~~~Cps--i~~~~~---~~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 574 VDEEKCTGC------GDCIVLSGCPS--IEPDPT---FKKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred echhhcCCc------HHHHhhcCCce--EeecCC---CCceeecccccccchhhhhcCchhhee
Confidence 378999999 7896 47998 444443 138999999999999999999999986
No 205
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.74 E-value=0.0072 Score=63.17 Aligned_cols=63 Identities=32% Similarity=0.279 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcC-CCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccH
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 90 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~-~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar 90 (442)
.+.+.|.++|++.|++|+.+++|++++.++ +++|+||.+.+ .+.+++||.||+|+|..+....
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHH
Confidence 578899999999999999999999999873 47899987642 1358999999999998776533
No 206
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=96.73 E-value=0.00083 Score=67.33 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=36.6
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCC---------------CCceeEEEecCCC-----c-----cCCcccccCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDE---------------KNQLKLQINAQNC-----L-----HCKACDIKDP 422 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~---------------~~~~~~~i~~~~C-----i-----~Cg~C~~~cp 422 (442)
.+.|..| +.|++.||++++...++. .+..+..++...| . .|+.|..+||
T Consensus 204 ~~fC~~C------~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CP 277 (314)
T TIGR02486 204 AKFCETC------GKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCP 277 (314)
T ss_pred cccCcch------hHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECC
Confidence 4689888 789999999999865331 0112344555555 5 5999999999
Q ss_pred CC
Q 013495 423 KQ 424 (442)
Q Consensus 423 ~~ 424 (442)
+.
T Consensus 278 f~ 279 (314)
T TIGR02486 278 FN 279 (314)
T ss_pred CC
Confidence 86
No 207
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.68 E-value=0.0072 Score=55.74 Aligned_cols=62 Identities=26% Similarity=0.313 Sum_probs=47.5
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
..++.++.++|.+.|++.|.+++.+++|.++.+++++ +.|++.+ +.+++|+.||+|+|..+.
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~---------------~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD---------------GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------S-EEEEEEEEE---SSCS
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------cceeeeeeEEEeeeccCC
Confidence 3788899999999999999999999999999999866 4576664 368999999999997544
No 208
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.63 E-value=0.00088 Score=69.91 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 423 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~ 423 (442)
.+.|++| +.|+.+||.++ .+.++ ....|+.|+.|..+||.
T Consensus 230 ~~~Ci~C------~~Cv~vCP~gi-~~~~~---------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDC------NLCVQVCPTGI-DIRDG---------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCCh------hhhHHhCCCCC-EeCCC---------CchhChhhhHHHHhCCC
Confidence 5789998 68999999994 43322 23589999999999994
No 209
>PRK12839 hypothetical protein; Provisional
Probab=96.63 E-value=0.0087 Score=65.03 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=54.1
Q ss_pred EEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEE-cEEEeccCCCCc
Q 013495 9 RKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGS 87 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~A-k~vI~AdG~~s~ 87 (442)
.++-..|...|+++|++.|++|+.+++|++++.+++|+|+||...+ ++| ..++.+ |.||+|+|..+.
T Consensus 210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g--------~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDG--------AVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCC--------cEEEEeCCEEEEcCCCccc
Confidence 3455678889999999999999999999999987668999998653 233 234555 899999998876
Q ss_pred c
Q 013495 88 L 88 (442)
Q Consensus 88 l 88 (442)
-
T Consensus 278 n 278 (572)
T PRK12839 278 D 278 (572)
T ss_pred C
Confidence 3
No 210
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.60 E-value=0.01 Score=62.58 Aligned_cols=66 Identities=29% Similarity=0.352 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccH
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 90 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar 90 (442)
..+.+.|.+++++.|++|+.+++|++++.++ ++|+||.+.+ .+|+ ..+++||.||+|+|..+.-..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~ 196 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDD-GRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNRE 196 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHH
Confidence 4678899999999999999999999999865 8899998742 2332 357999999999998776533
No 211
>PRK07121 hypothetical protein; Validated
Probab=96.59 E-value=0.0081 Score=63.96 Aligned_cols=63 Identities=29% Similarity=0.420 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEE-cEEEeccCCCCc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGS 87 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~A-k~vI~AdG~~s~ 87 (442)
..+.+.|.+++++.|++|+.+++|++++.+++|+|+||++.+ +|+ ..+++| |.||+|+|..+.
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGE-------TVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCc-------EEEEEeCCEEEECCCCcCc
Confidence 358889999999999999999999999988668999998753 221 257999 999999998776
No 212
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.58 E-value=0.0012 Score=60.90 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=41.3
Q ss_pred cccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECc
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 431 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p 431 (442)
|+.+.-+|...+++.+.-.| ++.+|.++|+.|+.|..+||+++|.....
T Consensus 12 g~~T~~yP~~~~~~~~~~rg--~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 12 GTATSSYPLEPIAVDKNFRG--KPEYNPQQCIGCAACVNACPSNALTVETD 60 (180)
T ss_pred CCccccCCCCCCCCCCCCCC--ceEEChhhCcChhHHHHhcCccCeEeecc
Confidence 78999999988877554234 79999999999999999999999987643
No 213
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.58 E-value=0.0015 Score=63.60 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=35.1
Q ss_pred cccccccccceEEEecCCCCceeEEEe-cCCCccCCcccccCCCCCeeE
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQIN-AQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~-~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
.-|..+||.|++...-......++..+ .++|.+|+.|..+||.+++..
T Consensus 172 ~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~vl~ 220 (255)
T TIGR02163 172 GWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQVLR 220 (255)
T ss_pred chhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCceee
Confidence 579999999987432221122356665 899999999999999987543
No 214
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.007 Score=65.73 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+-+.|.+++++.|++|+.++.+++++.+++|+|+||...+. ++|+ -..|+||.||+|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICI---ETGE-------TVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEc---CCCc-------EEEEecCeEEECCCCcccc
Confidence 3678899999999999999999999999876699999986421 2442 2579999999999998865
No 215
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.54 E-value=0.0013 Score=36.58 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=13.9
Q ss_pred cCCCccCCcccccCCCC
Q 013495 408 AQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~~ 424 (442)
+++|++|+.|..+||.+
T Consensus 1 ~~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 1 QERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp -CCCTTSSSSTTTSTT-
T ss_pred CCcCCCCchHHhhccCC
Confidence 36899999999999974
No 216
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.54 E-value=0.013 Score=62.57 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred EEEehHHHHHHHHHHHHH----CC--cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEec
Q 013495 8 NRKSLSQLVRWLGGKAEE----LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLA 81 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~----~G--vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~A 81 (442)
-.++-..+.+.|++.|++ .| ++|+++++|+++..++ +.++.|.|.+ | +++|++||.|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~---------------G-~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR---------------G-EIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC---------------C-EEEeCEEEEC
Confidence 478888999999999999 88 8899999999998875 4467787763 3 7999999999
Q ss_pred cCCCCcccHHHHHhcCCc
Q 013495 82 EGCRGSLSEKLIKNFKLR 99 (442)
Q Consensus 82 dG~~s~lar~l~~~~gl~ 99 (442)
.|.+|. .|.+++|+.
T Consensus 269 AG~~S~---~La~~~Gi~ 283 (497)
T PTZ00383 269 ACGYSL---LFAQKMGYG 283 (497)
T ss_pred cChhHH---HHHHHhCCC
Confidence 999854 333345664
No 217
>PRK08275 putative oxidoreductase; Provisional
Probab=96.53 E-value=0.0084 Score=64.89 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+++++.|++|+.++.|++++.+++|+|+||.+.+. .+|+ -..++||.||+|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDC---RTGE-------FLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCc-------EEEEECCEEEECCCCcccc
Confidence 578999999999999999999999999875588999975421 2332 2478999999999998765
No 218
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=96.52 E-value=0.0016 Score=61.67 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=63.3
Q ss_pred ccchhhhcCCCCCCCCCCCCcCcCcccceeecCccccCCCCCCeEecCCCCCcccCCCCCccccccccccceEEEecCCC
Q 013495 320 EATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK 399 (442)
Q Consensus 320 ~~~~~~~~~~~i~y~~pdg~l~fd~~~~~~~~~~~~~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~ 399 (442)
.+..|+.++.+.||.-|..+++.|.+.++..+-.+.++.+ +.+...|..|.++.. =...|-.. .+
T Consensus 118 ~~v~Pl~evI~VD~~IpGCPP~~e~I~~al~all~ge~p~-----l~~~~lc~~c~~~~~---~s~~~~~d-----~~-- 182 (247)
T COG1941 118 ESVVPLGEVIDVDYAIPGCPPSPEEIARALTALLEGEEPE-----LSGRPLCPECPLAKL---TSEKCRCD-----LD-- 182 (247)
T ss_pred cceEEchheeeeeeecCCCCcCHHHHHHHHHHHHcCCCcc-----cCCCccchhcccccc---cccccCCC-----cc--
Confidence 6679999999999999999999998888777666555543 345556655554320 00111000 01
Q ss_pred CceeEEEecC-CCccCCcccccCCCCCeeEECcCC
Q 013495 400 NQLKLQINAQ-NCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 400 ~~~~~~i~~~-~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
.-.++.. -|+.|+||..+||..+|.-.-|+|
T Consensus 183 ---~~ll~qg~~C~G~~TC~A~CP~~ai~c~Gc~g 214 (247)
T COG1941 183 ---CCLLEQGLPCMGCGTCAASCPSRAIPCRGCRG 214 (247)
T ss_pred ---ceeecCCCcccCchhhhccCCccCCcccCCcC
Confidence 3445554 788888888888888887665554
No 219
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.48 E-value=0.0078 Score=66.00 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.++|++.||+|+.++.|++++.+++|+|+||...+. ++|+ -..++||.||+|+|-.+.+
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSM---EDGS-------IHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEEC---CCCe-------EEEEECCcEEEeCCCCccc
Confidence 788999999999999999999999999855689999976321 2342 2578999999999987654
No 220
>PLN02661 Putative thiazole synthesis
Probab=96.46 E-value=0.014 Score=59.27 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCEEEeh--HHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEecc
Q 013495 6 NGNRKSL--SQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 82 (442)
Q Consensus 6 ~~y~v~R--~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~Ad 82 (442)
++|.+.+ ..+-+.|.+++.+ .|++++.++.|.+++.++ +++.||.+...-+..++....-.++ ..|+||+||+|+
T Consensus 163 dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp-~~I~AkaVVlAT 240 (357)
T PLN02661 163 ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDP-NVMEAKVVVSSC 240 (357)
T ss_pred CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccce-eEEECCEEEEcC
Confidence 3454442 3555678877765 799999999999999876 7899998753322122211000111 479999999999
Q ss_pred CCCCcccHH
Q 013495 83 GCRGSLSEK 91 (442)
Q Consensus 83 G~~s~lar~ 91 (442)
|..+++...
T Consensus 241 Gh~g~~ga~ 249 (357)
T PLN02661 241 GHDGPFGAT 249 (357)
T ss_pred CCCCcchhh
Confidence 998887664
No 221
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.46 E-value=0.0088 Score=65.25 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.|.+.|.+++++.|++++.++.|++++.+++|+|+||.+.+. ++|+ -..++||.||+|+|..+.+
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGD-------VYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCe-------EEEEECCeEEECCCCcccc
Confidence 588999999999999999999999999876689999986431 2232 2478999999999998765
No 222
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.44 E-value=0.012 Score=64.14 Aligned_cols=64 Identities=31% Similarity=0.342 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEE-cEEEeccCCCCcc
Q 013495 12 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSL 88 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~A-k~vI~AdG~~s~l 88 (442)
=..|.+.|.+.|++.||+|+.+++|++++.++ |+|+||++.+ .++ ..+++| |.||+|+|..+.-
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~----~~~--------~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVET----PGG--------LQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEE----CCc--------EEEEEeCCEEEEcCCCcccC
Confidence 34577899999999999999999999999874 8899997753 111 247899 9999999998763
No 223
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.43 E-value=0.0015 Score=71.81 Aligned_cols=52 Identities=27% Similarity=0.255 Sum_probs=42.3
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC-------cccccCCCCCeeEECc
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK-------ACDIKDPKQNIKWTVP 431 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg-------~C~~~cp~~~I~w~~p 431 (442)
..|.+.|+.| +.|..+||.+++++.++ ..++|..|+ .|..+||++||++...
T Consensus 81 ~~d~~~C~gC------~~C~~~CP~~ai~~~~~---------~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~ 139 (639)
T PRK12809 81 QLDEQKCIGC------KRCAIACPFGVVEMVDT---------IAQKCDLCNQRSSGTQACIEVCPTQALRLMDD 139 (639)
T ss_pred ecChhhCcch------hhHhhhcCCCCEEccCC---------CcccccCCcccCCCCChhhhhCccceEEEech
Confidence 4578999998 68999999999987653 145777776 6999999999998643
No 224
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.41 E-value=0.022 Score=60.59 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=59.4
Q ss_pred ccCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 4 CHNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 4 ~~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
.....+|+-..+.+.|++.|++.|++|+.+++|+++..++++. +.|.+.+. .+| .+.+++|++||.|.|
T Consensus 169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~-v~v~~~~~---~~g-------~~~~i~A~~VV~AAG 237 (483)
T TIGR01320 169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGS-WTVTVKNT---RTG-------GKRTLNTRFVFVGAG 237 (483)
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCe-EEEEEeec---cCC-------ceEEEECCEEEECCC
Confidence 3455689999999999999999999999999999998865443 23443210 112 124799999999999
Q ss_pred CCCcccHHHHHhcCCc
Q 013495 84 CRGSLSEKLIKNFKLR 99 (442)
Q Consensus 84 ~~s~lar~l~~~~gl~ 99 (442)
.+|. .|.+.+|+.
T Consensus 238 ~~s~---~La~~~Gi~ 250 (483)
T TIGR01320 238 GGAL---PLLQKSGIP 250 (483)
T ss_pred cchH---HHHHHcCCC
Confidence 8854 344456765
No 225
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=96.39 E-value=0.00092 Score=73.68 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCCCCcccCCCCCccccccccccceEEEe-----cCCCCceeEEEecCCCccCCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~-----~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
+...|+.| +.|..+||.+.+-.. ...+-.....++...|++||.|..+||.+
T Consensus 368 ~e~~CI~C------G~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRC------GACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCCc------ccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC
Confidence 46789998 799999999987321 00000012245677899999999999976
No 226
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.37 E-value=0.0017 Score=66.62 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=42.1
Q ss_pred CCeEecCCCCCc--ccCCCCCccccccccccc-----eEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 361 AHLRLRDPKIPE--LVNLPEYAGPESRYCPAR-----VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 361 ~Hl~v~d~~~c~--~~~~~~~~~~c~~~CPa~-----~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
..|-|...+.|. .|. .-|.+.||+. |+++..+ ..|..+-|+.||.|+.+||+.||.
T Consensus 6 triaiv~~d~ckpk~c~-----~eck~~cpv~~~gk~ci~V~~~------~~ise~lCigcgicvkkcpf~ai~ 68 (592)
T KOG0063|consen 6 TRIAIVSEDKCKPKKCR-----QECKKSCPVVRTGKLCIEVTPT------AFISEELCIGCGICVKKCPFEAIQ 68 (592)
T ss_pred ceEEEeeccccCchHHH-----HHHHhcCCcccccceEEEEcCc------chhhHhhhccccceeeccCcceEE
Confidence 335555556654 453 5799999963 6666543 778899999999999999999986
No 227
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.35 E-value=0.00082 Score=66.07 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=34.8
Q ss_pred cccccccccceEEEecCCCCceeEE-EecCCCccCCcccccCCCCCee
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQ-INAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~-i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
..|...||.|++.-.-......++. +|.++|++|+.|..+||.+++.
T Consensus 179 ~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 179 GWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred chhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 5799999999764221111223566 8999999999999999988753
No 228
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.33 E-value=0.012 Score=64.16 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-..|.+++++.|++|+.++.|++++.+++|+|+||...+. .+|+ -..++||.||+|+|..+.+
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGE-------VVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCc-------EEEEEcCeEEECCCCcccc
Confidence 577889999999999999999999999876689999986421 2342 2578999999999998765
No 229
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.33 E-value=0.0013 Score=68.14 Aligned_cols=57 Identities=21% Similarity=0.447 Sum_probs=42.4
Q ss_pred cCCCCCcccCCCCCccccccccccceEE-EecCCC------------CceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYE-YVPDEK------------NQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~-~~~~~~------------~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.| ++|+.| +.|..+||..+-. ++.+-. -.....||..-|++|+.|..+||..+|.|+
T Consensus 222 Vd-d~CtgC------g~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~ 291 (622)
T COG1148 222 VD-DKCTGC------GACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLN 291 (622)
T ss_pred cc-cccccc------ccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccC
Confidence 35 899999 7999999996421 111100 012456899999999999999999999986
No 230
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.32 E-value=0.011 Score=64.49 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+++++.|++|+.++.|++++.+++|+|+||...+. ++|+ -..|.||.||+|+|..+.+
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNL---DDGT-------LHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEEC---CCCc-------EEEEEcCEEEECCCCCccc
Confidence 578899999999999999999999999876688999976321 2332 2589999999999998754
No 231
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.30 E-value=0.011 Score=64.90 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+.+.|.++|++.|++|+.++.+++++.+++|+|+||...+. ++|+ -..|+||.||+|+|-.+.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNM---EDGT-------LHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEc---CCCe-------EEEEEcCeEEECCCCCccc
Confidence 3578899999999999999999999999875689999976431 2342 2578999999999998754
No 232
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.29 E-value=0.013 Score=63.55 Aligned_cols=64 Identities=28% Similarity=0.448 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+++++.|++|+.++.|++++.++ |+|+||...+. .+|+ ...++||.||+|+|..+.+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDL---KTGE-------IVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEEC---CCCc-------EEEEECCeEEECCCcccCC
Confidence 567889999999999999999999999875 88999876421 1232 2479999999999998754
No 233
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.27 E-value=0.014 Score=63.33 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++.|++|+.++.|++++.+ +|+|+||...+. ++|+ -..|+||.||+|+|-.+.+
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~---~~g~-------~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCL---ETGE-------IHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEc---CCCc-------EEEEEeCeEEECCCCcccc
Confidence 57788999999999999999999999986 489999976321 2342 2579999999999998764
No 234
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.27 E-value=0.0017 Score=67.20 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=42.8
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCC---------cccccCCCCCeeE
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKW 428 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg---------~C~~~cp~~~I~w 428 (442)
+.+.|.+.|+.| +.|+.+||.+++.++.. .+ -.++|.-|. .|+.+||++++.+
T Consensus 208 iV~ID~dkCiGC------g~CV~ACPygAI~~n~~-~g------~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~f 269 (492)
T TIGR01660 208 IVLIDQDKCRGW------RMCISGCPYKKIYFNWK-TG------KSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 269 (492)
T ss_pred eEEEehhhccCh------HHHHHhCCCCCcEecCC-CC------ccccCCCChhHHhCCCCCcchhhcChhhhhh
Confidence 445589999999 68999999999988764 12 257999995 7999999998654
No 235
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.20 E-value=0.016 Score=63.05 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCC---CcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~---g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+.+.|.+++++.|++|+.++.|++++.+++ |+|+||...+. ++|+ -..++||.||+|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGE-------IHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCe-------EEEEEeCeEEECCCCCccc
Confidence 35788999999999999999999999998753 78999976321 2231 2478999999999998754
No 236
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.19 E-value=0.017 Score=60.07 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC-Cc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR-GS 87 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~-s~ 87 (442)
.+|-+.|.+.++++|++++.+++|.++..++ +++.+|.+.+ + ...+++|+.+|+|+|++ |.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~------g-------~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRN------H-------RDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecC------C-------ccceEECCEEEEccCCCcCH
Confidence 4677889999999999999999999998876 6788888753 1 02589999999999988 44
No 237
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.19 E-value=0.017 Score=63.02 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEc-EEEeccCCCCcccHHHH
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKLI 93 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak-~vI~AdG~~s~lar~l~ 93 (442)
+-..|.+.+++.|++|+++++|++|+.+++|+|+||.... +|+ ..+++|+ -||+|+|..+.- +.++
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~-------~~~i~a~~aVilAtGGf~~N-~em~ 281 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGR-------TLRIGARRGVILATGGFDHD-MDWR 281 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCc-------EEEEEeceeEEEecCcccCC-HHHH
Confidence 4455778888999999999999999998779999998742 332 3579997 699999998774 3344
Q ss_pred Hhc
Q 013495 94 KNF 96 (442)
Q Consensus 94 ~~~ 96 (442)
+++
T Consensus 282 ~~y 284 (584)
T PRK12835 282 KEY 284 (584)
T ss_pred HHh
Confidence 444
No 238
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.16 E-value=0.012 Score=62.54 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
..+.+.|.+.+++.|++|+.+++|.+|..++ +++.+|++.+ +.++.|+.||.|.|....+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC---------------CCEEEcCEEEECCChHHHHH
Confidence 4688889999999999999999999998876 7889999864 45799999999999876553
No 239
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.15 E-value=0.018 Score=62.11 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCcccc-CCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA-KDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~-~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++.|++|+.++.|++++.+++|+|+||.+.++.-. .+| ...++||.||+|+|..+.+
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g--------~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG--------VGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc--------EEEEEcCeEEECCCCCCCC
Confidence 577789999999999999999999999876678999976521000 111 1479999999999998864
No 240
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=96.15 E-value=0.0038 Score=68.24 Aligned_cols=61 Identities=7% Similarity=-0.108 Sum_probs=42.2
Q ss_pred CCCeEecCCCCCcccCCCCCccccccccc----cceEEEecCCCCceeEEEec---CCCccCCcccccCCCCCee
Q 013495 360 PAHLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQINA---QNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 360 ~~Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~~---~~Ci~Cg~C~~~cp~~~I~ 427 (442)
...++..|.+.|+.| +.|+|+|= .+++.+... .....+.... -.|..||.|+.+||++||+
T Consensus 133 ~~p~i~~d~~rCI~C------~rCvr~c~e~~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~ 200 (603)
T TIGR01973 133 LGPLIKTEMTRCIHC------TRCVRFANEVAGVEDLGVIGR-GNNVEIGTYEGKTLESELSGNLIDICPVGALT 200 (603)
T ss_pred CCCCeEecCCcCccc------cHHHHHHHHhhCCceEEEecc-CCCCEEecCCCCCCCCcccCChHhhCCccccc
Confidence 344667799999999 79999994 345655443 1111232211 2588899999999999986
No 241
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.07 E-value=0.037 Score=59.10 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=58.9
Q ss_pred ccCCEEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEecc
Q 013495 4 CHNGNRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 82 (442)
Q Consensus 4 ~~~~y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~Ad 82 (442)
...+++|+=..+.+.|++.|++.| |+|+.+++|+++..++++.+ .|.+.+. .+|+ ..+++|++||.|.
T Consensus 174 ~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~---~~G~-------~~~i~A~~VVvaA 242 (494)
T PRK05257 174 IEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDL---KTGE-------KRTVRAKFVFIGA 242 (494)
T ss_pred cCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEc---CCCc-------eEEEEcCEEEECC
Confidence 345678999999999999999987 89999999999998665632 3443210 1120 1369999999999
Q ss_pred CCCCcccHHHHHhcCCc
Q 013495 83 GCRGSLSEKLIKNFKLR 99 (442)
Q Consensus 83 G~~s~lar~l~~~~gl~ 99 (442)
|.+|. .|.+.+|+.
T Consensus 243 Gg~s~---~L~~~~Gi~ 256 (494)
T PRK05257 243 GGGAL---PLLQKSGIP 256 (494)
T ss_pred CcchH---HHHHHcCCC
Confidence 98854 344456765
No 242
>PLN02676 polyamine oxidase
Probab=96.04 E-value=0.35 Score=51.58 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=30.6
Q ss_pred CCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 216 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 216 ~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
+++.++|++.....+-+ |+-|+.||+.||+.|.+.+..
T Consensus 438 gri~FAGe~ts~~~~g~---~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 438 GRVYFTGEHTSEKYNGY---VHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CceEEeccccccccccc---hHHHHHHHHHHHHHHHHHhcc
Confidence 58999999987655544 455999999999999987754
No 243
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.02 E-value=0.025 Score=59.71 Aligned_cols=64 Identities=25% Similarity=0.172 Sum_probs=51.5
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
.....++=.+|.+.|++.|++.||+|+++++|+++.. +..+.|+|.+ | +++|+.||.|+|+
T Consensus 175 ~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~---------------g-~v~A~~VV~Atga 235 (460)
T TIGR03329 175 PVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPD---------------G-QVTADKVVLALNA 235 (460)
T ss_pred CCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCC---------------c-EEECCEEEEcccc
Confidence 3445678889999999999999999999999999874 2335677653 3 7999999999998
Q ss_pred CCc
Q 013495 85 RGS 87 (442)
Q Consensus 85 ~s~ 87 (442)
.+.
T Consensus 236 ~s~ 238 (460)
T TIGR03329 236 WMA 238 (460)
T ss_pred ccc
Confidence 853
No 244
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.01 E-value=0.022 Score=59.32 Aligned_cols=59 Identities=29% Similarity=0.332 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+-..|.++++++||+|+.+++|.++..++ +.+..|++.+ +.+++|+.||+|+|-.|.
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~---------------~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKN---------------GGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETT---------------TEEEEESEEEE----SSS
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccC---------------cccccCCEEEEecCCCCc
Confidence 3567889999999999999999999999877 4567888842 479999999999998764
No 245
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.99 E-value=0.023 Score=61.77 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++.|++++.++.+++++.++ |+|+||...+. .+|+ -..++||.||+|+|..+.+
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKVVGIVAMQM---KTLT-------PFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEC---CCCe-------EEEEEeCeEEECCCccccc
Confidence 466778899999999999999999999875 89999987531 1221 2478999999999988754
No 246
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.98 E-value=0.0019 Score=34.76 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.0
Q ss_pred CccCCcccccCCCCC
Q 013495 411 CLHCKACDIKDPKQN 425 (442)
Q Consensus 411 Ci~Cg~C~~~cp~~~ 425 (442)
|.+|+.|..+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 788999999999876
No 247
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.94 E-value=0.003 Score=66.28 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=36.9
Q ss_pred CCCCCcccCCCCCccccccccccceEEEe-----cCCCCceeEEEecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~-----~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+.+.|+.| +.|..+||.+++... ...+-.....++...|++||.|..+||.+.
T Consensus 361 ~~~~Ci~C------g~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~i 418 (435)
T TIGR01945 361 PEKPCIRC------GKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSNI 418 (435)
T ss_pred cCCcCcCc------cchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCCC
Confidence 46899998 799999999854210 000011123567789999999999999753
No 248
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.94 E-value=0.033 Score=60.67 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEE-cEEEeccCCCCcccHH
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEK 91 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~A-k~vI~AdG~~s~lar~ 91 (442)
..|-..|.+++++.|++|+.+++|++++.++ ++|+||.+.. +|+ ..+++| +.||+|+|..+.. ++
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n-~e 286 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRH-PQ 286 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccC-HH
Confidence 3577889999999999999999999998764 8999998753 221 246886 7899999999886 34
Q ss_pred HHHhc
Q 013495 92 LIKNF 96 (442)
Q Consensus 92 l~~~~ 96 (442)
+++++
T Consensus 287 m~~~~ 291 (578)
T PRK12843 287 LRREL 291 (578)
T ss_pred HHHHh
Confidence 55544
No 249
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=95.94 E-value=0.0057 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=15.5
Q ss_pred EEecCCCccCCcccccCCCCCeeEE
Q 013495 405 QINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 405 ~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+||.+.|+.||.|..+||.++|...
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i 26 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAI 26 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-E
T ss_pred EECcccccChhhHHhHcCccceeeE
Confidence 6899999999999999998666543
No 250
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.94 E-value=0.03 Score=60.82 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEE-cEEEeccCCCCcccHHH
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEKL 92 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~A-k~vI~AdG~~s~lar~l 92 (442)
.|-..|.+++++.|++|+.+++|++++.+ +|+|+||.... +|. ...++| |.||+|+|-.+... ++
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n~-em 283 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHDM-EM 283 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCccccH-HH
Confidence 34567888899999999999999999976 48999997642 221 245777 68999999998863 34
Q ss_pred HHhc
Q 013495 93 IKNF 96 (442)
Q Consensus 93 ~~~~ 96 (442)
++++
T Consensus 284 ~~~y 287 (564)
T PRK12845 284 RWKF 287 (564)
T ss_pred HHHh
Confidence 4444
No 251
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.90 E-value=0.026 Score=61.17 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEc-EEEeccCCCCcccHHH
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 92 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak-~vI~AdG~~s~lar~l 92 (442)
.|-+.|.++|++.|++|+.+++|++++.++ |+|+||.... +|+ ..+++|+ .||+|+|..+.- +.+
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~N-~em 274 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGHN-AEM 274 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccCC-HHH
Confidence 567788999999999999999999999875 8999998752 232 2578994 799999988774 334
Q ss_pred HHhc
Q 013495 93 IKNF 96 (442)
Q Consensus 93 ~~~~ 96 (442)
++++
T Consensus 275 ~~~~ 278 (557)
T PRK12844 275 RKRY 278 (557)
T ss_pred HHHh
Confidence 4433
No 252
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.86 E-value=0.023 Score=61.31 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++.||+|+.++.|++++.+++++|+||...+. ++|+ ...++||.||+|+|..+.+
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~---~~g~-------~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDL---RNGE-------IFPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEEC---CCCc-------EEEEEcCcEEECCCCCCCC
Confidence 466778888999999999999999999886556999875421 2332 2579999999999998754
No 253
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=95.86 E-value=0.0081 Score=60.30 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=46.4
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEECcCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
+.+|.+|- .-.|+..||.|++-..++ +| -+.||..+|-.=-.|+..||+.-|-++...|
T Consensus 180 PRiCeHCL----NPsCvasCPsgaiYKReE-DG--IVLiDQd~CRGwR~CvsgCPYKKvYfNwksg 238 (513)
T COG1140 180 PRLCEHCL----NPSCVASCPSGAIYKREE-DG--IVLIDQDKCRGWRMCVSGCPYKKVYFNWKSG 238 (513)
T ss_pred HHHHhhcC----CcHHhhcCCccccccccc-Cc--eEEeecccccchhhhhcCCCcceeEeeccCC
Confidence 45899984 456999999997655433 46 7899999999999999999999986544333
No 254
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=95.84 E-value=0.0063 Score=68.50 Aligned_cols=60 Identities=5% Similarity=-0.151 Sum_probs=40.4
Q ss_pred CeEecCCCCCcccCCCCCccccccccc----cceEEEecCCCCceeEEEe---cCCCccCCcccccCCCCCeeE
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQIN---AQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~---~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
.++..|.+.|+.| +.|+|+|= .+++.+.... ...++... .-.|.-||.|+.+||++||+=
T Consensus 137 p~i~~d~~rCi~C------~rCvr~c~ev~g~~~l~~~~rg-~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~ 203 (776)
T PRK09129 137 PLISTEMTRCIHC------TRCVRFGQEIAGVMELGMMGRG-EHSEITTYVGKTVDSELSGNMIDLCPVGALTS 203 (776)
T ss_pred cceeecccccccC------cHHHHHHHHhcCCceeeeeccC-CCCEEcCCCCCCccCcccCCchhhCCcccccc
Confidence 3445599999999 79999994 4566654321 11122211 234777999999999999863
No 255
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.84 E-value=0.021 Score=62.05 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=47.8
Q ss_pred EEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 9 RKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.++|..|.++|.+.+++. |++++. ..|.+++.++ +.|+||.+.+ |.+++|+.||+|+|..+
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~-grV~GV~t~d---------------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVEN-GRVVGVVTQD---------------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecC-CEEEEEEECC---------------CCEEECCEEEEeeCcch
Confidence 456666667777777765 899875 4688888776 7899999874 46899999999999654
No 256
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=95.82 E-value=0.0065 Score=68.57 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=41.0
Q ss_pred CeEecCCCCCcccCCCCCccccccccc----cceEEEecCCCCceeEEEe---cCCCccCCcccccCCCCCee
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQIN---AQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~---~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
+..+.|.+.|+.| +.|+|+|= .+++.+... ....++... .-+|..||.|+.+||++||+
T Consensus 143 ~~i~~d~~rCI~C------~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 143 TQVLLDRERCVLC------ARCTRFSDQIAGDPFIDLQER-GALQQVGIYEGEPFQSYFSGNTVQICPVGALT 208 (797)
T ss_pred cceeecccccccC------cHHHHHHHhhcCCcEEEeeec-CCCCEEecCCCCCcCccccCCchhhCCccccc
Confidence 4566799999999 68999994 345555432 111123322 24678899999999999986
No 257
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.75 E-value=0.0047 Score=55.89 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=42.0
Q ss_pred eEecCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccC---CcccccCCCCCeeEEC
Q 013495 363 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---KACDIKDPKQNIKWTV 430 (442)
Q Consensus 363 l~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~C---g~C~~~cp~~~I~w~~ 430 (442)
..+.|.++|++| +.|..+||-|+++++......++..+--+.|.+= .+|+.+||++|++...
T Consensus 76 ~v~V~~ekCiGC------~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~ 140 (165)
T COG1142 76 AVQVDEEKCIGC------KLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVD 140 (165)
T ss_pred ceEEchhhccCc------chhhhcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhccc
Confidence 344589999999 7999999999999876410001222223334332 4599999999987654
No 258
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.69 E-value=0.036 Score=60.69 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHH----CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEE----LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~----~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+...|.+.+++ .||+|+.++.|++++.+++|+|+||.+.+. .+|+ -..++||.||+|+|-.+.+
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~-------~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGE-------IETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCc-------EEEEEcCEEEECCCCCcCc
Confidence 344555555544 489999999999999876679999987531 1332 2578999999999987544
No 259
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=95.68 E-value=0.0078 Score=68.44 Aligned_cols=59 Identities=5% Similarity=-0.181 Sum_probs=41.3
Q ss_pred CeEecCCCCCcccCCCCCccccccccc----cceEEEecCCCCceeEEEe-----cCCCccCCcccccCCCCCeeEE
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQIN-----AQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~-----~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.++..|.+.|+.| +.|+|+|- ..++.+... + .+..|. .-.|-.||.|+.+||++||+=+
T Consensus 142 ~~i~~d~~rCi~C------~rCVr~c~e~~g~~~l~~~~~--~-~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k 209 (847)
T PRK08166 142 PFISHEMNRCIAC------YRCVRYYKDYAGGTDLGVYGA--H-DNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDK 209 (847)
T ss_pred CceEecCCcCccc------cHHHHHHHhhcCcceEEEeec--C-ceeEecCCCCCcccChhhCChHhhCCchhcccc
Confidence 3566799999999 79999995 334444321 1 133333 2357789999999999998643
No 260
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.68 E-value=0.031 Score=61.58 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 17 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 17 ~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+.|.+++++.||+|+.++.|++++.++ |+|+||.+.+. .+|+ -..+.||.||+|+|-.+.+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~---~~g~-------~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNL---VTGE-------IERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEEC---CCCc-------EEEEECCEEEECCCCcccC
Confidence 667778889999999999999999875 89999987531 1332 1479999999999997764
No 261
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.65 E-value=0.046 Score=59.48 Aligned_cols=65 Identities=29% Similarity=0.352 Sum_probs=51.5
Q ss_pred ehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEc-EEEeccCCCCcc
Q 013495 11 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSL 88 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak-~vI~AdG~~s~l 88 (442)
.-..+-+.|.+++++.|++|+.++.|++++.++ ++|+||++.+ .++ ..+++|+ .||+|+|..+.-
T Consensus 212 ~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~----~~~--------~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 212 SGNALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVID----AGG--------ERRITARRGVVLACGGFSHD 277 (574)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEc----CCc--------eEEEEeCCEEEEcCCCccch
Confidence 335677889999999999999999999999875 8899998753 112 2468884 899999998753
No 262
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.56 E-value=0.036 Score=59.00 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+-+.|.+++++ .|++|+.++.|++++.++ +.|+||.+.+ . + ....++|+.||+|+|..+.+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~Gv~~~~----~-~-------~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWN----R-E-------TVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEEEEEEEE----C-C-------cEEEEEcCEEEECCCcccCC
Confidence 3678889999998 699999999999998765 7889988763 1 1 12579999999999999875
No 263
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.54 E-value=0.041 Score=59.84 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+-+.|.+++++.|++|+.++.|++++.++ |+|+||...+. .+|+ ...++|+.||+|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYHI---ADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEc---CCCe-------EEEEECCEEEECCCCCcCC
Confidence 3577788999999999999999999999874 88999875321 2231 2469999999999998754
No 264
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.51 E-value=0.83 Score=48.01 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred CCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhc
Q 013495 216 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 255 (442)
Q Consensus 216 ~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~ 255 (442)
+++.++|+. +.+.||.-|+.||+.||+.|++.++
T Consensus 429 ~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 429 PNIYLAGAS------YYGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CCeEEeccc------cccccHHHHHHHHHHHHHHHHHHhh
Confidence 799999999 3466899999999999999987653
No 265
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.50 E-value=0.045 Score=58.58 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++.|++|+.+++|++++.++ |+|+||.+.. .+|+ ..+++||.||+|+|..+..
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD-GKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC-CEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccC
Confidence 467788999999999999999999998764 8899987752 2221 2579999999999987764
No 266
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.47 E-value=0.56 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.2
Q ss_pred cCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhh
Q 013495 215 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 254 (442)
Q Consensus 215 ~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al 254 (442)
.+|+.++||.- .+-||.-||.||+.||+.+.+.+
T Consensus 427 ~~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 427 YPGVFLTGNSF------EGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CCCEEEecccc------CCCcHHHHHHHHHHHHHHHHHhh
Confidence 47999999883 36699999999999999998765
No 267
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.47 E-value=0.038 Score=60.03 Aligned_cols=62 Identities=13% Similarity=0.365 Sum_probs=49.7
Q ss_pred EEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 9 RKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 9 ~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.++|..|-++|.+.+++. |++++.+ .|.+++.++++.|++|.+.+ |.+++|+.||+|+|...
T Consensus 92 QVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~---------------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 92 QIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD---------------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred hCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC---------------CCEEECCEEEEccCccc
Confidence 556666667888888887 7898866 68888776457899999874 45899999999999994
No 268
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.46 E-value=0.0025 Score=38.77 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred cCCCCCcccCCCCCccccccccccceE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVY 392 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y 392 (442)
.|++.|.+| +.|+++||.+|+
T Consensus 4 id~~~C~~C------g~C~~~Cp~~ai 24 (24)
T PF12837_consen 4 IDPDKCIGC------GDCVRVCPEGAI 24 (24)
T ss_pred EChhhCcCh------hHHHHhcchhcC
Confidence 489999999 799999999874
No 269
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=95.44 E-value=0.09 Score=56.16 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=57.3
Q ss_pred ccCCEEEehHHHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCc-EEEEE-eCCccccCCCCCccCCCCceEEEEcEEEe
Q 013495 4 CHNGNRKSLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNK-VIGIG-TNDMGIAKDGSKKENFQRGVELRGRITLL 80 (442)
Q Consensus 4 ~~~~y~v~R~~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~-v~gV~-t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~ 80 (442)
...+..|+...+.+.|++.+++ .|++|+++++|+++..++++. .+.++ +.. | ...+++|++||.
T Consensus 175 ~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~------g-------~~~~i~Ad~VV~ 241 (497)
T PRK13339 175 IDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNT------G-------EKREQVADYVFI 241 (497)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCC------C-------ceEEEEcCEEEE
Confidence 3456789999999999999975 599999999999998773343 22221 221 1 013699999999
Q ss_pred ccCCCCcccHHHHHhcCCc
Q 013495 81 AEGCRGSLSEKLIKNFKLR 99 (442)
Q Consensus 81 AdG~~s~lar~l~~~~gl~ 99 (442)
|.|.+| ..|.+.+|+.
T Consensus 242 AAGawS---~~La~~~Gi~ 257 (497)
T PRK13339 242 GAGGGA---IPLLQKSGIP 257 (497)
T ss_pred CCCcch---HHHHHHcCCC
Confidence 999996 4444566775
No 270
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.37 E-value=0.041 Score=60.85 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+-..|.+++++.||+|+.++.|++++.++ |+|+||...+. ++|+ -..++||.||+|+|..+.+
T Consensus 160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~---~~G~-------~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 160 MLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCL---ITGE-------LRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEc---CCCc-------EEEEEcCeEEECCCcccCC
Confidence 44578899999999999999999999875 88999876531 2342 2468899999999987765
No 271
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.35 E-value=0.048 Score=59.73 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 12 LSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
-..+.+.|.+.|++.| |+|+.++.|.+++.++ ++|+||...+. .+|+ ...++|+.||+|+|..+.
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGAVGFSV---RENK-------FYVFKAKAVIVATGGAAG 196 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEEEEEEc---cCCc-------EEEEECCEEEECCCchhh
Confidence 3478889999998886 9999999999998775 78889864220 1221 247999999999998764
No 272
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=95.34 E-value=0.0075 Score=50.38 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=25.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.+.|+.++|+.|+.|..+||+++|.+..
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhcccc
Confidence 7899999999999999999999998764
No 273
>PRK13984 putative oxidoreductase; Provisional
Probab=95.29 E-value=0.013 Score=64.01 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=21.1
Q ss_pred ecCCCCCcccCCCCCccccccccccceEEEec
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPARVYEYVP 396 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~ 396 (442)
..|.+.|..| +.|...||.+++++..
T Consensus 82 ~i~~~~c~~c------~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 82 VIDYGRCSFC------ALCVDICTTGSLKMTR 107 (604)
T ss_pred ccCcccCcCc------chHHhhCCcCcEEecc
Confidence 3477889887 6899999999987743
No 274
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.22 E-value=0.0095 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=8.8
Q ss_pred eEEEecCCCccCCcccccCCC
Q 013495 403 KLQINAQNCLHCKACDIKDPK 423 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~ 423 (442)
|+.||.++|+.||.|..+||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 578999999999999999998
No 275
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.21 E-value=0.068 Score=56.57 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
..+-+.|.+++++.|++++.+ .+.+++.++ ++|+||.+. +..++|+.||+|+|..+.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~~----------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFLD----------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence 368889999999999999986 788888754 788898764 35799999999999998764
No 276
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=95.20 E-value=0.0099 Score=54.92 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=36.9
Q ss_pred cccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
|+-+.-.|..-++..++-.| ++.+|.++|+.||.|..+||.++|.-.
T Consensus 12 g~~T~~yP~~~~~~p~~~rG--~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~ 58 (181)
T PRK08222 12 GTATVKYPFAPLEVSPGFRG--KPDLMPSQCIACGACTCACPANALTIQ 58 (181)
T ss_pred CCccccCCCcccCCCCCccC--ceEeChhhCcchhHHHHhCCccceEcc
Confidence 45556668777776554344 788999999999999999999998754
No 277
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.19 E-value=0.0078 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.8
Q ss_pred cCCCCCcccCCCCCccccccccccceEE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYE 393 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~ 393 (442)
.|++.|+.| +.|..+||.+|++
T Consensus 3 id~~~C~~C------g~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIGC------GRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-------THHHHHSTTSSEE
T ss_pred EchHHCCCc------chhhhhcccccCC
Confidence 478999999 7999999999975
No 278
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=95.19 E-value=0.0043 Score=68.43 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=35.8
Q ss_pred CCCCCcccCCCCCccccccccccceEEEec----CCCCc-eeEEEecCCCccCCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVP----DEKNQ-LKLQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~----~~~~~-~~~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
..+.|+.| +.|..+||.+. ...+ ...+. ..+..+...|+.||.|..+||.+
T Consensus 397 ~~~kCI~C------G~Cv~aCP~~l-~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 397 LANKCTQC------GNCVRTCPNSL-RVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred hcccCCCc------ccchhhCCCCc-chHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 36899998 78999999872 2111 00111 13455678999999999999986
No 279
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.17 E-value=0.0055 Score=67.63 Aligned_cols=39 Identities=21% Similarity=-0.037 Sum_probs=31.3
Q ss_pred cccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 213 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 213 ~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
..-+|++++||++...+ =+..|+..|+.||..|...|.+
T Consensus 464 Ts~pgVfA~GDv~~g~~-----~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 464 TSVAGVFAGGDCVTGAD-----IAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCCCCEEEcCCcCCCch-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 34699999999985322 2578999999999999988865
No 280
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.17 E-value=0.061 Score=56.41 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++ .||+|+.+++|.+|+.++ ++|+||...+ +|+ ..+++||.||+|+|..+.+
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCIGAICLK-----DNK-------QINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEEEEEEEE-----CCc-------EEEEEcCeEEEccCccccc
Confidence 466677778775 599999999999998765 7888976432 121 2479999999999986643
No 281
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.16 E-value=0.072 Score=54.59 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+-+.|..+.++.||+|+++++|.++..+++ ...|.+.+ |.+++|+.+|+|+|-.|.
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--~f~l~t~~---------------g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDS--GFRLDTSS---------------GETVKCDSLILATGGKSW 168 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEecCc--eEEEEcCC---------------CCEEEccEEEEecCCcCC
Confidence 34566778889999999999999999998863 35677664 458999999999997665
No 282
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.15 E-value=0.089 Score=56.43 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEc-EEEeccCCCCcccHH
Q 013495 14 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 91 (442)
Q Consensus 14 ~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak-~vI~AdG~~s~lar~ 91 (442)
.+..++ +++++ .|++|+++++|++++.++ |+|+||.... +|+ ..+++|+ -||+|+|..+.. +.
T Consensus 175 l~~~l~-~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~-----~g~-------~~~i~A~k~VIlAtGG~~~n-~~ 239 (513)
T PRK12837 175 LIGRFL-AALARFPNARLRLNTPLVELVVED-GRVVGAVVER-----GGE-------RRRVRARRGVLLAAGGFEQN-DD 239 (513)
T ss_pred HHHHHH-HHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEE-----CCc-------EEEEEeCceEEEeCCCccCC-HH
Confidence 444444 44544 599999999999999874 8999998642 232 2579996 788888887665 44
Q ss_pred HHHhcC
Q 013495 92 LIKNFK 97 (442)
Q Consensus 92 l~~~~g 97 (442)
+++++.
T Consensus 240 m~~~~~ 245 (513)
T PRK12837 240 MRARYG 245 (513)
T ss_pred HHHHhc
Confidence 555554
No 283
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.14 E-value=0.032 Score=57.78 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 12 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+-..+++-|+++|++|++...|.+|+.|+ |.++||++.| |.++++|.||--.+.+-..
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 34677889999999999999999999999998 9999999986 6899999999655555443
No 284
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=95.10 E-value=0.014 Score=64.84 Aligned_cols=60 Identities=12% Similarity=-0.081 Sum_probs=39.0
Q ss_pred CeEecCCCCCcccCCCCCccccccccc--cceEEEecCCCCc-eeEEEe---cCCCccCCcccccCCCCCee
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESRYCP--ARVYEYVPDEKNQ-LKLQIN---AQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~~CP--a~~y~~~~~~~~~-~~~~i~---~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.++..|.+.|+.| +.|+|+|= +|+-.+.-...|. .++... .-.|.-||.|+.+||++||+
T Consensus 138 p~i~~~~~rCI~C------~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~ 203 (687)
T PRK09130 138 PLVKTVMTRCIHC------TRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALT 203 (687)
T ss_pred CcEEEecccCCcc------cHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCcccc
Confidence 3566789999999 79999994 4443332111121 122211 22377799999999999986
No 285
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=95.02 E-value=0.0067 Score=59.97 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=35.1
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCc---eeEEE------------ecCCCc-cCCcccccCCCCCee
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ---LKLQI------------NAQNCL-HCKACDIKDPKQNIK 427 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~---~~~~i------------~~~~Ci-~Cg~C~~~cp~~~I~ 427 (442)
.+.|.+| +.|+..||++++.....-+.. .-+.+ +-.+|+ +|+.|..+||++...
T Consensus 158 ~~~C~~C------~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~~ 227 (282)
T TIGR00276 158 EEYCGRC------TKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKKG 227 (282)
T ss_pred CCCCccH------HHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCCC
Confidence 4789888 689999999997521110100 01111 234686 699999999987743
No 286
>PLN02976 amine oxidase
Probab=95.00 E-value=2.1 Score=51.06 Aligned_cols=53 Identities=21% Similarity=0.058 Sum_probs=38.3
Q ss_pred cccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc-------CchHHHHHHHHH
Q 013495 213 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-------DSNMEIYWDTLQ 268 (442)
Q Consensus 213 ~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~-------~~~l~~Y~~~~~ 268 (442)
+.+++++++|++...-.|-+ ||-|+.||..||+.|+..+.. .++|+.+++..+
T Consensus 1148 PVggRLFFAGEATS~~~pGT---VHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~ 1207 (1713)
T PLN02976 1148 PVENCLFFAGEATCKEHPDT---VGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSE 1207 (1713)
T ss_pred CCCCcEEEEehhhhCCCcch---HHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhh
Confidence 34557999999987666654 455999999999999988864 144555554443
No 287
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=94.96 E-value=0.013 Score=61.32 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=33.0
Q ss_pred cCCCCCcccCCCCCccccccccccce------EEEec-CCC---------CceeEEEecCCCccCCcccccCCCCC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARV------YEYVP-DEK---------NQLKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~------y~~~~-~~~---------~~~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
.+...|+.| +.|..+||+-- |.... +.. |.....-....|..||.|..+||.+.
T Consensus 290 ~e~~~CIrC------G~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 290 REVLACIRC------GACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKI 359 (432)
T ss_pred hhHhhCCCC------CCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCCC
Confidence 346789998 79999999631 11000 000 00011112368999999999999753
No 288
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.95 E-value=0.35 Score=47.72 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=49.0
Q ss_pred EEEehHHHHHHHHHHHHHCC-cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 8 NRKSLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
-+|.-..|+++|+++|++.| |++..| .|.++. ++.+++.+|-..+ ..+ +.....+..+|+|-|+++
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPWT 208 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPWT 208 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCCc
Confidence 46778899999999999976 999998 688886 3336666654331 001 245677899999999996
Q ss_pred c
Q 013495 87 S 87 (442)
Q Consensus 87 ~ 87 (442)
+
T Consensus 209 s 209 (380)
T KOG2852|consen 209 S 209 (380)
T ss_pred h
Confidence 5
No 289
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.90 E-value=0.077 Score=57.85 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++.+. |++++.++.|++++.++ |+|+||...+. .+|+ -..++||.||+|+|..|.+
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GHVRGLVAMNM---MEGT-------LVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CEEEEEEEEEc---CCCc-------EEEEECCEEEECCCCCcCC
Confidence 4667788888775 89999999999999875 88999875321 2232 2579999999999998876
No 290
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=94.90 E-value=0.089 Score=57.35 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++. |++++.++.|++++.++ |+|+||...+. ++|+ -..++||.||+|+|..+.+
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GRVCGLVAIEM---AEGR-------LVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CEEEEEEEEEc---CCCc-------EEEEecCEEEEcCCCCccc
Confidence 5778888888774 89999999999999875 88999875321 2332 2579999999999998865
No 291
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.79 E-value=0.068 Score=57.33 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.++++ .||+|++++.|++++.++ ++|+||.+.+ .+|+ -..++||.||+|+|..+.+
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~----~~g~-------~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCIGVLTKD----SEGK-------LKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEEEEEEEE----CCCc-------EEEEEcCeEEEecCCCccc
Confidence 36667777776 699999999999998765 8899998753 2332 2478999999999998753
No 292
>PRK09077 L-aspartate oxidase; Provisional
Probab=94.78 E-value=0.083 Score=57.00 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHC-CcEEecCCeEeEEEEcC-----CCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAEEL-GVEIYPGFAASEILYDA-----DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~-----~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+.+.|.+++++. |++|+.++.|++++.++ +++|+||...+. .+|+ -..|+|+.||+|+|..+.
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR---NKER-------VETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC---CCCc-------EEEEecCeEEECCCCCCC
Confidence 6778888888775 89999999999998764 378999986431 2232 257999999999999876
Q ss_pred c
Q 013495 88 L 88 (442)
Q Consensus 88 l 88 (442)
+
T Consensus 209 ~ 209 (536)
T PRK09077 209 V 209 (536)
T ss_pred C
Confidence 4
No 293
>PLN03000 amine oxidase
Probab=94.76 E-value=1.1 Score=50.97 Aligned_cols=38 Identities=16% Similarity=-0.032 Sum_probs=31.8
Q ss_pred CCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 216 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 216 ~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
+++.++|++.....|- -||-|+.||..||+.|.+.+..
T Consensus 588 GRIfFAGEaTs~~~~G---TVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 588 GRLFFAGEATTRRYPA---TMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred CcEEEeehHHhCCCCe---eHHHHHHHHHHHHHHHHHHhhh
Confidence 4899999998877664 4667999999999999988764
No 294
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=94.74 E-value=0.013 Score=47.48 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=25.1
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.+.+|.++|++|+.|..+||.++|++.
T Consensus 15 ~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 15 VTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eEEECHhHCCCcchHHHHcChhhceee
Confidence 678999999999999999999999876
No 295
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.71 E-value=0.12 Score=55.87 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=49.8
Q ss_pred HHHHHHHHHH---HC-CcEEecCCeEeEEEEcCCCcEEEEEeCCc--cccCCCCCc-cCCCCceEEEEcEEEeccCCCCc
Q 013495 15 LVRWLGGKAE---EL-GVEIYPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKK-ENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 15 fd~~L~~~Ae---~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~--g~~~~G~~~-~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+-+.|.++++ +. |++|++++++++++.++ |+|+||...+. +-..+|+.+ .+-....+|+||-||+|+|-.+.
T Consensus 150 ~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 150 VVEPFERRVREAAARGLVRFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 5566666654 23 69999999999999874 89999986310 000000000 00001257999999999999988
Q ss_pred ccHHHHHh
Q 013495 88 LSEKLIKN 95 (442)
Q Consensus 88 lar~l~~~ 95 (442)
..+ ++++
T Consensus 229 n~e-m~~~ 235 (549)
T PRK12834 229 NHE-LVRR 235 (549)
T ss_pred CHH-HHHH
Confidence 643 4343
No 296
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=94.70 E-value=0.035 Score=54.60 Aligned_cols=56 Identities=4% Similarity=-0.184 Sum_probs=36.7
Q ss_pred ecCCCCCcccCCCCCccccccccc----cceEEEecCCCCceeEEEecC--CCcc--CCcccccCCCCCee
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKNQLKLQINAQ--NCLH--CKACDIKDPKQNIK 427 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CP----a~~y~~~~~~~~~~~~~i~~~--~Ci~--Cg~C~~~cp~~~I~ 427 (442)
..|.+.|+.| +.|+|+|- .+++.+.... ...++..... .|.. ||.|+.+||++||+
T Consensus 208 ~~D~nKCIlC------gRCVRaC~EVqg~~aL~~~~RG-~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~ 271 (297)
T PTZ00305 208 RVVLNRCIHC------TRCVRFLNEHAQDFNLGMIGRG-GLSEISTFLDELEVKTDNNMPVSQLCPVGKLY 271 (297)
T ss_pred eecCCcCcCc------cHHHHHHHHhhCCcEEEEeecC-CCCEEeecCCCcccccCCCCceeeECCCcccc
Confidence 3589999999 79999995 3466664421 1123333222 2443 56699999999985
No 297
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.70 E-value=0.11 Score=52.78 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=47.3
Q ss_pred CCEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 6 NGNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
+...++=..|.+.|++.+++. |++|+++++|.++.. + +|+|.+ | +++|+.||.|+|+
T Consensus 138 ~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~ 195 (365)
T TIGR03364 138 DELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGA 195 (365)
T ss_pred CCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCC
Confidence 344667778999999998875 999999999999853 2 466653 2 5789999999999
Q ss_pred CCc
Q 013495 85 RGS 87 (442)
Q Consensus 85 ~s~ 87 (442)
.+.
T Consensus 196 ~s~ 198 (365)
T TIGR03364 196 DFE 198 (365)
T ss_pred Chh
Confidence 853
No 298
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.68 E-value=0.1 Score=55.47 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+-+.|.+.+++.|++|+.++.|.+|..++ +++++|++.+ |.+++|+.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD---------------GERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC---------------CCEEECCEEEECCcHHHHH
Confidence 5788999999999999999999999999876 6788998864 4579999999988875443
No 299
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=94.63 E-value=0.016 Score=45.50 Aligned_cols=27 Identities=26% Similarity=0.601 Sum_probs=25.1
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++.|+.+.|++|+.|..+||.++|.|.
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~ 45 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQED 45 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEec
Confidence 678999999999999999999999885
No 300
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=94.58 E-value=0.0079 Score=61.35 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=31.7
Q ss_pred CCCCcccCCCCCccccccccccc-eEEEecCCCCceeEEEecCCCccCCcccccCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPAR-VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 423 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~-~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~ 423 (442)
-++|.+| ..|..+||+- .++..-+ -++..+.--...|.+||.|..+||.
T Consensus 32 ~~iC~~C------r~C~~~CpvfP~l~~r~~-~~~~d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 32 MQICNAC------RYCEGFCAVFPAMTRRLE-FGKADIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred hHhCCCC------CCccccCCCchhhhhhhc-CChhhhHHHHHhCcCcccccccCcC
Confidence 5799999 6899999974 2211000 0101222234589999999999996
No 301
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.56 E-value=0.0081 Score=59.40 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=26.7
Q ss_pred eeEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 402 LKLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 402 ~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
+++.+|.+.|..||.|..+||++||+|.-
T Consensus 165 ~~P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 165 WKPKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred ecCccCHHHhchhHhHHHhCCCCceeecc
Confidence 46889999999999999999999999973
No 302
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=94.54 E-value=0.011 Score=59.50 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=36.0
Q ss_pred CCCcccCCCCCccccccccccceEEEecCCCCce--eEEEecCCCc-------------cCCcccccCCCCCeeEECcCC
Q 013495 369 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQL--KLQINAQNCL-------------HCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~--~~~i~~~~Ci-------------~Cg~C~~~cp~~~I~w~~p~g 433 (442)
+.|-.| ..|..+||++++.-....+... .+.-+.-.|. .|+.|..+||.. +|..++.
T Consensus 185 ~~Cg~C------~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn--r~~~~~~ 256 (337)
T COG1600 185 DHCGSC------TRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN--RFAQLTS 256 (337)
T ss_pred ccChhh------HHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc--ccccccc
Confidence 789888 6899999999986433211111 1111112233 699999999976 5665543
No 303
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.54 E-value=0.078 Score=56.88 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++. ||+|+.++.|++++.++ |+|+||.+.+ ++. ...++|+.||+|+|..+.+
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~~~-------~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAAT-----AGG-------PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEe-----CCe-------EEEEECCEEEEcCCCCcCC
Confidence 5777888888875 99999999999998764 8899998753 110 1469999999999997654
No 304
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.53 E-value=2.1 Score=44.39 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=41.8
Q ss_pred EEEehHHHHHHHHHHHHHCCc-EEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 8 NRKSLSQLVRWLGGKAEELGV-EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gv-ei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
|..-+.-+..++..-++.++. +|+.+++|++|..++++ +.|.+.+ |.++.|+.||.|.-..
T Consensus 213 ~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~---------------g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 213 FGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSN---------------GGEIEADAVIVAVPHP 274 (451)
T ss_pred eEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECC---------------CCEEEcCEEEECCCHH
Confidence 333445555555555555555 89999999999987643 4565543 3579999999986653
No 305
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.53 E-value=0.2 Score=51.94 Aligned_cols=57 Identities=30% Similarity=0.352 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 12 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
...+.+.|.+.+++.|++++.++.|.++..++ + .+.|++. +.+++|+.||.|+|..|
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~----------------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETS----------------GGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEEC----------------CcEEEcCEEEECCCCcc
Confidence 36788899999999999999999999997654 3 4566653 24789999999999876
No 306
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.47 E-value=0.12 Score=56.47 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCC----cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELG----VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~G----vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++.+ ++++.++.+++++.+++|+|+||...+. .+|+ -..++||.||+|+|-.+.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTME-------IESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCc-------EEEEECCEEEECCCCCcCC
Confidence 46667888777654 7899999999999876689999987531 1221 1468999999999998864
No 307
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.46 E-value=0.025 Score=47.49 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=25.4
Q ss_pred eeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 402 LKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 402 ~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..+.++.++|+.|+.|...||.++|.+.
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred eeEEECcccCccccchhhhCCHhheEec
Confidence 3688999999999999999999999875
No 308
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.44 E-value=0.11 Score=56.66 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++ .|++++.++.|++++.++ |+|+||...+. .+|+ -..++||.||+|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-GVFKGVTAIDL---KRGE-------FKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-CEEEEEEEEEc---CCCe-------EEEEECCcEEEcCchhccc
Confidence 366778888876 699999999999999875 88999875321 1231 1468999999999998754
No 309
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=94.44 E-value=0.15 Score=60.13 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHH---CCcEEecCCeEeEEEEcCC----C----cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEecc
Q 013495 14 QLVRWLGGKAEE---LGVEIYPGFAASEILYDAD----N----KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 82 (442)
Q Consensus 14 ~fd~~L~~~Ae~---~Gvei~~g~~v~~i~~~~~----g----~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~Ad 82 (442)
.+-+.|.+.+++ .||+|+.+++|++++.+++ | +|+||...+.+ +.+|+ ...|+||.||+|+
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~-------~~~i~AkaVILAT 616 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQ-------VMDLLADAVILAT 616 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCc-------EEEEEeceEEEec
Confidence 355677777765 4999999999999998752 3 79999876410 11442 2579999999999
Q ss_pred CCCCccc
Q 013495 83 GCRGSLS 89 (442)
Q Consensus 83 G~~s~la 89 (442)
|-.+.-.
T Consensus 617 GGf~~N~ 623 (1167)
T PTZ00306 617 GGFSNDH 623 (1167)
T ss_pred CCcccCc
Confidence 9987653
No 310
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=94.44 E-value=0.024 Score=52.44 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=22.8
Q ss_pred eEEEecCCCccCCcccccCCCCCee
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
++.++.++|++||.|..+||.++|.
T Consensus 56 ~i~~~~~kCi~Cg~C~~aCP~~ai~ 80 (183)
T TIGR00403 56 RIHFEFDKCIACEVCVRVCPINLPV 80 (183)
T ss_pred eEEeCcccCcCcCChhhhCCCCccc
Confidence 6889999999999999999999863
No 311
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=94.42 E-value=0.11 Score=56.34 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred EEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 8 NRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 8 y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
=+++-.-+++.|+..|++.||.|+.++.|++|..+.++ +.||.|.. ..|++..+|.|.|.+++
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~----------------G~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPH----------------GSIETECVVNAAGVWAR 244 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccC----------------cceecceEEechhHHHH
Confidence 36778889999999999999999999999999887744 56999863 37999999999999964
Q ss_pred c
Q 013495 88 L 88 (442)
Q Consensus 88 l 88 (442)
.
T Consensus 245 ~ 245 (856)
T KOG2844|consen 245 E 245 (856)
T ss_pred H
Confidence 3
No 312
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.42 E-value=0.016 Score=47.18 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=23.4
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
...++.+.|+.||.|..+||+++|..
T Consensus 23 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 23 KLVIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred eEEeCccccCCCCCchhhCCHHHhhc
Confidence 45788999999999999999999876
No 313
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=94.37 E-value=0.0071 Score=66.81 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCCCCcccCCCCCccccccccccceE-----EEecCCCCc-eeEEEecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVY-----EYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y-----~~~~~~~~~-~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+.+.|+.| +.|.++||.+.. ....+ +. ..+..+...|+.||.|..+||++.
T Consensus 402 eadrCI~C------G~Cv~aCP~~l~i~~~I~~a~~--G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 402 LAKKCTEC------GWCVRVCPNELPIPEAMEAAAK--GDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhhCcCC------CCccccCCCCcchhHHHHHHhc--CChhhhhhhhhhccchhHHhhhCCCCC
Confidence 46889998 789999998631 11111 11 123455689999999999999864
No 314
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.27 E-value=0.037 Score=64.21 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=40.1
Q ss_pred CeEecCCCCCcccCCCCCcccccc--ccccceEEEecCCCCceeEEEecCCCccCCcccc-cCCC
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDI-KDPK 423 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~-~cp~ 423 (442)
++.| |+++|++| +-|.. -||+ ++..+++-| +|..||.+.|..|+.|.. .||.
T Consensus 623 ~~~I-n~~vCegC------g~C~~~s~C~a--i~~~~t~~g-rK~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 623 RLFI-NEAVCEGC------GDCGVQSNCLS--VEPVETPFG-RKRRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred eEEE-cccccCCc------hhhhhccCCcc--eeeccccCC-ccEEECHHHCCCccccccCCCCC
Confidence 4444 88999999 78965 7987 344443323 379999999999999999 9994
No 315
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=94.24 E-value=0.019 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
++.+|.++|++|+.|..+||.++|..
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~ 78 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILS 78 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEe
Confidence 68899999999999999999999864
No 316
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=94.23 E-value=0.023 Score=48.80 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=24.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.+.++.++|++||.|..+||.++|.+.
T Consensus 36 ~i~i~~~~Ci~C~~C~~~CP~~ai~~~ 62 (120)
T PRK08348 36 KILYDVDKCVGCRMCVTVCPAGVFVYL 62 (120)
T ss_pred eEEECcccCcCcccHHHHCCccceEcc
Confidence 688999999999999999999998765
No 317
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=94.21 E-value=0.16 Score=53.42 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.++-+.|++.++..|++++.+++|.+|..+++|++++|++.+ |.+++|+.||......
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECcccc
Confidence 478888999999999999999999999988768889998864 5689999999855443
No 318
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=94.20 E-value=0.025 Score=62.17 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=42.8
Q ss_pred ccCCCCCCeEecCCCCCcccCCCCCccccccccc--cceEEEecCCCC-ceeEEEecCCC---ccCCcccccCCCCCee
Q 013495 355 HEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCP--ARVYEYVPDEKN-QLKLQINAQNC---LHCKACDIKDPKQNIK 427 (442)
Q Consensus 355 ~~~d~~~Hl~v~d~~~c~~~~~~~~~~~c~~~CP--a~~y~~~~~~~~-~~~~~i~~~~C---i~Cg~C~~~cp~~~I~ 427 (442)
|++....++.+.|.+.|+.| ..|+|+|= +|..++.--+.| ...+.--.+.+ ..||.|+..||++|++
T Consensus 130 ~~~~~~gp~v~~dm~RCI~C------~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt 202 (693)
T COG1034 130 HRDKDLGPLVKYDMNRCILC------TRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALT 202 (693)
T ss_pred cccccccchhhcccccceec------hhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccc
Confidence 44445566766899999999 68999994 554443211111 11222222233 5799999999999985
No 319
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.15 E-value=0.12 Score=55.12 Aligned_cols=56 Identities=30% Similarity=0.372 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 84 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~ 84 (442)
..+-+.|++.|++.|++|+++++|++|+.++ |+.++|++.+ +..+.||.||.+-..
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc---------------cceeccceeEecCch
Confidence 5788999999999999999999999999987 6667777663 357899999977666
No 320
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=94.12 E-value=0.035 Score=44.78 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=25.0
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++.+|++.|+.|+.|.+-||-.+|.+.
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~ 55 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEE 55 (91)
T ss_pred eeEEcccccccCceeEEECCchheeec
Confidence 688999999999999999999998765
No 321
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.12 E-value=0.17 Score=54.80 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEc-EEEeccCCCCcccHHH
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 92 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak-~vI~AdG~~s~lar~l 92 (442)
.+-..|.+.+++.|++|+++++|++++.++ ++|+||.... +|+ ..+|+|+ .||+|+|..+.- +.+
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~n-~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEHN-EQM 274 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCcC-HHH
Confidence 356677788889999999999999999875 7899998642 231 3579996 699999987663 344
Q ss_pred HHhc
Q 013495 93 IKNF 96 (442)
Q Consensus 93 ~~~~ 96 (442)
++.+
T Consensus 275 ~~~~ 278 (557)
T PRK07843 275 RAKY 278 (557)
T ss_pred HHHh
Confidence 4433
No 322
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.10 E-value=1.1 Score=45.35 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=33.2
Q ss_pred cCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 215 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 215 ~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
.|++.++||++.+-+....+=...|+..|..||+.|...+.+
T Consensus 271 ~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 271 HPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 388999999998865444433467999999999999888765
No 323
>PLN02815 L-aspartate oxidase
Probab=94.04 E-value=0.14 Score=55.94 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCC---cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEEL-GVEIYPGFAASEILYDADN---KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g---~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+++++. |++|+.++.+++++.+++| +|+||...+. .+|+ -..++||.||+|+|-.+.+
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDT---RTGE-------VVRFISKVTLLASGGAGHI 224 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEc---CCCe-------EEEEEeceEEEcCCcceee
Confidence 4677888888775 9999999999999986544 3889976421 2332 2578999999999987654
No 324
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=94.01 E-value=0.011 Score=65.28 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred CCCCCcccCCCCCccccccccccceEE---EecCCCCc-eeEEEecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYE---YVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~---~~~~~~~~-~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
..+.|+.| +.|+++||.+.-. +....++. ..+......|..||.|..+||+++
T Consensus 363 ~~~kCI~C------G~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 363 LAAKCTDC------GWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred hhhcCCCC------CcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 46889998 7899999987320 00011121 122334689999999999999876
No 325
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=93.99 E-value=0.18 Score=55.30 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCC--CcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDAD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~--g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+.+.|...+++.+++|+.++.|++++.+++ |+|+||...+. .+|+ -..++||.||+|+|..+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~---~~g~-------~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV---RANE-------VHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe---CCCc-------EEEEECCEEEECCCcccc
Confidence 4556677777778899999999999998753 78999976431 2332 257999999999999864
No 326
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=93.95 E-value=0.048 Score=63.20 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=40.3
Q ss_pred CeEecCCCCCcccCCCCCcccccc--ccccceEEEecCCCCceeEEEecCCCccCCcccc-cCCC
Q 013495 362 HLRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDI-KDPK 423 (442)
Q Consensus 362 Hl~v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~-~cp~ 423 (442)
++.| |+++|++| +-|.. -||+ ++..+++-| +|..||.+.|..|+.|.. .||.
T Consensus 637 r~~I-n~~vCegC------gdC~~~s~C~a--i~p~~t~~g-rK~~Idqs~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 637 RVFI-NEAVCEGC------GDCSVKSNCLS--VEPVETEFG-RKRRIDQSSCNKDFSCLKGFCPS 691 (1165)
T ss_pred eEEE-cccccCCc------hhhhhccCCcc--eeeccccCC-ccEEECHhHCCCccccccCCCCC
Confidence 4444 89999999 78965 7998 344443323 379999999999999999 9995
No 327
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=93.94 E-value=0.015 Score=60.85 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=30.0
Q ss_pred cccccccccceEE--EecCCCCceeEEEe---------------------cCCCccCCcccccCCCCCee
Q 013495 381 GPESRYCPARVYE--YVPDEKNQLKLQIN---------------------AQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 381 ~~c~~~CPa~~y~--~~~~~~~~~~~~i~---------------------~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
..|..+||.+++. +-+.+.. .+..| .+.|++|+.|..+||++ |.
T Consensus 182 ~~C~~~CP~g~~qs~m~d~~tl--~v~yd~~Rgepr~~~~~~~~~~~~~~~~~Ci~C~~Cv~vCP~g-i~ 248 (434)
T TIGR02745 182 QFCIYMCPYARIQSVMFDKDTL--IVVYDEKRGEPRGPRKGKKDPKAPGPLGDCIDCNLCVQVCPTG-ID 248 (434)
T ss_pred chhhhhCCHHHHHHHhccCCcc--eEecccccCCcCccccccccccCCCCCCCCCChhhhHHhCCCC-CE
Confidence 4799999999876 1121111 22222 46899999999999988 54
No 328
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.89 E-value=0.012 Score=61.72 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=32.7
Q ss_pred CCcccCCCCCccccccccccceEEE-----ecCCCCceeEEEecCCCccCCcccccCCCC
Q 013495 370 IPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 370 ~c~~~~~~~~~~~c~~~CPa~~y~~-----~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
.|..| +.|+.+||++..-. ...++-.....-+...|+|||.|..+||..
T Consensus 366 sCi~C------~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 366 SCIRC------SLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred ccccH------HHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC
Confidence 78888 68999999876421 000000112333568899999999999953
No 329
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.86 E-value=0.12 Score=56.10 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH-CCcEEecCCeEeEEEEcC-CCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAEE-LGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~-~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+-..|.+++++ .|++|+.++.|++++.++ +|+|+||.+.+ +|. ...++||.||+|+|..+.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-----~g~-------~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY-----QGQ-------ITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE-----CCe-------EEEEEcCEEEEcCCCCcc
Confidence 466677888876 499999999999999874 48899997642 231 246899999999998654
No 330
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=93.84 E-value=0.027 Score=57.79 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=30.1
Q ss_pred CCcccCCCCCcccccccccc------ceEEEec-CCCCc-eeEEE--------ecCCCccCCcccccCCCC
Q 013495 370 IPELVNLPEYAGPESRYCPA------RVYEYVP-DEKNQ-LKLQI--------NAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 370 ~c~~~~~~~~~~~c~~~CPa------~~y~~~~-~~~~~-~~~~i--------~~~~Ci~Cg~C~~~cp~~ 424 (442)
.|+.| |.|..+||+ .+|...- +.-|. +...+ ...-|.+||.|.-+||.+
T Consensus 309 ~CIRC------GaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~ 373 (459)
T COG1139 309 RCIRC------GACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVK 373 (459)
T ss_pred Hhhcc------hHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCC
Confidence 59998 899999996 1221110 10010 11111 246799999999999954
No 331
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=93.82 E-value=0.015 Score=42.05 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=16.5
Q ss_pred CCccCCcccccCCCCCeeEECcC
Q 013495 410 NCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 410 ~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
+|++||.|..+||.++|++....
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~ 23 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEE 23 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETT
T ss_pred CCCCcCchHHhcCccccCccccc
Confidence 69999999999999999988553
No 332
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=93.78 E-value=0.056 Score=62.59 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=39.3
Q ss_pred ecCCCCCcccCCCCCcccccc--ccccceEEEecCCCCceeEEEecCCCccCCcccc-cCCC
Q 013495 365 LRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDI-KDPK 423 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~--~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~-~cp~ 423 (442)
++|+++|++| +-|.. -||+ ++..+++-| +|..||.+.|..|+.|.. .||.
T Consensus 653 ~In~~vCeGC------gdC~~~snC~a--i~p~et~~g-rK~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 653 FINELVCEGC------GDCSVQSNCLA--VQPVETEFG-RKRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred EEcccccCCc------hhhhhccCCce--eeeccccCC-ccEEECHhHCCCccccccCCCCC
Confidence 3488999999 78965 7987 344444334 379999999999999998 9996
No 333
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=93.74 E-value=0.028 Score=54.63 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=34.2
Q ss_pred CCCCCcccCCCCCccccccccccceEE-----------EecC-CCC-----cee---EE-EecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYE-----------YVPD-EKN-----QLK---LQ-INAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~-----------~~~~-~~~-----~~~---~~-i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+...|+.| |.|..+||+.+.. +... .+. ... +. ....+|++||.|..+||.+.
T Consensus 155 ~~~~CI~C------G~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 155 DAAACIGC------GACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCTNTGECEAVCPKGI 228 (250)
T ss_pred CccccCCC------cccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCcccCccccccCCCC
Confidence 56899999 8999999997432 1110 000 000 11 22467999999999999753
No 334
>PRK06273 ferredoxin; Provisional
Probab=93.66 E-value=0.022 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=24.8
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
...++.+.|++||.|..+||.++|.+.
T Consensus 43 ~~~id~~~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 43 PKKVFEELCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred CCeECchhCcChhHHHHhcCccceeee
Confidence 567899999999999999999999876
No 335
>PLN02576 protoporphyrinogen oxidase
Probab=93.65 E-value=4.5 Score=42.86 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhh
Q 013495 216 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 254 (442)
Q Consensus 216 ~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al 254 (442)
+|+.++||.-. +-||.-||.||..||+.|...+
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~~ 487 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISYL 487 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHHH
Confidence 79999999885 5599999999999999998765
No 336
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=93.63 E-value=0.021 Score=60.00 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=35.5
Q ss_pred CCCCCcccCCCCCccccccccccceEEE-----ecCCCCceeEEEecCCCcc--CCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLH--CKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~-----~~~~~~~~~~~i~~~~Ci~--Cg~C~~~cp~~ 424 (442)
....|+.| +.|+++||.+.+=. ....+-...-..+-..|++ ||.|..+||..
T Consensus 372 ~~~~CI~C------g~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPsk 430 (448)
T PRK05352 372 SERAMVPI------GNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPGK 430 (448)
T ss_pred CCcceeec------CcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCCC
Confidence 35789998 79999999976521 0100001122367789999 99999999954
No 337
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.56 E-value=0.22 Score=54.85 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHC--------C-----cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEe
Q 013495 14 QLVRWLGGKAEEL--------G-----VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLL 80 (442)
Q Consensus 14 ~fd~~L~~~Ae~~--------G-----vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~ 80 (442)
.+-+.|.+++++. | ++|+.++.|++++.++ |+|+||...+. .+|+ ...++||.||+
T Consensus 139 ~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVl 207 (626)
T PRK07803 139 ELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWR---ESGR-------FVLFEAPAVVL 207 (626)
T ss_pred HHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEEC---CCCe-------EEEEEcCeEEE
Confidence 5667788888777 8 9999999999999874 88999875321 2232 24799999999
Q ss_pred ccCCCCcc
Q 013495 81 AEGCRGSL 88 (442)
Q Consensus 81 AdG~~s~l 88 (442)
|+|..+.+
T Consensus 208 ATGG~~~~ 215 (626)
T PRK07803 208 ATGGIGKS 215 (626)
T ss_pred CCCcccCC
Confidence 99985543
No 338
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=93.45 E-value=0.018 Score=51.13 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCCcccCCCCCccccccccccce---EEEec----CCCC-ceeEEE--ecCCCccCCcccccCCCCC
Q 013495 369 KIPELVNLPEYAGPESRYCPARV---YEYVP----DEKN-QLKLQI--NAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~---y~~~~----~~~~-~~~~~i--~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+.|+.| +.|..+||+.. |.... ...+ ...+.. ....|..||.|..+||.+.
T Consensus 2 ~~Ci~C------G~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 2 KACYQC------GTCTGSCPSGRRTSYRTRLIIRKALLGLKDEVISDDDLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred ccccCC------CCCcCcCCCccccCCCHHHHHHHHHccchhhhccCCCCCcCcCcCchhhhcCCCC
Confidence 468898 79999999742 11000 0001 001111 2247999999999999754
No 339
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.36 E-value=0.4 Score=49.39 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.+-..|..++++.||+|+.+++|.+| ++++ ..|.+.. .+.+++|+.||+|+|..|
T Consensus 87 sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~--~~v~~~~--------------~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 87 PLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT--LRFETPD--------------GQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc--EEEEECC--------------CceEEecCEEEEcCCCcc
Confidence 46667888999999999999999998 3323 4566542 124699999999999876
No 340
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=93.36 E-value=0.02 Score=54.44 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=33.3
Q ss_pred CCCCCcccCCCCCccccccccccceEE--------------EecCC-C--Ccee---E--EEecCCCccCCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYE--------------YVPDE-K--NQLK---L--QINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~--------------~~~~~-~--~~~~---~--~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
+...|+.| +.|..+||+.... +..+. + ...+ . ..+..+|+.||.|..+||.+
T Consensus 136 ~~~~Ci~C------G~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 136 QLSGCILC------GCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred hhhhcccc------ccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCC
Confidence 46899999 7999999985211 10110 0 0001 1 12446799999999999974
No 341
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.32 E-value=0.047 Score=39.71 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=17.6
Q ss_pred CCccCCcccccCCCCCeeEECcCC
Q 013495 410 NCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 410 ~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
+|++||.|..+||.++|.+..-.+
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~ 24 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGG 24 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTT
T ss_pred CCCCcchHHHHCCccCeEccCccc
Confidence 699999999999999988765443
No 342
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.26 E-value=1.5 Score=45.70 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=32.1
Q ss_pred cCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 215 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 215 ~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
.|++..+||++.+-++....=...|+..|..||+.|...+.+
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 378999999998754322223467999999999999887754
No 343
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=93.26 E-value=0.07 Score=53.50 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=29.8
Q ss_pred cccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCee
Q 013495 387 CPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 387 CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
+|...+.+....-...++.+|.++|++|+.|...||..+|.
T Consensus 225 ~~g~~~~~~~~~~~~~~p~id~~~Ci~C~~C~~~CP~~ai~ 265 (312)
T PRK14028 225 FPGSSFPYLTGGWRIDKPVIDHSKCIMCRKCWLYCPDDAII 265 (312)
T ss_pred cCccceecccCCccccceEECcccCcCcccccccCChhhhh
Confidence 67666554332101126889999999999999999999984
No 344
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=93.23 E-value=0.34 Score=48.77 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=51.9
Q ss_pred cCCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEc-CCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~-~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
+||| +.-.+--+.|...|+++||.++.|..|..+.+. +++.+++|+|.+ |..+.||-+|+|.|
T Consensus 146 ~gGv-i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~G 209 (399)
T KOG2820|consen 146 SGGV-INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVG 209 (399)
T ss_pred cccE-eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEec
Confidence 4554 444555677889999999999999999888753 346788999985 46799999999999
Q ss_pred CC
Q 013495 84 CR 85 (442)
Q Consensus 84 ~~ 85 (442)
++
T Consensus 210 aW 211 (399)
T KOG2820|consen 210 AW 211 (399)
T ss_pred HH
Confidence 97
No 345
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=93.15 E-value=0.053 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=24.4
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
.+.+|.+.|+.||.|..+||.++|.+
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~a~~~ 67 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAGTARL 67 (295)
T ss_pred eEEEccccCCCCchhhhhCccccccc
Confidence 78999999999999999999999874
No 346
>PLN00071 photosystem I subunit VII; Provisional
Probab=92.96 E-value=0.042 Score=43.58 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=23.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..+++.++|+.|+.|..+||.++|++.
T Consensus 3 ~~~~~~~~C~~C~~C~~~CP~~~i~~~ 29 (81)
T PLN00071 3 HPVKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred CCeEcCCcCcChhHHHHHCCccceeee
Confidence 357788999999999999999998865
No 347
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=92.94 E-value=0.32 Score=51.64 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=51.7
Q ss_pred CCEEEe--hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 6 NGNRKS--LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 6 ~~y~v~--R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
|.|.+. ...+-+.|++.+++.|++|+.+++|++|+.++ +++.+|++.+. .+| .+.++.||.||.+.-
T Consensus 223 G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~---~~~-------~~~~~~ad~VI~~~~ 291 (492)
T TIGR02733 223 GLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDS---RKQ-------EDLNVKADDVVANLP 291 (492)
T ss_pred CceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecC---CCC-------ceEEEECCEEEECCC
Confidence 444444 45788899999999999999999999999886 56777876530 011 125799999998877
Q ss_pred CC
Q 013495 84 CR 85 (442)
Q Consensus 84 ~~ 85 (442)
..
T Consensus 292 ~~ 293 (492)
T TIGR02733 292 PQ 293 (492)
T ss_pred HH
Confidence 64
No 348
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=92.85 E-value=0.069 Score=53.95 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=37.5
Q ss_pred CCCCcccCCCCCccccccccccc-eEEEecC---CCC----------------------------------------c--
Q 013495 368 PKIPELVNLPEYAGPESRYCPAR-VYEYVPD---EKN----------------------------------------Q-- 401 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~-~y~~~~~---~~~----------------------------------------~-- 401 (442)
.+.|+.| +.|..+||+= ||.+.+. .+| +
T Consensus 219 ~~rCi~C------~~C~~~CPtC~Cf~i~D~~~~~~g~~geR~R~WDSC~~~~Ft~~agGhn~R~~~~~R~R~r~~HKl~ 292 (334)
T TIGR02910 219 DSRCIAC------GRCNTVCPTCTCFSMQDVFYKDNPKAGERRRVWASCMVDGFTNMAGGHGFREKKGQRMRFKVMHKVN 292 (334)
T ss_pred HhhCCcC------ccccccCCceEeeEEEEecccCCCCceEEEEEecccCCcchhhhcCCCCCCCCHHHHHHHHHhhhcc
Confidence 5789999 7999999974 7777543 111 0
Q ss_pred -eeEEEecCCCccCCcccccCCCC
Q 013495 402 -LKLQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 402 -~~~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
..-++....|++||.|+.+||.+
T Consensus 293 ~~~~~fG~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 293 DYKKRNGYHMCVGCGRCDDICPEY 316 (334)
T ss_pred ccccccCccccCCcCchhhhCCCC
Confidence 11245678899999999999965
No 349
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.74 E-value=0.57 Score=49.18 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=61.0
Q ss_pred cCCEEEehHHHHHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 5 HNGNRKSLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
..+.-|+-..+.+-|.+.+++. |++++.++.|++|.+.+||. +.|.+.+. ++|+ ..+++||+|++..|
T Consensus 173 ~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~---~~~~-------~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 173 EEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDL---KTGE-------KREVRAKFVFVGAG 241 (488)
T ss_pred CCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEec---CCCC-------eEEEECCEEEECCc
Confidence 3455788899999999999988 99999999999999998883 34444331 2332 36899999999888
Q ss_pred CCCcccHHHHHhcCCc
Q 013495 84 CRGSLSEKLIKNFKLR 99 (442)
Q Consensus 84 ~~s~lar~l~~~~gl~ 99 (442)
..|. .|+++.|+.
T Consensus 242 G~aL---~LLqksgi~ 254 (488)
T PF06039_consen 242 GGAL---PLLQKSGIP 254 (488)
T ss_pred hHhH---HHHHHcCCh
Confidence 8743 355567775
No 350
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=92.49 E-value=0.0013 Score=48.33 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCCcccCCCCCccccccccccceEEEe--cCCCCce-e-EEEecCCCccCCcccccCCCC
Q 013495 369 KIPELVNLPEYAGPESRYCPARVYEYV--PDEKNQL-K-LQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~y~~~--~~~~~~~-~-~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
+.|+.| +.|..+||+....-. ....+.. . +.-....|+.||.|..+||.+
T Consensus 3 ~~Ci~C------g~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 3 SKCIRC------GACTSVCPVYRNTGRFSHPPRDRRSAVLREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HC--S-------SHHHHCSHHHHHHHHHHTSTTS--HHHHHHHHGG-----HHHHH-TT-
T ss_pred HHccCc------cChHHHChhhhcccccccCcchhHHHhhcccccCCcCcCCccCcCccc
Confidence 468888 899999996432211 1111100 0 001127999999999999964
No 351
>CHL00065 psaC photosystem I subunit VII
Probab=92.48 E-value=0.035 Score=44.08 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.7
Q ss_pred EEEecCCCccCCcccccCCCCCeeEE
Q 013495 404 LQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 404 ~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..++.++|++|+.|..+||+++|++.
T Consensus 4 ~~~~~~~Ci~Cg~C~~~CP~~~i~~~ 29 (81)
T CHL00065 4 SVKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred ccCccccCCChhHHHHHCCccchhhe
Confidence 45578899999999999999998875
No 352
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=92.47 E-value=0.075 Score=40.93 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=35.6
Q ss_pred EecCCCCCcccCCCCCccccccccccceEEEecCCCCceeE----EEecC------CCccCCcccccCCCCCeeEE
Q 013495 364 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKL----QINAQ------NCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 364 ~v~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~----~i~~~------~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++.|.+.|+.| +.|..+||- +|++.++ |...+ ....+ .|++ -=...||+++|+|.
T Consensus 3 v~vDrd~Cigc------g~C~~~aPd-vF~~~d~--G~a~~~~~~~~~~~~~~e~~~~~~--~A~~~CP~~aI~v~ 67 (68)
T COG1141 3 VIVDRDTCIGC------GACLAVAPD-VFDYDDE--GIAFVLDGNIGEGEVPEELEEDAE--DAAEACPTDAIKVE 67 (68)
T ss_pred EEechhhcccc------chhhhcCCc-ceeeCCC--cceEeccCccccccCChHHHHHHH--HHHHhCCccceEec
Confidence 34588999998 799999996 6777654 42211 11111 2322 22468999999985
No 353
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=92.45 E-value=0.005 Score=46.02 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=22.2
Q ss_pred CcccCCCCCccccccccccceEEEec----------CCCCceeEEEecCCCccCCcccccCCCC
Q 013495 371 PELVNLPEYAGPESRYCPARVYEYVP----------DEKNQLKLQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 371 c~~~~~~~~~~~c~~~CPa~~y~~~~----------~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
|+.| +.|..+||.+...-.+ ++.....-......|++||.|..+||.+
T Consensus 2 C~~C------g~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 2 CTQC------GYCVPACPSYIATPDEPRSPMRAIYLGKIDEISESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp ----------STTGGGSHHHHHCTTTHHHHHHHHHHCHCHTTHHHTTTTT--S--HHHHH-TT-
T ss_pred CCCC------CcCcccCCCccccCccHHHHHHHHHHhcchhhhhCcccccCcCcCcCcccccCC
Confidence 6777 7899999987651100 0000000114568999999999999964
No 354
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.43 E-value=0.092 Score=55.59 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHH
Q 013495 12 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 91 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~ 91 (442)
=++++-.++--|.+.||.+..-+.|.+++.+++|+|+|++..|. -.|+ ..+|+||.||-|+|..+---|+
T Consensus 223 DaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~-------e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 223 DARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGK-------EYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred hHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCc-------EEEEEEEEEEeCCCCccHHHHh
Confidence 35667778888999999999999999999999999999988762 3443 4789999999999998654454
No 355
>PLN02268 probable polyamine oxidase
Probab=92.42 E-value=3.4 Score=42.94 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=29.0
Q ss_pred CCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhh
Q 013495 216 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 254 (442)
Q Consensus 216 ~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al 254 (442)
+++.++|++.....+ .=|+-|+.||+.||+.|.+.|
T Consensus 399 ~~l~FAGe~ts~~~~---g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 399 DNLFFAGEATSSDFP---GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCeEEeeccCCCccc---ccHHHHHHHHHHHHHHHHHhh
Confidence 479999999876543 346779999999999998765
No 356
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=92.38 E-value=0.062 Score=42.55 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=24.5
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEEC
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
+++.+.+.|+.|+.|..+||.++|.+..
T Consensus 2 ~~~~~~~~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 2 HSVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred cceecCCcCcCcchHHHHCCccceeeec
Confidence 4677899999999999999999988764
No 357
>PLN02568 polyamine oxidase
Probab=92.35 E-value=5.9 Score=42.89 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=28.8
Q ss_pred CEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhh
Q 013495 217 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 254 (442)
Q Consensus 217 g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al 254 (442)
+++++|.|...-.+-+ ||-|+.||..||+.|++..
T Consensus 501 ~l~FAGEat~~~~~~T---v~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 501 QLLFAGEATHRTHYST---THGAYFSGLREANRLLQHY 535 (539)
T ss_pred cEEEeecccCCCccch---HHHHHHHHHHHHHHHHHHh
Confidence 6999999987765544 6669999999999998754
No 358
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=92.28 E-value=0.069 Score=48.87 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=22.8
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
...++.+.||.|+.|..+||.+||+..
T Consensus 49 ~~~l~~~~CIgC~lCa~iCP~~aI~m~ 75 (172)
T COG1143 49 RHVLDRDKCIGCGLCANICPANAITME 75 (172)
T ss_pred eeeccccCCcchhHHHhhCCcCceEEE
Confidence 456666779999999999999999754
No 359
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.24 E-value=0.059 Score=52.47 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=25.7
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEECcCC
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWTVPEG 433 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~g 433 (442)
...||.+.|+.||.|..+|+++||.| .|.+
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~-~~~~ 92 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVV-LPGG 92 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEE-cCCC
Confidence 57788999999999999999999987 4443
No 360
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=92.24 E-value=0.23 Score=48.69 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHC-CcEEecCCeEeEEEEc-CCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHH
Q 013495 14 QLVRWLGGKAEEL-GVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 91 (442)
Q Consensus 14 ~fd~~L~~~Ae~~-Gvei~~g~~v~~i~~~-~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~ 91 (442)
-...||. .|.+. +++|++++.|..|+++ ++++++||+..+ .++. .....+.||.||+|.|+-.+ -+
T Consensus 194 ~~~~~L~-~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~-----~~~~~~~ak~VIlaAGai~T--p~ 261 (296)
T PF00732_consen 194 AATTYLP-PALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGG-----VQRRIVAAKEVILAAGAIGT--PR 261 (296)
T ss_dssp HHHHHHH-HHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTS-----EEEEEEEEEEEEE-SHHHHH--HH
T ss_pred hhhcccc-hhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCc-----ceeeeccceeEEeccCCCCC--hh
Confidence 3444555 45555 9999999999999886 447899999875 3332 01257889999999997433 34
Q ss_pred HHHhcCC
Q 013495 92 LIKNFKL 98 (442)
Q Consensus 92 l~~~~gl 98 (442)
|+.+-|+
T Consensus 262 LLl~SGi 268 (296)
T PF00732_consen 262 LLLRSGI 268 (296)
T ss_dssp HHHHTTE
T ss_pred hhccccc
Confidence 5445566
No 361
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=92.19 E-value=0.11 Score=47.17 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=22.8
Q ss_pred eEEEecC-----CCccCCcccccCCCCCeeEEC
Q 013495 403 KLQINAQ-----NCLHCKACDIKDPKQNIKWTV 430 (442)
Q Consensus 403 ~~~i~~~-----~Ci~Cg~C~~~cp~~~I~w~~ 430 (442)
.+.++.+ +|+.|+.|..+||.++|.+..
T Consensus 47 ~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~ 79 (164)
T PRK05888 47 RHALRRDPNGEERCIACKLCAAICPADAITIEA 79 (164)
T ss_pred EEeecCCCCCCccCCcccChHHHcCcccccccc
Confidence 4555555 999999999999999987654
No 362
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.15 E-value=0.6 Score=48.92 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
.++-+.|.+..++.|++|+++++|.++..++ +.|..|.+.+ |+ ..+++|+.||.|+|+.
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRN------HG-------DIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeC------Cc-------eEEEECCEEEEeCCCc
Confidence 3677888898999999999999999998775 5666665432 21 3579999999999975
No 363
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=92.15 E-value=0.037 Score=41.23 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCc----cCCcccccCCCCCeeE
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCL----HCKACDIKDPKQNIKW 428 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci----~Cg~C~~~cp~~~I~w 428 (442)
|.+.|+.| +.|...||. +|+++++ ++ ..+.++...-- .+..-...||+++|+|
T Consensus 2 D~~~Ci~C------g~C~~~aP~-vF~~~d~-~~-~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 2 DRDKCIGC------GLCVEIAPD-VFDYDDD-GG-KAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp -TTT--S-------SHHHHH-TT-TEEEETT-ST-EEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred ChhhCcCC------ChHHHhCcH-heeEcCC-CC-eEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 67899998 789999996 8888775 22 22222322221 2556678899999986
No 364
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=91.90 E-value=0.042 Score=54.27 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=34.2
Q ss_pred cCCCCCcccCCCCCccccccccccceEE--E--------------ecCCCCc-eeE---EEecCCCccCCcccccCCCCC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYE--Y--------------VPDEKNQ-LKL---QINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~--~--------------~~~~~~~-~~~---~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
.+.+.|+.| +.|..+||+..+. + +..+.+. .++ .-+...|+.||.|..+||.+.
T Consensus 149 ~~~~~CI~C------G~C~~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 149 WKFAQCIWC------GLCVSACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred hcchhCccc------CcccccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCCC
Confidence 456899999 7999999985431 0 0000000 011 113368999999999999643
No 365
>PLN02529 lysine-specific histone demethylase 1
Probab=91.88 E-value=5 Score=45.10 Aligned_cols=38 Identities=21% Similarity=0.051 Sum_probs=31.2
Q ss_pred cCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhc
Q 013495 215 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH 255 (442)
Q Consensus 215 ~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~ 255 (442)
.+++.++||+.....|-+. +-|+.||+.||+.|.+.+.
T Consensus 562 ~grL~FAGEaTs~~~pgtV---eGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATM---HGAFLSGLREASRILHVAR 599 (738)
T ss_pred CCCEEEEEHHHhCCCCeEe---HHHHHHHHHHHHHHHHHHh
Confidence 4689999999887776555 4599999999999987664
No 366
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=91.87 E-value=0.06 Score=55.70 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=32.7
Q ss_pred CCCCcccCCCCCccccccccccceEE---Ee-cCC--CCc-------eeEEEecCCCccCCcccccCCCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYE---YV-PDE--KNQ-------LKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~---~~-~~~--~~~-------~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
.+.|+.| |.|..+||+--.. .. +.. ++. ..+.-..+.|+.||.|..+||.+.
T Consensus 4 ~~~Ci~C------g~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 4 FESCIKC------TVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred hhhCCCC------CCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCCC
Confidence 4789999 8999999974211 00 000 010 011123569999999999999753
No 367
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=91.75 E-value=0.035 Score=53.73 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCCCCcccCCCCCccccccccccceE--------------EEecCC--CC-ceeEE-----EecCCCccCCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVY--------------EYVPDE--KN-QLKLQ-----INAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y--------------~~~~~~--~~-~~~~~-----i~~~~Ci~Cg~C~~~cp~~ 424 (442)
+.+.|+.| +.|..+||+-.. .+..++ .+ ..++. -.-.+|.+||.|..+||.+
T Consensus 145 ~~~~CI~C------g~C~saCP~~~~~~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 145 QFSGCINC------GLCYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred HHHhcCcC------ccccCcCcCcccCCCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCC
Confidence 45789998 899999998321 111110 00 00111 1224999999999999964
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.54 E-value=0.58 Score=49.61 Aligned_cols=67 Identities=24% Similarity=0.222 Sum_probs=46.4
Q ss_pred HHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 19 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 19 L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+.+++.||++++++.++++.-+ +|+|.+|+...+.. .+|.+...-....++.++.||.|.|....
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~-~~g~~~~~~g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTEL-GEGDFEPVEGSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEe-cCCCccccCCceEEEECCEEEECcCcCCC
Confidence 567788999999999999999754 47888887654322 23321111112367999999999997643
No 369
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.48 E-value=0.052 Score=57.03 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=35.1
Q ss_pred CCCCCcccCCCCCccccccccccceEEE-----ecCCCCceeEEEecCCCcc--CCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEY-----VPDEKNQLKLQINAQNCLH--CKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~-----~~~~~~~~~~~i~~~~Ci~--Cg~C~~~cp~~ 424 (442)
...-|+.| +.|+++||.+.+=. ...++-...-..+--.|++ ||.|..+||..
T Consensus 371 ~~~aCI~C------G~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPSk 429 (447)
T TIGR01936 371 GERAMIPI------GIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPSK 429 (447)
T ss_pred CccceeEC------ChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCCC
Confidence 35679998 89999999987521 0110111123345678999 99999999954
No 370
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=91.42 E-value=0.04 Score=41.89 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.9
Q ss_pred CCccCCcccccCCCCCeeEE
Q 013495 410 NCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 410 ~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
+|..||.|..+||++||+-.
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGE 20 (67)
T ss_pred CCcchhHHHHhCcHhhccCC
Confidence 59999999999999999644
No 371
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=91.30 E-value=0.14 Score=51.97 Aligned_cols=16 Identities=31% Similarity=0.827 Sum_probs=14.3
Q ss_pred CCCccCCcccccCCCC
Q 013495 409 QNCLHCKACDIKDPKQ 424 (442)
Q Consensus 409 ~~Ci~Cg~C~~~cp~~ 424 (442)
..|+.||.|..+||.+
T Consensus 307 ~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 307 HMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhCcCcCccccccCCC
Confidence 5799999999999964
No 372
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=91.24 E-value=0.091 Score=44.09 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=24.0
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.+.+|.+.|++|+.|..+||.++|...
T Consensus 45 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09624 45 MPEFNRDKCVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred EEEEChhHCcChhhHHhhCCHhhEEec
Confidence 467899999999999999999998764
No 373
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=91.24 E-value=0.12 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=19.5
Q ss_pred cCCCccCCcccccCCCCCeeEE
Q 013495 408 AQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..+|++|+.|..+||.++|...
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~ 63 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVV 63 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeee
Confidence 3899999999999999988755
No 374
>COG1146 Ferredoxin [Energy production and conversion]
Probab=91.23 E-value=0.13 Score=39.42 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.4
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEECcC
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
...||+++|..|+.|..+||...+.|..-+
T Consensus 2 ~~~Id~~~C~~c~~C~~~CP~~~~~~~~~~ 31 (68)
T COG1146 2 EIVIDYDKCIGCGICVEVCPAGVFDLGEDE 31 (68)
T ss_pred ceEECchhcCCCChheeccChhhEEecccc
Confidence 467999999999999999999999887554
No 375
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=91.18 E-value=0.081 Score=54.64 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=34.1
Q ss_pred CCCCCcccCCCCCccccccccccceEEEe----cC--CCCc-------eeEEEecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYEYV----PD--EKNQ-------LKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~~~----~~--~~~~-------~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+-+.|+.| |.|..+||+-...-. +. ..+. .......+.|+.||.|..+||.+.
T Consensus 5 ~~~~Ci~C------g~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 5 SFDSCIKC------TVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred chhhcCCC------CCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCCC
Confidence 35789999 899999998643210 00 0010 011223479999999999999754
No 376
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.96 E-value=0.9 Score=48.77 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=47.9
Q ss_pred ehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 11 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+-.++-++|.+++++.|++++.+++|.++..+++ .+.|.+.+ +.+++++.||+|+|++..
T Consensus 264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~--~~~V~~~~---------------g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELAN---------------GAVLKAKTVILATGARWR 323 (517)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC--eEEEEECC---------------CCEEEcCEEEECCCCCcC
Confidence 4457888999999999999999999999988652 34555542 357999999999999753
No 377
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=90.82 E-value=0.21 Score=53.20 Aligned_cols=63 Identities=22% Similarity=0.458 Sum_probs=49.4
Q ss_pred CEEEehHHHHHHHHHHHHH------CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEe
Q 013495 7 GNRKSLSQLVRWLGGKAEE------LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLL 80 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~------~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~ 80 (442)
+....|++-|++|.+++.+ .+.+|+.+ .|.+++.+++.+|+||.|.+ |..++|+.||+
T Consensus 89 AVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~---------------G~~~~a~aVVl 152 (621)
T COG0445 89 AVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD---------------GPEFHAKAVVL 152 (621)
T ss_pred hhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC---------------CCeeecCEEEE
Confidence 3456788999998887753 46888876 57788877634699999985 68999999999
Q ss_pred ccCCC
Q 013495 81 AEGCR 85 (442)
Q Consensus 81 AdG~~ 85 (442)
++|..
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99964
No 378
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=90.78 E-value=0.027 Score=52.02 Aligned_cols=51 Identities=20% Similarity=0.446 Sum_probs=33.3
Q ss_pred CCCcccCCCCCccccccccccceEE-EecCC------CCceeEEEe---cCCCccCCcccccCCCCC
Q 013495 369 KIPELVNLPEYAGPESRYCPARVYE-YVPDE------KNQLKLQIN---AQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~y~-~~~~~------~~~~~~~i~---~~~Ci~Cg~C~~~cp~~~ 425 (442)
+-|.+| |.|+.+||++=|+ +...+ .|.+...+. -=.|+.|.+|...||.++
T Consensus 39 ~~C~QC------G~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v 99 (195)
T COG1150 39 EGCYQC------GTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGV 99 (195)
T ss_pred hHhhcc------CcccCCCCCcccCCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCC
Confidence 459998 8999999999773 11100 011111122 236999999999999876
No 379
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=90.74 E-value=0.16 Score=46.30 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=22.1
Q ss_pred eEEEecCCCccCCcccccCCCCCee
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.+.++.++|+.||.|..+||.+++.
T Consensus 53 ~i~~~~~~Ci~Cg~C~~aCP~~~~~ 77 (167)
T CHL00014 53 RIHFEFDKCIACEVCVRVCPIDLPV 77 (167)
T ss_pred eEEeccccCCCcCcHHHhCCCCCcc
Confidence 5778899999999999999998753
No 380
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=90.65 E-value=0.62 Score=50.48 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEc-CC--CcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYD-AD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~-~~--g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-.=|.+.+++.||+|+++++|++|+.+ ++ ++|+||.+.. +|+.+ .-....+|.||+|.|.-..=
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~~~~----~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NGKEE----TIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CCcee----EEEecCCCEEEEeCCcCccc
Confidence 45566888999999999999999999986 33 6789998753 22110 01235689999999976543
No 381
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=90.60 E-value=0.047 Score=55.54 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCCcccCCCCCccccccccccc-eEEEecCCCCceeEEEecCCCccCCcccccCCCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPAR-VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~-~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
-++|.+| +.|..+||+- .+..... -.+..+.--...|-+||.|..+||..+
T Consensus 13 l~iC~~C------~~C~~~CpvfPa~~~~~~-~~~~d~~~la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 13 LNLCNSC------GYCTGLCAVFPAAQGRPD-LTRGDLRHLAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred hHhCcCc------CCccccCCCccccccccc-cCHHHHHHHHHHCcCcccccccCcCCC
Confidence 4799999 6899999975 1111000 000011112468999999999999754
No 382
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=90.59 E-value=0.063 Score=55.73 Aligned_cols=50 Identities=24% Similarity=0.443 Sum_probs=31.6
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCC----C-----------c---eeEEEecCCCccCCcccccCCCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEK----N-----------Q---LKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~----~-----------~---~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
-+.|+.| +.|..+||+- ....++. | . ....-.-..|+.||.|...||.+.
T Consensus 22 ~~~C~~C------g~C~~~CP~~--~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 22 LRKCVHC------GFCTATCPTY--QLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred HHhCccC------CCccccCCcc--cccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCCC
Confidence 3579999 7999999963 2221110 0 0 001112358999999999999753
No 383
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=90.57 E-value=0.097 Score=31.10 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=16.7
Q ss_pred ecCCCCCcccCCCCCcccccccccc
Q 013495 365 LRDPKIPELVNLPEYAGPESRYCPA 389 (442)
Q Consensus 365 v~d~~~c~~~~~~~~~~~c~~~CPa 389 (442)
+.|.+.|++| +.|+.+||+
T Consensus 4 ~iD~~rCiGC------~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGC------GACEVACPV 22 (22)
T ss_pred EEccccccCc------hhHHHhhCc
Confidence 4589999999 799999995
No 384
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=90.47 E-value=0.097 Score=39.74 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=33.4
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEe--------cC---CCccCCcccccCCCCCeeE
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQIN--------AQ---NCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~--------~~---~Ci~Cg~C~~~cp~~~I~w 428 (442)
.|.+.|++| +.|+..||. +|+++++ |..++..+ .+ .++. .=...||.++|+|
T Consensus 3 vD~~~C~gc------g~C~~~aP~-vF~~d~~--g~a~~~~~~~~~~~~v~~~~~~~~~--~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 3 VDRDRCIGC------GLCVELAPE-VFELDDD--GKAVVLVDGGEGEGEVPEEDEEDVR--EAAEACPVGAIHV 65 (65)
T ss_pred EecccCcCc------cHHHhhCCc-cEEECCC--CCEEEEecCcccccCCCchhHHHHH--HHHHhCCHhhEEC
Confidence 478999998 789999986 7888765 43233332 11 1111 1146789999886
No 385
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=90.06 E-value=0.17 Score=52.31 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=30.2
Q ss_pred cccccccccce---EEEecCCCCceeEEEecC--CCccCCcccccCCCCCeeEECcC
Q 013495 381 GPESRYCPARV---YEYVPDEKNQLKLQINAQ--NCLHCKACDIKDPKQNIKWTVPE 432 (442)
Q Consensus 381 ~~c~~~CPa~~---y~~~~~~~~~~~~~i~~~--~Ci~Cg~C~~~cp~~~I~w~~p~ 432 (442)
..|.+.||..- ..+... -.++.. .|+.|+.|+.+|+........|.
T Consensus 218 ~~c~k~cp~~~~~~v~v~p~------~~~~~~~~~CI~C~~CidaCd~~~~~~~~~~ 268 (386)
T COG0348 218 KRCKKVCPEPIPLWVQVCPA------GIDIRDGLECIGCGRCIDACDDDMLKFNLPF 268 (386)
T ss_pred ccccccCCccccceeEeccc------ccccccccccccHhhHhhhCCHHhheecccc
Confidence 46889998553 223332 112222 59999999999998777666554
No 386
>PRK06991 ferredoxin; Provisional
Probab=89.91 E-value=0.13 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.2
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
.+.||.+.|+.|+.|..+||+++|..
T Consensus 79 ~~~id~~~CigCg~Cv~aCP~~AI~~ 104 (270)
T PRK06991 79 VAVIDEQLCIGCTLCMQACPVDAIVG 104 (270)
T ss_pred eeEEccccCCCCcHHHHhCCHhheec
Confidence 46788999999999999999999864
No 387
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=89.89 E-value=0.051 Score=54.95 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCCCcccCCCCCccccccccccce--------------EEEecCC-C--CceeEE-Ee-----cCCCccCCcccccCCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARV--------------YEYVPDE-K--NQLKLQ-IN-----AQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~--------------y~~~~~~-~--~~~~~~-i~-----~~~Ci~Cg~C~~~cp~~ 424 (442)
...|+.| |.|..+||+.. |.+..+. + ...++. ++ --+|++|+.|..+||.+
T Consensus 151 ~~~Ci~C------G~C~s~CP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 151 TGNCILC------GACYSECNAREVNPEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPME 224 (329)
T ss_pred hhhCccc------CcccccCCCCCcCcCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCC
Confidence 4679998 79999999752 2221111 0 001111 11 24799999999999975
Q ss_pred C
Q 013495 425 N 425 (442)
Q Consensus 425 ~ 425 (442)
.
T Consensus 225 I 225 (329)
T PRK12577 225 V 225 (329)
T ss_pred C
Confidence 4
No 388
>PRK07208 hypothetical protein; Provisional
Probab=89.88 E-value=1.1 Score=47.17 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
..|-..|++.+++.|++|+.+++|++|..++++.++++...+ .+|+ ..++.|+.||.|--..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----~~g~-------~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVND----TDGT-------EETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----CCCC-------EEEEEcCEEEECCCHH
Confidence 357778889999999999999999999998766555554431 1221 1468999999876654
No 389
>PRK02651 photosystem I subunit VII; Provisional
Probab=89.87 E-value=0.14 Score=40.49 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEecCCCccCCcccccCCCCCeeEE
Q 013495 405 QINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 405 ~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
....++|++|+.|..+||.++|+..
T Consensus 5 ~~~~~~Ci~C~~C~~~CP~~~i~~~ 29 (81)
T PRK02651 5 VKIYDTCIGCTQCVRACPLDVLEMV 29 (81)
T ss_pred ccccccCCCcchHHHHCCccceecc
Confidence 3457899999999999999998754
No 390
>PRK06116 glutathione reductase; Validated
Probab=89.85 E-value=1.4 Score=46.19 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.+..++.|++++.+++|.++..++++. +.|.+.+ |.++.++.||.|.|.+...
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~-~~v~~~~---------------g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS-LTLTLED---------------GETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce-EEEEEcC---------------CcEEEeCEEEEeeCCCcCC
Confidence 345567777888999999999999998765453 3455543 3579999999999987543
No 391
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.78 E-value=1.3 Score=43.06 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 12 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
-.++-..|.+.+++.|++++. +.|.++..+++ .+.|.+.+ +.+++++.||.|+|....
T Consensus 56 ~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~~v~~~~---------------~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 56 GPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDR--PFKVKTGD---------------GKEYTAKAVIIATGASAR 113 (300)
T ss_pred hHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCC--eeEEEeCC---------------CCEEEeCEEEECCCCCcc
Confidence 356778889999999999998 78999877653 23455542 358999999999998754
No 392
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.74 E-value=1.5 Score=44.88 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+...|.+..++.|++++.++.+.++..++ + .+.|.+.+ +.++.++.||.|.|....
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~---------------g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-S-GIRATLDS---------------GRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccC-C-EEEEEEcC---------------CcEEECCEEEECcCCCcc
Confidence 345566777888999999999999997654 2 34566543 468999999999998764
No 393
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=89.49 E-value=0.093 Score=46.99 Aligned_cols=28 Identities=29% Similarity=0.616 Sum_probs=22.3
Q ss_pred ecCCCccCCcccccCCCCCee--EECcCCC
Q 013495 407 NAQNCLHCKACDIKDPKQNIK--WTVPEGG 434 (442)
Q Consensus 407 ~~~~Ci~Cg~C~~~cp~~~I~--w~~p~gg 434 (442)
-.++||-|+.|..+||-|+|+ |+...-|
T Consensus 109 geerCIACklCeavCPaqaitieae~r~dg 138 (212)
T KOG3256|consen 109 GEERCIACKLCEAVCPAQAITIEAEERTDG 138 (212)
T ss_pred cchhhhhHHHHHHhCCcccceeeceecCCc
Confidence 367999999999999999975 7644433
No 394
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=89.47 E-value=0.2 Score=45.53 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.2
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
...+|.++|++|+.|..+||+++|...
T Consensus 107 ~~~id~~~Ci~Cg~C~~aCp~~ai~~~ 133 (165)
T TIGR01944 107 VALIDEDNCIGCTKCIQACPVDAIVGA 133 (165)
T ss_pred eEEEECCcCCChhHHHHhCCccceEec
Confidence 578899999999999999999998754
No 395
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=89.30 E-value=1.7 Score=49.59 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=49.6
Q ss_pred HHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHHHHh
Q 013495 16 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKN 95 (442)
Q Consensus 16 d~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~~ 95 (442)
-+.|.++.++.|++|++++.+.++..++++.+..|.+.+ |.++.++.||.|.|.+.... |.+.
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d---------------G~~i~~D~Vv~A~G~rPn~~--L~~~ 252 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD---------------GSELEVDFIVFSTGIRPQDK--LATQ 252 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC---------------CCEEEcCEEEECCCcccCch--HHhh
Confidence 356677778899999999999999765434456676653 46899999999999987742 4444
Q ss_pred cCCc
Q 013495 96 FKLR 99 (442)
Q Consensus 96 ~gl~ 99 (442)
.|+.
T Consensus 253 ~Gl~ 256 (847)
T PRK14989 253 CGLA 256 (847)
T ss_pred cCcc
Confidence 5653
No 396
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=89.05 E-value=0.44 Score=48.44 Aligned_cols=69 Identities=28% Similarity=0.308 Sum_probs=48.6
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCC--cEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g--~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
+.+..+|.+|.++|.--|++..-.+..+.+|++|..++++ ....|.+.+ .+| .+.+++||-||+|.|
T Consensus 88 ~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g-------~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 88 GYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDG-------DGETYRARNVVLATG 156 (341)
T ss_dssp --SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS--------EEEEEESEEEE---
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCC-------CeeEEEeCeEEECcC
Confidence 3456899999999999999998779999999999887644 356677643 233 247899999999999
Q ss_pred CC
Q 013495 84 CR 85 (442)
Q Consensus 84 ~~ 85 (442)
..
T Consensus 157 ~~ 158 (341)
T PF13434_consen 157 GQ 158 (341)
T ss_dssp -E
T ss_pred CC
Confidence 44
No 397
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=88.89 E-value=0.94 Score=48.74 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHHHHHHHHH-HCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHHH
Q 013495 15 LVRWLGGKAE-ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLI 93 (442)
Q Consensus 15 fd~~L~~~Ae-~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~ 93 (442)
...|| ..|+ +.+++|++++.|.+|++++ ++++||++.+. |. ....+.||.||+|.|+-.+ .+|+
T Consensus 196 ~~~~l-~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~-----~~------~~~~~~ak~VIlaAGai~S--P~LL 260 (532)
T TIGR01810 196 ARAYL-HPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKG-----GR------KEHTEANKEVILSAGAINS--PQLL 260 (532)
T ss_pred HHHHh-hhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeC-----Cc------EEEEEEeeeEEEccCCCCC--HHHH
Confidence 44555 4455 5679999999999999985 78999987641 11 0134689999999998333 4455
Q ss_pred HhcCCc
Q 013495 94 KNFKLR 99 (442)
Q Consensus 94 ~~~gl~ 99 (442)
..-|+-
T Consensus 261 l~SGIG 266 (532)
T TIGR01810 261 QLSGIG 266 (532)
T ss_pred HhcCCC
Confidence 555664
No 398
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=88.83 E-value=0.19 Score=48.81 Aligned_cols=53 Identities=9% Similarity=-0.041 Sum_probs=32.5
Q ss_pred cCCCCCcccCCCCCccccccccccceEE-EecCC-CC-----------------cee--EEE---ecCCCccCCcccccC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYE-YVPDE-KN-----------------QLK--LQI---NAQNCLHCKACDIKD 421 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~-~~~~~-~~-----------------~~~--~~i---~~~~Ci~Cg~C~~~c 421 (442)
.+...|+.| +.|..+||+-... ....+ -| ..+ ... .-.+|.+|+.|..+|
T Consensus 139 ~~~~~CI~C------G~C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~~~rl~~~~~~~gl~~C~~C~~C~~vC 212 (251)
T PRK12386 139 QEFRKCIEC------FLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTADRRAEAQEEHGLGYCNITKCCTEVC 212 (251)
T ss_pred hchhhcccC------CcccCcCCcccccCCCcccccCHHHHHHHHHhhcCccchHHHHHHhhcccCcccCcCCCCcCCcC
Confidence 356889998 8999999964321 00000 00 001 111 235699999999999
Q ss_pred CCC
Q 013495 422 PKQ 424 (442)
Q Consensus 422 p~~ 424 (442)
|.+
T Consensus 213 Pkg 215 (251)
T PRK12386 213 PEH 215 (251)
T ss_pred CCC
Confidence 964
No 399
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=88.81 E-value=0.12 Score=49.61 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=14.5
Q ss_pred CCCccCCcccccCCCC
Q 013495 409 QNCLHCKACDIKDPKQ 424 (442)
Q Consensus 409 ~~Ci~Cg~C~~~cp~~ 424 (442)
.+|++||.|..+||.+
T Consensus 198 ~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 198 FRCHTIMNCVEVCPKG 213 (232)
T ss_pred ccCcCcCCcCccccCC
Confidence 5899999999999964
No 400
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=88.80 E-value=1.6 Score=45.56 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
..+.+.|.+..++.|++++++++|.++.. ++.+..|.+. +.++.++.||.|.|....
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~----------------~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD----------------KGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC----------------CCEEEcCEEEECcCCCcC
Confidence 35666777888899999999999999953 3456666554 247999999999998754
No 401
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.70 E-value=1.7 Score=46.68 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=46.7
Q ss_pred ehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 11 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
...++-+.|.+++++.|++++.+++|.++..+++. ..|.+.+ +.+++++.+|+|+|++.
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~---------------g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLES---------------GEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECC---------------CCEEEeCEEEECCCCCc
Confidence 45678888999999999999999999999776522 3455542 35799999999999874
No 402
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=88.58 E-value=42 Score=38.27 Aligned_cols=38 Identities=24% Similarity=0.075 Sum_probs=30.9
Q ss_pred CCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHHhhhcc
Q 013495 216 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 256 (442)
Q Consensus 216 ~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~~al~~ 256 (442)
+++.++|++.....| .-||-|+.||+.||+.|.+.++.
T Consensus 644 GRL~FAGEaTs~~~~---GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 644 GRVFFAGEATNKQYP---ATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred CCEEEEEhhHhCCCC---eEhHHHHHHHHHHHHHHHHHHhh
Confidence 489999999876544 45677999999999999887754
No 403
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=88.51 E-value=2.4 Score=43.69 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHHH
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLI 93 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~ 93 (442)
.+-++|.+..++.|++++++++|.++.. + + .+.|.+.+ |.++.++.||.|.|..... .+.
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~-~~~v~l~~---------------g~~i~aD~Vv~a~G~~pn~--~l~ 246 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G-E-KVELTLQS---------------GETLQADVVIYGIGISAND--QLA 246 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-C-EEEEEECC---------------CCEEECCEEEECCCCChhh--HHH
Confidence 3456778888899999999999999865 2 2 24466543 4579999999999987552 233
Q ss_pred HhcCCc
Q 013495 94 KNFKLR 99 (442)
Q Consensus 94 ~~~gl~ 99 (442)
+..|+.
T Consensus 247 ~~~gl~ 252 (396)
T PRK09754 247 REANLD 252 (396)
T ss_pred HhcCCC
Confidence 344553
No 404
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=88.20 E-value=0.24 Score=46.18 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.3
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
...+|.++|+.|+.|..+||+++|..
T Consensus 108 ~~~id~~~Ci~Cg~Cv~aCp~~ai~~ 133 (191)
T PRK05113 108 VAFIDEDNCIGCTKCIQACPVDAIVG 133 (191)
T ss_pred eeEEeCCcCCCCChhhhhCCHhhhec
Confidence 57789999999999999999999864
No 405
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.96 E-value=1.9 Score=45.35 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
..+.+.+.+..++.|++++.+++|.++..++ +.+ .|++.+ |+ ..++.++.||.|.|......
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~------g~-------~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKG------GE-------TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeC------Cc-------EEEEEeCEEEEecCCcccCC
Confidence 3456677788888999999999999997765 333 244432 21 14799999999999987754
No 406
>PRK06370 mercuric reductase; Validated
Probab=87.87 E-value=2.4 Score=44.70 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+..++.|++++++++|.++..++++..+.+...+ .+.++.++.||.|.|.....
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~--------------~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNG--------------GAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCC--------------CceEEEeCEEEECcCCCcCC
Confidence 35567777888899999999999999876533222222211 13579999999999988664
No 407
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=87.64 E-value=0.21 Score=47.88 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=24.5
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
...||.++|++|+.|..+||.++|++.
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~~ 194 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEME 194 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEEe
Confidence 467899999999999999999998875
No 408
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=87.52 E-value=0.24 Score=47.58 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=24.0
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.+.+|.+.|++|+.|..+||.++|...
T Consensus 142 p~~id~~~C~~C~~C~~~CP~~ai~~~ 168 (234)
T TIGR02700 142 PYMIDRKRCKGCGICVDACPRSAIDMV 168 (234)
T ss_pred ceEEChhHCcCcchHHHhCCcccEEec
Confidence 467899999999999999999998764
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.20 E-value=1.6 Score=50.12 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHHHHHHHH----CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEE----LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~----~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+-+.|.+.+++ .++.+++.+.+.+++.++ |+|+||...+. ++|+ -..|+||.||+|+|..+.+
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-GRAVGAAALNT---RTGE-------FVTVGAKAVILATGPCGRL 207 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-CEEEEEEEEec---CCCc-------EEEEECCEEEECCCccccC
Confidence 33455555544 378999998889998764 89999976431 2342 2579999999999998765
No 410
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.02 E-value=2.5 Score=44.43 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
++...|.+..++.|+++++++.|+++..++++ +.|.+.+ +.++.++.||.|.|.+...
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~---------------g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKS---------------GKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECC---------------CCEEEeCEEEEeecCCccc
Confidence 44567777888899999999999999765533 3344432 3579999999999998664
No 411
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=86.98 E-value=0.14 Score=49.83 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCCCCcccCCCCCccccccccccceE--------------EEecCC--C--CceeEE-E----ecCCCccCCcccccCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVY--------------EYVPDE--K--NQLKLQ-I----NAQNCLHCKACDIKDPK 423 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y--------------~~~~~~--~--~~~~~~-i----~~~~Ci~Cg~C~~~cp~ 423 (442)
+...|+.| +.|..+||+... .+..+. + ...++. + .--+|.+||.|..+||.
T Consensus 150 ~~~~CI~C------G~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPk 223 (249)
T PRK08640 150 ELSKCMTC------GCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPK 223 (249)
T ss_pred hhhhccCc------CcccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCC
Confidence 46789999 799999996532 111111 0 001111 1 12689999999999996
Q ss_pred C
Q 013495 424 Q 424 (442)
Q Consensus 424 ~ 424 (442)
+
T Consensus 224 g 224 (249)
T PRK08640 224 G 224 (249)
T ss_pred C
Confidence 4
No 412
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=86.92 E-value=0.21 Score=47.56 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=38.2
Q ss_pred cCCC-CCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCC
Q 013495 366 RDPK-IPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 366 ~d~~-~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
.++. .|.+| +.|...||+.++... + ...+...|+.||+|-+.||.+.
T Consensus 186 l~qg~~C~G~------~TC~A~CP~~ai~c~-G------c~g~~~~~~~~Ga~~v~~~rs~ 233 (247)
T COG1941 186 LEQGLPCMGC------GTCAASCPSRAIPCR-G------CRGNIPRCIKCGACFVSCPRSK 233 (247)
T ss_pred ecCCCcccCc------hhhhccCCccCCccc-C------CcCCcccchhhhHHHHHHhHHh
Confidence 3445 99998 679999999999886 2 3447789999999999999654
No 413
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=86.82 E-value=0.29 Score=37.72 Aligned_cols=21 Identities=24% Similarity=0.749 Sum_probs=19.3
Q ss_pred eEEEecCCCccCCcccccCCC
Q 013495 403 KLQINAQNCLHCKACDIKDPK 423 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~ 423 (442)
++.+|.+.|+.||.|...||.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPd 22 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPD 22 (68)
T ss_pred EEEechhhccccchhhhcCCc
Confidence 688999999999999999994
No 414
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.67 E-value=2.7 Score=44.26 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCc--c-ccCCCCC--ccCCCCceEEEEcEEEeccCCCC
Q 013495 17 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM--G-IAKDGSK--KENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 17 ~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~--g-~~~~G~~--~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
....+++++.||++++++.+.++..+++|+|.+|.+..+ + .+.+|+. +.......++.++.||.|.|...
T Consensus 313 ~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p 387 (449)
T TIGR01316 313 VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGS 387 (449)
T ss_pred HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCC
Confidence 344577889999999999999998766678888876421 1 0123321 11111234799999999999753
No 415
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=2.6 Score=42.22 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=45.8
Q ss_pred EehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 10 KSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 10 v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
++=.+|-+-+.++|+..|+++.. ..|.++...++ ...|.|.+ + +++||.||+|+|+...
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~---------------~-~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK---------------G-TYEAKAVIIATGAGAR 116 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC---------------C-eEEEeEEEECcCCccc
Confidence 34457778889999999999998 67777766542 56787774 3 4999999999999844
No 416
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.11 E-value=2 Score=33.47 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCC
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 54 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~ 54 (442)
.+-+++.+..++.|+++++++.+.++..++++ +. |+++|
T Consensus 41 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 41 DAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 34556677778899999999999999998877 66 87764
No 417
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=86.10 E-value=1.9 Score=45.28 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=48.5
Q ss_pred HHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 16 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 16 d~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
-+.+.+.-++.||+++.++.++++..+.+|+|+-|.+.+ +.++.|+.||...|+...
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d---------------g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD---------------GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc---------------CCEeccCeEEEeeccccc
Confidence 344455567899999999999999998889999999886 579999999999998754
No 418
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=85.94 E-value=0.2 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=22.8
Q ss_pred eEEEecCCCccCCcccccCCC---CCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPK---QNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~---~~I~w~ 429 (442)
+..+|.++|++||.|..+||. ++|.|.
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~ 192 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKKAVGALSFE 192 (314)
T ss_pred CCceeCccCCcchHHHHhcChhhcCceecc
Confidence 567899999999999999996 566663
No 419
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=85.93 E-value=0.15 Score=54.14 Aligned_cols=48 Identities=29% Similarity=0.541 Sum_probs=33.1
Q ss_pred CCCcccCCCCCccccccccccce-----EEEecCCCCc-eeEEEecCCCccCCcccccCCCC
Q 013495 369 KIPELVNLPEYAGPESRYCPARV-----YEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 369 ~~c~~~~~~~~~~~c~~~CPa~~-----y~~~~~~~~~-~~~~i~~~~Ci~Cg~C~~~cp~~ 424 (442)
..|..| |-|.++||... ++... +|. .++.--++.|+.|+.|...||.+
T Consensus 400 ~kc~~c------G~C~~~CP~~l~i~eam~~A~--~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 400 RKCTYC------GNCMRACPNELDIPEAMEYAA--KGDFSKLEDLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred Hhcccc------cchhccCCcccchHHHHHHhh--cCChHHHHHHHHHhhhhhhhhhhCccc
Confidence 678887 89999999642 12111 122 23444478999999999999953
No 420
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=85.80 E-value=0.29 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.9
Q ss_pred eEEEecCCCccCCcccccCCCCCeeE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
.+.++.++|++||.|..+||+++|+-
T Consensus 677 ~p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 677 VPVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred cceeccccCCCccchHHhcChhhccc
Confidence 57789999999999999999999975
No 421
>PRK02106 choline dehydrogenase; Validated
Probab=85.77 E-value=1.6 Score=47.37 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=55.5
Q ss_pred HHHHHHHHH-HCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHHHH
Q 013495 16 VRWLGGKAE-ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 94 (442)
Q Consensus 16 d~~L~~~Ae-~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~ 94 (442)
..+| ..|+ ..+++|++++.|+.|++++ ++++||++.+ .++. ...+.||.||+|.|+-.+ -+|+.
T Consensus 204 ~~~l-~~a~~~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~----~~~~-------~~~~~ak~VILaaGai~T--P~LLl 268 (560)
T PRK02106 204 RAYL-DPALKRPNLTIVTHALTDRILFEG-KRAVGVEYER----GGGR-------ETARARREVILSAGAINS--PQLLQ 268 (560)
T ss_pred HHhh-ccccCCCCcEEEcCCEEEEEEEeC-CeEEEEEEEe----CCcE-------EEEEeeeeEEEccCCCCC--HHHHh
Confidence 3444 4444 4569999999999999985 7899999864 1221 245789999999997654 34444
Q ss_pred hcCCcccccCCCceEEEEEEEEEeeC
Q 013495 95 NFKLREKSHAQHQTYALGIKEVWEID 120 (442)
Q Consensus 95 ~~gl~~~~~~~~~~~~~g~ke~~~~~ 120 (442)
.-|+-. . .+.-.+|+.-+.++|
T Consensus 269 ~SGIG~---~-~~L~~~gI~~~~dlP 290 (560)
T PRK02106 269 LSGIGP---A-EHLKELGIPVVHDLP 290 (560)
T ss_pred hcCCCC---h-HHHHhcCCceEeeCC
Confidence 557752 1 112234555555554
No 422
>PRK12831 putative oxidoreductase; Provisional
Probab=85.74 E-value=2.2 Score=45.20 Aligned_cols=67 Identities=21% Similarity=0.123 Sum_probs=45.5
Q ss_pred HHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCcc---ccCCCCCccCC--CCceEEEEcEEEeccCCCC
Q 013495 20 GGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKKENF--QRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 20 ~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g---~~~~G~~~~~~--~~g~~i~Ak~vI~AdG~~s 86 (442)
.++|++.|++|++++.+.++..+++|+|.+|++..+- .+.+|...+-. ....++.++.||.|.|...
T Consensus 325 ~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 325 VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCC
Confidence 3567889999999999999987666888888764321 12334321111 1124699999999999763
No 423
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=85.63 E-value=2.6 Score=44.68 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=46.4
Q ss_pred HHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCc--c-ccCCCCCccCC--CCceEEEEcEEEeccCCCC
Q 013495 18 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM--G-IAKDGSKKENF--QRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 18 ~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~--g-~~~~G~~~~~~--~~g~~i~Ak~vI~AdG~~s 86 (442)
...++|++.|+++++++.+.++..+++|.|.+|++..+ | .+.+|...+.. ....++.++.||.|.|...
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 45677889999999999999998765677877765321 1 12334321111 1235799999999999753
No 424
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=1.6 Score=41.71 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=46.3
Q ss_pred ehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccH
Q 013495 11 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 90 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar 90 (442)
.=.+|-.-+.+|+++.|.+|++. .|.++.... ....|.|. ..+++|+.||.|+|+. ||
T Consensus 68 ~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~l~td----------------~~~v~~~avI~atGAs---Ak 125 (322)
T KOG0404|consen 68 TGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFKLWTD----------------ARPVTADAVILATGAS---AK 125 (322)
T ss_pred ccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeEEEec----------------CCceeeeeEEEecccc---ee
Confidence 34567788899999999999987 588887664 34556664 2579999999999997 56
Q ss_pred HH
Q 013495 91 KL 92 (442)
Q Consensus 91 ~l 92 (442)
+|
T Consensus 126 Rl 127 (322)
T KOG0404|consen 126 RL 127 (322)
T ss_pred ee
Confidence 43
No 425
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=85.39 E-value=0.34 Score=48.81 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=36.1
Q ss_pred cCCCCCcccCCCCCccccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCC
Q 013495 366 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 423 (442)
Q Consensus 366 ~d~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~ 423 (442)
.|...|..| +.|...||. .|.+.+. . -..+...-|..|++|..+||.
T Consensus 2 ~~~~~c~~C------g~C~a~cp~-~i~~~~~--~--~~~~~~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGC------GTCAAVCPY-AITERDE--A--PLLIEECMDNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccc------hhhHhhCCc-eEEEecc--c--chhhhhhhcccchHHhhhCcc
Confidence 478899999 899999999 6666543 1 235666677778899999994
No 426
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.37 E-value=2.9 Score=44.27 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=47.5
Q ss_pred EehHHHHHHHHHHHHHCCcE--EecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCC
Q 013495 10 KSLSQLVRWLGGKAEELGVE--IYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 10 v~R~~fd~~L~~~Ae~~Gve--i~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
..+.++-++|.+.|+..|++ |+.+++|+++..+++. +.|++.+ .++. ..+..++.||+|+|..+
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~--w~V~~~~----~~~~-------~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK--WRVQSKN----SGGF-------SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe--EEEEEEc----CCCc-------eEEEEcCEEEEeccCCC
Confidence 35678999999999999998 9999999999876533 4555542 0110 13567899999999753
No 427
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=85.20 E-value=3.5 Score=46.68 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+-++|.+..++.|+++++++.++++..+ +.+.+|.+.+ |.++.++.||.|.|.+...
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d---------------G~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKD---------------GSSLEADLIVMAAGIRPND 240 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECC---------------CCEEEcCEEEECCCCCcCc
Confidence 3456667778899999999999988643 4567787764 4689999999999988653
No 428
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=84.59 E-value=4.5 Score=42.75 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+..++.|++++++++|.++..+.++.+..+.+.+ |+ ..++.++.||.|.|.....
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~-------~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE-------EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc-------eEEEEeCEEEEeeCCccCC
Confidence 34566667778899999999999999752123444444332 21 2579999999999998664
No 429
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=84.51 E-value=5.3 Score=35.51 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=43.3
Q ss_pred cCCEEEehHHHHHHHHHHHHH------CCcEEe-cCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcE
Q 013495 5 HNGNRKSLSQLVRWLGGKAEE------LGVEIY-PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRI 77 (442)
Q Consensus 5 ~~~y~v~R~~fd~~L~~~Ae~------~Gvei~-~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~ 77 (442)
+..-.++|..|-++|.+..++ .|++|. ...+|+++...+++. .|.+.+ |..++++.
T Consensus 86 ~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~---------------g~~~~~d~ 148 (156)
T PF13454_consen 86 DPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY--RVVTAD---------------GQSIRADA 148 (156)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE--EEEECC---------------CCEEEeCE
Confidence 344567888888888776554 243332 245888888887663 455553 46889999
Q ss_pred EEeccCC
Q 013495 78 TLLAEGC 84 (442)
Q Consensus 78 vI~AdG~ 84 (442)
||+|+|-
T Consensus 149 VvLa~Gh 155 (156)
T PF13454_consen 149 VVLATGH 155 (156)
T ss_pred EEECCCC
Confidence 9999995
No 430
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=84.51 E-value=0.27 Score=52.39 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCCCCcccCCCCCccccccccccceEE-------------EecC--CCCc---eeEEEecCCCccCCcccccCCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYE-------------YVPD--EKNQ---LKLQINAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~-------------~~~~--~~~~---~~~~i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
+-+.|+.| |.|..+||+-... ...+ ++.. ..+.-....|+.||.|..+||.+.
T Consensus 131 ~~~~Ci~C------G~C~~~CP~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 131 KLRGCIEC------LSCVSTCPARKVSDYPGPTFMRQLARFAFDPRDEGDREKEAFDEGLYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred CchhcccC------ccccccCCCCccccCcCHHHHHHHHHHhhCCcchhhHHHHHhcCCCcCCCCcCcccCcCCCCC
Confidence 35789998 8999999975321 0000 0000 001123468999999999999653
No 431
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=84.42 E-value=4.4 Score=42.63 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+-..|.+..++.|++++++++|.++..++++ +.|.+.. +| .+.++.++.||.|.|.....
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~-----~~-------~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEK-----PG-------GQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEe-----CC-------CceEEEeCEEEEeECCCcCC
Confidence 4456666777899999999999999775422 3344321 11 13579999999999987664
No 432
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=84.11 E-value=0.45 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.5
Q ss_pred EecCCCccCCcccccCCCCC
Q 013495 406 INAQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 406 i~~~~Ci~Cg~C~~~cp~~~ 425 (442)
.....|+.||.|+.+||.+-
T Consensus 47 ~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred cCCccCCCcChHhhhcCCCC
Confidence 35678999999999999753
No 433
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.03 E-value=0.28 Score=47.18 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCCCcccCCCCCccccccccccceEE---Ee-------------cCCC--CceeEE-Ee----cCCCccCCcccccCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPARVYE---YV-------------PDEK--NQLKLQ-IN----AQNCLHCKACDIKDPK 423 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~~y~---~~-------------~~~~--~~~~~~-i~----~~~Ci~Cg~C~~~cp~ 423 (442)
+...|+.| |.|..+||+-... +. +..+ ...++. ++ -..|..||.|..+||.
T Consensus 142 ~~~~CI~C------G~C~s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPk 215 (235)
T PRK12575 142 GLYECILC------ACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPK 215 (235)
T ss_pred hhhhCccc------ccccccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCC
Confidence 45789998 8999999974321 10 0000 000111 11 3489999999999996
Q ss_pred C
Q 013495 424 Q 424 (442)
Q Consensus 424 ~ 424 (442)
+
T Consensus 216 g 216 (235)
T PRK12575 216 G 216 (235)
T ss_pred C
Confidence 4
No 434
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=84.01 E-value=0.38 Score=39.94 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=21.7
Q ss_pred EEEecCCCccCCcccccCCCCCeeEE
Q 013495 404 LQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 404 ~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
..+..+.|++|+.|..+||.++|...
T Consensus 29 ~~~~~~~C~~C~~C~~~CP~~~i~~~ 54 (101)
T TIGR00402 29 ESLFSAVCTRCGECASACENNILQLG 54 (101)
T ss_pred cccCcCcCcChhHHHHHcCcccceec
Confidence 34566799999999999999998764
No 435
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=83.72 E-value=0.52 Score=46.10 Aligned_cols=44 Identities=14% Similarity=0.434 Sum_probs=32.4
Q ss_pred cccccccccceEEEecCCCCceeEEEecCCCccCCcccccCCCCCeeEE
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
.--...+|+.+-.+... +++.+ .+.|.+|+.|..+||.++|.+.
T Consensus 146 ~~HAKw~p~~~~~yr~~----p~I~i-~~~C~~C~~C~~~CP~~vi~~~ 189 (263)
T PRK00783 146 KEHAKWQPGSACGYKYY----PRIEV-SEDCDECEKCVEACPRGVLELK 189 (263)
T ss_pred cccCccCcceEeeeccc----ccccc-cccCCchHHHHHhCCccccEec
Confidence 34556778765443322 25677 7899999999999999999885
No 436
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=83.51 E-value=4.4 Score=42.63 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.+.+..++.|++++++++|.++..++ +. +.|.+.+ +|+ ..++.++.||.|.|.....
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~-v~v~~~~-----gg~-------~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTD-DG-VTVTLED-----GGK-------EETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CE-EEEEEEe-----CCe-------eEEEEeCEEEEeeCCccCC
Confidence 556677778889999999999999998665 32 3454432 111 1579999999999998654
No 437
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=83.24 E-value=0.47 Score=35.95 Aligned_cols=19 Identities=21% Similarity=0.670 Sum_probs=17.6
Q ss_pred EEEecCCCccCCcccccCC
Q 013495 404 LQINAQNCLHCKACDIKDP 422 (442)
Q Consensus 404 ~~i~~~~Ci~Cg~C~~~cp 422 (442)
+.||.++|+.||.|...||
T Consensus 1 V~vD~~~C~gcg~C~~~aP 19 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAP 19 (65)
T ss_pred CEEecccCcCccHHHhhCC
Confidence 4689999999999999999
No 438
>PRK09897 hypothetical protein; Provisional
Probab=83.09 E-value=4.3 Score=43.91 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHHHHHCC--cEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 19 LGGKAEELG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 19 L~~~Ae~~G--vei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
|.+++++.| ++++.+++|+++..++++ +.|.+.+ .+..+.|+.||+|+|-.
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~--------------gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQ--------------DLPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECC--------------CCeEEEcCEEEECCCCC
Confidence 345566777 788889999999887644 3465543 13578999999999963
No 439
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=83.06 E-value=2.5 Score=45.81 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCC-cEEecCCeEeEEEEcCC--CcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 15 LVRWLGGKAEELG-VEIYPGFAASEILYDAD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 15 fd~~L~~~Ae~~G-vei~~g~~v~~i~~~~~--g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
|...+.+.+ +.| ++|++++.|.+|+.+++ ++|.+|...+. .+|+ ..+++||.||+|.|+--+
T Consensus 216 ~~~~~~~~~-~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~---~~g~-------~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 216 FDLQPNDDA-PSERFTLLTNHRCTRLVRNETNESEIEAALVRDL---LSGD-------RFEIKADVYVLACGAVHN 280 (544)
T ss_pred hhhhhhhhc-cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC---CCCc-------EEEEECCEEEEccCchhh
Confidence 444333333 355 99999999999999865 46888877651 1232 367999999999997544
No 440
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.90 E-value=3.7 Score=41.29 Aligned_cols=70 Identities=30% Similarity=0.353 Sum_probs=51.1
Q ss_pred HHHHHHHHHC--CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHHHH
Q 013495 17 RWLGGKAEEL--GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 94 (442)
Q Consensus 17 ~~L~~~Ae~~--Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~ 94 (442)
.-|-+.|.+. =+.|..+++|.+|+.++ |.|.||+.-| ..|+. ..+.++-||+|+|-.+---+.|++
T Consensus 147 ~~l~k~as~~pe~~ki~~nskvv~il~n~-gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 147 TRLKKKASENPELVKILLNSKVVDILRNN-GKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLK 214 (477)
T ss_pred HHHHHhhhcChHHHhhhhcceeeeeecCC-CeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHH
Confidence 3344444442 38899999999999654 9999999875 55653 457789999999999854477776
Q ss_pred hcCC
Q 013495 95 NFKL 98 (442)
Q Consensus 95 ~~gl 98 (442)
.|+-
T Consensus 215 ey~p 218 (477)
T KOG2404|consen 215 EYGP 218 (477)
T ss_pred HhCh
Confidence 5543
No 441
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=82.51 E-value=5.1 Score=42.07 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
++-..|.+..++.|++++++++|+++..++++ +.|.+.+ +.++.++.||.|.|....
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~---------------g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSH---------------GEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcC---------------CcEeecCEEEEeeCCCcC
Confidence 34445666777899999999999999765534 3354432 357999999999998654
No 442
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=82.30 E-value=6.3 Score=41.66 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+..++.|++|+++++|.++..++++..+.+...+ +| .+.++.++.||.|.|.....
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~-----~g-------~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAA-----GG-------AAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcC-----CC-------ceeEEEeCEEEEccCCcccc
Confidence 35566777778899999999999999765433222222211 12 13579999999999998654
No 443
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=82.19 E-value=5.9 Score=42.30 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+.+.+.++.++.|+++++++.+.++..++++ ...|.+.+ +.++.++.||.|.|.....
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~---------------g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFES---------------GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcC---------------CCEEEcCEEEEeeCCCcCc
Confidence 3445556677899999999999999866544 34555542 3579999999999988765
No 444
>PRK13795 hypothetical protein; Provisional
Probab=82.17 E-value=0.65 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.7
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++.++.+.|++|+.|...||+++|...
T Consensus 575 ~~v~~~~~C~~Cg~C~~~CP~~ai~~~ 601 (636)
T PRK13795 575 RLLRRAAECVGCGVCVGACPTGAIRIE 601 (636)
T ss_pred eEEEccccCCCHhHHHHhCCcccEEee
Confidence 678899999999999999999998775
No 445
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=81.98 E-value=0.72 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.7
Q ss_pred eEEEecCCCccCCccc--ccCCCCCee
Q 013495 403 KLQINAQNCLHCKACD--IKDPKQNIK 427 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~--~~cp~~~I~ 427 (442)
++.++.++|++|+.|. .+||+++|.
T Consensus 296 ~p~id~dkCi~Cg~C~~~~aCPt~AI~ 322 (391)
T TIGR03287 296 RPKYNPERCENCDPCLVEEACPVPAIK 322 (391)
T ss_pred eEEEchhhCcCCCCCcCCcCCCHhhEe
Confidence 6888999999999995 899999986
No 446
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=81.88 E-value=2.5 Score=44.76 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccH
Q 013495 14 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 90 (442)
Q Consensus 14 ~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar 90 (442)
.+-+.|.+++++ .+++|+.+..+.+++.+++..+.||.+.+. +++ -.+++|+.||+|+|--+.|-+
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~----~~~-------~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNR----NGE-------LGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecC----CCe-------EEEEecCeEEEecCCCccccc
Confidence 456788888887 799999999999999987435569988641 111 268999999999999877644
No 447
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.69 E-value=5.7 Score=43.10 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=43.9
Q ss_pred ehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 11 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 11 ~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+...+.++|.+++++.|++++ .+.|+++..++ .+..|.+.+ .++.++.||+|+|++..
T Consensus 58 ~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~----------------g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 58 TGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR----------------GDYKTLAVLIATGASPR 115 (555)
T ss_pred CHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC----------------CEEEEeEEEECCCCccC
Confidence 445788899999999999987 56788887653 344566542 36899999999999754
No 448
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=81.52 E-value=0.33 Score=47.81 Aligned_cols=17 Identities=24% Similarity=0.424 Sum_probs=15.1
Q ss_pred CCCccCCcccccCCCCC
Q 013495 409 QNCLHCKACDIKDPKQN 425 (442)
Q Consensus 409 ~~Ci~Cg~C~~~cp~~~ 425 (442)
.+|..|+.|..+||.+-
T Consensus 244 ~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 244 YRCHTIRNCSNACPKGL 260 (276)
T ss_pred CcCcChhhccccCCCCC
Confidence 78999999999999643
No 449
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=81.20 E-value=0.48 Score=43.39 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.9
Q ss_pred eEEEecCCCccCCcccccCCCCCee
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
-..|+..+|+.|..|+.+||.+||.
T Consensus 109 va~i~e~~ciGCtkCiqaCpvdAiv 133 (198)
T COG2878 109 VALIDEANCIGCTKCIQACPVDAIV 133 (198)
T ss_pred eeEecchhccccHHHHHhCChhhhh
Confidence 5679999999999999999999984
No 450
>cd07032 RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subun
Probab=81.16 E-value=0.94 Score=44.96 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=30.9
Q ss_pred cccccccccceEEEecCCCCceeEEEecCCCccCCcccccC
Q 013495 381 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKD 421 (442)
Q Consensus 381 ~~c~~~CPa~~y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~c 421 (442)
..|+..||.+|+++++..++..-...|..+|.-|..|...|
T Consensus 203 ~~~~~~cP~~Vf~i~~~~~~~~~~V~~~~~ct~crec~~~~ 243 (291)
T cd07032 203 EKLQKCFPPGVIDIEEVKGKKKAVVANPRKDTLSREVLRHE 243 (291)
T ss_pred HHHHhhCCCccEEecccCCCceEEEcccccCcccHhHhhhh
Confidence 46899999999999653212234566889999999997655
No 451
>PLN02507 glutathione reductase
Probab=81.02 E-value=6.4 Score=42.10 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+-+++.+..++.|++++++++|.++..++++ +.|.+.+ +.++.++.||.|.|.....
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDH---------------GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECC---------------CcEEEcCEEEEeecCCCCC
Confidence 3344555667789999999999999865433 3354432 3579999999999998765
No 452
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=80.78 E-value=0.87 Score=47.58 Aligned_cols=27 Identities=30% Similarity=0.735 Sum_probs=23.1
Q ss_pred eEEEecCCCccCCcccccCCC---CCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPK---QNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~---~~I~w~ 429 (442)
++.+|.++|++|+.|...||. ++|.+.
T Consensus 336 ~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~ 365 (420)
T PRK08318 336 YARIDQDKCIGCGRCYIACEDTSHQAIEWD 365 (420)
T ss_pred EEEECHHHCCCCCcccccCCCcchhheeec
Confidence 678899999999999999996 477664
No 453
>PRK08764 ferredoxin; Provisional
Probab=80.66 E-value=0.66 Score=40.67 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.1
Q ss_pred EecCCCccCCcccccCCCCCeeE
Q 013495 406 INAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 406 i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
++.++|++|+.|..+||.++|..
T Consensus 82 ~~~~~Ci~C~~Cv~aCp~~ai~~ 104 (135)
T PRK08764 82 IVEADCIGCTKCIQACPVDAIVG 104 (135)
T ss_pred ECcccCcCcchHHHhCChhhcCc
Confidence 45679999999999999999865
No 454
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=80.60 E-value=0.26 Score=35.93 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=11.4
Q ss_pred cCCCccCCcccccCCC
Q 013495 408 AQNCLHCKACDIKDPK 423 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~ 423 (442)
.+.|+.||.|..+||.
T Consensus 2 ~~~Ci~Cg~C~~~CP~ 17 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPV 17 (57)
T ss_dssp HHC--S-SHHHHCSHH
T ss_pred HHHccCccChHHHChh
Confidence 5689999999999993
No 455
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=80.38 E-value=0.57 Score=34.76 Aligned_cols=18 Identities=22% Similarity=0.743 Sum_probs=11.5
Q ss_pred EecCCCccCCcccccCCC
Q 013495 406 INAQNCLHCKACDIKDPK 423 (442)
Q Consensus 406 i~~~~Ci~Cg~C~~~cp~ 423 (442)
||.+.|+.||.|...+|.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~ 18 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPD 18 (58)
T ss_dssp E-TTT--S-SHHHHH-TT
T ss_pred CChhhCcCCChHHHhCcH
Confidence 578899999999999994
No 456
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=80.00 E-value=0.98 Score=51.13 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCC--CCceeEEEecCCCccCCcc
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQLKLQINAQNCLHCKAC 417 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~--~~~~~~~i~~~~Ci~Cg~C 417 (442)
...|..| |.|+.+||+||+...+-. ...|.+..-..-|.+|+++
T Consensus 203 ~~~C~~C------G~Cv~VCPvGAL~~k~~~~~~~~wel~~v~TvCp~CsvG 248 (819)
T PRK08493 203 TLDCSFC------GECIAVCPVGALSSSDFQYTSNAWELKKIPATCPHCSDC 248 (819)
T ss_pred ccccccc------CcHHHhCCCCccccCccccccCccccccccCcCCCCccC
Confidence 3577777 899999999998764321 1224444456779988875
No 457
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=79.99 E-value=6.8 Score=41.49 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccHHHHH
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 94 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar~l~~ 94 (442)
+-+.|.+.-++.|+++++++.|+.+..++++ +.|.+.+ |+ +.+++|+.|+.|.|+...+-..-++
T Consensus 216 i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~------g~-------~~~~~ad~vLvAiGR~Pn~~~LgLe 280 (454)
T COG1249 216 ISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLED------GE-------GGTIEADAVLVAIGRKPNTDGLGLE 280 (454)
T ss_pred HHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEec------CC-------CCEEEeeEEEEccCCccCCCCCChh
Confidence 3444555555668999999999999877644 4566553 21 1279999999999998776432234
Q ss_pred hcCCc
Q 013495 95 NFKLR 99 (442)
Q Consensus 95 ~~gl~ 99 (442)
+.|+.
T Consensus 281 ~~Gv~ 285 (454)
T COG1249 281 NAGVE 285 (454)
T ss_pred hcCce
Confidence 44444
No 458
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=79.92 E-value=7.1 Score=41.11 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=47.7
Q ss_pred cCCEEEeh---HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEec
Q 013495 5 HNGNRKSL---SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLA 81 (442)
Q Consensus 5 ~~~y~v~R---~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~A 81 (442)
++.|+..+ +++-|-+.+.+.-.|.....+..|.++..+++|+++||..+ |.+++|+.||..
T Consensus 221 ~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~d 284 (438)
T PF00996_consen 221 KSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGD 284 (438)
T ss_dssp SSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEE
T ss_pred CCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEEC
Confidence 34555554 58889999998889999999999999999877999999764 589999999953
No 459
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.88 E-value=6 Score=38.29 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=43.6
Q ss_pred HHHHHHHHHHC-CcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 16 VRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 16 d~~L~~~Ae~~-Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+..+.+.+++. |++++++++++++..+ +.+.+|.+.+. .+| .+.++.++.||.|.|.+..
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g-------~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTG-------EEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCC-------ceEEEEccEEEEeeCCCCC
Confidence 55667777887 9999999999999754 35666665421 122 2468999999999997644
No 460
>PRK14694 putative mercuric reductase; Provisional
Probab=79.81 E-value=8.4 Score=40.69 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 13 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 13 ~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
..+...+.+..++.|+++++++.|.++..++ + .+.|.+.+ .++.++.||.|.|.....
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~-~~~v~~~~----------------~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG-R-EFILETNA----------------GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C-EEEEEECC----------------CEEEeCEEEEccCCCCCc
Confidence 3566778888888999999999999987654 3 23354432 369999999999998765
No 461
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=79.80 E-value=7.7 Score=40.99 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
.+...|.+.-++.|+++++++++.++..++ +. +.|.+.+ |.++.++.||.|.|......
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~---------------g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTG-DG-VVVTLTD---------------GRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-CE-EEEEECC---------------CcEEEecEEEEeecCCcCCC
Confidence 344566666778999999999999997654 33 2354432 35799999999999987753
No 462
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=79.76 E-value=0.73 Score=44.47 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=14.8
Q ss_pred cCCCccCCcccccCCCC
Q 013495 408 AQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~~ 424 (442)
--+|..|+.|..+||.+
T Consensus 205 i~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKD 221 (239)
T ss_pred cCCCcCcCccchhCCCC
Confidence 35899999999999964
No 463
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=79.54 E-value=5 Score=43.57 Aligned_cols=67 Identities=22% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCc--c-ccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 18 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM--G-IAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 18 ~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~--g-~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
...+++++.|+++++++.+.++..++++.+ +|+...+ + .+.+|.+.+.-....++.++.||.|.|..
T Consensus 310 ~~~~~a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 310 EEIEEALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHHHHHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 355677889999999999999986654543 6654221 1 12344322211123579999999999965
No 464
>PRK14727 putative mercuric reductase; Provisional
Probab=79.45 E-value=7.8 Score=41.13 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCccc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 89 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~la 89 (442)
+-+.|.+..++.|++++++++|.++..++++ +.|.+.+ .++.++.||.|.|......
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~----------------g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGH----------------GELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcC----------------CeEEeCEEEEccCCCCCcc
Confidence 4456666777899999999999999765532 3344332 3689999999999987653
No 465
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=79.34 E-value=1.1 Score=43.09 Aligned_cols=28 Identities=21% Similarity=0.578 Sum_probs=23.2
Q ss_pred eEEEecCCCccCCcccccCCC--CCeeEEC
Q 013495 403 KLQINAQNCLHCKACDIKDPK--QNIKWTV 430 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~--~~I~w~~ 430 (442)
.+.+|.++|+.|+.|..+||. +++.+..
T Consensus 140 ~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~ 169 (234)
T PRK07569 140 RFGIDHNRCVLCTRCVRVCDEIEGAHTWDV 169 (234)
T ss_pred cEEeehhhCcCccHHHHHHHHhcCCceeee
Confidence 688999999999999999993 5555653
No 466
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=79.20 E-value=2.3 Score=44.10 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCC
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 85 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~ 85 (442)
-+-+|-.++.++.||+++++..|.++.... +.+ -+.+.| |++++.++||.|.|..
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lkL~d---------------G~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLKLSD---------------GSELRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEEecC---------------CCeeeeeeEEEEecCC
Confidence 467888889999999999999999887765 433 355554 6899999999999964
No 467
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=79.12 E-value=2.5 Score=45.95 Aligned_cols=65 Identities=26% Similarity=0.444 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHH-CCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~-~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-..|.+++.+ .+.+|+.+..+.+++.++++.|.||...++ .+|+ -..++||.||.|+|..+.+
T Consensus 139 ~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~-------~~~~~akavilaTGG~g~~ 204 (562)
T COG1053 139 ELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDL---RTGE-------LYVFRAKAVILATGGAGRL 204 (562)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEe---cCCc-------EEEEecCcEEEccCCceEE
Confidence 467899999998 778999999999999887666888876542 3343 2578899999999998843
No 468
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=79.00 E-value=9.3 Score=40.29 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+-+.|.++.++.|++|+++++|.++..++ + .+.|.+.. .+|+ ..++.++.||.|.|.+...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~----~~g~-------~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNG-S-KVTVTVSK----KDGK-------AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeC-C-eEEEEEEe----cCCC-------eEEEEeCEEEECcCcccCC
Confidence 355667777788999999999999997543 3 23344321 1231 2579999999999988665
No 469
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=78.88 E-value=7.6 Score=40.33 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+.+.+.++.++.|++++.+++|.++..+ +.+ +.+.+ +.++.++.||.|.|.+..
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~---------------g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS---------------GGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC---------------CCEEEeCEEEECCCccCC
Confidence 45666777888899999999999998643 333 33332 357999999999998755
No 470
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=78.85 E-value=0.43 Score=48.83 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCCCcccCCCCCccccccccccceEEEecCCCCc---e-------e--EEEe---cCCCccCCcccccCCCCC
Q 013495 368 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ---L-------K--LQIN---AQNCLHCKACDIKDPKQN 425 (442)
Q Consensus 368 ~~~c~~~~~~~~~~~c~~~CPa~~y~~~~~~~~~---~-------~--~~i~---~~~Ci~Cg~C~~~cp~~~ 425 (442)
-+.|++| +.|..+||+-...-.....+. . . ..+. ...|+.|+.|...||.+.
T Consensus 8 ~~~Cv~C------g~C~~~CP~~~~~~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 8 LDKCVHC------GFCTNVCPSYRATEALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHhcCCC------CcccCcCCCccccCCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCC
Confidence 4689998 799999999765400111110 0 0 1111 268999999999999754
No 471
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=78.83 E-value=8 Score=40.39 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.|.+..++.|++++.+++|.++..++ +. +.|.+.+ .++.++.||.|.|.....
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~v~~~~----------------g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHHE-NQ-VQVHSEH----------------AQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CE-EEEEEcC----------------CeEEeCEEEEeecCCcCC
Confidence 456677778889999999999999998654 33 3344331 358899999999998765
No 472
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=77.57 E-value=11 Score=39.56 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 16 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 16 d~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
-+.+.++.++.|++++++++|+++..++++ .+.|.+.+ | ..++.++.||.|.|.....
T Consensus 210 ~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~-~~~v~~~~------g--------~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 210 SETITEEYEKEGINVHKLSKPVKVEKTVEG-KLVIHFED------G--------KSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEeCCc-eEEEEECC------C--------cEEEEcCEEEEeeCCCcCc
Confidence 345555667789999999999999865433 23455442 1 1479999999999987554
No 473
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=77.15 E-value=11 Score=39.21 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.+.+.+..++.|++++.+++|+++..++ +.+ .+.+. +.++.++.||.|.|.....
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~~----------------g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVTE----------------DETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEEC----------------CeEEEcCEEEEeeCCCCCc
Confidence 455666667788999999999999997654 332 23322 3579999999999998764
No 474
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=76.99 E-value=1.1 Score=44.36 Aligned_cols=27 Identities=26% Similarity=0.440 Sum_probs=25.0
Q ss_pred eEEEecCCCccCCcccccCCCCCeeEE
Q 013495 403 KLQINAQNCLHCKACDIKDPKQNIKWT 429 (442)
Q Consensus 403 ~~~i~~~~Ci~Cg~C~~~cp~~~I~w~ 429 (442)
++++..+.|..||.|...||.+||+-.
T Consensus 187 ~p~v~e~kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 187 KPVVVEEKCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred CceeeeecccccchhhhhCCCcceecc
Confidence 788999999999999999999999754
No 475
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=76.72 E-value=6.8 Score=40.79 Aligned_cols=54 Identities=33% Similarity=0.459 Sum_probs=40.0
Q ss_pred HHHHHHHHHHH----HCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 14 QLVRWLGGKAE----ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 14 ~fd~~L~~~Ae----~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.|+.-|.+.|+ ++||+|++++.|+++..+ +|.+.+ | +.+|.++.||-|.|.+++
T Consensus 206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~------g--------~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD------G--------EEEIPADTVVWAAGVRAS 263 (405)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc------C--------CeeEecCEEEEcCCCcCC
Confidence 35566666554 689999999999999543 365553 2 126999999999999855
No 476
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=76.69 E-value=0.75 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=18.5
Q ss_pred cCCCccCCcccccCCCCCee
Q 013495 408 AQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.+.|.+|+.|..+||++||.
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCCccHHHHHHhcCccccc
Confidence 56899999999999999985
No 477
>PTZ00058 glutathione reductase; Provisional
Probab=76.60 E-value=12 Score=40.85 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+.+.+.+..++.|+++++++.|.++..++++.+. +...+ + +.++.++.||.|.|.+..+
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~------~--------~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSD------G--------RKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECC------C--------CEEEECCEEEECcCCCCCc
Confidence 4445556667789999999999999765433332 33221 1 3579999999999987554
No 478
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=75.81 E-value=7.9 Score=43.62 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccc---cCCCCCccCC--CCceEEEEcEEEeccCCC
Q 013495 21 GKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGSKKENF--QRGVELRGRITLLAEGCR 85 (442)
Q Consensus 21 ~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~---~~~G~~~~~~--~~g~~i~Ak~vI~AdG~~ 85 (442)
+.+++.|+++++++.+.++..+++|+|.+|++..+-. +.+|+...-. ....++.|+.||.|.|..
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 5688899999999999999877668888887643211 1233221101 112469999999999975
No 479
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=75.67 E-value=1.3 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=18.4
Q ss_pred EEecCCCccCCcccccCCCCCe
Q 013495 405 QINAQNCLHCKACDIKDPKQNI 426 (442)
Q Consensus 405 ~i~~~~Ci~Cg~C~~~cp~~~I 426 (442)
..+.+.||.||.|..+||...+
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~~ 174 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGSA 174 (250)
T ss_pred hhCccccCCCcccccccCCccc
Confidence 3457899999999999998653
No 480
>PRK13748 putative mercuric reductase; Provisional
Probab=75.27 E-value=10 Score=40.87 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 15 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 15 fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
+-+.|.+..++.|++|+++++|.++..++ +. +.+.+.+ .++.++.||.|.|.....
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~-~~v~~~~----------------~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVD-GE-FVLTTGH----------------GELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC-CE-EEEEecC----------------CeEEeCEEEEccCCCcCC
Confidence 34556666778999999999999997654 33 3344432 369999999999998765
No 481
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=75.27 E-value=3.4 Score=37.53 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=37.6
Q ss_pred HHHHHHHCCcEEecCCeEeEEEEcCCCcE----EEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 19 LGGKAEELGVEIYPGFAASEILYDADNKV----IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 19 L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v----~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.++....+++++.+..|.++.... +.+ +.+.... .+ .+.++.+++||+|+|.++.
T Consensus 64 ~~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-----~~-------~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 64 LVDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVVE-----TG-------DGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEEE-----TT-------TEEEEEEEEEEEESTEEEE
T ss_pred cccccccceEEEeeccccccccccc-cccccCcccceeec-----cC-------CceEecCCeeeecCccccc
Confidence 3455577999998889999998765 432 1221110 11 2578999999999996633
No 482
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=74.95 E-value=14 Score=38.92 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
++-+.|.+..++.|++++++++|.++..++ . .+.+... |+ ..++.++.||.|.|.+..+
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~-~v~~~~~-------g~-------~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYK-K-QALFEYE-------GS-------IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcC-C-EEEEEEC-------Cc-------eEEEEeCEEEEecCCccCC
Confidence 355566777788999999999999987553 2 2223221 21 2479999999999988765
No 483
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=74.77 E-value=1.2 Score=41.38 Aligned_cols=19 Identities=21% Similarity=0.641 Sum_probs=16.5
Q ss_pred cCCCccCCcccccCCCCCe
Q 013495 408 AQNCLHCKACDIKDPKQNI 426 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~~~I 426 (442)
-++|++||+|-..||....
T Consensus 38 l~~C~QCG~CT~sCPs~r~ 56 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRF 56 (195)
T ss_pred HhHhhccCcccCCCCCccc
Confidence 5779999999999997664
No 484
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=74.47 E-value=1.5 Score=44.58 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.0
Q ss_pred CEEEehHHHHHHHHHHHHH
Q 013495 7 GNRKSLSQLVRWLGGKAEE 25 (442)
Q Consensus 7 ~y~v~R~~fd~~L~~~Ae~ 25 (442)
+|.|++.+|++||-+-+++
T Consensus 2 ~~~l~~~~l~~ll~~L~~~ 20 (344)
T PRK15055 2 GYKLTKEEFNLLLKRLKKE 20 (344)
T ss_pred CcccCHHHHHHHHHHHHhC
Confidence 4568999999998877654
No 485
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=73.42 E-value=6.6 Score=39.70 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcccH
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 90 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~lar 90 (442)
++-..|.++-+++|.-+++|-+|.+..... ++|..|-|.+. ....++|+..|.|+|. .+++
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~-------------~diP~~a~~~VLAsGs--ffsk 319 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNH-------------ADIPLRADFYVLASGS--FFSK 319 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEeccc-------------ccCCCChhHeeeeccc--cccc
Confidence 456678888999999999999999999887 88999988741 1468999999999995 4555
No 486
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=73.12 E-value=10 Score=44.20 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=47.6
Q ss_pred HHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccc---cCCCCCccCCC-CceEEEEcEEEeccCCCCcc
Q 013495 20 GGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGSKKENFQ-RGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 20 ~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~---~~~G~~~~~~~-~g~~i~Ak~vI~AdG~~s~l 88 (442)
.+.|++.|+++++++.+.++..+++|+|.+|++..+-+ +.+|+..+... ...++.++.||.|-|.....
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh
Confidence 35688899999999999999876678898887653311 22343211111 12479999999999987553
No 487
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=71.48 E-value=2.4 Score=41.36 Aligned_cols=41 Identities=22% Similarity=0.643 Sum_probs=28.7
Q ss_pred cccccccccce--EEEecCCCCceeEEEecCCCccCCcccccCCCCCeeE
Q 013495 381 GPESRYCPARV--YEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 428 (442)
Q Consensus 381 ~~c~~~CPa~~--y~~~~~~~~~~~~~i~~~~Ci~Cg~C~~~cp~~~I~w 428 (442)
..-..+.|+.+ |++.. .+.++ ++|.+|+.|...||.++|..
T Consensus 146 ~~hakw~p~~~~~yr~~P------~i~i~-~~C~~C~~C~~~CP~~vi~~ 188 (259)
T cd07030 146 KEHAKWQPTTACGYKYYP------VIEID-EDCDGCGKCVEECPRGVLEL 188 (259)
T ss_pred CCCCCCCCccEEEEEeec------ceech-hhCCChHHHHHhCCccceEc
Confidence 33455556543 44332 45555 89999999999999999865
No 488
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=71.31 E-value=15 Score=38.90 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.5
Q ss_pred cccCCEEEEccCCCcccCcccccHHHHHHHHHHHHHHHH
Q 013495 213 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 251 (442)
Q Consensus 213 ~~~~g~llvGDAAg~vdp~~g~GI~~Am~SG~lAAeai~ 251 (442)
..-||+.++||+++.. .-.+.|+..|..||..+.
T Consensus 302 Ts~~~IyA~GD~~~~~-----~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 302 TSVPGIYAAGDCTGVL-----PLASVAAMQGRIAMYHAL 335 (466)
T ss_pred cCCCCEEEEeeccCCc-----cchhHHHHHHHHHHHHHc
Confidence 3568999999999753 236899999999988775
No 489
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=70.96 E-value=1.5 Score=44.15 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.3
Q ss_pred cCCCccCCcccccCCCCCee
Q 013495 408 AQNCLHCKACDIKDPKQNIK 427 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~~~I~ 427 (442)
.+.|..|+.|..+||.+||.
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~ 223 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAIS 223 (314)
T ss_pred cccCcchhHHHhhCCccccC
Confidence 47899999999999999986
No 490
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=70.47 E-value=19 Score=38.15 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 14 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 14 ~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
++.+.+.++.++.|++|+++++|.++..++ +. +.|...+ .+|+ ..++.++.||.|.|.....
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~-v~v~~~~----~~g~-------~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KG-VSVAYTD----ADGE-------AQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CE-EEEEEEe----CCCc-------eeEEEcCEEEEccCCccCC
Confidence 455666777788999999999999997665 32 3454432 1231 2579999999999988664
No 491
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=70.33 E-value=1 Score=43.18 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=32.9
Q ss_pred CCCCCcccCCCCCccccccccccc--------------eEEEecCC--CC--ce--eEEEe--cCCCccCCcccccCCCC
Q 013495 367 DPKIPELVNLPEYAGPESRYCPAR--------------VYEYVPDE--KN--QL--KLQIN--AQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 367 d~~~c~~~~~~~~~~~c~~~CPa~--------------~y~~~~~~--~~--~~--~~~i~--~~~Ci~Cg~C~~~cp~~ 424 (442)
.-..|+.| +.|..+||+- +|.+..+. ++ .+ .+.-. -.+|..|+.|..+||.+
T Consensus 140 ~~~~CI~C------g~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~ 213 (234)
T COG0479 140 ELSECILC------GCCTAACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKG 213 (234)
T ss_pred hhhhcccc------chhhhhCCccccccCCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCC
Confidence 35789998 8999999963 33332221 11 01 11111 25799999999999965
No 492
>PLN02785 Protein HOTHEAD
Probab=70.11 E-value=7.1 Score=42.76 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCC---CcEEEEEeCCccccCCCCCccCCCCceEE-----EEcEEEeccC
Q 013495 12 LSQLVRWLGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVEL-----RGRITLLAEG 83 (442)
Q Consensus 12 R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~---g~v~gV~t~~~g~~~~G~~~~~~~~g~~i-----~Ak~vI~AdG 83 (442)
|..-..+ ...+...+++|++++.|+.|+++++ ++++||+..+ ++|.. .++ .++-||+|.|
T Consensus 220 R~saa~l-~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~-------~~~~~~~~~~~eVILsAG 287 (587)
T PLN02785 220 RHTAAEL-LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQ-------HQAFLSNNKGSEIILSAG 287 (587)
T ss_pred EcCHHHH-HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCce-------EEEEeecccCceEEeccc
Confidence 4434443 4455667899999999999999863 3799999864 33421 222 2478999999
Q ss_pred CCCcccHHHHHhcCCc
Q 013495 84 CRGSLSEKLIKNFKLR 99 (442)
Q Consensus 84 ~~s~lar~l~~~~gl~ 99 (442)
+-. +-+|+..-|+-
T Consensus 288 ai~--sP~lL~~SGIG 301 (587)
T PLN02785 288 AIG--SPQMLLLSGIG 301 (587)
T ss_pred ccC--CHHHHHHcCCC
Confidence 865 35555555664
No 493
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=70.05 E-value=12 Score=43.42 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccc---cCCCC------------CccCCCCceEEEEcEEEec
Q 013495 17 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGS------------KKENFQRGVELRGRITLLA 81 (442)
Q Consensus 17 ~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~---~~~G~------------~~~~~~~g~~i~Ak~vI~A 81 (442)
.+=.+.|++.||++.+.+.-.+++.+++|.|.+|+...|-. +..|. +.+...+..+|.||.||.|
T Consensus 644 ~eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A 723 (1028)
T PRK06567 644 HEELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMA 723 (1028)
T ss_pred HHHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEe
Confidence 34466799999999999999999888778999998765421 01111 2222334578999999999
Q ss_pred cCC
Q 013495 82 EGC 84 (442)
Q Consensus 82 dG~ 84 (442)
-|.
T Consensus 724 ~G~ 726 (1028)
T PRK06567 724 IGI 726 (1028)
T ss_pred ccc
Confidence 994
No 494
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=69.86 E-value=12 Score=38.25 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.5
Q ss_pred HHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 21 GKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 21 ~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
+.+++.|++++.+++|+++..++ +. |.+. +.++.+|.+|+|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~----------------~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ----------------GNQWQYDKLVLATGASAF 112 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--CE--EEEC----------------CeEEeCCEEEECCCCCCC
Confidence 44677899999999999987654 32 3333 357999999999998753
No 495
>PTZ00052 thioredoxin reductase; Provisional
Probab=69.74 E-value=19 Score=38.42 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCcc
Q 013495 16 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 88 (442)
Q Consensus 16 d~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~l 88 (442)
-+.|.+..++.|+++++++.+.++...+ +. +.|.+.+ +.++.++.||.|.|.....
T Consensus 225 ~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~---------------g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 225 SEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSD---------------GTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECC---------------CCEEEcCEEEEeeCCCCCc
Confidence 3566677778999999999999887654 32 3455442 3468999999999987553
No 496
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.61 E-value=13 Score=38.63 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCEEEehHHHHHHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEE--EEeCCccccCCCCCccCCCCceEEEEcEEEeccC
Q 013495 6 NGNRKSLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG--IGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 83 (442)
Q Consensus 6 ~~y~v~R~~fd~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~g--V~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG 83 (442)
+.+.+.|.+|++++.=.|+.. -.++.|+.|++|..-+...+.. |++.+ +..++||-+|++.|
T Consensus 91 e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---------------~~~y~ar~lVlg~G 154 (436)
T COG3486 91 ETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---------------GTVYRARNLVLGVG 154 (436)
T ss_pred hcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC---------------CcEEEeeeEEEccC
Confidence 567899999999988888888 8899999999763322222333 55543 45899999999999
Q ss_pred CCCcccH
Q 013495 84 CRGSLSE 90 (442)
Q Consensus 84 ~~s~lar 90 (442)
..-.|-.
T Consensus 155 ~~P~IP~ 161 (436)
T COG3486 155 TQPYIPP 161 (436)
T ss_pred CCcCCCh
Confidence 8766543
No 497
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=69.44 E-value=1.9 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.820 Sum_probs=14.8
Q ss_pred cCCCccCCcccccCCC
Q 013495 408 AQNCLHCKACDIKDPK 423 (442)
Q Consensus 408 ~~~Ci~Cg~C~~~cp~ 423 (442)
.++|+.||+|..+||+
T Consensus 219 ~~rCi~C~~C~~~CPt 234 (334)
T TIGR02910 219 DSRCIACGRCNTVCPT 234 (334)
T ss_pred HhhCCcCccccccCCc
Confidence 5799999999999996
No 498
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=69.41 E-value=14 Score=38.93 Aligned_cols=69 Identities=25% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCcc---ccCCCCCc-cCCCCceEEEEcEEEeccCCCC
Q 013495 17 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK-ENFQRGVELRGRITLLAEGCRG 86 (442)
Q Consensus 17 ~~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g---~~~~G~~~-~~~~~g~~i~Ak~vI~AdG~~s 86 (442)
.++.+.+++.|+++++++.+.++..++ +.+.+|++.++- .+.+|+.. ..-..+.++.++.||.|.|...
T Consensus 315 ~~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 315 EEEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred HHHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCC
Confidence 345677889999999999999987654 444556543210 11223211 0001245799999999999753
No 499
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=69.34 E-value=1.8 Score=45.52 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=16.0
Q ss_pred ecCCCccCCcccccCCCC
Q 013495 407 NAQNCLHCKACDIKDPKQ 424 (442)
Q Consensus 407 ~~~~Ci~Cg~C~~~cp~~ 424 (442)
+..+|+.||.|...||.-
T Consensus 291 e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 291 EVLACIRCGACQNECPVY 308 (432)
T ss_pred hHhhCCCCCCccccCcch
Confidence 578999999999999953
No 500
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=69.22 E-value=6.7 Score=39.65 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHHHHHHHCCcEEecCCeEeEEEEcCCCcEEEEEeCCccccCCCCCccCCCCceEEEEcEEEeccCCCCc
Q 013495 18 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 87 (442)
Q Consensus 18 ~L~~~Ae~~Gvei~~g~~v~~i~~~~~g~v~gV~t~~~g~~~~G~~~~~~~~g~~i~Ak~vI~AdG~~s~ 87 (442)
.+.+.+++.|++++.+ +|+++..++ + .|.+.+ +.+++.|++|+|+|+...
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~--~--~V~~~~---------------g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDR--R--KVLLAN---------------RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEeccc--C--EEEECC---------------CCcccccEEEEccCCCCC
Confidence 4456677889999986 788887654 2 355543 357999999999998754
Done!